Citrus Sinensis ID: 020735

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKFASSFTNASSSSRARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Secondary Structure (PSIPRED)
cccEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccccccccccccccccccccccEccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHccHcccccEEEEcHHHHHHHHHHHHHHccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mavmlrcssiltrpssvrspppdhfsdkthvsGKLASLLHKLEKFASSftnassssraRHLRFGrclesegsrgigKMQQLCDILLeglpahqqgkvqlrSTTTTFLVVNTLMLTTPFKALAETceadnsffnmPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpkKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISeregeysgsteaYGAIADCYTELGDLERAARFYDKYISRLESD
Flexible Loop (DISEMBL)
MAVMLRCSsiltrpssvrspppdhfsdkTHVSGKLASLLHKLEKFASSftnassssrarhLRFGRClesegsrgiGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpKKEELLSRLKtgknflrnQDLEKAFTEFKAALELAqnvkdpieekkaarglgaslqrqgKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Low Complexity Region (SEG)
MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKfassftnassssrarHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered region (IsUnstruct)
**************************************************************FGRCL*****RGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALR****I**************************************NFLRNQDLEKAFTEFKAALELA*************************YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI******
Disordered Region (DISOPRED)
*AVM***S**************************LASLLHKLEKFASSFT**************************KMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPED**IVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL***
Disordered Region (DISEMBL)
MAVMLRCSSILT******************VSGKLASLLHKLEKFAS***********RHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered Region (DISPRO)
MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKFASSFTNASSSSRARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKFASSFTNASSSSRARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRxxxxxxxxxxxxxxxxxxxxxxxxESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRxxxxxxxxxxxxxxxxxxxxxKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q940U6	316	Protein FLUORESCENT IN BL	yes	no	0.959	0.977	0.589	1e-99
Q80XJ3	1691	Tetratricopeptide repeat	yes	no	0.276	0.052	0.340	1e-08
Q96AY4	2481	Tetratricopeptide repeat	yes	no	0.276	0.035	0.340	1e-08

>sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1

 Score =  362 bits (930), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/329 (58%), Positives = 238/329 (72%), Gaps = 20/329 (6%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKFASSFTNASSSSRARH 60
           MA ++RC S  +  S  + PP D             S   ++ KFA+S   +       H
Sbjct: 1   MAALIRCCSSFSHTSGGQPPPRDK------------SRAPEIGKFATSIGYSVVRKPGDH 48

Query: 61  LRFGRCLESEGS----RGIGKMQQLCDIL--LEGLPAHQQGKVQLRSTTTTFLVVNTLML 114
             F + + S       +G G +Q     +  L+   A + G  +L+      L+ N+L +
Sbjct: 49  PPFSKIIHSSSQPKERQGKGILQTPFASVGSLDKFSAFE-GIGRLKLPVMAVLLTNSLQM 107

Query: 115 TTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAAL 173
            TP +ALA E CE ++S F+MP+LL VALIGATVGGLLARQR+GELQR+NEQLRQINAAL
Sbjct: 108 ATPLEALAAEICEPESSMFSMPILLLVALIGATVGGLLARQRKGELQRLNEQLRQINAAL 167

Query: 174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK 233
           RRQAKIESYAPSLSYAPVG+RIP+ E+IV+PKK+EL+S+LKTGK FLRNQ+ EKA+TEFK
Sbjct: 168 RRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISKLKTGKTFLRNQEPEKAYTEFK 227

Query: 234 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 293
            ALELAQ++KDP EEKKAARGLGASLQRQGKYREAI+YHSMVL IS+RE E SG TEAYG
Sbjct: 228 IALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDSGITEAYG 287

Query: 294 AIADCYTELGDLERAARFYDKYISRLESD 322
           AIADCYTELGDLE+A +FYD YI+RLE+D
Sbjct: 288 AIADCYTELGDLEKAGKFYDTYIARLETD 316

Negative regulator of tetrapyrrole biosynthesis (including chlorophyll) in chloroplasts, probably via HEMA1 repression. Inhibits especially the magnesium ion Mg(2+) branch of tetrapyrrole biosynthesis, but independently of heme.
Arabidopsis thaliana (taxid: 3702)

>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 207 NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD 266

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 267 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

Mus musculus (taxid: 10090)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 224  DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
            + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 972  NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETN 1031

Query: 284  EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
              +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 1032 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
255576615	332	FLU, putative [Ricinus communis] gi|2235	0.990	0.960	0.679	1e-113
297742973	332	unnamed protein product [Vitis vinifera]	0.990	0.960	0.656	1e-111
224119612	229	predicted protein [Populus trichocarpa]	0.711	1.0	0.834	1e-108
449453383	297	PREDICTED: protein FLUORESCENT IN BLUE L	0.919	0.996	0.634	1e-106
388506112	300	unknown [Lotus japonicus]	0.906	0.973	0.636	1e-106
147797982	232	hypothetical protein VITISV_027349 [Viti	0.708	0.982	0.815	1e-103
357514129	300	Tetratricopeptide repeat protein [Medica	0.900	0.966	0.601	1e-100
356519891	297	PREDICTED: protein FLUORESCENT IN BLUE L	0.906	0.983	0.626	1e-100
388522423	300	unknown [Medicago truncatula]	0.900	0.966	0.601	1e-100
358248692	297	uncharacterized protein LOC100818487 [Gl	0.906	0.983	0.623	1e-100

>gi|255576615|ref|XP_002529198.1| FLU, putative [Ricinus communis] gi|223531376|gb|EEF33212.1| FLU, putative [Ricinus communis]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/324 (67%), Positives = 257/324 (79%), Gaps = 5/324 (1%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHF--SDKTHVSGKLASLLHKLEKFASSFTNASSSSRA 58
           MAV+LRCS    RP S+  PPP     S   H  GKL SLL K+EKF SS +  ++    
Sbjct: 12  MAVVLRCSCFHPRPHSLSPPPPSDLMISGNAHFPGKLDSLLFKVEKFVSSSSFGNAFGLP 71

Query: 59  RHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTTPF 118
              R+     +EG + + ++  + +   E    HQ G ++LRS+ T FLV N LM T PF
Sbjct: 72  PFYRYKPV--TEGCKDMIQVPFVYEQFFEQFSPHQ-GNLRLRSSVTAFLVTNALMWTAPF 128

Query: 119 KALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAK 178
           +ALAET EADNSFFNMP+LLFVAL+GATVGGLLARQRRGELQ++NEQLRQINAALRRQAK
Sbjct: 129 EALAETREADNSFFNMPVLLFVALVGATVGGLLARQRRGELQKLNEQLRQINAALRRQAK 188

Query: 179 IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 238
           IESYAP+LSYAPVGSRI E+EVIVDP+K+EL+SRLK+GK FLRNQD EKAF EFKAALEL
Sbjct: 189 IESYAPTLSYAPVGSRIAENEVIVDPRKQELISRLKSGKKFLRNQDPEKAFEEFKAALEL 248

Query: 239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 298
           A+++KDP+EEKKAARGLGASLQRQGKYREAI YHSMVL IS++EGE SG+TEAYGAIADC
Sbjct: 249 ARSLKDPMEEKKAARGLGASLQRQGKYREAINYHSMVLAISQKEGEESGNTEAYGAIADC 308

Query: 299 YTELGDLERAARFYDKYISRLESD 322
           YTELGDLERA +FYD YI+RLE D
Sbjct: 309 YTELGDLERAGKFYDNYIARLEKD 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742973|emb|CBI35840.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/335 (65%), Positives = 252/335 (75%), Gaps = 16/335 (4%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKFASSFTNASSS----- 55
           MA ++RC  +LT P+S         S K++VSG+LA    ++ KF S F + SS      
Sbjct: 1   MAFVVRCCCVLTGPNSGHVGLGSRPSGKSYVSGRLA-FPFEMGKFVSCFGDNSSGPTGIF 59

Query: 56  -----SRARHLRFGRCLESEGSRGIGKMQQL---CDILLEGLPAHQQGKVQLRSTTTTFL 107
                 R  HL F R +E       G + Q+      + E L AHQ G V  R   T   
Sbjct: 60  HILQPGRPGHLGF-RDIEIAKPGRTGDIDQVPTDNGTITEHLSAHQ-GMVLFRFPATALA 117

Query: 108 VVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLR 167
           V N L+LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLARQRRGELQRVNEQLR
Sbjct: 118 VTNALLLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLARQRRGELQRVNEQLR 177

Query: 168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEK 227
           QINAALRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S LK GKNFLRNQ+ EK
Sbjct: 178 QINAALRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCLKAGKNFLRNQNPEK 237

Query: 228 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 287
           AF EFK ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS VL+IS+REGE SG
Sbjct: 238 AFMEFKTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHSTVLEISKREGENSG 297

Query: 288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
           +TEAYGAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 298 NTEAYGAIADCYTELGDLERAGKFYDQYIARLEKD 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119612|ref|XP_002331203.1| predicted protein [Populus trichocarpa] gi|222873324|gb|EEF10455.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/229 (83%), Positives = 211/229 (92%)

Query: 94  QGKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLAR 153
           QG +QLRS+   FLV N LM TTPF+ALAETCEAD+S FNMPLLLFVAL+GATVGGLLAR
Sbjct: 1   QGNMQLRSSAMAFLVTNALMWTTPFEALAETCEADSSIFNMPLLLFVALVGATVGGLLAR 60

Query: 154 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRL 213
           QR+GELQR+NEQLRQINAALRRQAKIESYAP+LSYAPVGSRI E EVIVDP+KE+L+SRL
Sbjct: 61  QRKGELQRLNEQLRQINAALRRQAKIESYAPTLSYAPVGSRILESEVIVDPRKEDLISRL 120

Query: 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 273
           K GKNFLRNQD EKAF EFK+ALELAQN+KDP EEKKA RGLGASLQRQGK +EAIKYHS
Sbjct: 121 KVGKNFLRNQDPEKAFVEFKSALELAQNLKDPTEEKKAVRGLGASLQRQGKLQEAIKYHS 180

Query: 274 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
           MVL IS+REGE SG+TEAYGAIADCYTELGDLE+AA+FYDKYI+RLE+D
Sbjct: 181 MVLAISKREGEESGNTEAYGAIADCYTELGDLEQAAKFYDKYIARLETD 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453383|ref|XP_004144437.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus] gi|449517661|ref|XP_004165863.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/323 (63%), Positives = 244/323 (75%), Gaps = 27/323 (8%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKTHVSGKLASLLHKLEKFASSFTNASSSSRARH 60
           MA+ +RCS  L+R +S  SP   H S   H+SGK+  +   ++ F               
Sbjct: 1   MAMAMRCSCFLSRLNSPPSPSSHHLSRSLHLSGKVPHVAINVDNF--------------- 45

Query: 61  LRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQ-QGKVQLRSTTTTFLVVNTLMLTTPFK 119
           ++F  C ES     I +  Q+ +     LP  + QG ++ R     FL+ N    + P K
Sbjct: 46  VKF--CGES-----ILRPLQIQN----ALPVIKCQGNIETRFPVMAFLLANVFTFSVPLK 94

Query: 120 ALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKI 179
           A+AETCEA++S FNMP+LL VAL+GATVGGLLARQRRGEL+R+NEQLRQINAALRRQAKI
Sbjct: 95  AMAETCEAESSAFNMPILLAVALVGATVGGLLARQRRGELKRLNEQLRQINAALRRQAKI 154

Query: 180 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 239
           ESYAP+LSYAPVG RI E+EVIVDP+KE+L+SRLK+GKNFLRNQD EKAF EFK ALELA
Sbjct: 155 ESYAPTLSYAPVGGRILENEVIVDPRKEDLISRLKSGKNFLRNQDPEKAFVEFKTALELA 214

Query: 240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 299
           Q ++DPIEEKKAARGLGASLQRQGKYREAIKYHSMVL ISEREGE SG+TEA+GAIADCY
Sbjct: 215 QGLQDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEQSGNTEAFGAIADCY 274

Query: 300 TELGDLERAARFYDKYISRLESD 322
           TELGDLE+AA FYDKYI+RLE+D
Sbjct: 275 TELGDLEKAAYFYDKYIARLETD 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506112|gb|AFK41122.1| unknown [Lotus japonicus]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 241/327 (73%), Gaps = 35/327 (10%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKT--HVSGKLASLLHKLEKFASSFTNAS--SSS 56
           MAV++RCS  L+RP     P P   ++ T  H+ GKLA L  K + F   F + S  SS 
Sbjct: 4   MAVLVRCSCFLSRP---HFPQPQFSANNTMLHLPGKLACLSFKADNFVPIFKDTSDGSSK 60

Query: 57  RARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTT 116
               L   +C E              DI       HQ      +  + TFL  N LM T 
Sbjct: 61  IPSMLHCSKCKE--------------DI-------HQ------KFPSLTFLASNILMFTM 93

Query: 117 PFKALAETCEA-DNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRR 175
           P KALAETCEA  NSFFNMP+LL VALIGATVGGL+ARQR+GELQRVNEQL QIN ALR+
Sbjct: 94  PSKALAETCEAAGNSFFNMPILLAVALIGATVGGLVARQRKGELQRVNEQLLQINTALRK 153

Query: 176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 235
           QAKIESYAPSLSYAP+G+RIP++E+IVDPKK+EL+S+LK+GKNFLRNQ L+KAFTEFK A
Sbjct: 154 QAKIESYAPSLSYAPIGARIPDNEIIVDPKKQELISKLKSGKNFLRNQQLDKAFTEFKIA 213

Query: 236 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 295
           LELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMVL IS REGE SG++EA+GAI
Sbjct: 214 LELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLAISGREGEDSGNSEAFGAI 273

Query: 296 ADCYTELGDLERAARFYDKYISRLESD 322
           ADCYTELGDLE+A  +YDKYI+ LE D
Sbjct: 274 ADCYTELGDLEKAGEYYDKYIAMLEKD 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797982|emb|CAN65010.1| hypothetical protein VITISV_027349 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/228 (81%), Positives = 204/228 (89%)

Query: 95  GKVQLRSTTTTFLVVNTLMLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQ 154
           G V  R   T   V N L+LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLARQ
Sbjct: 5   GMVLFRFPATALAVTNALLLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLARQ 64

Query: 155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLK 214
           RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S LK
Sbjct: 65  RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCLK 124

Query: 215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 274
            GKNFLRNQ+ EKAF EFK ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS 
Sbjct: 125 AGKNFLRNQNPEKAFMEFKTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHST 184

Query: 275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
           VL+IS+REGE SG+TEAYGAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 185 VLEISKREGENSGNTEAYGAIADCYTELGDLERAGKFYDQYIARLEKD 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514129|ref|XP_003627353.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355521375|gb|AET01829.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 235/329 (71%), Gaps = 39/329 (11%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKT--HVSGKLASLLHKLEKFA----SSFTNASS 54
           MAV++RCS   +R   + S  P   S+ T  H+SGK      K++K       +F  +S 
Sbjct: 4   MAVVVRCSCFHSR---LHSSLPQFCSNNTNLHLSGKFTCFSLKVDKVVPLLKDTFDRSSK 60

Query: 55  SSRARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLML 114
                H                     C    + +P         R  ++ FL  N LM 
Sbjct: 61  IPTVLH---------------------CSNCKDDMPK--------RFHSSLFLASNFLMF 91

Query: 115 TTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALR 174
           + P KALAETCEADNS FNMP+LL VALIGATVGGL+ARQR+GELQR+NEQL QINAALR
Sbjct: 92  SMPCKALAETCEADNSMFNMPILLAVALIGATVGGLVARQRKGELQRLNEQLLQINAALR 151

Query: 175 RQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK 233
           +QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKNFLRNQ  ++AFTEFK
Sbjct: 152 KQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKNFLRNQQPDRAFTEFK 211

Query: 234 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 293
            ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL ISEREGE SGSTEA+G
Sbjct: 212 TALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSISEREGEDSGSTEAFG 271

Query: 294 AIADCYTELGDLERAARFYDKYISRLESD 322
           AIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 272 AIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519891|ref|XP_003528602.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Glycine max]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/327 (62%), Positives = 236/327 (72%), Gaps = 35/327 (10%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKTH--VSGKLASLLHKLEKFASSFTNA--SSSS 56
           MAV++RCS  LTRP   R   P  +++ T   + GKLA L  K +K    F +    SS 
Sbjct: 1   MAVLIRCSCFLTRP---RFSQPQFYANNTKPVLPGKLACLSLKRDKGVPHFVDTFDGSSK 57

Query: 57  RARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTT 116
               L   +C E              DI       HQ      R  +  F+  N LM + 
Sbjct: 58  IPSLLHCSKCKE--------------DI-------HQ------RFPSLIFVASNILMFSM 90

Query: 117 PFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQ 176
           P  ALAETCEAD S FNMP+LL VALIGATVGGLLARQRR ELQRVNEQL QIN+ALR+Q
Sbjct: 91  PNTALAETCEADTSVFNMPILLAVALIGATVGGLLARQRRNELQRVNEQLIQINSALRKQ 150

Query: 177 AKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 235
           AKIESYAPSLSYAP+G  RI ++E+IV+PKK+EL+S+LK GKNFLRNQ  +KAFTEFK A
Sbjct: 151 AKIESYAPSLSYAPIGGGRILDNEIIVNPKKQELISKLKNGKNFLRNQRPDKAFTEFKNA 210

Query: 236 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 295
           LELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMVL ISEREGE SGSTEA+GAI
Sbjct: 211 LELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLAISEREGEDSGSTEAFGAI 270

Query: 296 ADCYTELGDLERAARFYDKYISRLESD 322
           ADCYTELG+LE+A +FYDKYI+RLE D
Sbjct: 271 ADCYTELGELEKAGQFYDKYIARLEKD 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522423|gb|AFK49273.1| unknown [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/329 (60%), Positives = 234/329 (71%), Gaps = 39/329 (11%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKT--HVSGKLASLLHKLEKFA----SSFTNASS 54
           MAV++RCS   +R   + S  P   S+ T  H+SGK      K++K       +F  +S 
Sbjct: 4   MAVVVRCSCFHSR---LHSSLPQFCSNNTNLHLSGKFTCFSLKVDKVVPLLKDTFDRSSK 60

Query: 55  SSRARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLML 114
                H                     C    + +P         R  ++ FL  N LM 
Sbjct: 61  IPTVLH---------------------CSNCKDDMPK--------RFHSSLFLASNFLMF 91

Query: 115 TTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALR 174
           + P KALAETCEADNS FNMP+LL VALIGATVGGL ARQR+GELQR+NEQL QINAALR
Sbjct: 92  SMPCKALAETCEADNSMFNMPILLAVALIGATVGGLAARQRKGELQRLNEQLLQINAALR 151

Query: 175 RQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK 233
           +QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKNFLRNQ  ++AFTEFK
Sbjct: 152 KQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKNFLRNQQPDRAFTEFK 211

Query: 234 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 293
            ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL ISEREGE SGSTEA+G
Sbjct: 212 TALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSISEREGEDSGSTEAFG 271

Query: 294 AIADCYTELGDLERAARFYDKYISRLESD 322
           AIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 272 AIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248692|ref|NP_001239924.1| uncharacterized protein LOC100818487 [Glycine max] gi|255645496|gb|ACU23243.1| unknown [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/327 (62%), Positives = 234/327 (71%), Gaps = 35/327 (10%)

Query: 1   MAVMLRCSSILTRPSSVRSPPPDHFSDKTH--VSGKLASLLHKLEKFASSFTNA--SSSS 56
           M +++RCS    RP   R   P  + + T   + GKLA L  K +K    F +    SS 
Sbjct: 1   MVMLIRCSCFFARP---RFSQPQFYGNNTKPLLPGKLAFLSLKPDKGVPHFEDTLDGSSK 57

Query: 57  RARHLRFGRCLESEGSRGIGKMQQLCDILLEGLPAHQQGKVQLRSTTTTFLVVNTLMLTT 116
            +  L   +C E              DI       HQ      R  +  F+  N LM + 
Sbjct: 58  ISCLLHCSKCKE--------------DI-------HQ------RFPSLIFVASNVLMFSM 90

Query: 117 PFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQ 176
           P  ALAETCEADNS FNMP+LL VALIGATVGGLLARQRR ELQRVNEQL QINAALR+Q
Sbjct: 91  PNTALAETCEADNSVFNMPILLAVALIGATVGGLLARQRRNELQRVNEQLIQINAALRKQ 150

Query: 177 AKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 235
           AKIESYAPSLSYAP+G  RI ++E+IVDPKK+EL+S+LK GKNFLRNQ  +KAFTEFK A
Sbjct: 151 AKIESYAPSLSYAPIGGGRILDNEIIVDPKKQELISKLKNGKNFLRNQQPDKAFTEFKNA 210

Query: 236 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 295
           LELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMVL ISEREGE SGSTEA+GAI
Sbjct: 211 LELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLGISEREGEDSGSTEAFGAI 270

Query: 296 ADCYTELGDLERAARFYDKYISRLESD 322
           ADCYTELG+LE+A +FYDKYI+RLE D
Sbjct: 271 ADCYTELGELEKAGQFYDKYIARLEKD 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
MGI|MGI:2140873	1691	Ttc28 "tetratricopeptide repea	0.285	0.054	0.347	1.6e-06
UNIPROTKB|K7ZRV2	2481	TPRBK "TPR repeat-containing b	0.285	0.037	0.347	1.9e-06
UNIPROTKB|E1BS79	588	GPSM1 "Uncharacterized protein	0.322	0.176	0.292	0.00056
UNIPROTKB|E1BR28	663	GPSM2 "Uncharacterized protein	0.332	0.161	0.293	0.00085
TAIR|locus:2089353	475	AT3G16760 [Arabidopsis thalian	0.180	0.122	0.379	0.00089

MGI|MGI:2140873 Ttc28 "tetratricopeptide repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   226 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   209 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNP 268

Query:   286 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:   269 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0007346 "regulation of mitotic cell cycle" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0097431 "mitotic spindle pole" evidence=ISO

GO:1990023 "mitotic spindle midzone" evidence=ISO

UNIPROTKB|K7ZRV2 TPRBK "TPR repeat-containing big gene cloned at Keio" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   226 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   974 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNP 1033

Query:   286 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:  1034 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

GO:0007067 "mitosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0030496 "midbody" evidence=IEA

UNIPROTKB|E1BS79 GPSM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 0.00056, P = 0.00056
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query:   211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 270
             S L     FL   D+   +  +K  L+L++ +KD   E +A   LG +      Y +AI+
Sbjct:   227 SNLGNAHIFLGRFDISAEY--YKKTLQLSRQLKDQAVEAQACYSLGNTYTLLQDYEKAIE 284

Query:   271 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
             YH   L I++  G+  G   A  ++ + Y  LG  E+A  F  K++
Sbjct:   285 YHLKHLVIAQELGDRVGEGRACWSLGNAYVSLGSHEQALHFARKHL 330

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E1BR28 GPSM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
 Identities = 32/109 (29%), Positives = 54/109 (49%)

Query:   216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
             G  ++   + E A   +K  L+LA+ +KD   E +A   LG +      Y +AI YH   
Sbjct:   251 GNAYIFLGEFETASEYYKRTLQLARQLKDRAVEAQACYSLGNTYTLLQDYEKAIDYHLKH 310

Query:   276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 322
             L I++   +  G   A  ++ + YT LG+ ++A  F +++  ISR   D
Sbjct:   311 LVIAQELNDKIGEGRACWSLGNAYTALGNHDQAMHFAERHLEISREVGD 359

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

TAIR|locus:2089353 AT3G16760 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:   251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 308
             +A+  G   QRQG+Y +AIK+ S  + + +R G+ +GS E     A CY E+G+ ++A
Sbjct:   355 SAKNKGIDNQRQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKA 412


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      322       307    0.0010  115 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  180 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.47u 0.09s 26.56t   Elapsed:  00:00:01
  Total cpu time:  26.47u 0.09s 26.56t   Elapsed:  00:00:01
  Start:  Fri May 10 06:14:50 2013   End:  Fri May 10 06:14:51 2013

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940U6	FLU_ARATH	No assigned EC number	0.5896	0.9596	0.9778	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034046001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (341 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023347001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (402 aa)				•	•		•		0.553

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.004

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELG 303
             +   A   L   L+R G Y EA++     L+++   GE    T  A   +A  Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 304 DLERAARFYDKYISRLES 321
           D + A  + +K ++  E+
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  + +  D ++A   ++ ALEL  +  D      A   L A+  + GKY EA++ +   
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNAD------AYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           L++         + +AY  +   Y +LG  E A   Y+K + 
Sbjct: 61  LELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 309
           +A   LG    + G Y EA++Y+   L++         + +AY  +A  Y +LG  E A 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEAL 54

Query: 310 RFYDKYIS 317
             Y+K + 
Sbjct: 55  EDYEKALE 62

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSM 274
                R  D ++A    + ALELA+ +  D  E  +A   L       G Y EA++Y   
Sbjct: 12  ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 275 VLQISER 281
            L + E 
Sbjct: 72  ALALREA 78

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERA 308
           +A + LG +L + G Y EAI+ +   L++         + EAY  +A  Y +LG D E A
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPD------NAEAYYNLALAYLKLGKDYEEA 57

Query: 309 ARFYDKYIS 317
               +K + 
Sbjct: 58  LEDLEKALE 66

Length = 69

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 313
           GL A  Q   +Y EAI  +++   +             Y   A+C   LG+ E A +  D
Sbjct: 56  GLAACCQMLKEYEEAIDAYALAAALDP------DDPRPYFHAAECLLALGEPESALKALD 109

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.39
PRK15359	144	type III secretion system chaperone protein SscB;	99.37
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.18
KOG0553	304	consensus TPR repeat-containing protein [General f	99.16
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.15
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.14
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.13
KOG0553	304	consensus TPR repeat-containing protein [General f	99.12
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.1
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.09
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.07
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.04
KOG1126	638	consensus DNA-binding cell division cycle control	99.04
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.03
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.01
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.01
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.0
PRK12370	553	invasion protein regulator; Provisional	99.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.99
PRK15359	144	type III secretion system chaperone protein SscB;	98.99
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.99
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.99
PRK12370	553	invasion protein regulator; Provisional	98.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.96
PRK11189	296	lipoprotein NlpI; Provisional	98.96
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.95
KOG1125	579	consensus TPR repeat-containing protein [General f	98.94
PRK10803	263	tol-pal system protein YbgF; Provisional	98.94
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.93
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
KOG1126	638	consensus DNA-binding cell division cycle control	98.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.85
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.85
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.79
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.78
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.75
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.72
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.7
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.65
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.65
PRK15331	165	chaperone protein SicA; Provisional	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.63
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
PLN02789	320	farnesyltranstransferase	98.63
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.63
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.57
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.57
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.53
PF12688	120	TPR_5: Tetratrico peptide repeat	98.52
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.5
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.49
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.47
KOG2003	840	consensus TPR repeat-containing protein [General f	98.46
KOG4234	271	consensus TPR repeat-containing protein [General f	98.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.41
KOG4555	175	consensus TPR repeat-containing protein [Function	98.38
KOG1129	478	consensus TPR repeat-containing protein [General f	98.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.35
PF13512	142	TPR_18: Tetratricopeptide repeat	98.34
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
KOG2003	840	consensus TPR repeat-containing protein [General f	98.32
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.31
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.28
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.28
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.28
PLN02789	320	farnesyltranstransferase	98.24
KOG1129	478	consensus TPR repeat-containing protein [General f	98.24
PRK04841	903	transcriptional regulator MalT; Provisional	98.24
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.24
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.23
KOG1125	579	consensus TPR repeat-containing protein [General f	98.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.22
PF13371	73	TPR_9: Tetratricopeptide repeat	98.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.21
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.21
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.21
PRK04841	903	transcriptional regulator MalT; Provisional	98.2
PRK14574	822	hmsH outer membrane protein; Provisional	98.19
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.18
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.17
KOG2076	895	consensus RNA polymerase III transcription factor	98.17
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.17
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.17
PRK10803	263	tol-pal system protein YbgF; Provisional	98.16
KOG2076	895	consensus RNA polymerase III transcription factor	98.15
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.15
PF13371	73	TPR_9: Tetratricopeptide repeat	98.14
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.14
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.13
KOG1586	288	consensus Protein required for fusion of vesicles	98.12
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.12
KOG4234	271	consensus TPR repeat-containing protein [General f	98.11
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.07
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.06
PRK11906	458	transcriptional regulator; Provisional	98.05
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.02
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.01
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.0
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.99
KOG1586	288	consensus Protein required for fusion of vesicles	97.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.95
PRK14574	822	hmsH outer membrane protein; Provisional	97.93
KOG4555	175	consensus TPR repeat-containing protein [Function	97.93
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.93
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.93
KOG1585	308	consensus Protein required for fusion of vesicles	97.9
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.86
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.86
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.83
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.82
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.74
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.67
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.61
PF12688	120	TPR_5: Tetratrico peptide repeat	97.6
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.6
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.55
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.54
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.49
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.49
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.47
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.44
PF13512	142	TPR_18: Tetratricopeptide repeat	97.43
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.43
PF13431	34	TPR_17: Tetratricopeptide repeat	97.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.43
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.39
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.38
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.38
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.35
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.33
PF13428	44	TPR_14: Tetratricopeptide repeat	97.32
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.28
PRK15331	165	chaperone protein SicA; Provisional	97.27
KOG1585	308	consensus Protein required for fusion of vesicles	97.24
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.24
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.24
PRK11906	458	transcriptional regulator; Provisional	97.23
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.18
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.17
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.17
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.15
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.15
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.13
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.12
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.12
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.12
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.12
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.09
PF13431	34	TPR_17: Tetratricopeptide repeat	97.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.03
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.91
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.9
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.85
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.83
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.81
PF13428	44	TPR_14: Tetratricopeptide repeat	96.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.74
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.64
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.52
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.46
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.44
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.43
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.4
PLN03218	1060	maturation of RBCL 1; Provisional	96.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.36
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.35
PLN03218	1060	maturation of RBCL 1; Provisional	96.34
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.29
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.25
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.25
KOG2471	696	consensus TPR repeat-containing protein [General f	96.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.16
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.13
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.06
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.06
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.03
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.93
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.9
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.88
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.87
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.84
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.73
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.73
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.73
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.72
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.71
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.7
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.65
PLN03077	857	Protein ECB2; Provisional	95.64
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.64
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.6
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.39
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.35
KOG2471	696	consensus TPR repeat-containing protein [General f	95.35
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.29
KOG0687	393	consensus 26S proteasome regulatory complex, subun	95.15
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.97
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.96
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.84
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.82
PLN03077	857	Protein ECB2; Provisional	94.61
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.58
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.49
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.46
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.36
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.29
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.15
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.92
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.92
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.88
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.85
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.82
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.79
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.78
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.58
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.4
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.3
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.27
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.21
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.2
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.12
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.94
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.85
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.85
PRK10941	269	hypothetical protein; Provisional	92.69
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.56
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.36
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.22
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.1
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.96
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.84
KOG1463	411	consensus 26S proteasome regulatory complex, subun	91.32
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.29
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.21
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.9
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.74
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.38
COG4976	287	Predicted methyltransferase (contains TPR repeat)	90.35
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.3
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	90.22
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.21
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.19
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.14
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.1
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.1
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.01
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.01
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	90.0
COG5159	421	RPN6 26S proteasome regulatory complex component [	89.73
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.5
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.39
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.35
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.24
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.84
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.83
PRK10941	269	hypothetical protein; Provisional	88.66
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.63
KOG1310	758	consensus WD40 repeat protein [General function pr	88.16
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.09
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.07
KOG3783	546	consensus Uncharacterized conserved protein [Funct	87.87
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.49
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.36
KOG3364	149	consensus Membrane protein involved in organellar	87.05
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.53
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.39
KOG2047	835	consensus mRNA splicing factor [RNA processing and	86.0
COG3947	361	Response regulator containing CheY-like receiver a	85.78
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	85.58
KOG1463	411	consensus 26S proteasome regulatory complex, subun	85.16
COG5187	412	RPN7 26S proteasome regulatory complex component,	84.48
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.27
KOG3364	149	consensus Membrane protein involved in organellar	84.04
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	83.47
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	82.76
KOG4014	248	consensus Uncharacterized conserved protein (conta	82.76
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	82.2
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	81.49
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	81.15
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.0
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.82
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	80.52
COG3629	280	DnrI DNA-binding transcriptional activator of the	80.48
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	80.42
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	80.12
KOG2047	835	consensus mRNA splicing factor [RNA processing and	80.06

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.39  E-value=4.1e-12  Score=123.85  Aligned_cols=119  Identities=21%  Similarity=0.286  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      ++-.++...|.+++.+.+.                .+.+.+++|++|..+|..++|..+|+++++..+.      .+.+.
T Consensus       334 G~V~ea~~cYnkaL~l~p~----------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~  391 (966)
T KOG4626|consen  334 GSVTEAVDCYNKALRLCPN----------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAH  391 (966)
T ss_pred             cchHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhh
Confidence            3555666667777766655                4556666777777777777777777777776666      66666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .|||.+|..+|++++|+.+|+++|.+      .|..+++|.|+|.+|.++|+...|+..|.+||.+.
T Consensus       392 nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  392 NNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             hhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            77777777777777777777777766      66666677777777777777777777777666543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.39  E-value=2.5e-11  Score=106.46  Aligned_cols=120  Identities=15%  Similarity=0.207  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.++.+..+++++...|.                ....++.+|.+|...|++++|+..|++++++.++      ...++.
T Consensus        54 ~~~~~i~~l~~~L~~~P~----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~  111 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYA  111 (198)
T ss_pred             hHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            557788889999998887                6779999999999999999999999999999998      889999


Q ss_pred             HHHHHH-HHcCC--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASL-QRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~-~~~gd--~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++ ...|+  +++|.+.++++++.      +|....++.++|..+...|++++|+.+|+++++..+.
T Consensus       112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        112 ALATVLYYQAGQHMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            999975 67787  59999999999999      8889999999999999999999999999999987654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.37  E-value=6.8e-12  Score=104.41  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      .+.+|.++...|++++|+.+|++++.+.|.      ...++.++|.++...|++++|+..|++++++      .|..+.+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a   94 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEP   94 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHH
Confidence            556899999999999999999999999988      8899999999999999999999999999999      8889999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++++|.++...|++++|+..|++++++.++
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999987654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.34  E-value=2.4e-11  Score=118.55  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      +..+.+...|.+++...|.                -+.+..++|.+|..+|++++|+.+|++++.+.|.      .++++
T Consensus       368 ~~~e~A~~ly~~al~v~p~----------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------fAda~  425 (966)
T KOG4626|consen  368 GKIEEATRLYLKALEVFPE----------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------FADAL  425 (966)
T ss_pred             ccchHHHHHHHHHHhhChh----------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------HHHHH
Confidence            3778899999999999887                7788999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .|+|++|-.+|+.+.|+.+|++||.+      +|..++++.|||.+|...|+..+|+..|++++.+-+
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            99999999999999999999999999      999999999999999999999999999999998654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.31  E-value=2.9e-11  Score=105.70  Aligned_cols=127  Identities=17%  Similarity=0.230  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH
Q 020735          168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  247 (322)
Q Consensus       168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~  247 (322)
                      .+....+...+...+++++...|.                ...++..+|.+|...|+.+.|.+.|++|+.+.|+      
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------  101 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------  101 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------
Confidence            444445778899999999999988                7778999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ....++|.|..++.+|+|++|..+|++|++-.    ..+..+..+.|+|.|..+.|+++.|.++|++++++.+
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp  170 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP  170 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence            88899999999999999999999999998752    2556788999999999999999999999999998754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.27  E-value=7.3e-11  Score=96.12  Aligned_cols=102  Identities=21%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .....+.+|..++..|++++|...++++++..+.      ...+++++|.++...|++++|++++++++++      .+.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~   83 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAAL------DPD   83 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCC
Confidence            5567888999999999999999999999998887      7889999999999999999999999999998      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ....++++|.+|...|++++|..+|+++++..++
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            8899999999999999999999999999987654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.25  E-value=1.2e-10  Score=97.20  Aligned_cols=102  Identities=18%  Similarity=0.114  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      .+.....+.+|..++..|++++|...|+-...+.+.      ....+++||.++..+|+|.+|+..|.+++.+      +
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------K   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------C
Confidence            446778899999999999999999999999999998      8999999999999999999999999999999      7


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++.+.++.++|.||...|+.+.|.+.|+.++...
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999876

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=1.8e-10  Score=107.19  Aligned_cols=124  Identities=17%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+.+.+...+.            +....+..++.+|.+|...|++++|+..|++++++.|+      .+.+++
T Consensus        41 ~~e~~i~~~~~~l~~~~~------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~  102 (296)
T PRK11189         41 QQEVILARLNQILASRDL------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYN  102 (296)
T ss_pred             HHHHHHHHHHHHHccccC------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence            445566666666654322            12235667888999999999999999999999998887      788899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++...|++++|++.|++++++      +|....++.++|.++...|++++|++.+++++++.++
T Consensus       103 ~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        103 YLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998      7888889999999999999999999999999887654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=4.1e-10  Score=97.96  Aligned_cols=120  Identities=19%  Similarity=0.266  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...+.                ....+..+|.++...|++++|+..++++++...    .......+.
T Consensus        80 ~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~  139 (234)
T TIGR02521        80 ELEKAEDSFRRALTLNPN----------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLE  139 (234)
T ss_pred             CHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHH
Confidence            556777777777776554                344677889999999999999999999887422    122455688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++|.++...|++++|+.+++++++.      .+....++..+|.++...|++++|..+++++++..
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  199 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQI------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY  199 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8999999999999999999999887      55567788899999999999999999999988763

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.18  E-value=2.6e-10  Score=84.32  Aligned_cols=74  Identities=28%  Similarity=0.553  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.++.++|.+|..+|+|++|+++|++++++.+..++.. ..+.+++++|.+|..+|++++|++++++++++.++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            678899999999999999999999999999976776544 46899999999999999999999999999998864

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.16  E-value=2.5e-10  Score=103.45  Aligned_cols=104  Identities=25%  Similarity=0.360  Sum_probs=97.8

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       205 ~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      ....+..+-.-|+-.+..++|.+|+..|.+|+++.|.      .+..|.+.+.+|.++|.|+.|++.++.+|.+      
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------  144 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence            4456777788999999999999999999999999998      8889999999999999999999999999999      


Q ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          285 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|....+|..||.+|..+|++++|++.|++||++-+
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP  180 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP  180 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence            999999999999999999999999999999998754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.15  E-value=6.8e-10  Score=113.23  Aligned_cols=99  Identities=9%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      ..++.+|.+++..|++++|+..|++++++.|.      ...++.++|.++..+|++++|+..|+++++.      .|..+
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~  467 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAP  467 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCh
Confidence            35556666666666666666666666666555      4555666666666666666666666666665      55556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+++++|.++..+|++++|+++|++++++.+
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            6666677777777777777777777766543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.14  E-value=8.2e-10  Score=112.62  Aligned_cols=131  Identities=13%  Similarity=0.058  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  242 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~  242 (322)
                      ...+.......+.+.++..|++++...|.                ....++.+|.++...|++++|+..|++++++.+. 
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-  397 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIELDPR----------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-  397 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence            33333444445889999999999998876                5668889999999999999999999999998877 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                           ...+++++|.+++..|++++|+.+|++++++      .|....++.++|.++..+|++++|+..|+++++..++
T Consensus       398 -----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       398 -----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                 6788999999999999999999999999999      7778889999999999999999999999999987653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.13  E-value=1.8e-10  Score=108.08  Aligned_cols=113  Identities=20%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .-.++.++|++|.-.|+++.|+++|+..+.++.++++....++..|.||+.|....++++||+|+.+-+.|+.+.+|..+
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33456778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...+++.||..|..+|..++|..+.++.+++..
T Consensus       314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~  346 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSL  346 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888877643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=1.2e-09  Score=99.14  Aligned_cols=124  Identities=15%  Similarity=0.228  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  234 (322)
Q Consensus       155 r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~k  234 (322)
                      -+...+.+.+++....+..++++|+..|.++|.+.|.                .+..+-+.|.+|.++|.|+.|++-.+.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3456668888899999999999999999999999988                677778899999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH
Q 020735          235 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  306 (322)
Q Consensus       235 Al~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e  306 (322)
                      ++.+.+.      ...+|..||.+|..+|++++|++.|+++|++      +|.......+|.++-.++++..
T Consensus       141 Al~iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLel------dP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALEL------DPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhcc------CCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999      9999999999999999999999999999999      8888888999999988888766

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.12  E-value=7.2e-10  Score=104.05  Aligned_cols=138  Identities=17%  Similarity=0.260  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..+.+.+.|..-+....+          .++...+..++-++|+.||-+|+|+.|+.+.+.-++++++.+|....-.++.
T Consensus       170 al~~Av~fy~eNL~l~~~----------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s  239 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEK----------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS  239 (639)
T ss_pred             HHHHHHHHHHHHHHHHHH----------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence            677788888888888888          7777778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |||+++.-+|+++.|+++|++.+.++.++++....+...|.||..|....++++|+.|+++=+.|+++
T Consensus       240 NlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  240 NLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             ccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988763

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.10  E-value=7.9e-09  Score=101.83  Aligned_cols=139  Identities=19%  Similarity=0.247  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a  251 (322)
                      +..+++..|++++.....        ........-+..+.++|..|+..|++++|..++++|+++....  .........
T Consensus       256 k~~eAv~ly~~AL~i~e~--------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~  327 (508)
T KOG1840|consen  256 KYDEAVNLYEEALTIREE--------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ  327 (508)
T ss_pred             cHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence            668888889999987654        1223445567789999999999999999999999999999873  344556777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.+++.++..++++++|+.++++++++....  .+++..+..+.+||.+|...|+|++|.++|++|+++.+
T Consensus       328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853  34446888999999999999999999999999999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.10  E-value=7.1e-09  Score=95.78  Aligned_cols=148  Identities=20%  Similarity=0.284  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          160 QRVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  238 (322)
Q Consensus       160 ~~l~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l  238 (322)
                      ..+.++....+... +.+.+.+.|.++......          .++....+..+...+.+|... ++++|+++|++|+++
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~  103 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI  103 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH
Confidence            34444444444444 778888888888887765          455555666777777777666 999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          239 AQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       239 ~~~~~d~~~~~~a~~~LG~~~~~~-gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      +...++....+.++..+|.+|... |++++|+++|++|+++.+..+.......++..+|.++..+|+|++|++.|++...
T Consensus       104 y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  104 YREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999999999999999999 9999999999999999999887777888999999999999999999999999876


Q ss_pred             h
Q 020735          318 R  318 (322)
Q Consensus       318 i  318 (322)
                      .
T Consensus       184 ~  184 (282)
T PF14938_consen  184 K  184 (282)
T ss_dssp             T
T ss_pred             H
Confidence            4

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.1e-09  Score=103.96  Aligned_cols=100  Identities=26%  Similarity=0.340  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      +..+++.+|..|-..+-+.-|+-+|++|+++-|.      ....+..||.+|.+.++.++|+++|..|+..      ...
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~------~dt  464 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWVALGECYEKLNRLEEAIKCYKRAILL------GDT  464 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHhccHHHHHHHHHHHHhc------ccc
Confidence            7778888899988888888888899998888887      7888888999999999999999999998877      444


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ...+++.||.+|.++++.++|..+|++.++..
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999988743

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.07  E-value=4.9e-09  Score=89.15  Aligned_cols=108  Identities=18%  Similarity=0.253  Sum_probs=89.1

Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      .....+..++.+|.++...|++++|+..|++++.+.+.   +...+.++.++|.++...|++++|+.++++++++     
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----  101 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----  101 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            34446788899999999999999999999999998543   3335668999999999999999999999999988     


Q ss_pred             CCchHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhhh
Q 020735          284 EYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       284 d~~~~a~a~~~Lg~~y~-------~~gd~e~A~~~~~kAl~i~e  320 (322)
                       .+.....+.++|.+|.       .+|++++|..++++++..++
T Consensus       102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  144 (168)
T CHL00033        102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK  144 (168)
T ss_pred             -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence             5555666777777777       88999988888887776543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=3.3e-09  Score=100.83  Aligned_cols=118  Identities=19%  Similarity=0.340  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.|.++..|++++.+.|.                ...++--+|.-|....+-..|++.|++|+++.|.      .-.++|
T Consensus       345 eHEKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWY  402 (559)
T KOG1155|consen  345 EHEKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWY  402 (559)
T ss_pred             hHHHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHh
Confidence            558888999999998887                6677778899999999999999999999999999      999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +||..|-.++.+.=|+-+|++|+++      .|.....+..||.||.++++.++|++.|.+|+..-
T Consensus       403 GLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  403 GLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             hhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999      89999999999999999999999999999998654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=3.8e-10  Score=111.10  Aligned_cols=116  Identities=19%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                .++++--+|.-+..+.+||+|..+|++|+...++      .-.|||
T Consensus       436 dh~~Aik~f~RAiQldp~----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------hYnAwY  493 (638)
T KOG1126|consen  436 DHDTAIKCFKRAIQLDPR----------------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------HYNAWY  493 (638)
T ss_pred             HHHHHHHHHHHhhccCCc----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------hhHHHH
Confidence            556777777777776664                2223333344444444444444444444444444      444444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      +||.+|.++++++.|.-+|++|+++      +|........+|..+..+|+.++|+.+|++|+.
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcC------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            4444444444444444444444444      444444444444444444444444444444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.03  E-value=2.6e-09  Score=101.96  Aligned_cols=98  Identities=15%  Similarity=0.176  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      +...|...+..|+|++|+++|.+++++.+.      ...+++++|.+|..+|++++|+..+++++++      .+..+.+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHH
Confidence            456789999999999999999999999988      7889999999999999999999999999999      8888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |+++|.+|..+|+|++|+.+|++++++.+.
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAPG  102 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999987654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.03  E-value=5.1e-09  Score=77.30  Aligned_cols=73  Identities=21%  Similarity=0.342  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      .+.++.++|.+|..+|++++|+++|++++++....++.. ..+.++.++|.++..+|++++|++++++++++.+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            466889999999999999999999999999988888765 4689999999999999999999999999999865

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.01  E-value=1.1e-08  Score=87.45  Aligned_cols=107  Identities=19%  Similarity=0.332  Sum_probs=86.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      .+....+..++.+|..+...|++++|+.+|++++++.+...   ....++.++|.++...|++++|+.++++++++    
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  101 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALEL----  101 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            34455778899999999999999999999999999876522   23568999999999999999999999999998    


Q ss_pred             CCCchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh
Q 020735          283 GEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISR  318 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~gd-------~e~A~~~~~kAl~i  318 (322)
                        .+....++..+|.+|...|+       +++|...|+++++.
T Consensus       102 --~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~  142 (172)
T PRK02603        102 --NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY  142 (172)
T ss_pred             --CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence              67677888899999988776       44444444444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.01  E-value=1.3e-08  Score=88.43  Aligned_cols=98  Identities=21%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...+..+|.++...|++++|...+.++++..+.      ...++..+|.++...|++++|+.+++++++.      .+..
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~  202 (234)
T TIGR02521       135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYLRGQYKDARAYLERYQQT------YNQT  202 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence            446777899999999999999999999988766      5667888999999999999999999998887      3445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ...+..++.++...|++++|..+.+.....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       203 AESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            666778889999999999999888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.00  E-value=3.2e-09  Score=77.96  Aligned_cols=98  Identities=27%  Similarity=0.394  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +++.+|..+...|++++|+..++++++..+.      ...+++.+|.++...+++++|++++++++.+      .+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAK   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchh
Confidence            4677899999999999999999999998776      4578899999999999999999999999987      555557


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++..+|.++...|++++|..+++++++..+
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            899999999999999999999999987653

>PRK12370 invasion protein regulator; Provisional

Probab=99.00  E-value=4.3e-09  Score=106.09  Aligned_cols=95  Identities=17%  Similarity=-0.018  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ++..+|.++...|++++|+..|++++++.|.      .+.+++++|.++...|++++|+..+++++++      +|....
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l------~P~~~~  407 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKL------DPTRAA  407 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCChh
Confidence            3444444444445555555555555444444      4444444454444455555555555554444      333333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      +++.++.++...|++++|+..++++++
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~  434 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRS  434 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            333333334444444445444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.99  E-value=5.3e-09  Score=111.09  Aligned_cols=101  Identities=15%  Similarity=0.216  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...+.++|.++...|++++|+..|++++++.|+      ...++.++|.++...|++++|++.|++++++      .|..
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------~P~~  676 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKG------LPDD  676 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCC
Confidence            346788999999999999999999999999998      8889999999999999999999999999999      8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +.+++++|.++..+|++++|+.+|++++++.++
T Consensus       677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999987653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.99  E-value=5.9e-09  Score=86.69  Aligned_cols=109  Identities=8%  Similarity=0.013  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      .......++.+.++..|++++...|.                ...++..+|.++...|++++|+..|++++++.+.    
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~----   90 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS----   90 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----
Confidence            33444455778899999999988877                6778999999999999999999999999999998    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  302 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~  302 (322)
                        .+.+++++|.++...|++++|++.|++++++      .|..+..+.++|.+...+
T Consensus        91 --~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~------~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         91 --HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM------SYADASWSEIRQNAQIMV  139 (144)
T ss_pred             --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHH
Confidence              8999999999999999999999999999999      888888888888877654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=3.7e-09  Score=102.56  Aligned_cols=125  Identities=22%  Similarity=0.298  Sum_probs=106.1

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAAR  253 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-~~~~a~~  253 (322)
                      .+-+-.-|..++.++|.                +......+|.+.+..+.|.+|..+|+++++..+...... ...-.+.
T Consensus       396 ~kLAe~Ff~~A~ai~P~----------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  396 LKLAEKFFKQALAIAPS----------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHHHHHHHHHHHhcCCC----------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            34455566777777766                455677899999999999999999999998777765443 3455689


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |||+++++++.+++||.+|+++|.+      .+..+.++..+|.+|..+|+++.|+++|.+|+.+.+.
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLL------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHc------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999      8888999999999999999999999999999987654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.99  E-value=4.3e-08  Score=96.71  Aligned_cols=138  Identities=15%  Similarity=0.130  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--hHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKK-EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD--PIEEKK  250 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~-~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d--~~~~~~  250 (322)
                      +.+++...|++++.....         ..+... ..+....++|..|+..|+|++|.+.|++|+.+.++..+  ......
T Consensus       340 ~~Eea~~l~q~al~i~~~---------~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~  410 (508)
T KOG1840|consen  340 EYEEAKKLLQKALKIYLD---------APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK  410 (508)
T ss_pred             chhHHHHHHHHHHHHHHh---------hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence            668888888888887653         122222 45667788999999999999999999999999988766  456788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~-~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+++||..|.+.+++.+|...|.+++.+.+.. .+.++....|.|||.+|..+|++++|.++-++++...+
T Consensus       411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~  481 (508)
T KOG1840|consen  411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE  481 (508)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999654 46778889999999999999999999999999986543

>PRK12370 invasion protein regulator; Provisional

Probab=98.98  E-value=7.4e-09  Score=104.40  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...+++.+|.++...|++++|+..+++++++.|.      ...+++.++.+++..|++++|+..++++++.     .++.
T Consensus       371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~  439 (553)
T PRK12370        371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQD  439 (553)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-----cccc
Confidence            3456788999999999999999999999999887      4445556676788899999999999998766     1355


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .+.++.++|.+|..+|++++|...+++....
T Consensus       440 ~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        440 NPILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence            6778999999999999999999999887544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.97  E-value=1e-08  Score=80.85  Aligned_cols=106  Identities=24%  Similarity=0.243  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      ..++.+|..+...|++++|+..|.++++..+.   ......+++.+|.++...|++++|+.+|++++...+   +.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~   76 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP   76 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence            35788999999999999999999999987653   233467889999999999999999999999987722   233346


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+++.+|.++...|++++|..+++++++..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            78999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.96  E-value=4.6e-09  Score=75.56  Aligned_cols=66  Identities=30%  Similarity=0.451  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRL  319 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g-d~e~A~~~~~kAl~i~  319 (322)
                      .+.++..+|.+++..|+|++|+.+|++++++      +|..+.+++++|.+|..+| ++++|++++++++++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            3567999999999999999999999999999      8999999999999999999 7999999999999875

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.96  E-value=1.5e-08  Score=94.34  Aligned_cols=128  Identities=15%  Similarity=0.059  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      ..+.+......++.+.++..|++++...|.                ...+++.+|.++...|++++|+..|++++++.|+
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  130 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPD----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT  130 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            334444444445778899999999998877                5778999999999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                            ...++.++|.+++..|++++|++.+++++++      .|..+.. .....+....+++++|...+++++..
T Consensus       131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~------~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQD------DPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence                  7889999999999999999999999999988      4443321 11122345678999999999887654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.95  E-value=7.5e-09  Score=77.72  Aligned_cols=84  Identities=26%  Similarity=0.397  Sum_probs=70.4

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735          221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  300 (322)
Q Consensus       221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~  300 (322)
                      .+|+|++|+.+++++++..+.  +.  ....++++|.++++.|+|++|++.+++ ++.      .+....+.+.+|.++.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLL   69 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHH
Confidence            368999999999999999885  11  455677899999999999999999999 555      5556777888899999


Q ss_pred             HcCCHHHHHHHHHHH
Q 020735          301 ELGDLERAARFYDKY  315 (322)
Q Consensus       301 ~~gd~e~A~~~~~kA  315 (322)
                      .+|++++|++.+++|
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999886

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=9.9e-10  Score=106.76  Aligned_cols=103  Identities=20%  Similarity=0.205  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      .+..++..+|..|+..++|++|+++|+.||...|.      ....|+.||.++..-.+..+||..|++|+++      .|
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP  495 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQL------QP  495 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CC
Confidence            34557788999999999999999999999999998      8889999999999999999999999999999      99


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +...+.||||.+|+.+|.|++|.++|-.||.+-++
T Consensus       496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999987653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.94  E-value=6.7e-07  Score=81.77  Aligned_cols=106  Identities=15%  Similarity=0.187  Sum_probs=91.3

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          210 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       210 ~~~~~la~~y-~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...+..|..+ +..|+|++|+..|++.++.+|+   ..+...+++++|.+|+..|+|++|+..|+++++..+   +.+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcch
Confidence            4567777765 6679999999999999998886   344567899999999999999999999999887733   46668


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .++++.+|.+|..+|++++|...|++.++.+++
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            899999999999999999999999999987653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.93  E-value=1.2e-08  Score=89.40  Aligned_cols=100  Identities=17%  Similarity=0.167  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      .+-+.+.+.+|.-|+..|++..|...+++|++.+|+      ...++..++.+|...|+.+.|-+.|++|+.+      .
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------~   99 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSL------A   99 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------C
Confidence            345667888999999999999999999999999999      8899999999999999999999999999999      8


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      |...++++|-|+-...+|++++|..+|++|+.
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            88899999999999999999999999999985

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.93  E-value=1.6e-07  Score=78.02  Aligned_cols=99  Identities=26%  Similarity=0.298  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...+.+.+|..++..|++++|...|+++++..   .+......+...|+.++...|+|++|+..++..       .+.+.
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~  116 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAF  116 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcch
Confidence            45678889999999999999999999999844   456667788999999999999999999999662       23455


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      .+.++..+|.+|...|++++|+..|++||
T Consensus       117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  117 KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            67788899999999999999999999985

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=2.1e-08  Score=102.86  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+++...++.++..+|.                ...+..+.|.+..+.+++++|+..+++++...++      ...++
T Consensus       100 g~~~ea~~~l~~~~~~~Pd----------------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~  157 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRFPD----------------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREI  157 (694)
T ss_pred             CCcHHHHHHHHHHHhhCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHH
Confidence            3778899999999999998                7889999999999999999999999999999999      89999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.+|.++...|+|++|++.|++++.-      .+..+.++..+|.++...|+.++|...|+++++...
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999885      777889999999999999999999999999998753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=4.5e-09  Score=103.66  Aligned_cols=119  Identities=14%  Similarity=0.158  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .+.+...|++++...+.                ...+|+.+|.+|.++++++.|+-+|++|+++.|.      .......
T Consensus       471 ~d~a~~~fr~Al~~~~r----------------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~  528 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPR----------------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCH  528 (638)
T ss_pred             HHhHHHHHHhhhcCCch----------------hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhh
Confidence            34555556666655544                7789999999999999999999999999999998      8888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +|.++.+.|+.++|+..|++|+.+      ++..+.+.+..|.++..++++++|...+++.-+++++
T Consensus       529 ~g~~~~~~k~~d~AL~~~~~A~~l------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~  589 (638)
T KOG1126|consen  529 IGRIQHQLKRKDKALQLYEKAIHL------DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ  589 (638)
T ss_pred             hhHHHHHhhhhhHHHHHHHHHHhc------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999      8888899999999999999999999999988877654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.90  E-value=2.1e-08  Score=103.11  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ++..+|.++...|++++|+..+++++++.|.      ...++.++|.++...|++++|+..|+++++.      .|....
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------~P~~~~  353 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLARE------KGVTSK  353 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CccchH
Confidence            3444455555555555555555555544444      3444444555555555555555555554444      333333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .+..+|.++...|++++|+..|++++++
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3444455555555555555555555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.88  E-value=4.2e-08  Score=90.65  Aligned_cols=116  Identities=25%  Similarity=0.329  Sum_probs=100.1

Q ss_pred             cHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          205 KKEEL-LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       205 ~~~~a-~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      +...+ ..+...|..|...+++++|.+.|.++.++..+.++....+.++...+.+|.+. ++++|+++|++++++..+.+
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence            33343 45556888999999999999999999999999999999999999999888776 99999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 020735          284 EYSGSTEAYGAIADCYTEL-GDLERAARFYDKYISRLES  321 (322)
Q Consensus       284 d~~~~a~a~~~Lg~~y~~~-gd~e~A~~~~~kAl~i~e~  321 (322)
                      +....+.++..+|.+|... |++++|+++|++|+++++.
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999 9999999999999998864

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=5.1e-08  Score=86.98  Aligned_cols=141  Identities=15%  Similarity=0.107  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+...+.......+.+.++..+++.+...|..             .....+++.+|.+++..|++++|+..|+++++..|
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p  101 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFS-------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP  101 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence            44444555555667888899999988877651             11234678899999999999999999999999888


Q ss_pred             hCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCCchHHH--------------HHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYSGSTE--------------AYGAIADC  298 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~--------gd~~eAi~~~~kaL~l~~~~~d~~~~a~--------------a~~~Lg~~  298 (322)
                      +...   ...+++.+|.++...        |++++|++.+++++...+.   ......              ....+|.+
T Consensus       102 ~~~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~~a~~  175 (235)
T TIGR03302       102 NHPD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDYLRNRLAGKELYVARF  175 (235)
T ss_pred             CCCc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6332   345788999999876        8899999999999877332   111111              22478999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhh
Q 020735          299 YTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       299 y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      |...|++++|+..|+++++..+
T Consensus       176 ~~~~g~~~~A~~~~~~al~~~p  197 (235)
T TIGR03302       176 YLKRGAYVAAINRFETVVENYP  197 (235)
T ss_pred             HHHcCChHHHHHHHHHHHHHCC
Confidence            9999999999999999998764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.88  E-value=3.6e-08  Score=101.38  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHhCCC
Q 020735          169 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKD  244 (322)
Q Consensus       169 ~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~----Al~~~~kAl~l~~~~~d  244 (322)
                      +....+.++++..|++++...+.                ....++.+|..+...|++++    |+..|++++++.|.   
T Consensus       222 l~~~g~~~eA~~~~~~al~~~p~----------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---  282 (656)
T PRK15174        222 LCAVGKYQEAIQTGESALARGLD----------------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---  282 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---
Confidence            33444788999999999999877                56788899999999999996    89999999999988   


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       245 ~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                         ...++.++|.++...|++++|+.++++++++      .|..+.++.++|.+|...|++++|+..|+++++..+
T Consensus       283 ---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P  349 (656)
T PRK15174        283 ---NVRIVTLYADALIRTGQNEKAIPLLQQSLAT------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG  349 (656)
T ss_pred             ---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence               7889999999999999999999999999998      777888999999999999999999999999987543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.85  E-value=1.2e-08  Score=73.44  Aligned_cols=65  Identities=28%  Similarity=0.439  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQI  278 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g-d~~eAi~~~~kaL~l  278 (322)
                      .+..+..+|..++..|++++|+.+|++++++.+.      .+.+++++|.++..+| ++++|++++++++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            3567889999999999999999999999999998      8999999999999999 799999999999988

...

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.85  E-value=3.4e-07  Score=85.13  Aligned_cols=136  Identities=25%  Similarity=0.284  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--Ch--HHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DP--IEEK  249 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~--d~--~~~~  249 (322)
                      ..+.+++.|++++.++..          .++..-+..++..+|..|-...|+++|+.+..+|.++....+  |.  .+..
T Consensus       137 ~fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  137 VFQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             HHHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            447777888888887765          444444566778899999999999999999999999998875  32  3466


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .+++.++..+..+|....|.++.+++.+++-..+|.+..+.+...+|++|...||.|.|..-|+.|..+.
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999998754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.85  E-value=4.9e-08  Score=106.41  Aligned_cols=126  Identities=14%  Similarity=0.145  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH------
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------  247 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~------  247 (322)
                      +.++++..|++++...|.                ...++..+|.+|...|++++|+.+|++++++.++......      
T Consensus       284 ~~~~A~~~l~~aL~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPK----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            678888999999988776                5668899999999999999999999999998876433210      


Q ss_pred             --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          248 --EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       248 --~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                        .......+|.++...|++++|+..|++++++      +|....++..+|.+|...|++++|+++|++++++.+.
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence              1123446688999999999999999999999      7777889999999999999999999999999987543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.79  E-value=2.2e-07  Score=88.79  Aligned_cols=101  Identities=23%  Similarity=0.242  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....+..+|..+...|++++|+.+|+++++..+.      ...+++.+|.++...|++++|++.++++++.      .+.
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~  246 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQ------DPE  246 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------Chh
Confidence            3445667888888999999999999999887766      5667888899999999999999999998876      333


Q ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 -STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 -~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                       ...++..++.+|...|++++|...++++++..+
T Consensus       247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p  280 (389)
T PRK11788        247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP  280 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence             356678889999999999999999998887643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.78  E-value=5.9e-07  Score=85.83  Aligned_cols=106  Identities=18%  Similarity=0.203  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....+..+|..|...|++++|+..|+++++..+.      ...++..++.++...|++++|++.++++++..... ....
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~  178 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVE  178 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHH
Confidence            3456777888888888888888888888776444      56677888888888888888888888877652210 1112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ....+..+|.++...|++++|..+|+++++..+
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  211 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADP  211 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence            344667888888889999999999998887654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.77  E-value=8.2e-08  Score=91.64  Aligned_cols=114  Identities=12%  Similarity=0.170  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +..+........+.+.+++.|++++...+.                ....++++|.+|...|++++|+..+++++++.+.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            344455556666889999999999998877                5678899999999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                            ...+++.+|.+++.+|+|++|+.+|++++++      .+....+...++.+...+.
T Consensus        69 ------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         69 ------LAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHH
Confidence                  7889999999999999999999999999999      7777888888888876663

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.75  E-value=1.6e-07  Score=99.94  Aligned_cols=119  Identities=10%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.++++..|++++...+.                .......++......|++++|+..|++++++.|.       ..++.
T Consensus       557 d~~eA~~~l~qAL~l~P~----------------~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~  613 (987)
T PRK09782        557 NGAARDRWLQQAEQRGLG----------------DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYV  613 (987)
T ss_pred             CHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHH
Confidence            566677777777765543                2233334566666779999999999999998873       45789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++.+.|++++|+..|++++++      .|..+.++.++|.++...|++++|+..|++++++.++
T Consensus       614 ~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        614 ARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999      8888999999999999999999999999999987654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.75  E-value=1.4e-07  Score=102.96  Aligned_cols=125  Identities=14%  Similarity=0.173  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH------
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------  247 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~------  247 (322)
                      +.++++..|++++...|.                ...+++.+|.++...|++++|++.|++++++.+.......      
T Consensus       366 ~~~eA~~~~~~Al~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        366 NLAQAERLYQQARQVDNT----------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            567788888888887766                4567888999999999999999999999988765321110      


Q ss_pred             ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735          248 ------------------------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  297 (322)
Q Consensus       248 ------------------------------~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~  297 (322)
                                                    ....+..+|..+...|++++|++.|++++++      .|..+.+++.+|.
T Consensus       430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~LA~  503 (1157)
T PRK11447        430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRLAQ  503 (1157)
T ss_pred             HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Confidence                                          0122345677788899999999999999999      7888889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhh
Q 020735          298 CYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       298 ~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|...|++++|+..++++++..+
T Consensus       504 ~~~~~G~~~~A~~~l~~al~~~P  526 (1157)
T PRK11447        504 DLRQAGQRSQADALMRRLAQQKP  526 (1157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999987654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=5.6e-08  Score=93.17  Aligned_cols=120  Identities=21%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+..+..|.++..+.|.                ...+++..|..++-.++|++|+.-|++++++.|+      ...++.
T Consensus       375 ~~~~~~~~F~~A~~ldp~----------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~i  432 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPE----------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYI  432 (606)
T ss_pred             ccHHHHHHHHHHHhcCCC----------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHH
Confidence            456666777777777766                4558899999999999999999999999999999      999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .++...++++++++++..|+.+++-      -|..+++|...|.+...++++++|.+.|++|+++-+.
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999988      8888999999999999999999999999999987653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.72  E-value=5e-08  Score=69.32  Aligned_cols=64  Identities=22%  Similarity=0.334  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      +.+|..++..|++++|++.|+++++.      .|....+++.+|.++..+|++++|+.+|++++++.+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            46889999999999999999999988      88899999999999999999999999999999987653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.71  E-value=2e-07  Score=96.83  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ..+++.+|.+|...|++++|+..|+++++..+.      ...++.++|.++...|+ .+|+.++++++++      .+..
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~------~~~~  836 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKL------APNI  836 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh------CCCC
Confidence            456677788888888888888888888777665      55666677777777777 6677777777666      4444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +..+..+|.+|...|++++|.++|+++++..+
T Consensus       837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            55666777777777777777777777776543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.70  E-value=3.7e-07  Score=93.84  Aligned_cols=98  Identities=11%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...++..+|.+....|.+++|+..++.+++++|+      ...+..+++.++.+++++++|...+++++..      .|.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~  152 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSS  152 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCC
Confidence            5678999999999999999999999999999999      9999999999999999999999999999999      899


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .+.+++.+|.+...+|++++|.+.|+++++
T Consensus       153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        153 SAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            999999999999999999999999999996

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.69  E-value=1.6e-07  Score=84.70  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      .|+.|.-++..|+|.+|...|...++.+|.   ..+.+.++|+||.+++.+|+|++|...|..+++   ..++.+..+++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence            789999999999999999999999997775   666888999999999999999999999999766   45667778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++.||.+...+|+.++|...|++.++.++
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999998765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.68  E-value=2.3e-07  Score=96.38  Aligned_cols=115  Identities=20%  Similarity=0.178  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.+++.|++.+...|.                ....+..+|..+...|+ ++|+.++++++++.+.      ....+.
T Consensus       785 ~~~~A~~~~~~~~~~~p~----------------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~------~~~~~~  841 (899)
T TIGR02917       785 DYDKAIKHYRTVVKKAPD----------------NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN------IPAILD  841 (899)
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC------CcHHHH
Confidence            456666666666665554                56678889999999999 8899999999998776      566788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .+|.++...|++++|+++|+++++.      .+..+.++.+++.++...|++++|.+.++++++
T Consensus       842 ~~~~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       842 TLGWLLVEKGEADRALPLLRKAVNI------APEAAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            9999999999999999999999998      666788999999999999999999999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.65  E-value=2.7e-07  Score=82.34  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.+|..++..|++++|+..+++++...|.   ......+++.+|.++...|++++|+..|+++++..+   +.+.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~  105 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPD  105 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCc
Confidence            5668899999999999999999999999987764   233456889999999999999999999999998743   2344


Q ss_pred             HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTEL--------GDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~--------gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...+++.+|.++...        |++++|.+.|+++++..++
T Consensus       106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302       106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            556899999999987        8999999999999876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.65  E-value=5.8e-07  Score=75.16  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          157 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  236 (322)
Q Consensus       157 ~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl  236 (322)
                      ..++.+....-.....++.+.+...|+-...+.+.                ....++++|.++...|+|.+|++.|.+++
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------SFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34556666666667777889999999999988887                77889999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          237 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       237 ~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      .+.++      .+.+++++|.++...|+.+.|.+.|+.++.++.
T Consensus        97 ~L~~d------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         97 QIKID------APQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             hcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            99998      899999999999999999999999999999974

>PRK15331 chaperone protein SicA; Provisional

Probab=98.64  E-value=2.7e-07  Score=77.55  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      +-+.......+..|..++..|++++|...|+-...+.+-      ...-+.+||.++..+++|++|+..|..+..+    
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l----  100 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL----  100 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            344557888999999999999999999999887776555      5666899999999999999999999999888    


Q ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                        ....+...+..|.||..+|+.++|...|+.+++.
T Consensus       101 --~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        101 --LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             --ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence              4444566889999999999999999999999863

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=1.1e-06  Score=78.44  Aligned_cols=96  Identities=24%  Similarity=0.254  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      ..+...|......|+|.+|+..++++..+.|.      ...++..+|.+|-+.|+.++|...|.+++++      .+..+
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L------~~~~p  168 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALEL------APNEP  168 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHh------ccCCc
Confidence            34444677777778888888888877777777      7777777788888888888888888887777      66666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .++.|+|..|...||++.|..++..+..
T Consensus       169 ~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         169 SIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7777788888888888877777777654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.1e-07  Score=90.59  Aligned_cols=127  Identities=22%  Similarity=0.305  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.++++..|..|-...+.                --.-.+.+|.-|...+++.-|..+|.+|+.++|.      .+..+.
T Consensus       361 EhdQAmaaY~tAarl~~G----------------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~  418 (611)
T KOG1173|consen  361 EHDQAMAAYFTAARLMPG----------------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLH  418 (611)
T ss_pred             hHHHHHHHHHHHHHhccC----------------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhh
Confidence            667888888888877765                1123567899999999999999999999999999      889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .+|.+.+..+.|.+|+.+|+++++..+...... .....+.|||.+|..++.+++|+.+|+++|.+.+++
T Consensus       419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999997776654333 355568999999999999999999999999876543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=6.6e-07  Score=79.92  Aligned_cols=125  Identities=18%  Similarity=0.129  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+..++.......++..++..++++....|.                +...+..+|.+|.+.|++++|-..|.+++++.+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~----------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT----------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCC----------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            3444566667777899999999999999888                778999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      .      .+.+..|+|..|...||++.|..++..+...      .+....+-.|++.+-..+|++++|...-.
T Consensus       166 ~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         166 N------EPSIANNLGMSLLLRGDLEDAETLLLPAYLS------PAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             C------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            9      8899999999999999999999999998766      56567788999999999999999987543

>PLN02789 farnesyltranstransferase

Probab=98.63  E-value=1.2e-06  Score=82.44  Aligned_cols=118  Identities=11%  Similarity=0.079  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g-~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      +.+.++..+.+++...|.                ...++...+.++..++ ++++++..+.++++..++      ...++
T Consensus        52 ~serAL~lt~~aI~lnP~----------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW  109 (320)
T PLN02789         52 RSPRALDLTADVIRLNPG----------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIW  109 (320)
T ss_pred             CCHHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHh
Confidence            556777778888877776                5667777888888777 578888888888887777      66778


Q ss_pred             HHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          253 RGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       253 ~~LG~~~~~~gd~--~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++.+.++...++.  +++++++++++++      ++.+..++.+.++++...|++++|+++++++|++-
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d  172 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED  172 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence            8888777777763  6778888888877      77778888888888888888888888888887753

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=5.8e-07  Score=82.01  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      -+..+...+..+...|.                ++..+..+|.+|+.+|+++.|...|.+|+++.++      .+..+.+
T Consensus       138 ~~~l~a~Le~~L~~nP~----------------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g  195 (287)
T COG4235         138 MEALIARLETHLQQNPG----------------DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLG  195 (287)
T ss_pred             HHHHHHHHHHHHHhCCC----------------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHH
Confidence            34555566777777776                7788999999999999999999999999999999      8888899


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          255 LGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       255 LG~~~~~~g---d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +|.+++.+.   +..++...+++++..      ++....+.+.||..+.+.|+|.+|...++.-++..+.
T Consensus       196 ~aeaL~~~a~~~~ta~a~~ll~~al~~------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         196 LAEALYYQAGQQMTAKARALLRQALAL------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHhcCCcccHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            999888654   477899999999999      9999999999999999999999999999999987654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.62  E-value=1.4e-07  Score=67.02  Aligned_cols=60  Identities=27%  Similarity=0.442  Sum_probs=56.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      +.+|..++..|++++|+..|+++++..|.      ...+++.+|.++..+|++++|+.+|++++++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999999988      9999999999999999999999999999988

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.62  E-value=1.9e-07  Score=85.83  Aligned_cols=118  Identities=20%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...|.                +......++..+...|+++++.+.+....+..+.      .+..+.
T Consensus       161 ~~~~A~~~~~~al~~~P~----------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~  218 (280)
T PF13429_consen  161 DPDKALRDYRKALELDPD----------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWD  218 (280)
T ss_dssp             HHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCH
T ss_pred             CHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHH
Confidence            667777888888887776                4556666777777778888877777766665554      344566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .+|.++...|++++|+.+|+++++.      .|..+..+..+|.++...|+.++|...+++++...
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT-------------------
T ss_pred             HHHHHhccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc
Confidence            7788888888888888888888877      77777888888888888888888888888877654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.4e-07  Score=87.33  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPI-------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~-------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      .-..|+.|++.|+|..|...|++|+......  -+..       ....++.||+.+|.++++|.+|+.++.++|++    
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----  286 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----  286 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence            3457999999999999999999998876532  1111       12346889999999999999999999999999    


Q ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                        ++.+..++|.-|.++..+|+|+.|+..|++++++-+.
T Consensus       287 --~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  287 --DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             --CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence              9999999999999999999999999999999987653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.60  E-value=1.1e-06  Score=92.08  Aligned_cols=96  Identities=19%  Similarity=0.227  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ++..+|..+...|++++|++.+++++++.|.      ...++.+++.++...|++++|+..++++++.      .|..+.
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------~P~~~~  118 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSG------APDKAN  118 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH
Confidence            3444455555555555555555555554444      3334444555555555555555555555444      333333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                       +..+|.++...|++++|+..+++++++.
T Consensus       119 -~~~la~~l~~~g~~~~Al~~l~~al~~~  146 (765)
T PRK10049        119 -LLALAYVYKRAGRHWDELRAMTQALPRA  146 (765)
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence             4445555555555555555555554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.59  E-value=3.6e-07  Score=83.95  Aligned_cols=103  Identities=24%  Similarity=0.350  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....+...|.++...|+.++|+..|++++++.|+      ...+...++..+...|+++++.+.++...+..      +.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~  212 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD  212 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence            5667888999999999999999999999999998      88889999999999999999888888876663      33


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .+..+..+|.+|..+|++++|..+|++++...++|
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHHHHHhccccccccccccccccccccccc
Confidence            33467788999999999999999999999876654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.1e-06  Score=85.17  Aligned_cols=100  Identities=14%  Similarity=0.229  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +...-..|+.++..|+|..|+.+|.+++...|+      .+..|.|.+.+|.+++.+..|+...++++++      +|..
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~  425 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNF  425 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchH
Confidence            344455699999999999999999999999988      9999999999999999999999999999999      8999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+|..-|.++..+.+|++|.+.|+++++..+
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999997654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1e-06  Score=84.75  Aligned_cols=125  Identities=14%  Similarity=0.239  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++.+.|.                .+..+..++...|++++++++...|+++++..|.      .+..+.
T Consensus       409 q~e~A~aDF~Kai~L~pe----------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~  466 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLDPE----------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYN  466 (606)
T ss_pred             HHHHHHHHHHHHhhcChh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHH
Confidence            778999999999998887                5556666666666666666666666666666665      455555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------------------------cCCCchHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISER-----------------------------------EGEYSGSTEAYGAIADC  298 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~-----------------------------------~~d~~~~a~a~~~Lg~~  298 (322)
                      ..|.++..++++++|++.|++++++.+.                                   ..-+|..-.++..||.+
T Consensus       467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~  546 (606)
T KOG0547|consen  467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQF  546 (606)
T ss_pred             HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            5566666666666666666665554332                                   01156666788889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhh
Q 020735          299 YTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       299 y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      -..+|+.++|+++|++++.++.
T Consensus       547 ~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  547 ELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4.1e-07  Score=85.76  Aligned_cols=134  Identities=21%  Similarity=0.236  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..+.++..|++++...|.-...    ...--.......+-..|+-.++.|+|.+|.+.|..++.+.|..  ..-.+..|.
T Consensus       218 ~~~ka~~hf~qal~ldpdh~~s----k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~  291 (486)
T KOG0550|consen  218 NADKAINHFQQALRLDPDHQKS----KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYG  291 (486)
T ss_pred             chHHHHHHHhhhhccChhhhhH----HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHH
Confidence            5577888899999887761000    0001112244556668999999999999999999999999973  334678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      |.+.+..++|+.++|+...+.++++      ++....+|...|.||..+++|++|.++|+++++.-
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999      89999999999999999999999999999998753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.52  E-value=5e-06  Score=66.93  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +.+..|..+...|+.++|+.+|+++++..  + +......++.++|.++...|++++|+..+++++.-   .++++....
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHH
Confidence            57889999999999999999999998842  2 23345678999999999999999999999998754   233333566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      ....++.+....|++++|+..+-.++
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            67778999999999999999887665

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.50  E-value=4.5e-07  Score=92.97  Aligned_cols=122  Identities=19%  Similarity=0.181  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..+.|++.|.++|...|.                .+++.+.+|.++...|++.+|.+.|.++.+-..+      ...+|.
T Consensus       627 ~~~KAlq~y~kvL~~dpk----------------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~l  684 (1018)
T KOG2002|consen  627 HQEKALQLYGKVLRNDPK----------------NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWL  684 (1018)
T ss_pred             HHHHHHHHHHHHHhcCcc----------------hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceee
Confidence            446788888888888877                8889999999999999999999999999987775      567889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |+|++|..+|+|..||+.|+.++.-.-    .......+..||.++...|++.+|.++..+|+...+.
T Consensus       685 Nlah~~~e~~qy~~AIqmYe~~lkkf~----~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  685 NLAHCYVEQGQYRLAIQMYENCLKKFY----KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS  748 (1018)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999987754    3345778999999999999999999999999887654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.49  E-value=3.9e-06  Score=87.91  Aligned_cols=136  Identities=14%  Similarity=0.031  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.++++..+++.....|..... .......++.....+.+.+|..+...|++++|++.+++++...|.      ...++.
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~-~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~  397 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRL-YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRI  397 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEee-cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            5566666666666554431000 001112333345567788999999999999999999999999988      778999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .+|.++...|++++|++.+++++++      .|....+++.+|.++..+|++++|...++++++..+++
T Consensus       398 ~lA~l~~~~g~~~~A~~~l~~al~l------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        398 DYASVLQARGWPRAAENELKKAEVL------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999      78888899999999999999999999999999876643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=2.9e-06  Score=80.15  Aligned_cols=152  Identities=17%  Similarity=0.236  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          154 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK  233 (322)
Q Consensus       154 ~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~  233 (322)
                      .+.....+..+.+..+++..++..|...|++++.+..........+ ..........+++|++.+|.++++|.+|+..-.
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee-~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~  281 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEE-QKKAEALKLACHLNLAACYLKLKEYKEAIESCN  281 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHH-HHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence            3455556777888899999999999999999998765310000000 000111234578999999999999999999999


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 020735          234 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFY  312 (322)
Q Consensus       234 kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A-~~~~  312 (322)
                      ++|++.+.      ...++|.-|.++..+|+|+.|+..|++++++      .|.+-.+...|..+.....++.+. .+.|
T Consensus       282 kvLe~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  282 KVLELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             HHHhcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999      9999999999999999999999999999999      777777777887777776666544 7777


Q ss_pred             HHHHHh
Q 020735          313 DKYISR  318 (322)
Q Consensus       313 ~kAl~i  318 (322)
                      .+....
T Consensus       350 ~~mF~k  355 (397)
T KOG0543|consen  350 ANMFAK  355 (397)
T ss_pred             HHHhhc
Confidence            776654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=1.3e-06  Score=83.31  Aligned_cols=103  Identities=23%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+.++.+.|++-+..|++++|.+.|++++.-...      ...+++|+|..+-.+|+.++|+++|-+.-.+      ...
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas------c~ealfniglt~e~~~~ldeald~f~klh~i------l~n  556 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS------CTEALFNIGLTAEALGNLDEALDCFLKLHAI------LLN  556 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------HHh
Confidence            4566777888888899999999999988875555      7788999999999999999999999887777      445


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .+.+++.++.+|..+.+..+|++++-++..+.++|
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence            67888889999999999999999998888777654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=3.2e-06  Score=73.02  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+-.-|+.++..|+|.+|..-|..|+++.|.... ...+..|.|.|.+..+++.++.||+.+.++|++      .|....
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~k  169 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEK  169 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHH
Confidence            4445699999999999999999999999987544 456677889999999999999999999999999      898999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++...|.+|.+...|++|++.|++.+++.+
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999987654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.42  E-value=2.1e-06  Score=81.09  Aligned_cols=102  Identities=21%  Similarity=0.202  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .......+|.++...|++++|+..+++++++.++      ...++..+|.+++..|++++|+.+++++++..+.  +...
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~  184 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSML  184 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccch
Confidence            4556677899999999999999999999999988      6788999999999999999999999999887432  1122


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ....+..+|.++...|++++|...|++++.
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            345678899999999999999999999864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.41  E-value=5e-06  Score=67.37  Aligned_cols=90  Identities=14%  Similarity=0.162  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735          167 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       167 ~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      .......+.+.+.+.+++++...+.                ....+..+|.++...|++++|+..++++++..+.     
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----   83 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPY----------------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-----   83 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence            3344444667788888888877665                5668889999999999999999999999998877     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                       ....++++|.++...|++++|+..+++++++
T Consensus        84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        84 -DPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             7888999999999999999999999999998

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.38  E-value=8.4e-06  Score=65.87  Aligned_cols=100  Identities=20%  Similarity=0.185  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+-..|......|+.+.|++.|.+++.++|+      .+.+|+|.+..+..+|+.++|++.++++++++...  ......
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq  116 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ  116 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence            3445678888899999999999999999998      89999999999999999999999999999995421  123456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ++...|.+|..+|+-+.|...|+.|-++
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            7889999999999999999999998764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=9.3e-06  Score=74.89  Aligned_cols=138  Identities=17%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCC----CCccccccCCcH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSR----IPEDEVIVDPKK--------------EELLSRLKTGKNFLRNQDLEKAFTEFKAA  235 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~----~~~~~~~~~~~~--------------~~a~~~~~la~~y~~~g~~~~Al~~~~kA  235 (322)
                      +.+.+++.|+.+++..+....    ++-.....++.+              .......++|.+++..+++|-++..|++|
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA  384 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA  384 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence            667788888888877654211    111111111111              02235678999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          236 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       236 l~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                      +..+..   +...++.|||||.+....||+.-|..+|+-++.-      ++...++++|||..-...|+.++|..+++.|
T Consensus       385 lstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  385 LSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence            997764   2336778999999999999999999999999877      8889999999999999999999999999988


Q ss_pred             HHhhh
Q 020735          316 ISRLE  320 (322)
Q Consensus       316 l~i~e  320 (322)
                      -+..+
T Consensus       456 ~s~~P  460 (478)
T KOG1129|consen  456 KSVMP  460 (478)
T ss_pred             hhhCc
Confidence            76543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.35  E-value=3e-06  Score=74.24  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=80.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HH
Q 020735          222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YT  300 (322)
Q Consensus       222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~-y~  300 (322)
                      .++.++++..++++++..|+      ...++..||.+|...|++++|+..|++++++      .|..+.++.++|.+ |.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Confidence            56778999999999999998      8899999999999999999999999999999      88889999999997 47


Q ss_pred             HcCC--HHHHHHHHHHHHHhhhc
Q 020735          301 ELGD--LERAARFYDKYISRLES  321 (322)
Q Consensus       301 ~~gd--~e~A~~~~~kAl~i~e~  321 (322)
                      ..|+  +++|.+.+++++++-++
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~  142 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDAN  142 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCC
Confidence            7787  59999999999987654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.34  E-value=9.1e-06  Score=66.88  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...++..|...+..|+|++|++.|+......|-   ......+...|+.+|+..++|++|+..+++-|++.+   .++..
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCc
Confidence            457788999999999999999999998876654   455667899999999999999999999999999944   35567


Q ss_pred             HHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGD---------------LERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd---------------~e~A~~~~~kAl~i~e~  321 (322)
                      ..+++..|.++..+.+               ..+|...|++.++.+++
T Consensus        84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence            8899999999999987               88999999999887764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.33  E-value=8e-06  Score=71.77  Aligned_cols=108  Identities=18%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....++..|..++..|+|++|+..|++.+...|.   +.....+.+.+|.+++..|+|++|+..+++.++..+   +.+.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---~~~~   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---NSPK   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---T-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcc
Confidence            4567889999999999999999999999998775   445677899999999999999999999999887744   4666


Q ss_pred             HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELG-----------DLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~g-----------d~e~A~~~~~kAl~i~e~  321 (322)
                      ...+++.+|.++..+.           ...+|...|+..++.+++
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            8889999999976653           334788888888877654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=5.4e-06  Score=86.60  Aligned_cols=122  Identities=16%  Similarity=0.092  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV----------  242 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~----------  242 (322)
                      .+.++++.....++...|.                .+..++.+|.+++..+++++|...  +++.+.+..          
T Consensus        45 ~~~deai~i~~~~l~~~P~----------------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~  106 (906)
T PRK14720         45 NLTDEAKDICEEHLKEHKK----------------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC  106 (906)
T ss_pred             CCHHHHHHHHHHHHHhCCc----------------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence            3667777777778877777                666788888898888888877665  445444332          


Q ss_pred             ---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          243 ---KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       243 ---~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                         ++......+++.||.+|-++|++++|+..|++++++      ++..+.+++++|..|... +.++|.+++.+|+..+
T Consensus       107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence               122224478999999999999999999999999999      899999999999999999 9999999999999764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=2.1e-06  Score=81.87  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      -..+++++|..+-.+|+.++|+++|-+.-.+...      .+..++.++.+|-.+.+..+||+++.++..+      -|.
T Consensus       523 c~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~sl------ip~  590 (840)
T KOG2003|consen  523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSL------IPN  590 (840)
T ss_pred             HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc------CCC
Confidence            4568999999999999999999999999888888      8899999999999999999999999999887      677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .+..+..||.+|...||..+|..++-...+.+
T Consensus       591 dp~ilskl~dlydqegdksqafq~~ydsyryf  622 (840)
T KOG2003|consen  591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYF  622 (840)
T ss_pred             CHHHHHHHHHHhhcccchhhhhhhhhhccccc
Confidence            77888889999999998888887765555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.32  E-value=2.3e-06  Score=82.41  Aligned_cols=64  Identities=22%  Similarity=0.280  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST---EAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a---~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ...+++|+|.+|+..|+|++|+..|+++|++      +|...   .+|+|+|.+|..+|++++|++++++|++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555      33333   2355555555555555555555555554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.31  E-value=7.2e-06  Score=61.35  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++.+...+.             +. ....++.+|.+|+..|+|++|+..+++ .+..+.      .....+
T Consensus         4 ~y~~Ai~~~~k~~~~~~~-------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~   62 (84)
T PF12895_consen    4 NYENAIKYYEKLLELDPT-------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHY   62 (84)
T ss_dssp             -HHHHHHHHHHHHHHHCG-------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCC-------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHH
Confidence            456677778888776653             11 344677799999999999999999999 767666      677788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      .+|.++..+|+|++|++.++++
T Consensus        63 l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   63 LLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHhcC
Confidence            8899999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.30  E-value=1.6e-05  Score=71.94  Aligned_cols=107  Identities=11%  Similarity=0.000  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ....+..|..++..|+|++|++.|++.+..+|.   +.....+.+++|.+|++.++|++|+..+++.++..+   +++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P---~~~~~  105 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNI  105 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---CCCch
Confidence            445778899999999999999999999997775   456677789999999999999999999999988844   46678


Q ss_pred             HHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELG---------------DL---ERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~g---------------d~---e~A~~~~~kAl~i~e~  321 (322)
                      ..+++.+|.++..++               |.   .+|...+++.++.+++
T Consensus       106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~  156 (243)
T PRK10866        106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN  156 (243)
T ss_pred             HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence            899999999876554               22   4677888888877653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.28  E-value=1.1e-05  Score=76.18  Aligned_cols=122  Identities=15%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.+...+++++...|.                ...++.. +..+...+++..+.....+++..  ..........++.
T Consensus        58 ~~~~A~~~~~~~l~~~P~----------------~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~  118 (355)
T cd05804          58 DLPKALALLEQLLDDYPR----------------DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLG  118 (355)
T ss_pred             CHHHHHHHHHHHHHHCCC----------------cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHH
Confidence            566778888888887765                2233333 66666666666666666666554  2223333566778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+|.++..+|++++|+..+++++++      .|..+.++..+|.+|...|++++|..+++++++..+
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            8999999999999999999999999      666788899999999999999999999999988653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=98.28  E-value=6.4e-05  Score=73.07  Aligned_cols=117  Identities=16%  Similarity=0.126  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH-HHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK-KAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~-~a~  252 (322)
                      +.+.+.....++....+.                ....++..|..+..+|++++|.++++++.+..+.      .. .+.
T Consensus        99 ~~~~A~~~l~~~~~~~~~----------------~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~------~~l~~~  156 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAAE----------------PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN------DNILVE  156 (409)
T ss_pred             CHHHHHHHHHHHhhcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------CchHHH
Confidence            556666666665554443                3445667899999999999999999999876664      21 233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ...+.++...|++++|...+++.++.      .|..+.++..++.+|...||+++|.+.+++.++.
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            44588999999999999999999888      7777889999999999999999999999888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.28  E-value=1.6e-05  Score=67.73  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .........+.+++++|..+...|++++|+.+|++++++...   .+..+.++.++|.+|...|++++|+.+|++++++.
T Consensus        26 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  102 (172)
T PRK02603         26 LPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN  102 (172)
T ss_pred             cccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344555667888999999999999999999999999987432   22346789999999999999999999999999875


Q ss_pred             h
Q 020735          320 E  320 (322)
Q Consensus       320 e  320 (322)
                      +
T Consensus       103 p  103 (172)
T PRK02603        103 P  103 (172)
T ss_pred             c
Confidence            4

>PLN02789 farnesyltranstransferase

Probab=98.24  E-value=2.4e-05  Score=73.60  Aligned_cols=119  Identities=12%  Similarity=0.033  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~--~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .++++..+.+++...++                ...++...+.++...++.  +++++++.+++++.++      ...++
T Consensus        88 l~eeL~~~~~~i~~npk----------------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW  145 (320)
T PLN02789         88 LEEELDFAEDVAEDNPK----------------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAW  145 (320)
T ss_pred             HHHHHHHHHHHHHHCCc----------------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHH
Confidence            46778888888888777                566788888888888874  7889999999999998      89999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~---gd~----e~A~~~~~kAl~i~e~  321 (322)
                      .+.|.++...|+|++|++++.++|++      ++....+|+..+.+....   |++    ++++.+..++|.+.++
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~  215 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEE------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR  215 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHH------CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999      888899999999998876   333    5788888899987654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=3.9e-06  Score=77.32  Aligned_cols=125  Identities=11%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----------  242 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-----------  242 (322)
                      +.+.++..+.+.++..|.                +...+...|.++-..+++++|+++|+.++++.+..           
T Consensus       271 QP~~AL~~~~~gld~fP~----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y  334 (478)
T KOG1129|consen  271 QPERALLVIGEGLDSFPF----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY  334 (478)
T ss_pred             cHHHHHHHHhhhhhcCCc----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence            445566666666665554                34444455555555555555555555555544330           


Q ss_pred             --CChH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCH
Q 020735          243 --KDPI---------------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL  305 (322)
Q Consensus       243 --~d~~---------------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~  305 (322)
                        ++.+               ..++.++|+|.+....++++-++..|++++..+..   +...+++|||||.+....||+
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccch
Confidence              0000               03445666666666666677777777666666442   223456677777777777777


Q ss_pred             HHHHHHHHHHHH
Q 020735          306 ERAARFYDKYIS  317 (322)
Q Consensus       306 e~A~~~~~kAl~  317 (322)
                      .-|...|+-++.
T Consensus       412 nlA~rcfrlaL~  423 (478)
T KOG1129|consen  412 NLAKRCFRLALT  423 (478)
T ss_pred             HHHHHHHHHHhc
Confidence            777766666653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.24  E-value=5e-05  Score=80.75  Aligned_cols=113  Identities=14%  Similarity=0.046  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC--
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--  285 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~--  285 (322)
                      ...+...+|.++...|++++|...+++++...+..++......++.++|.++...|++++|..++++++++....+..  
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            445667899999999999999999999999999888887778889999999999999999999999999998876532  


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.....+..+|.++...|++++|...+++++.+.+
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            33445567889999999999999999999987654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.24  E-value=1.6e-05  Score=79.36  Aligned_cols=119  Identities=15%  Similarity=0.070  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHhCCChH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD--------LEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~--------~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      .+.+++.+++++...|.                .+.++-.++.+|.....        ..++.+..++++.+    ....
T Consensus       358 ~~~A~~lle~Ai~ldP~----------------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al----~~~~  417 (517)
T PRK10153        358 LNKASDLLEEILKSEPD----------------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL----PELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc----ccCc
Confidence            45677777888877776                45555555565544322        22333333333332    1111


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+.++..+|..+...|++++|...+++|+++      .+. +.+|..+|.++...|++++|.+.|++|+.+-+
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL------EMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            13567888888999999999999999999999      664 68999999999999999999999999998754

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=2.5e-05  Score=75.37  Aligned_cols=98  Identities=22%  Similarity=0.232  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      +.+.+...+.++...++.++|.+.+++++.+.|.      ......++|..+.+.|++.+|+..++..+.-      +|.
T Consensus       339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~------~p~  406 (484)
T COG4783         339 NPYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFN------DPE  406 (484)
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCC
Confidence            4556667899999999999999999999999997      6777889999999999999999999988766      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .+..|..||..|..+|+-.+|...+.+++.
T Consensus       407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         407 DPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            788899999999998888888777766654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=7.7e-06  Score=80.10  Aligned_cols=115  Identities=17%  Similarity=0.273  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +++.++..|+.+|...|.                +...++.+|-..-...+..+|+..|++|+++.|.      ...+.|
T Consensus       445 efdraiDcf~~AL~v~Pn----------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~Ry  502 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPN----------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVRY  502 (579)
T ss_pred             HHHHHHHHHHHHHhcCCc----------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeeeh
Confidence            667788888888887777                7889999999999999999999999999999999      999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS----GSTEAYGAIADCYTELGDLERAAR  310 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~----~~a~a~~~Lg~~y~~~gd~e~A~~  310 (322)
                      |||.++..+|.|++|+++|-.||.+.++.....    ....+|-.|=.+....++.+.+..
T Consensus       503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            999999999999999999999999988732221    122445555566666666664443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.22  E-value=0.00033  Score=64.72  Aligned_cols=101  Identities=20%  Similarity=0.265  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +.-+=.+|..+....+.++|...+.+|++..++      .+.+-..+|.++...|+|++|++.++.+++-     ++...
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl  248 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYL  248 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHH
Confidence            334445888888899999999999999999998      8889999999999999999999999999887     34457


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.+...|..||..+|+.++...++.++.+...
T Consensus       249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            88899999999999999999999999887643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.21  E-value=5.2e-06  Score=60.04  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |..+|...++|++|++++++++.+      .|..+..+...|.+|..+|++++|.+.++++++..++
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999999      7888889999999999999999999999999987654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.21  E-value=1.8e-05  Score=62.05  Aligned_cols=97  Identities=18%  Similarity=0.117  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      +.......+.+.++..|.+.+...+.             ......+.+.+|.+++..|++++|+..|++++...+..   
T Consensus         9 ~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---   72 (119)
T TIGR02795         9 ALLVLKAGDYADAIQAFQAFLKKYPK-------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---   72 (119)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---
Confidence            34444445777788888888876654             01124577889999999999999999999999987652   


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .....+++.+|.++...|++++|+.+++++++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            223567899999999999999999999999988

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.21  E-value=6e-05  Score=63.87  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735          167 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       167 ~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      .......+.+.++..|++++...+.             ......++.++|.+|...|++++|+.++++++.+.+.     
T Consensus        43 ~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-----  104 (168)
T CHL00033         43 MSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-----  104 (168)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----
Confidence            3333445778888999999876533             1124568899999999999999999999999998776     


Q ss_pred             HHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHc
Q 020735          247 EEKKAARGLGASLQ-------RQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       247 ~~~~a~~~LG~~~~-------~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                       ...++.++|.++.       ..|++++|+..+.+++...++.
T Consensus       105 -~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a  146 (168)
T CHL00033        105 -LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA  146 (168)
T ss_pred             -cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence             3444555555555       9999998988888888776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.21  E-value=0.00014  Score=65.80  Aligned_cols=143  Identities=13%  Similarity=0.050  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      ............+.+.+++.|++.+...|.+             .....+.+++|.+|+..++|++|+..+++.++..|+
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            3344444455567788999999999888761             123346789999999999999999999999999987


Q ss_pred             CCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHcCCCc-----------hHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQG---------------K---YREAIKYHSMVLQISEREGEYS-----------GSTEAY  292 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~g---------------d---~~eAi~~~~kaL~l~~~~~d~~-----------~~a~a~  292 (322)
                      ..+   ...+++.+|.++...+               |   ..+|+..+++.++..++....+           ..+.-.
T Consensus       102 ~~~---~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e  178 (243)
T PRK10866        102 HPN---IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  178 (243)
T ss_pred             CCc---hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            544   5778888998865543               2   2467778888776644321111           122224


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          293 GAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+|..|.+.|+|..|+.-++..++-.+
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp  206 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYP  206 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence            4588899999999999999999887654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.20  E-value=7.9e-05  Score=79.26  Aligned_cols=135  Identities=16%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh--HHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~--~~~~~a  251 (322)
                      +.+.+...+.+++.....          .++......+...+|.+++..|++++|..++++++++....+..  ......
T Consensus       506 ~~~~A~~~~~~al~~~~~----------~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  575 (903)
T PRK04841        506 ELARALAMMQQTEQMARQ----------HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL  575 (903)
T ss_pred             CHHHHHHHHHHHHHHHhh----------hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            445555566666655443          34444456677889999999999999999999999998875432  233455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +..+|.+++..|++++|...+++++.+....+ ......++..+|.++...|++++|...++++.++.
T Consensus       576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999877554 33456778889999999999999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.19  E-value=1.6e-05  Score=83.40  Aligned_cols=101  Identities=7%  Similarity=0.054  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .......+|..|...|++++|++.|+++++..|+      ...++..++..+...+++++|++.+++++..      ++.
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~  168 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAER------DPT  168 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc------Ccc
Confidence            3445566688999999999999999999998887      6677778889999999999999999998777      554


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ... +..++.++...++..+|++.|+++++..++
T Consensus       169 ~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        169 VQN-YMTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             hHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence            333 355566666678887799999999887654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=6.2e-05  Score=67.27  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..+.|++.|...+...|.                +...+-..--+...+|+.-+|++...+.++....      ...+|.
T Consensus       101 ~~~~A~e~y~~lL~ddpt----------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EAW~  158 (289)
T KOG3060|consen  101 NYKEAIEYYESLLEDDPT----------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEAWH  158 (289)
T ss_pred             chhhHHHHHHHHhccCcc----------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHH
Confidence            445566666665554433                2222223334455678888999999999999988      899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g---d~e~A~~~~~kAl~i~e  320 (322)
                      .|+.+|...|+|++|.-++++.+=+      .|..+..+..+|.++.-+|   +++-|.+||.+++++.+
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLI------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999988      8888888899999988777   56789999999998875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.17  E-value=5.9e-05  Score=72.68  Aligned_cols=91  Identities=19%  Similarity=0.276  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ....++.++...++..+|+...++++...+.      ....+...+..+..+++++.|++..++++++      .|....
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~  269 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFE  269 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHH
Confidence            4556899999999999999999999987766      5777888899999999999999999999999      888999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      +|+.|+.+|..+||+++|+...+
T Consensus       270 ~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  270 TWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHh
Confidence            99999999999999999997665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.17  E-value=4.4e-05  Score=78.14  Aligned_cols=135  Identities=18%  Similarity=0.170  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  237 (322)
Q Consensus       158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~  237 (322)
                      ++..+..+.......++.+.+...+.+.+..+|.                ...+++.+|.+|-.+|+..+|...+..|--
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----------------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH  201 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----------------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH  201 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----------------chhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            4556666666777777899999999999998887                677889999999999999999999988888


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      +.|.      ...-|..++....++|.+.+|+-+|.+||+.      .|.....++..+..|.+.|++..|.+.|.+.+.
T Consensus       202 L~p~------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~  269 (895)
T KOG2076|consen  202 LNPK------DYELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ  269 (895)
T ss_pred             cCCC------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence            7776      4567888888899999999999999999999      888888899999999999999999999999887


Q ss_pred             hhh
Q 020735          318 RLE  320 (322)
Q Consensus       318 i~e  320 (322)
                      ..+
T Consensus       270 ~~p  272 (895)
T KOG2076|consen  270 LDP  272 (895)
T ss_pred             hCC
Confidence            654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.17  E-value=6.9e-05  Score=77.34  Aligned_cols=98  Identities=19%  Similarity=0.264  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +.+.+++|..|..+|+|++|..+|.+++..+++.     ....++++|..|...|+++.|+.+|+++++.      .|+.
T Consensus       307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~------~p~~  375 (1018)
T KOG2002|consen  307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ------LPNN  375 (1018)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----ccccccchhHHHHHhchHHHHHHHHHHHHHh------Ccch
Confidence            3344455555555555555555555554444431     1334445555555555555555555555444      4444


Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELG----DLERAARFYDKYIS  317 (322)
Q Consensus       289 a~a~~~Lg~~y~~~g----d~e~A~~~~~kAl~  317 (322)
                      .+.+..||.+|...+    ..++|..+..++++
T Consensus       376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~  408 (1018)
T KOG2002|consen  376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLE  408 (1018)
T ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence            444555555554443    33444444444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.00012  Score=67.54  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ++-.+-.+|....++.+|++.-++..++.++ ......+..|+.|+..+....+.+.|+..+.+|++.      ++..+.
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvR  215 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVR  215 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------Ccccee
Confidence            4445566666677777777766666665554 333445566667777777677777777777777666      666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +-..+|.++...|+|++|.+.++.+++.
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ  243 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQ  243 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence            6666777777777777777776666543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.16  E-value=2.5e-05  Score=71.47  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+++.++..|+..+..+|..             .....+++++|.+|+..|++++|+..|+++++.+|+   ......++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s-------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---s~~~~dAl  220 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDS-------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---SPKAADAM  220 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCC-------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhHHH
Confidence            46778888999999988761             012457899999999999999999999999997774   55578899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      +.+|.++..+|++++|+..|+++++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999887

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.15  E-value=2.1e-05  Score=80.43  Aligned_cols=102  Identities=22%  Similarity=0.311  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++..|+..+..|++++|.+.+.+++..++.      ...+|+.||.+|..+||.++|...+..|-.+      +|.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~  205 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPK  205 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCC
Confidence            4667888999999999999999999999999999      8999999999999999999999999998888      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...-|..++....++|.+++|.-+|.+||+..++
T Consensus       206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~  239 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPS  239 (895)
T ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence            7789999999999999999999999999987654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.15  E-value=6.8e-05  Score=65.86  Aligned_cols=144  Identities=17%  Similarity=0.139  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+...........+...++..|++.+...|.+           +  ....+.+.+|.+++..|++++|+..+++.++..|
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-----------~--~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP   73 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-----------P--YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP   73 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-----------T--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----------h--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            45555666666778899999999999887761           1  1344788999999999999999999999999998


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQISEREGEYS-----------GSTEAYGAIADC  298 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~g-----------d~~eAi~~~~kaL~l~~~~~d~~-----------~~a~a~~~Lg~~  298 (322)
                      ...   ....+++.+|.+++.+.           ...+|+..|++.++..+......           ..+.--+.+|..
T Consensus        74 ~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~  150 (203)
T PF13525_consen   74 NSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF  150 (203)
T ss_dssp             T-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            743   35678888888876543           34578888888776644322111           122234558999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhh
Q 020735          299 YTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       299 y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      |...|.|..|+..++.+++.++
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~yp  172 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIENYP  172 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHST
T ss_pred             HHHcccHHHHHHHHHHHHHHCC
Confidence            9999999999999999998665

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.15  E-value=6.1e-06  Score=58.81  Aligned_cols=66  Identities=23%  Similarity=0.280  Sum_probs=47.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735          220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  297 (322)
Q Consensus       220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~  297 (322)
                      +..|++++|+..|+++++..|.      ...+++.++.+|...|++++|.+.+++++..      .+..+..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHhc
Confidence            4567888888888888888777      7777778888888888888888888887766      5555555544443

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.14  E-value=1.3e-05  Score=58.01  Aligned_cols=57  Identities=25%  Similarity=0.382  Sum_probs=54.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       216 a~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ..+|...+++++|++.+++++.+.|.      ....+...|.++...|++.+|++.++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999998      8889999999999999999999999999988

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.14  E-value=3.9e-05  Score=77.45  Aligned_cols=102  Identities=25%  Similarity=0.231  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHcCCC
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEY  285 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~--~~~kaL~l~~~~~d~  285 (322)
                      .+..++..|..+...|++.+|.+.|..|+.+.|+      ...+...+|.++.+.|+..-|..  .+..++++      +
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------d  750 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRL------D  750 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------C
Confidence            5667888999999999999999999999999999      88899999999999999888888  99999999      9


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |.+.++|+++|.++..+||.++|.++|+.|+++-+.
T Consensus       751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999999987653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.13  E-value=0.00023  Score=68.95  Aligned_cols=94  Identities=14%  Similarity=0.086  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a-~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ++..+.....+|+++.|.++++++.+..++      ...+ ....+.++...|++++|...+++.++.      .|....
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~  188 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADN------DQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPE  188 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHH
Confidence            444566669999999999999999887665      2222 223488999999999999999999888      788889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ++..++.+|...|||++|.+.+.+..+
T Consensus       189 al~ll~~~~~~~gdw~~a~~~l~~l~k  215 (398)
T PRK10747        189 VLRLAEQAYIRTGAWSSLLDILPSMAK  215 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999988777664

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.13  E-value=2.5e-05  Score=56.70  Aligned_cols=85  Identities=24%  Similarity=0.353  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      ..+.+.++..+++++...+.                ....++.+|.++...+++++|+..+++++...+.      ...+
T Consensus        13 ~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~   70 (100)
T cd00189          13 LGDYDEALEYYEKALELDPD----------------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAKA   70 (100)
T ss_pred             HhcHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chhH
Confidence            34566677778888776655                2357788999999999999999999999998776      4478


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      +..+|.++...|++++|..+++++++.
T Consensus        71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          71 YYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            899999999999999999999998765

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.00023  Score=63.07  Aligned_cols=150  Identities=13%  Similarity=0.143  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          157 GELQRVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA  235 (322)
Q Consensus       157 ~e~~~l~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kA  235 (322)
                      .+...+..+...+++.. ....+=..|-++-+....          .++.. ++...+..+...++..+..+|+..++++
T Consensus        31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k----------~~skh-Daat~YveA~~cykk~~~~eAv~cL~~a   99 (288)
T KOG1586|consen   31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLK----------AGSKH-DAATTYVEAANCYKKVDPEEAVNCLEKA   99 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------cCCch-hHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence            34445555555555554 333344456666655543          33333 4445555555566667999999999999


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          236 LELAQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       236 l~l~~~~~d~~~~~~a~~~LG~~~~~~-gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      ++++-++|.-..-+.-+..+|.+|-.- .++++||.+|+++-+..+..........++...+..-..+++|.+|+..|++
T Consensus       100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeq  179 (288)
T KOG1586|consen  100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQ  179 (288)
T ss_pred             HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888777777788999999865 9999999999999999887665566667888899999999999999999998


Q ss_pred             HHH
Q 020735          315 YIS  317 (322)
Q Consensus       315 Al~  317 (322)
                      ...
T Consensus       180 va~  182 (288)
T KOG1586|consen  180 VAR  182 (288)
T ss_pred             HHH
Confidence            754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.12  E-value=0.00016  Score=67.66  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...+++.++..+..+|+.-.|.++-+++.+++-..+|....+....-+|.+|...||.+.|..-|++|..+....+|..+
T Consensus       205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg  284 (518)
T KOG1941|consen  205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG  284 (518)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLER-----AARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~-----A~~~~~kAl~i~e  320 (322)
                      ...++...|.+.....-..+     |+++.++.+++++
T Consensus       285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~  322 (518)
T KOG1941|consen  285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS  322 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence            99999999999988776666     9999999998875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=0.00018  Score=62.30  Aligned_cols=131  Identities=16%  Similarity=0.191  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735          153 RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF  232 (322)
Q Consensus       153 ~~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~  232 (322)
                      ..+..+...+...+...+..+.++.+...|..++...|..           ........+.+.|.++.+++..+.|++..
T Consensus        89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----------~~e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-----------STEERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----------cHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            3345566678888888899999999999999999998862           33556778889999999999999999999


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH
Q 020735          233 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  306 (322)
Q Consensus       233 ~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e  306 (322)
                      .+++++.+.      ...++...+..|-+...|++|++.|++.++.      +|..-.+--.+..+--..++..
T Consensus       158 sKaiel~pt------y~kAl~RRAeayek~ek~eealeDyKki~E~------dPs~~ear~~i~rl~~~i~ern  219 (271)
T KOG4234|consen  158 SKAIELNPT------YEKALERRAEAYEKMEKYEEALEDYKKILES------DPSRREAREAIARLPPKINERN  219 (271)
T ss_pred             HhhHhcCch------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CcchHHHHHHHHhcCHHHHHHH
Confidence            999999998      8888999999999999999999999999998      7766666666655544444433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.09  E-value=0.00013  Score=62.60  Aligned_cols=97  Identities=13%  Similarity=0.142  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+.+|+.....|++.+|...|++++. +.-.      ....+.+++...+..+++.+|...+++..+...    ....++
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~------d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p----a~r~pd  161 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAH------DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP----AFRSPD  161 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCC------CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC----ccCCCC
Confidence            44566666666666666666666554 1111      334455666666666666666666666555421    111334


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ....+|.+|..+|++++|...|+.+++.
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence            4555666666666666666666666554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.07  E-value=2.6e-05  Score=72.43  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      .++.-.+.+|..++..|++..|+..|..|++..|+      .-.+++..|.+|...|+...|+..+.++|++      .|
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------Kp  103 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KP  103 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhc------Cc
Confidence            36777889999999999999999999999999998      8889999999999999999999999999999      99


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +...+....|.++.++|++++|...|++.|+--
T Consensus       104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~  136 (504)
T KOG0624|consen  104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHE  136 (504)
T ss_pred             cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999988643

>TIGR00540 hemY_coli hemY protein

Probab=98.06  E-value=7e-05  Score=72.79  Aligned_cols=90  Identities=19%  Similarity=0.223  Sum_probs=72.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHcCCCchHHHHH
Q 020735          217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK--KAARGLGASLQRQGKYREAIKYHSM--VLQISEREGEYSGSTEAY  292 (322)
Q Consensus       217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~--~a~~~LG~~~~~~gd~~eAi~~~~k--aL~l~~~~~d~~~~a~a~  292 (322)
                      ......++.+++++.++++++..|+      .+  ..+..+|.++++.|+|++|.++|++  +++.      .|+... +
T Consensus       307 ~~~l~~~~~~~~~~~~e~~lk~~p~------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~------~p~~~~-~  373 (409)
T TIGR00540       307 IPRLKPEDNEKLEKLIEKQAKNVDD------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE------QLDAND-L  373 (409)
T ss_pred             hhhcCCCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc------CCCHHH-H
Confidence            3334457778888888888887776      55  6788999999999999999999995  5555      555444 5


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          293 GAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..+|.++..+|+.++|.++|++++...
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            589999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=98.05  E-value=6.3e-05  Score=72.80  Aligned_cols=101  Identities=11%  Similarity=-0.038  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRN---------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       208 ~a~~~~~la~~y~~~---------g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .+.++-.+|.+++..         .+-.+|.+..++|+++.+.      .+.++..+|.+....++++.|+..|++|+.+
T Consensus       294 ~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L  367 (458)
T PRK11906        294 KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIH  367 (458)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence            455555666666543         3456778888999999998      9999999999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                            +|+.+.+++..|++....|+.++|.+..++++++.+
T Consensus       368 ------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        368 ------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence                  999999999999999999999999999999998654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=6.1e-05  Score=73.35  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      +...+...++..++..|.+++...|.                ++..+-+.|.+|...+++..|+.-.++++++.|.    
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~P~----------------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~----  424 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRDPE----------------DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN----  424 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCc----------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch----
Confidence            44444445667888888888887777                7888999999999999999999999999999888    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                        ...+|..-|.++..+.+|++|++.|+++++.      +|....+...+..|+..+...+...+.+++
T Consensus       425 --~~kgy~RKg~al~~mk~ydkAleay~eale~------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  425 --FIKAYLRKGAALRAMKEYDKALEAYQEALEL------DPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence              8889999999999999999999999999999      888888888888888865444444444444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.01  E-value=9.8e-06  Score=57.72  Aligned_cols=56  Identities=27%  Similarity=0.444  Sum_probs=50.1

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          260 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       260 ~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...|+|++|++.|+++++.      .|....+++.+|.+|...|++++|...+++++...++
T Consensus         2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            5789999999999999999      8888999999999999999999999999998876543

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.01  E-value=2e-05  Score=76.06  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK---KAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~---~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ..+.+++++|..|+..|+|++|+..|++++++.|+      ..   .+++|+|.+|..+|++++|++++++++++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            36788999999999999999999999999999987      44   45999999999999999999999999987

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.00  E-value=0.00015  Score=70.33  Aligned_cols=87  Identities=17%  Similarity=0.173  Sum_probs=75.8

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735          221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  300 (322)
Q Consensus       221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~  300 (322)
                      ..++++++++..++.++..|+      .+..+..+|.++...+++++|.++|+++++.      .|... .+..++.++.
T Consensus       306 ~~~~~~~al~~~e~~lk~~P~------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------~P~~~-~~~~La~~~~  372 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQHGD------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------RPDAY-DYAWLADALD  372 (398)
T ss_pred             cCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHH-HHHHHHHHHH
Confidence            448888888888888887777      7778899999999999999999999999988      66543 4668999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhh
Q 020735          301 ELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       301 ~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..|+.++|..+|++++....
T Consensus       373 ~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        373 RLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HcCCHHHHHHHHHHHHhhhc
Confidence            99999999999999998653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.99  E-value=1.4e-05  Score=74.21  Aligned_cols=96  Identities=11%  Similarity=0.151  Sum_probs=88.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  292 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~  292 (322)
                      -..|+.|+.+|.|++|+++|.+++..++-      .+..+.|.+.+|+++..+..|...++.|+.+      +.....+|
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAY  168 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAY  168 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHH
Confidence            45799999999999999999999999986      6777889999999999999999999999999      77788999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          293 GAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...|.+-..+|..++|.+.++.+|++-+
T Consensus       169 SRR~~AR~~Lg~~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  169 SRRMQARESLGNNMEAKKDCETVLALEP  196 (536)
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence            9999999999999999999999997643

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00016  Score=64.04  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +..+...|+.|....+++.|-..|.++-++..+.+++...+..|...+.+|.+ .++++|+.+++++++|..+.+.-..-
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a  112 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA  112 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence            44556678889999999999999999999999988888778788877777765 59999999999999999988876666


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhh
Q 020735          289 TEAYGAIADCYTEL-GDLERAARFYDKYISRLE  320 (322)
Q Consensus       289 a~a~~~Lg~~y~~~-gd~e~A~~~~~kAl~i~e  320 (322)
                      +.-+..||.+|..- .++++|+.+|+++-+.+.
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence            67788899999876 999999999999987664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.95  E-value=0.00041  Score=57.36  Aligned_cols=100  Identities=17%  Similarity=0.057  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +...+.........++.+.+...+++.++   +.++..+...+...+|.+++..|++++|+..|++++...   .++...
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~   84 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHH
Confidence            33444445555578899988887777666   445566778889999999999999999999999998753   334456


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      ..+.+.||.++...|++++|+..++.
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            77899999999999999999999866

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.93  E-value=0.0001  Score=77.39  Aligned_cols=129  Identities=5%  Similarity=-0.045  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  242 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~  242 (322)
                      .++.......++.+.+++.+++++...|.                .......+..++...|++++|+.++++++.-.+. 
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~----------------~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~-  100 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGPL----------------QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI-  100 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCcc----------------chhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC-
Confidence            34444445556777899999999998877                2212226777788889999999999999932122 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                           ....+..+|.++...|+|++|++.|+++++.      +|..+.++..++.+|...++.++|++.+++++...
T Consensus       101 -----~~~~llalA~ly~~~gdyd~Aiely~kaL~~------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574        101 -----SSRGLASAARAYRNEKRWDQALALWQSSLKK------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence                 3455666788999999999999999999999      77778888899999999999999999999987654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.93  E-value=0.00043  Score=56.10  Aligned_cols=95  Identities=19%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      .......++.+.+++.|.+++...|.                .+.++++.+..+.-+|+.++|++-++++++++-..  .
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--t  111 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--T  111 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--c
Confidence            34445555888999999999999988                78899999999999999999999999999987653  3


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .....++...|.+|..+|+.+.|...|+.+-++
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            335677889999999999999999999998776

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.00013  Score=73.34  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+.+...+|...+.+++|+++.++++..+++.+-      ....|+++|.+..+.++++.|.++|..++.+      .|+
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd  551 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPD  551 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCC
Confidence            3445566677777788888888888888888887      7778888888888889999999999888888      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ...+++|++-.|...++..+|...+++|++
T Consensus       552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             chhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            888888998888888888888888888875

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.0028  Score=54.78  Aligned_cols=101  Identities=26%  Similarity=0.196  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ..+.+.+|..+...+++++|+..++.++..   ..|......+-.+|+.+...+|.+++|+..+...-       ++...
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w~  158 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESWA  158 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccHH
Confidence            346678999999999999999999998873   44566777788899999999999999998887632       23334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +......|+++...||-++|+..|+++++..
T Consensus       159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         159 AIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            4556678999999999999999999999864

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0014  Score=58.44  Aligned_cols=114  Identities=16%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..+...+..|....+|++|-..+.+|.+-++.....+..+.++-..+........+.|+..+|+++..+..+.+....
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            34455567778888899999999999999999888888888899999999999999999999999999999998887766


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .+.++..-|.+.. .-++++|+..|++++.+++++
T Consensus       110 AAmaleKAak~le-nv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  110 AAMALEKAAKALE-NVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhcc
Confidence            7777776666554 558999999999999988754

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.86  E-value=0.0016  Score=51.80  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      +..+.-|.-.+..|-|++|...+.+|++..+.+....      ..+.++..|+..+..+|+|++++..-+++|....+.+
T Consensus        10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG   89 (144)
T PF12968_consen   10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG   89 (144)
T ss_dssp             HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence            3444556677788999999999999999998775432      3566788999999999999999999999999888865


Q ss_pred             CCc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          284 EYS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       284 d~~-----~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +-.     ....+.++.|..+..+|+.++|++.|+.+-+++.+
T Consensus        90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            422     24456788999999999999999999999887653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.86  E-value=0.00083  Score=62.64  Aligned_cols=102  Identities=18%  Similarity=0.199  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  234 (322)
Q Consensus       155 r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~k  234 (322)
                      ...++++..+.+.+.....+...++..|-.+++..|.                ...+.+..|.+|...|+-.-|+.-+.+
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~----------------~Y~aifrRaT~yLAmGksk~al~Dl~r   97 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN----------------NYQAIFRRATVYLAMGKSKAALQDLSR   97 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----------------hHHHHHHHHHHHhhhcCCccchhhHHH
Confidence            3456666667677777777888888888888877776                566777777777777777777777777


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          235 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       235 Al~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ++++-|+      ...+....|.++.++|++++|+..|+++|+-
T Consensus        98 VlelKpD------F~~ARiQRg~vllK~Gele~A~~DF~~vl~~  135 (504)
T KOG0624|consen   98 VLELKPD------FMAARIQRGVVLLKQGELEQAEADFDQVLQH  135 (504)
T ss_pred             HHhcCcc------HHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence            7777776      6666777777777778888887777777654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.83  E-value=0.00016  Score=69.91  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...+++..|..++..|++++|+..+...+...|+      ....+-..+.++...|+..+|++.+++++.+      +|.
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~  372 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALAL------DPN  372 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCC
Confidence            4557888999999999999999999998887776      6777788999999999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ......++|.+|.+.|++.+|+...+.++.-.+
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            888999999999999999999999998876544

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00019  Score=66.41  Aligned_cols=109  Identities=18%  Similarity=0.274  Sum_probs=97.5

Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      .....+.-+-.-|+-|+...+|..|.+.|.+++.  .++.|+...+..|.|.+.+....|+|..|+.-..+++.+     
T Consensus        76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-----  148 (390)
T KOG0551|consen   76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-----  148 (390)
T ss_pred             ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3444555666689999999999999999999887  678899999999999999999999999999999999999     


Q ss_pred             CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       284 d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                       +|....+++.=|.|+.++..+.+|..+.+..+.+..
T Consensus       149 -~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  149 -KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             -CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence             999999999999999999999999999988877653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.82  E-value=0.00036  Score=53.57  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=70.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735          218 NFLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  294 (322)
Q Consensus       218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~---~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~  294 (322)
                      ...+.+||.+|++.+.+..+......+..   ....++.+++.++...|++++|+..++++++++++.+|......++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~   86 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW   86 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            34578999999999999999988766554   567789999999999999999999999999999999998887777776


Q ss_pred             HHHHH
Q 020735          295 IADCY  299 (322)
Q Consensus       295 Lg~~y  299 (322)
                      +..+.
T Consensus        87 ~~~l~   91 (94)
T PF12862_consen   87 LANLL   91 (94)
T ss_pred             HHHHh
Confidence            66554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.74  E-value=0.00023  Score=71.64  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +++++...++.++...+-                ....++..|.+....++++.|.++|..++.+.|.      ...+++
T Consensus       500 ~fs~~~~hle~sl~~npl----------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWn  557 (777)
T KOG1128|consen  500 DFSEADKHLERSLEINPL----------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWN  557 (777)
T ss_pred             hHHHHHHHHHHHhhcCcc----------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhh
Confidence            345555555666655554                6678999999999999999999999999999999      899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      |++.+|.+.++-.+|...+.+|++.      +......+.|--.+....|.+++|++.|.+-+.+-
T Consensus       558 Nls~ayi~~~~k~ra~~~l~EAlKc------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  558 NLSTAYIRLKKKKRAFRKLKEALKC------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             hhhHHHHHHhhhHHHHHHHHHHhhc------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999988      44455667777788889999999999999987754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.69  E-value=0.00094  Score=58.70  Aligned_cols=132  Identities=19%  Similarity=0.207  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      -+.+++.-+...+-..-+-..+.+++.+.|+                .+.+.+.+|.-+...|+||.|.+.|...+++.|
T Consensus        67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp  130 (297)
T COG4785          67 LLFERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  130 (297)
T ss_pred             HHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence            3444444444444555566678888888877                677788888888888999999998888888777


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------------------
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHS-----------------------------------------------  273 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~-----------------------------------------------  273 (322)
                      .      ...+..|.|..++--|+|.=|.+.+.                                               
T Consensus       131 ~------y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~  204 (297)
T COG4785         131 T------YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWN  204 (297)
T ss_pred             c------chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHH
Confidence            6      44444444444444444333322221                                               


Q ss_pred             ----------------HHHHHHHHcCCCc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          274 ----------------MVLQISEREGEYS----GSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       274 ----------------kaL~l~~~~~d~~----~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                                      ++.+-++   ++.    ...++|+.||.-|...|+.++|...|+-++.
T Consensus       205 iV~~yLgkiS~e~l~~~~~a~a~---~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         205 IVEFYLGKISEETLMERLKADAT---DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHHHHHhhccHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                            1111111   111    2456788899999999999999999998875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.67  E-value=0.0003  Score=60.04  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735          225 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK----------YREAIKYHSMVLQISEREGEYSGSTEAYGA  294 (322)
Q Consensus       225 ~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd----------~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~  294 (322)
                      |+.|.+.++......|.      .++++++.|.++..+.+          +++|+.-|++||.+      +|...+++++
T Consensus         7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~   74 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWC   74 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHH
Confidence            46677777777777777      78888888888776633          56788888888888      8999999999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHHHHHhh
Q 020735          295 IADCYTELGD----LERAARFYDKYISRL  319 (322)
Q Consensus       295 Lg~~y~~~gd----~e~A~~~~~kAl~i~  319 (322)
                      +|.+|..++.    ..+|.++|++|.+.+
T Consensus        75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~F  103 (186)
T PF06552_consen   75 LGNAYTSLAFLTPDTAEAEEYFEKATEYF  103 (186)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            9999998764    335555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.61  E-value=0.00085  Score=70.53  Aligned_cols=107  Identities=13%  Similarity=0.211  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .-.+++.+|.+|-..|++++|...|++++++.+.      .+.+++++|..|... +.++|++++.+|++..-.......
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~  187 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG  187 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence            4458899999999999999999999999999988      999999999999999 999999999999876543221111


Q ss_pred             HH----------------------HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 ST----------------------EAYGAIA------------DCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a----------------------~a~~~Lg------------~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .-                      .....++            .+|.+.++|++++++++.++++-++
T Consensus       188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence            10                      1122234            8899999999999999999987543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.60  E-value=0.00041  Score=55.82  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.++++.++-..|+.++|+.+|+++++..   -+.+....++..+|.++..+|++++|...+++++.-++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            467899999999999999999999998751   123345679999999999999999999999999876554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00015  Score=64.37  Aligned_cols=98  Identities=9%  Similarity=0.056  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      -+-.-|+.|+....|+.|+..|.+++.+.|.      .+..+.|-+.+|.+..+++.+....++++++      .++.+.
T Consensus        12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk   79 (284)
T KOG4642|consen   12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVK   79 (284)
T ss_pred             HHHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHH
Confidence            3444688899999999999999999999997      6677889999999999999999999999999      899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +++.+|.+......|++|+..+++|.++..
T Consensus        80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r  109 (284)
T KOG4642|consen   80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLR  109 (284)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            999999999999999999999999987764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.0008  Score=60.94  Aligned_cols=101  Identities=16%  Similarity=0.110  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +.+..-......++..+...|..-+..+|.+..             ...+++|+|.+++.+|+|+.|...|..+.+-+| 
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-  209 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-  209 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-------------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-
Confidence            444444455555778888888888888877311             345899999999999999999999999888554 


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                        +....+++++.||.+..++|+.++|-..|+++++.
T Consensus       210 --~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         210 --KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             --CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence              45557789999999999999999999999999888

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.55  E-value=0.0023  Score=64.01  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      .+.....++++.+|..|...|++++|+++.++|++..|.      ....|...|.++-..|++.+|.++++.|..+    
T Consensus       188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L----  257 (517)
T PF12569_consen  188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEAREL----  257 (517)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----
Confidence            344456789999999999999999999999999999998      8889999999999999999999999999888    


Q ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          283 GEYSGSTEAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                        +...-..-...+..+...|+.++|.+...
T Consensus       258 --D~~DRyiNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  258 --DLADRYINSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             --ChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence              55544555566888889999999987654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0012  Score=62.84  Aligned_cols=106  Identities=18%  Similarity=0.138  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          157 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  236 (322)
Q Consensus       157 ~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl  236 (322)
                      ..++...+++.+.+..+....+.+.|..+|...|.            +....+..+.+.|.+..+.|+..+|+.--+.++
T Consensus       247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            34455666677778888888999999999998876            444467789999999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          237 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       237 ~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      ++.+.      ...++...|.++..+++|++|++.|+++++...
T Consensus       315 ~iD~s------yikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  315 KIDSS------YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             hcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99998      899999999999999999999999999998744

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.53  E-value=0.00016  Score=44.14  Aligned_cols=30  Identities=30%  Similarity=0.564  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|+++|.+|..+|++++|+++|++++++.+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            444555555555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.49  E-value=0.00028  Score=42.87  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+++.+|.+|..+|++++|+++|++++++.++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0041  Score=59.39  Aligned_cols=101  Identities=18%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...+++..|......++.++|+-.|+.|..++|-      .-.+|.+|-.+|...|++.||....+.+++.      -+.
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~------~~~  400 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYLAQKRFKEANALANWTIRL------FQN  400 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH------hhc
Confidence            5667777888888888888888888888888876      7778888888888888888888888888777      455


Q ss_pred             HHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIA-DCY-TELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg-~~y-~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+.++..+| .++ ..----++|.+++++++.+-+
T Consensus       401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P  435 (564)
T KOG1174|consen  401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP  435 (564)
T ss_pred             chhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence            566666665 333 222334788888888877643

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0019  Score=61.53  Aligned_cols=108  Identities=17%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------------------------CCChHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN------------------------------VKDPIEEKKAARGLGA  257 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~------------------------------~~d~~~~~~a~~~LG~  257 (322)
                      ...++-.+-.+|...+++.+|...-+.++...+.                              +.-.+....+...++.
T Consensus       367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE  446 (564)
T KOG1174|consen  367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE  446 (564)
T ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence            3445666778899999999998866555554332                              1112223345667788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          258 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .....|.+++++..+++.+..      .++ ...+..||.++...+.+.+|..+|..|+++-+++
T Consensus       447 L~~~Eg~~~D~i~LLe~~L~~------~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  447 LCQVEGPTKDIIKLLEKHLII------FPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             HHHhhCccchHHHHHHHHHhh------ccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            888889999999999998876      332 3568889999999999999999999999887653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.46  E-value=0.0053  Score=50.49  Aligned_cols=105  Identities=25%  Similarity=0.349  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCC-hHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----VKD-PIE----------EKKAARGLGASLQRQGKYREAIKYHSM  274 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~-----~~d-~~~----------~~~a~~~LG~~~~~~gd~~eAi~~~~k  274 (322)
                      .....|......++.+.++..+++++.++..     ..+ .+.          ...++..++..+...|++++|+..+++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3344466666778888899999998888742     111 121          234566788889999999999999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       275 aL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++.+      +|....++..+-.+|...|++.+|...|++..+.+.+
T Consensus        88 ~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~  128 (146)
T PF03704_consen   88 ALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE  128 (146)
T ss_dssp             HHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            9999      9999999999999999999999999999999877653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.44  E-value=0.01  Score=51.06  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      -.++..+|..|.+.|++++|++.|.++.+..   .........+.++-.+....+++.....+..++-.+.+..+|....
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            3477889999999999999999999977753   3344456667788888889999999999999999988876664445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ......-|..+...++|.+|.+.|-.++.
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            55566678888889999999999877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.43  E-value=0.0028  Score=52.29  Aligned_cols=101  Identities=14%  Similarity=0.150  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +.++........+++.+++.++......|.+..             .-.+.+.+|.+|+..+++++|+..+++.+++.|.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            344444555555777788888887777765210             2247889999999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGK---------------YREAIKYHSMVLQI  278 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd---------------~~eAi~~~~kaL~l  278 (322)
                      ..+   ...+++..|.+++.+.+               ..+|...|++.++.
T Consensus        80 hp~---vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   80 HPN---VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             CCC---ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            544   56689999999998877               88888888888777

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.43  E-value=0.0036  Score=55.51  Aligned_cols=97  Identities=22%  Similarity=0.277  Sum_probs=75.4

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---C----CCchHHHHHH
Q 020735          222 NQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE---G----EYSGSTEAYG  293 (322)
Q Consensus       222 ~g~~~~Al~~~~kAl~l~~~~~-d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~---~----d~~~~a~a~~  293 (322)
                      ..++++|++.|.-|+-.+.-.+ +....+..+..++++|..+|+.+....++++|++..++.   .    ........++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            3567788887777777776554 344578889999999999999888888888887766662   1    1224567889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          294 AIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       294 ~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .+|.++...|++++|..+|.+.+..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999998753

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.43  E-value=0.00013  Score=45.11  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          271 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  310 (322)
Q Consensus       271 ~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~  310 (322)
                      +|+++|++      +|..+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37899999      99999999999999999999999863

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.43  E-value=0.00041  Score=43.26  Aligned_cols=31  Identities=32%  Similarity=0.566  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      ++.+||.+|...|+|++|+++|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            3566677777777777777777776655443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.40  E-value=0.0014  Score=60.77  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      +.+.|...+++......+                .....+..|++....|  ++.+|...|++..+..+.      .+..
T Consensus       146 R~dlA~k~l~~~~~~~eD----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~  203 (290)
T PF04733_consen  146 RPDLAEKELKNMQQIDED----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKL  203 (290)
T ss_dssp             -HHHHHHHHHHHHCCSCC----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHH
T ss_pred             CHHHHHHHHHHHHhcCCc----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHH
Confidence            555565555555444333                4555666666766666  589999999985543332      4677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL-ERAARFYDKYIS  317 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~-e~A~~~~~kAl~  317 (322)
                      +++++.++..+|+|++|.+.++++++.      ++..++++.|+..+...+|+. +.+.++.++..+
T Consensus       204 lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  204 LNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            899999999999999999999998765      777889999999999999998 556666665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.0099  Score=53.46  Aligned_cols=96  Identities=23%  Similarity=0.239  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +.-..|..+-..|++++|+++|+..++-.|.      ...++-.--.+...+|+..+||+....-++.      -+...+
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~E  155 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQE  155 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHH
Confidence            4445688888999999999999998886654      4444444455677889999999999998888      777889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +|..++.+|...|+|++|.-+|++.+=+
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            9999999999999999999999998743

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0036  Score=56.02  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIE------EKKAARGLGASLQRQGKYREAIKYHSMVL  276 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~------~d~~~------~~~a~~~LG~~~~~~gd~~eAi~~~~kaL  276 (322)
                      ..++...|+.++..|+|.+|...|..|+...+.+      +++..      ..-.+.|.+.++...|+|-+++++....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            3466778999999999999999999998877653      22211      11247789999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       277 ~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..      .+++..+|+..|.+....=+..+|...+.+++++-
T Consensus       258 ~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  258 RH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             hc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            98      89999999999999999999999999999998753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.38  E-value=0.00054  Score=41.76  Aligned_cols=30  Identities=30%  Similarity=0.515  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      +.+++++|.+|..+|++++|+.+|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.35  E-value=0.0047  Score=61.22  Aligned_cols=105  Identities=19%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...-++..|..+...|+.++|++.|++++......  +......++.+|.++..+.+|++|.+++.+..+.     ..+.
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WS  338 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWS  338 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccH
Confidence            45567778999999999999999999988544332  2234567899999999999999999999998775     3455


Q ss_pred             HHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTELGDL-------ERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~-------e~A~~~~~kAl~i~  319 (322)
                      .+...|..|.|+...|+.       ++|.+++.++-...
T Consensus       339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            677788889999999999       77777777765543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.33  E-value=0.0005  Score=42.86  Aligned_cols=30  Identities=23%  Similarity=0.529  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++.+||.+|..+|+|++|+++|++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            578999999999999999999999887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.32  E-value=0.00047  Score=44.98  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  297 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~  297 (322)
                      .++..+|..|...|++++|++.|+++++.      .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCCHHHHHHhhh
Confidence            46788999999999999999999999999      8888888888875

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.28  E-value=0.038  Score=49.86  Aligned_cols=142  Identities=15%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      ..+.+++......++.+.|+..|+......|.+           +-  .-.+.+.++.++++.++|+.|+...++.+.+.
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-----------~~--~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-----------PY--SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------cc--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            366666666666678888888888888766652           11  12377889999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHc-----CCHH---HHHHHHHHHHHHHHHcCCCchHHH--------------HHHHHHH
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQ-----GKYR---EAIKYHSMVLQISEREGEYSGSTE--------------AYGAIAD  297 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~-----gd~~---eAi~~~~kaL~l~~~~~d~~~~a~--------------a~~~Lg~  297 (322)
                      |...+   ...+++..|.+++..     .|..   +|+..+++.++   +.++.....+              --..+|.
T Consensus       102 P~~~n---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar  175 (254)
T COG4105         102 PTHPN---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSRYAPDAKARIVKLNDALAGHEMAIAR  175 (254)
T ss_pred             CCCCC---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            98555   555777778777643     3444   44555555444   3333332222              2334899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhh
Q 020735          298 CYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       298 ~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .|.+.|.|..|+..++..++-.+
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~  198 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYP  198 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccc
Confidence            99999999999999999887654

>PRK15331 chaperone protein SicA; Provisional

Probab=97.27  E-value=0.0016  Score=54.88  Aligned_cols=99  Identities=11%  Similarity=0.008  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  237 (322)
Q Consensus       158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~  237 (322)
                      .++.+....-..+..++.+.|...|+-...+.+.                ...-++.+|.++...++|++|++.|.-+..
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~----------------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY----------------NPDYTMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555666666777777777766665544                344578899999999999999999999998


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      +.++      .+...+..|.+|...|+.++|+.+|+.+++.
T Consensus       100 l~~~------dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        100 LLKN------DYRPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             cccC------CCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence            8876      6666899999999999999999999999874

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.02  Score=51.38  Aligned_cols=144  Identities=16%  Similarity=0.139  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          163 NEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       163 ~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      .++...+.+.+ ...++...|+++...+..          -+.. +.+...+..|--....-++++|+.+|++++.+.+.
T Consensus        74 yEqaamLake~~klsEvvdl~eKAs~lY~E----------~Gsp-dtAAmaleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen   74 YEQAAMLAKELSKLSEVVDLYEKASELYVE----------CGSP-DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hCCc-chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            33333333433 345566667777765543          1111 13344455555666778999999999999999887


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      -+........+...+.++.+..++++|-..+.+-..+..+....+....++...-.+|.-..||..|...|+..-+
T Consensus       143 ~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q  218 (308)
T KOG1585|consen  143 DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ  218 (308)
T ss_pred             cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence            5555555666778899999999999999999988888777777777777777777888888899999999987544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.24  E-value=0.0033  Score=63.02  Aligned_cols=109  Identities=16%  Similarity=0.048  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHH
Q 020735          206 KEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR----EAIKYHSMVLQI  278 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~---~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~----eAi~~~~kaL~l  278 (322)
                      ...++.++..|..|...++   +.+|..+|++|+++.|+      .+.++-.++.+|.....+.    ..+....++.+.
T Consensus       336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3467788888988887655   88999999999999999      7888888877776543322    122222222222


Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .......+..+.+|..+|..+...|++++|..++++|+++.+
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p  451 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM  451 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence            222222444568899999999999999999999999998753

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.24  E-value=0.0035  Score=55.61  Aligned_cols=96  Identities=22%  Similarity=0.220  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CChH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPI  246 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-------~d~~  246 (322)
                      ..+.+++.|.-|+-.+..         ...+....+..++.+|..|...++.+....++++|++.+.+.       ....
T Consensus        92 t~~~ai~~YkLAll~~~~---------~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~  162 (214)
T PF09986_consen   92 TLEEAIESYKLALLCAQI---------KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM  162 (214)
T ss_pred             CHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence            456788888888876654         123444678899999999999999776666666666655431       2233


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .....++.+|...++.|++++|+.+|.+++..
T Consensus       163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            45678899999999999999999999998865

>PRK11906 transcriptional regulator; Provisional

Probab=97.23  E-value=0.0047  Score=60.07  Aligned_cols=110  Identities=15%  Similarity=-0.033  Sum_probs=85.7

Q ss_pred             HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 020735          176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  255 (322)
Q Consensus       176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~L  255 (322)
                      .++.+.-+++++..+.                ++.++..+|.+....++++.|...|++|+.+.|+      .+.+++..
T Consensus       321 ~~a~~~A~rAveld~~----------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~  378 (458)
T PRK11906        321 QKALELLDYVSDITTV----------------DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYR  378 (458)
T ss_pred             HHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHH
Confidence            3444455556665555                7788999999999999999999999999999999      99999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH-HHHHHH-HHHHcCCHHHHHHHHHH
Q 020735          256 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA-YGAIAD-CYTELGDLERAARFYDK  314 (322)
Q Consensus       256 G~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a-~~~Lg~-~y~~~gd~e~A~~~~~k  314 (322)
                      |.+..-.|+.++|++..++++++      +|....+ ...+-. .|. -.-.++|+..|-+
T Consensus       379 ~~~~~~~G~~~~a~~~i~~alrL------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  432 (458)
T PRK11906        379 ALVHFHNEKIEEARICIDKSLQL------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhcc------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence            99999999999999999999999      5543332 333333 444 3456777776644

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.18  E-value=0.028  Score=46.53  Aligned_cols=94  Identities=29%  Similarity=0.388  Sum_probs=73.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHH
Q 020735          218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA  296 (322)
Q Consensus       218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~Lg  296 (322)
                      ++...+++++|...+.+++...+.   .......+...+..+...+++++|+..+.+++..      .+. ....+..++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~  209 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKL------NPDDDAEALLNLG  209 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh------CcccchHHHHHhh
Confidence            888999999999999998663321   1124555666677788889999999999999888      444 567788899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          297 DCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       297 ~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+...+++++|...+.+++...+
T Consensus       210 ~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         210 LLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCc
Confidence            999999999999999998887654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.17  E-value=0.007  Score=60.59  Aligned_cols=125  Identities=16%  Similarity=0.148  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.+++..++++...|.                ....++..|.++-+.|++.+|.+.++.|.++...      .-....
T Consensus       209 ~~~~Al~~Id~aI~htPt----------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------DRyiNs  266 (517)
T PF12569_consen  209 DYEKALEYIDKAIEHTPT----------------LVELYMTKARILKHAGDLKEAAEAMDEARELDLA------DRYINS  266 (517)
T ss_pred             CHHHHHHHHHHHHhcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh------hHHHHH
Confidence            667788888888887766                6778899999999999999999999999998776      556666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+-.+.+.|+.++|.+.+..-..--.....+.   ...+.....|.+|...|++..|++.|....++++
T Consensus       267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            777788899999999988876432210000011   1233345569999999999999999999988775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.17  E-value=0.0049  Score=61.67  Aligned_cols=100  Identities=13%  Similarity=0.191  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .-.+|..+|.++....+|++|+.+|+.|+.+.++      ....++-|+....++++|+...+.-.+-+++      .+.
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~  141 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL------RPS  141 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhh
Confidence            3446788899999999999999999999999888      8888999999999999999988888888888      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .-..|...+..+...|++..|.+..+...+..
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77888999999999999999998887766543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.15  E-value=0.0047  Score=57.76  Aligned_cols=96  Identities=18%  Similarity=0.208  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+.+++..++.++.+++++..|.++++..|-                ..-.+.+.|..|+++..|..|..-...|+.+.+
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----------------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----------------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCC----------------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence            3677888999999999999999999998875                334567889999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .      +..+|...|.+-..+|...+|.+.++.+|++
T Consensus       163 ~------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  163 L------YVKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             H------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            8      8999999999999999999999999999998

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.15  E-value=0.0013  Score=39.87  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      +.+++.+|.+++..|++++|+++|++++++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            357889999999999999999999999988

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.15  E-value=0.0031  Score=63.01  Aligned_cols=122  Identities=16%  Similarity=0.076  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      +...++..-+...+..+.-.+.                -..++-..|......|+-++|.++...++..+..      ..
T Consensus        18 yE~kQYkkgLK~~~~iL~k~~e----------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S~   75 (700)
T KOG1156|consen   18 YETKQYKKGLKLIKQILKKFPE----------------HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------SH   75 (700)
T ss_pred             HHHHHHHhHHHHHHHHHHhCCc----------------cchhHHhccchhhcccchHHHHHHHHHHhccCcc------cc
Confidence            3333444455555555554444                3345667788999999999999999998886665      55


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .+|.-+|.++....+|++||++|+.|+.+      .+++...+..++....++++++-..+.-.+-++..
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            67888999999999999999999999999      88888899999999999999998887777666544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.013  Score=58.17  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------------hCCCh-HHHHHHHHHHHHHHHHcCCH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ------------------------NVKDP-IEEKKAARGLGASLQRQGKY  265 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~------------------------~~~d~-~~~~~a~~~LG~~~~~~gd~  265 (322)
                      ...-.|.++|++++|++|++.|+...+-..                        ..... ...-..+||.+-++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            444568999999999999998876633110                        00111 11234588999999999999


Q ss_pred             HHHHHHHHHHHHHHHHc---CCCc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          266 REAIKYHSMVLQISERE---GEYS------GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       266 ~eAi~~~~kaL~l~~~~---~d~~------~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|++.+++++.++.+.   +|..      ....+...++.++..+|+-++|...|...++....
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~  256 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA  256 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence            99999999999888773   1111      24456778999999999999999999998876543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.13  E-value=0.0091  Score=51.07  Aligned_cols=83  Identities=17%  Similarity=0.226  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhCC
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ----------DLEKAFTEFKAALELAQNVK  243 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g----------~~~~Al~~~~kAl~l~~~~~  243 (322)
                      -.+.+.+.+.......|.                ++..+++-|.++..+.          -+++|+.-|++|+.+.|+  
T Consensus         6 ~FE~ark~aea~y~~nP~----------------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~--   67 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPL----------------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN--   67 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--
T ss_pred             HHHHHHHHHHHHHHhCcH----------------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc--
Confidence            455566666666666655                4445555555554442          356778888999999998  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHH
Q 020735          244 DPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQI  278 (322)
Q Consensus       244 d~~~~~~a~~~LG~~~~~~gd-----------~~eAi~~~~kaL~l  278 (322)
                          ...+++++|++|..++.           |++|..+|++|.+.
T Consensus        68 ----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~  109 (186)
T PF06552_consen   68 ----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE  109 (186)
T ss_dssp             -----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence                88999999999987654           44555555555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0047  Score=55.02  Aligned_cols=102  Identities=22%  Similarity=0.204  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      ..+.+++...+..-++..++..|.+++...|.                -+.-+-+.+.+|++..+++.+..--.+++++.
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~----------------~~~Y~tnralchlk~~~~~~v~~dcrralql~   74 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPT----------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD   74 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCCC----------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence            35666666667667888999999999998887                33455678999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      ++      .+.+++.+|........|++||..+.++..+.+...
T Consensus        75 ~N------~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   75 PN------LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             hH------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            99      999999999999999999999999999988877654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.12  E-value=0.001  Score=69.13  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+...|..|...+++.+|+..|+.++...|+      ...++.+||.+|-..|+|..|++.|.++..+      +|....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y  631 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKY  631 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHH
Confidence            4555888899999999999999999999998      8999999999999999999999999999999      888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +-+..+......|+|++|...+.+.+..+.
T Consensus       632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  632 GRFKEAVMECDNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998886553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.12  E-value=0.0045  Score=64.62  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCc
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-~~d~~  286 (322)
                      +..++..+|.+|...|+|..|+..|.+|..+.|.      ...+.+..+......|+|.+|+..+...+..... ..-..
T Consensus       595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~  668 (1238)
T KOG1127|consen  595 DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQN  668 (1238)
T ss_pred             hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7788999999999999999999999999999998      7778899999999999999999999988764332 23345


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +.++++...+..+...|=+.+|..+++++++++
T Consensus       669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f  701 (1238)
T KOG1127|consen  669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESF  701 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            678889999999999999999999999999865

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.12  E-value=0.0011  Score=58.27  Aligned_cols=100  Identities=16%  Similarity=0.057  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ..+..++..|..|-..|=.+-|.--|.+++.+.|+      .+.+++.||..+...|+|+.|.+.|..++++      +|
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------Dp  130 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DP  130 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhcc------CC
Confidence            35677888899999999999999999999999999      8999999999999999999999999999999      89


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ....+..|.|....--|+|+-|.+-+.+-.+-
T Consensus       131 ~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785         131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             cchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence            88899999999999999999998877665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.09  E-value=0.0015  Score=39.65  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+|+.+|.+|..+|++++|.++|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4566677777777777777777777776654

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.06  E-value=0.00039  Score=42.88  Aligned_cols=34  Identities=38%  Similarity=0.511  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          231 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK  270 (322)
Q Consensus       231 ~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~  270 (322)
                      +|++++++.|+      .+.++++||.+|...|++++|++
T Consensus         1 ~y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPN------NAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhcC
Confidence            37899999999      99999999999999999999963

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.03  E-value=0.0048  Score=47.24  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          258 SLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...+.|||.+|++.+.+............   ....+..++|.++...|++++|...+++|++++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999988877655   56778999999999999999999999999998864

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.97  E-value=0.00051  Score=66.47  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735          214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  293 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~  293 (322)
                      .-|..++..++|+.|+..|.+|+++.+.      .+..+-+.+..+.+.+++..|+.-+.++|++      +|....+|+
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~   76 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYV   76 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhc------Cchhhheee
Confidence            3577888899999999999999999997      6666777888999999999999999999999      899999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          294 AIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       294 ~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      .-|.+...++++.+|...|++...+.++|
T Consensus        77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd  105 (476)
T KOG0376|consen   77 RRGTAVMALGEFKKALLDLEKVKKLAPND  105 (476)
T ss_pred             eccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence            99999999999999999999998776654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.035  Score=51.20  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ....+.|-+.++.|+|++|+.-|+.+++.      .-..+..-|+++.++...++++.|.++..+.++.
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqv------sGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQV------SGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhh------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            34567777777788888888888888877      3334455677888888888888888887776653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.011  Score=53.55  Aligned_cols=108  Identities=16%  Similarity=0.149  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      .+....-.+|.+.+..||.+.|..+|++.-+....+.+-........+.+.+|.-.++|.+|...|.+.+..      ++
T Consensus       210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~------D~  283 (366)
T KOG2796|consen  210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM------DP  283 (366)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc------CC
Confidence            344455678888899999999999998877777666666666667888888899999999999999998887      77


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+.+-++.|.|..-.|+..+|++..+.++++.+
T Consensus       284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            7788888999999999999999999998887654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.89  E-value=0.018  Score=51.86  Aligned_cols=107  Identities=17%  Similarity=0.141  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.-|..-+..|++++|.+.|++.....|-   .+....+...++.++++.++|++|+...++-+.+.+   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~---s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP---~~~n  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPF---SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP---THPN  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCC
Confidence            3557888999999999999999999998865543   444578899999999999999999999999988844   4666


Q ss_pred             HHHHHHHHHHHHHHcCC-----H---HHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGD-----L---ERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd-----~---e~A~~~~~kAl~i~e  320 (322)
                      ...+++..|.++...=+     .   .+|...+++.++.++
T Consensus       107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP  147 (254)
T COG4105         107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP  147 (254)
T ss_pred             hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence            78899999998765432     2   355666666665554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.85  E-value=0.0083  Score=61.11  Aligned_cols=97  Identities=18%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHH
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFT--EFKAALELA  239 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~--~~~kAl~l~  239 (322)
                      .+..+.........+++.+.|..++...|.                ...+.-.+|.++...|+..-|..  ....++++.
T Consensus       687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~----------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d  750 (799)
T KOG4162|consen  687 YYLRGLLLEVKGQLEEAKEAFLVALALDPD----------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD  750 (799)
T ss_pred             HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC----------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence            344445556666788999999999999887                45567778999999999888888  899999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      +.      ...+|++||.++..+||.++|.++|..++++.+
T Consensus       751 p~------n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  751 PL------NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CC------CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            98      899999999999999999999999999999843

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.021  Score=56.74  Aligned_cols=98  Identities=18%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI--------------  278 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l--------------  278 (322)
                      +..|++.|+++..|+|+..++..   .+.      ....+.--+.+++++|+|++|.+.|+..++-              
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~~---~~~------~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKGL---DRL------DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhcc---ccc------chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            57899999999999999998821   111      2334555678899999999999999876321              


Q ss_pred             ----------HHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          279 ----------SEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       279 ----------~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                                .+.....+ +..+.+||.|-++...|+|.+|++.+++|+++-
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~  205 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC  205 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                      11122222 256789999999999999999999999997654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.068  Score=50.08  Aligned_cols=94  Identities=15%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735          214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  293 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~  293 (322)
                      ..+......|-|++|.+.-.+++++.+.      ...+....+.++...++..++.++..+.-..=+  ........-|.
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyW  251 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYW  251 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhH
Confidence            3455566677777777777777777776      666677777777777777777766655311100  00111223455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Q 020735          294 AIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       294 ~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                      ..|.+|.+-+.|+.|.+.|++-
T Consensus       252 H~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHH
Confidence            5677777777777777777654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.75  E-value=0.0031  Score=41.04  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA  257 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~  257 (322)
                      +++.+|..|...|++++|++.|+++++..|+      ...++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~------~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD------DPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------CHHHHHHhhh
Confidence            5778999999999999999999999999998      7778877764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.74  E-value=0.034  Score=52.83  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+..+..||..+++.+.|.+|.++++.+++.      .+. +..+..+|.++..+|+.++|.+.+++++....
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~------~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKL------RPS-ASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc------CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            3467889999999999999999999999877      443 45688899999999999999999999996654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.69  E-value=0.091  Score=43.38  Aligned_cols=105  Identities=22%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~-~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ....+...+..+...+++.+++..+.+++...+..      .......+. ++...|++++|+..+.+++...+.   ..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~  164 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALELDPE---LN  164 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cc
Confidence            45567778889999999999999999988866552      223333444 899999999999999999664110   12


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .....+...+..+...+++++|...+.+++...+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            45667777788899999999999999999887654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.66  E-value=0.016  Score=58.27  Aligned_cols=86  Identities=13%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 020735          220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  299 (322)
Q Consensus       220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y  299 (322)
                      +...+++.|..+|.++....+       ....++.-....+.++..++|+..++.+++.      .|.....|..+|.++
T Consensus       629 ~en~e~eraR~llakar~~sg-------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~  695 (913)
T KOG0495|consen  629 FENDELERARDLLAKARSISG-------TERVWMKSANLERYLDNVEEALRLLEEALKS------FPDFHKLWLMLGQIE  695 (913)
T ss_pred             hccccHHHHHHHHHHHhccCC-------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh------CCchHHHHHHHhHHH
Confidence            344555555555555555444       2444555566666677777777777777777      666777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 020735          300 TELGDLERAARFYDKYISR  318 (322)
Q Consensus       300 ~~~gd~e~A~~~~~kAl~i  318 (322)
                      ..+++.+.|.+.|...+..
T Consensus       696 e~~~~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  696 EQMENIEMAREAYLQGTKK  714 (913)
T ss_pred             HHHHHHHHHHHHHHhcccc
Confidence            7777777777777766543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.026  Score=53.09  Aligned_cols=125  Identities=15%  Similarity=0.102  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHHHHhCC
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA----------LELAQNVK  243 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kA----------l~l~~~~~  243 (322)
                      +++++++.|.........                .+....++|.+++-.|.|.+|.....++          ..++-+++
T Consensus        72 dY~~Al~~Y~~~~~~~~~----------------~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   72 DYEEALNVYTFLMNKDDA----------------PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             cHHHHHHHHHHHhccCCC----------------CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            666677766666553222                3456778899999999999997754332          11233333


Q ss_pred             ChHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          244 DPIEEK----------KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       244 d~~~~~----------~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      |.....          .-...|+.+.+..-.|++||+.|++++.-      .+.....-.++|.||.++.-|+-+.+...
T Consensus       136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d------n~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD------NPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            333222          12345667777788899999999998866      66655667789999999999999988888


Q ss_pred             HHHHhhh
Q 020735          314 KYISRLE  320 (322)
Q Consensus       314 kAl~i~e  320 (322)
                      -+++.++
T Consensus       210 vYL~q~p  216 (557)
T KOG3785|consen  210 VYLRQFP  216 (557)
T ss_pred             HHHHhCC
Confidence            8877654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.52  E-value=0.0065  Score=38.29  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++.+||.+|..+|++++|..++++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            44555555555555555555555555443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.46  E-value=0.03  Score=54.13  Aligned_cols=91  Identities=18%  Similarity=0.045  Sum_probs=76.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 020735          216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  295 (322)
Q Consensus       216 a~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~L  295 (322)
                      -..+...++++.|++.+++..+..++         ....++.++...++..+|+..+.++++.      .|..+..+...
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---------v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Q  240 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---------VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQ  240 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---------HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence            34455678999999999997765543         4456899999999999999999999966      66668888899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          296 ADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       296 g~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +..+...++++.|++..++++++.+.
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~  266 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPS  266 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            99999999999999999999988764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.44  E-value=0.00091  Score=62.26  Aligned_cols=94  Identities=18%  Similarity=0.145  Sum_probs=84.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  292 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~  292 (322)
                      ...+.-.+..|++++|++.|..++++.+.      .+..+...+.++.++++...||..+..++++      +++.+..|
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~y  185 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGY  185 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhcc------Cccccccc
Confidence            34566677889999999999999999988      7888889999999999999999999999999      88888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          293 GAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      -..|.....+|+|++|..++..+.++
T Consensus       186 kfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             chhhHHHHHhhchHHHHHHHHHHHhc
Confidence            88999999999999999999988764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.43  E-value=0.0053  Score=36.67  Aligned_cols=30  Identities=33%  Similarity=0.709  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +++.+|.+|...|++++|...|++.++.++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            455566666666666666666666555544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.40  E-value=0.0099  Score=35.90  Aligned_cols=30  Identities=33%  Similarity=0.423  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      +++.+|.+|...|++++|..+|++++++.+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344455555555555555555555555444

...

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.40  E-value=0.07  Score=57.99  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      ++..|...|.+.|++++|++.|++..+.    +-.| ....|..+-..|...|++++|.+.|++..
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSI----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4555555666666666666666553321    1122 23456666666666666666666666544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.36  E-value=0.1  Score=42.80  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCcccc--ccCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEV--IVDP-----KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~--~~~~-----~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      +.+.+++.+.+++..+... .+.....  ....     ......+...++..+...|++++|+...++++.+.|-     
T Consensus        21 ~~~~~~~~~~~al~ly~G~-~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-----   94 (146)
T PF03704_consen   21 DPEEAIELLEEALALYRGD-FLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY-----   94 (146)
T ss_dssp             -HHHHHHHHHHHHTT--SS-TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred             CHHHHHHHHHHHHHHhCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Confidence            5677788888888877541 1111100  0111     1122345566788899999999999999999999998     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYSG  287 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-~~d~~~  287 (322)
                       ...++..+-.+|...|++.+|+..|++..+...+ .+..|.
T Consensus        95 -~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   95 -DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             -CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence             7888999999999999999999999999776664 455543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.35  E-value=0.032  Score=56.29  Aligned_cols=96  Identities=17%  Similarity=0.031  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      ..++..+..-..+++.++|+.+.+++++.++.      ....|..+|.++-++++.+.|.+.|.+.++.      -|...
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~------cP~~i  719 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKK------CPNSI  719 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc------CCCCc
Confidence            35666777778889999999999999999998      8889999999999999999999999999888      66667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      -.|..|+.+-...|+.-+|...++++.-
T Consensus       720 pLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  720 PLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            7788888888888888888888887753

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.34  E-value=0.086  Score=57.32  Aligned_cols=97  Identities=11%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+..+...|.+.|++++|.+.|++..+..  ...   ...+|..|-..|.+.|++++|++.|++..+.    +-.| ...
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~~P---dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~----Gi~P-d~~  755 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIK--LRP---TVSTMNALITALCEGNQLPKALEVLSEMKRL----GLCP-NTI  755 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCC-CHH
Confidence            34445555566666666666665543321  000   2345666667777777777777777764322    1122 234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .|..+-..+...|++++|.+.+++.++
T Consensus       756 Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        756 TYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            555566677777777777777776654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.33  E-value=0.0094  Score=55.35  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCCc
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g--d~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      .+...-.-.+|...+++|.|...++.+.+..++      ..-+....+++....|  .+.+|...|++..+.      .+
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~  198 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FG  198 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S-
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cC
Confidence            344455678899999999999888876554332      2222233333444444  699999999984322      23


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..+..++.+|.++..+|+|++|.+.++++++.-
T Consensus       199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            456778899999999999999999999987643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.29  E-value=0.012  Score=37.08  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      +.++.+||.+|..+|++++|+.++++++++.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            4568889999999999999999999998887764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.0098  Score=55.90  Aligned_cols=87  Identities=23%  Similarity=0.295  Sum_probs=57.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735          218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  297 (322)
Q Consensus       218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~  297 (322)
                      -+....||..|+..++-.+.+.++     .......++|.+++.+|||++|...|+-+.+-      +...++...+||.
T Consensus        31 dfls~rDytGAislLefk~~~~~E-----EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAc   99 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDRE-----EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLAC   99 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchh-----hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHH
Confidence            344566777877776655433222     23455667888888888888888888765442      3334566778888


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 020735          298 CYTELGDLERAARFYDKY  315 (322)
Q Consensus       298 ~y~~~gd~e~A~~~~~kA  315 (322)
                      |+.-+|.|++|.....++
T Consensus       100 c~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  100 CKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            888888888887766554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.12  Score=46.90  Aligned_cols=104  Identities=14%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +.+-+..++.-.++|.-+++.+++.++.++.     ........||.+..+.||.+.|..+|+.+-+...+.++-.....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-----~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~  253 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-----QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM  253 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence            4556778888889999999999999995532     25666789999999999999999999988877777777777778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +..+.+.+|.-.+++.+|...|.+.+..-
T Consensus       254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D  282 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFAEAHRFFTEILRMD  282 (366)
T ss_pred             HHhhhhhheecccchHHHHHHHhhccccC
Confidence            89999999999999999999998887643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.21  E-value=0.029  Score=54.76  Aligned_cols=111  Identities=13%  Similarity=0.074  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcC
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREG  283 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~----d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~-l~~~~~  283 (322)
                      ..+.+-.+..+|..|+|.+|.+.+... .+...-+    ..-.....++|||-++++.|.|.-++.+|.+|++ .+.+..
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            445666788899999999999876542 1222222    1112445578999999999999999999999995 444321


Q ss_pred             C-----------CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          284 E-----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       284 d-----------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .           .....+..||.|..|...|++-.|.++|.+++..+.
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            1           112456899999999999999999999999998764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.061  Score=49.46  Aligned_cols=85  Identities=22%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCChHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKK  250 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g---~~~~Al~~~~kAl~l~~~~~d~~~~~~  250 (322)
                      +...+...|.+++.+.++                +...+..+|.+++...   .-.++...+++++.+.+.      +..
T Consensus       171 ~~~~A~~AY~~A~rL~g~----------------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~------~ir  228 (287)
T COG4235         171 RASDALLAYRNALRLAGD----------------NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA------NIR  228 (287)
T ss_pred             chhHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc------cHH
Confidence            668888899999999877                5556666777766543   356788899999999998      999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      +++.||..++..|+|.+|+..++..+....
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999888743

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.14  Score=50.01  Aligned_cols=108  Identities=16%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ..+..++..|...+.++++.+|-....+.++.+...+.-...+-.+.-||.+....|+..++.+-.+-+++++++..|.+
T Consensus       443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~  522 (629)
T KOG2300|consen  443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP  522 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence            34556777888899999999999999999999865555556777788999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 020735          287 GSTEAYGAIADCYTELGD--LERAARFYDK  314 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd--~e~A~~~~~k  314 (322)
                      ..-...-.+-.+|...|+  -+.+.+.|.+
T Consensus       523 vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  523 VQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             HHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            888888888899999998  5666655544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.06  E-value=0.08  Score=41.71  Aligned_cols=98  Identities=10%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC----C-------HHHHHHHHHHHHHHHHHcC
Q 020735          215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----K-------YREAIKYHSMVLQISEREG  283 (322)
Q Consensus       215 la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g----d-------~~eAi~~~~kaL~l~~~~~  283 (322)
                      .|..++..||+-+|++..++.+....+-.+.+   ..+..-|.++..+.    +       ...|+++|.++..+     
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----
Confidence            46788999999999999999998776644332   33444555554332    2       44577777777777     


Q ss_pred             CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       284 d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                       .|..+..++.+|.-+...-.|+++..--++++.+..+
T Consensus        74 -sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p  110 (111)
T PF04781_consen   74 -SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP  110 (111)
T ss_pred             -ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence             7777888888888777777788888888888776543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.06  E-value=0.059  Score=56.02  Aligned_cols=102  Identities=11%  Similarity=0.105  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS---------  279 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~---------  279 (322)
                      ..++..+...|...|++++|++.|++..+..-.  .   ...++..+...+.+.|++++|.+.+...++..         
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~--p---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~  364 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS--I---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT  364 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence            446667777888888888888888776542110  0   12234444444444444444444444333220         


Q ss_pred             -------------------HHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          280 -------------------EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       280 -------------------~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                                         ++.. . .....|+.+...|...|+.++|.+.|++..+
T Consensus       365 ~Li~~y~k~G~~~~A~~vf~~m~-~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        365 ALVDLYSKWGRMEDARNVFDRMP-R-KNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC-C-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                               0000 0 1234566666666677777777777666543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.03  E-value=0.5  Score=41.02  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      ++..++...|++++.-.-.               .+...++.++...+..+++..|...+++..+..+...    .+...
T Consensus       103 Gr~~EA~~hy~qalsG~fA---------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~  163 (251)
T COG4700         103 GRYHEAVPHYQQALSGIFA---------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGH  163 (251)
T ss_pred             hhhhhhHHHHHHHhccccC---------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCch
Confidence            3667777778877753211               1456788999999999999999999999888665432    23345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..+|.++-.+|++.+|...|+.++..      .|+ .+.++  -+....++|+.++|..-|....+.+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~------ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISY------YPGPQARIY--YAEMLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHh------CCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHHHH
Confidence            67889999999999999999999988      444 33444  4778889998888887766655433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.077  Score=47.69  Aligned_cols=117  Identities=12%  Similarity=0.025  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccC---CCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 020735          155 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG---SRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE  231 (322)
Q Consensus       155 r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~---~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~  231 (322)
                      ++.....+.+.+..++...++.++...|+.++.....-   .+..+.+ ...-.....-.+++...++...|+|-++++.
T Consensus       174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~tpLllNy~QC~L~~~e~yevleh  252 (329)
T KOG0545|consen  174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMITPLLLNYCQCLLKKEEYYEVLEH  252 (329)
T ss_pred             hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence            44455577888889999999999999999999765441   0111100 0111122334678899999999999999999


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      -.+.+...+.      ...+|+..|.+....-+..+|...+.+++++
T Consensus       253 ~seiL~~~~~------nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  253 CSEILRHHPG------NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             HHHHHhcCCc------hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            9999999998      9999999999999999999999999999999

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.90  E-value=0.043  Score=54.43  Aligned_cols=88  Identities=19%  Similarity=0.121  Sum_probs=73.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735          222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  301 (322)
Q Consensus       222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~  301 (322)
                      ..+.+.|.+......+.+|+      -+.-++..|..+...|+.++|++.|++++....+-  ..-...+++.+|+++..
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~  317 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMF  317 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHH
Confidence            45678888899999998887      67778899999999999999999999988532221  22345689999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 020735          302 LGDLERAARFYDKYIS  317 (322)
Q Consensus       302 ~gd~e~A~~~~~kAl~  317 (322)
                      +.||++|.+++.+..+
T Consensus       318 ~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  318 QHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HchHHHHHHHHHHHHh
Confidence            9999999999998775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.88  E-value=0.33  Score=49.83  Aligned_cols=115  Identities=16%  Similarity=0.084  Sum_probs=85.9

Q ss_pred             CcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          204 PKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       204 ~~~~~a~~~~~la~~y~-~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      +...++.+.+.+|.+++ ...+++.|..++++++.+.++.+-....-.+.+-++.++.+.+... |....++.|+.++..
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            34568899999999988 7899999999999999999873333334555667788888888777 999999999998864


Q ss_pred             CCCchHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          283 GEYSGSTEAYGAI-ADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       283 ~d~~~~a~a~~~L-g~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +... ...++..+ ...+...+|+..|.+.+++....+.
T Consensus       133 ~~~~-w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~  170 (608)
T PF10345_consen  133 GHSA-WYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN  170 (608)
T ss_pred             Cchh-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence            4333 22333333 3333334799999999999887764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.87  E-value=0.19  Score=52.18  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHhCCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAAL----ELAQNVKDPI----------EEKKAARGLGASLQRQGKYREAIKYHSM  274 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl----~l~~~~~d~~----------~~~~a~~~LG~~~~~~gd~~eAi~~~~k  274 (322)
                      -..+++.|..+...+|.+.|+++|+++-    ++.+-+.+.+          .....|.+.|...-..|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3467788888888999999999998752    2222111111          1223467788888899999999999987


Q ss_pred             HHHHHHH---------------cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          275 VLQISER---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       275 aL~l~~~---------------~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      |-.....               +.+..+.-.+.|.||.-|...|++.+|..+|.+|-.
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            6543221               111223345788899999999999999999988754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.84  E-value=0.14  Score=50.41  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ..+-..|+.+.++.|+.+||++.++..++...    ..+...++++|-.++.+++.|.++...+.++=+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            45567899999999999999999998776521    123456788999999999999988887777643

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.73  E-value=0.014  Score=33.23  Aligned_cols=30  Identities=27%  Similarity=0.497  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++.++|.++...+++++|..++++++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            455566666666666666666666655443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.73  E-value=0.21  Score=36.89  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      +...+..|.-.+...+.++|+..++++++...+   ....-.++-.|..+|...|+|++++++..+=++++.+.+++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            344555677777788888888888888875554   33344456667777888888888888888877777766653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.73  E-value=0.089  Score=54.71  Aligned_cols=97  Identities=10%  Similarity=0.043  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ..++..+...|.+.|+.++|++.|++..+..-  ..   ...++..+-..+...|+.++|.++|+...+.   .+-.| .
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~--~P---d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~---~g~~p-~  461 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGV--AP---NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN---HRIKP-R  461 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC---CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCC-C
Confidence            34566677777888888888888877654211  10   2233444555555566666666666554321   11111 1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      ...|..+...|...|++++|.+.+++
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHH
Confidence            23344455555555555555554443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.72  E-value=0.22  Score=45.05  Aligned_cols=90  Identities=20%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q 020735          225 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  304 (322)
Q Consensus       225 ~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd  304 (322)
                      -...++.+++|++.....+...........+|..|+..|+|++|+++|+.+.....+.+=..-...+...+-.|+...|+
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~  233 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD  233 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence            34567788899998888777777788888999999999999999999999987777666555677889999999999999


Q ss_pred             HHHHHHHHHH
Q 020735          305 LERAARFYDK  314 (322)
Q Consensus       305 ~e~A~~~~~k  314 (322)
                      .+..+.+--+
T Consensus       234 ~~~~l~~~le  243 (247)
T PF11817_consen  234 VEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHH
Confidence            8887765433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.71  E-value=1.2  Score=42.56  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      -...++.-+..-...||++.|-.+..++-+..++   .  .-......+.+...+||+..|.....+.++.      .|.
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr  185 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---D--TLAVELTRARLLLNRRDYPAARENVDQLLEM------TPR  185 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---c--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcC
Confidence            4556677788888999999999999998887443   1  2334566788899999999999999999999      788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                      ...+......+|...|+|.+...+..+.
T Consensus       186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         186 HPEVLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             ChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8889999999999999999888776553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.70  E-value=0.023  Score=33.82  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ++++++|.++...|++++|++.|+++++.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            36788999999999999999999998876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.046  Score=50.46  Aligned_cols=99  Identities=23%  Similarity=0.263  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-----  282 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~-----  282 (322)
                      .+...++.|-+.++.|+|+.|+.-|+.|++..--      .+..-|+++.++++.++|..|+++..+.++..-+.     
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg  216 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG  216 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence            5667888999999999999999999999997654      55667899999999999999999998877654331     


Q ss_pred             -------------CC-----CchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735          283 -------------GE-----YSGSTEAYGAIADCYTELGDLERAARFY  312 (322)
Q Consensus       283 -------------~d-----~~~~a~a~~~Lg~~y~~~gd~e~A~~~~  312 (322)
                                   ++     ......+++..+-++...++++.|.+.+
T Consensus       217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                         00     0124456777788899999999888754

>PLN03077 Protein ECB2; Provisional

Probab=95.64  E-value=0.11  Score=55.27  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      +..++..+...|...|+.++|++.|++..+..-. .    ...++..+-..+.+.|++++|.++|++..+.   .+..| 
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~-P----d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P-  623 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-P----DEVTFISLLCACSRSGMVTQGLEYFHSMEEK---YSITP-  623 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CcccHHHHHHHHhhcChHHHHHHHHHHHHHH---hCCCC-
Confidence            3446667777888888888888888886653211 1    1233445555677888888888888875532   22233 


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                      ....|..+...+...|++++|.+.+++.
T Consensus       624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        624 NLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            3466788888888888888888887763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.64  E-value=0.18  Score=43.33  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735          228 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  307 (322)
Q Consensus       228 Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~  307 (322)
                      -++.++.-++-+++...+.....++..+|.-|.+.||+++|++.|.++.+.+.   ......+.+.++-.+....+||..
T Consensus        15 ~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~   91 (177)
T PF10602_consen   15 ELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSH   91 (177)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHH
Confidence            34445555666666666677788999999999999999999999999877633   133366778889999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 020735          308 AARFYDKYISRLES  321 (322)
Q Consensus       308 A~~~~~kAl~i~e~  321 (322)
                      ...+..++-.+.+.
T Consensus        92 v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   92 VEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.60  E-value=0.3  Score=44.89  Aligned_cols=91  Identities=22%  Similarity=0.288  Sum_probs=70.4

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH----cCCCc----hH
Q 020735          220 LRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER----EGEYS----GS  288 (322)
Q Consensus       220 ~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~g-d~~eAi~~~~kaL~l~~~----~~d~~----~~  288 (322)
                      ..+||++.|..++.++-.+....  ......+..+|+.|......+ ++++|+.++++++++.+.    ....+    ..
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46899999999999998877422  222346778999999999999 999999999999999644    11222    24


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAAR  310 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~  310 (322)
                      ..++..++.+|...+.++...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH
Confidence            5678889999999998764443

It is also involved in sporulation [].

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.19  Score=46.97  Aligned_cols=104  Identities=19%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  237 (322)
Q Consensus       158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~  237 (322)
                      ..+...+++...++..++..|++.|.+.+..-            .++....+..+.+.|-+.+..|+|..|+.-..+++.
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k------------c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK------------CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc------------CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44578888889999999999999999999754            234455677888999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  279 (322)
Q Consensus       238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~  279 (322)
                      +.|.      ...+++.-+.+++.+.++.+|..+++..+++.
T Consensus       148 ~~P~------h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  148 LKPT------HLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             cCcc------hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9998      89999999999999999999999999887763

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.35  E-value=1.2  Score=35.86  Aligned_cols=105  Identities=11%  Similarity=0.033  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh-----HH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP-----IE  247 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~-----~~  247 (322)
                      ..++++...++++++..+.  ...+.  .-+..--++.++-.++..+..+|+|++++..-.+++....+.++-     ..
T Consensus        23 g~~~eAa~s~r~AM~~srt--iP~eE--aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRT--IPAEE--AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTT--S-TTS-----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcc--CChHh--hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            3667888899999987754  11111  112223356788889999999999999999999888877653322     23


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      ...+.++.+..+...|+.++|+..|+++-++..+
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE  132 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE  132 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            4456778899999999999999999999887554

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.35  E-value=0.03  Score=54.72  Aligned_cols=123  Identities=10%  Similarity=0.063  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCC----Ch---
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVK----DP---  245 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~~~----d~---  245 (322)
                      +.+.+...|.++...........+......+.-.....++++|.+++..+.|.-+..+|.+|++ ....+.    ..   
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            3445555677777654331010111111122223445668899999999999999999999995 332221    11   


Q ss_pred             ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735          246 ----IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  302 (322)
Q Consensus       246 ----~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~  302 (322)
                          ......+||.|..|...|++-.|.++|.++.....      .++..|..+|.|....
T Consensus       328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh------~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH------RNPRLWLRLAECCIMA  382 (696)
T ss_pred             ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence                11345799999999999999999999999998843      4567888999887654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.29  E-value=0.97  Score=49.55  Aligned_cols=100  Identities=17%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      ..+..+..+|..-+.+++|.++++..++-..+      ....|..+|..+.++++-++|.+.+.+|++-.++    ....
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv 1600 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHV 1600 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhH
Confidence            35666777777777778888777777776665      5666777777777777777777777777766442    1133


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ......|...++.||.+.+...|+.-+.-.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence            444455666666666666666666555443

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=1.7  Score=40.76  Aligned_cols=110  Identities=12%  Similarity=0.097  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...++.+.|.-|.+.||-+.|++.+.+..+-.-.++-+.....+...+|..|....-..   +..++|-.+.++-+|..-
T Consensus       103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWeR  179 (393)
T KOG0687|consen  103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWER  179 (393)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChhh
Confidence            45688899999999999999999999999988888888888888889998886544333   444455556666665443


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .-..-..-|.-.....++.+|...|-.++..+.
T Consensus       180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            334444457777788899999999988776553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.97  E-value=0.03  Score=54.45  Aligned_cols=109  Identities=15%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +.++.......-..+.++..|.+++...+.                .+...-+.+..+.+.++|..|+.-..+|+++.+.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn----------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~   70 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPN----------------CAIYFANRALAHLKVESFGGALHDALKAIELDPT   70 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCc----------------ceeeechhhhhheeechhhhHHHHHHhhhhcCch
Confidence            334444445555788899999999998886                3333445678899999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  298 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~  298 (322)
                            ...+|+.-|.+....+.+.+|...|++...+      .|....+...+..|
T Consensus        71 ------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l------~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   71 ------YIKAYVRRGTAVMALGEFKKALLDLEKVKKL------APNDPDATRKIDEC  115 (476)
T ss_pred             ------hhheeeeccHHHHhHHHHHHHHHHHHHhhhc------CcCcHHHHHHHHHH
Confidence                  8999999999999999999999999999888      56555555555444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.96  E-value=1.4  Score=40.53  Aligned_cols=102  Identities=12%  Similarity=0.044  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          211 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       211 ~~~~la~~y~~-~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      .+...|..-+. .++.+.|...|+.+++..+.      ....+.....-+...|+.+.|...|++++...   ......-
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~  107 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISSL---PKEKQSK  107 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHH
Confidence            45556777555 67777799999999999887      55666666677788999999999999998651   1111123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..|......-...|+.+.....++++.+.+++
T Consensus       108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            46667777778889999999999999887754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=1.5  Score=44.62  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+.+-|.-.++..+|..|++.|...+...+.-......+....+|..+|..+.+.+.|.+++++|-+.      ++..+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------d~~~~l  429 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------DRQSPL  429 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------ccccHH
Confidence            45567888899999999999999998877643323334788999999999999999999999999887      666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .-..+-.+....+.-++|+....+...++.
T Consensus       430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  430 CQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            777777777888888999998887776553

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.38  Score=47.22  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALEL-AQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l-~~~~~----d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      -.+....++|..|.+.++-+.   +| ++++. .+...    .....+.+++--|...+.++++.||.....+.++++..
T Consensus       402 l~a~~nlnlAi~YL~~~~~ed---~y-~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana  477 (629)
T KOG2300|consen  402 LQAFCNLNLAISYLRIGDAED---LY-KALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA  477 (629)
T ss_pred             HHHHHHHhHHHHHHHhccHHH---HH-HHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch
Confidence            366678899999998776332   22 23332 22211    12235667888899999999999999999999999876


Q ss_pred             cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          282 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       282 ~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+.....+-.+..||.+....|+..++.+-..-+++.+.
T Consensus       478 ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  478 EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence            666556666788899999999999999988777776654

>PLN03077 Protein ECB2; Provisional

Probab=94.61  E-value=0.38  Score=51.28  Aligned_cols=54  Identities=11%  Similarity=0.148  Sum_probs=36.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          258 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .+...++.+.+....++.+++      .|..+..|..++++|...|+|++|.+..+...+
T Consensus       666 ac~~~~~~e~~e~~a~~l~~l------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        666 ACRIHRHVELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHcCChHHHHHHHHHHHhh------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            344445555555444455544      555666788899999999999999988776543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.58  E-value=0.081  Score=49.04  Aligned_cols=79  Identities=28%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      .++...++.|.-.+..|+.++|...|+-|+.++|.      .++++..+|...-..++..+|-.+|-+|+.+      .|
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti------sP  181 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTI------SP  181 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeee------CC
Confidence            46667778888889999999999999999999999      8999999999999999999999999999999      77


Q ss_pred             hHHHHHHHHHH
Q 020735          287 GSTEAYGAIAD  297 (322)
Q Consensus       287 ~~a~a~~~Lg~  297 (322)
                      +..+++.|.+.
T Consensus       182 ~nseALvnR~R  192 (472)
T KOG3824|consen  182 GNSEALVNRAR  192 (472)
T ss_pred             CchHHHhhhhc
Confidence            77777776544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.49  E-value=0.47  Score=35.01  Aligned_cols=67  Identities=15%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ....-|.-++.+++.++|+..++++++...   +.++...++..+..+|.+.|+|++.+++--+=+++++
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456667789999999999999987744   3556777888999999999999999999888777765

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.46  E-value=0.99  Score=44.37  Aligned_cols=94  Identities=20%  Similarity=0.183  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .++..|.--.++.+.+.|...+-.|+..+|+       ....-+.-..-.++++++.....|++-|+.      .|....
T Consensus       406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~------~Pe~c~  472 (677)
T KOG1915|consen  406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEF------SPENCY  472 (677)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc------ChHhhH
Confidence            3444455555555666666655555555553       222222223334445555555555555555      555555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ++...|..-..+||.+.|...|+-|++
T Consensus       473 ~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  473 AWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            555555555566666666555555553

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.36  E-value=3.4  Score=38.25  Aligned_cols=133  Identities=13%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .++.++.+.+.+.....          .+-......++.++|..|...++.+.+.+...+.++-+-..+-+...-.+-..
T Consensus        91 neeki~Elde~i~~~ee----------dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR  160 (412)
T COG5187          91 NEEKIEELDERIREKEE----------DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR  160 (412)
T ss_pred             hHHHHHHHHHHHHHHhh----------cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            34556666555554433          12244567889999999999999999999999988888777777666667778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ||.+|-.+.=.++.++...   .+.++-+|..-....-..-|.-.+...++.+|...+-..+..++
T Consensus       161 lg~~y~d~~vV~e~lE~~~---~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         161 LGLIYGDRKVVEESLEVAD---DIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHhhccHHHHHHHHHHHH---HHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            8988866554554444443   45555555433333333446666777788899888877765543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.29  E-value=0.92  Score=47.50  Aligned_cols=105  Identities=15%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +...++....+.+...|.                ...+..-.|.+..++|+.++|..+++..-.....      .-..+.
T Consensus        24 qfkkal~~~~kllkk~Pn----------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~------D~~tLq   81 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPN----------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT------DDLTLQ   81 (932)
T ss_pred             HHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC------chHHHH
Confidence            344555556666666665                4445556788899999999998555443332222      445567


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  307 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~  307 (322)
                      -+-.+|..++++++|..+|++++..      .|. -...+.+=.+|..-++|.+
T Consensus        82 ~l~~~y~d~~~~d~~~~~Ye~~~~~------~P~-eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen   82 FLQNVYRDLGKLDEAVHLYERANQK------YPS-EELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhh------CCc-HHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999887      565 4555555566666666653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.15  E-value=1.1  Score=40.39  Aligned_cols=90  Identities=12%  Similarity=0.037  Sum_probs=67.3

Q ss_pred             HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 020735          176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  255 (322)
Q Consensus       176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~L  255 (322)
                      ...++.+.++......          .+...........+|..|+..|++++|+.+|+.+...+++-+=.......+..+
T Consensus       155 ~~iI~lL~~A~~~f~~----------~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l  224 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKK----------YGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL  224 (247)
T ss_pred             HHHHHHHHHHHHHHHH----------hccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            3445555566655543          122233444667799999999999999999999988888766666678889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 020735          256 GASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       256 G~~~~~~gd~~eAi~~~~ka  275 (322)
                      -.++...|+.++.+.+.-+.
T Consensus       225 ~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  225 LECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            99999999999887776553

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>smart00028 TPR Tetratricopeptide repeats

Probab=93.92  E-value=0.08  Score=29.84  Aligned_cols=29  Identities=31%  Similarity=0.570  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .++.++|.++...+++++|+.++++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35778899999999999999999998876

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.92  E-value=1.9  Score=39.32  Aligned_cols=79  Identities=16%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      .+..|.-+|++.-+.++.      ....+.+++.+...+|+|++|...++.++.-      ++..++.+.|+-.+-...|
T Consensus       188 k~qdAfyifeE~s~k~~~------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPP------TPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPETLANLIVLALHLG  255 (299)
T ss_pred             hhhhHHHHHHHHhcccCC------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhC
Confidence            466777777766554444      6778899999999999999999999999876      6777888889888888888


Q ss_pred             CHHHHHHHHHH
Q 020735          304 DLERAARFYDK  314 (322)
Q Consensus       304 d~e~A~~~~~k  314 (322)
                      ...++..-+-.
T Consensus       256 kd~~~~~r~l~  266 (299)
T KOG3081|consen  256 KDAEVTERNLS  266 (299)
T ss_pred             CChHHHHHHHH
Confidence            87666554433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.88  E-value=1  Score=41.08  Aligned_cols=63  Identities=17%  Similarity=0.226  Sum_probs=43.7

Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +..|+.+|..    .+++.+|.-+|++-   +++   .+..+......+.|...+|+|++|....+.++..-.
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~---s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEEL---SEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHH---hcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            4445555443    24566677666653   222   334567788899999999999999999999987543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.85  E-value=0.44  Score=32.43  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  294 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~  294 (322)
                      ..+|.++..+++.|+|++|..+.+.++++      .|.+..+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~------eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEI------EPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TTS-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhh------CCCcHHHHHH
Confidence            35788999999999999999999999999      6665555443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=1.1  Score=41.39  Aligned_cols=100  Identities=23%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VLQ  277 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~k---------------aL~  277 (322)
                      +..+.-....+++.+|...|..++...++      ...+...++.+|...|+.++|...+..               -|+
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~  211 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE  211 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            33456666778888888888888888887      567777888888888888777666543               133


Q ss_pred             HHHH-------------cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          278 ISER-------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       278 l~~~-------------~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +..+             ...+|+...+-+.+|..|...|+++.|.+.+-..+..
T Consensus       212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3332             2235667788889999999999999999887665543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.79  E-value=0.27  Score=52.54  Aligned_cols=107  Identities=17%  Similarity=0.123  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      ++....++.....|+.|+..|++...-.|   +...--++.+.+|.+...+-.-..--+.|.+|+...+...+.++.+.-
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFP---GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE  554 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCC---CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH
Confidence            34456677778889999999988666444   344455678888888876644444447788888887777778888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |..-|.+|..+|+|++-++.|..|++.+.+
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999987754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.78  E-value=0.22  Score=45.91  Aligned_cols=94  Identities=18%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735          214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAY  292 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~-~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~  292 (322)
                      .......+.+..+.|-..|.+|++.    +.  .....|...+..-+. .++.+.|...|+.+++.      .+.....+
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~----~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~------f~~~~~~~   73 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKD----KR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK------FPSDPDFW   73 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC----CC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH------HTT-HHHH
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcC----CC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------CCCCHHHH
Confidence            3344455555688888888888632    11  133456666777666 56677799999999987      33344444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          293 GAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..-..-+...||.++|...|++++..+
T Consensus        74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   74 LEYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            444566778999999999999998654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.58  E-value=0.76  Score=46.62  Aligned_cols=101  Identities=24%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQ  277 (322)
Q Consensus       208 ~a~~~~~la~~y~~~-----g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g-----d~~eAi~~~~kaL~  277 (322)
                      ...+...+|.+|+.-     .|.++|+.+++.+.+-.... .......+.+.+|.+|.+..     +++.|+.+|.++-+
T Consensus       243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            345667778877654     68999999999887721110 00003446888898888743     67889998888764


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 020735          278 ISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS  317 (322)
Q Consensus       278 l~~~~~d~~~~a~a~~~Lg~~y~~~g---d~e~A~~~~~kAl~  317 (322)
                      .        +.+.+.+.+|.+|..-.   |+.+|.++|..|..
T Consensus       322 ~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  322 L--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             c--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            4        34567888888887766   56788888888764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.40  E-value=0.55  Score=48.32  Aligned_cols=101  Identities=31%  Similarity=0.438  Sum_probs=63.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHH------HHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH--------------
Q 020735          214 KTGKNFLRNQDLEKAFTEFK------AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS--------------  273 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~------kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~--------------  273 (322)
                      ..|.+|-+..++++|+++|+      +++++++- .-+......--..|.-+-..|+++.|+.+|-              
T Consensus       666 kagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~  744 (1636)
T KOG3616|consen  666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIG  744 (1636)
T ss_pred             hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhh
Confidence            35666777788999999765      45665542 1122222223334555555666666665553              


Q ss_pred             -----HHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          274 -----MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       274 -----kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                           ++|.+...+.|.......|..++.-|...|+|+.|.+.|.++
T Consensus       745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                 344444445555555556777899999999999999988765

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.30  E-value=1.2  Score=37.49  Aligned_cols=87  Identities=18%  Similarity=0.069  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      -...++....+-...++.+.+...+....-+.|+      ....-..-|.++...|+|.+|+..++...+-      .+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~   76 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APG   76 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCC
Confidence            3446667777778888999999999888888888      7777778899999999999999999996544      666


Q ss_pred             HHHHHHHHHHHHHHcCCHH
Q 020735          288 STEAYGAIADCYTELGDLE  306 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e  306 (322)
                      .+.+--.++.|+..+||.+
T Consensus        77 ~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   77 FPYAKALLALCLYALGDPS   95 (160)
T ss_pred             ChHHHHHHHHHHHHcCChH
Confidence            6777778899999999875

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.27  E-value=0.042  Score=51.45  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..+.+++.+..++...+.                .+..+-..|.++..++....|+.-+..++++.++      .+.-|-
T Consensus       129 ~~~~ai~~~t~ai~lnp~----------------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~yk  186 (377)
T KOG1308|consen  129 EFDTAIELFTSAIELNPP----------------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYK  186 (377)
T ss_pred             chhhhhcccccccccCCc----------------hhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccc
Confidence            567777777777777766                5666677899999999999999999999999988      666777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .-|.....+|++.+|..+++.+.++
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhc
Confidence            8888899999999999999998877

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.21  E-value=0.31  Score=50.83  Aligned_cols=88  Identities=22%  Similarity=0.285  Sum_probs=71.1

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735          221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  300 (322)
Q Consensus       221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~  300 (322)
                      ..+++.+|+....+.++..|+      ...+...-|.+..++|++++|..+++..-..      .......+-.+-.||.
T Consensus        21 d~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~------~~~D~~tLq~l~~~y~   88 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEALYGL------KGTDDLTLQFLQNVYR   88 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhhhccC------CCCchHHHHHHHHHHH
Confidence            457889999999999998887      6667777788999999999999666543222      3334566778999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhh
Q 020735          301 ELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       301 ~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+|++++|...|++++...+
T Consensus        89 d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   89 DLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHhhhhHHHHHHHHHHhhCC
Confidence            99999999999999987665

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.20  E-value=0.9  Score=43.95  Aligned_cols=105  Identities=19%  Similarity=0.090  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CC-------hH--HHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---KD-------PI--EEKKAARGLGASLQRQGKYREAIKYHS  273 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~---~d-------~~--~~~~a~~~LG~~~~~~gd~~eAi~~~~  273 (322)
                      +....+.+.-|..++++++|..|..-|..++++..+-   ++       ..  ....+...|..+|...++.+-|+.+-.
T Consensus       173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~h  252 (569)
T PF15015_consen  173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSH  252 (569)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Confidence            3456677888999999999999999999999998652   11       11  123346689999999999999999999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          274 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       274 kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      ++|.+      +|....-+..-|.|+..+.+|.+|.+.+--+.
T Consensus       253 rsI~l------nP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  253 RSINL------NPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hhhhc------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998      88888888899999999999999988665443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.12  E-value=1.8  Score=44.84  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------H-------------HHHHHcCCCchHHHHH
Q 020735          232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------L-------------QISEREGEYSGSTEAY  292 (322)
Q Consensus       232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka------L-------------~l~~~~~d~~~~a~a~  292 (322)
                      +.+++.+...+.|.......|-.++.-|...|+|+-|.+.|.++      |             +++.+-..+......|
T Consensus       748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y  827 (1636)
T KOG3616|consen  748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY  827 (1636)
T ss_pred             hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence            34555555555554443444445566677777777777766542      2             2333333333445556


Q ss_pred             HHHHHHHHHcCCHHHHHHHH
Q 020735          293 GAIADCYTELGDLERAARFY  312 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~  312 (322)
                      ...+.-..+.|+|.+|...|
T Consensus       828 iakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  828 IAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHhHHhHHhhcchhhhhhee
Confidence            66677777888887777665

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.05  E-value=0.18  Score=31.89  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|..||.+-...++|++|..-|++++++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.94  E-value=1  Score=46.99  Aligned_cols=87  Identities=18%  Similarity=0.321  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHcCCCchHH----------HHHHHHHH
Q 020735          232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV----LQISEREGEYSGST----------EAYGAIAD  297 (322)
Q Consensus       232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka----L~l~~~~~d~~~~a----------~a~~~Lg~  297 (322)
                      +.+|+++++ ..|.......||+.+.-+...+|.+.|+++|+++    .++..-..++|...          ..|.-.|.
T Consensus       842 w~eA~eiAE-~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq  920 (1416)
T KOG3617|consen  842 WSEAFEIAE-TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ  920 (1416)
T ss_pred             HHHHHHHHh-hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence            334455554 3555666778999999999999999999999985    33333334444333          34555899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhh
Q 020735          298 CYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       298 ~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .....|+.+.|+.+|.+|-+.+
T Consensus       921 YlES~GemdaAl~~Y~~A~D~f  942 (1416)
T KOG3617|consen  921 YLESVGEMDAALSFYSSAKDYF  942 (1416)
T ss_pred             HHhcccchHHHHHHHHHhhhhh
Confidence            9999999999999999987654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.85  E-value=6.7  Score=36.48  Aligned_cols=114  Identities=16%  Similarity=0.139  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHc-
Q 020735          205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE-  282 (322)
Q Consensus       205 ~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~-l~~~~-  282 (322)
                      ....+..++..+....+.|+++.|...+.++....+...+.  .+.....-+...+..|+..+|+..++..++ ..... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            33467788899999999999999999999887755332221  334455667889999999999999988887 22211 


Q ss_pred             --------------------------CCCchHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhh
Q 020735          283 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE  320 (322)
Q Consensus       283 --------------------------~d~~~~a~a~~~Lg~~y~~~------gd~e~A~~~~~kAl~i~e  320 (322)
                                                ......+.++..+|......      ++.+++...|++++++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~  289 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP  289 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence                                      11233567788888888888      889999999999987654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.85  E-value=2.3  Score=38.84  Aligned_cols=96  Identities=22%  Similarity=0.263  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQRQG-------KYREAIKYHSMVL  276 (322)
Q Consensus       209 a~~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~-~~a~~~LG~~~~~~g-------d~~eAi~~~~kaL  276 (322)
                      ..+.+.+|..|..    ..|+.+|..+|+++.+.-..      . ..+.+.+|..|..-.       +...|+.+|.++-
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~------~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa  182 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV------EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA  182 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence            3466778888887    45999999999999885433      2 455778887777642       2336888888875


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          277 QISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       277 ~l~~~~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                      ..        ....+..++|.+|..    ..|+++|..+|+++-+.
T Consensus       183 ~~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         183 EL--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             Hh--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence            54        256788999988865    44899999999998653

>PRK10941 hypothetical protein; Provisional

Probab=92.69  E-value=0.89  Score=41.74  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ....+.+|=.+|.+.++++.|+.+.+..+.+      .|..+.-+.-.|.+|.++|.+..|...++..++..
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            3344555555555555555555555555555      44444445555555555555555555555555444

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.56  E-value=1.6  Score=41.98  Aligned_cols=111  Identities=11%  Similarity=-0.045  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +..++.+..+|-..++...--..+..-+..+.--.|....+...+.|=..|...+.|+.|-..-.++.  .++...+...
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~  246 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEW  246 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHH
Confidence            44667777778777876666556665555554334666666667777788888888888888777653  1122223356


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +...+.+|.+..-++||..|.+++-+|+..+++
T Consensus       247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            677888999999999999999999998877653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.36  E-value=15  Score=37.76  Aligned_cols=135  Identities=10%  Similarity=0.046  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..+.|...+.+++.....          .+-.+....+..-++.++...+... |....++.++..+..+..... .++.
T Consensus        75 n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~-~~fr  142 (608)
T PF10345_consen   75 NLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY-YAFR  142 (608)
T ss_pred             CHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH-HHHH
Confidence            456666667777766643          1222234556666788888887777 999999999988874443322 2222


Q ss_pred             HH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GL-GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~L-G~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+ ...+...+|+..|++.++....++...++......+...-+.+....+..+++.+..++++..+.
T Consensus       143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~  210 (608)
T PF10345_consen  143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQAR  210 (608)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence            23 22222338999999999999999888787777777777788888889989999999988866543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.22  E-value=1.4  Score=43.57  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=72.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC------------
Q 020735          217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE------------  284 (322)
Q Consensus       217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d------------  284 (322)
                      ....+..++++-+++-++|+++.++      .+.+|.-|+.-  ...-..+|.++|+++++..+..-.            
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pd------CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPD------CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhh------hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            4445678999999999999999998      77788766642  233467888888888887766210            


Q ss_pred             -------CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          285 -------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       285 -------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                             -.....+...+|.|..++|+.++|++.++..++.++
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p  290 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP  290 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence                   111245667799999999999999999999886543

The molecular function of this protein is uncertain.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.10  E-value=1.1  Score=45.52  Aligned_cols=92  Identities=29%  Similarity=0.401  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHc
Q 020735          211 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE  282 (322)
Q Consensus       211 ~~~~la~~y~~~g-----~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g---d~~eAi~~~~kaL~l~~~~  282 (322)
                      +.+.+|.+|....     ++..|+.+|.++-+.-        .+.+.+.+|.++....   |+..|.++|..|.      
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa------  355 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA------  355 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHH------
Confidence            5667888888743     7788999998887743        4567888888888755   6789999999986      


Q ss_pred             CCCchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 020735          283 GEYSGSTEAYGAIADCYTEL----GDLERAARFYDKYISR  318 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~----gd~e~A~~~~~kAl~i  318 (322)
                        ..+...+++++|.+|..=    -+.++|..+|.++.+.
T Consensus       356 --~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~  393 (552)
T KOG1550|consen  356 --KAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK  393 (552)
T ss_pred             --HcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence              345678899999998743    3788999999998764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.96  E-value=0.22  Score=49.85  Aligned_cols=96  Identities=19%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          213 LKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       213 ~~la~~y-~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      +++|..| ...|+...|..++..|+...|.-.+     ..+.+|+.+...-|-..+|-..+.+++.+      ....+..
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~  678 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLT  678 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchH
Confidence            3444554 4579999999999999988876322     24678899999999999999999999999      4555677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++.+|..|..+.+.+.|++.++.|++.-
T Consensus       679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  679 FLSLGNAYLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             HHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence            8999999999999999999999998754

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.93  E-value=8.5  Score=35.29  Aligned_cols=108  Identities=17%  Similarity=0.107  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHh---C-C----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN---V-K----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  277 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g-~~~~Al~~~~kAl~l~~~---~-~----d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~  277 (322)
                      ..+..+++.|...+..+ +++.|..+++++.++.+.   . .    .......++..++.+|...+.++...+ ...+++
T Consensus        33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~  111 (278)
T PF08631_consen   33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence            45668899999999999 999999999999999533   1 1    113456779999999999988875555 334444


Q ss_pred             HHH-HcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          278 ISE-REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       278 l~~-~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ..+ +.++++...  +..+-.+.. .++.+++.+.+.+.+.-
T Consensus       112 ~l~~e~~~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  112 LLESEYGNKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHhCCCCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHh
Confidence            443 334444322  233333333 78888888888777654

It is also involved in sporulation [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.84  E-value=0.43  Score=32.45  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +++|.+|..+..+|+|++|..+.+..+++-+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP   32 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP   32 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            4688999999999999999999999998754

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=91.32  E-value=1.9  Score=40.69  Aligned_cols=107  Identities=7%  Similarity=-0.074  Sum_probs=86.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA  291 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a  291 (322)
                      -.+...|+..++|.+|+......+.-.+++.|+......+..=+.+|+...+..+|...+..|-..+...-.+|. .+..
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            357889999999999999999999999999999888888887888899999999999988887766655555554 3333


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      -..-|..+..-.||..|.-||-+|.+=+
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf  239 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGF  239 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccc
Confidence            3344888888899999999998887633

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.29  E-value=5  Score=35.00  Aligned_cols=98  Identities=15%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             HHHHHHHHcCCHH---HHHHHHHHHHHHHH---------------hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          214 KTGKNFLRNQDLE---KAFTEFKAALELAQ---------------NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       214 ~la~~y~~~g~~~---~Al~~~~kAl~l~~---------------~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      ..|..|+...+.+   +|-..|+++++...               ..+...+-..+...++..+...|++++|+..++.+
T Consensus        36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~  115 (207)
T COG2976          36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA  115 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3466666554444   45555666555432               22233444455667888999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       276 L~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      +...+   |....+.+-.+||.+...+|++++|...++.
T Consensus       116 l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976         116 LAQTK---DENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             Hccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            87644   3444667788999999999999999987764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.21  E-value=17  Score=38.58  Aligned_cols=112  Identities=17%  Similarity=0.090  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCC--HHHHHHHHHH-----------
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK--YREAIKYHSM-----------  274 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd--~~eAi~~~~k-----------  274 (322)
                      .+.+...+|.+..-.|++++|..+..++.+++...+.......+.+-.+.+...+|+  +.+....+..           
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~  575 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR  575 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence            566778899999999999999999999999998888877777777777777777773  2222222221           


Q ss_pred             ---------------------------HHHHHHHcCCCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          275 ---------------------------VLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       275 ---------------------------aL~l~~~~~d~~~-~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                                                 .+++.......+. ...+++.|+.++...||+++|....++.....
T Consensus       576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence                                       1111111111111 22234589999999999999999888876654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.00  E-value=0.55  Score=29.63  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      .++..||.+-...++|++|++-|++++++-++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35667788888888888888888888777554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.90  E-value=0.32  Score=27.69  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      +.+++|.++...||+++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34555555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.74  E-value=5.2  Score=43.78  Aligned_cols=117  Identities=15%  Similarity=0.077  Sum_probs=95.3

Q ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN--VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       204 ~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~--~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      +....+..+.+++...+..++...|+..+.+++.+..=  -.+.+.......+++.++...++++.|+++.+.|+.+.+.
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            44456778888999999999999999998888776431  1234456667789999999999999999999999998887


Q ss_pred             cCC--CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          282 EGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       282 ~~d--~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...  ....+..+..++..+...+++..|....+....++.
T Consensus      1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred             hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence            643  335777899999999999999999999998888764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.38  E-value=14  Score=41.17  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....|...|...+++.+-+.|-..+.+|++..|+    .........-+..-++.||.+.+...|+-.+.-      .|.
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------yPK 1632 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------YPK 1632 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------Ccc
Confidence            4557778899999988888999999999998886    223444556677888999999999999988777      666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ..+.|....+.-...|+.+.+...|++++.+
T Consensus      1633 RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1633 RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            6677777777788889999999999988864

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=90.35  E-value=0.44  Score=42.53  Aligned_cols=57  Identities=14%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          259 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       259 ~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ....+|.+.|.+.|.+++++      -|..+..|..+|....+.|+++.|...|++.+++-++
T Consensus         5 ~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           5 LAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             hcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            34567788888888888887      6667777888888888888888888888888776554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.30  E-value=6.7  Score=37.20  Aligned_cols=118  Identities=17%  Similarity=0.035  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      ..++...+.+.+..+|.                +..+...--..++.+|+.+.....+++.+..-  ..|-+..++..-.
T Consensus       119 ~h~a~~~wdklL~d~Pt----------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gm  180 (491)
T KOG2610|consen  119 HHEAAIEWDKLLDDYPT----------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGM  180 (491)
T ss_pred             ccHHHHHHHHHHHhCch----------------hhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHH
Confidence            34555667777777776                77777777888899999999999988865521  3455566777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      ++..+...|-|++|.+..++++++      ++....+...++.+..-.|+++++.++..+.-
T Consensus       181 yaFgL~E~g~y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  181 YAFGLEECGIYDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             HHhhHHHhccchhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            888899999999999999999999      88889999999999999999999999987753

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=90.22  E-value=1.3  Score=48.12  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CC
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GE  284 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d  284 (322)
                      +..+..++.+++..+++++|+..-.++.-+.++.  .|.......+.+++...+..+....|...+.++..+..=.  .+
T Consensus       973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen  973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence            3455678999999999999999999988877764  5777788899999999999999999999998887654332  35


Q ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          285 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .|..+....+++.++...++++.|+++.+.|+++.+
T Consensus      1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred             CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            777788889999999999999999999999988543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.21  E-value=13  Score=36.26  Aligned_cols=124  Identities=13%  Similarity=0.091  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHH--HHHHHHHHHHHHcCCHHHHHHH
Q 020735          154 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEEL--LSRLKTGKNFLRNQDLEKAFTE  231 (322)
Q Consensus       154 ~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a--~~~~~la~~y~~~g~~~~Al~~  231 (322)
                      +....+.........-+.+..+..+...|+.++++..++..+.+.......+-...  ...-.+..+|...++.+-|+..
T Consensus       171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh  250 (569)
T PF15015_consen  171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNH  250 (569)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHH
Confidence            33444443333455556666788888899999998877644443211111111112  2334689999999999999999


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      ..+.+-+.|.      ...-+..-+.++..+.+|.+|-..+..+.-+.--.+
T Consensus       251 ~hrsI~lnP~------~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g  296 (569)
T PF15015_consen  251 SHRSINLNPS------YFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG  296 (569)
T ss_pred             HhhhhhcCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999998887      666677788899999999999999888876654444

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.19  E-value=8.6  Score=35.70  Aligned_cols=106  Identities=7%  Similarity=-0.063  Sum_probs=84.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA  291 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a  291 (322)
                      ..+...++..|.|.+|+......+.-.++..|+......+..-+.+|....+..++...+..|-..+...-.+|. .+..
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l  208 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL  208 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence            356888999999999999999999888899999888877877888999999999998888877766665555553 2333


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      -..-|..+..-.||..|-.||-++++=
T Consensus       209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         209 DLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             HHhccceeeccccchhHHHHHHHHHhc
Confidence            333477888889999999999888763

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.14  E-value=0.4  Score=27.26  Aligned_cols=23  Identities=30%  Similarity=0.251  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHS  273 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~  273 (322)
                      +.+++|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45667777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.10  E-value=19  Score=34.89  Aligned_cols=97  Identities=26%  Similarity=0.233  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...++--+..-...|+|+.|-.-|+..+.      |+.....-+.+|=.--.+.|+++.|+.|-+.+-+.      -+..
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l  187 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK------APQL  187 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCC
Confidence            34455567888889999999999887655      22224444555556667899999999999999888      5666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ..+....=......|||+.|++..+...+
T Consensus       188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         188 PWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             chHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            66766666677889999999999877654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.10  E-value=13  Score=35.71  Aligned_cols=102  Identities=16%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~---~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...++=..|....+|+.-+...+..-.+ |... ...........|.++.+   .|+.++|+..+..++.-     +...
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~  215 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-----DENP  215 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCC
Confidence            4455667788889999888877764443 2111 22244455666777777   89999999999997544     2445


Q ss_pred             HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTEL---------GDLERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~---------gd~e~A~~~~~kAl~i~  319 (322)
                      .++.+..+|.+|..+         ...++|+.+|.++.++-
T Consensus       216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            677888889988653         24678888888887654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.01  E-value=0.85  Score=41.26  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735          228 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  301 (322)
Q Consensus       228 Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~  301 (322)
                      |..+|.+|..+.|.      .+..++.||.++...|+.-+|+-+|-+++-.      ......+..||...+.+
T Consensus         1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV------RIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------SB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHH
Confidence            67899999999999      7888999999999999999999999999865      44457788898888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.01  E-value=8.3  Score=35.15  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCCCchHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~-eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      .++.-+..+.+.+++.-|.+...-.++.+.+.+.... .....++..+....+.-+ +-.++.+++++.++..+...+.+
T Consensus        12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~-~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp   90 (260)
T PF04190_consen   12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD-EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP   90 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence            4455677788888999888877666666665443332 223456777777665443 46777788999995455566788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          290 EAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      ..+..+|..|.+.|++.+|..+|-
T Consensus        91 ~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   91 ELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH
Confidence            999999999999999999998874

; PDB: 3LKU_E 2WPV_G.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=90.00  E-value=4.2  Score=32.77  Aligned_cols=67  Identities=16%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---------~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +..+|....+.+++-.|+-+|++|+.+.++.....         -......|||..+...||.+-.++|++-|-+.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~   79 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK   79 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence            45677888888888888888888888888763111         12335778999999999999999988877553

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=89.73  E-value=17  Score=33.87  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ..-..+...+++.|.|.+|+......+.-.++.+|.+.....+..=..+|.+..+..++...+..|-.
T Consensus       126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt  193 (421)
T COG5159         126 ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART  193 (421)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence            33457788899999999999999999999999999999888888889999999988888776665543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.50  E-value=0.56  Score=41.92  Aligned_cols=55  Identities=25%  Similarity=0.270  Sum_probs=50.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .....++.+.|.+.|.++++++++      ....+..+|...-+.|+.+.|...|++++++
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            345678999999999999999998      8888999999999999999999999999998

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.39  E-value=10  Score=32.63  Aligned_cols=95  Identities=12%  Similarity=0.106  Sum_probs=61.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------
Q 020735          219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------------------  280 (322)
Q Consensus       219 y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~------------------  280 (322)
                      .-..+..++|+..|...    ++.+-..+...+....+.+....|+..+|+.+|..+-.-..                  
T Consensus        68 lA~~~k~d~Alaaf~~l----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv  143 (221)
T COG4649          68 LAQENKTDDALAAFTDL----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV  143 (221)
T ss_pred             HHHcCCchHHHHHHHHH----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence            33445556665555432    12233344556677888888999999999998886432100                  


Q ss_pred             -------------H--cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          281 -------------R--EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       281 -------------~--~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                                   .  .+.++....+...||..-.+.||+.+|..+|++...
T Consensus       144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence                         0  112333445666799999999999999999987653

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.35  E-value=11  Score=36.60  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCCCc
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER----EGEYS  286 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~----~~d~~  286 (322)
                      ++..+|..|..-|+++.|++.|-++.+.+-.   .......+.++=.+-.-.|+|..-..+-.+|......    ...-+
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            6677999999999999999999997776654   2234556667777777889999888888888766311    11122


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                        +.....-|.+...+++|+.|.+++-.+
T Consensus       229 --~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  229 --AKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             --cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence              223444566666777999999988654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.24  E-value=9.5  Score=37.50  Aligned_cols=52  Identities=27%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          256 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       256 G~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      +..++.+|+|.++.-+-.-..++      .| .+.+|..+|.|.....+|++|.+++.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~i------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKI------AP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHh------CC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            34466889999999998888888      66 688999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.84  E-value=16  Score=35.29  Aligned_cols=107  Identities=13%  Similarity=0.045  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-------  281 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-------  281 (322)
                      ......+...+..++|..|...+......   +.+.. +......-.|.-++..-++.+|.+++++.+.....       
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~  208 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREG  208 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHH
Confidence            35566788889999999999999998774   22222 22333334566778899999999999977653211       


Q ss_pred             --------------------cCC---Cch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          282 --------------------EGE---YSG--STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       282 --------------------~~d---~~~--~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                                          ...   ++.  ...-++.-|.--...|+|+.|...+=+++++.
T Consensus       209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~  271 (379)
T PF09670_consen  209 LKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL  271 (379)
T ss_pred             HHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence                                000   001  11112223333456888999999999988865

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.83  E-value=9.9  Score=35.33  Aligned_cols=88  Identities=17%  Similarity=0.080  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHh---------------------------CCChHHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQN---------------------------VKDPIEEKKAARGLGASLQR  261 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~---------------------------~~d~~~~~~a~~~LG~~~~~  261 (322)
                      ...+..+......|+..+|+..++..+. ....                           ..+....+.++..+|.....
T Consensus       185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~  264 (352)
T PF02259_consen  185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE  264 (352)
T ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence            3556678889999999999998888777 2211                           11234466788888988888


Q ss_pred             c------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          262 Q------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       262 ~------gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      .      ++.++++..|++++++      .+....+++.+|..+...-
T Consensus       265 ~~~~~~~~~~~~~~~~~~~a~~~------~~~~~k~~~~~a~~~~~~~  306 (352)
T PF02259_consen  265 LYSKLSSESSDEILKYYKEATKL------DPSWEKAWHSWALFNDKLL  306 (352)
T ss_pred             hccccccccHHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHH
Confidence            8      9999999999999999      7777788888888877653

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK10941 hypothetical protein; Provisional

Probab=88.66  E-value=5.3  Score=36.71  Aligned_cols=67  Identities=12%  Similarity=0.046  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      -.....++-.+|...++++.|+...+..+.+.|+      .+.-+.-.|.+|.+.|.+..|..-++..++.++
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            3445667889999999999999999999999998      777788899999999999999999999988843

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.63  E-value=4.7  Score=33.60  Aligned_cols=84  Identities=24%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+......-....+.+++........-+.|+      ....-.--|.++...|+|.+|+..++...+-      .+..+.
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~   79 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPY   79 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchH
Confidence            4444555555688999998888888888888      5666667789999999999999999986544      444466


Q ss_pred             HHHHHHHHHHHcCCHH
Q 020735          291 AYGAIADCYTELGDLE  306 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e  306 (322)
                      +.-.++.|...+||.+
T Consensus        80 ~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        80 GKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHHHHHHhcCChH
Confidence            6677888999998875

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=88.16  E-value=2.2  Score=42.56  Aligned_cols=97  Identities=14%  Similarity=0.102  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~---gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...-|+-.+..+....|+..|.+++...+.      ....+.+.+.++.+.   |+.-.|+.-...|+++      ++..
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~  444 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSI  444 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHH
Confidence            333444444555677888888888887776      666677777777654   5666677777888888      8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+++.|+.+...++++.+|+.........++
T Consensus       445 ~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  445 QKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            89999999999999999999988766554443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.09  E-value=15  Score=33.49  Aligned_cols=93  Identities=19%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQ-------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQ  277 (322)
Q Consensus       209 a~~~~~la~~y~~~g-------~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~  277 (322)
                      ..+.+.+|..|..-.       +...|...|.++-...        ...+.+.+|..|..    ..++.+|+.+|.++-+
T Consensus       148 ~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~  219 (292)
T COG0790         148 ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE  219 (292)
T ss_pred             HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence            344677777776542       2236777777766644        46678889988765    4589999999999876


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 020735          278 ISEREGEYSGSTEAYGAIADCYTELG---------------DLERAARFYDKYISR  318 (322)
Q Consensus       278 l~~~~~d~~~~a~a~~~Lg~~y~~~g---------------d~e~A~~~~~kAl~i  318 (322)
                      .      ..  ..+.++++ ++...|               +...|..++.++-..
T Consensus       220 ~------g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         220 Q------GD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             C------CC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence            5      32  67788888 666566               888888888877543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.07  E-value=7.1  Score=36.05  Aligned_cols=65  Identities=20%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ...++..+...+...|+++.+++.+++-+++      +|..-.+|..+-..|...|+...|+..|++.-+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567888888999999999999999998888      7888888888889999999999999998887654

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.87  E-value=4.2  Score=40.55  Aligned_cols=80  Identities=21%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-SEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYIS  317 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l-~~~~~d~~~~a~a~~~Lg~~y~~~gd-~e~A~~~~~kAl~  317 (322)
                      +...|.....--+.-+|.++..+|+...|..+|..+++- .....+.+..+.++|.+|..|..+|. ..+|..++.+|-+
T Consensus       440 ~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~  519 (546)
T KOG3783|consen  440 PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE  519 (546)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence            344455555556778899999999999999999988743 34456677789999999999999999 9999999999876


Q ss_pred             hh
Q 020735          318 RL  319 (322)
Q Consensus       318 i~  319 (322)
                      ..
T Consensus       520 ~~  521 (546)
T KOG3783|consen  520 YA  521 (546)
T ss_pred             hc
Confidence            55

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.49  E-value=24  Score=37.47  Aligned_cols=96  Identities=15%  Similarity=0.041  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+...--.|.+....|++++|+++-+.++...+...... ...++..+|.+..-+|++++|..+..++.+++++.+....
T Consensus       457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l  535 (894)
T COG2909         457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL  535 (894)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH
Confidence            334444468888899999999999999999777633322 3557889999999999999999999999999998887777


Q ss_pred             HHHHHHHHHHHHHHcCC
Q 020735          288 STEAYGAIADCYTELGD  304 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd  304 (322)
                      ...+.+..+.+...+|+
T Consensus       536 ~~~~~~~~s~il~~qGq  552 (894)
T COG2909         536 ALWSLLQQSEILEAQGQ  552 (894)
T ss_pred             HHHHHHHHHHHHHHhhH
Confidence            78888888999999994

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.36  E-value=29  Score=35.69  Aligned_cols=103  Identities=13%  Similarity=0.067  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +.++....+...++..+++-|..++.+.+.          -..+..-+.....++.+|....+.|+|.+++++|-+..++
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----------D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~  426 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----------DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ  426 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccc----------hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            334444555555667777778888877654          1112223556778999999999999999999999988876


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                            .......+--+...-+.-++|+....+......
T Consensus       427 ------~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  427 ------SPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ------cHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence                  455555556667777889999988877665433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=87.05  E-value=8.2  Score=31.73  Aligned_cols=67  Identities=15%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~---~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ...+.+++|.+.....+   ..+.+..+++.++    ...+...-..+|.|+..+++.++|++|+.|.+..++.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            34467777777776544   4455666666554    1223335566888999999999999999999998877

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.53  E-value=1.9  Score=40.25  Aligned_cols=62  Identities=11%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+.+.-.++.|+.++|...|+-|+++      .|..++++...|......++.-+|-.+|-+|+.+.+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            34444567789999999999999999      888999999999999999999999999999987653

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.39  E-value=22  Score=31.18  Aligned_cols=87  Identities=15%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 020735          217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  296 (322)
Q Consensus       217 ~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg  296 (322)
                      .-+..+-.-++|...|.++-. .+.+    ..+...+.||..|. ..|.++|+..+.+++++....+  ..+++.+..|+
T Consensus       114 Yy~Wsr~~d~~A~~~fL~~E~-~~~l----~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLa  185 (203)
T PF11207_consen  114 YYHWSRFGDQEALRRFLQLEG-TPEL----ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--NFNPEILKSLA  185 (203)
T ss_pred             HHHhhccCcHHHHHHHHHHcC-CCCC----CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHH
Confidence            334445455677666654221 2222    24556777875554 7899999999999999966432  34578899999


Q ss_pred             HHHHHcCCHHHHHHH
Q 020735          297 DCYTELGDLERAARF  311 (322)
Q Consensus       297 ~~y~~~gd~e~A~~~  311 (322)
                      -+|..+|++++|--+
T Consensus       186 s~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  186 SIYQKLKNYEQAYIW  200 (203)
T ss_pred             HHHHHhcchhhhhhh
Confidence            999999999998543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=86.00  E-value=15  Score=37.77  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH-----------------------------HHHHH------
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-----------------------------EEKKA------  251 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~-----------------------------~~~~a------  251 (322)
                      +-...+..+|..|.+.|.+++|.+.|++++...-...|-.                             .....      
T Consensus       246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~  325 (835)
T KOG2047|consen  246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR  325 (835)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence            3455677899999999999999999988877432211110                             00000      


Q ss_pred             ---HH---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735          252 ---AR---------------------GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  307 (322)
Q Consensus       252 ---~~---------------------~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~  307 (322)
                         +.                     ++-.+-...|++.+-+..|.+|+....-..-.-.....+..+|..|...|+.+.
T Consensus       326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence               00                     111222233667777888887765432211122345678889999999999999


Q ss_pred             HHHHHHHHHH
Q 020735          308 AARFYDKYIS  317 (322)
Q Consensus       308 A~~~~~kAl~  317 (322)
                      |...|++|..
T Consensus       406 aRvifeka~~  415 (835)
T KOG2047|consen  406 ARVIFEKATK  415 (835)
T ss_pred             HHHHHHHhhc
Confidence            9999999875

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.78  E-value=4.6  Score=37.46  Aligned_cols=63  Identities=25%  Similarity=0.345  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +...+..|...|.+.+|+++.++++.+      +|.....+..+-.++...||--.|.+.|++.-+..+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vle  344 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE  344 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence            444566788999999999999999999      888888899999999999999999999998876554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=85.58  E-value=10  Score=40.94  Aligned_cols=95  Identities=19%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      .+++|+..|++.-...|.             +.+..++.+.+|.....+.+-..--+.|.+|+...+.+.+....+.-|.
T Consensus       490 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (932)
T PRK13184        490 LYDQALIFYRRIRESFPG-------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL  556 (932)
T ss_pred             HHHHHHHHHHHHhhcCCC-------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence            445566666665554443             2224457777888777543333323567777777777766666677788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      +-+.+|+++|+|+|-+++|.-|++...+
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        557 GKALVYQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999987554

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=85.16  E-value=23  Score=33.68  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=78.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735          222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  301 (322)
Q Consensus       222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~  301 (322)
                      .+..+.-++...+.++.+.+.+-.......-..|...|+..++|.+|+......+.-.++.+|.....+.+..=..+|..
T Consensus       101 ~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~  180 (411)
T KOG1463|consen  101 DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHA  180 (411)
T ss_pred             CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHH
Confidence            34555667777888888877555555555667888999999999999999999999999999999988888888999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 020735          302 LGDLERAARFYDKYI  316 (322)
Q Consensus       302 ~gd~e~A~~~~~kAl  316 (322)
                      +.+..+|...+..|-
T Consensus       181 l~Nl~KakasLTsAR  195 (411)
T KOG1463|consen  181 LRNLPKAKASLTSAR  195 (411)
T ss_pred             HhcchhHHHHHHHHH
Confidence            999999988776654

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=84.48  E-value=12  Score=34.76  Aligned_cols=80  Identities=9%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      .-++-++.+.+.++-.+..+...+...++.|+|..|.+.+|-+.+.+++.+.++-+-..+-..+...+...+|.+|..+.
T Consensus        90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~  169 (412)
T COG5187          90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK  169 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence            34555667777777666666677788999999999999999999999999988776666655555556666777665543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.27  E-value=4.9  Score=30.37  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHH
Q 020735          229 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  308 (322)
Q Consensus       229 l~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A  308 (322)
                      +..+++.++..|.      ...+.+.++..+...|++++|++.+-..++.....++    ..+--.+=.++..+|.-+--
T Consensus         8 ~~al~~~~a~~P~------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~----~~ar~~ll~~f~~lg~~~pl   77 (90)
T PF14561_consen    8 IAALEAALAANPD------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYED----DAARKRLLDIFELLGPGDPL   77 (90)
T ss_dssp             HHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC----CHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc----cHHHHHHHHHHHHcCCCChH
Confidence            4556677776676      7788889999999999999999998888766433222    23334445555666654433


Q ss_pred             HHHHHH
Q 020735          309 ARFYDK  314 (322)
Q Consensus       309 ~~~~~k  314 (322)
                      ..-|++
T Consensus        78 v~~~RR   83 (90)
T PF14561_consen   78 VSEYRR   83 (90)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=84.04  E-value=9.8  Score=31.30  Aligned_cols=68  Identities=18%  Similarity=0.165  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          248 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~g---d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ...+.+++++++....   |.++.+..++..++    ...+...-++.|.|+..+..+++|++|+.|.+..++.-
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            3456778888877654   45567777777665    11233456789999999999999999999999888754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=83.47  E-value=9.9  Score=36.59  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHH---H--cCCCchHHHHHHHHH
Q 020735          223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL-QISE---R--EGEYSGSTEAYGAIA  296 (322)
Q Consensus       223 g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL-~l~~---~--~~d~~~~a~a~~~Lg  296 (322)
                      ...++|+..|.++.++.+       ..+.-.|++..+...|...+.....++.. .+..   +  ..+.....+.+-.++
T Consensus       240 ~~ldkAi~~Y~kgFe~~~-------~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~  312 (374)
T PF13281_consen  240 ESLDKAIEWYRKGFEIEP-------DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLL  312 (374)
T ss_pred             HHHHHHHHHHHHHHcCCc-------cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence            348899999999988775       34556677777777777555444343332 2221   1  122333445566788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          297 DCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       297 ~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+....||+++|.++++++++...
T Consensus       313 Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  313 EASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             HHHHHcCCHHHHHHHHHHHhhcCC
Confidence            889999999999999999987643

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=82.76  E-value=27  Score=34.04  Aligned_cols=106  Identities=16%  Similarity=0.009  Sum_probs=79.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc---
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE---  282 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~-------~eAi~~~~kaL~l~~~~---  282 (322)
                      -.+|..++..+||+-|...|+.+.+-...-+-....+.++-..|.+....+..       ++...+++.|+......   
T Consensus       212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~  291 (414)
T PF12739_consen  212 RRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALP  291 (414)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence            45899999999999999999998886655444455667777888888877754       36777788877776662   


Q ss_pred             --CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          283 --GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       283 --~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                        ........+....+.++...+.+.+|...+-+....
T Consensus       292 ~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  292 RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence              122345567778889999999998888877666543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=82.76  E-value=5.9  Score=34.40  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             HHHHcCCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          218 NFLRNQDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQ-----RQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       218 ~y~~~g~~~~Al~-~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~-----~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      .+..+|+|-+++. -|++|..+.+...|....+.+.+.+|.-+.     ..+++..|+++|+.+-+        ...+.+
T Consensus        36 ~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~a  107 (248)
T KOG4014|consen   36 SCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQA  107 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHH
Confidence            3445567777766 478888888888888778888888887665     34678999999998754        334667


Q ss_pred             HHHHHHHHHHcC-----C--HHHHHHHHHHHHH
Q 020735          292 YGAIADCYTELG-----D--LERAARFYDKYIS  317 (322)
Q Consensus       292 ~~~Lg~~y~~~g-----d--~e~A~~~~~kAl~  317 (322)
                      ..++|.+...-.     |  .++|.+|+.++-+
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd  140 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACD  140 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence            777888776432     3  6788999888754

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=82.20  E-value=17  Score=27.44  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             HHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 020735          179 IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS  258 (322)
Q Consensus       179 l~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~  258 (322)
                      ++.+++.+...|.                +..+.+.+|..+...|++++|++.+.+.+...+..++.....    .+=.+
T Consensus         8 ~~al~~~~a~~P~----------------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~----~ll~~   67 (90)
T PF14561_consen    8 IAALEAALAANPD----------------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK----RLLDI   67 (90)
T ss_dssp             HHHHHHHHHHSTT-----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH----HHHHH
T ss_pred             HHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH----HHHHH
Confidence            4456666666666                778899999999999999999999999999887765543322    22234


Q ss_pred             HHHcCCHHHHHHHHHH
Q 020735          259 LQRQGKYREAIKYHSM  274 (322)
Q Consensus       259 ~~~~gd~~eAi~~~~k  274 (322)
                      +...|.-+.-...|++
T Consensus        68 f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen   68 FELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HHHH-TT-HHHHHHHH
T ss_pred             HHHcCCCChHHHHHHH
Confidence            4444554444444443

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=81.49  E-value=15  Score=37.12  Aligned_cols=70  Identities=17%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735          223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  293 (322)
Q Consensus       223 g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~  293 (322)
                      ..-+.+++.|++|+..++..-+. ...+-|..+|..+++.++|.+|+.++-++-......+......++|-
T Consensus       293 ~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYK  362 (618)
T PF05053_consen  293 PGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYK  362 (618)
T ss_dssp             TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHH
Confidence            34567788999999988764331 23445777888899999999999999988777666554444444443

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=81.15  E-value=0.86  Score=43.04  Aligned_cols=104  Identities=15%  Similarity=0.090  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCh-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDP-----------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~-----------~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .-..|...+..++|+.|..-|.+++......  .+.           ........+++.+-...+.+..|+.....+++.
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            3346788999999999999999888765421  011           111234667888899999999999988888773


Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                            .+..+.+++..+..|..+.++++|.+.++.+....++
T Consensus       305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~  341 (372)
T KOG0546|consen  305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN  341 (372)
T ss_pred             ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence                  6777889999999999999999999999998765543

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.00  E-value=3.5  Score=30.51  Aligned_cols=25  Identities=36%  Similarity=0.312  Sum_probs=13.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          295 IADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       295 Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .|..+.+.|+.++|+.+|+++++.+
T Consensus        14 kaL~~dE~g~~e~Al~~Y~~gi~~l   38 (79)
T cd02679          14 KALRADEWGDKEQALAHYRKGLREL   38 (79)
T ss_pred             HHhhhhhcCCHHHHHHHHHHHHHHH
Confidence            3444444555555555555555544

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.82  E-value=3.2  Score=27.03  Aligned_cols=25  Identities=36%  Similarity=0.579  Sum_probs=17.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          293 GAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      +.||..|...||++.|.+..++.++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4577777777777777777777663

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.52  E-value=53  Score=31.06  Aligned_cols=106  Identities=14%  Similarity=-0.006  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCC
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL-QISEREGEY  285 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~-l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL-~l~~~~~d~  285 (322)
                      -+.....+|.+|-..+++..|...+...=. -.+...|.......+..+|..|...+|..+|..+-.++= -.+.. .++
T Consensus       102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-~Ne  180 (399)
T KOG1497|consen  102 VASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-SNE  180 (399)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-cCH
Confidence            445667788888888887777665432111 001112223344456777888888888888877776652 22222 111


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      ......-..-|.+....++|-+|...|.+
T Consensus       181 ~Lqie~kvc~ARvlD~krkFlEAAqrYye  209 (399)
T KOG1497|consen  181 QLQIEYKVCYARVLDYKRKFLEAAQRYYE  209 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222222235556666666666655544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=80.48  E-value=11  Score=34.71  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHcCCCc
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGEYS  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~-l~~~~~d~~  286 (322)
                      .+.++..++..+...++++.+.+.+++.+.+.|-      .-.++..+=..|...|+...|+..|++.-. ..+..+-.|
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P  225 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence            4557778899999999999999999999998887      677788888999999999999999999876 444444444

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.42  E-value=15  Score=33.99  Aligned_cols=131  Identities=8%  Similarity=0.053  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      ..++++..|++.+...+.   .+++         ...++-.+-.+++++++|++-.+.|.+.+...+..--..+...+.+
T Consensus        42 ~p~~Al~sF~kVlelEgE---KgeW---------GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN  109 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGE---KGEW---------GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN  109 (440)
T ss_pred             CHHHHHHHHHHHHhcccc---cchh---------HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            457788899999987654   1111         2335556678899999999999999988876553100000011111


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      .+-..-....+.+--.++|+..+...+...+.......-..||.+|...++|.+-.+..++..
T Consensus       110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh  172 (440)
T KOG1464|consen  110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH  172 (440)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence            111111122233333455555555544433333333344568888888888877666555443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=80.12  E-value=6.9  Score=24.20  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHS  273 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~  273 (322)
                      .++++|..++.+|+|++|++.|.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~   25 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQ   25 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHH
Confidence            46677888888888888888843

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=80.06  E-value=18  Score=37.20  Aligned_cols=99  Identities=12%  Similarity=0.049  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      ..+-|+.+-...-+++|...|++.+.+.+-- ........|.---...+.....+.|...|++|++.+     +|..+..
T Consensus       514 i~NyAmfLEeh~yfeesFk~YErgI~LFk~p-~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-----pp~~aKt  587 (835)
T KOG2047|consen  514 IINYAMFLEEHKYFEESFKAYERGISLFKWP-NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-----PPEHAKT  587 (835)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHcCCccCCCc-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----CHHHHHH
Confidence            3445666666666778888888877776531 111122223223333444556778888888888763     2333332


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          292 -YGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       292 -~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                       |..-|..-.+.|--..|+..|++|-
T Consensus       588 iyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  588 IYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             3334666666666667777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		2e-04
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		5e-04
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		5e-04
3ro3_A	164	Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length		5e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 202 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 261
           +DP+  E    L  G  + +  D ++A   ++ ALEL     DP    +A   LG +  +
Sbjct: 30  LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 81
Query: 262 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           QG Y EAI+Y+   L++  R      S EA+  + + Y + GD + A  +Y K
Sbjct: 82  QGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  + +  D ++A   ++ ALEL  N        +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L++      Y  + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  + +  D ++A   ++ ALEL     DP    +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 232 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 291
Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 292 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 332

>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 263
            K  E ++    G  ++   + E A   +K  L LA+ +KD   E ++   LG +     
Sbjct: 44  DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 264 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
            Y +AI YH   L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-10
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	7e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	8e-07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	6e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	8e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-04

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 71.0 bits (174), Expect = 5e-14
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
             NFL  +  E A + F+ A  +A+  K P    +    +G     Q +Y +AI Y    
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           + + E         +AY  I   + +LG +++A  ++ K
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G   L  ++   A   FK A      VKD IE+ +    +  S     +   ++ Y    
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169

Query: 276 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDK 314
            +I +    Y+    + +   A  + +L   E A   + K
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 280
               +    + A E+ +  +      +  +       +     +Y +AI +      ++E
Sbjct: 158 QTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215

Query: 281 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            E +          I  C       E A  ++ + I+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G         E A   FK A+ + +         +A   +     + GK  +A +YHS  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
           +  S++ G+       Y +  +    L            +   LE
Sbjct: 291 MAYSQKAGD-----VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
            ++KA       +  +Q   D I   +       SL   G   EAI+         E + 
Sbjct: 279 KIDKAHEYHSKGMAYSQKAGDVIYLSEFE--FLKSLYLSGPDEEAIQGF---FDFLESKM 333

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
            Y+   +    +A  Y E  + ++A+ ++ K  
Sbjct: 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 10/91 (10%), Positives = 28/91 (30%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + +   ++    ++  Q     + E       G     Q +Y  AIK+            
Sbjct: 78  EEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK 137

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +     E +  +++ Y  +     +  +  +
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 264
                LS  +  K+   +   E+A   F   LE      D    +  A  +      +  
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD---LEDFAIDVAKYYHERKN 354

Query: 265 YREAIKYHSMVLQISER 281
           +++A  Y   V Q+ + 
Sbjct: 355 FQKASAYFLKVEQVRQL 371

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 64  EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 66.0 bits (162), Expect = 2e-13
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           +   A    +  L +A+   D   E+ A   LG +    G++  A +Y+   L ++ +  
Sbjct: 24  NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 84  DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           LG +    G +R+A+  H   L I++  G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   G
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D + A    +  L +A+   D   E++A   LG S    G++ +A +++   L ++   G
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           E     ++  ++ + YT L +   A  ++++
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 22/93 (23%), Positives = 45/93 (48%)

Query: 222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281
            + L +A   ++  L+L +++ D   + +A   LG +    G ++ AI++H   L+I+  
Sbjct: 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255

Query: 282 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            G+ +    A   + + +  LG  E AA  Y +
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D       F+AA++     +D          LG +    G Y +A++YH   L +++   
Sbjct: 63  DCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +  G  ++ G + +    +G  + AA   ++
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 22/93 (23%), Positives = 47/93 (50%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
             E A   +K  L LA  + +   E ++   LG +     ++  AI+YH+  L I++  G
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           +  G   A  ++ + ++ +G  ERA ++ ++++
Sbjct: 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 22/98 (22%), Positives = 39/98 (39%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D  KA    K  L LA+++ D + E K++  LG +L+  G++ EA       L ++ + G
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321
           +      A   + + Y   G                E+
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 2/105 (1%)

Query: 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 269
           LS      + L                +                  G  L   G  R  +
Sbjct: 9   LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 270 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            +    +Q      +    +  Y  + + Y  LGD  +A +++  
Sbjct: 69  AFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------- 265
           N L+     ++A    +  L LA+ + D + E +A   LG     +GK+           
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 266 ------REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                   A++++   L++    G+      A G + + Y  LGD + A   + +
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 11/72 (15%), Positives = 14/72 (19%)

Query: 251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 310
           +A     S    G        H    Q        S          +     GD      
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 311 FYDKYISRLESD 322
           F+   I     D
Sbjct: 70  FFQAAIQAGTED 81

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 279
            +   A       L +AQ + D I E +A   LG +    G +  A+KY    LQ++
Sbjct: 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 18/105 (17%), Positives = 32/105 (30%)

Query: 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 272
           L      +   DL KA   ++ A  + +N +   +  +        L RQ K+ EA    
Sbjct: 119 LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178

Query: 273 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                + +    Y    +   A         D   A +   +  S
Sbjct: 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
              F   + LE+A   +    E   N +      KA    G  L+   +  EA++Y    
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
             +    G    +  A         E  DL +A   Y +  +  E++
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENE 148

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 5/63 (7%), Positives = 19/63 (30%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
              + +   +  +A   +    +          + +A+        +L  +  A ++ +K
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 315 YIS 317
              
Sbjct: 102 ASV 104

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 279
           +R Q  ++A    +    + + +++     K           +  Y  A K       I 
Sbjct: 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

Query: 280 EREGEYSGSTEA--YGAIADCYTELGDLERAARFY-DKYISRLESD 322
                +SGS +      +   Y E  D E+  R      ++ +++D
Sbjct: 226 ----GFSGSEDCAALEDLLQAYDE-QDEEQLLRVCRSPLVTYMDND 266

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 14/88 (15%), Positives = 31/88 (35%)

Query: 227 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 286
           +A     A  +    +  P     A   LG       ++ EA      + Q +++ G+++
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 287 GSTEAYGAIADCYTELGDLERAARFYDK 314
               A   +       G+ + A R + +
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLE 91

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
             ++A   F+A  + AQ   D   E +A   +G   +  G +  A +      ++     
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 284 E-YSGSTEAYGAIADCYTELGDLERAARFYDK 314
           E    ++     +A      GDL  A + Y+K
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEK 132

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 224 DLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           + + A   F    EL  ++ +DP+     A  +       G    A + +   L  +++ 
Sbjct: 81  NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            +      A+  + D   +  +L  A + + +
Sbjct: 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 18/81 (22%), Positives = 28/81 (34%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           DL  A  E++ +L  AQ   D +    A RGLG   Q++    EA ++      I     
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181

Query: 284 EYSGSTEAYGAIADCYTELGD 304
           +     E    +         
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           QD EKA       L +AQ + D I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
           G+ SG   A   ++D    LG             + ++
Sbjct: 341 GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G+   ++ D     + F+AA+++    +D          LG +      Y +A++YH   
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L ++   G+  G  +A G + +    LG+ + A     +
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 26/98 (26%), Positives = 36/98 (36%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 62  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321
           +  G   A   + + Y   G         D      E 
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 21/118 (17%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------ 264
           N L+   + ++A    +  L++++ + D + E +A   LG     +GK            
Sbjct: 95  NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 265 --------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                    + A+ ++   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D     + F+AA+++    +D          LG +      Y +A++YH   L ++   G
Sbjct: 20  DCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +  G  +A G + +    LG+ + A     +
Sbjct: 78  DQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 25/91 (27%), Positives = 35/91 (38%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 58  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +  G   A   + + Y   G         D 
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 264
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 98  NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157

Query: 265 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
             + A+  +   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           QD EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

Query: 283 GE 284
           G+
Sbjct: 337 GD 338

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G      ++  +A   ++ A +    V D IE+ +    +  +     +   ++ +    
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167

Query: 276 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYI 316
           L I +    YS  T ++   IA  Y +    ++A    +  +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
             N+   +  +KA    +AALELA ++++      +   +  S  R G  + A+++    
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
            ++S  +       +    ++    + G  ++A +F ++ +  + 
Sbjct: 249 AKVSREKVPDLLP-KVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 280
               +      AL++ Q    P+   +  +    +  +      Y +A+ +    L+++ 
Sbjct: 156 QTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213

Query: 281 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                     +   IA+ Y   GD + A   + K   
Sbjct: 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA--RGLGASLQRQGKYREAIKYHS 273
                +    +KAF   +  L+          ++     + +      + K  + + Y  
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF- 326

Query: 274 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
                 E++  ++       + A  +      E+AA FY K +
Sbjct: 327 ------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 14/97 (14%), Positives = 29/97 (29%)

Query: 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 277
              +        TE    +E  Q     + +  +    G     Q +Y EAI Y+    +
Sbjct: 70  EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129

Query: 278 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                 +     E +  +A+ Y  +     +     +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
             ++ R+ D + A   F+ A ++++         K   GL  +L + G+ ++A ++    
Sbjct: 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
           L             + Y  +      +       R     +S  E
Sbjct: 288 LDHITARSH-----KFYKELFLFLQAVYKETVDERKIHDLLSYFE 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 62/366 (16%), Positives = 110/366 (30%), Gaps = 111/366 (30%)

Query: 34  KLASLLHKLEKFASSFTNASSS---------SRARHL----RFGRCL----ESEGSRGIG 76
            L  LL++++   +S ++ SS+         +  R L     +  CL      + ++   
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 77  KMQQLCDILL--------EGLPAHQQGKVQLRSTTTTFLVVNTL-----MLTTPFKALAE 123
                C ILL        + L A     + L   + T             L    + L  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 124 TCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVN-EQLRQINAALRRQAKIESY 182
             E   +    P  L  ++I  ++   LA       + VN ++L  I      ++ +   
Sbjct: 321 --EVLTT---NPRRL--SIIAESIRDGLATWDN--WKHVNCDKLTTI-----IESSLNVL 366

Query: 183 AP--------SLSYAPVGSRIPEDEVIV----DPKKEELLSRLKTGKNFLRNQDL-EKAF 229
            P         LS  P  + IP   ++     D  K +++  +    N L    L EK  
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVV----NKLHKYSLVEKQP 421

Query: 230 TEFKAAL-ELAQNVKDPIEEKKAARGLGASLQRQ--GKYREA------------------ 268
            E   ++  +   +K  +E + A       L R     Y                     
Sbjct: 422 KESTISIPSIYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 269 --IKYHSMVLQISEREGEYS--------------GSTEAYGAIADCYTELGDLERAARFY 312
             I +H   ++  ER   +                 + A+ A       L  L    +FY
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL----KFY 530

Query: 313 DKYISR 318
             YI  
Sbjct: 531 KPYICD 536

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 202 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 261
           +     E L  L  G N  +    + A   F+A   L     D   + +   GLGA  Q 
Sbjct: 13  LSEDTLEQLYAL--GFNQYQAGKWDDAQKIFQALCML-----DH-YDARYFLGLGACRQS 64

Query: 262 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321
            G Y +A++ +S    +                 A+C+ +LGDL+ A   +    +   +
Sbjct: 65  LGLYEQALQSYSYGALMD------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 322 D 322
            
Sbjct: 119 Q 119

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASL 259
            P+   ++  +  G    +N + + A   F  ALE  + + + +   K       LG   
Sbjct: 189 APEDPFVMHEV--GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246

Query: 260 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++  KY EA+ YH   L +  +          Y AI   ++ +G+ E A  ++   + 
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNA------STYSAIGYIHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G +F    + ++A   +  A +L +    P+        +G         + A ++ S  
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPM------LYIGLEYGLTNNSKLAERFFSQA 185

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
           L I+               +     + G+ + A +++   + ++++ 
Sbjct: 186 LSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%)

Query: 179 IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 238
            + +  +L              +   K E LL+ L  G    + +   +A    + AL L
Sbjct: 213 EKWFLDALEKIK-----AIGNEVTVDKWEPLLNNL--GHVCRKLKKYAEALDYHRQALVL 265

Query: 239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 298
                           +G      G +  A+ Y    L +          T +   +  C
Sbjct: 266 IPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLR------RDDTFSVTMLGHC 313

Query: 299 YTELGDLERAARFYD 313
                    A    D
Sbjct: 314 IEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 13/100 (13%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
            +    N D +  +      +E        +           +L    K  E       +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLP------VHIGTLVELNKANELFYLSHKL 82

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDK 314
           + +      Y  +  ++ A+   Y  +G   E A R+  K
Sbjct: 83  VDL------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 281
               E A      A  L +          A    G S   + ++ +A+  +    Q+   
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGP------AWIAYGHSFAVESEHDQAMAAYFTAAQLM-- 155

Query: 282 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                G       I   Y    + + A RF+ +
Sbjct: 156 ----KGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 202 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 261
           +     + +       +F     +E+A   F+          D         GL A  Q 
Sbjct: 31  IPDDMMDDIYSY--AYDFYNKGRIEEAEVFFRFLCIY-----DF-YNVDYIMGLAAIYQI 82

Query: 262 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
           + ++++A   +++   + +                 C   L    +A   ++  I  
Sbjct: 83  KEQFQQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 6/92 (6%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
                      +   L      P +              +G+  EA  +   +       
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            +Y         +A  Y      ++AA  Y  
Sbjct: 70  VDY------IMGLAAIYQIKEQFQQAADLYAV 95

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR-GLGASLQRQGKYREAIKYHSM 274
           G       D++ A   F+ AL L +  +   +   A    LG + ++   Y  AI   + 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            L +S      +     + AIA  Y        A     + ++
Sbjct: 542 GLLLS------TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G   ++  ++  A    +++  L Q   DP+        LG     +   + AI +    
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQY--DPL----LLNELGVVAFNKSDMQTAINHFQNA 501

Query: 276 LQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           L + ++           +  +   Y +L   + A    ++ + 
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 15/112 (13%), Positives = 29/112 (25%), Gaps = 14/112 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
             K  +LL                         LE+     D            ASL   
Sbjct: 301 LEKSSDLLLCK--ADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------LHLASLHES 352

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           G+  +     + ++        +      + A+   Y  +  +  A R++ K
Sbjct: 353 GEKNKLYLISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 12/99 (12%)

Query: 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
           F    + ++A + +  A  L Q    P         LG    + G    A +Y      +
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPY------LFLGMQHMQLGNILLANEYLQSSYAL 470

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                           +        D++ A   +   + 
Sbjct: 471 F------QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
            +      + +A   F  +  +            A  G   S   +G++ +AI  ++   
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDPQFGP------AWIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++      + G+   Y  +   + +LG++  A  +     +
Sbjct: 435 RL------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 273
               N   ++D  +   ++ +++   +   D             +L  + ++ + +   +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITT 329

Query: 274 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            +L+I         + + Y        E G+  +     +  + 
Sbjct: 330 KILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
            +  K +      ++       P E+      +G       K  EA +Y S    +    
Sbjct: 353 GEKNKLYLISNDLVDR-----HP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--- 403

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                   A+   A  +   G+ ++A   Y  
Sbjct: 404 ---PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALEL----------AQNVKDPIEEKKAARGLG 256
           +E+L +       +      +A + F+  + L              K+     K A  L 
Sbjct: 5   DEMLQK---VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 257 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
            + ++   Y +A  ++  +LQ          + +   A A+     G  + A R Y+K +
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 317 S 317
            
Sbjct: 116 Q 116

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 15/116 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
            P   + L      +  +     + A   ++  L+L     +  +   A   LG      
Sbjct: 84  APNNVDCLEAC--AEMQVCRGQEKDALRMYEKILQL-----EA-DNLAANIFLGNYYYLT 135

Query: 263 G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             + ++ ++     L    +         A              E+A     K I 
Sbjct: 136 AEQEKKKLETDYKKLSSPTK------MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
              + +N++ +KA+  +K  L+       P                +G+ ++A++ +  +
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQK-----AP-NNVDCLEACAEMQVCRGQEKDALRMYEKI 114

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKYIS 317
           LQ+       + +  A   + + Y    + E+       K +S
Sbjct: 115 LQLE------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G + L+  +L +A   F+A  +     ++      A R LG +     K   AI   +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALNHA 77

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +  +          + A+A  +T   +   A      ++ 
Sbjct: 78  RMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLL 113

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 6/73 (8%)

Query: 245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 304
           P    +     G S+ +     EA      V Q            EA+ ++     E   
Sbjct: 13  PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEK 66

Query: 305 LERAARFYDKYIS 317
              A    +    
Sbjct: 67  DGLAIIALNHARM 79

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE 267
           +L   +++ +  +R+     A +++++ ++            ++   +     +  K  E
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 268 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
           AI+  S VLQ+         +  A    A+ Y      + A + Y+      E+D
Sbjct: 314 AIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 22/163 (13%)

Query: 152 ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 211
           AR +RG L     +  +++ A       + +   L   P  +   E +  +  K +E+  
Sbjct: 96  ARLQRGHLLL---KQGKLDEA------EDDFKKVLKSNPSENEEKEAQSQLI-KSDEMQR 145

Query: 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 271
                 N   + D   A       LE+         + +          ++G+ R+AI  
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGEPRKAISD 199

Query: 272 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                ++       + +TEA+  I+  Y +LGD E +     +
Sbjct: 200 LKAASKLK------NDNTEAFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR 266
           E+ L     GK  L    L  A ++F AA++      DP +   A           GK +
Sbjct: 27  EKHLEL---GKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSK 77

Query: 267 EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            A+   + V+Q+          T A         + G L+ A   + K + 
Sbjct: 78  AALPDLTKVIQLK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL------G 256
                E   ++     + +  D E + +E +  L+L Q+ K      K  + L       
Sbjct: 207 KNDNTEAFYKI--STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264

Query: 257 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
             L R G+Y +A   +  V++      EY  +  +   I  C+++      A R   + +
Sbjct: 265 EELIRDGRYTDATSKYESVMKTEPSIAEY--TVRSKERICHCFSKDEKPVEAIRVCSEVL 322

Query: 317 S 317
            
Sbjct: 323 Q 323

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 33/177 (18%)

Query: 152 ARQRRGELQRVNEQLRQINAALRR---QAKIESYAPSLSYAPVGSRIPEDEVI-VDPKKE 207
                 +++++N+ +      +R          Y               + V+  +P   
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY---------------ESVMKTEPSIA 291

Query: 208 ELLSRL--KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY 265
           E   R   +    F +++   +A       L++     +P +   A +    +   +  Y
Sbjct: 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EP-DNVNALKDRAEAYLIEEMY 345

Query: 266 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
            EAI+ +    + +E         +    +      L   ++   +    + R    
Sbjct: 346 DEAIQDYETAQEHNE------NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 17/118 (14%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKA---FTEFKAALELAQNVKDPIEEKKAARGLGASL 259
                 + +R      +      + A      + + +   +               G  L
Sbjct: 33  KYNSPYIYNRR--AVCYYELAKYDLAQKDIETYFSKVNATKAKSA------DFEYYGKIL 84

Query: 260 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            ++G+   AI+ +   +         +   + YG I   +   G+   A ++ +K I 
Sbjct: 85  MKKGQDSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           GK  ++      A  +++AA++      D          +G+    +G +  AI+Y    
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDR-----DT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++ +      +   + +  +   Y    +  +A   + K + 
Sbjct: 135 IRPT------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 12/102 (11%), Positives = 19/102 (18%), Gaps = 9/102 (8%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
                +N +  +A   F            P                  KY  A K     
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAK--KYNSP----YIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                     S     +        + G    A + Y   + 
Sbjct: 64  FSKVNATKAKS---ADFEYYGKILMKKGQDSLAIQQYQAAVD 102

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG-ASLQRQGKYREAIKYHSM 274
           G+ +  N++  KA + F   LEL  N+          R    A+     K   A  Y+  
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGY----LWRARANAAQDPDTKQGLAKPYYEK 204

Query: 275 VLQISEREGEYSGS--TEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++++    G        EA   IA  YT   D  +A   +   ++
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
               L +   Y EAI+  + +            S   Y   A CY EL   + A +  + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 315 YISRLESD 322
           Y S++ + 
Sbjct: 63  YFSKVNAT 70

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 17/118 (14%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           D  + ++  ++  G  F    +   A    +  +                  LG +    
Sbjct: 104 DTTRLDMYGQI--GSYFYNKGNFPLAIQYMEKQIRPTTTDPK------VFYELGQAYYYN 155

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER---AARFYDKYIS 317
            +Y +A      VL++             Y   A          +   A  +Y+K I 
Sbjct: 156 KEYVKADSSFVKVLEL------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 202 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 261
           +     E L  L    N  ++   E A   F+A   L     D   + +   GLGA  Q 
Sbjct: 16  ISSDTLEQLYSL--AFNQYQSGXYEDAHXVFQALCVL-----DH-YDSRFFLGLGACRQA 67

Query: 262 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            G+Y  AI  +S    +   E             A+C  + G+L  A         
Sbjct: 68  MGQYDLAIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQE 117

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 273
           +    +   ++L  A   F  A +  +   +  E            +  G    A+    
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101

Query: 274 MVLQISEREGEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISRLESD 322
             +QI    G++         + +    +L D  +A   Y+        D
Sbjct: 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSM 274
            K F    +   A    + A+++  +             LG  L      Y +AI  + +
Sbjct: 84  YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143

Query: 275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
             +   ++   + S + +   AD     G    A+  Y K I  
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK-YHSMVLQISER 281
            D  KA   ++ A E     +      K            G+Y EA   Y  ++      
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 282 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
            FL  Q   E+A+     A +     +      +    LG    +  K  +A +Y    L
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERS----RVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +++               +AD   +  +   A ++YD +  
Sbjct: 169 RLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + + A  E++ AL                   G  L  Q +Y EA +      Q +    
Sbjct: 86  EPKLADEEYRKALASDSRNAR------VLNNYGGFLYEQKRYEEAYQRLLEASQDT---- 135

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            Y   +  +  +     ++    +A  +++K + 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
            L+ +   +A   F+ +L L     +   +   A  +   L ++ +Y  A +Y+ +  Q 
Sbjct: 151 SLQMKKPAQAKEYFEKSLRL-----NR-NQPSVALEMADLLYKEREYVPARQYYDLFAQG 204

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
                    +  +            D + AA +  +    
Sbjct: 205 G------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           LG    ++G   +A       L+I         S +A+ A+A  +    + + A   Y K
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEID------PSSADAHAALAVVFQTEMEPKLADEEYRK 96

Query: 315 YIS 317
            ++
Sbjct: 97  ALA 99

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 12/101 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  +L+  + E+A    + ALE+  +  D      A   L    Q + + + A + +   
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSAD------AHAALAVVFQTEMEPKLADEEYRKA 97

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           L         S +            E    E A +   +  
Sbjct: 98  LASD------SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 268
           L   +++ +  +R+     A +++++ ++            ++   +     +  K  EA
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 269 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           I+  S VLQ+         +  A    A+ Y      + A + Y+    
Sbjct: 292 IRICSEVLQMEPD------NVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG-LGASLQRQGKY 265
           E+ L     GK  L    L  A ++F AA++      DP  +   A           GK 
Sbjct: 4   EKHLEL---GKKLLAAGQLADALSQFHAAVDG-----DP--DNYIAYYRRATVFLAMGKS 53

Query: 266 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           + A+   + V+ +          T A         + G L+ A   + K + 
Sbjct: 54  KAALPDLTKVIALK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 264
           K +E+        +     D   A T     LE+   V D     +          ++G+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDA----ELRELRAECFIKEGE 169

Query: 265 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            R+AI       ++       S +TEA+  I+  Y +LGD E +     +
Sbjct: 170 PRKAISDLKAASKLK------SDNTEAFYKISTLYYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 198 DEVI-VDPKKEELLSRL--KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 254
           + V+  +P   E   R   +    F +++   +A       L++     +P +   A + 
Sbjct: 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-----EP-DNVNALKD 311

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER 307
              +   +  Y EAI+ +    + +E         +    +      L   ++
Sbjct: 312 RAEAYLIEEMYDEAIQDYEAAQEHNE------NDQQIREGLEKAQRLLKQSQK 358

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.5 bits (132), Expect = 8e-09
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 215 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 274
           T     + ++ EK   + +A   +     +P E+ + AR  G     +  +  A+K ++ 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYV-----NP-EKAEEARLEGKEYFTKSDWPNAVKAYTE 164

Query: 275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +++      E +     Y   A    +L     A    +K I 
Sbjct: 165 MIKR---APEDA---RGYSNRAAALAKLMSFPEAIADCNKAIE 201

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.3 bits (116), Expect = 9e-07
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  F + +  ++A   +  A EL +++              A+   +G+Y  AI   +  
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAISTLNDA 64

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           ++              Y  I+  +  +G+         K I
Sbjct: 65  VEQ------GREMRADYKVISKSFARIGNAYHKLGDLKKTI 99

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 13/103 (12%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
            K+F R  +      + K  +E  Q                  L +     + +K     
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSL-------TEHRTADILTKLRNAEKELKKAEAE 131

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
             ++    E +   E        Y    D   A + Y + I R
Sbjct: 132 AYVNP---EKA---EEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           + E A +    A+E         E +   + +  S  R G     +      ++      
Sbjct: 53  EYETAISTLNDAVEQ-----GR-EMRADYKVISKSFARIGNAYHKLGDLKKTIEY----- 101

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            Y  S   +   AD  T+L + E+  +  +    
Sbjct: 102 -YQKSLTEHR-TADILTKLRNAEKELKKAEAEAY 133

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           +P+K E       GK +    D   A   +   ++       P E+ +      A+L + 
Sbjct: 135 NPEKAEEARLE--GKEYFTKSDWPNAVKAYTEMIKR-----AP-EDARGYSNRAAALAKL 186

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             + EAI   +  ++    +  +     AY   A     + +   A    D   +
Sbjct: 187 MSFPEAIADCNKAIEK---DPNFV---RAYIRKATAQIAVKEYASALETLDAART 235

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 218 NFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
            FL  +     ++   F  AL              A    G    +QG++  A  Y    
Sbjct: 84  WFLCGRLNRPAESMAYFDKALADPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRS 139

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
           L              A+  +A      G L  A  ++ KY SR+E
Sbjct: 140 LAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 17/133 (12%), Positives = 30/133 (22%), Gaps = 37/133 (27%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
              ++R QD  +A    + AL+     +       A        Q      +A +     
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNEL------AWLVRAEIYQYLKVNDKAQESFRQA 68

Query: 276 LQIS---------------EREGE----------------YSGSTEAYGAIADCYTELGD 304
           L I                 R                   Y     A      C  + G 
Sbjct: 69  LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128

Query: 305 LERAARFYDKYIS 317
              A  +  + ++
Sbjct: 129 FGLAEAYLKRSLA 141

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L     R   YR+A       L+          +  A+   A+ Y  L   ++A   + +
Sbjct: 14  LAMEYMRGQDYRQATASIEDALKSD------PKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 315 YIS 317
            +S
Sbjct: 68  ALS 70

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G   L+  DL       +AA+       DP  + +A + LG +       + AI      
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQ-----DP-GDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           L++         + +A  A+A  YT     + A      +I 
Sbjct: 126 LELQ------PNNLKALMALAVSYTNTSHQQDACEALKNWIK 161

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
           F  + +  +A   F AAL +    +D          LGA+L    +  EA++ ++  L+I
Sbjct: 223 FHLSGEFNRAIDAFNAALTV--RPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEI 276

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   G   +   +      LG    A   +   +S
Sbjct: 277 Q------PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 8/92 (8%)

Query: 226 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 285
           +   +  +          +P ++   A   G    ++G     I +    +         
Sbjct: 44  QVTVSASEKGYYFHTE--NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------D 95

Query: 286 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            G  EA+  +     E  + + A     + + 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 196 PEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 255
           P+ + +V  KK       +  K+ + +  LE     +  A     ++ DP        GL
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP----DLQTGL 219

Query: 256 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 315
           G      G++  AI   +  L +             +  +          E A   Y + 
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVR------PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273

Query: 316 IS 317
           + 
Sbjct: 274 LE 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G + L+  +L +A   F+A  +       P E ++A R LG +     K   AI   +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQA-----AP-EREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +             + A+A  +T   +   A      ++ 
Sbjct: 82  RMLD------PKDIAVHAALAVSHTNEHNANAALASLRAWLL 117

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
           +  + + + A    + A+EL     D     +    LGA+L    + +EA+  ++  L I
Sbjct: 182 YNLSNNYDSAAANLRRAVEL--RPDDA----QLWNKLGATLANGNRPQEALDAYNRALDI 235

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +       G       +A  Y+ +   + AA+   + I 
Sbjct: 236 N------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 16/108 (14%)

Query: 220 LRNQ-DLEKAFTEFKAALEL---------AQNVKDPIEEKKAARGLGASLQRQGKYREAI 269
             N+ +   A    +A L                D   +    +          +YRE  
Sbjct: 99  HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158

Query: 270 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                 L+++      +   + + ++   Y    + + AA    + + 
Sbjct: 159 TLLHAALEMNP---NDA---QLHASLGVLYNLSNNYDSAAANLRRAVE 200

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G    + +D EKA   +  A+EL  +  +            A    + K+ E +++    
Sbjct: 15  GNAAYKQKDFEKAHVHYDKAIEL--DPSNIT----FYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 276 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +++  E   +Y    +A     + + +  DL  A +++ + +S
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 219 FLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 277
           +   +   +     + A+E+  +   D     KA    G + Q+Q     A+++    L 
Sbjct: 52  YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111

Query: 278 I 278
            
Sbjct: 112 E 112

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
                  +      L+ + +         +  G        + EAIKY+   +++     
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAV--QLKNRGNHFFTAKNFNEAIKYYQYAIEL----- 54

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   Y  I+ CY   GDLE+   F  K + 
Sbjct: 55  -DPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 15/202 (7%)

Query: 118 FKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQA 177
              L+   + D +     L   +      V      +  G   +V      + +      
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----- 170

Query: 178 KIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 236
               +   L  + V +    D          + L         + N  L K+   + + L
Sbjct: 171 -FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229

Query: 237 ELAQNVKDPIEEKKAA-RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 295
                     E    A    G     +    +A       + +            +Y  +
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PNSYIFL 282

Query: 296 ADCYTELGDLERAARFYDKYIS 317
           A    +  + +   +F+ K + 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD 304

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           QD + A  +F+ A  L     +P E       L   L +QGK+ E+  + +         
Sbjct: 324 QDYKNAKEDFQKAQSL-----NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK---- 373

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +    E     A+  T+ GD + A + YD    
Sbjct: 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
                  L     G       +L  A    + ++ L            +   L  +L  +
Sbjct: 239 RENAALALCYT--GIFHFLKNNLLDAQVLLQESINLHPTPN-------SYIFLALTLADK 289

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
              +E  K+    + ++            Y      Y  L D + A   + K  S
Sbjct: 290 ENSQEFFKFFQKAVDLN------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G +F   ++  +A   ++ A+EL     DP  E      + A     G   + I++ +  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIEL-----DP-NEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L+I          ++A    A     LG+   A      
Sbjct: 86  LEIK------PDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           ++ ++ F  F+ A++L     +P E        G        Y+ A +       ++   
Sbjct: 290 ENSQEFFKFFQKAVDL-----NP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-- 341

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
            E       Y  +A    + G    +  F+++   +
Sbjct: 342 -ENV---YPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 223 QDLEKAFTEFKAALELAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYH 272
            D + A  ++  A  L +           +               +   + K+  AIK  
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 273 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +   ++  R      S +A   +A    ++  ++ A   ++    
Sbjct: 452 TKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 264
           K   L  +       L  +    A      A EL     DP   ++A  GL     +  K
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-----DP-RSEQAKIGLAQLKLQMEK 477

Query: 265 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
             EAI+       ++          E   A    + E   +++  R      +++E
Sbjct: 478 IDEAIELFEDSAILARTMD------EKLQATT--FAEAAKIQKRLRADPIISAKME 525

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 9/107 (8%), Positives = 26/107 (24%), Gaps = 16/107 (14%)

Query: 221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 280
           +     ++   F         + +              L  +G +  AIK + +  ++ E
Sbjct: 356 KQGKFTESEAFFNETKLKFPTLPE------VPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 281 REGEY----------SGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            + +           +       +      +      A +   K   
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 272
           ++      +  D E A               +P +       L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQ-----EP-DNTGVLLLLSSIHFQCRRLDRSAHFS 56

Query: 273 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++ ++            EAY  + + Y E G L+ A   Y   + 
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 220 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
              Q ++  A   F+ A+ L  N  D      A   LG  L+    +  A+  +   L +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           S            +G +A  Y E G ++ A   Y + I 
Sbjct: 233 S------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N L+    LE+A   +  A+E   N         A   LG     QG+   AI +    +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            +           +AY  + +   E    +RA   Y + +S
Sbjct: 197 TLD------PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 220 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
           L+ +  + +A   +  AL L      P     +   L    + QG   EA++ +   L++
Sbjct: 281 LKEKGSVAEAEDCYNTALRL-----CP-THADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                       A+  +A    + G L+ A   Y + I 
Sbjct: 335 F------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           +P   E  S L  G  +     L++A   ++ AL L  +  D          L A+L   
Sbjct: 63  NPLLAEAYSNL--GNVYKERGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAA 114

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           G    A++ +   LQ +               + +    LG LE A   Y K I 
Sbjct: 115 GDMEGAVQAYVSALQYN------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 220 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
              Q  ++ A   ++ A+EL      P     A   L  +L+ +G   EA   ++  L++
Sbjct: 247 YYEQGLIDLAIDTYRRAIEL-----QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                      ++   +A+   E G++E A R Y K + 
Sbjct: 301 C------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           +P    +L  L       + + L+++      A++      +P    +A   LG   + +
Sbjct: 29  EPDNTGVLLLL--SSIHFQCRRLDRSAHFSTLAIKQ-----NP-LLAEAYSNLGNVYKER 80

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           G+ +EAI+++   L++           + Y  +A      GD+E A + Y   + 
Sbjct: 81  GQLQEAIEHYRHALRL------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
               +   D+E A   + +AL+   ++            LG  L+  G+  EA   +   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYC------VRSDLGNLLKALGRLEEAKACYLKA 161

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++             A+  +   +   G++  A   ++K ++
Sbjct: 162 IET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N L+     ++A   +  AL L+ N             L      QG    AI  +   +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++           +AY  +A+   E G +  A   Y+  + 
Sbjct: 265 ELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N  R Q ++E+A   ++ ALE+      P E   A   L + LQ+QGK +EA+ ++   +
Sbjct: 313 NIKREQGNIEEAVRLYRKALEV-----FP-EFAAAHSNLASVLQQQGKLQEALMHYKEAI 366

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGD 304
           +IS          +AY  + +   E+ D
Sbjct: 367 RIS------PTFADAYSNMGNTLKEMQD 388

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G   L+  DL  A   F+AA++      DP +  +A + LG +     +   AI      
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQ-----DP-KHMEAWQYLGTTQAENEQELLAISALRRC 124

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           L++         +  A  A+A  +T      +A      ++ 
Sbjct: 125 LELK------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 9/111 (8%)

Query: 204 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 263
            + EE+  R      +L + D +     +    +  +   +P+ +       G    ++G
Sbjct: 22  AELEEMAKRDAEAHPWLSDYD-DLTSATYDKGYQFEEE--NPLRDHPQPFEEGLRRLQEG 78

Query: 264 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
               A+      +Q            EA+  +     E      A     +
Sbjct: 79  DLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 268
           L    +   + L +    +    F AA+ L     DP        GLG      G+Y +A
Sbjct: 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKA 236

Query: 269 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +   +  L +             +  +          E A   Y + + 
Sbjct: 237 VDCFTAALSVRP---NDY---LLWNKLGATLANGNQSEEAVAAYRRALE 279

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
           F  + + +KA   F AAL +      P  +      LGA+L    +  EA+  +   L++
Sbjct: 227 FNLSGEYDKAVDCFTAALSV-----RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   G   +   +      LG    A   + + ++
Sbjct: 281 Q------PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 277
              +  D ++A    K   E +   +      +   G   ++  Q          +    
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG---NISEQTLMERLKADATDNTS 209

Query: 278 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++E        +E    +   Y  LGDL+ A   +   ++
Sbjct: 210 LAEH------LSETNFYLGKYYLSLGDLDSATALFKLAVA 243

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 24/148 (16%)

Query: 170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAF 229
              L+++  +      L+             + D ++ +LL     G  +        A 
Sbjct: 16  QPTLQQEVILARMEQILASRA----------LTDDERAQLLYER--GVLYDSLGLRALAR 63

Query: 230 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 289
            +F  AL +  ++ +          LG  L + G +  A +    VL++           
Sbjct: 64  NDFSQALAIRPDMPE------VFNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYN 111

Query: 290 EAYGAIADCYTELGDLERAARFYDKYIS 317
            A+          G  + A      +  
Sbjct: 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQ 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 11/97 (11%), Positives = 26/97 (26%), Gaps = 12/97 (12%)

Query: 218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 277
           N      +E+   +      LA+++ +          LG      G    A     + + 
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSE------TNFYLGKYYLSLGDLDSATALFKLAVA 243

Query: 278 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            +        +   +       + LG  +      D+
Sbjct: 244 NN------VHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
              +A   ++ A+      KD  E      GLG++ +  G+YR+A    +  ++      
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQ----- 56

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
            +          A     LG  E+      K I+    D
Sbjct: 57  -FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 262 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
            G   +A+ Y+   +    +  + +   E Y  +   +  LG+  +A       + +
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 15/142 (10%)

Query: 176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 235
               ES+  +            ++  +  K    L     G       D   A  + K A
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT--GIFKFLKNDPLGAHEDIKKA 263

Query: 236 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 295
           +EL   V        +   +   +  +    E   Y    L++       S     Y   
Sbjct: 264 IELFPRVN-------SYIYMALIMADRNDSTEYYNYFDKALKLDS---NNS---SVYYHR 310

Query: 296 ADCYTELGDLERAARFYDKYIS 317
                 L + ++A + +DK   
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE 332

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           D     +      G+     Q+ ++A  +F  A EL     DP E       L     R+
Sbjct: 300 DSNNSSVYYHR--GQMNFILQNYDQAGKDFDKAKEL-----DP-ENIFPYIQLACLAYRE 351

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
            K+ +     S   +          + E     A+  T+  D ++A + YD  I  
Sbjct: 352 NKFDDCETLFSEAKRKFPE------APEVPNFFAEILTDKNDFDKALKQYDLAIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  F RN+  + A   +  ALEL ++             L A     G  ++ ++  +  
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L++          ++     A     LG    A      
Sbjct: 66  LELK------PDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 12/124 (9%)

Query: 198 DEVI-VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA---R 253
            E     P+  E+ +     +      D +KA  ++  A+EL   +              
Sbjct: 362 SEAKRKFPEAPEVPNFF--AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419

Query: 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 313
            L         + EA        ++  R      S +A   +A    +  D++ A   ++
Sbjct: 420 TLLTRNPTVENFIEATNLLEKASKLDPR------SEQAKIGLAQMKLQQEDIDEAITLFE 473

Query: 314 KYIS 317
           +   
Sbjct: 474 ESAD 477

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 11/115 (9%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           DP+      +L       R    +   T F  A         P E  +        L  +
Sbjct: 334 DPENIFPYIQL--ACLAYRENKFDDCETLFSEAKRK-----FP-EAPEVPNFFAEILTDK 385

Query: 263 GKYREAIKYHSMVLQISEREGE-YS--GSTEAYGAIADCYTELGDLERAARFYDK 314
             + +A+K + + +++  +    Y           +      + +   A    +K
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 14/112 (12%)

Query: 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 268
           L+ +          ++  +A    + A +L     DP   ++A  GL     +Q    EA
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKL-----DP-RSEQAKIGLAQMKLQQEDIDEA 468

Query: 269 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 320
           I        ++          E   AI   + E   +++  R       +++
Sbjct: 469 ITLFEESADLARTME------EKLQAIT--FAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            G    R  KY +AIKY++  L++ E           Y  ++ CY  +GDL++      K
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKEDP-------VFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 315 YIS 317
            + 
Sbjct: 65  ALE 67

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK-KAARGLGASLQRQGKYREAIKYHSM 274
              +  N  L+K    F+  L+  + + D  E   K       +L    +Y E++   + 
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221

Query: 275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 312
            ++IS R    +   + Y    +C  +L   E      
Sbjct: 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 15/119 (12%), Positives = 42/119 (35%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
               E             + +  ++ + +    L+  +   +  +  +    + A + ++
Sbjct: 69  YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK 128

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321
             Y   I     +L       +   +     AIA+ Y E G L++    +++ + +LE+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 11/99 (11%)

Query: 220 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 278
             +  +  ++   F+ A++L     DP EE K     G +L    +Y EA+  ++ V+ +
Sbjct: 16  QYDAGNYTESIDLFEKAIQL-----DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV 69

Query: 279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            E       + + + A AD    +   E  A   +    
Sbjct: 70  IED----EYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            G      G Y E+I      +Q+   + E S   + +         L   E A   Y+ 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQL---DPEES---KYWLMKGKALYNLERYEEAVDCYNY 65

Query: 315 YIS 317
            I+
Sbjct: 66  VIN 68

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
             L      + A    + A+EL     +   + +A    G  L  +G   EA+   + V 
Sbjct: 133 TVLVKLEQPKLALPYLQRAVEL-----NE-NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +         G  +A+      Y    + E+A    DK I 
Sbjct: 187 EQD------PGHADAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
                   D EKA   F  A+E      +  E+          L    +   A+ ++   
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEE-----NK-EDAIPYINFANLLSSVNELERALAFYDKA 83

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           L++       S +  AY    + Y      + A   ++K + 
Sbjct: 84  LELD------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N    +   ++A   F+ AL          E       LG  L +  + + A+ Y    +
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRA-----GM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +++         TEA      C    G L+ A   +     
Sbjct: 153 ELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 9e-06
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N L +  +LE+A   +  ALEL     D      A  G G     +  Y+EA       L
Sbjct: 65  NLLSSVNELERALAFYDKALEL-----DS-SAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +          + + +  +     +L   + A  +  + + 
Sbjct: 119 RAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 225 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 284
           +  +      +  L    +                   G Y +A +  +  ++       
Sbjct: 1   MGSSHHHHHHSSGL--VPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------ 52

Query: 285 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                  Y   A+  + + +LERA  FYDK + 
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYDKALE 85

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query: 202 VDPKKEELLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQ 260
             PK  E  S L      L N    + A    + A+ L     +P + +     L   L 
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NP-DNQYLKVLLALKLH 220

Query: 261 R----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           +      +  E  K     L+ +       G T+   + A  Y    + ++A     K +
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKA------PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274

Query: 317 S 317
            
Sbjct: 275 E 275

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 24/134 (17%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           +     + S L            E+A   F+           P+ ++      G     Q
Sbjct: 330 NDNLFRVCSIL--ASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQ 384

Query: 263 GK-YREAIKYHSMVLQISEREGEYSGS------------------TEAYGAIADCYTELG 303
            K   +AI +    ++I+++  E                      +EA   +A       
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 304 DLERAARFYDKYIS 317
            +++A    ++ + 
Sbjct: 445 KMQQADEDSERGLE 458

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 21/128 (16%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEK 249
            P   ++L      K + R  + +KA    K ALE   N              K      
Sbjct: 243 APGVTDVLRSA--AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 309
               G+    +       A+ +     +                 +A  +      E A 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQYEEAE 354

Query: 310 RFYDKYIS 317
            ++ K  S
Sbjct: 355 YYFQKEFS 362

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 226 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE- 284
           E +  +F+  +      ++   +      L      +G+   A++      ++ ++E   
Sbjct: 28  ENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD 87

Query: 285 --YSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
                S   +G  A  Y  +G L     + DK  
Sbjct: 88  QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 218 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 270
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 9   NAYYKQGDYDEAIEYYQKALELDPRSAEAWY------------NLGNAYYKQGDYDEAIE 56

Query: 271 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           Y+   L++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 57  YYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.5 bits (104), Expect = 9e-06
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N    Q D ++A   ++ ALEL     +      A   LG +  +QG Y EAI+Y+   L
Sbjct: 43  NAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIEYYQKAL 96

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           ++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 97  ELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           LG +  +QG Y EAI+Y+   L++         S EA+  + + Y + GD + A  +Y K
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 315 YIS 317
            + 
Sbjct: 61  ALE 63

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L    + Q KY+EA    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 313 DK 314
            +
Sbjct: 109 KR 110

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L    Q QGK  E   Y+   L+I     G    +  +    +A CY + G  + A   Y
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 313 DK 314
            +
Sbjct: 193 KE 194

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L     ++GKY+EA       L+I E+  G++     +    +A      G  E    +Y
Sbjct: 91  LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150

Query: 313 DK 314
            +
Sbjct: 151 RR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 313
                + + K R++  Y        +     S +      ++   Y   G LE A    D
Sbjct: 218 AEEREESKDKRRDSAPYGEYGSWY-KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276

Query: 314 K 314
            
Sbjct: 277 C 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 311
           L +   +QGKY++A   +  +L  +  +  G  +G     +    +          +A +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 312 YDK 314
            + 
Sbjct: 235 GEY 237

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
            +  L++ +  +A   F+  +E      DP +       LG   +R  +  +AI  ++  
Sbjct: 14  AQEHLKHDNASRALALFEELVET-----DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 312
           ++++  EG      +    + D   +   LE     +
Sbjct: 68  IEVAREEGT----QKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 6/64 (9%)

Query: 254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 313
            L     +      A+     +++      +Y      Y  +   Y  L   + A   Y 
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDP---DYV---GTYYHLGKLYERLDRTDDAIDTYA 65

Query: 314 KYIS 317
           + I 
Sbjct: 66  QGIE 69

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L      QG+Y  A+      L+  E+  G            +A  Y +    + AA   
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 313 DK 314
           + 
Sbjct: 93  ND 94

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L    + Q KY++A    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 313 DK 314
            +
Sbjct: 135 KR 136

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L     ++GKY+EA       L+I E+  G+      +    +A      G  E    +Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 313 DK 314
            +
Sbjct: 177 QR 178

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 312
           L    Q QGKY E   Y+   L+I + + G    +  +    +A CY + G  ++A   Y
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 313 DK 314
            +
Sbjct: 219 KE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 311
           L +   +QGK+++A   +  +L  +     G         +    +     G  +    F
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 312 YDK 314
            + 
Sbjct: 261 GEY 263

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 313
                + +GK ++   +        +     S +       +   Y   G  E A    +
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWY-KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302

Query: 314 K 314
            
Sbjct: 303 A 303

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 9e-06
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 218 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 270
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 17  NAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIE 64

Query: 271 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           Y+   L++         + EA+  + + Y + GD + A  +Y K + 
Sbjct: 65  YYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.8 bits (97), Expect = 6e-05
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 315 YIS 317
            + 
Sbjct: 69  ALE 71

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
                +   L++A   +K A+ ++           A   +G +L+     + A++ ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPT--FA----DAYSNMGNTLKEMQDVQGALQCYTRA 103

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +QI+          +A+  +A  + + G++  A   Y   + 
Sbjct: 104 IQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
           N  R Q ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   +
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +IS          +AY  + +   E+ D++ A + Y + I 
Sbjct: 71  RIS------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G      QD++ A   +  A+++     D      A   L +  +  G   EAI  +   
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFAD------AHSNLASIHKDSGNIPEAIASYRTA 137

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 319
           L++           +AY  +A C   + D         K +S +
Sbjct: 138 LKLKPDFP------DAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
               L  QG    A++     LQ      E  G  EAY  + + Y +LGD ++A   Y  
Sbjct: 6   TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 315 YIS 317
            I 
Sbjct: 61  AIE 63

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 269
           + +LKT K  +   D+E A    +  L+      +P+ + +A   +G + ++ G +++A+
Sbjct: 1   MDQLKTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKAL 55

Query: 270 KYHSMVLQI 278
             +   +++
Sbjct: 56  NNYQSAIEL 64

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 225 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 284
           ++      +A L    +  + +        LG +     ++  A+ +    L        
Sbjct: 1   MQAITERLEAMLAQGTD--NML----LRFTLGKTYAEHEQFDAALPHLRAALDFDP---T 51

Query: 285 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           YS    A+  +       GD   A + ++  ++
Sbjct: 52  YS---VAWKWLGKTLQGQGDRAGARQAWESGLA 81

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
                     +A    +   +      D   +   A  LG +  + G      +     L
Sbjct: 16  ISHAKAGRYSQAVMLLEQVYDA-----DA-FDVDVALHLGIAYVKTGAVDRGTELLERSL 69

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             +        + +    +   Y ++   + A     K   
Sbjct: 70  ADA------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
                    + A        E      +P         LG +L   G++ EAI    + L
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEA-----NP-INFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            +           + + AIA  Y ++G  E A   + K   
Sbjct: 138 GLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 13/101 (12%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
                   +++     + +L  A +          A  LG +  +  KY  A+     V 
Sbjct: 50  IAYVKTGAVDRGTELLERSLADAPDNVK------VATVLGLTYVQVQKYDLAVPLLIKVA 103

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           + +        +      +      LG  + A   +   + 
Sbjct: 104 EAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            G S  + G+Y +A+     V          +   +    +   Y + G ++R     ++
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 315 YIS 317
            ++
Sbjct: 68  SLA 70

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 20/114 (17%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G  +   +++ +A   F  ++       D      A    G    +  KY  AIK     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINR-----DK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97

Query: 276 LQISEREGEYS------------GSTEAYGAIADCYTELGDLERAARFYDKYIS 317
             + +  G                + E    IA  Y +  + ++A        S
Sbjct: 98  --LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 231 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 290
           ++K AL+    V+DP    +    +G          EA K  +  +   +     +    
Sbjct: 21  DWKGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLA---V 72

Query: 291 AYGAIADCYTELGDLERAARFYDKYISRLESD 322
           AY      Y +    + A +   + + +L  +
Sbjct: 73  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 12/94 (12%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
           D  +   + +AA+        P ++  A   L  +    G            L +     
Sbjct: 4   DGPRELLQLRAAVRH-----RP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----- 52

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
            + G  EA   +            AA    +   
Sbjct: 53  -HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
            P   E ++RL  G+     Q   +A    + A + A            A  LG +L+  
Sbjct: 53  HPGHPEAVARL--GRVRWTQQRHAEAAVLLQQASDAAPEHPG------IALWLGHALEDA 104

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321
           G+   A   ++   Q+                + +    L D         +  + +  
Sbjct: 105 GQAEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 217 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMV 275
           K     +++EK   + +  L  AQ       E +A    G +L     Y  EA    S  
Sbjct: 76  KQQDVQEEMEKTLQQMEEVLGSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +++           EA+  + + Y + GD+  A   +   ++
Sbjct: 130 VKL------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 9/92 (9%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           +  ++A + +  A ++ +      +            + +  Y EA++  S    +    
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPD---LHLNRATLHKYEESYGEALEGFSQAAALD--- 288

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                  E           L  L        K
Sbjct: 289 ---PAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 13/117 (11%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--------Q 260
           +L +L+T      ++ +  +  + K A+++  +V D     ++   LG +         Q
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDG----RSWYILGNAYLSLYFNTGQ 232

Query: 261 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                ++A+  ++   ++  +        + +   A  +        A   + +  +
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNP---DLHLNRATLHKYEESYGEALEGFSQAAA 286

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 315 YIS 317
            + 
Sbjct: 69  ALE 71

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 13/94 (13%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
            LE+A +  K A  +     +P          G      G+  +A       L + +   
Sbjct: 99  YLEQALSVLKDAERV-----NP-RYAPLHLQRGLVYALLGERDKAEASLKQALALED--- 149

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
               + E   A+A+ Y  +G L+ A   Y K + 
Sbjct: 150 ----TPEIRSALAELYLSMGRLDEALAQYAKALE 179

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 218 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 276
                  + +KA    K AL L    +           L       G+  EA+  ++  L
Sbjct: 126 LVYALLGERDKAEASLKQALALEDTPE-------IRSALAELYLSMGRLDEALAQYAKAL 178

Query: 277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           + +          +     A      G  E AAR    
Sbjct: 179 EQA------PKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           LG  L   G+Y  A+      L+ +          EA   +A    +LG +  A      
Sbjct: 11  LGVQLYALGRYDAALTLFERALKEN------PQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 315 YIS 317
            ++
Sbjct: 65  LVA 67

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
           G +  + +D + A   +  A EL     DP           A    +G Y +  +     
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKEL-----DP-TNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 276 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           +++  E   +Y    +AY  I + Y +    + A  FY+K
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 10/94 (10%), Positives = 22/94 (23%), Gaps = 12/94 (12%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
            +++       A  L      P E+  A    G   Q     +  +        ++    
Sbjct: 359 TVQRLLPVLCQAHGL-----TP-EQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 408

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                  A  +       L  ++R      +   
Sbjct: 409 --PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 9/95 (9%), Positives = 23/95 (24%), Gaps = 12/95 (12%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           + +++       A  L      P ++  A    G   Q     +  +        ++   
Sbjct: 290 ETVQRLLPVLCQAHGL-----TP-QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--- 340

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   A  +       L  ++R      +   
Sbjct: 341 ---PQQVVAIASHDGGKQALETVQRLLPVLCQAHG 372

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 12/95 (12%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           + +++       A  L      P ++  A        Q     +  +        ++   
Sbjct: 256 ETVQRLLPVLCQAHGL-----TP-QQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--- 306

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   A  +       L  ++R      +   
Sbjct: 307 ---PQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 12/95 (12%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           + +++       A  L      P ++  A        Q     +  +        ++   
Sbjct: 324 ETVQRLLPVLCQAHGL-----TP-QQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--- 374

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   A  +       L  ++R      +   
Sbjct: 375 ---PEQVVAIASNGGGKQALETVQRLLPVLCQAHG 406

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 9/94 (9%), Positives = 23/94 (24%), Gaps = 12/94 (12%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
            +++       A  L      P ++  A    G   Q     +  +        ++    
Sbjct: 223 TVQRLLPVLCQAHGL-----TP-QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 272

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                  A  + +     L  ++R      +   
Sbjct: 273 --PQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 9/95 (9%), Positives = 22/95 (23%), Gaps = 12/95 (12%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
           + +++       A  L      P E+  A        Q     +  +        ++   
Sbjct: 120 ETVQRLLPVLCQAHGL-----TP-EQVVAIASHDGGKQALETVQALLPVLCQAHGLT--- 170

Query: 283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
                   A  +       L  ++R      +   
Sbjct: 171 ---PEQVVAIASNGGGKQALETVQRLLPVLCQAHG 202

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 12/99 (12%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 283
            +++       A  L      P E+  A        Q     +  +        ++    
Sbjct: 393 TVQRLLPVLCQAHGL-----TP-EQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 442

Query: 284 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
                  A  +       L  +       D  ++ L +D
Sbjct: 443 --PQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 14/112 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
            P++   ++    GK  L  + +++       A  L      P ++  A    G   Q  
Sbjct: 170 TPEQVVAIASNGGGKQAL--ETVQRLLPVLCQAHGL-----TP-QQVVAIASNGGGKQAL 221

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
              +  +        ++           A  +       L  ++R      +
Sbjct: 222 ETVQRLLPVLCQAHGLT------PQQVVAIASNGGGKQALETVQRLLPVLCQ 267

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 2/100 (2%)

Query: 224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-E 282
           +L ++    +   ++A+          +       L  QG  + A +      Q+     
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 283 GEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLES 321
            E     E      A        L+ A       I  L S
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 268
           L+  ++  ++ L  + L    TE    + L +     I      +    S   +GK  E+
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI----IYQIKAVSALVKGKTDES 296

Query: 269 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
            +  +  + +         S   Y  +   Y   G    AA  Y  
Sbjct: 297 YQAINTGIDLEM-------SWLNYVLLGKVYEMKGMNREAADAYLT 335

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 196 PEDEVIVDPKKEELLSRLK-TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 254
            E   +   +K E  + +K  G  + +    ++A  ++K  +   +       E+     
Sbjct: 133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ 192

Query: 255 ---------LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 305
                    L     +   +  AI+  +  L++         + +      + +  + D 
Sbjct: 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS------NNEKGLSRRGEAHLAVNDF 246

Query: 306 ERAARFYDK 314
           E A   + K
Sbjct: 247 ELARADFQK 255

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           D                   + L+ A+  F+   +                G  A    Q
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACHMAQ 213

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 321
           G++  A       L         SG  E    +      LG         ++Y+S+L+ 
Sbjct: 214 GRWEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVT---NRYLSQLKD 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.65
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.59
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.59
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.56
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.56
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.54
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.54
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.51
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.48
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.46
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.45
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.44
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.44
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.43
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.43
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.43
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.43
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.4
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.4
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.38
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.36
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.34
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.33
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.33
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.33
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.32
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.31
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.29
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.26
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.25
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.25
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.25
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.24
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.24
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.21
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.21
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.19
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.18
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.17
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.16
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.15
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.11
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.11
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.1
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.1
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.09
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.01
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.99
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.99
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.98
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.98
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.96
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.95
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.94
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.91
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.9
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.87
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.85
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.82
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.82
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.8
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.78
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.74
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.72
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.51
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.48
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.43
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.4
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.38
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.33
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.33
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.26
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.23
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.18
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.17
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.16
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.14
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.09
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.06
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.01
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.0
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.87
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.74
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.66
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.66
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.61
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.51
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.34
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.08
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.85
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.75
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.49
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.46
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.61
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.52
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.49
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.39
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.3
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.11
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.81
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.73
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.57
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.43
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.32
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.31
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.07
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.64
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.36
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.26
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.81
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.99
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	83.51
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.35
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.55
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	82.21
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.53
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	80.08

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.65  E-value=2.5e-14  Score=115.15  Aligned_cols=139  Identities=23%  Similarity=0.298  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..+++++...+.          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++
T Consensus        23 ~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   92 (164)
T 3ro3_A           23 GNFRDAVIAHEQRLLIAKE----------FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC   92 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHH----------hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            3677888888888888765          445555677899999999999999999999999999999999998889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .++|.++...|++++|++++++++++.+..++.+..+.++.++|.+|...|++++|.+++++++++.++
T Consensus        93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888888999999999999999999999999999998764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.63  E-value=4.8e-15  Score=118.65  Aligned_cols=103  Identities=16%  Similarity=0.252  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ..+..+.++|..|+..|+|++|++.|++++++.|.      ...+++++|.+|..+|++++|+..|++++++      +|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p   78 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRL------DS   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh------hh
Confidence            46788899999999999999999999999999988      7889999999999999999999999999999      88


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+.+|+++|.+|..+|++++|+++|++++++.++
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~  113 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS  113 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence            88999999999999999999999999999998765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=1.8e-15  Score=125.59  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      .....+++.+|..++..|++++|+..|++++++.|.      ...+++++|.++..+|+|++|+++|++++++      +
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l------~  100 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL------G  100 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------S
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------C
Confidence            337889999999999999999999999999999998      8889999999999999999999999999999      8


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            888899999999999999999999999999987653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.60  E-value=7.9e-14  Score=126.88  Aligned_cols=139  Identities=15%  Similarity=0.119  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      ..+.+.+++.|.+++...+.          .++....+.++.++|.+|...|++++|+.+|++++++.+..++....+.+
T Consensus        50 ~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           50 RKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             TTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34778999999999998766          45555668899999999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~~-gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.++|.+|... |++++|+.+|++++++.+..++....+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            99999999996 9999999999999999887776666678899999999999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=1.8e-14  Score=115.28  Aligned_cols=108  Identities=16%  Similarity=0.342  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CC
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EY  285 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~-d~  285 (322)
                      ..+.++.++|..++..|+|++|+.+|++++++.|.      ...+++++|.+|..+|+|++|++++++++++.+... +.
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence            45678889999999999999999999999999988      788999999999999999999999999999977654 33


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...+.++.++|.+|..+|++++|+++|+++++..+
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            45678999999999999999999999999998643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.59  E-value=6.8e-14  Score=126.99  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-~d~~~~~~a~  252 (322)
                      +.+.++..|++++.....          ..+....+.++.++|.+|...|++++|+.+|+++++..+.. .+......++
T Consensus       130 ~~~~Ai~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCC----------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcc----------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence            558888899999986544          22333466789999999999999999999999999999887 6777788899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g-d~e~A~~~~~kAl~i~e  320 (322)
                      +++|.+|..+|+|++|++++++++++.+..++....+.+++++|.+|..+| ++++|.++|++|+.+++
T Consensus       200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888889999999999999999 57999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.59  E-value=8.1e-15  Score=120.61  Aligned_cols=120  Identities=12%  Similarity=0.102  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.+++.+++++...|.                ....++.+|.+|+..|+|++|+++|++++++.|.      ...+++
T Consensus        12 ~~e~ai~~~~~a~~~~p~----------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~   69 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQ----------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHR   69 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHH----------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             hHHHHHHHHHHhcccCcc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            556777788888776655                6667889999999999999999999999999998      889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF-YDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~-~~kAl~i~e~  321 (322)
                      ++|.+|...|++++|+.+|++++++      +|..+.+++++|.+|...|++++|.+. +++++++.++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~  132 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG  132 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999      888899999999999999999887765 5999988764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.59  E-value=2e-13  Score=115.26  Aligned_cols=139  Identities=13%  Similarity=0.067  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-hHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKA  251 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d-~~~~~~a  251 (322)
                      .+.+.++..+++++.....          .++....+.++.++|.+|...|++++|+.++++++++.+..++ ......+
T Consensus        40 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  109 (203)
T 3gw4_A           40 DRFDEARASFQALQQQAQK----------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN  109 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence            3677888889999988766          4566667889999999999999999999999999999999884 4578889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +.++|.++...|++++|+.++++++++.+..++....+.++.++|.+|...|++++|..++++++++.++
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888788889999999999999999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.57  E-value=2.9e-13  Score=126.90  Aligned_cols=140  Identities=18%  Similarity=0.232  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHhHhhhcccCCCCCccccccCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          171 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       171 ~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~-~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ...+.+.++..+.+++...+.          .++ ....+.++.++|.+|...|++++|+++|++++++.+..++....+
T Consensus       155 ~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (383)
T 3ulq_A          155 YMKQTYFSMDYARQAYEIYKE----------HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG  224 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHT----------CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHh----------CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            333778999999999998876          333 556788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .++.++|.+|..+|++++|++++++++++.+..++.+..+.++.++|.+|..+|++++|..++++++++.+
T Consensus       225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887688899999999999999999999999999998864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.57  E-value=2.6e-13  Score=127.28  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-hHHHHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKK  250 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d-~~~~~~  250 (322)
                      ..+.+.++..|++++.....          .++....+.+++.+|.+|...|++++|+.++++++++.+..++ ....+.
T Consensus       116 ~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          116 QREYLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             TTCHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            34678889999999988765          4556668889999999999999999999999999999999887 777889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++.++|.+|...|++++|+++|++++++.++.++.+..+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  255 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE  255 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888999999999999999999999999999999754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.56  E-value=4.3e-14  Score=144.89  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +.+++++|.+|..+|++++|++.|++++++.++      ...+++++|.+|..+|++++|+++|++++++      +|..
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l------~P~~  144 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASYRTALKL------KPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Confidence            344444555555555555555555555554444      4444555555555555555555555555544      4444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +.++.++|.+|..+|++++|.+.|++++++.
T Consensus       145 ~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          145 PDAYCNLAHCLQIVCDWTDYDERMKKLVSIV  175 (723)
T ss_dssp             HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             hHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence            4455555555555555555555555554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.56  E-value=1.7e-13  Score=125.55  Aligned_cols=131  Identities=14%  Similarity=0.041  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .+.++..|++++...+.          .++....+.++.++|.+|.. |++++|+.+|++++++.+..++......++.+
T Consensus        92 ~~~A~~~~~~Al~l~~~----------~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           92 MPEAVQYIEKASVMYVE----------NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             GGGGHHHHHHHHHHHHT----------TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            35555666666665554          55555556666777777766 77777777777777777776666666667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      +|.+|..+|+|++|+.+|++++++.++.++.+....++.++|.++..+|++++|..+|++++
T Consensus       161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            77777777777777777777777766666555555667777777777777777777777776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.55  E-value=2.5e-13  Score=123.27  Aligned_cols=137  Identities=17%  Similarity=0.128  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH-HHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~-~~~a~  252 (322)
                      +.+.++..+++++...+.          ..+....+.++.++|.+|...|++++|+.+|++++++.+...+... ...++
T Consensus       130 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~  199 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLT----------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR  199 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCC----------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence            567888888888877654          2233335778999999999999999999999999999887765544 34899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A-~~~~~kAl~i~e  320 (322)
                      +++|.+|..+|+|++|++++++++++.+..++....+.+++++|.+|..+|++++| ..+|++|+.+++
T Consensus       200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987777777899999999999999999999 888999998875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.54  E-value=8.1e-14  Score=114.51  Aligned_cols=102  Identities=22%  Similarity=0.139  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....++.+|..++..|++++|+..|++++++.|.      ...+++++|.++...|++++|+.+|++++++      .|.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~   87 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------DIX   87 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STT
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCC
Confidence            7778999999999999999999999999999988      7889999999999999999999999999999      788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            8899999999999999999999999999987653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.54  E-value=3.9e-13  Score=126.08  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d-~~~~~~a~  252 (322)
                      +.+.++..|++++...+.          .++....+.+++++|.+|...|++++|+.++++++++.+..++ ....+.++
T Consensus       116 ~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            445555566666555443          2333444555555555555555555555555555555555444 33445555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .++|.+|...|++++|+++|++++++.++.++....+.++.++|.+|..+|++++|+.+|++++++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.52  E-value=8.8e-13  Score=123.66  Aligned_cols=137  Identities=14%  Similarity=0.134  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~-~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      .+.+.++..+.+++...+.          .++ ....+.++.++|.+|...|++++|+++|++++++.+..++....+.+
T Consensus       155 ~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  224 (378)
T 3q15_A          155 KQTHVSMYHILQALDIYQN----------HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS  224 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHT----------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHh----------CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3778899999999998876          222 44578889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.++|.+|..+|++++|++++++++++.+..+++.. +.++.++|.+|..+|++++|..++++++++.+
T Consensus       225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888776555 89999999999999999999999999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.52  E-value=5.8e-13  Score=106.96  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=109.6

Q ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       203 ~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      ++....+.++..+|.++...|++++|+.++++++++.+..++......++.++|.++...|++++|++++++++++.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            34556778899999999999999999999999999999988888888999999999999999999999999999999998


Q ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++.+....++.++|.++...|++++|.+++++++++.+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.51  E-value=1.4e-13  Score=111.58  Aligned_cols=103  Identities=22%  Similarity=0.198  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      .....++.+|..++..|++++|+..|++++.+.|.      ...+++++|.++...|++++|+.+|++++++      .|
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p   83 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALM------DI   83 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CC
Confidence            36778899999999999999999999999999888      7889999999999999999999999999999      78


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+.+++++|.+|..+|++++|+.+|++++++.+.
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            88889999999999999999999999999988653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.51  E-value=6.8e-13  Score=110.79  Aligned_cols=115  Identities=16%  Similarity=0.161  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~------d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      .+..+...|..++..|+|++|+..|++++++.|...      .....+.+|.|+|.++..+|+|++|+.+|+++|++..+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            566788999999999999999999999999999832      12235569999999999999999999999999998444


Q ss_pred             -cCCCchHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          282 -EGEYSGSTEAY----GAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       282 -~~d~~~~a~a~----~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                       ..-+|..+.+|    +++|.++..+|++++|+..|++++++.++|
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence             33466788888    999999999999999999999999998765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.50  E-value=8.2e-13  Score=119.81  Aligned_cols=152  Identities=13%  Similarity=0.025  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          159 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  238 (322)
Q Consensus       159 ~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l  238 (322)
                      ...+.+++.......+.+.+++.+.+++...+.          ...........+.+|..+...|++++|+.++++++++
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  144 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ  144 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            334455555555566788888888888876543          1122234455677999999999999999999999998


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       239 ~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a-~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .+...+......+++++|.+|..+|+|++|+.+|++++++.+..++.+... .+++++|.+|..+|++++|+++++++++
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          145 QLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            887777777788999999999999999999999999999988876655433 7999999999999999999999999998


Q ss_pred             hhh
Q 020735          318 RLE  320 (322)
Q Consensus       318 i~e  320 (322)
                      +.+
T Consensus       225 ~~~  227 (293)
T 2qfc_A          225 ISC  227 (293)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=3.2e-13  Score=106.47  Aligned_cols=100  Identities=15%  Similarity=0.160  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..+..+|..++..|++++|+..|++++++.+.      ...+++++|.++...|++++|+.+|++++++      +|.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEK------DPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC
Confidence            5667889999999999999999999999999888      7889999999999999999999999999999      788


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ...+++++|.+|..+|++++|+.+|++++++.
T Consensus        71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           71 FVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            88999999999999999999999999999887

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.50  E-value=3.1e-13  Score=111.80  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=98.2

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       205 ~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      ....+..++.+|.+++..|++++|+.+|++++++.+.      ...+++++|.+|...|++++|+.+|++++++      
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVV------   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence            3457888999999999999999999999999999988      7889999999999999999999999999999      


Q ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          285 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++....+++++|.+|..+|++++|+.+|++++++.++
T Consensus        75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            7888999999999999999999999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=3.2e-13  Score=117.49  Aligned_cols=122  Identities=12%  Similarity=0.030  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+.++..|++++...|.                ...+++.+|.++...|++++|+..|++++++.|.      ..
T Consensus        16 ~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~   73 (217)
T 2pl2_A           16 YALGRYDAALTLFERALKENPQ----------------DPEALYWLARTQLKLGLVNPALENGKTLVARTPR------YL   73 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSS----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cH
Confidence            3334566677777777776666                4566777777777777777777777777777776      56


Q ss_pred             HHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          250 KAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       250 ~a~~~LG~~~~~~-----------gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .+++++|.++...           |++++|+..|++++++      .|..+.++.++|.+|..+|++++|+..|++++++
T Consensus        74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV------NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            6677777777777           7777777777777777      6666667777777777777777777777777665


Q ss_pred             h
Q 020735          319 L  319 (322)
Q Consensus       319 ~  319 (322)
                      .
T Consensus       148 ~  148 (217)
T 2pl2_A          148 E  148 (217)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.48  E-value=1.1e-12  Score=119.98  Aligned_cols=141  Identities=13%  Similarity=0.052  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHH
Q 020735          169 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE  248 (322)
Q Consensus       169 ~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~  248 (322)
                      .....+.+.+++.|.+++...+.          .++....+.++.++|.+|...|++++|+.+|++++++.+..++....
T Consensus        46 ~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~  115 (307)
T 2ifu_A           46 FKNAKQLEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA  115 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            33445677788888888888887          56677789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..++.++|.+|.. |++++|+++|++++++.+..++....+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999 9999999999999999999999999999999999999999999999999999999865

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.48  E-value=1.1e-12  Score=119.14  Aligned_cols=149  Identities=14%  Similarity=0.043  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~-g~~~~Al~~~~kAl~l~~  240 (322)
                      +.+.+.......+.+.++..|++++...+.          .++....+.++.++|.+|... |++++|+.+|++++++.+
T Consensus        80 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~----------~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~  149 (292)
T 1qqe_A           80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTH----------RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            333333333444889999999999998876          455555677899999999996 999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~-~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..++......++.++|.++..+|+|++|+.+|++++++....... .....++.++|.+|..+|++++|+.+|++++++.
T Consensus       150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            888777778899999999999999999999999999885543332 2345689999999999999999999999998765


Q ss_pred             h
Q 020735          320 E  320 (322)
Q Consensus       320 e  320 (322)
                      +
T Consensus       230 p  230 (292)
T 1qqe_A          230 P  230 (292)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.48  E-value=9.1e-13  Score=119.49  Aligned_cols=149  Identities=13%  Similarity=0.058  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEE-LLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~-a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      .+.+++.......+.+.++..+++++...+.           .+.... +..+..+|..+...+++++|+.+|++++++.
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~  145 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ  145 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC-----------CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccC-----------ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence            4444455555555778888888888875433           111112 3344568999999999999999999999987


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~-~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ....+......++.++|.+|..+|+|++|+.+|++++++.+.. .+.+..+.+++++|.+|..+|++++|++++++++++
T Consensus       146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            7777777778889999999999999999999999999999887 566678889999999999999999999999999998


Q ss_pred             hh
Q 020735          319 LE  320 (322)
Q Consensus       319 ~e  320 (322)
                      .+
T Consensus       226 ~~  227 (293)
T 3u3w_A          226 SC  227 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.48  E-value=1.6e-12  Score=108.77  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+.+++...+.                ...++..+|..+...++++.|...+.+++++.+.      ...++.
T Consensus        54 ~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~  111 (184)
T 3vtx_A           54 LPNDAIESLKKFVVLDTT----------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYY  111 (184)
T ss_dssp             CHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHhcCch----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHH
Confidence            556666666666666555                4556777888888888888888888888888777      678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++..+|++++|++.|++++++      +|..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       112 ~lg~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          112 KLGLVYDSMGEHDKAIEAYEKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHh------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999      8888999999999999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=4.9e-13  Score=115.55  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHH----------------HHHHHHHcCCHH
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLK----------------TGKNFLRNQDLE  226 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~----------------la~~y~~~g~~~  226 (322)
                      ..++.......+.+.++..|++++...|.                ...+++.                +|.+|...|+++
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~   71 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNID----------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD   71 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHH----------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH
Confidence            33444445555778888899999888776                4455555                999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH------
Q 020735          227 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT------  300 (322)
Q Consensus       227 ~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~------  300 (322)
                      +|+..|++++++.|.      ...+++++|.++...|++++|+.+|++++++      +|..+.+++++|.+|.      
T Consensus        72 ~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           72 KAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999998      7899999999999999999999999999998      6666666666666553      


Q ss_pred             -----------------------------HcCCHHHHHHHHHHHHHhhh
Q 020735          301 -----------------------------ELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       301 -----------------------------~~gd~e~A~~~~~kAl~i~e  320 (322)
                                                   ..|++++|+.+|++++++.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence                                         34578899999999988765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=1.1e-12  Score=108.26  Aligned_cols=109  Identities=14%  Similarity=0.103  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------------PIEEKKAARGLGASLQRQGKYREAIKYHSM  274 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d------------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~k  274 (322)
                      ..+..+...|..++..|+|++|+..|.+++++.+...+            ......+++++|.+|...|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            36778889999999999999999999999999433110            222678899999999999999999999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          275 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       275 aL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++++      +|..+.+++.+|.+|..+|++++|+.+|++++++.++
T Consensus        89 al~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           89 VLKR------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhc------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            9999      8888999999999999999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.46  E-value=5.2e-13  Score=116.13  Aligned_cols=123  Identities=17%  Similarity=0.138  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-----------QDLEKAFTEFKAALEL  238 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~-----------g~~~~Al~~~~kAl~l  238 (322)
                      ....+.+.++..|++++...|.                ...+++.+|.++...           |++++|+..|++++++
T Consensus        50 ~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  113 (217)
T 2pl2_A           50 LKLGLVNPALENGKTLVARTPR----------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV  113 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence            3344778899999999998887                567888999999999           9999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       239 ~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .|.      ...++.++|.++...|++++|+..|++++++      . ..+.+++++|.+|...|++++|+..|++++++
T Consensus       114 ~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          114 NPR------YAPLHLQRGLVYALLGERDKAEASLKQALAL------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             Ccc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888      7889999999999999999999999999999      4 56788999999999999999999999999987


Q ss_pred             hhc
Q 020735          319 LES  321 (322)
Q Consensus       319 ~e~  321 (322)
                      .++
T Consensus       181 ~P~  183 (217)
T 2pl2_A          181 APK  183 (217)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.46  E-value=5.8e-12  Score=116.93  Aligned_cols=138  Identities=23%  Similarity=0.291  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..+++++...+.          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++
T Consensus       201 g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  270 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC  270 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHH
Confidence            3778899999999988776          445555677899999999999999999999999999999999988889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .++|.++...|++++|+.++++++++.+..++.+....++..+|.+|...|++++|..+|++++++.+
T Consensus       271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888899999999999999999999999999998864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=5.9e-12  Score=112.88  Aligned_cols=138  Identities=23%  Similarity=0.299  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.          .++....+.++..+|.++...|++++|+.++++++++.+..++......++.
T Consensus       198 ~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  267 (338)
T 3ro2_A          198 NFRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY  267 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            668888889998888765          3455556778999999999999999999999999999999999988899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++...|++++|+.++++++++.+..++.+....++..+|.+|...|++++|..++++++++.++
T Consensus       268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998888888899999999999999999999999999998753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.45  E-value=1.3e-12  Score=113.25  Aligned_cols=131  Identities=15%  Similarity=0.142  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcc-cCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAP-VGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~-~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      +...+.......+.+.++..|++++...+ .                ....++++|.++...|++++|+.+|++++++.|
T Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A           10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ----------------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhccCCC----------------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence            33444455555678899999999999886 3                345777799999999999999999999999888


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-------EAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a-------~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      .      ...++.++|.+|..+|++++|+.++++++++      .|...       .++.++|.++...|++++|+++|+
T Consensus        74 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  141 (228)
T 4i17_A           74 N------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK  141 (228)
T ss_dssp             S------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             c------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence            8      8899999999999999999999999999998      45434       679999999999999999999999


Q ss_pred             HHHHhhh
Q 020735          314 KYISRLE  320 (322)
Q Consensus       314 kAl~i~e  320 (322)
                      +++++.+
T Consensus       142 ~al~~~p  148 (228)
T 4i17_A          142 HATDVTS  148 (228)
T ss_dssp             HHTTSSC
T ss_pred             HHHhcCC
Confidence            9998654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.44  E-value=1.3e-11  Score=114.43  Aligned_cols=136  Identities=18%  Similarity=0.242  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .+.++..+.+++.....          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus       163 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            77888888888887665          44556677889999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|.++...|++++|+.++++++++.+..++....+.++.++|.+|...|++++|..+|++++++.+
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888899999999999999999999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.44  E-value=5.8e-12  Score=118.04  Aligned_cols=137  Identities=22%  Similarity=0.300  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++.
T Consensus       238 ~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  307 (411)
T 4a1s_A          238 DFQAAIEHHQERLRIARE----------FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY  307 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            668888889998888765          3444556678899999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++|.++...|++++|+.++++++++.+..++......++..+|.+|..+|++++|..+|++++++.+
T Consensus       308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988888899999999999999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.44  E-value=6.3e-13  Score=136.28  Aligned_cols=133  Identities=14%  Similarity=0.189  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+++.+......++.++|+..|++++...|.                ...+++++|.+|..+|++++|+.+|++++++.+
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P   74 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP   74 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4455455555666899999999999999987                677999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +      ...+++++|.++..+|++++|+++|++++++      +|..+.+++++|.+|..+|++++|+++|++++++.+
T Consensus        75 ~------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  142 (723)
T 4gyw_A           75 T------FADAYSNMGNTLKEMQDVQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP  142 (723)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            8      8899999999999999999999999999999      888899999999999999999999999999998765


Q ss_pred             c
Q 020735          321 S  321 (322)
Q Consensus       321 ~  321 (322)
                      +
T Consensus       143 ~  143 (723)
T 4gyw_A          143 D  143 (723)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.43  E-value=8.9e-12  Score=105.03  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-  286 (322)
                      .+.++..+|.++...|++++|+.++++++++.+..++......++.++|.++...|++++|++++++++++.+..++++ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            5778899999999999999999999999999999999999999999999999999999999999999999999888555 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+.++.++|.+|...|++++|..++++++++.+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.43  E-value=1.3e-11  Score=115.73  Aligned_cols=136  Identities=17%  Similarity=0.249  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .+.++..+++++...+.          .++....+.++..+|.+|...|++++|+.++++++++.+..++......++.+
T Consensus       199 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRD----------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN  268 (411)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            67788888888877655          34455577789999999999999999999999999999998888888889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|.+|...|++++|+.++++++++....++......++..+|.+|...|++++|..++++++++.+
T Consensus       269 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888878889999999999999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=3.9e-12  Score=106.38  Aligned_cols=128  Identities=20%  Similarity=0.202  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      +......++.+.++..|++++...|.                ...++..+|.+|...|++++|+..+.+++...+.    
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----   71 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPN----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----   71 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----
Confidence            33444555889999999999999887                5778999999999999999999999999998887    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                        ...++..+|.++...+++++|++.+.+++++      .|....++..+|.+|..+|++++|+++|++++++.+.
T Consensus        72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~  139 (184)
T 3vtx_A           72 --SAEAYYILGSANFMIDEKQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG  139 (184)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence              7888999999999999999999999999999      7888899999999999999999999999999987654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.43  E-value=1.5e-12  Score=111.24  Aligned_cols=130  Identities=13%  Similarity=0.007  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      ........+.+.++..|++++..                   ...+++.+|.+|...|++++|+.+|++++++.+.    
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~~~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----   69 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQDP-------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----   69 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHhCCHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence            33334444666777777766421                   2458899999999999999999999999999877    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----------EYSGSTEAYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~----------d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                        ...+++++|.++...|++++|+++|++++++.+...          ..+....+++++|.+|..+|++++|..+|+++
T Consensus        70 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           70 --LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence              678999999999999999999999999999755433          45567799999999999999999999999999


Q ss_pred             HHhhh
Q 020735          316 ISRLE  320 (322)
Q Consensus       316 l~i~e  320 (322)
                      +++.+
T Consensus       148 l~~~p  152 (213)
T 1hh8_A          148 TSMKS  152 (213)
T ss_dssp             HTTCC
T ss_pred             HHcCc
Confidence            98764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.43  E-value=1.8e-11  Score=109.63  Aligned_cols=136  Identities=18%  Similarity=0.244  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .+.++..+++++...+.          .++....+..+..+|.++...|++++|+.++++++++.+..++......++.+
T Consensus       159 ~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTA----------LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  228 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            67777888888777655          34455567789999999999999999999999999999998888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +|.++...|++++|+.++++++++.+..++......++..+|.+|...|++++|..++++++++.+
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888899999999999999999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.42  E-value=1.1e-11  Score=108.98  Aligned_cols=143  Identities=17%  Similarity=0.184  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIE  247 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~  247 (322)
                      ....+.+.++..|++++......        ...+......++..+|.+|...|++++|+.++++++++.+..  .+...
T Consensus        54 ~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  125 (283)
T 3edt_B           54 RDQNKYKEAAHLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD  125 (283)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHcccHHHHHHHHHHHHHHHHHH--------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            33346778888888888876430        012344577889999999999999999999999999998664  33456


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...++.++|.++...|++++|+.++++++++.+..  ++.+....++.++|.+|...|++++|..++++++++.+
T Consensus       126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999998775  44677889999999999999999999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.40  E-value=4.2e-12  Score=100.71  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.+|..++..|++++|+..|++++++.+.      ...+++++|.++...|++++|+.++++++++      .+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~   75 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQ   75 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------Cch
Confidence            4567889999999999999999999999999887      6789999999999999999999999999999      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.+++++|.+|...|++++|+.+|++++++.++
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            8899999999999999999999999999988754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.40  E-value=9.3e-12  Score=109.32  Aligned_cols=136  Identities=14%  Similarity=0.123  Sum_probs=114.8

Q ss_pred             HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHH
Q 020735          176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAAR  253 (322)
Q Consensus       176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~  253 (322)
                      +.++..|++++......        ...+....+.++..+|.+|...|++++|+.++++++++....  .+......++.
T Consensus        18 ~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   89 (283)
T 3edt_B           18 GSAVPLCKQALEDLEKT--------SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN   89 (283)
T ss_dssp             SSHHHHHHHHHHHHHHH--------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            45666677777665430        011234577889999999999999999999999999998776  66677889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++|.++...|++++|+++|++++++.++.  .+++....++.++|.+|...|++++|..++++++++.
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876  4457789999999999999999999999999999884

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.39  E-value=1.6e-12  Score=103.05  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .++.+|..+...|++++|+..|++++++.|.      ...+++++|.++...|++++|+..|++++++      +|....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIA   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Confidence            4678999999999999999999999999998      7899999999999999999999999999999      888889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++++|.+|...|++++|+.+|++++++.+.
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999987653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=3.7e-12  Score=110.39  Aligned_cols=129  Identities=7%  Similarity=0.032  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh-HHHH
Q 020735          171 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP-IEEK  249 (322)
Q Consensus       171 ~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~-~~~~  249 (322)
                      ...+.+.++..|++++...|.                ...+++.+|.+|...|++++|+..+++++++.|..... ....
T Consensus        54 ~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  117 (228)
T 4i17_A           54 NIKKYKEAADYFDIAIKKNYN----------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA  117 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCS----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HhhcHHHHHHHHHHHHHhCcc----------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            334678899999999988777                77889999999999999999999999999988862211 1133


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHcCCH----------------------
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDL----------------------  305 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~--~a~a~~~Lg~~y~~~gd~----------------------  305 (322)
                      .++.++|.++...|++++|+++|++++++      .|.  .+.+++++|.+|...|+.                      
T Consensus       118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  191 (228)
T 4i17_A          118 IYYLKEGQKFQQAGNIEKAEENYKHATDV------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAK  191 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhccHHHHHHHHHHHHhc------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            67999999999999999999999999998      888  889999999999999999                      


Q ss_pred             -----HHHHHHHHHHHHhhhc
Q 020735          306 -----ERAARFYDKYISRLES  321 (322)
Q Consensus       306 -----e~A~~~~~kAl~i~e~  321 (322)
                           ++|+.+|++++++.++
T Consensus       192 ~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          192 ADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhhcCCC
Confidence                 9999999999988765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.39  E-value=4e-12  Score=101.45  Aligned_cols=112  Identities=13%  Similarity=0.153  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      +...+++.......+.+.+++.|++++...|.                ...+++++|.+|...|++++|+..|++++++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   77 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD   77 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence            35566777788888999999999999999887                67789999999999999999999999999998


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  299 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y  299 (322)
                      +.      ...+++++|.++..+|++++|++.|++++++      +|....++.+|+.++
T Consensus        78 p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           78 SK------FIKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGVRNCL  125 (126)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHC
T ss_pred             hh------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHHHHhc
Confidence            88      7889999999999999999999999999999      888889999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.38  E-value=1.8e-11  Score=109.33  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEK  249 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~  249 (322)
                      ..+.+.++..+++++......        ...+......++..+|.+|...|++++|+.++++++++.+..  .+.....
T Consensus        40 ~g~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  111 (311)
T 3nf1_A           40 QGRYEVAVPLCKQALEDLEKT--------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA  111 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHH--------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            346677778888888765430        001234467788999999999999999999999999998776  6667788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .++.++|.++...|++++|+.++++++++.++.  ++.+....++.++|.+|...|++++|++++++++++.
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998876  6678889999999999999999999999999999874

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=1.7e-12  Score=123.44  Aligned_cols=128  Identities=9%  Similarity=0.032  Sum_probs=99.4

Q ss_pred             HHHHHHHHH-HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 020735          166 LRQINAALR-RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  244 (322)
Q Consensus       166 l~~~~~~l~-~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d  244 (322)
                      ...+....+ .+.++..|++++...|.                ...+++++|.++...|++++|+..|++++++.++   
T Consensus       138 g~~l~~~g~d~~eAl~~~~~al~l~P~----------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---  198 (382)
T 2h6f_A          138 RVLLKSLQKDLHEEMNYITAIIEEQPK----------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---  198 (382)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---
Confidence            333333344 78888888888887776                5667888888888888888888888888888887   


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHh
Q 020735          245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-LGDLERA-----ARFYDKYISR  318 (322)
Q Consensus       245 ~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~-~gd~e~A-----~~~~~kAl~i  318 (322)
                         ...+++++|.++..+|++++|+.+|+++|++      +|....+|+++|.++.. .|.+++|     +.+|++++++
T Consensus       199 ---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          199 ---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             ---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence               7778888888888888888888888888888      77778888888888888 4444677     4888888877


Q ss_pred             hhc
Q 020735          319 LES  321 (322)
Q Consensus       319 ~e~  321 (322)
                      .++
T Consensus       270 ~P~  272 (382)
T 2h6f_A          270 VPH  272 (382)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=3.6e-11  Score=107.39  Aligned_cols=140  Identities=19%  Similarity=0.250  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKK  250 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~  250 (322)
                      .+.+.++..+++++......        ...+......++..+|.+|...|++++|+.++++++++....  ++......
T Consensus        83 g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (311)
T 3nf1_A           83 NKYKDAANLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK  154 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            36677888888888775430        012334567789999999999999999999999999998665  55666888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++.++|.++...|++++|++++++++++.++.  ++.+....++..+|.+|...|++++|..++++++++.+
T Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876  55777888999999999999999999999999998653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.36  E-value=4.1e-12  Score=105.86  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                ....++.+|.+|...|++++|+.+|++++++.+.      ...++.
T Consensus        25 ~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~   82 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYA   82 (177)
T ss_dssp             --CCCCHHHHHHHHHCCS----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence            445566677777776665                4568899999999999999999999999999987      678899


Q ss_pred             HHHHH-HHHcCCH--HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGAS-LQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~-~~~~gd~--~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.+ +...|++  ++|+.++++++++      .|....+++++|.+|...|++++|..+|++++++.++
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKALAL------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            99999 8899999  9999999999999      7777889999999999999999999999999987654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.36  E-value=4.6e-11  Score=103.74  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN------------  241 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~------------  241 (322)
                      +.+.++..+++++...+.         ...+.......+..+|.+|...|++++|+.+|++++++.+.            
T Consensus        53 ~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  123 (258)
T 3uq3_A           53 EYETAISTLNDAVEQGRE---------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK  123 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcc---------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence            567777777777776665         11122333677778888888888888888888888885332            


Q ss_pred             --------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          242 --------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       242 --------~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                              ....+....++..+|.++...|++++|+.+|++++++      .+....++.++|.+|...|++++|..+++
T Consensus       124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                    1135556677888888888888888888888888877      56666778888888888888888888888


Q ss_pred             HHHHhhh
Q 020735          314 KYISRLE  320 (322)
Q Consensus       314 kAl~i~e  320 (322)
                      +++++.+
T Consensus       198 ~al~~~~  204 (258)
T 3uq3_A          198 KAIEKDP  204 (258)
T ss_dssp             HHHHHCT
T ss_pred             HHHHhCH
Confidence            8877654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.35  E-value=1.4e-11  Score=93.91  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.+|..+...|++++|+..|+++++..+.      ...++.++|.++...|++++|+.++++++++      .+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------Ccc
Confidence            4567888999999999999999999999998876      6778999999999999999999999999998      677


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...++.++|.+|...|++++|..++++++++.++
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            7889999999999999999999999999987543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=3e-11  Score=93.68  Aligned_cols=121  Identities=26%  Similarity=0.421  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..+++++...+.                ....+..+|.++...|++++|+..++++++..+.      ...++
T Consensus        15 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~   72 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPR----------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAW   72 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCc----------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHH
Confidence            3566777888888776554                3457788999999999999999999999998776      56788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..++++++++.++
T Consensus        73 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           73 YNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999988      5666788999999999999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=1.7e-11  Score=107.95  Aligned_cols=124  Identities=14%  Similarity=0.044  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...+.            +......+++.+|.++...|++++|+..|++++++.+.      ...++.
T Consensus        20 ~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~   81 (275)
T 1xnf_A           20 QQEVILARMEQILASRAL------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFN   81 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCC------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHH
T ss_pred             hHHHHHHHHHHHHhcccc------------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHH
Confidence            566778888888775322            23446788999999999999999999999999999877      678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++...|++++|+.+|++++++      .|....++.++|.+|...|++++|..+|++++++.++
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhc------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998      6767889999999999999999999999999987653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.34  E-value=2.7e-11  Score=98.48  Aligned_cols=132  Identities=18%  Similarity=0.162  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+...........+.+.++..|++++...+.                ....++.+|.++...|++++|+..+++++++.+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            4444444555555788899999999988766                466888999999999999999999999999987


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY--GAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~--~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .      ...+++++|.++...|++++|+.+|++++++      .+....++  ..++..+...|++++|+..++++..+
T Consensus        79 ~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           79 K------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            7      6788999999999999999999999999988      55545555  55555688999999999999998877


Q ss_pred             hh
Q 020735          319 LE  320 (322)
Q Consensus       319 ~e  320 (322)
                      .+
T Consensus       147 ~~  148 (166)
T 1a17_A          147 VD  148 (166)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=2.8e-11  Score=99.44  Aligned_cols=120  Identities=22%  Similarity=0.220  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                ....+..+|.++...|++++|+.+++++++..+.      ...++.
T Consensus        57 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  114 (186)
T 3as5_A           57 AVDRGTELLERSLADAPD----------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRF  114 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHH
Confidence            567778888888877655                4567888999999999999999999999998776      567899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++...|++++|+++++++++.      .+....++..+|.+|...|++++|..++++++++.++
T Consensus       115 ~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  176 (186)
T 3as5_A          115 RLGVALDNLGRFDEAIDSFKIALGL------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG  176 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999988      6666889999999999999999999999999987654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.34  E-value=2.6e-11  Score=94.00  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=95.7

Q ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          205 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       205 ~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      .......++.+|..+...|++++|+..++++++..+.      ...++.++|.++...|++++|+.+++++++.      
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICI------   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc------
Confidence            4456778899999999999999999999999998776      5778999999999999999999999999998      


Q ss_pred             CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          285 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       285 ~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+....+++.+|.+|...|++++|..+|++++++.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            6667889999999999999999999999999987653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=3e-11  Score=104.91  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                ....+..+|.++...|++++|+..|++++++.+.      ...++.
T Consensus       120 ~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~  177 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVNPE----------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYS  177 (258)
T ss_dssp             HHHHHHHHHHHHHHCCHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcc----------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHH
Confidence            455555566665555444                6778899999999999999999999999999887      678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ++|.++...|++++|+.++++++++      .+..+.++..+|.+|...|++++|..+|++++++.
T Consensus       178 ~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          178 NRAAALAKLMSFPEAIADCNKAIEK------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998      77778999999999999999999999999999987

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.34  E-value=1.2e-11  Score=96.88  Aligned_cols=105  Identities=14%  Similarity=0.073  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .++.+|..++..|++++|+..|+++++..+.   ......+++++|.++...|++++|+.+|+++++..+   +.+..+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP---THDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC---CCcccHH
Confidence            4678899999999999999999999998775   222347899999999999999999999999998821   2222388


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++.+|.+|..+|++++|+.+|+++++..++
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999987654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.33  E-value=1.1e-12  Score=107.76  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=86.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q 020735          214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  293 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~  293 (322)
                      .+|.++...|++++|+..+++++...++      ...+++++|.+|+..|+|++|+++|++++++      +|..+.+++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~------~p~~~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQ------KSIKGFYFAKLYYEAKEYDLAKKYICTYINV------QERDPKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHH------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Confidence            3788888999999999999999998887      8888999999999999999999999999999      888899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          294 AIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       294 ~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.+|...|++++|+.+|++++++.++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~   97 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPT   97 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.33  E-value=4.1e-11  Score=93.01  Aligned_cols=107  Identities=18%  Similarity=0.361  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCCc
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYS  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~-~d~~  286 (322)
                      .+..++.+|..+...|++++|+.+|+++++..+.      ...+++++|.++...|++++|+.++++++++.+.. .+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            4567889999999999999999999999998876      57889999999999999999999999999997654 2233


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ....+++++|.+|...|++++|..+|++++++.+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3478999999999999999999999999998654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=4e-11  Score=98.46  Aligned_cols=123  Identities=14%  Similarity=0.122  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+.++..+++++...+.                ....+..+|.++...|++++|+.+++++++..+.      ..
T Consensus        19 ~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~   76 (186)
T 3as5_A           19 AKAGRYSQAVMLLEQVYDADAF----------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NV   76 (186)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHhcCHHHHHHHHHHHHHhCcc----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CH
Confidence            3334667777778777766554                3567889999999999999999999999998776      67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .++..+|.++...|++++|+++++++++.      .+....++..+|.+|...|++++|..+++++++..+
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEA------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence            78999999999999999999999999998      666778999999999999999999999999998754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.33  E-value=2.6e-11  Score=98.59  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      ...+..++.+|..++..|++++|+..|++++++.+.      ...++.++|.++...|++++|+.++++++++      .
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~   77 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------D   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C
Confidence            346778899999999999999999999999998887      6788999999999999999999999999999      7


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +....+++++|.+|...|++++|..+|++++++.++
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            777889999999999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.33  E-value=2e-11  Score=105.33  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH----------------HHHHHHHcCCHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------LGASLQRQGKYREAIKYH  272 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~----------------LG~~~~~~gd~~eAi~~~  272 (322)
                      +..++..|..++..|++++|+..|++++++.|.      ...++++                +|.+|...|++++|+..|
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            446778999999999999999999999999988      7888888                999999999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          273 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       273 ~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++++++      +|..+.+++++|.+|...|++++|+.+|++++++.++
T Consensus        78 ~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~  120 (208)
T 3urz_A           78 KELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD  120 (208)
T ss_dssp             HHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            999999      8888999999999999999999999999999987654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.32  E-value=2.1e-11  Score=108.06  Aligned_cols=142  Identities=14%  Similarity=0.119  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+...........+.+.++..|++++...|..             .....+++.+|.+|+..|++++|+..|++++++.|
T Consensus        17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p   83 (261)
T 3qky_A           17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ   83 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence            34444555555668889999999999987650             01366889999999999999999999999999877


Q ss_pred             hCCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCCchHHHHH--------------HHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQR--------QGKYREAIKYHSMVLQISEREGEYSGSTEAY--------------GAIADC  298 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~--------~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~--------------~~Lg~~  298 (322)
                      ...   ....+++.+|.++..        .|++++|+..|+++++..+   +.+....+.              +.+|.+
T Consensus        84 ~~~---~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~~~~~~~~~~~~~~~la~~  157 (261)
T 3qky_A           84 IDP---RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP---NHELVDDATQKIRELRAKLARKQYEAARL  157 (261)
T ss_dssp             TCT---THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT---TCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCc---hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc---CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            532   256789999999999        9999999999999998832   222333444              899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhhc
Q 020735          299 YTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       299 y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |...|++++|+..|+++++..++
T Consensus       158 ~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          158 YERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHccCHHHHHHHHHHHHHHCCC
Confidence            99999999999999999987653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.32  E-value=2.9e-11  Score=112.54  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+.+.........+.+.++..|++++...+....... +.........+.+++++|.+|...|++++|+.+|++++++.+
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  227 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS  227 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4455555666666889999999999998876211000 000001122357889999999999999999999999999988


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRL  319 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A-~~~~~kAl~i~  319 (322)
                      .      ...+++++|.+|..+|++++|+.+|++++++      .|....++.++|.++..+|++++| ...|++.++.+
T Consensus       228 ~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          228 N------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7      7889999999999999999999999999999      788889999999999999999999 66788887654


Q ss_pred             h
Q 020735          320 E  320 (322)
Q Consensus       320 e  320 (322)
                      .
T Consensus       296 ~  296 (336)
T 1p5q_A          296 A  296 (336)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.32  E-value=1e-11  Score=97.12  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ....+++.+|..+...|++++|+..|+++++..+.      ...+++++|.++...|++++|+.++++++++      .+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~   81 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQL------EP   81 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH------CT
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CC
Confidence            36778899999999999999999999999998776      5788999999999999999999999999998      67


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ....+++++|.+|...|++++|..+|++++++.+.
T Consensus        82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            77889999999999999999999999999987543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.31  E-value=8.8e-11  Score=115.17  Aligned_cols=145  Identities=9%  Similarity=-0.054  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--  242 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~-~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--  242 (322)
                      ......++++++++..|++++.....         ..++ ....+.++.++|.+|..+|+|++|+.++++++++....  
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~---------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEP---------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTT---------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHH---------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            33334444678899999999987655         2333 34567789999999999999999999999999998764  


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .+.+..+.++++||.+|..+|+|++|+.+|++|+++.+..  .++|.......+++.++.+++.+++|...|.++.+.+
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667789999999999999999999999999999999985  5788899999999999999999999999999997755

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.30  E-value=1.5e-11  Score=114.44  Aligned_cols=108  Identities=11%  Similarity=0.150  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d---------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .+..+..+|.+|+..|++++|+..|++++++.+...+         ......+++++|.+|..+|+|++|+.+|++++++
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6778899999999999999999999999999887431         1223678999999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          279 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       279 ~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                            .|..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       226 ------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  262 (336)
T 1p5q_A          226 ------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  262 (336)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence                  7888999999999999999999999999999987653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.29  E-value=2.8e-11  Score=103.01  Aligned_cols=110  Identities=20%  Similarity=0.233  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~----------~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      ...+..+..+|..++..|+|++|+..|++++++.+...+.          .....++.++|.++...|++++|+.+++++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3466788899999999999999999999999987764321          112478999999999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       276 L~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++      .+....+++++|.+|..+|++++|+.+|++++++.++
T Consensus       115 l~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A          115 LKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHh------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            999      7778899999999999999999999999999987653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.6e-11  Score=96.67  Aligned_cols=105  Identities=19%  Similarity=0.232  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.+|..++..|++++|+.+|++++++.+.   ......++.++|.++...|++++|+.++++++++      .+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------DGG   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------Ccc
Confidence            5678889999999999999999999999987654   2334788999999999999999999999999998      666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...+++++|.+|...|++++|..+|++++++.++
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            7889999999999999999999999999987654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.28  E-value=5.5e-10  Score=103.64  Aligned_cols=136  Identities=11%  Similarity=-0.033  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.           ++....+.++..+|.++...|++++|...+++++++.+..++......++.
T Consensus        29 ~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           29 NPDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             CHHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCC-----------CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            445566666666655432           122234445666777777777777777777777777777766666666677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~--~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++|.++...|++++|+.++++++++.++.++.  +....++.++|.+|...|++++|..++++++++.+
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            77777777777777777777777776665543  45566677777777777777777777777776543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=8.4e-11  Score=90.25  Aligned_cols=102  Identities=26%  Similarity=0.461  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....++.+|..+...|++++|+..++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~   75 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPN   75 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCc
Confidence            3567888999999999999999999999998775      5678999999999999999999999999988      666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...++..+|.+|...|++++|..++++++++.++
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            6788999999999999999999999999987653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.27  E-value=1.3e-10  Score=98.67  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~-g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      +.+.++..+++++...+.                ....+..+|.++... |++++|+..++++++ .+   .......++
T Consensus        57 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~---~~~~~~~~~  116 (225)
T 2vq2_A           57 VNDKAQESFRQALSIKPD----------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP---TYPTPYIAN  116 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST---TCSCHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc---CCcchHHHH
Confidence            667888888888887665                455788899999999 999999999999988 21   122256788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .++|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..+++++++..+
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAA------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999988      666678899999999999999999999999988765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=1e-11  Score=96.95  Aligned_cols=89  Identities=17%  Similarity=0.185  Sum_probs=78.0

Q ss_pred             HcCCHHHHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 020735          221 RNQDLEKAFTEFKAALEL---AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  297 (322)
Q Consensus       221 ~~g~~~~Al~~~~kAl~l---~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~  297 (322)
                      ..|++++|+.+|++++++   .+.      ...++.++|.+|...|++++|+.+|++++++      .|..+.+++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHH
Confidence            368999999999999998   566      8899999999999999999999999999999      7778899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          298 CYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       298 ~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +|..+|++++|+.+++++++..++
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999987654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=5.2e-11  Score=102.82  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..+++++...+.                ....+..+|.++...|++++|+.+++++++..+.      ...++
T Consensus       105 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~  162 (243)
T 2q7f_A          105 EMYKEAKDMFEKALRAGME----------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEAR  162 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCC----------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHH
Confidence            3677888889998887765                3557888999999999999999999999998876      67789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..+|++++++.++
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          163 FQFGMCLANEGMLDEALSQFAAVTEQ------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            99999999999999999999999988      6667789999999999999999999999999987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.26  E-value=1.1e-11  Score=93.86  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch--H
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--S  288 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~--~  288 (322)
                      .++.+|.++...|++++|+..|++++++.+.      ...+++++|.++...|++++|+.++++++++      .+.  .
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~   75 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINV------IEDEYN   75 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------SCCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------Ccccch
Confidence            5667899999999999999999999998876      5778999999999999999999999999988      666  7


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~-gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..++.++|.+|... |++++|.+++++++...+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            88999999999999 9999999999999877653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.26  E-value=1.1e-10  Score=100.68  Aligned_cols=119  Identities=16%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                ...++..+|.++...|++++|+..++++++..+.      ...++.
T Consensus        72 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  129 (243)
T 2q7f_A           72 ELERALAFYDKALELDSS----------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------NGDLFY  129 (243)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------SHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCc----------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            566778888888887665                4667888999999999999999999999998876      577899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|+.+++++++..+
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  190 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVEL------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP  190 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999988      666778999999999999999999999999998754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.6e-10  Score=90.70  Aligned_cols=120  Identities=10%  Similarity=0.044  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+.+.+.......+.+.++..|++++...|.                ....+.++|.+|...|++++|+..+++++++.+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p   69 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP   69 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            4455555666666889999999999998877                567899999999999999999999999999988


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  302 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~  302 (322)
                      .      ...+++++|.++...|++++|+.+|++++++.+...+.|....++..++.+...+
T Consensus        70 ~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           70 N------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             C------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            7      7889999999999999999999999999999665555588888888888877654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.25  E-value=7.5e-11  Score=108.92  Aligned_cols=127  Identities=15%  Similarity=0.214  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH-----
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-----  247 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~-----  247 (322)
                      .+.+.++..|++++...|.                ...++..+|.+|...|++++|+..|++++++.+...+...     
T Consensus       113 g~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  176 (365)
T 4eqf_A          113 ENEQAAIVALQRCLELQPN----------------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS  176 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred             CCHHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence            3566777777777776655                3556677777777777777777777777776554221110     


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735          248 -----------------------------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  292 (322)
Q Consensus       248 -----------------------------------~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~  292 (322)
                                                         ...++.++|.++...|++++|+++|++++++      .|..+.++
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~  250 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLW  250 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHH
Confidence                                               3457888899999999999999999999888      66677888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          293 GAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .++|.+|...|++++|+.+|++++++.++
T Consensus       251 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          251 NRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            88999999999999999999988876543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.25  E-value=1.5e-11  Score=116.85  Aligned_cols=120  Identities=8%  Similarity=0.022  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~-~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      +.+.++..|++++...|.                ...+++++|.++...|+ +++|+..|++++++.++      ...++
T Consensus       112 ~~~~Al~~~~~al~l~P~----------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~  169 (382)
T 2h6f_A          112 RSERAFKLTRDAIELNAA----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVW  169 (382)
T ss_dssp             CCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             ChHHHHHHHHHHHHhCcc----------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHH
Confidence            567799999999999988                67799999999999997 99999999999999998      88999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++|.++..+|++++|+.+|++++++      +|....+|+++|.++..+|++++|+.+|++++++.+.
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~l------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~  232 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  232 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999      8889999999999999999999999999999988654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.25  E-value=1.3e-11  Score=108.87  Aligned_cols=97  Identities=13%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ++..+|.+|...|++++|+.+|++++++.+.      ...++.++|.+|...|++++|+.+|++++++      .+....
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~  143 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPK  143 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHH
Confidence            4455555555555555555555555555444      3345555555555555555555555555544      444445


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      +++++|......+++++|+.+|++++++.
T Consensus       144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A          144 VFYELGQAYYYNKEYVKADSSFVKVLELK  172 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55555522222335555555555555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.25  E-value=3.9e-11  Score=108.07  Aligned_cols=126  Identities=21%  Similarity=0.294  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh---HHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---IEEKK  250 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~---~~~~~  250 (322)
                      +.+.++..+++++...+.                ....+..+|.++...|++++|+..+++++++.+..++.   .....
T Consensus       174 ~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  237 (330)
T 3hym_B          174 NSKLAERFFSQALSIAPE----------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP  237 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred             hHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence            556677777777776655                45678889999999999999999999999988665443   22456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++.++|.++...|++++|+.++++++++      .+....++.++|.+|...|++++|.++|++++++.++
T Consensus       238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          238 LLNNLGHVCRKLKKYAEALDYHRQALVL------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhh------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            8889999999999999999999999988      6667788999999999999999999999999876653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.24  E-value=1.3e-10  Score=107.35  Aligned_cols=130  Identities=13%  Similarity=0.101  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+.++..|++++...|.                ...+++.+|.+|...|++++|+..|++++++.+.      ..
T Consensus        76 ~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~  133 (365)
T 4eqf_A           76 LKEGDLPVTILFMEAAILQDPG----------------DAEAWQFLGITQAENENEQAAIVALQRCLELQPN------NL  133 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CH
Confidence            3344677788899999988776                5678899999999999999999999999999887      67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC--------------------------------------ch--HH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--------------------------------------SG--ST  289 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~--------------------------------------~~--~a  289 (322)
                      .++.++|.+|...|++++|+.+|++++++.+.....                                      |.  .+
T Consensus       134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  213 (365)
T 4eqf_A          134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP  213 (365)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence            889999999999999999999999999875442211                                      11  46


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .++.++|.+|...|++++|+.+|++++++.++
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  245 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE  245 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            78889999999999999999999999887543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.24  E-value=4.8e-11  Score=116.17  Aligned_cols=127  Identities=7%  Similarity=-0.069  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---------QDLEKAFTEFKAAL  236 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~---------g~~~~Al~~~~kAl  236 (322)
                      ........+.+.++..|++++...|.                 ..++..+|.+|...         |++++|+..|++++
T Consensus       144 g~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al  206 (474)
T 4abn_A          144 GEVYWKKGDVTSAHTCFSGALTHCKN-----------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV  206 (474)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTCCC-----------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCC-----------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence            33344444778888889988876643                 36888999999999         99999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHHHcCCH
Q 020735          237 ELAQNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDL  305 (322)
Q Consensus       237 ~l~~~~~d~~~~~~a~~~LG~~~~~~--------gd~~eAi~~~~kaL~l~~~~~d~~---~~a~a~~~Lg~~y~~~gd~  305 (322)
                      ++.+.      ...+++++|.+|...        |++++|+.+|++++++      .|   ..+.+++++|.+|..+|++
T Consensus       207 ~~~p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~  274 (474)
T 4abn_A          207 QMDVL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESY  274 (474)
T ss_dssp             HHCTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCH
Confidence            99988      788999999999999        9999999999999999      77   8899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 020735          306 ERAARFYDKYISRLES  321 (322)
Q Consensus       306 e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++|++++++.++
T Consensus       275 ~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          275 GEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999987654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=1.1e-10  Score=115.44  Aligned_cols=124  Identities=14%  Similarity=0.042  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+++++.|++++...+.                ...+++.+|.+|...|++++|+.+|++++++.+.      ..
T Consensus        34 ~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~   91 (568)
T 2vsy_A           34 LGMGDTTAGEMAVQRGLALHPG----------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HP   91 (568)
T ss_dssp             HHHTCHHHHHHHHHHHHTTSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CH
Confidence            3344778899999999998776                5678899999999999999999999999999887      68


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhc
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDLERAARFYDKYISRLES  321 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~---gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+++++|.+|...|++++|+++|++++++      .+....++.++|.+|..+   |++++|.++|+++++..++
T Consensus        92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A           92 GIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            89999999999999999999999999999      777789999999999999   9999999999999987653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.24  E-value=1.6e-10  Score=106.10  Aligned_cols=128  Identities=17%  Similarity=0.150  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH
Q 020735          168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  247 (322)
Q Consensus       168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~  247 (322)
                      ......+.+.++..|++++...+.          ..    ....+..+|.+|...|++++|+..|++++++.+.      
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~~~p~----------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------  249 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVRLDPT----------SI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------  249 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTT----------SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred             HHhhcccHHHHHHHHHHHHHhCcC----------cc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------
Confidence            334445778888899999887765          10    3557888999999999999999999999999877      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...++.++|.++...|++++|+.+|++++++      .|....+++++|.+|...|++++|..+|++++++.++
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            6788999999999999999999999999998      7777899999999999999999999999999988654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.24  E-value=4e-10  Score=104.57  Aligned_cols=139  Identities=13%  Similarity=0.060  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh--HHH
Q 020735          171 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEE  248 (322)
Q Consensus       171 ~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~--~~~  248 (322)
                      ...+.+.+...+++++...+.          .++....+.++.++|.++...|++++|+.++++++++.+..++.  ...
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           65 CKGELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            334677788888888888776          44555567788999999999999999999999999999887765  557


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..++.++|.++...|++++|+.++++++++.+..++.. ...++.++|.++...|++++|..++++++++.+
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            77899999999999999999999999999977655433 567899999999999999999999999998753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.24  E-value=5.2e-11  Score=115.50  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  277 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d---------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~  277 (322)
                      ..+..+..+|..++..|+|++|+..|++++++.+...+         ......+++++|.+|..+|+|++|+.+|+++++
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            46778899999999999999999999999999987431         222367899999999999999999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          278 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       278 l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +      ++..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       346 ~------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~  383 (457)
T 1kt0_A          346 L------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  383 (457)
T ss_dssp             H------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             c------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9      7888999999999999999999999999999987543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.23  E-value=9.8e-11  Score=102.14  Aligned_cols=119  Identities=16%  Similarity=0.165  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHhCCChHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE--LAQNVKDPIEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~--l~~~~~d~~~~~~a  251 (322)
                      +.+.+++.+++++...+.                ....+..+|.+|...|++++|+++++++++  ..+.      ...+
T Consensus        86 ~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~  143 (252)
T 2ho1_A           86 EPKLADEEYRKALASDSR----------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------RSRV  143 (252)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------HHHH
T ss_pred             CHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------cHHH
Confidence            678888888888887665                456788899999999999999999999988  3333      6778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.++|.++...|++++|+.+++++++.      .+....++..+|.+|...|++++|..+++++++..+
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  206 (252)
T 2ho1_A          144 FENLGLVSLQMKKPAQAKEYFEKSLRL------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG  206 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999988      666678899999999999999999999999987654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=1.2e-11  Score=125.82  Aligned_cols=126  Identities=17%  Similarity=0.072  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      ........+.++++..|++++...+.                ...+++++|.+|...|++++|+..|++++++.+.    
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~----  499 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERVGW----------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG----  499 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccCcc----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence            33444444788999999999998887                6778999999999999999999999999999998    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                        ...+++++|.++..+|++++ +++|++++++      +|..+.+++++|.+|..+|++++|+.+|++++++.+
T Consensus       500 --~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  565 (681)
T 2pzi_A          500 --ELAPKLALAATAELAGNTDE-HKFYQTVWST------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR  565 (681)
T ss_dssp             --CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred             --ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence              78899999999999999999 9999999999      888899999999999999999999999999987654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.23  E-value=9.6e-11  Score=105.50  Aligned_cols=130  Identities=13%  Similarity=0.138  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+.++..|++++...+.                ....+..+|.+|...|++++|+..++++++..+.      ..
T Consensus       136 ~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~  193 (330)
T 3hym_B          136 AVESEHDQAMAAYFTAAQLMKG----------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DP  193 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTT----------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CH
T ss_pred             HHccCHHHHHHHHHHHHHhccc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------Ch
Confidence            3334778888889999888765                3446777999999999999999999999998877      67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY---SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~---~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .++.++|.++...|++++|+.++++++++.+..++.   +..+.++.++|.+|...|++++|..+|++++++.++
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            889999999999999999999999999997665543   445678999999999999999999999999987653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.23  E-value=3.7e-11  Score=118.91  Aligned_cols=120  Identities=15%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.++++..|++++...+.                ...+++.+|.+|...|++++|+++|++++++.+.      ...+++
T Consensus         4 ~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~   61 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQ----------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVA   61 (568)
T ss_dssp             -----------------C----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            445677777777776665                5678899999999999999999999999999887      688999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.+|..+|++++|+++|++++++      .+....+++++|.+|...|++++|.++|++++++.++
T Consensus        62 ~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           62 RLGRVRWTQQRHAEAAVLLQQASDA------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999      7777899999999999999999999999999987653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.22  E-value=2.3e-10  Score=112.23  Aligned_cols=110  Identities=13%  Similarity=-0.012  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCc
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYS  286 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~  286 (322)
                      ..+..+..+..+|+|++|+..+++++++....  .+....+.++.+||.+|..+|+|++|+.++++++++.++.  .++|
T Consensus       311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  390 (490)
T 3n71_A          311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA  390 (490)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            44556677889999999999999999998875  4567789999999999999999999999999999999885  5788


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+..+++||.+|..+|++++|..+|++|+++.+
T Consensus       391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.21  E-value=1.3e-10  Score=109.82  Aligned_cols=109  Identities=16%  Similarity=0.147  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  276 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~----------d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL  276 (322)
                      ..+..+..+|..++..|+|++|+..|++++++.+...          .......++.++|.+|..+|+|++|++++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3456788999999999999999999999999655421          233467889999999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       277 ~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++      .+..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       301 ~~------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          301 EI------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             TT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             Hh------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            98      7788999999999999999999999999999988654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.21  E-value=2.7e-10  Score=102.37  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..+++++...+.                ....+..+|.+|...|++++|+..++++++..+.      ...++
T Consensus       152 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~  209 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMNPN----------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLW  209 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHH
Confidence            3667888888888887765                4568889999999999999999999999998876      67789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+|.++...|++++|+.++++++++      .+....++..+|.+|...|++++|..+|++++++.++
T Consensus       210 ~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          210 NKLGATLANGNRPQEALDAYNRALDI------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999998      6777889999999999999999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.21  E-value=2.2e-10  Score=97.29  Aligned_cols=102  Identities=13%  Similarity=0.058  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-  286 (322)
                      ....+..+|.++...|++++|+.+++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+ 
T Consensus       112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~  179 (225)
T 2vq2_A          112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSR------VEV  179 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HCS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence            4668889999999999999999999999998876      5778999999999999999999999999988      55 


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ....++..++.++...|++++|..+++.+++..++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence            56677889999999999999999999998876654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.21  E-value=1.9e-10  Score=100.28  Aligned_cols=120  Identities=15%  Similarity=0.072  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHhHhh--hcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          174 RRQAKIESYAPSLS--YAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~--~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      +.+.++..+++++.  ..+.                ....+..+|.++...|++++|+.+++++++..+.      ...+
T Consensus       120 ~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~  177 (252)
T 2ho1_A          120 RYEEAYQRLLEASQDTLYPE----------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSV  177 (252)
T ss_dssp             CHHHHHHHHHHHTTCTTCTT----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHH
T ss_pred             HHHHHHHHHHHHHhCccCcc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHH
Confidence            44666666666665  2222                5678889999999999999999999999998876      5778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +..+|.++...|++++|+.+++++++.      .+....++..++.+|...|++++|..++++++++.++
T Consensus       178 ~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          178 ALEMADLLYKEREYVPARQYYDLFAQG------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999887      6666788999999999999999999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.21  E-value=6.8e-11  Score=107.09  Aligned_cols=101  Identities=11%  Similarity=0.058  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +..+..+|..++..|++++|+..|++++++.+.      ...+++++|.+|...|++++|+..+++++++      .+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC
Confidence            457788999999999999999999999999887      7889999999999999999999999999988      7888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+++++|.+|..+|++++|+.+|++++++.++
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            899999999999999999999999999987653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.19  E-value=4.1e-10  Score=98.97  Aligned_cols=124  Identities=15%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...+.                ...+++.+|.+|...|++++|+..|++++++.+.      ......
T Consensus        92 ~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~  149 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPT----------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN------DPFRSL  149 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcc----------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------ChHHHH
Confidence            556666666666665544                2345666667777777777777777776666554      222222


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHHc-CCCc----hHHHHHHHHHHHHHHc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQI--------------------------SERE-GEYS----GSTEAYGAIADCYTEL  302 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l--------------------------~~~~-~d~~----~~a~a~~~Lg~~y~~~  302 (322)
                      .++ .....|++++|+..+++++..                          ..+. ...+    ..+.++..+|.+|...
T Consensus       150 ~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  228 (275)
T 1xnf_A          150 WLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL  228 (275)
T ss_dssp             HHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc
Confidence            222 224446666666666554432                          1110 1111    2267899999999999


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 020735          303 GDLERAARFYDKYISRLE  320 (322)
Q Consensus       303 gd~e~A~~~~~kAl~i~e  320 (322)
                      |++++|..+|++++++.+
T Consensus       229 g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          229 GDLDSATALFKLAVANNV  246 (275)
T ss_dssp             TCHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHhCCc
Confidence            999999999999998754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=1.1e-10  Score=108.83  Aligned_cols=100  Identities=19%  Similarity=0.289  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...+..+|.+|...|++++|+..|++++++.|.      ...++.++|.++...|++++|+++|++++++      .|..
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~  304 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPTH  304 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------Cccc
Confidence            345566777777777777777777777776555      4556777777777777777777777777776      5555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.++.++|.+|...|++++|..+|++++++.+
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  336 (388)
T 1w3b_A          305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP  336 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            66777777777777777777777777766543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.19  E-value=1.9e-10  Score=101.82  Aligned_cols=136  Identities=12%  Similarity=0.148  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHh
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR--------NQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~--------~g~~~~Al~~~~kAl~l~~~  241 (322)
                      ....+.+.++..|++++...|..           +  ....+++.+|.+++.        .|++++|+..|+++++..|.
T Consensus        63 ~~~~~~~~A~~~~~~~l~~~p~~-----------~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           63 YQNKEYLLAASEYERFIQIYQID-----------P--RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC-----------T--THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhCcHHHHHHHHHHHHHHCCCC-----------c--hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            33447788999999999987751           1  145688999999999        99999999999999998886


Q ss_pred             CCChHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc--------
Q 020735          242 VKDPIEE-----------KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------  302 (322)
Q Consensus       242 ~~d~~~~-----------~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~--------  302 (322)
                      .......           ...++++|.+|...|++++|+..|+++++..+   +.+....+++.+|.+|..+        
T Consensus       130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~  206 (261)
T 3qky_A          130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRAR  206 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhc
Confidence            4332211           11238999999999999999999999998722   2333788999999999987        


Q ss_pred             --CCHHHHHHHHHHHHHhhhc
Q 020735          303 --GDLERAARFYDKYISRLES  321 (322)
Q Consensus       303 --gd~e~A~~~~~kAl~i~e~  321 (322)
                        |++++|+.+|+++++..++
T Consensus       207 ~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          207 QPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccchHHHHHHHHHHHHHHCCC
Confidence              9999999999999987654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.19  E-value=1.6e-10  Score=95.00  Aligned_cols=138  Identities=12%  Similarity=0.074  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCC--CCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          157 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSR--IPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA  234 (322)
Q Consensus       157 ~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~--~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~k  234 (322)
                      .....+.+.+.......+.+.++..|.+++...+....  .................++++|.+|...|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34456677777777777899999999999988432000  0000000000223567889999999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH-HHHHHHHHHHHHcCCHH
Q 020735          235 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLE  306 (322)
Q Consensus       235 Al~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a-~a~~~Lg~~y~~~gd~e  306 (322)
                      ++++.|.      ...+++.+|.+|..+|++++|+.+|++++++      .|... .+...++.+....++++
T Consensus        89 al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           89 VLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999888      7889999999999999999999999999999      77666 66777887777665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.19  E-value=3.7e-10  Score=102.48  Aligned_cols=132  Identities=20%  Similarity=0.159  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +...+.......+.+.++..|++++...|.                ...+++.+|.++...|++++|+..+++++++.+.
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   69 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD   69 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            334444455555788899999999988776                4668899999999999999999999999999877


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHH------------HHHHHHcCCHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAI------------ADCYTELGDLE  306 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~---~~a~a~~~L------------g~~y~~~gd~e  306 (322)
                            ...++..+|.++...|++++|+..|++++++      .+   ....++..+            |.++...|+++
T Consensus        70 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           70 ------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             ------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence                  6688999999999999999999999999988      66   667777666            79999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 020735          307 RAARFYDKYISRLES  321 (322)
Q Consensus       307 ~A~~~~~kAl~i~e~  321 (322)
                      +|++.++++++..+.
T Consensus       138 ~A~~~~~~~~~~~~~  152 (359)
T 3ieg_A          138 AAITFLDKILEVCVW  152 (359)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999987553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.18  E-value=3.8e-10  Score=108.99  Aligned_cols=101  Identities=10%  Similarity=0.054  Sum_probs=92.6

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHH
Q 020735          220 LRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAI  295 (322)
Q Consensus       220 ~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~L  295 (322)
                      ...|+|++|+..+++++++..+.  .+....+.++.+||.+|..+|+|++|+.++++++++.++.  .++|..+..+++|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            34689999999999999998874  4567788999999999999999999999999999999985  5688899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          296 ADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       296 g~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      |.+|..+|++++|..+|++|+++.+
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.18  E-value=1.7e-10  Score=107.61  Aligned_cols=120  Identities=22%  Similarity=0.237  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...|.                ....+..+|.++...|++++|+..|+++++..|.      ...++.
T Consensus       116 ~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~  173 (388)
T 1w3b_A          116 DMEGAVQAYVSALQYNPD----------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWS  173 (388)
T ss_dssp             CSSHHHHHHHHHHHHCTT----------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence            345555555555555444                3445667778888888888888888888777666      567778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++...|++++|+.+|++++++      .|....++.++|.++...|++++|+..|++++++.++
T Consensus       174 ~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  235 (388)
T 1w3b_A          174 NLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            8888888888888888888888877      6667778888888888888888888888888776543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.17  E-value=1.5e-10  Score=104.15  Aligned_cols=126  Identities=10%  Similarity=0.130  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                ....+..+|.++...|++++|+..++++++..+.      ...++.
T Consensus       187 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~  244 (327)
T 3cv0_A          187 NYDSAAANLRRAVELRPD----------------DAQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMY  244 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHH
Confidence            668888888888887765                4567889999999999999999999999998876      677899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSG------STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~------~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.++...|++++|+.++++++++.+...+...      ...++..+|.++..+|++++|...++++++.+++
T Consensus       245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence            9999999999999999999999998443222111      7889999999999999999999999999887754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.17  E-value=1.6e-09  Score=86.20  Aligned_cols=101  Identities=12%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      ..+.+.......+.+.+++.|++++...|.                .+.++.++|.+|..+|++++|+..+++++++.+.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            344556666677899999999999999887                5778999999999999999999999999999987


Q ss_pred             CC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          242 VK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       242 ~~-d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .. +....+.++.++|.++..+|++++|+++|+++++.
T Consensus        75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            64 44557789999999999999999999999999987

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.17  E-value=1.1e-10  Score=107.26  Aligned_cols=127  Identities=20%  Similarity=0.246  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..|++++...+.                ...+++.+|.++...|++++|+..|++++++.+.      ...++
T Consensus       231 g~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~  288 (368)
T 1fch_A          231 GEYDKAVDCFTAALSVRPN----------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSR  288 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Confidence            3678888889998887765                4568889999999999999999999999999876      67889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEY-----SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~-----~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++|.++...|++++|+.+|++++++.+...+.     +....++..+|.+|..+|++++|...++++++.+++
T Consensus       289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  362 (368)
T 1fch_A          289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT  362 (368)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence            999999999999999999999999996654221     223789999999999999999999999999987754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.17  E-value=5.5e-10  Score=109.66  Aligned_cols=107  Identities=18%  Similarity=0.137  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~-~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...+..+|.+|...|++++|++.|++++++.++.+.... ...++..+|.++...|++++|++.|++++++      .|.
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~  548 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL------STN  548 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SSC
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC
Confidence            456778889999999999999999999988776543333 3678889999999999999999999998888      666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.++..+|.+|...|++++|.++|++++++.++
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            7788999999999999999999999999887654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.17  E-value=2e-10  Score=97.66  Aligned_cols=147  Identities=15%  Similarity=0.159  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          157 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  236 (322)
Q Consensus       157 ~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl  236 (322)
                      .....+...........+.+.++..|++++...+....................++.++|.+|...|++++|+.++++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34445556566666666889999999999987765110000000000011124678899999999999999999999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 020735          237 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKY  315 (322)
Q Consensus       237 ~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~-~~~~kA  315 (322)
                      ++.+.      ...+++++|.++...|++++|+.+|++++++      .|....++..++.++..+++.+++. ..|.+.
T Consensus       116 ~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          116 KIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HhCcc------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887      7889999999999999999999999999999      7778899999999999999998887 444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.16  E-value=4.7e-11  Score=116.21  Aligned_cols=120  Identities=14%  Similarity=0.161  Sum_probs=109.5

Q ss_pred             HHHH-HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHH
Q 020735          172 ALRR-QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK  250 (322)
Q Consensus       172 ~l~~-e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~  250 (322)
                      ..+. +.++..|++++...+.                ...+++.+|.+|...|++++|+.+|++++++.+.       ..
T Consensus       115 ~g~~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~  171 (474)
T 4abn_A          115 TPDYSPEAEVLLSKAVKLEPE----------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KV  171 (474)
T ss_dssp             SSSCCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HH
T ss_pred             ccccHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HH
Confidence            3377 8899999999998877                5678999999999999999999999999998654       37


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 020735          251 AARGLGASLQRQ---------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------GDLERAARFYD  313 (322)
Q Consensus       251 a~~~LG~~~~~~---------gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~--------gd~e~A~~~~~  313 (322)
                      ++.++|.++...         |++++|+++|++++++      .|..+.+++++|.+|..+        |++++|+.+|+
T Consensus       172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~  245 (474)
T 4abn_A          172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA  245 (474)
T ss_dssp             HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence            899999999999         9999999999999999      788889999999999999        99999999999


Q ss_pred             HHHHhhh
Q 020735          314 KYISRLE  320 (322)
Q Consensus       314 kAl~i~e  320 (322)
                      +++++.+
T Consensus       246 ~al~~~p  252 (474)
T 4abn_A          246 QAEKVDR  252 (474)
T ss_dssp             HHHHHCG
T ss_pred             HHHHhCC
Confidence            9998765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.16  E-value=1.9e-10  Score=101.36  Aligned_cols=128  Identities=17%  Similarity=0.086  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      ..+.+.++..|++++...+.                ...+++.+|...+..+++++|+..|++++++.+.      ...+
T Consensus       121 ~~~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~  178 (272)
T 3u4t_A          121 KGNFPLAIQYMEKQIRPTTT----------------DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIG  178 (272)
T ss_dssp             TTCHHHHHHHHGGGCCSSCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHH
T ss_pred             ccCHHHHHHHHHHHhhcCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHH
Confidence            33677788888888877655                4668888995556667999999999999999887      6788


Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          252 ARGLGASLQRQGK---YREAIKYHSMVLQISEREGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       252 ~~~LG~~~~~~gd---~~eAi~~~~kaL~l~~~~~d--~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +..+|.++...++   +++|+.+|++++++.+..++  ......++..+|.+|...|++++|.++|++++++.++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT  253 (272)
T ss_dssp             HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            9999999999999   99999999999999765544  2335678999999999999999999999999998765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.15  E-value=2.8e-10  Score=96.89  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.+|..++..|++++|+..|++++.   .      ...+++++|.++...|++++|+++|++++++      .+.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---P------HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKH   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Ccc
Confidence            556788899999999999999999999851   1      3568999999999999999999999999999      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+.+++++|.+|...|++++|+.+|++++++.+
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence            889999999999999999999999999998654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.15  E-value=4.7e-10  Score=86.69  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735          167 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       167 ~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      .......+.+.++..|++++...+.                ....+..+|.++...|++++|+..++++++..+.     
T Consensus        20 ~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----   78 (131)
T 2vyi_A           20 NEQMKVENFEAAVHFYGKAIELNPA----------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-----   78 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHccCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-----
Confidence            3334444678888899999987765                4567889999999999999999999999998776     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCH
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL  305 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~  305 (322)
                       ...+++.+|.++...|++++|+.++++++++      .+....++..+|.++..+|++
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 -YSKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTTC
T ss_pred             -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHhcC
Confidence             5778999999999999999999999999999      677778999999999999875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=4.3e-10  Score=86.98  Aligned_cols=98  Identities=28%  Similarity=0.475  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +++.+|..+...|++++|+..++++++..+.      ...++..+|.++...|++++|+.+++++++.      .+....
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------CCCchH
Confidence            5678899999999999999999999988765      5678899999999999999999999999988      566678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++..+|.++...|++++|..+++++++..+
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            899999999999999999999999998654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.14  E-value=3.9e-10  Score=87.88  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH
Q 020735          168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  247 (322)
Q Consensus       168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~  247 (322)
                      ......+.+.++..|++++...+.                ....++.+|.+|...|++++|+.++++++++.+.      
T Consensus        25 ~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------   82 (133)
T 2lni_A           25 ECFQKGDYPQAMKHYTEAIKRNPK----------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------   82 (133)
T ss_dssp             HHHHTTCSHHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------
Confidence            334444677888899999887765                4668889999999999999999999999998877      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  304 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd  304 (322)
                      ...+++++|.++...|++++|+.++++++++      .+....++..++.++..+|+
T Consensus        83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhcC
Confidence            6788999999999999999999999999998      77778899999999988774

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.14  E-value=1.4e-09  Score=98.70  Aligned_cols=136  Identities=14%  Similarity=0.148  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+......    ..-...........+|..+...|++++|+..++++++..+.  +......++.
T Consensus       203 ~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~  276 (359)
T 3ieg_A          203 DHELSLSEVRECLKLDQDHKRCF----AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKE  276 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCccchHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHH
Confidence            66777777888777665400000    00000001223456699999999999999999999998765  4455567788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++...|++++|+.++++++++      .|..+.+++.+|.+|...|++++|..+|++++++.++
T Consensus       277 ~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          277 RICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998      7777889999999999999999999999999987654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=4.6e-10  Score=97.64  Aligned_cols=140  Identities=15%  Similarity=0.072  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  242 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~  242 (322)
                      .+.........+.+.++..|++++...|..           +  ....+++.+|.+|+..|++++|+..|+++++..|+.
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFG-----------P--YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-----------T--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------h--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            334445555668888999999999877651           0  134578899999999999999999999999988863


Q ss_pred             CChHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHcCCCchHH--------------H
Q 020735          243 KDPIEEKKAARGLGASLQR------------------QGKYREAIKYHSMVLQISEREGEYSGST--------------E  290 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~------------------~gd~~eAi~~~~kaL~l~~~~~d~~~~a--------------~  290 (322)
                      ..   ...+++.+|.++..                  .|++++|+..|+++++..+.   .+...              .
T Consensus        75 ~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~~  148 (225)
T 2yhc_A           75 PN---IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN---SQYTTDATKRLVFLKDRLAK  148 (225)
T ss_dssp             TT---HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT---CTTHHHHHHHHHHHHHHHHH
T ss_pred             Cc---HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC---ChhHHHHHHHHHHHHHHHHH
Confidence            22   34578888988876                  57999999999999887332   22111              2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ....+|.+|...|++++|+..|+++++..++
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  179 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPD  179 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence            2367899999999999999999999987653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.11  E-value=4.3e-10  Score=109.06  Aligned_cols=144  Identities=16%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          159 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  238 (322)
Q Consensus       159 ~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l  238 (322)
                      ...+.+.........+.+.|+..|++++...+....... +.........+.+++++|.+|..+|+|++|+.+|++++++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE-KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            335556566666667889999999999998876110000 0000011223678899999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q 020735          239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF-YDKY  315 (322)
Q Consensus       239 ~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~-~~kA  315 (322)
                      .+.      ...+++++|.+|..+|+|++|+.+|++++++      .|....++.+++.++..++++++|... |++.
T Consensus       347 ~p~------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          347 DSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             STT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988      7889999999999999999999999999999      788889999999999999999988753 4433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.11  E-value=1e-10  Score=118.94  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhHh--------hhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          174 RRQAKIESYAPSL--------SYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       174 ~~e~al~~y~~al--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      +.+++++.+++++        ...+.                ...+++.+|.+|...|++++|+..|++++++.+.    
T Consensus       406 ~~~~A~~~~~~al~~~~~~~~~~~p~----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----  465 (681)
T 2pzi_A          406 QPVQTLDSLRAARHGALDADGVDFSE----------------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----  465 (681)
T ss_dssp             CHHHHHHHHHHHHTC-------CCTT----------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----
T ss_pred             CHHHHHHHHHHhhhhccccccccccc----------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----
Confidence            6678888888888        33333                4557889999999999999999999999999998    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                        ...+++++|.++...|++++|++.|++++++      +|..+.+++++|.+|..+|++++ +++|++++++.++
T Consensus       466 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          466 --RWRLVWYRAVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence              7889999999999999999999999999999      88888999999999999999999 9999999987653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.9e-09  Score=101.70  Aligned_cols=142  Identities=11%  Similarity=0.053  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHH
Q 020735          169 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE  248 (322)
Q Consensus       169 ~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~  248 (322)
                      .....+.+.+++.+.+++...+.          .+...........+|.++...|++++|+.++++++...+..++....
T Consensus        65 y~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  134 (434)
T 4b4t_Q           65 YVTMGAKDKLREFIPHSTEYMMQ----------FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK  134 (434)
T ss_dssp             HHHHTCHHHHHHHHHHTHHHHHT----------SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHH----------ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence            33444778888888888887765          33333345567778999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..++.+||.+|...|+|++|+.++++++......++.+..+.++.++|.+|..+|++++|..+|++++.+..
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.10  E-value=2.1e-09  Score=89.60  Aligned_cols=115  Identities=14%  Similarity=0.087  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  237 (322)
Q Consensus       158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~  237 (322)
                      +...+.+.+.......++++++..|++++.+.|.-..  . + ........+.++.++|.++..+|+|++|+..|.++++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~--~-~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP--E-E-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT--T-S-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc--h-h-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4446667777777778999999999999999886111  0 0 1122223566999999999999999999999999999


Q ss_pred             H-------HHhCCChHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          238 L-------AQNVKDPIEEKKAA----RGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       238 l-------~~~~~d~~~~~~a~----~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      +       .|+      ...+|    +++|.++..+|++++|+..|++++++.++.
T Consensus        86 l~n~~~e~~pd------~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           86 YFNRRGELNQD------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHCCTTST------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhccccCCCc------hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9       776      77888    999999999999999999999999996653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.10  E-value=1.5e-09  Score=106.58  Aligned_cols=125  Identities=13%  Similarity=0.138  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+++++.|++++...+.                ....+..+|..|...|++++|++.|++++++.+.      ...++.
T Consensus       422 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~  479 (597)
T 2xpi_A          422 EHDQAISAYTTAARLFQG----------------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLN  479 (597)
T ss_dssp             CHHHHHHHHHHHHHTTTT----------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcc----------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHH
Confidence            445555566655554433                3456778899999999999999999999988776      567899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS-TEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~-a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+|.++...|++++|+++|++++++.++.+..+.. ..++..+|.+|...|++++|.++|++++++.+
T Consensus       480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999998776656653 78999999999999999999999999988754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=6.4e-10  Score=106.09  Aligned_cols=114  Identities=15%  Similarity=0.018  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d---~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      .+..+..+|.+|..+|++++|+++|++|+++.+....   ......++.++|.+|..+|++++|+.++++++++.+...+
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4557788999999999999999999999999775432   2234567999999999999999999999999999988654


Q ss_pred             --CchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhc
Q 020735          285 --YSGSTEAYGAIADCYTEL--GDLERAARFYDKYISRLES  321 (322)
Q Consensus       285 --~~~~a~a~~~Lg~~y~~~--gd~e~A~~~~~kAl~i~e~  321 (322)
                        .+..+.++.++|+++...  ++|++|+++|++++++-++
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~  170 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK  170 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence              334677888898887765  4799999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.09  E-value=2.9e-11  Score=92.03  Aligned_cols=101  Identities=10%  Similarity=0.133  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..++.+|.+++..|++++|+..|++++++.+.      ...+++++|.++...|++++|++++++++++.+..++...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            4567889999999999999999999999999887      6788999999999999999999999999988222111112


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      ...+++.+|.++..+|++++|+..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            388999999999999988887766544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.09  E-value=6.7e-10  Score=91.43  Aligned_cols=97  Identities=18%  Similarity=0.147  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+...........+.+.++..|++++...+.                ....++++|.+|...|++++|+..|++++++.+
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   76 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP   76 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3444444555556888999999999998877                567899999999999999999999999999998


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  279 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~  279 (322)
                      .      ...+++++|.+|..+|++++|+.+|++++++.
T Consensus        77 ~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           77 K------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            8      78899999999999999999999999999993

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.09  E-value=8e-11  Score=98.06  Aligned_cols=89  Identities=18%  Similarity=0.252  Sum_probs=81.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          221 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       221 ~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~----------~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +.+.|++|+..+++++++.|.      .+.+++++|.++...+++          ++|+..|+++|++      +|....
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~   81 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDE   81 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHH
Confidence            446789999999999999999      899999999999999875          5999999999999      999999


Q ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhc
Q 020735          291 AYGAIADCYTELG-----------DLERAARFYDKYISRLES  321 (322)
Q Consensus       291 a~~~Lg~~y~~~g-----------d~e~A~~~~~kAl~i~e~  321 (322)
                      +|+++|.+|..+|           ++++|+++|++|+++-++
T Consensus        82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            9999999999885           899999999999998654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.09  E-value=1.6e-10  Score=107.69  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d-----------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      ..+..+..+|..++..|+|++|+..|++++++.+....           ......+++++|.+|..+|+|++|+.+|+++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45667889999999999999999999999998765100           0001138999999999999999999999999


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       276 L~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +++      ++....+++++|.+|..+|++++|+.+|++++++.+
T Consensus       257 l~~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          257 LTE------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            999      788889999999999999999999999999987754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.08  E-value=3e-09  Score=100.24  Aligned_cols=155  Identities=11%  Similarity=0.047  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD  244 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~-~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d  244 (322)
                      .+......+.++|++.|.+++...+............. .......++..+|.+|...|++++|.+++.+++++.+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            34445555788899999999988776433222211111 12234457888999999999999999999999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          245 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       245 ~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ......+...+|.++...|++++|+.++++++.+.+..++....+.++.++|.+|...|+|++|..++++++....
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            7777788899999999999999999999999999999998888999999999999999999999999999987643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.08  E-value=1.3e-09  Score=105.07  Aligned_cols=110  Identities=12%  Similarity=0.021  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCc
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYS  286 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~  286 (322)
                      ........+..+|+|++|+..+++++++..+.  .+......++.+||.+|..+|+|++|+.++++++++.++.  .++|
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            34445566778999999999999999987654  3556788999999999999999999999999999999885  6788


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ..+..+++||.+|..+|++++|..+|++|+++.+
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.08  E-value=9e-10  Score=104.06  Aligned_cols=140  Identities=15%  Similarity=0.123  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      ..+.+.........+.+.++..|++++...+........+...........+++++|.+|+.+|++++|+.++++++++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            34555555566666888899999999985433000000000011233467789999999999999999999999999988


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  311 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~  311 (322)
                      +.      ...+++++|.+|..+|++++|+++|++++++      .|....++..++.++..+++++++.+.
T Consensus       304 p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          304 PS------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87      7889999999999999999999999999999      777788999999999999999888654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.08  E-value=1.6e-09  Score=89.44  Aligned_cols=97  Identities=11%  Similarity=0.044  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          160 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       160 ~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      ..+...........+.+.++..|++++...|.                ....++++|.+|...|+|++|+..|++++++.
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            34455555556666889999999999999887                67789999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      |.      .+.+++++|.+|..+|++++|+.+|++++++
T Consensus       101 P~------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          101 KN------DYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             SS------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            98      7889999999999999999999999999999

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.08  E-value=5.4e-10  Score=101.36  Aligned_cols=135  Identities=14%  Similarity=0.089  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +...........+.+.++..|++++...|.                ...+++.+|.++...|++++|+..+++++...+.
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            334444445555778888999999988877                5567788888888888888887766665432221


Q ss_pred             ---------------CCC-------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH--HHH
Q 020735          242 ---------------VKD-------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEA  291 (322)
Q Consensus       242 ---------------~~d-------------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~--a~a  291 (322)
                                     ...             .+....+++++|.++...|++++|+..|+++++.      +|..  ..+
T Consensus       184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a  257 (287)
T 3qou_A          184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQT  257 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHH
T ss_pred             hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchH
Confidence                           000             0014566777888888888888888888887777      5554  667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +.+++.++..+|+.++|...|++++..
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            778888888888888888888777754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.07  E-value=2e-09  Score=101.74  Aligned_cols=136  Identities=14%  Similarity=0.146  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...+......    ..-...........+|..+...|++++|+..|++++++.+.  +......++.
T Consensus       226 ~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~  299 (450)
T 2y4t_A          226 DHELSLSEVRECLKLDQDHKRCF----AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKE  299 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCChHHHH----HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHH
Confidence            56777777777776655400000    00000001122345599999999999999999999997665  4444567899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++...|++++|+.++++++++      .|..+.++..+|.+|...|++++|..+|++++++.++
T Consensus       300 ~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          300 RICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999998      7777899999999999999999999999999987654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.07  E-value=1.1e-09  Score=99.71  Aligned_cols=126  Identities=16%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTG--KNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la--~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      ......+.+.++..+++++...|.                .....+..+  ..+...|++++|+..|+++++..|.    
T Consensus       139 ~~~~~g~~~~A~~~l~~~~~~~p~----------------~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~----  198 (291)
T 3mkr_A          139 ILLKLDRLDLARKELKKMQDQDED----------------ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP----  198 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC----
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcC----------------cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC----
Confidence            333344788899999999887755                121222222  2233458999999999999998877    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhhhc
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AARFYDKYISRLES  321 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~-A~~~~~kAl~i~e~  321 (322)
                        ...+++++|.++...|++++|++.|++++++      +|..+.++.++|.++..+|++++ +.+++++++++.++
T Consensus       199 --~~~~~~~la~~~~~~g~~~eA~~~l~~al~~------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          199 --TLLLLNGQAACHMAQGRWEAAEGVLQEALDK------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence              7889999999999999999999999999999      88889999999999999999976 56899999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.07  E-value=1e-09  Score=106.00  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+++++...+.                ....+..+|.++...|++++|+..|++++++.+...+.......++
T Consensus       359 ~~~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          359 KFTESEAFFNETKLKFPT----------------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            445555555555555443                3346677888888888888888888888888887665555555567


Q ss_pred             HHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~----------gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++...          |++++|+.+|++++++      .|....++..+|.+|...|++++|.++|++++++.++
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            778888888          8888888888888888      6777789999999999999999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.06  E-value=2.4e-09  Score=101.11  Aligned_cols=132  Identities=20%  Similarity=0.187  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+...+.......+.+.++..|++++...+.                ...+++.+|.+|...|++++|+..|++++++.+
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   91 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDGDPD----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM   91 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            3344444455555788899999999987766                467889999999999999999999999999988


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH---HHH------------HHHHHHHHHcCCH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST---EAY------------GAIADCYTELGDL  305 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a---~a~------------~~Lg~~y~~~gd~  305 (322)
                      .      ...++..+|.+|...|++++|+.+|++++++      .+...   .++            +.+|.++...|++
T Consensus        92 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  159 (450)
T 2y4t_A           92 D------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY  159 (450)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             C------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            7      6788999999999999999999999999887      55444   444            4457789999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 020735          306 ERAARFYDKYISRLE  320 (322)
Q Consensus       306 e~A~~~~~kAl~i~e  320 (322)
                      ++|+.+|++++++.+
T Consensus       160 ~~A~~~~~~~~~~~~  174 (450)
T 2y4t_A          160 TAAIAFLDKILEVCV  174 (450)
T ss_dssp             HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.06  E-value=9e-11  Score=114.58  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+..+..+|..++..|++++|+++|++++++.+.      ...+++++|.+|..+|++++|+++|++++++      ++.
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~   72 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DKK   72 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC
Confidence            3445566788899999999999999999999887      6889999999999999999999999999998      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.+++++|.+|..+|++++|+++|++++++.++
T Consensus        73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  106 (477)
T 1wao_1           73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  106 (477)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            8889999999999999999999999999987653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.06  E-value=1e-09  Score=91.58  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS--TEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~--a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ...+++++|.++...|++++|+..|++++++      .|..  ..++.++|.++..+|+.++|...|++++..
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKV------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            4567888999999999999999999998877      4433  558888999999999999999999988764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.05  E-value=1.6e-09  Score=104.53  Aligned_cols=102  Identities=22%  Similarity=0.232  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ...++..+|.++...|++++|+..|++++++.+.      ...++.++|.++...|++++|+.+++++++.      .+.
T Consensus       309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~  376 (537)
T 3fp2_A          309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLK------FPT  376 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence            3557888999999999999999999999998877      5678899999999999999999999999988      666


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...++.++|.+|...|++++|..+|++++++.++
T Consensus       377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            7788999999999999999999999999987653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=1e-10  Score=114.15  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+++++.|++++...+.                ...++.++|.+|..+|++++|+..+++++++.+.      ...++
T Consensus        20 g~~~~A~~~~~~Al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~   77 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGY   77 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHH
Confidence            3677899999999998877                5778999999999999999999999999999887      78899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC--YTELGDLERAARFYD  313 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~--y~~~gd~e~A~~~~~  313 (322)
                      +++|.+|..+|++++|+++|++++++      .|....++.+++.+  +..+|++++|++.++
T Consensus        78 ~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           78 YRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999      66666788888888  889999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.02  E-value=9.1e-10  Score=105.44  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~---~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      ...+..+|.++...|++++|+..+++++++.+...+......++.++|.++..   .|++++|+.++++++++      .
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~  445 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------D  445 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------C
Confidence            34678899999999999999999999999998754433334589999999999   99999999999999998      6


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +....++..+|.+|...|++++|..+|++++++.++
T Consensus       446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  481 (514)
T 2gw1_A          446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART  481 (514)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence            777889999999999999999999999999987653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.02  E-value=2e-09  Score=78.66  Aligned_cols=84  Identities=26%  Similarity=0.428  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....++.+|.++...|++++|+.+|++++++.+.      ...+++++|.++...|++++|+.++++++++      .|.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~   75 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCC
Confidence            5667889999999999999999999999998876      6778999999999999999999999999998      777


Q ss_pred             HHHHHHHHHHHHHHcC
Q 020735          288 STEAYGAIADCYTELG  303 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~g  303 (322)
                      ...++.++|.++...|
T Consensus        76 ~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           76 NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            7889999999998764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=2.4e-10  Score=106.45  Aligned_cols=149  Identities=9%  Similarity=0.047  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCc-cccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPE-DEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~-~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      .+.+.........+.+.++..|++++...+....... .............+++++|.+|...|+|++|+.++++++++.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4444444444445778899999999987765100000 000000000011378899999999999999999999999998


Q ss_pred             HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 020735          240 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC-YTELGDLERAARFYDKYISR  318 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~-y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +.      ...+++++|.+|..+|++++|+.+|++++++      .|....++.+++.+ ....++.+++...|.+++..
T Consensus       261 p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          261 EK------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             TT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            87      7889999999999999999999999999998      77778889999988 45567788899999999876


Q ss_pred             hhc
Q 020735          319 LES  321 (322)
Q Consensus       319 ~e~  321 (322)
                      .++
T Consensus       329 ~p~  331 (338)
T 2if4_A          329 KDE  331 (338)
T ss_dssp             ---
T ss_pred             CCC
Confidence            653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.01  E-value=1.9e-09  Score=86.85  Aligned_cols=96  Identities=9%  Similarity=-0.078  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  242 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~  242 (322)
                      ...........+.+.++..|++++...|.                ....++.+|.+|...|++++|+..|++++++.|. 
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-   84 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLDHY----------------DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-   84 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-
Confidence            33344445555788899999999998877                5678899999999999999999999999999988 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                           ...+++++|.++...|++++|+.+|++++++.+
T Consensus        85 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           85 -----EPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             -----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                 778899999999999999999999999999955

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.99  E-value=8.3e-09  Score=78.83  Aligned_cols=103  Identities=26%  Similarity=0.407  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.+.++..+++++...+.                ....+..+|.++...|++++|+..++++++..+.      ...++
T Consensus        23 ~~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~   80 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPN----------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAW   80 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcC----------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHH
Confidence            3667788888888877655                3557888999999999999999999999998776      56788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      ..+|.++...|++++|+.++++++++      .|....++.++|.++...|
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999998      7777889999999987654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.99  E-value=1.5e-09  Score=83.91  Aligned_cols=82  Identities=12%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH
Q 020735          227 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  306 (322)
Q Consensus       227 ~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e  306 (322)
                      +|+..|+++++..+.      ...+++++|.++...|++++|+.+|++++++      .|....+++++|.+|...|+++
T Consensus         3 ~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~   70 (115)
T 2kat_A            3 AITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDRA   70 (115)
T ss_dssp             CHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHH
Confidence            466677777776665      5667777788888888888888888887777      6666677777788888888888


Q ss_pred             HHHHHHHHHHHhhh
Q 020735          307 RAARFYDKYISRLE  320 (322)
Q Consensus       307 ~A~~~~~kAl~i~e  320 (322)
                      +|..+|++++++.+
T Consensus        71 ~A~~~~~~al~~~~   84 (115)
T 2kat_A           71 GARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            88888877776653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.99  E-value=1.7e-09  Score=88.41  Aligned_cols=97  Identities=8%  Similarity=-0.044  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +...........+.+.++..|++++...|.                ....++.+|.+|...|++++|+..|++++++.|.
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            334444455556788999999999998877                5678899999999999999999999999999988


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                            ...+++++|.+|...|++++|+.+|++++++.+
T Consensus        88 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           88 ------EPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             ------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence                  778899999999999999999999999999854

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.98  E-value=1.1e-08  Score=90.72  Aligned_cols=111  Identities=17%  Similarity=0.253  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      +.+.++..|++++...                  ...+++.+|.+|..    .+++++|+.+|+++++.  .      ..
T Consensus        57 ~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~------~~  110 (273)
T 1ouv_A           57 NLKKAASFYAKACDLN------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--K------YA  110 (273)
T ss_dssp             CHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CH
T ss_pred             CHHHHHHHHHHHHHCC------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--C------Cc
Confidence            4456666666665432                  34577888888888    88888888888888875  2      46


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          250 KAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       250 ~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                      .+++++|.+|..    .+++++|+++|+++++.      .  ...+++++|.+|..    .+++++|+.+|+++++.
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------N--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc------C--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            678888888888    88888888888888865      2  35678888888888    88899999988888765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.98  E-value=4.5e-09  Score=91.30  Aligned_cols=107  Identities=8%  Similarity=-0.052  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ...++.+|..++..|++++|+..|+++++..|.   ......+++++|.+|+..|++++|+..|+++++..+   +.+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P---~~~~~   77 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCcH
Confidence            446888999999999999999999999997764   222457899999999999999999999999998732   23445


Q ss_pred             HHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTE------------------LGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~------------------~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+++.+|.+|..                  .|++++|+..|+++++..++
T Consensus        78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence            6789999999986                  67999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.96  E-value=7.9e-09  Score=78.26  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 020735          164 EQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK  243 (322)
Q Consensus       164 ~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~  243 (322)
                      ..........+.+.++..|++++...+.                ....+..+|.++...|++++|+..++++++..+.  
T Consensus         9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--   70 (118)
T 1elw_A            9 EKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--   70 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--
Confidence            3333444445778889999999988766                4568889999999999999999999999999876  


Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 020735          244 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  299 (322)
Q Consensus       244 d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y  299 (322)
                          ...+++++|.++...|++++|++++++++++      .|....++..++.+.
T Consensus        71 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           71 ----WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH------EANNPQLKEGLQNME  116 (118)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc------CCCCHHHHHHHHHhh
Confidence                6788999999999999999999999999988      677777888887765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.95  E-value=5.4e-09  Score=82.41  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      ........+.+.++..|++++...+.                ....++.+|.++...|++++|+..+++++++.+.    
T Consensus        16 g~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----   75 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ----   75 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhCcC----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----
Confidence            33444455778899999999998876                4668899999999999999999999999999887    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  302 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~  302 (322)
                        ...+++++|.++...|++++|+.+|++++++.+..... ....+...+..+....
T Consensus        76 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           76 --SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-FGDDIPSALRIAKKKR  129 (137)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CTTHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH-HHHHHHHHHHHHHHHH
Confidence              78899999999999999999999999999997653211 1334455555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.95  E-value=1.8e-08  Score=77.74  Aligned_cols=113  Identities=15%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CChH
Q 020735          168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPI  246 (322)
Q Consensus       168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-~d~~  246 (322)
                      ......+.+.++..|.+++...+.                ....++.+|.+|...|++++|+.++++++++.+.. .+..
T Consensus        13 ~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A           13 DAYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            333444778888999999988765                45678899999999999999999999999999874 3444


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      ....+++++|.++...|++++|+++|++++++      .+. ......++.++...+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HRT-PDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCC-HHHHHHHHHHHHHHH
Confidence            44889999999999999999999999999988      442 566777777766544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.95  E-value=1.8e-08  Score=97.07  Aligned_cols=133  Identities=12%  Similarity=0.044  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~-~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      +.+.+.....+++.+++++.+++++.....         ..+ +....+.++.++|.+|..+|+|++|+.++++++++..
T Consensus       290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~---------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~  360 (429)
T 3qwp_A          290 SLKKIEELKAHWKWEQVLAMCQAIISSNSE---------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR  360 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTCSSC---------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhccC---------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH
Confidence            334444444455667788888888876543         233 3345677899999999999999999999999999988


Q ss_pred             hC--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHcC
Q 020735          241 NV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       241 ~~--~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      ..  .+.+..+..+++||.+|..+|+|++|+.+|++|+++.+..  .++|.....+.+|+.+..+++
T Consensus       361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            64  5667789999999999999999999999999999999986  567888899999999887653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=4.9e-09  Score=99.92  Aligned_cols=138  Identities=10%  Similarity=-0.000  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh--HHH
Q 020735          171 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEE  248 (322)
Q Consensus       171 ~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~--~~~  248 (322)
                      ..++.++|++.|++++...+..     .  ........+.++.++|.+|+.+|++++|+.++++++++.+...+.  ...
T Consensus        63 ~~G~~~eAl~~~~kAl~~~~~~-----~--~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~  135 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELIQQE-----H--ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES  135 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHH-----S--GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred             HCCCHHHHHHHHHHHHHHHHhc-----C--ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence            3347788999999998875430     0  000111245678899999999999999999999999999876543  224


Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhhc
Q 020735          249 KKAARGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT---ELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       249 ~~a~~~LG~~~~~~--gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~---~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +.++.++|.++...  ++|++|+++|++++++      +|..+.++..+|.++.   ..+++++|++.|++++++.++
T Consensus       136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence            56777888777664  5799999999999999      7777888888887754   567778999999999887543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.94  E-value=1.8e-09  Score=84.06  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|++++...+             +......+++.+|.+|...|++++|+..|++++++.|.      ...+++
T Consensus         5 ~~~~A~~~~~~al~~~~-------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~   65 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGL-------------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRV   65 (117)
T ss_dssp             --CCCHHHHHHHHSSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             cHHHHHHHHHHHHHcCC-------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHH
Confidence            44567777888877620             01226788999999999999999999999999999888      688999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ++|.++...|++++|+.+++++++.
T Consensus        66 ~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           66 FYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999988

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.91  E-value=9.4e-09  Score=98.30  Aligned_cols=101  Identities=18%  Similarity=0.214  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ..+..++.+|..++..|++++|+..|+++++..|+       ..++.++|.++...|++++|+..+++++++      .|
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p   70 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL------KP   70 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CS
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------Ch
Confidence            46778999999999999999999999999998752       678999999999999999999999999998      78


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ....+++.+|.+|..+|++++|...|+++++..+
T Consensus        71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            8889999999999999999999999999987643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.3e-08  Score=80.77  Aligned_cols=107  Identities=15%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+.++..|++++...+.             .......++.+|.+|...|++++|+..+++++++.+.      ..
T Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~   99 (148)
T 2dba_A           39 FKCGDYGGALAAYTQALGLDAT-------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------DV   99 (148)
T ss_dssp             HTTTCHHHHHHHHHHHHTSCCC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------CH
T ss_pred             HHhCCHHHHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------CH
Confidence            3344677788889988887654             1123678899999999999999999999999999876      67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  301 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~  301 (322)
                      .+++++|.++...|++++|+.+|++++++      .+....++..++.+...
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRCVSL------EPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHhh
Confidence            88999999999999999999999999998      67667777777776543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.90  E-value=1.3e-08  Score=92.50  Aligned_cols=102  Identities=15%  Similarity=0.092  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG--ASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG--~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      ...++..+|.+|...|++++|+..++++++..++      ........+  ..+...|++++|+..|+++++.      .
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------~  196 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDED------ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK------C  196 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------S
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------C
Confidence            3457888999999999999999999999998654      221111112  2233458999999999999988      7


Q ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          286 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      |..+.+++++|.++..+|++++|...|++++++.++
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            777899999999999999999999999999987654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.90  E-value=2.2e-08  Score=77.98  Aligned_cols=114  Identities=17%  Similarity=0.098  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH
Q 020735          168 QINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE  247 (322)
Q Consensus       168 ~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~  247 (322)
                      ......+.+.++..|++++...|..             .....+++.+|.+++..|++++|+..|+++++..+...   .
T Consensus        11 ~~~~~~~~~~A~~~~~~~~~~~p~~-------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~   74 (129)
T 2xev_A           11 DALKNGKYDDASQLFLSFLELYPNG-------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---K   74 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSS-------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---T
T ss_pred             HHHHhCCHHHHHHHHHHHHHHCCCC-------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---c
Confidence            3344447788888999998877651             01235788999999999999999999999999887621   1


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      ...+++++|.++...|++++|+.+|+++++.      .|....+......+....+
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ------YPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTSHHHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHh
Confidence            3778999999999999999999999999988      5554444444444444333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.89  E-value=4.6e-09  Score=87.36  Aligned_cols=84  Identities=14%  Similarity=0.210  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhC
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL----------EKAFTEFKAALELAQNV  242 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~----------~~Al~~~~kAl~l~~~~  242 (322)
                      ...++++..+++++...|.                .+.++.++|.++...+++          ++|+..|++|+++.|+ 
T Consensus        16 ~~feeA~~~~~~Ai~l~P~----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-   78 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             hHHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-
Confidence            3678899999999999988                778899999999988775          5999999999999999 


Q ss_pred             CChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 020735          243 KDPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQI  278 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~g-----------d~~eAi~~~~kaL~l  278 (322)
                           ...+++++|.+|..+|           ++++|+.+|++|+++
T Consensus        79 -----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           79 -----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence                 8999999999999885           899999999999999

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=7.9e-09  Score=93.58  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE--KKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~--~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ...+++.+|.++...|++++|+..|+++++..|.      .  ..++.++|.++...|+.++|+..|++++..
T Consensus       218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLT------AADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------cccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            5668899999999999999999999999999887      4  778999999999999999999999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.88  E-value=2.5e-09  Score=96.64  Aligned_cols=98  Identities=20%  Similarity=0.248  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  242 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~  242 (322)
                      ...+.......+.+.++..|++++...+.                ....++++|.+|...|++++|+..+++++++.+. 
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-   70 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-   70 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-
Confidence            33444455556788999999999998876                5678899999999999999999999999998887 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                           ...+++++|.+|..+|++++|+.+|++++++.+..
T Consensus        71 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           71 -----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence                 78899999999999999999999999999997654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.87  E-value=5.4e-09  Score=82.37  Aligned_cols=87  Identities=11%  Similarity=-0.010  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.+.++..|++++...|.                ...+++.+|.++...|++++|+..|++++++.|.      ..
T Consensus        28 ~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~   85 (121)
T 1hxi_A           28 LKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DI   85 (121)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence            3444678899999999998887                6778999999999999999999999999999998      78


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .+++++|.++...|++++|+..|++++++
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999988

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.86  E-value=2.6e-08  Score=76.72  Aligned_cols=85  Identities=24%  Similarity=0.331  Sum_probs=74.7

Q ss_pred             HHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 020735          178 KIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA  257 (322)
Q Consensus       178 al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~  257 (322)
                      +++.|++++...|.                ....++.+|.+|...|++++|+..|++++++.+.      ...+++++|.
T Consensus         4 a~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~   61 (115)
T 2kat_A            4 ITERLEAMLAQGTD----------------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGK   61 (115)
T ss_dssp             HHHHHHHHHTTTCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHH
Confidence            56677888877766                5668899999999999999999999999999887      6788999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          258 SLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       258 ~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      ++...|++++|+.+|++++++.+..++
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           62 TLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999765443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=2.3e-08  Score=86.27  Aligned_cols=98  Identities=12%  Similarity=0.042  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       210 ~~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~  281 (322)
                      .+++++|.+|..    .+++++|+.+|+++.+..+    ....+.++++||.+|..    .+++++|+.+|+++++.   
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---  158 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE----SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---  158 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT----SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC----CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---
Confidence            345555666555    5566666666665554322    11245666666666666    55666666666665432   


Q ss_pred             cCCCchHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 020735          282 EGEYSGSTEAYGAIADCYTEL-G-----DLERAARFYDKYISR  318 (322)
Q Consensus       282 ~~d~~~~a~a~~~Lg~~y~~~-g-----d~e~A~~~~~kAl~i  318 (322)
                          +..+.++++||.+|..- |     ++++|..+|+++.+.
T Consensus       159 ----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          159 ----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             ----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence                23445566666666553 2     566666666666543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.85  E-value=1.2e-08  Score=77.49  Aligned_cols=67  Identities=12%  Similarity=0.143  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...+++++|.+|...|++++|+.+|++++++      .|..+.+++++|.+|..+|++++|+.+|++++++.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            4567888888888888888888888888888      676777888888888888888888888888887654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=2.3e-08  Score=88.56  Aligned_cols=93  Identities=17%  Similarity=0.285  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       210 ~~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~  281 (322)
                      .+++.+|.+|..    .+++++|+.+|+++++..        ...+++++|.+|..    .+++++|+++|+++++.   
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---  107 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---  107 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence            456667777777    777777777777776641        35567777777777    77777777777777654   


Q ss_pred             cCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          282 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       282 ~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                         .  .+.+++++|.+|..    .+++++|+++|+++++.
T Consensus       108 ---~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          108 ---K--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             ---T--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ---C--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence               1  35667777777777    77777777777777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.84  E-value=1.5e-08  Score=84.44  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI------------  278 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l------------  278 (322)
                      ..+.+|..+...|++++|+..|+++++..|.      ...+++++|.++...|++++|+..++++++.            
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~   81 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK   81 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence            4566788888888888888888888888887      7778888888888888888888777665322            


Q ss_pred             ---HHHcC-------------CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          279 ---SEREG-------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       279 ---~~~~~-------------d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                         .....             ..|..+.+++++|.++...|++++|+..|++++++.+
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  139 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL  139 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence               11111             1456678999999999999999999999999998754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.82  E-value=6.8e-09  Score=77.67  Aligned_cols=88  Identities=19%  Similarity=0.272  Sum_probs=74.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~-a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      +..|..+...|++++|+..|+++++..+.      ... +++++|.++...|++++|+++|++++++      .|....+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~   71 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------NPDSPAL   71 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHH
Confidence            56899999999999999999999998887      667 9999999999999999999999999999      6665555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.+        +.+.+|..+|++++...+
T Consensus        72 ~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           72 QAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             HHH--------HHHHHHHHHHHHHhccCc
Confidence            533        566777777777665543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.82  E-value=1e-07  Score=91.91  Aligned_cols=114  Identities=13%  Similarity=-0.035  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CChHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKK  250 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~-~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~--~d~~~~~~  250 (322)
                      ++++++..|++++.....         ..++ ....+.++.++|.+|..+|+|++|+.++++++++....  .+.+..+.
T Consensus       313 ~~~eA~~~~~~~L~i~~~---------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          313 SPSELLEICELSQEKMSS---------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTT---------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhC---------ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            457788889999887654         2333 34567788999999999999999999999999998874  46778899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIA  296 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~--~d~~~~a~a~~~Lg  296 (322)
                      ++++||.+|..+|+|++|+.+|++|+++.+..  .++|.......+|.
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            99999999999999999999999999999885  45666666666553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.80  E-value=5.3e-08  Score=78.58  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|+++......                .  +.  +|..|...+..++|+++|+++.+.  .      .+.+++
T Consensus        10 d~~~A~~~~~~aa~~g~~----------------~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g------~~~a~~   61 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM----------------F--GC--LSLVSNSQINKQKLFQYLSKACEL--N------SGNGCR   61 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT----------------T--HH--HHHHTCTTSCHHHHHHHHHHHHHT--T------CHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH----------------h--hh--HHHHHHcCCCHHHHHHHHHHHHcC--C------CHHHHH
Confidence            456677778887765422                1  22  899999999999999999999885  2      578899


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          254 GLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       254 ~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                      +||.+|..    .+|+++|+++|+++.+.        +.+.++++||.+|..    .+|+++|.++|++|.+.
T Consensus        62 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           62 FLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            99999999    89999999999999754        347889999999999    99999999999999875

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.78  E-value=4.8e-08  Score=74.00  Aligned_cols=71  Identities=17%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      ...+++.+|.+|+..|++++|+.+|++++++.|.      ...+++++|.+|...|++++|++.|++++++.+..++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            4567889999999999999999999999999988      6779999999999999999999999999999776554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.76  E-value=3.4e-08  Score=89.86  Aligned_cols=96  Identities=16%  Similarity=0.101  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~-~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      ++..+|..+...|++++|...|+++++..+.      ....+...+..... .|++++|+..|+++++.      .|..+
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~------~p~~~  203 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIP  203 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcH
Confidence            4455555555556666666666666554443      12233333333222 56777777777777666      45556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          290 EAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       290 ~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .++.++|..+...|++++|...|+++++.
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77888888888888888888888888874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=2.6e-08  Score=90.58  Aligned_cols=114  Identities=11%  Similarity=0.067  Sum_probs=62.0

Q ss_pred             HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-HHH
Q 020735          176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFL-------RNQDL-------EKAFTEFKAALE-LAQ  240 (322)
Q Consensus       176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~-------~~g~~-------~~Al~~~~kAl~-l~~  240 (322)
                      +.++..|++++...|.                ....++.+|..+.       ..|++       ++|...|++|++ +.|
T Consensus        33 ~~a~~~~~~al~~~p~----------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p   96 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH----------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK   96 (308)
T ss_dssp             HHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc
Confidence            3455566666666555                3444455555443       23553       566666666665 444


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~-a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .      ...++.++|..+...|++++|++.|++++++      .|.... ++.++|.++...|++++|...|+++++
T Consensus        97 ~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A           97 K------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             c------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4      4445555666666666666666666666554      333232 555555555555555555555555554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.74  E-value=1.2e-07  Score=86.09  Aligned_cols=123  Identities=10%  Similarity=-0.005  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+++++.+.|...+...+.                .. ..+.+|.+++..+++++|+.+|+++...    .+......++
T Consensus       116 g~y~eA~~~l~~~~~~~p~----------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~  174 (282)
T 4f3v_A          116 GNYADAMEALEAAPVAGSE----------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAG  174 (282)
T ss_dssp             TCHHHHHHHHTSSCCTTCH----------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCc----------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHH
Confidence            3556666666555543332                45 8899999999999999999999866442    2344446689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +++|.++..+|++++|+.+|++++.-    ...|. ...+.+++|.++..+|+.++|...|+++++..+
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998732    11144 778999999999999999999999999987643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.72  E-value=1.2e-08  Score=84.47  Aligned_cols=91  Identities=18%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 020735          219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  298 (322)
Q Consensus       219 y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~  298 (322)
                      +...|++++|+..++++++..+.      ...+++.+|.+|...|++++|+.+|++++++      .|..+.++.++|.+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~   87 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQL------RGENAELYAALATV   87 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCSCHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHH
Confidence            45678999999999999998887      6789999999999999999999999999999      66668899999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHHhhhc
Q 020735          299 -YTELGDL--ERAARFYDKYISRLES  321 (322)
Q Consensus       299 -y~~~gd~--e~A~~~~~kAl~i~e~  321 (322)
                       |...|++  ++|+.++++++++.++
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p~  113 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDSN  113 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCCC
Confidence             8899999  9999999999987653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.72  E-value=7e-08  Score=70.26  Aligned_cols=68  Identities=28%  Similarity=0.479  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...+++.+|.++...|++++|+.+|++++++      .+....+++++|.+|...|++++|+.+|++++++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~   75 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            5678999999999999999999999999998      6777889999999999999999999999999987653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.72  E-value=4.7e-08  Score=73.87  Aligned_cols=68  Identities=21%  Similarity=0.315  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          248 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+.+++++|.++...|++++|+++|++++++      .|..+.+++++|.+|..+|++++|+++|++++++.++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999999999      7777899999999999999999999999999987654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.71  E-value=7.2e-08  Score=83.17  Aligned_cols=114  Identities=14%  Similarity=0.001  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhCCChHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ----DLEKAFTEFKAALELAQNVKDPIE  247 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g----~~~~Al~~~~kAl~l~~~~~d~~~  247 (322)
                      ..+.+.++..|+++....                  ...+++++|.+|.. +    ++++|+.+|+++.+  +.      
T Consensus        31 ~~~~~~A~~~~~~a~~~g------------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g------   83 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAAAQG------------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AG------   83 (212)
T ss_dssp             HTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TT------
T ss_pred             CCCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CC------
Confidence            347778888999987642                  34588899999998 7    99999999999976  45      


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 020735          248 EKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS--GSTEAYGAIADCYTE----LGDLERAARFYDKYIS  317 (322)
Q Consensus       248 ~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~~--~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~  317 (322)
                      .+.++++||.+|..    .+++++|+++|+++++.      .+  ..+.++++||.+|..    .+++++|..+|+++++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            67899999999998    99999999999999999      55  568899999999999    9999999999999998


Q ss_pred             h
Q 020735          318 R  318 (322)
Q Consensus       318 i  318 (322)
                      .
T Consensus       158 ~  158 (212)
T 3rjv_A          158 L  158 (212)
T ss_dssp             T
T ss_pred             c
Confidence            6

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.55  E-value=4.7e-07  Score=90.20  Aligned_cols=118  Identities=9%  Similarity=0.006  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCC
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKD  244 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~----------~~~Al~~~~kAl~l~~~~~d  244 (322)
                      .+++++.+.+++...|.                ...+++..+.++...++          ++++++.+.++++..++   
T Consensus        45 ~eeal~~~~~~l~~nP~----------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---  105 (567)
T 1dce_A           45 DESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---  105 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             CHHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---
Confidence            46789999999999988                67789999999999888          99999999999999998   


Q ss_pred             hHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 020735          245 PIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  320 (322)
Q Consensus       245 ~~~~~~a~~~LG~~~~~~g--d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g-d~e~A~~~~~kAl~i~e  320 (322)
                         ...+|++.+.++...+  ++++|++++++++++      ++....+|++.+++....| .+++++++++++++...
T Consensus       106 ---~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p  175 (567)
T 1dce_A          106 ---SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF  175 (567)
T ss_dssp             ---CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred             ---CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence               8889999999999999  779999999999999      8888999999999999999 99999999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.51  E-value=1.1e-06  Score=67.26  Aligned_cols=83  Identities=16%  Similarity=0.125  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d-~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      +..++.+|..++..++|+.|+..|++|++..+.-.. ......++.+||.+++++|++++|+.++++++++      .|.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l------~P~   78 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPE   78 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCC
Confidence            446788999999999999999999999998764321 2335678899999999999999999999999999      777


Q ss_pred             HHHHHHHHHH
Q 020735          288 STEAYGAIAD  297 (322)
Q Consensus       288 ~a~a~~~Lg~  297 (322)
                      ...+..+++.
T Consensus        79 ~~~~~~n~~~   88 (104)
T 2v5f_A           79 HQRANGNLKY   88 (104)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHhhHHH
Confidence            7778888773

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=8.8e-07  Score=85.62  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc
Q 020735          210 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       210 ~~~~~la~~y~~~g---~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      .+++++|.+|...|   ++++|+.+|+++++.  .      ...++++||.+|..    .+++++|+.+|+++++.    
T Consensus       329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----  396 (490)
T 2xm6_A          329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--G------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----  396 (490)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----
Confidence            35677888888766   788888888888774  2      46788999999998    89999999999998764    


Q ss_pred             CCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 020735          283 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  319 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i~  319 (322)
                          +.+.++++||.+|..    .+|+++|..+|+++++.-
T Consensus       397 ----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          397 ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence                236789999999998    899999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.48  E-value=5.5e-07  Score=66.99  Aligned_cols=64  Identities=23%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~-a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+..|..+...|++++|+..|+++++.      .|.... +++++|.+|...|++++|+++|++++++.++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            357899999999999999999999998      777788 9999999999999999999999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.46  E-value=1.6e-06  Score=66.40  Aligned_cols=73  Identities=12%  Similarity=0.111  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d-~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +.-++.+|..++..++|..|+.+|++|++....... ....+.++.++|.+|..+|++++|+.++++++++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            345789999999999999999999999998764332 2457889999999999999999999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.43  E-value=9.9e-07  Score=87.86  Aligned_cols=121  Identities=8%  Similarity=-0.017  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      ..+++++.+.+++...|+                ...+++..+.+....+  ++++|++++.+++++.++      ...+
T Consensus        88 ~~~~eL~~~~~~l~~~pK----------------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~a  145 (567)
T 1dce_A           88 LVKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHC  145 (567)
T ss_dssp             HHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHH
T ss_pred             hHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccH
Confidence            367788899999998887                6789999999999999  779999999999999998      8899


Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHH
Q 020735          252 ARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYI  316 (322)
Q Consensus       252 ~~~LG~~~~~~g-d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~--------------gd~e~A~~~~~kAl  316 (322)
                      |++.+.+....| .+++++++++++|+.      ++....+|++.+.++..+              +.+++|++++++|+
T Consensus       146 W~~R~~~l~~l~~~~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai  219 (567)
T 1dce_A          146 WDYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF  219 (567)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence            999999999999 999999999999988      888899999999999885              66899999999999


Q ss_pred             HhhhcC
Q 020735          317 SRLESD  322 (322)
Q Consensus       317 ~i~e~d  322 (322)
                      .+.++|
T Consensus       220 ~~~P~~  225 (567)
T 1dce_A          220 FTDPND  225 (567)
T ss_dssp             HHCSSC
T ss_pred             hhCCCC
Confidence            877653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.40  E-value=2.8e-06  Score=82.04  Aligned_cols=91  Identities=15%  Similarity=0.220  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHc
Q 020735          211 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       211 ~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      +++.+|..|..    .+++++|+.+|+++.+.  .      ...++++||.+|..    .+++++|+++|+++++.    
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----  180 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--G------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----  180 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence            44555555555    55666666666655442  1      24455666666665    55666666666665543    


Q ss_pred             CCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 020735          283 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYIS  317 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~  317 (322)
                          +.+.++++||.+|..    .+++++|.++|+++++
T Consensus       181 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  215 (490)
T 2xm6_A          181 ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT  215 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence                124566666666666    6666666666666654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.38  E-value=3.4e-06  Score=77.60  Aligned_cols=119  Identities=5%  Similarity=-0.118  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      ..+.++..+.+++...|.                ...+++..+.+....+  ++++++.++.+++...|+      ...+
T Consensus        48 ~s~~aL~~t~~~L~~nP~----------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~a  105 (306)
T 3dra_A           48 YSERALHITELGINELAS----------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQI  105 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHH
T ss_pred             CCHHHHHHHHHHHHHCcH----------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHH
Confidence            346789999999999988                6779999999999999  999999999999999998      7778


Q ss_pred             HHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhh
Q 020735          252 ARGLGASL----QRQ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--RAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~----~~~---gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e--~A~~~~~kAl~i~e  320 (322)
                      +++.+.++    ...   +++++++++++++++.      +|.+..++++.+++....|+++  ++++++++++++-.
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            88888888    666   8999999999999999      8889999999999999999999  99999999997644

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.33  E-value=9.4e-07  Score=65.96  Aligned_cols=67  Identities=18%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+++.+|.++...|++++|+.+|++++++      .+....++.++|.+|...|++++|+.++++++++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            446788999999999999999999999998      6667889999999999999999999999999987543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.33  E-value=1.9e-06  Score=84.04  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             HHHHHHHhHhh-hcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 020735          177 AKIESYAPSLS-YAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  255 (322)
Q Consensus       177 ~al~~y~~al~-~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~L  255 (322)
                      .+...|++++. ..|.                ....++.+|..+...|++++|...|++++++.+.  +   ...++.++
T Consensus       304 ~A~~~~~~Al~~~~p~----------------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~~~  362 (530)
T 2ooe_A          304 EAANIYERAISTLLKK----------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQY  362 (530)
T ss_dssp             HHHHHHHHHTTTTCSS----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHHHH
Confidence            66777777775 4554                3456666777777777777777777777775443  1   01244445


Q ss_pred             HHHHHHcC-----------------------------------CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735          256 GASLQRQG-----------------------------------KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  300 (322)
Q Consensus       256 G~~~~~~g-----------------------------------d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~  300 (322)
                      |..+.+.|                                   ++++|...|+++++.      .|..+.++..++..+.
T Consensus       363 ~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          363 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH------CCCCHHHHHHHHHHHH
Confidence            54444444                                   444555555554444      3333455555555555


Q ss_pred             HcCCHHHHHHHHHHHHHh
Q 020735          301 ELGDLERAARFYDKYISR  318 (322)
Q Consensus       301 ~~gd~e~A~~~~~kAl~i  318 (322)
                      ..|++++|...|++++..
T Consensus       437 ~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHS
T ss_pred             hCCCHhhHHHHHHHHHhc
Confidence            556666666666665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.26  E-value=2.7e-06  Score=81.88  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             HHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKN-F--LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQISER  281 (322)
Q Consensus       210 ~~~~~la~~-y--~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g-----d~~eAi~~~~kaL~l~~~  281 (322)
                      .+++++|.+ |  ...+++++|+.+|+++.+.  .      .+.++++||.+|. .|     ++++|+.+|+++.     
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----  314 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----  314 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence            345566666 3  3456777777777766642  1      3556677777666 44     7777777777764     


Q ss_pred             cCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 020735          282 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYIS  317 (322)
Q Consensus       282 ~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~  317 (322)
                          ++.+.++++||.+|..    ..|+++|..+|+++.+
T Consensus       315 ----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          315 ----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             ----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             ----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence                2235667777777765    3377777777777764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.23  E-value=3.1e-06  Score=82.57  Aligned_cols=114  Identities=11%  Similarity=0.059  Sum_probs=92.2

Q ss_pred             HHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHh
Q 020735          177 AKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR-------NQDLE-------KAFTEFKAALE-LAQN  241 (322)
Q Consensus       177 ~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~-------~g~~~-------~Al~~~~kAl~-l~~~  241 (322)
                      .++..|++++...|.                ....++..|..+..       .|+++       +|...|+++++ +.|+
T Consensus       256 ~a~~~y~~al~~~p~----------------~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGH----------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            445677788877665                45678888888876       79987       89999999997 6665


Q ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          242 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS-TEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       242 ~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~-a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                            ....+..+|..+...|++++|...|++++++      .+.. ..+|.++|..+...|++++|...|++|++.
T Consensus       320 ------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          320 ------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence                  6778999999999999999999999999987      4443 457888888888888888888888888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.18  E-value=2.9e-05  Score=72.12  Aligned_cols=118  Identities=10%  Similarity=0.006  Sum_probs=103.3

Q ss_pred             HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCh
Q 020735          176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~----------~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      +.++..+.+++...|.                ...+++..+.+....+.          +++++.++.+++...|+    
T Consensus        47 ~eaL~~t~~~L~~nP~----------------~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK----  106 (331)
T 3dss_A           47 ESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----  106 (331)
T ss_dssp             HHHHHHHHHHHTTCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC----
Confidence            5678888888888877                56678888888776665          68999999999999888    


Q ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhc
Q 020735          246 IEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRLES  321 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~g--d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd-~e~A~~~~~kAl~i~e~  321 (322)
                        ...++++.+.++...+  +++++++++.+++++      ++.+..++.+.+++....|. +++++++++++++....
T Consensus       107 --ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          107 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             --CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             --CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence              8889999999999999  499999999999999      88889999999999999999 69999999999986543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.17  E-value=2.5e-06  Score=77.45  Aligned_cols=132  Identities=10%  Similarity=-0.039  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCcc--ccc---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPED--EVI---VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE  248 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~--~~~---~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~  248 (322)
                      +...++..+++.+...+....-...  ...   .-+-..--...+..|..+...|+|++|.+.|...+...+.      .
T Consensus        62 r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~------~  135 (282)
T 4f3v_A           62 YSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE------H  135 (282)
T ss_dssp             HTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH------H
T ss_pred             HHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------h
Confidence            4556666777777766652111111  000   0000012234556689999999999999999887765444      5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~-~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      . +.+.+|.++++.++|++|+.+|++++...     ++. ...+++++|.++..+|++++|+.+|++++.
T Consensus       136 ~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          136 L-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-----DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            5 88999999999999999999999765441     222 356899999999999999999999999973

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.16  E-value=4.3e-05  Score=70.89  Aligned_cols=120  Identities=8%  Similarity=-0.015  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.++..+..++...|.                ...++...+.+....+  ++++++.++.+++++.++      ...++
T Consensus        90 l~~EL~~~~~~L~~~PK----------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW  147 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCW  147 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHH
Confidence            45677778888888877                6778999999999988  499999999999999998      88899


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHH
Q 020735          253 RGLGASLQRQGK-YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYIS  317 (322)
Q Consensus       253 ~~LG~~~~~~gd-~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~--------------gd~e~A~~~~~kAl~  317 (322)
                      .+.+.+....|. +++++++++++++.      ++.+..++++.+.+....              +.++++++++++++.
T Consensus       148 ~~R~~vl~~l~~~~~eel~~~~~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~  221 (331)
T 3dss_A          148 DYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF  221 (331)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence            999999999999 69999999999999      888899999999999887              568999999999998


Q ss_pred             hhhcC
Q 020735          318 RLESD  322 (322)
Q Consensus       318 i~e~d  322 (322)
                      +.++|
T Consensus       222 ~~P~d  226 (331)
T 3dss_A          222 TDPND  226 (331)
T ss_dssp             HSTTC
T ss_pred             hCCCC
Confidence            87654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.14  E-value=1.4e-05  Score=73.43  Aligned_cols=120  Identities=7%  Similarity=-0.063  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHhCCChH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNF----LRN---QDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y----~~~---g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      ..++++..+.+++...|+                ...+++..+.+.    ...   +++++++.++.++++..++     
T Consensus        84 ~~~eeL~~~~~~L~~nPk----------------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-----  142 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEK----------------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-----  142 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-----
T ss_pred             cHHHHHHHHHHHHHHCcc----------------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-----
Confidence            456677788888888877                455777778877    666   7899999999999999988     


Q ss_pred             HHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHh
Q 020735          247 EEKKAARGLGASLQRQGKYR--EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISR  318 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~--eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd------~e~A~~~~~kAl~i  318 (322)
                       ...++++.+.+....|+++  +++++++++++.      ++.+..++.+.+.+....++      ++++++++++++.+
T Consensus       143 -ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          143 -NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             -CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence             8889999999999999998  999999999998      88888999999999999988      99999999999987


Q ss_pred             hhc
Q 020735          319 LES  321 (322)
Q Consensus       319 ~e~  321 (322)
                      .+.
T Consensus       216 ~p~  218 (306)
T 3dra_A          216 CPQ  218 (306)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.09  E-value=9.9e-06  Score=75.75  Aligned_cols=119  Identities=9%  Similarity=-0.004  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g-~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      ..+.+++.+.+++...|.                ...+++..+.+....+ ++++++.++.+++...++      ...++
T Consensus        69 ~se~AL~lt~~~L~~nP~----------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW  126 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPA----------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVW  126 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHH
T ss_pred             CCHHHHHHHHHHHHhCch----------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHH
Confidence            345688899999999988                6778999999999999 599999999999999998      88899


Q ss_pred             HHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhh
Q 020735          253 RGLGASLQRQ-G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE--------RAARFYDKYISRLE  320 (322)
Q Consensus       253 ~~LG~~~~~~-g-d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e--------~A~~~~~kAl~i~e  320 (322)
                      ++.+.++... + ++++++++++++++.      ++.+..+++..+++....|.++        ++++++++++++-.
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp  198 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG  198 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence            9999999988 8 999999999999988      8888999999999999999888        99999999998654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.09  E-value=1.2e-05  Score=77.48  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=45.9

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          213 LKTGKNFLRN----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS-L--QRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       213 ~~la~~y~~~----g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~-~--~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      +++|.+|...    +++++|+.+|+++.   +.      .+.++++||.+ +  ...+++++|+++|+++.+.       
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------  280 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PG------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-------  280 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-------
Confidence            4444444333    34555555555444   32      34555666665 2  3456666666666665532       


Q ss_pred             chHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 020735          286 SGSTEAYGAIADCYTELG-----DLERAARFYDKYI  316 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~~g-----d~e~A~~~~~kAl  316 (322)
                       +.+.++++||.+|. .|     |+++|..+|+++.
T Consensus       281 -g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          281 -DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             -TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             -CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence             23456666666665 44     6666666666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.06  E-value=4.2e-05  Score=71.76  Aligned_cols=124  Identities=12%  Similarity=0.011  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---Q-DLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~---g-~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+++.|++++...|.                .+.++-.++.+|...   + ...........+++...........+
T Consensus       214 ~~~~A~~l~e~Al~lDP~----------------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPE----------------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            346678889999998887                445555555555421   1 11222233344444333333333367


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .++..++..+...|++++|+.++++++++      ++. ..+|..+|.++...|++++|++.|++|+.+-+
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~L------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDL------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            78888888888899999999999999999      444 56788999999999999999999999998754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.05  E-value=0.00012  Score=60.68  Aligned_cols=107  Identities=19%  Similarity=0.184  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  284 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d---~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d  284 (322)
                      ..++++.-....+..+.|+.|+.....++.+.....+   ......++..+|.+++..++|..|..+|++||+..+....
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3445666677888999999999999998888876444   5667888999999999999999999999999988774321


Q ss_pred             -------------------CchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          285 -------------------YSGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       285 -------------------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                                         .+...+..+.++.||.+++++++|+...+.
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                               122447889999999999999999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.01  E-value=7.1e-05  Score=80.61  Aligned_cols=96  Identities=13%  Similarity=0.128  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-------  281 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-------  281 (322)
                      ..+++.+|..+...|++++|++.|.++     +      ....+..+|.++.+.|+|++|+++|..+++..+.       
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----d------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----D------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence            457889999999999999999999886     2      5667888999999999999999999887754311       


Q ss_pred             ---------------cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          282 ---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       282 ---------------~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                                     .-..+. ...+..+|..+...|+|++|..+|+++-
T Consensus      1174 afaYAKl~rleele~fI~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A         1174 IFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS 1222 (1630)
T ss_pred             HHHHHhhcCHHHHHHHHhCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhh
Confidence                           001111 2356679999999999999999998874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=3.1e-05  Score=63.63  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCC-c-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEY-S-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~g---d~~eAi~~~~kaL~l~~~~~d~-~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...+.+++|+++.+.+   +.++++..+++.++.      . | ...+++|+||..|..+|+|++|.+++++++++-+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            4456667777777666   555777777776665      3 3 4566777777777777777777777777776544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.98  E-value=2.5e-05  Score=58.68  Aligned_cols=67  Identities=13%  Similarity=-0.019  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd---~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+..+..+|.+++..++   .++|...+++++++      +|..+.+.+.+|..+...|+|++|+.+|+++++..+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            35677888888876666   79999999999999      999999999999999999999999999999987543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.88  E-value=3e-05  Score=72.47  Aligned_cols=120  Identities=8%  Similarity=-0.056  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN-Q-DLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~-g-~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.++..+.+++...|+                ...+++..+.+.... + +++++++++.++++..++      ...++
T Consensus       105 l~eEL~~~~~~L~~nPK----------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW  162 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLK----------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTW  162 (349)
T ss_dssp             HHHHHHHHHHHHHTTCC----------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHH
Confidence            56778888888888877                677889999999887 7 899999999999998887      78889


Q ss_pred             HHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHH
Q 020735          253 RGLGASLQRQGKYR--------EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYIS  317 (322)
Q Consensus       253 ~~LG~~~~~~gd~~--------eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd-------~e~A~~~~~kAl~  317 (322)
                      .+.+.+....+.++        +++++++++++.      ++.+..++++.+.+....++       ++++++++++++.
T Consensus       163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~  236 (349)
T 3q7a_A          163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH  236 (349)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence            99999999888887        999999999999      88889999999999999997       7999999999998


Q ss_pred             hhhcC
Q 020735          318 RLESD  322 (322)
Q Consensus       318 i~e~d  322 (322)
                      +.++|
T Consensus       237 ~~P~n  241 (349)
T 3q7a_A          237 LIPHN  241 (349)
T ss_dssp             HCTTC
T ss_pred             hCCCC
Confidence            76643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.87  E-value=0.00014  Score=59.75  Aligned_cols=77  Identities=18%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          208 ELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g---~~~~Al~~~~kAl~l~-~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      ...+.++.|.++.+..   +.++++..+++.++.. |     ....+++|+||..+++.|+|++|..++++++++     
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p-----~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-----  100 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK-----EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----  100 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc-----cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence            4568888999999988   6679999999998865 3     236789999999999999999999999999999     


Q ss_pred             CCchHHHHHHHH
Q 020735          284 EYSGSTEAYGAI  295 (322)
Q Consensus       284 d~~~~a~a~~~L  295 (322)
                       .|.+..+....
T Consensus       101 -eP~n~QA~~Lk  111 (152)
T 1pc2_A          101 -EPQNNQAKELE  111 (152)
T ss_dssp             -CTTCHHHHHHH
T ss_pred             -CCCCHHHHHHH
Confidence             77655554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.82  E-value=3.1e-05  Score=62.02  Aligned_cols=78  Identities=26%  Similarity=0.327  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-
Q 020735          223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  301 (322)
Q Consensus       223 g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~-  301 (322)
                      +++++|+.+|+++.+....        .+.  ||.+|...+.+++|+++|+++.+.        +.+.++++||.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~g~~--------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM--------FGC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT--------THH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCCCH--------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence            4789999999999875322        233  999999999999999999999765        346899999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 020735          302 ---LGDLERAARFYDKYISR  318 (322)
Q Consensus       302 ---~gd~e~A~~~~~kAl~i  318 (322)
                         .+|+++|.++|+++.+.
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHcC
Confidence               99999999999999864

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.74  E-value=8e-05  Score=55.88  Aligned_cols=64  Identities=13%  Similarity=0.091  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       209 a~~~~~la~~y~~~g~---~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ...+..+|.+++..++   .++|...+++++++.|+      ...++..+|..++..|+|++|+.+|+++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566778888876666   79999999999999999      8999999999999999999999999999877

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.74  E-value=0.0027  Score=60.11  Aligned_cols=108  Identities=6%  Similarity=-0.111  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CCchHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYSGSTE  290 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~-d~~~~a~  290 (322)
                      ...+|..|+..|+|.+|...+.+.++-.....|+......+..-..+|...+++.++...+.++........ ++...+.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            347899999999999999999999999999999999999999999999999999999999999999887763 3334666


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 020735          291 AYGAIADCYT-ELGDLERAARFYDKYISRL  319 (322)
Q Consensus       291 a~~~Lg~~y~-~~gd~e~A~~~~~kAl~i~  319 (322)
                      ....-|..+. ..++|++|..+|-++.+-+
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            7777799999 8999999999998887544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.66  E-value=0.00099  Score=71.94  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------------CChHH--------HHHHHHHHHHHHHHcCCHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------------KDPIE--------EKKAARGLGASLQRQGKYRE  267 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-------------~d~~~--------~~~a~~~LG~~~~~~gd~~e  267 (322)
                      ...+...|.++.+.|+|++|+++|..|++..+..             +....        ....+.++|..+...|+|++
T Consensus      1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A         1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence            4467779999999999999999998877544221             11111        11246789999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          268 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       268 Ai~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      |+.+|.++              ..|..+|.+|..+|++++|++.+++|..
T Consensus      1214 A~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1214 AKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            99999985              3588899999999999999999998854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.66  E-value=0.00064  Score=62.38  Aligned_cols=121  Identities=10%  Similarity=0.016  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .+.++++..+.+.+...+.              .....+....+.++...|+.+.|.+.+++..+..++  ..+......
T Consensus       114 g~~eeAL~~l~~~i~~~~~--------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d--~~~~~d~~l  177 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEA--------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED--TVSGDNEMI  177 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCS--------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH--HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCC--------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--ccccchHHH
Confidence            3667777777777654431              126678888999999999999999999998776541  001112233


Q ss_pred             HHH--HHHHHHcC--CHHHHHHHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          253 RGL--GASLQRQG--KYREAIKYHSMVLQISEREGEYSG--STEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       253 ~~L--G~~~~~~g--d~~eAi~~~~kaL~l~~~~~d~~~--~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ..|  +++....|  ++.+|...|++..+.      .+.  ....+++   ++..+|++++|...+++.++.
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQT------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHh------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence            444  44466666  999999999996544      443  3444554   899999999999999977655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.61  E-value=0.00021  Score=64.81  Aligned_cols=102  Identities=13%  Similarity=0.059  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 020735          208 ELLSRLKTGKNFLR---N--Q------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----GKYREAIKY  271 (322)
Q Consensus       208 ~a~~~~~la~~y~~---~--g------~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~-----gd~~eAi~~  271 (322)
                      .+..+++.|.+...   .  +      ...+|...+++++++.|+    .....++..||..|...     |+.++|.++
T Consensus       151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~----~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS----YQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT----HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC----cccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            55666666666533   1  2      256777788888888875    33466899999999995     999999999


Q ss_pred             HHHHHHHHHHcCCCchH-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q 020735          272 HSMVLQISEREGEYSGS-TEAYGAIADCYTE-LGDLERAARFYDKYISRL  319 (322)
Q Consensus       272 ~~kaL~l~~~~~d~~~~-a~a~~~Lg~~y~~-~gd~e~A~~~~~kAl~i~  319 (322)
                      |++++++      .|+. ..+++..|..+.. .|++++|..+++++++.-
T Consensus       227 ferAL~L------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          227 FEHLTRY------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID  270 (301)
T ss_dssp             HHHHHHH------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHh------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence            9999999      7754 8889999999988 599999999999999754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.51  E-value=0.0031  Score=57.73  Aligned_cols=105  Identities=8%  Similarity=-0.048  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-
Q 020735          208 ELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-  284 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d-  284 (322)
                      .....+..|++....|  ++.+|...|+++.+..+   + +.....+++   ++..+|++++|.+.+++.++.....+. 
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p---~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k  247 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFP---T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQK  247 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC---S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC---C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence            4445555566677777  99999999999765433   2 222334444   899999999999999988777544322 


Q ss_pred             ---CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          285 ---YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       285 ---~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                         ++..+.++.|+..+...+|+  +|.++++++.+..++
T Consensus       248 ~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          248 ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence               26688999999999999998  899999998876654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.34  E-value=0.00014  Score=70.04  Aligned_cols=94  Identities=12%  Similarity=0.159  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------H
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE---------R  281 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~---------~  281 (322)
                      ++..+|..++..|+|++|..+|.++              ..+..++.++.++|+|++|++.++++.....         .
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            7788899999999999999998866              2477888999999999999999988732200         0


Q ss_pred             cCC----------CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          282 EGE----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       282 ~~d----------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      .++          -...++-...+..+|...|++++|+.++++++.+
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            000          0001111223558899999999999999999754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.08  E-value=0.0097  Score=49.25  Aligned_cols=124  Identities=11%  Similarity=0.099  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 020735          162 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  241 (322)
Q Consensus       162 l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~  241 (322)
                      +.+++..+.....++.++-.....+.....       ....-.....+.++...|..++..++|.+|...|++|+++.+.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~-------~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-------NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-------CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            334444444444444454444444443321       0012234557888999999999999999999999999998875


Q ss_pred             CCChH-------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 020735          242 VKDPI-------------------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  299 (322)
Q Consensus       242 ~~d~~-------------------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y  299 (322)
                      +....                   .+.+..|.++.+|...+++++|+..++..       ....-.+.....||..|
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-------CGGGCCHHHHHHHHHHC
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-------CchhcCHHHHHHHHHHh
Confidence            42211                   12367789999999999999999987652       11222344555566655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.02  E-value=0.00014  Score=69.96  Aligned_cols=81  Identities=15%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ....++.+|.+.|+++++.++++.     +       ...++.++|..+...|+|++|+.+|.++              .
T Consensus        96 i~~~Li~~Y~Klg~l~e~e~f~~~-----p-------n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~  149 (449)
T 1b89_A           96 VETELIFALAKTNRLAELEEFING-----P-------NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------S  149 (449)
T ss_dssp             -------------CHHHHTTTTTC-----C-----------------------CTTTHHHHHHHT--------------T
T ss_pred             hHHHHHHHHHHhCCHHHHHHHHcC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------h
Confidence            445578888889999998877753     1       2248999999999999999999999975              2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      .|..+|.++..+|+|++|.+.|+++..
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~  176 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANS  176 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCC
Confidence            588899999999999999999999843

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.87  E-value=0.003  Score=57.21  Aligned_cols=74  Identities=15%  Similarity=0.005  Sum_probs=63.7

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHHHH-cCCHHHHHHHHH
Q 020735          201 IVDPKKEELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQR-QGKYREAIKYHS  273 (322)
Q Consensus       201 ~~~~~~~~a~~~~~la~~y~~~-----g~~~~Al~~~~kAl~l~~~~~d~~~~-~~a~~~LG~~~~~-~gd~~eAi~~~~  273 (322)
                      ..+++.....++..+|..|...     |+.++|..+|++|+++.|.      . ..+++..|..+.. .|++++|..+++
T Consensus       191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~------~~id~~v~YA~~l~~~~gd~~~a~~~L~  264 (301)
T 3u64_A          191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA------HDPDHHITYADALCIPLNNRAGFDEALD  264 (301)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT------TCSHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred             HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC------CCchHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4556666778899999999995     9999999999999999996      4 6778888988887 599999999999


Q ss_pred             HHHHHHH
Q 020735          274 MVLQISE  280 (322)
Q Consensus       274 kaL~l~~  280 (322)
                      ++++...
T Consensus       265 kAL~a~p  271 (301)
T 3u64_A          265 RALAIDP  271 (301)
T ss_dssp             HHHHCCG
T ss_pred             HHHcCCC
Confidence            9998833

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.85  E-value=0.0033  Score=58.95  Aligned_cols=106  Identities=11%  Similarity=0.009  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHH
Q 020735          208 ELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----KYREAIKYHSMVLQISE  280 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~---~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g----d~~eAi~~~~kaL~l~~  280 (322)
                      .++.++..|..+...++   +.+|+.+|++|+++.|.      .+.++-.++.+|....    ..........++++...
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            45666677777776654   58999999999999998      7777777777765321    11233344445555434


Q ss_pred             HcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          281 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       281 ~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .....+..+.++..+|..+...|++++|..++++|+++-
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln  307 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE  307 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            444456678889999999999999999999999999874

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.05  Score=52.19  Aligned_cols=113  Identities=10%  Similarity=0.002  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ..+.....++..|...|++.+|.+.......-.....+.......+......|...+|+.+|...++++.........++
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            45667788999999999999999999988766656677777888888899999999999999999999865544444444


Q ss_pred             -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          287 -GSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       287 -~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                       .....+...|..+...++|.+|..+|..+.+..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence             355667788999999999999999999887643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.55  E-value=0.012  Score=46.62  Aligned_cols=68  Identities=13%  Similarity=0.044  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGKYRE---AIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~e---Ai~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...+.+++++++....+..+   +|..++..+..     +.| ..-+++|.||..+.++|+|++|..+.+..|++-+
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            34556666666666655554   55555554332     112 4556777777777777777777777777766543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.49  E-value=0.043  Score=43.33  Aligned_cols=75  Identities=16%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          209 LLSRLKTGKNFLRNQDLEK---AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~---Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      ..+.++.|+++.+..+...   ++..++..+..    .++...-..+|.||..+++.|+|++|..+++..|++      .
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~------e  104 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------E  104 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------C
Confidence            4577888999888777666   66666665542    223356788999999999999999999999999999      6


Q ss_pred             chHHHHHH
Q 020735          286 SGSTEAYG  293 (322)
Q Consensus       286 ~~~a~a~~  293 (322)
                      |.+..+..
T Consensus       105 P~n~QA~~  112 (126)
T 1nzn_A          105 PQNNQAKE  112 (126)
T ss_dssp             TTCHHHHH
T ss_pred             CCCHHHHH
Confidence            75554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.46  E-value=0.26  Score=46.46  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 020735          222 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  301 (322)
Q Consensus       222 ~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~  301 (322)
                      .+..+.-++...++++.+..-+-.+.....-..||..|+..|+|.+|.+.+.+.++-++..++.....+.+..-..+|..
T Consensus        72 ~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~  151 (394)
T 3txn_A           72 DAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA  151 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            35667777788888888887555555555667999999999999999999999999998888888888999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhh
Q 020735          302 LGDLERAARFYDKYISRL  319 (322)
Q Consensus       302 ~gd~e~A~~~~~kAl~i~  319 (322)
                      ++++.++..+|.+|..+.
T Consensus       152 ~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          152 LSNLPKARAALTSARTTA  169 (394)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhh
Confidence            999999999999998765

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.022  Score=54.36  Aligned_cols=105  Identities=10%  Similarity=0.042  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +...+|..|+..|++++|.+.|.++.......+.   ....+..+-.++...+|+..+..++.++-.+....++......
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            4567999999999999999999999887765544   3456677778888999999999999999888777666555666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ....-|..+...++|.+|..+|-.+..-
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            6677788999999999999999887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.40  E-value=0.11  Score=52.52  Aligned_cols=104  Identities=11%  Similarity=-0.001  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------
Q 020735          209 LLSRLKTGKNFLRNQDLEKAF-TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------  281 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al-~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~------  281 (322)
                      ...++..|......|+.++|. ..|++|+...|.      ....+..++......|++++|.+.|++++.....      
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~------s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~  416 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN------SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM  416 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence            446677788888889999997 999999987775      4455677888888999999999999999986321      


Q ss_pred             --cCCC--------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          282 --EGEY--------SGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       282 --~~d~--------~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                        .+..        .....+|...+......|+.+.|...|.+|++.
T Consensus       417 ~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          417 EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              1100        024556777788888888999999999999865

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.61  E-value=0.6  Score=43.63  Aligned_cols=106  Identities=12%  Similarity=0.044  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----C-CChHH----------HHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----V-KDPIE----------EKKAARGLGASLQRQGKYREAIKYH  272 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~-----~-~d~~~----------~~~a~~~LG~~~~~~gd~~eAi~~~  272 (322)
                      .......|......++.+.|.+.+.+|+.++..     . ...+.          ...+...++..+...|++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            344455566666779999999999999987632     1 11111          2234567788888999999999999


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          273 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       273 ~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+.+..      +|..-.++..+-.++...|+..+|+..|+++-+.+.
T Consensus       195 ~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~  236 (388)
T 2ff4_A          195 EALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  236 (388)
T ss_dssp             HHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999888      888788999999999999999999999999877653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.52  E-value=0.3  Score=49.35  Aligned_cols=101  Identities=7%  Similarity=0.031  Sum_probs=75.1

Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          213 LKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       213 ~~la~~y~~~-g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      ...|..-+.. ++++.|...|+++++..+.      ....+...+......|+.+.|...|++++....   +.......
T Consensus       473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~------~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~---~~~~~~~l  543 (679)
T 4e6h_A          473 LENAYIEYHISKDTKTACKVLELGLKYFAT------DGEYINKYLDFLIYVNEESQVKSLFESSIDKIS---DSHLLKMI  543 (679)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS---STTHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC---CHHHHHHH
Confidence            3345544444 4589999999999998886      344444556667778999999999999987622   11145567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLESD  322 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~d  322 (322)
                      +......-...|+.+.+...++++.+.++++
T Consensus       544 w~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          544 FQKVIFFESKVGSLNSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            7777888888999999999999999887653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.49  E-value=0.32  Score=38.62  Aligned_cols=66  Identities=15%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          249 KKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~---~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..+.+++++++.+..+.   .++|..++..++.     ++...-+++|.||..+.++|+|++|..+.+..+++-
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            34555666666555443   3456666554443     122456667777777777777777777777666544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.39  E-value=0.11  Score=50.69  Aligned_cols=79  Identities=11%  Similarity=0.090  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      .+..+|........++.|..+|.+|..+.|.      .+..++.||.+....|+.-+|+-+|.+++..      ....+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~------~~Pf~~  221 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV------KFPFPA  221 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS------SBCCHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHhc------CCCChh
Confidence            5678999999999999999999999999999      7888999999999999999999999998854      333455


Q ss_pred             HHHHHHHHHHH
Q 020735          291 AYGAIADCYTE  301 (322)
Q Consensus       291 a~~~Lg~~y~~  301 (322)
                      +..||...+..
T Consensus       222 a~~nL~~~f~~  232 (497)
T 1ya0_A          222 ASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55565555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.30  E-value=0.46  Score=38.17  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          248 EKKAARGLGASLQRQGKYR---EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       248 ~~~a~~~LG~~~~~~gd~~---eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...+.+++++++....+..   ++|..++..+..     ++...-+++|.||..+.++|+|++|..+.+..|++-+
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            4556777777777766544   566677665553     2225677888889999999999999998888887644

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.11  E-value=0.37  Score=46.68  Aligned_cols=99  Identities=9%  Similarity=0.084  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ..++..+-..|.+.|++++|.+.|++..+..  +..   ...+|..+=..|.+.|+.++|.+.|++-.+.    +-.| .
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g--~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----G~~P-d  174 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFG--IQP---RLRSYGPALFGFCRKGDADKAYEVDAHMVES----EVVP-E  174 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCCC-C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC---ccceehHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC-C
Confidence            3356667788889999999999999876521  111   3456777778899999999999999886532    3233 3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ...|..+-..|...|+.++|.+.+++.-+
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            56788899999999999999999988654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.81  E-value=0.54  Score=37.28  Aligned_cols=74  Identities=12%  Similarity=0.183  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          209 LLSRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~---~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      ..+.++.|.+..+..+.   .+++..++..+...+     ...-..+|.|+..+++.|+|++|..+.+..+++      .
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-----~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~------e  108 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------E  108 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------C
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-----chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh------C
Confidence            45778888888877654   467777777665433     226778999999999999999999999999988      6


Q ss_pred             chHHHHHH
Q 020735          286 SGSTEAYG  293 (322)
Q Consensus       286 ~~~a~a~~  293 (322)
                      |.+..+..
T Consensus       109 P~N~QA~~  116 (134)
T 3o48_A          109 RNNKQVGA  116 (134)
T ss_dssp             TTCHHHHH
T ss_pred             CCCHHHHH
Confidence            65444433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.73  E-value=0.17  Score=49.17  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      ...+..||.+.+....+..|..+|.+|+.+      .|.....|+.||.++...|+.-+|..+|-+++..
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            346789999999999999999999999999      8888899999999999999999999999999853

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.57  E-value=0.7  Score=37.57  Aligned_cols=103  Identities=13%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          211 SRLKTGKNFLRNQDL------EKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       211 ~~~~la~~y~~~g~~------~~Al~~~~kAl~l~~~~~--d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      .+.......-..|+.      ++-.+.|++|+...|...  ........+...+.. ...+|.++|.+.|+.++.+    
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~----   89 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN----   89 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence            333333444444787      888889999988776432  223344455555533 5669999999999999997    


Q ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          283 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       283 ~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                        ....+..+...|.--..+|+..+|.+.+.+|+.+..
T Consensus        90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence              222388888889999999999999999999997654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.43  E-value=0.6  Score=47.65  Aligned_cols=58  Identities=17%  Similarity=0.163  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020735          251 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK  314 (322)
Q Consensus       251 a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~k  314 (322)
                      .+.--+..+..+|+|+-|++..++|+..      .|....+|+.|+.+|..+|||+.|+-.++.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            4555577778899999999999999999      888889999999999999999999976654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.32  E-value=2.4  Score=38.43  Aligned_cols=102  Identities=12%  Similarity=-0.007  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHcCC-CchH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGE-YSGS  288 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~-eAi~~~~kaL~l~~~~~d-~~~~  288 (322)
                      .++.-+..+.+.|++..|.+...-.++.+.+.+.+.. ......+..++.....-+ +=.++.+++++.+.+.++ ..+.
T Consensus        55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gd  133 (312)
T 2wpv_A           55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGD  133 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCC
Confidence            4455566677778888887765555555554332221 223445555554433222 346778899999998765 5578


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFYD  313 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~  313 (322)
                      +..+..+|..|.+.|++.+|..+|-
T Consensus       134 p~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          134 PYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            8899999999999999999999884

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.31  E-value=0.61  Score=37.44  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLE---KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~---~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ..+.++.|.++.+..+.+   +++..++..+.-.+     ...-..+|.|+..+++.|+|++|..+.+..|++
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~-----~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC-----STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-----cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            457788888888876654   56777777666322     125667999999999999999999999999998

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.07  E-value=2.6  Score=38.64  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCC-CchH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGS  288 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~-~eAi~~~~kaL~l~~~~~d-~~~~  288 (322)
                      .++.-+..+.+.|++..|.+...-.++.+.+.+-+. .......+..++.....- .+=.++.+++++.+.+.++ ..+.
T Consensus        57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~-~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd  135 (336)
T 3lpz_A           57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV-DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD  135 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC
Confidence            344445556666666666665443333333321111 012333444444443321 2346677889999888654 5568


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGDLERAARFY  312 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~  312 (322)
                      +..+..+|..|.+.+++.+|..+|
T Consensus       136 p~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          136 PELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHH
Confidence            889999999999999999999887

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.64  E-value=2.5  Score=35.23  Aligned_cols=95  Identities=14%  Similarity=0.123  Sum_probs=69.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHH---------
Q 020735          213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ--ISER---------  281 (322)
Q Consensus       213 ~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~--l~~~---------  281 (322)
                      +-++...+-.|+|..|+-.+.+.     .      .+.+.+.-..+|....||..|+..++..++  +-+.         
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~l-----N------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~  105 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHKL-----N------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE  105 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC-----C------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred             hhhhhhhhhcchHhHHHHHHHhc-----c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence            34677888899999988765431     1      345567778899999999999999999872  1100         


Q ss_pred             -cCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          282 -EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       282 -~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                       .-|+.+..-.+..+|.+....|+.++|+.+|.....+
T Consensus       106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence             1122233445777899999999999999999887653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.36  E-value=7.6  Score=36.77  Aligned_cols=85  Identities=14%  Similarity=0.028  Sum_probs=67.7

Q ss_pred             cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          202 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  280 (322)
Q Consensus       202 ~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~-~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~  280 (322)
                      ..+.......++.....|...+|+.+|...++++.... .....+......+...|..+...++|.+|-.+|..+.+...
T Consensus       170 ~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~  249 (445)
T 4b4t_P          170 SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA  249 (445)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence            34555677788888999999999999999999986544 44455566777788889999999999999999999988766


Q ss_pred             HcCCCc
Q 020735          281 REGEYS  286 (322)
Q Consensus       281 ~~~d~~  286 (322)
                      ..++..
T Consensus       250 ~~~d~~  255 (445)
T 4b4t_P          250 IKSDEA  255 (445)
T ss_dssp             HHSCHH
T ss_pred             ccCCHH
Confidence            555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.00  E-value=1.8  Score=41.59  Aligned_cols=104  Identities=6%  Similarity=-0.176  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHH----------------------------------HHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE----------------------------------EKKAARG  254 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~----------------------------------~~~a~~~  254 (322)
                      ...++..+..+...|+.++|...|++|+.. |....-+.                                  ....+..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            446666788888899999999999999987 54221110                                  0112223


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  320 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g-d~e~A~~~~~kAl~i~e  320 (322)
                      .+....+.++.+.|...|+++ ..      +......|...|......+ +++.|...|+++++.+.
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            333333566778888888877 21      1112344554555555445 68999999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.27  E-value=6.6  Score=39.06  Aligned_cols=96  Identities=10%  Similarity=-0.003  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHhCCChHHHHHH---------HHHHHHHHHHcCCHHHHHHHHH-
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAA------LELAQNVKDPIEEKKA---------ARGLGASLQRQGKYREAIKYHS-  273 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kA------l~l~~~~~d~~~~~~a---------~~~LG~~~~~~gd~~eAi~~~~-  273 (322)
                      ..+..+|..+...++++.|+++|.++      ..++...++.......         +.....+|...|++++|++.|. 
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            36678999999999999999988774      3333444444332211         1112335666788888887775 


Q ss_pred             -----HHHHHHHHcCCCch--HHHHHHHHHHHHHHcCCHH
Q 020735          274 -----MVLQISEREGEYSG--STEAYGAIADCYTELGDLE  306 (322)
Q Consensus       274 -----kaL~l~~~~~d~~~--~a~a~~~Lg~~y~~~gd~e  306 (322)
                           +|+.+++..+. +.  ........+.-....|+++
T Consensus       762 ~~~~~~A~~lA~~~~~-~~~~i~~~~~~~~~~L~~~~~~~  800 (814)
T 3mkq_A          762 SQRFSEAAFLGSTYGL-GDNEVNDIVTKWKENLILNGKNT  800 (814)
T ss_dssp             TTCHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             cCChHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHhccchh
Confidence                 35566665443 22  4444555555556666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.26  E-value=2.7  Score=39.10  Aligned_cols=107  Identities=11%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccc--cccCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDE--VIVDP-----KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~--~~~~~-----~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      +.+.+.+.+.+++..+.. ..+....  .....     ......+...++..+...|++++|+....+++...|-     
T Consensus       130 ~~~~a~~~l~~Al~L~rG-~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-----  203 (388)
T 2ff4_A          130 RFEQASRHLSAALREWRG-PVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY-----  203 (388)
T ss_dssp             CHHHHHHHHHHHHTTCCS-STTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred             CHHHHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----
Confidence            456677888888888743 1111110  00000     1122334556788889999999999999999988875     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCCch
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVLQIS-EREGEYSG  287 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~-~~~~d~~~  287 (322)
                       ...++..+-.+++..|+..+|++.|++.-+.. ++.+-.|.
T Consensus       204 -~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          204 -REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence             55677888889999999999999999987754 44555554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.81  E-value=3  Score=40.22  Aligned_cols=84  Identities=14%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          224 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       224 ~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      +.++|.+.|++..+.  .+..   ...+|..+-..|.+.|++++|.+.|++..+.    +-.| ....|..+=..|...|
T Consensus        85 ~l~~A~~lf~~M~~~--G~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~tyn~lI~~~~~~g  154 (501)
T 4g26_A           85 GLSRGFDIFKQMIVD--KVVP---NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQP-RLRSYGPALFGFCRKG  154 (501)
T ss_dssp             HHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCC-CHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHh--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ccceehHHHHHHHHCC
Confidence            367888888776542  1111   3456788888999999999999999885432    3233 3567888889999999


Q ss_pred             CHHHHHHHHHHHHH
Q 020735          304 DLERAARFYDKYIS  317 (322)
Q Consensus       304 d~e~A~~~~~kAl~  317 (322)
                      +.++|.+.|++..+
T Consensus       155 ~~~~A~~l~~~M~~  168 (501)
T 4g26_A          155 DADKAYEVDAHMVE  168 (501)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.15  E-value=0.45  Score=46.30  Aligned_cols=110  Identities=9%  Similarity=-0.035  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAF----------TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  279 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al----------~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~  279 (322)
                      ..+++.+..+-..|+.....          ..+..++..+--..|....+..++.+-..|...+.|++|..+..++. ..
T Consensus       182 k~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP  260 (523)
T 4b4t_S          182 KLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YP  260 (523)
T ss_dssp             ---------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SC
T ss_pred             HHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CC
Confidence            34555556665566555432          13334444333345666677778888899999999999999999873 11


Q ss_pred             HHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          280 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       280 ~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +....+...+.-+|.+|.++.-+++|.+|.+++..|++..+
T Consensus       261 ~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          261 HTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            11112233566788899999999999999999999986543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.99  E-value=2.7  Score=42.88  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      .+..-+.-+...|+|+-|+...++|...+|.      .-.+|+.|+.+|..+|||+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3344567777899999999999999999998      8889999999999999999999877654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.70  E-value=14  Score=34.61  Aligned_cols=92  Identities=14%  Similarity=0.031  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.|.+.|.+.......          .+   ..+..++..-.++...+|+..+..++.++..+....+++........
T Consensus       146 d~~~A~~~~~~~~~~~~~----------~~---~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          146 DKDNAEKTLGKSLSKAIS----------TG---AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCTTHHHHHHHHHHHHTC----------CC---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCC----------hH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            667777777777765533          11   25567777788888899999999999999999888888888777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      ..|..+...++|.+|-.+|..+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhcc
Confidence            8888899999999999999887654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=83.51  E-value=4.9  Score=32.59  Aligned_cols=87  Identities=10%  Similarity=0.051  Sum_probs=65.3

Q ss_pred             HHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 020735          178 KIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA  257 (322)
Q Consensus       178 al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~  257 (322)
                      -.+.|.+++...|..     .   .......+..+...|.. ...+|.++|.+.|+.++++.+.      .+..+...+.
T Consensus        38 lrd~YerAia~~Pp~-----k---~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk------FAKiwi~~Aq  102 (161)
T 4h7y_A           38 LIGRYSQAIEALPPD-----K---YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK------FAFVHISFAQ  102 (161)
T ss_dssp             HHHHHHHHHHHSCGG-----G---GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT------BHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcc-----c---cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH------HHHHHHHHHH
Confidence            345677788777652     1   22344566666666644 5668999999999999997444      3777888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHH
Q 020735          258 SLQRQGKYREAIKYHSMVLQIS  279 (322)
Q Consensus       258 ~~~~~gd~~eAi~~~~kaL~l~  279 (322)
                      .-.++|+..+|.+.+.+|+.++
T Consensus       103 FEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A          103 FELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHcccHHHHHHHHHHHhccC
Confidence            8889999999999999999873

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.35  E-value=18  Score=30.14  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHh----------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALE--LAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  276 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~--l~~~----------~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL  276 (322)
                      +.+.+..+.+|....+|.+|+...++.++  ..++          .-|+.....-+..+|.+....|+-+|||.++..+.
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            55778889999999999999999999883  1111          11222233456778999999999999999999887


Q ss_pred             HH
Q 020735          277 QI  278 (322)
Q Consensus       277 ~l  278 (322)
                      ..
T Consensus       142 ~~  143 (242)
T 3kae_A          142 GK  143 (242)
T ss_dssp             HH
T ss_pred             CC
Confidence            65

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.55  E-value=13  Score=36.78  Aligned_cols=45  Identities=20%  Similarity=0.177  Sum_probs=32.5

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       220 ~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      ...|++++|.+       +++.+.++    ..+..+|..+.+.++++.|+.+|.++
T Consensus       663 l~~~~~~~A~~-------~~~~~~~~----~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARD-------LLTDESAE----MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHH-------HHTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHH-------HHHhhCcH----hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            44455555544       44544433    46789999999999999999999875

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=82.21  E-value=9.7  Score=40.26  Aligned_cols=100  Identities=17%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQ-NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~-~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      ..+..+-..|.+.|+.++|...|.+..+... ....   ...+|+-|-..|.+.|+.++|.+.|++-.+    .+-.| +
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~----~G~~P-D  199 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---TLDMYNAVMLGWARQGAFKELVYVLFMVKD----AGLTP-D  199 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCC-C
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCC-c
Confidence            3556677888999999999999977654321 1111   355788888899999999999999988543    34344 3


Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 020735          289 TEAYGAIADCYTELGD-LERAARFYDKYIS  317 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd-~e~A~~~~~kAl~  317 (322)
                      ...|..+=.++...|+ .++|.+.+++..+
T Consensus       200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            5567777778888887 4788898887764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.53  E-value=23  Score=29.19  Aligned_cols=26  Identities=15%  Similarity=-0.141  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMV  275 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~ka  275 (322)
                      ..|..||......|+++-|+++|.++
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            34666666666666666666666653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=80.08  E-value=3.9  Score=39.26  Aligned_cols=91  Identities=15%  Similarity=0.033  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~g-d~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      +...+....+.++.+.|...|++| . .+..     ....+...+..-+..+ +++.|...|+.+++..      +..+.
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~------~~~~~  355 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-G-NEGV-----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH------PDSTL  355 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------CCCHH
Confidence            333444445677899999999988 2 2221     1223333444444444 6999999999998862      22223


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKY  315 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kA  315 (322)
                      .+...+......|+.++|...|+++
T Consensus       356 ~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          356 LKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333455556677777777777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.002
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
                   ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEA 365

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGD 304
           ++I           +AY  + +   E+ D
Sbjct: 366 IRI------SPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 14/115 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
            P   +    L           + +A   +  AL L     D +        L    + Q
Sbjct: 267 QPHFPDAYCNL--ANALKEKGSVAEAEDCYNTALRLCPTHADSL------NNLANIKREQ 318

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           G   EA++ +   L++      +     A+  +A    + G L+ A   Y + I 
Sbjct: 319 GNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
           L     + G +  A ++   + +          +T     ++  + +   L+R+A F   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 315 YIS 317
            I 
Sbjct: 59  AIK 61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 203 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 262
           DP   +    L  G      +  ++A   +  AL L+ N             L      Q
Sbjct: 199 DPNFLDAYINL--GNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQ 250

Query: 263 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
           G    AI  +   +++           +AY  +A+   E G +  A   Y+  +
Sbjct: 251 GLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 12/87 (13%)

Query: 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 272
           ++      +  D E A            +             L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTG------VLLLLSSIHFQCRRLDRSAHFS 56

Query: 273 SMVLQISEREGEYSGSTEAYGAIADCY 299
           ++ ++            EAY  + + Y
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVY 77

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 16/107 (14%), Positives = 37/107 (34%)

Query: 216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 275
            +  +   + E A    +   E A++++   +  +    L     + G+  +A +     
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317

Query: 276 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 322
           L+++ R G  S       A+A    +L  L            R+  +
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 220 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 279
           + + + ++A    K ALE             A   LG  L  +G+   ++       Q++
Sbjct: 23  INDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81

Query: 280 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 316
            +   +  +  +    ++     G L+ A    +K  
Sbjct: 82  RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 118

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 298
            +++++     +            G   EA +   + L+     G +     A   + + 
Sbjct: 2   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEV 60

Query: 299 YTELGDLERAARFYDKYIS 317
               G+L R+     +   
Sbjct: 61  LHCKGELTRSLALMQQTEQ 79

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 19/167 (11%), Positives = 42/167 (25%), Gaps = 14/167 (8%)

Query: 152 ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 211
               R  LQ + +++   +       K+E    + ++    + +         K     +
Sbjct: 29  VWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQA-----KNRANPN 83

Query: 212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 271
           R +   N     +    F   +   EL       +  +  +  LG    +Q      +K 
Sbjct: 84  RSEVQANLSLFLEAASGFYT-QLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142

Query: 272 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 318
            S                     + D         +A  +Y      
Sbjct: 143 QSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 291
           +    +  +   +P+ +       G    ++G    A+      +Q            EA
Sbjct: 4   YDKGYQFEEE--NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEA 55

Query: 292 YGAIADCYTELGDLERAARFYDKYIS 317
           +  +     E      A     + + 
Sbjct: 56  WQYLGTTQAENEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-----STEAYGAIADCYTELGD 304
           ++   LG S    G +REA+++    L +  +     G     S   +  +    + LG 
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300

Query: 305 LERAARFYDKYISRLE 320
            +       + +S L 
Sbjct: 301 SDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 213 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 272
            + G   L+  DL  A   F+AA++      DP +  +A + LG +     +   AI   
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQ-----DP-KHMEAWQYLGTTQAENEQELLAISAL 76

Query: 273 SMVLQ 277
              L+
Sbjct: 77  RRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 5/69 (7%)

Query: 219 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG-----LGASLQRQGKYREAIKYHS 273
            +      +A   F  AL + +  + P  E  A        L  +L   G+        +
Sbjct: 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 309

Query: 274 MVLQISERE 282
             L      
Sbjct: 310 RDLSTLLTM 318

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 282
            D  KA   ++ A E     +      K            G+Y EA   +S +++ S   
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 283 GEYSGS-TEAYGAIADCYTELGDLERAARFYDKYIS 317
                S  + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 7/66 (10%), Positives = 16/66 (24%)

Query: 255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 314
                + + +   A           ++ G    +   Y     C+   G+   A    + 
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 315 YISRLE 320
            I    
Sbjct: 103 AIQIFT 108

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 6/76 (7%)

Query: 246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------REGEYSGSTEAYGAIADCY 299
           +     A          G+Y EA       ++IS                  +  +A+  
Sbjct: 6   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65

Query: 300 TELGDLERAARFYDKY 315
             L   + A    DK 
Sbjct: 66  AGLRSFDEALHSADKA 81

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR 266
           ++ L   + G +  + +D + A   +  A EL                  A    +G Y 
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT------YITNQAAVYFEKGDYN 55

Query: 267 EAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 317
           +  +     +++     E Y    +AY  I + Y +    + A  FY+K ++
Sbjct: 56  KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.53
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.5
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.45
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.32
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.31
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.26
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.24
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.2
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.13
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.12
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.1
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.09
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.09
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.02
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.01
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.95
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.94
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.87
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.68
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.29
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.23
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.05
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.03
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.82
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.46
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.41
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.36
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.74
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.24

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.7e-14  Score=110.38  Aligned_cols=101  Identities=16%  Similarity=0.249  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +..+...|..++..|+|++|+..|++++++.|.      ...+++++|.+|..+|++++|+..+++++++      +|..
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~   70 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------chhhhhcccccccccccccccchhhhhHHHh------ccch
Confidence            445667899999999999999999999999998      8899999999999999999999999999999      8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +.+|+++|.+|..+|++++|+..|++++++.++
T Consensus        71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999987654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=7.2e-14  Score=121.21  Aligned_cols=124  Identities=14%  Similarity=0.044  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..+.+.+.....            .+...+..++.+|.+|...|++++|+..|++++++.|+      .+.+++
T Consensus        14 ~~e~al~~~~e~l~~~~~------------~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~   75 (259)
T d1xnfa_          14 QQEVILARMEQILASRAL------------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFN   75 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCC------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhc------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHh
Confidence            344555566665543221            23447888999999999999999999999999999998      788999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++|.+|..+|++++|++.|++++++      +|..+.+++++|.+|..+|++++|+..|++++++.++
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHH------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999      7888889999999999999999999999999987654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.8e-14  Score=119.41  Aligned_cols=101  Identities=11%  Similarity=0.058  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +..+...|..|+..|+|++|+..|++++++.|.      .+.+++++|.+|...|+|++|+.+|++|+++      +|..
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------~p~~   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQS   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh------CCCc
Confidence            445678899999999999999999999999998      7899999999999999999999999999998      8888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +.+|+++|.+|..+|++++|+.+|++++++.++
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999987653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.2e-12  Score=116.78  Aligned_cols=150  Identities=15%  Similarity=0.105  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAAL-RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA  239 (322)
Q Consensus       161 ~l~~~l~~~~~~l-~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~  239 (322)
                      .+..+....+... +.+.+++.|.+++.....          .++....+.++.++|.+|...|++++|+.+|++++++.
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~----------~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~  107 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF  107 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh
Confidence            4444444444444 778999999999998766          45556677889999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020735          240 QNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  318 (322)
Q Consensus       240 ~~~~d~~~~~~a~~~LG~~~~~-~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i  318 (322)
                      +..++......++.++|.+|.. .|++++|+++|++++++.+..+..+....++.++|.+|..+|+|++|+.+|++++.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         108 THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            9999999999999999999976 699999999999999999988888888889999999999999999999999999886


Q ss_pred             hh
Q 020735          319 LE  320 (322)
Q Consensus       319 ~e  320 (322)
                      ..
T Consensus       188 ~~  189 (290)
T d1qqea_         188 SM  189 (290)
T ss_dssp             TS
T ss_pred             Cc
Confidence            54

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-13  Score=111.67  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  286 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~  286 (322)
                      ..+..+...|+.|+..|+|++|+..|++++++.|.      ...++.++|.++...|++++|+..|++++++      +|
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~p   75 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL------DK   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHH------cc
Confidence            35667788999999999999999999999999998      8899999999999999999999999999999      88


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ....++.++|.+|..+|++++|...|++++.+.++
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999999999999987654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.47  E-value=8e-13  Score=107.62  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  282 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~------~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~  282 (322)
                      +...+..|..++..|+|++|+..|++++++.+...+.      ...+.++.++|.+|..+|+|++|+..+++++++..+.
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            4445556999999999999999999999999987653      3456789999999999999999999999999998875


Q ss_pred             CCC-----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          283 GEY-----SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       283 ~d~-----~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...     +....+++++|.+|..+|++++|+++|++|+++.++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            432     235568999999999999999999999999998764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-13  Score=115.37  Aligned_cols=134  Identities=13%  Similarity=0.034  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+.+++.......+.+.+++.|.+...                +   ....++++|.+|..+|++++|++.|++|+++.|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~~----------------~---~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp   67 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQD----------------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK   67 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSS----------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcCC----------------C---CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh
Confidence            444555555555566677776654211                1   234688999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CCchHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----------EYSGSTEAYGAIADCYTELGDLERAAR  310 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~----------d~~~~a~a~~~Lg~~y~~~gd~e~A~~  310 (322)
                      .      .+.+++++|.++..+|+|++|++.|++++...+...          .......+++++|.+|..+|++++|.+
T Consensus        68 ~------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          68 H------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             h------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            8      899999999999999999999999999997643321          112346789999999999999999999


Q ss_pred             HHHHHHHhh
Q 020735          311 FYDKYISRL  319 (322)
Q Consensus       311 ~~~kAl~i~  319 (322)
                      .+++|+++.
T Consensus       142 ~l~~A~~~~  150 (192)
T d1hh8a_         142 QLALATSMK  150 (192)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            999998764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=7.7e-13  Score=104.33  Aligned_cols=106  Identities=18%  Similarity=0.332  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC-c
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-S  286 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~-~  286 (322)
                      ++.....+|..++..|+|++|+.+|.+++++.|.      ...++.++|.+|..+|+|++|++.+++++++.+..... .
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            4566778999999999999999999999999887      78899999999999999999999999999998776543 4


Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          287 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       287 ~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..+.+|..+|.++..++++++|+++|++++...
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            467899999999999999999999999998753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.5e-13  Score=109.95  Aligned_cols=110  Identities=12%  Similarity=0.152  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          206 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMVL  276 (322)
Q Consensus       206 ~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d---------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL  276 (322)
                      ...+..+...|..++..|+|++|+..|++++++.+....         ......++.++|.+|..+|+|++|+.+++++|
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            345666778999999999999999999999998775433         12244568899999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       277 ~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++      +|..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus        90 ~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          90 EL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             hc------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            99      8888999999999999999999999999999998654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.43  E-value=3.4e-13  Score=104.03  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHH
Q 020735          211 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  290 (322)
Q Consensus       211 ~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~  290 (322)
                      ..+.+|..++..|++++|+..|++++++.|.      ...++.++|.++...|++++|+.+|++++++      +|....
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIA   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc------cchhhhhhhhhhhhhhhHHHhhccccccccc------cccccc
Confidence            4578899999999999999999999999998      7899999999999999999999999999999      888899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          291 AYGAIADCYTELGDLERAARFYDKYI  316 (322)
Q Consensus       291 a~~~Lg~~y~~~gd~e~A~~~~~kAl  316 (322)
                      +++++|.+|..+|++++|+++++++|
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.5e-12  Score=114.92  Aligned_cols=123  Identities=18%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          173 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       173 l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      .....+.+.|.+++...+.          .    .....+..+|.++...|++++|+..|++++...|.      ...++
T Consensus       150 ~~~~~a~~~~~~al~~~p~----------~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~  209 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPT----------S----IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLW  209 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTT----------S----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhc----------c----cccccchhhHHHHHHHHHHhhhhcccccccccccc------cccch
Confidence            3556677788888876654          1    12456788999999999999999999999999887      78899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++|.++...|++++|+++|++++++      +|..+.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus       210 ~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         210 NKLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhcccccccchhHHHHHHHHHHH------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999      7888899999999999999999999999999998654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.38  E-value=2.9e-12  Score=104.10  Aligned_cols=109  Identities=21%  Similarity=0.261  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh---H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---I-------EEKKAARGLGASLQRQGKYREAIKYHSMVL  276 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~---~-------~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL  276 (322)
                      ..+..+...|..++..|+|.+|+..|.+++.+.+...+.   .       ....++.|+|.+|+.+|++++|++++++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            455567789999999999999999999999877654321   1       124568899999999999999999999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          277 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       277 ~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ++      +|..+.+|+++|.+|..+|++++|+.+|++++++.++
T Consensus        95 ~~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  133 (153)
T d2fbna1          95 KI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  133 (153)
T ss_dssp             HH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             cc------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99      8888999999999999999999999999999998764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.4e-12  Score=98.28  Aligned_cols=114  Identities=11%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          159 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  238 (322)
Q Consensus       159 ~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l  238 (322)
                      +..+.+++.......+.++++..|.+++...|.                ....+.++|.+|...|++++|+..+.+++++
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------------chhhhhcccccccccccccccchhhhhHHHh
Confidence            456777888888888999999999999999888                6779999999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 020735          239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  300 (322)
Q Consensus       239 ~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~  300 (322)
                      .|.      ...+++++|.++..+|++++|+..|++++++      .|....++..++.+..
T Consensus        67 ~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPD------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH------EANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHH
T ss_pred             ccc------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHhC
Confidence            998      8889999999999999999999999999998      7878888888887653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-11  Score=100.58  Aligned_cols=131  Identities=18%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          158 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  237 (322)
Q Consensus       158 e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~  237 (322)
                      ....+..++.......+++.++..|++++...|.                ....++++|.+|...|++++|+..|+++++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~   72 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIE   72 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh----------------hhhhhhhhHHHHHhccccchHHHHHHHHHH
Confidence            3445667777888888999999999999999887                678999999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 020735          238 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT--ELGDLERAARFYDKY  315 (322)
Q Consensus       238 l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~--~~gd~e~A~~~~~kA  315 (322)
                      +.|.      ...++.++|.++..+|++++|+..+++++.+      .|....++..++.+..  ..+.+++|....+..
T Consensus        73 ~~p~------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~  140 (159)
T d1a17a_          73 LDKK------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  140 (159)
T ss_dssp             HCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hccc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            9998      8899999999999999999999999999999      7777777777776654  444566776554444


Q ss_pred             H
Q 020735          316 I  316 (322)
Q Consensus       316 l  316 (322)
                      .
T Consensus       141 ~  141 (159)
T d1a17a_         141 R  141 (159)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.5e-12  Score=106.90  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ++..+++.|..+...|+|++|++.|.++.   +.      .+.+++++|.+|..+|++++|+++|++|+++      +|.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~------~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------dp~   68 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DP------HSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKH   68 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCCchhHHHHHHHHHHH------hhh
Confidence            45667788999999999999999997631   11      3567999999999999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .+.+|+++|.+|..+|++++|+..|++++...+
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999997643

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.32  E-value=8.5e-12  Score=102.71  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  277 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d---------~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~  277 (322)
                      ..+......|..++..|+|++|+..|.+++.+.+....         ......++.|+|.+|..+|+|++|+.+++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            34567778999999999999999999999987755322         112445688999999999999999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          278 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       278 l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +      +|....+++++|.+|..+|++++|+..|++++++.++
T Consensus        93 l------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~  130 (168)
T d1kt1a1          93 L------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  130 (168)
T ss_dssp             H------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred             c------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9      8888999999999999999999999999999987654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.31  E-value=7.5e-12  Score=101.57  Aligned_cols=139  Identities=16%  Similarity=0.167  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735          153 RQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF  232 (322)
Q Consensus       153 ~~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~  232 (322)
                      ..+..+...+.+++...+...+++.++..|.+++...+..................+..+.++|.+|+.+|++++|+.++
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            34445566778888888888899999999999998775521111111111111223456788999999999999999999


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcC
Q 020735          233 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  303 (322)
Q Consensus       233 ~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~g  303 (322)
                      ++++++.|.      ...+++++|.++..+|++++|+.+|++++++      +|....+...++.+...++
T Consensus        91 ~~al~~~p~------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          91 SKVLKIDKN------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHH
T ss_pred             hccccccch------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHH
Confidence            999999998      7899999999999999999999999999999      8888888888888876654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-11  Score=100.59  Aligned_cols=155  Identities=19%  Similarity=0.210  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          151 LARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFT  230 (322)
Q Consensus       151 ~~~~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~  230 (322)
                      .+..+......+.+.+.......+.+.|+..|++++...+......... ...........+.++|.+|+.+|+|++|+.
T Consensus         5 ~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~nla~~y~k~~~~~~A~~   83 (170)
T d1p5qa1           5 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-AQKAQALRLASHLNLAMCHLKLQAFSAAIE   83 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH-HhhhchhHHHHHHHHHHHHHhhhhcccccc
Confidence            3455555666788888889999999999999999999876521111110 000011234466789999999999999999


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          231 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  310 (322)
Q Consensus       231 ~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~  310 (322)
                      ++++++++.|.      .+.+++++|.+|..+|++++|+.+|++++++      +|....+...++.++...++..+...
T Consensus        84 ~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1          84 SCNKALELDSN------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccc------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998      7899999999999999999999999999999      78788899999999888877765543


Q ss_pred             -HHHHHHHh
Q 020735          311 -FYDKYISR  318 (322)
Q Consensus       311 -~~~kAl~i  318 (322)
                       .|++..+.
T Consensus       152 ~~~~~~f~~  160 (170)
T d1p5qa1         152 KLYANMFER  160 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence             35554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.9e-11  Score=105.50  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~  240 (322)
                      .+.+.+......++.+.+++.|++++...|.                ...+++++|.+|...|++++|+..|++++++.|
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  102 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  102 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC----------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh
Confidence            3445455555566889999999999999887                677899999999999999999999999999998


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------cC-C-----
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------------------------------EG-E-----  284 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~------------------------------~~-d-----  284 (322)
                      .      ...+++++|.++..+|++++|++.|++++++.+.                              .. .     
T Consensus       103 ~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (259)
T d1xnfa_         103 T------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN  176 (259)
T ss_dssp             T------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH
T ss_pred             h------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh
Confidence            8      6788999999999999999999999998854210                              00 0     


Q ss_pred             ----------------------------CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          285 ----------------------------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       285 ----------------------------~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                                                  .+....+++++|.+|..+|++++|..+|+++++..+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         177 IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence                                        012234567799999999999999999999997654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.5e-12  Score=113.72  Aligned_cols=120  Identities=17%  Similarity=0.232  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.+++.|++++...|.                ...++..+|.++...|++++|+..+++++...+.      ....+.
T Consensus       252 ~~~~A~~~~~~al~~~p~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~  309 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPH----------------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN  309 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSS----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhh
Confidence            567788888888877665                4567888999999999999999999999988877      677889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          254 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       254 ~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      .+|.++...|++++|+++|++++++      .|..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTS------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999988      7778899999999999999999999999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=1.8e-11  Score=100.51  Aligned_cols=106  Identities=16%  Similarity=0.175  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  279 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~----------d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~  279 (322)
                      ......|..++..|+|++|+..|.+++++.+...          -......++.++|.++..+|+|++|+..|+++|++ 
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  106 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  106 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence            3456789999999999999999999998654211          12335667899999999999999999999999999 


Q ss_pred             HHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          280 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       280 ~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                           +|..+.+|+++|.+|..+|++++|+..|++++++.++
T Consensus       107 -----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~  143 (169)
T d1ihga1         107 -----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  143 (169)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence                 8889999999999999999999999999999998654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.6e-12  Score=113.00  Aligned_cols=119  Identities=9%  Similarity=0.039  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 020735          175 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  254 (322)
Q Consensus       175 ~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~  254 (322)
                      .++++..+++++...|.                ...++.++|.++...|++++|++.+.+++++.|+      ...++.+
T Consensus        94 ~~eal~~~~~al~~~p~----------------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~------n~~a~~~  151 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPK----------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQH  151 (315)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc------chHHHHH
Confidence            46666666666666665                5556667777777777777777777777777666      6666777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhhc
Q 020735          255 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLES  321 (322)
Q Consensus       255 LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd------~e~A~~~~~kAl~i~e~  321 (322)
                      +|.++...|++++|+++++++|++      +|....+|+++|.++...+.      +++|++++.+++++.++
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~  218 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH  218 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC
Confidence            777777777777777777777776      66666677777777666665      46677777777666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=8.2e-11  Score=104.67  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchH
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  288 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~  288 (322)
                      +..+...|.+|...++|++|++.|.+++++....++....+.++.++|.+|...|++++|+++|++++++....++....
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTE-LGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~-~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..++.++|.+|.. .|++++|+++|++++++.+.
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999965 69999999999999987653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.24  E-value=6.9e-11  Score=97.09  Aligned_cols=154  Identities=16%  Similarity=0.150  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 020735          152 ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE  231 (322)
Q Consensus       152 ~~~r~~e~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~  231 (322)
                      ..++....+.+.+.+.......+.+.|+..|++++...+......... ...........+.++|.+|+..+++++|+.+
T Consensus         8 ~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~   86 (168)
T d1kt1a1           8 TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-SKASESFLLAAFLNLAMCYLKLREYTKAVEC   86 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-hhhcchhHHHHHHhHHHHHHHhhhcccchhh
Confidence            344455666788888888888899999999999998875521111110 0111222445677899999999999999999


Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH-HHH
Q 020735          232 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AAR  310 (322)
Q Consensus       232 ~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~-A~~  310 (322)
                      +++++++.|.      ...+++++|.++..+|+|++|+..|++++++      +|....+...++.+....+++.+ ..+
T Consensus        87 ~~~al~l~p~------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          87 CDKALGLDSA------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999998      8899999999999999999999999999999      78888899999999888876653 555


Q ss_pred             HHHHHHHh
Q 020735          311 FYDKYISR  318 (322)
Q Consensus       311 ~~~kAl~i  318 (322)
                      .|.+..+.
T Consensus       155 ~~~~~f~~  162 (168)
T d1kt1a1         155 TYANMFKK  162 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            55554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-11  Score=97.05  Aligned_cols=96  Identities=16%  Similarity=0.094  Sum_probs=84.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCCc--hH
Q 020735          214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYS--GS  288 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~---gd~~eAi~~~~kaL~l~~~~~d~~--~~  288 (322)
                      .++..+...+++++|.+.|++++.+.|.      ...+++++|.++...   +++++|+..|+++++.      ++  ..
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~   71 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchH
Confidence            4677888999999999999999999998      889999999999864   4566799999998876      43  34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          289 TEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       289 a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+++++|.+|..+|++++|+++|++++++-++
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence            679999999999999999999999999998764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=4e-11  Score=98.40  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 020735          163 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV  242 (322)
Q Consensus       163 ~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~  242 (322)
                      .+.........+.+.++..|.+++...+.............-....+..+.++|.+|...|++++|+..+.+++++.|. 
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-  109 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-  109 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-
Confidence            3334444455567778888888876544310000000011122345667889999999999999999999999999888 


Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHH
Q 020735          243 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  309 (322)
Q Consensus       243 ~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~  309 (322)
                           .+.+++++|.+|..+|++++|+..|++++++      .|....+...++.++.......++.
T Consensus       110 -----~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l------~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         110 -----NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 8899999999999999999999999999999      7777888999999988777666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=6e-12  Score=104.83  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          159 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  238 (322)
Q Consensus       159 ~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l  238 (322)
                      .+.+.+++......++.+.|+..|.+++...|.                ...++.++|.+|...|++++|+..|++|+++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----------------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            345777788888888999999999999999887                6778999999999999999999999999999


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 020735          239 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  283 (322)
Q Consensus       239 ~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~  283 (322)
                      .|.      ...+++++|.+|..+|++++|+.+|++++++.+...
T Consensus        68 ~p~------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          68 DGQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            888      788999999999999999999999999999977544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.2e-11  Score=88.35  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          209 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       209 a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~-~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      +..++.+|.+++..|+|++|+.+|++|+++.+..... ...+.++.+||.++.+.|++++|+++|+++|++      +|.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l------~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh------CcC
Confidence            3467899999999999999999999999998875332 335788999999999999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHc
Q 020735          288 STEAYGAIADCYTEL  302 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~  302 (322)
                      .+.++.|++.+...+
T Consensus        79 ~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          79 HQRANGNLKYFEYIM   93 (95)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            899999998876654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-10  Score=103.77  Aligned_cols=102  Identities=19%  Similarity=0.286  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....+..+|.++...|++++|+..|++++++.|.      ...++.++|.++...|++++|++.+++++..      .+.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~  303 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRL------CPT  303 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc------CCc
Confidence            3456778999999999999999999999998887      6788999999999999999999999999888      777


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...++..+|.+|...|++++|+++|++++++.++
T Consensus       304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  337 (388)
T d1w3ba_         304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            7888999999999999999999999999887654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=105.03  Aligned_cols=120  Identities=8%  Similarity=0.034  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g-~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      ..+.+++.+++++...|.                ...+++++|.++...+ ++++|+.++++++++.|+      ...++
T Consensus        58 ~~~~Al~~~~~ai~lnP~----------------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------~~~a~  115 (315)
T d2h6fa1          58 RSERAFKLTRDAIELNAA----------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVW  115 (315)
T ss_dssp             CCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred             chHHHHHHHHHHHHHCCC----------------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh------hhhHH
Confidence            457788899999998888                6778899999988876 589999999999999888      88899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +++|.++..+|++++|++++++++++      +|....+|.++|+++..+|++++|+.+|++++++-++
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhh------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            99999999999999999999999998      8888899999999999999999999999999987543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.10  E-value=4.2e-09  Score=84.96  Aligned_cols=133  Identities=11%  Similarity=0.044  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-
Q 020735          166 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-  244 (322)
Q Consensus       166 l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d-  244 (322)
                      +.......+++.++..|++++...+.....    .........+.++.++|.+|..+|++++|+..+++++++.++..+ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~----~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPE----EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhh----hhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            344445557899999999999988762110    011223345678899999999999999999999999999886433 


Q ss_pred             ----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHc
Q 020735          245 ----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTEL  302 (322)
Q Consensus       245 ----~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~  302 (322)
                          ......+++++|.+|..+|++++|+++|++++++.++..+.. ........++..+..+
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence                234566899999999999999999999999999998876543 3444455555554443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=8.8e-09  Score=90.30  Aligned_cols=138  Identities=11%  Similarity=-0.037  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 020735          172 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA  251 (322)
Q Consensus       172 ~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a  251 (322)
                      .++.+.++..|++++...+.           .+....+.++..+|.+|...|++++|+..|++++++.+..++......+
T Consensus        25 ~g~~~~A~~~~~~aL~~~~~-----------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          25 DGNPDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcC-----------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            34788899999999988765           2334456788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          252 ARGLGASLQRQGKYREAIKYHSMVLQISEREGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       252 ~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d--~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.+++.++...|++.+|+..+.+++.+......  .+..+.++..+|.++...|++++|..++++++...+
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            999999999999999999999999999887643  344667788999999999999999999999987654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.1e-10  Score=100.93  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHH
Q 020735          212 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  291 (322)
Q Consensus       212 ~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a  291 (322)
                      .+..|..++..|++++|+..|+++++..|.      ...+++++|.++...|++++|+.+|++++++      .|....+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~   89 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLEL------KPDNQTA   89 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhcc------ccccccc
Confidence            467899999999999999999999999888      7889999999999999999999999999999      7778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          292 YGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       292 ~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      +.++|.+|...|++++|.+.+++++.+.+
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             cccccccccccccccccccchhhHHHhcc
Confidence            99999999999999999999999998654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.9e-09  Score=83.21  Aligned_cols=104  Identities=15%  Similarity=0.212  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          159 LQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL  238 (322)
Q Consensus       159 ~~~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l  238 (322)
                      .....+.+.......+++.++..|++++...|.                ...++.++|.+|..+|+|++|++.+++++++
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   67 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence            335556677777778999999999999999887                6778999999999999999999999999999


Q ss_pred             HHhCCCh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 020735          239 AQNVKDP-IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  278 (322)
Q Consensus       239 ~~~~~d~-~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l  278 (322)
                      .+...+. ...+.++..+|.++...+++++|+++|++++..
T Consensus        68 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            9986554 446789999999999999999999999999876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.4e-10  Score=87.22  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCh
Q 020735          169 INAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       169 ~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g---~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      .....+.+.+.+.|++++...|.                ...+++++|.++...+   ++++|+..++++++..+.    
T Consensus         9 ~~~~~~l~~Ae~~Y~~aL~~~p~----------------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~----   68 (122)
T d1nzna_           9 LVSVEDLLKFEKKFQSEKAAGSV----------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCC----------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH----
T ss_pred             hcCHHHHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC----
Confidence            33444778889999999999988                6779999999998644   556799999998875432    


Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q 020735          246 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  302 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~  302 (322)
                      .....++++||.+|+..|+|++|+++|++++++      +|....+...++.+....
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~------~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHH
Confidence            224678999999999999999999999999999      888888888887776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=2e-10  Score=92.31  Aligned_cols=92  Identities=18%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          218 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       218 ~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~----------gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .|.+.+.|++|+..|++++++.|.      .+.+++++|.++...          +.+++|+..|++++++      +|.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~   73 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPK   73 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTT
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cch
Confidence            455677899999999999999999      899999999999854          5568999999999999      899


Q ss_pred             HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhhc
Q 020735          288 STEAYGAIADCYTELGD-----------LERAARFYDKYISRLES  321 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd-----------~e~A~~~~~kAl~i~e~  321 (322)
                      .+.+|+++|.+|..+|+           +++|.++|++++++-++
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~  118 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  118 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence            99999999999988764           68899999999887653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.3e-09  Score=79.57  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          249 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       249 ~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d-~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      +..++.+|.++++.|+|++|+.+|++|+++.+.... .+..+.++.+||.+|..+|++++|+.+|++++++.++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            345789999999999999999999999999876533 4457889999999999999999999999999998765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=1.2e-09  Score=87.66  Aligned_cols=109  Identities=13%  Similarity=0.110  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHH
Q 020735          171 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN----------QDLEKAFTEFKAALELAQ  240 (322)
Q Consensus       171 ~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~----------g~~~~Al~~~~kAl~l~~  240 (322)
                      ....+++++..|++++...|.                .+.+++++|.++...          +.+++|+..|++++++.|
T Consensus         9 r~~~fe~A~~~~e~al~~~P~----------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P   72 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   72 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHccHHHHHHHHHHHHhhCCc----------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            344688899999999999988                778899999998854          456899999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHH
Q 020735          241 NVKDPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  307 (322)
Q Consensus       241 ~~~d~~~~~~a~~~LG~~~~~~gd-----------~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~  307 (322)
                      +      ...+++++|.+|..+|+           |++|+++|++++++      +|....++..|+.+....+.+.+
T Consensus        73 ~------~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l------~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          73 K------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE------QPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             h------hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc------CCCHHHHHHHHHHHHHHHHHHHH
Confidence            8      88999999999988764           78999999999999      88888888888888644433333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=7.3e-09  Score=90.83  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      .+......|.++...|++++|+..++++++..+. .+......++..+|.++..+|++++|+..|++++++....++.+.
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3445556799999999999999999999998776 344556778999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ...++.+++.++...|++..|...+.+++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            889999999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.87  E-value=3.4e-09  Score=80.87  Aligned_cols=88  Identities=11%  Similarity=0.005  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChH
Q 020735          167 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI  246 (322)
Q Consensus       167 ~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~  246 (322)
                      .......+.+.++..|++++...|.                ...++..+|.++...+++++|+..|++++++.|.     
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----   82 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPE----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-----   82 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccc----------------cchhhhhhhhhhhhhhhHHHhhcccccccccccc-----
Confidence            3444555778899999999998887                5779999999999999999999999999999998     


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020735          247 EEKKAARGLGASLQRQGKYREAIKYHSMVL  276 (322)
Q Consensus       247 ~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL  276 (322)
                       ...+++++|.+|..+|++++|++++++.|
T Consensus        83 -~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 -DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence             88999999999999999999999999975

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.8e-09  Score=102.03  Aligned_cols=98  Identities=12%  Similarity=0.086  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCch
Q 020735          208 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  287 (322)
Q Consensus       208 ~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~  287 (322)
                      ....+.++|..+...+++++|...+++++...+        ..++.++|.++..+|+|++|+.+|++|+++      .|.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l------~P~  184 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQL------VPS  184 (497)
T ss_dssp             ------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTT
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCC
Confidence            455778899999999999999999999988765        357889999999999999999999999999      888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          288 STEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       288 ~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      .+.+|++||.+|...|++.+|+.+|.+|+.+-
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            89999999999999999999999999999754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=1.4e-07  Score=77.92  Aligned_cols=108  Identities=12%  Similarity=0.041  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----C-Ch----------HHHHHHHHHHHHHHHHcCCHHHHHH
Q 020735          207 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----K-DP----------IEEKKAARGLGASLQRQGKYREAIK  270 (322)
Q Consensus       207 ~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~-----~-d~----------~~~~~a~~~LG~~~~~~gd~~eAi~  270 (322)
                      .....+...|......|++++|.+.|.+|+++.+.-     . ..          .....++.+++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            356678889999999999999999999999986521     1 11          1234678999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          271 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       271 ~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      ++++++++      +|....+|.+++.+|...|++++|+..|+++.+.+.
T Consensus        89 ~~~~al~~------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          89 ELEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             HHHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            99999999      899999999999999999999999999999977653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=5.5e-08  Score=87.07  Aligned_cols=121  Identities=9%  Similarity=-0.048  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCChHHH
Q 020735          171 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEE  248 (322)
Q Consensus       171 ~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g--~~~~Al~~~~kAl~l~~~~~d~~~~  248 (322)
                      ...+.+.++..+++++...|.                ...+++.+|.++...+  ++++|+..+++++++.+.      .
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~------~  142 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPK----------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------N  142 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------C
T ss_pred             HHHHHHHHHHHHHHHHHhCCC----------------cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch------h
Confidence            333566788888999888876                5567777887777665  589999999999999776      4


Q ss_pred             HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 020735          249 KKA-ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  319 (322)
Q Consensus       249 ~~a-~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~  319 (322)
                      ..+ +..+|.++...+++++|+.++++++++      +|....+++++|.++..+|++++|...+++++.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~  208 (334)
T d1dcea1         143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL  208 (334)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred             hhhhhhHHHHHHHhccccHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH
Confidence            554 457789999999999999999999998      88889999999999999999988877666665554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.6e-07  Score=87.00  Aligned_cols=82  Identities=11%  Similarity=0.056  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHH
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  289 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a  289 (322)
                      .+++++|.++...+++++|+.+|++|+++.|+      .+.++++||.++...|++.+|+.+|.+++.+      .+..+
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~------~~~~~  220 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV------KFPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS------SBCCH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCH
Confidence            46888999999999999999999999999999      8889999999999999999999999999988      77778


Q ss_pred             HHHHHHHHHHHHcC
Q 020735          290 EAYGAIADCYTELG  303 (322)
Q Consensus       290 ~a~~~Lg~~y~~~g  303 (322)
                      .++.||+.++....
T Consensus       221 ~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         221 AASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            89999998887644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.29  E-value=2.2e-07  Score=81.58  Aligned_cols=124  Identities=10%  Similarity=-0.035  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHH
Q 020735          170 NAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK  249 (322)
Q Consensus       170 ~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~  249 (322)
                      ....+.++++..|++++...|.                ....+..+|.++...|++++|+..+++++++.|+      ..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~----------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------~~   64 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK----------------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YL   64 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------GH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------cH
Confidence            3445778899999999999988                7788999999999999999999999999999998      77


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  320 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e  320 (322)
                      .++..++.++...+..+++...+.+...     ...+.....+...+..+...|++++|...++++.+..+
T Consensus        65 ~~~~~l~~ll~a~~~~~~a~~~~~~~~~-----~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          65 PGASQLRHLVKAAQARKDFAQGAATAKV-----LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEC-----CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhhhhc-----ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            7888888888776666655544433221     12455667788889999999999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=8.7e-06  Score=72.22  Aligned_cols=118  Identities=10%  Similarity=-0.059  Sum_probs=94.5

Q ss_pred             HHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCh
Q 020735          176 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLK----------TGKNFLRNQDLEKAFTEFKAALELAQNVKDP  245 (322)
Q Consensus       176 e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~----------la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~  245 (322)
                      +.+++.+.+++...|.                ...+++.          .+..+...+++++|+.+++++++..|+    
T Consensus        46 ~~al~~~~~~l~~~P~----------------~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk----  105 (334)
T d1dcea1          46 ESVLELTSQILGANPD----------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----  105 (334)
T ss_dssp             HHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC----
Confidence            6788899999988876                2333333          344455666789999999999999888    


Q ss_pred             HHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCCchHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          246 IEEKKAARGLGASLQRQGK--YREAIKYHSMVLQISEREGEYSGSTEA-YGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       246 ~~~~~a~~~LG~~~~~~gd--~~eAi~~~~kaL~l~~~~~d~~~~a~a-~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                        ...+++++|.++...++  +++|+..+++++++      ++....+ +..+|.++...+++++|+.++++++++-++
T Consensus       106 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         106 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (334)
T ss_dssp             --CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             --cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence              78888999988887664  89999999999999      6655555 567889999999999999999999876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=1.5e-05  Score=65.32  Aligned_cols=119  Identities=11%  Similarity=-0.037  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCCCCcccccc--------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020735          161 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIV--------DPKKEELLSRLKTGKNFLRNQDLEKAFTEF  232 (322)
Q Consensus       161 ~l~~~l~~~~~~l~~e~al~~y~~al~~~~~~~~~~~~~~~~--------~~~~~~a~~~~~la~~y~~~g~~~~Al~~~  232 (322)
                      .+.+.+......++.+++++.|.+++.+++..  ........        .-......++..++.++...|++++|+.++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~--~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGP--VLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--TTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc--ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            44455556666668889999999999987641  11100000        001223457788999999999999999999


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCch
Q 020735          233 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYSG  287 (322)
Q Consensus       233 ~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~-~~d~~~  287 (322)
                      ++++++.|.      ...++..++.++...|++.+|+..|+++.+...+ .+-.|.
T Consensus        91 ~~al~~~P~------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          91 EALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999998      8889999999999999999999999999876544 455554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.03  E-value=2.4e-05  Score=60.47  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  253 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~  253 (322)
                      +.+.++..|+++.....                  ..+.+.+|.  ....++++|+.+++++.+.  .      .+.+++
T Consensus         8 d~~~A~~~~~kaa~~g~------------------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g------~~~a~~   59 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE------------------MFGCLSLVS--NSQINKQKLFQYLSKACEL--N------SGNGCR   59 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC------------------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--T------CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC------------------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--c------chhhhh
Confidence            45567777777765321                  124455553  3457899999999998763  2      467889


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          254 GLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       254 ~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                      .||..|..    ..|+++|+++|+++.+.        +.+.+.++||.+|..    ..|+++|.++|++|.+.
T Consensus        60 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          60 FLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hHHHhhhhccccchhhHHHHHHHhhhhcc--------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            99999986    67899999999998754        346789999999988    57999999999999764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.82  E-value=1.5e-05  Score=69.43  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=72.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 020735          216 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  295 (322)
Q Consensus       216 a~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~L  295 (322)
                      +...+..|++++|+..++++++..|.      ...++.++|.++...|++++|+..|++++++      .|....++..+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------~P~~~~~~~~l   70 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKL------FPEYLPGASQL   70 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CGGGHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCcHHHHHHH
Confidence            34566789999999999999999999      8999999999999999999999999999999      88888888888


Q ss_pred             HHHHHHcCCHHHHH
Q 020735          296 ADCYTELGDLERAA  309 (322)
Q Consensus       296 g~~y~~~gd~e~A~  309 (322)
                      +.++...++.+++.
T Consensus        71 ~~ll~a~~~~~~a~   84 (264)
T d1zbpa1          71 RHLVKAAQARKDFA   84 (264)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHhccccHHHH
Confidence            88887766665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.77  E-value=0.00011  Score=62.52  Aligned_cols=93  Identities=15%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          210 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       210 ~~~~~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      .+++++|..++..+|+++|+++|+++.+.  .      ...++++||.+|..    ..++..|..+++++...       
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-------   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--K------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--C------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-------
Confidence            47889999999999999999999999763  2      45689999999998    77999999999997644       


Q ss_pred             chHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          286 SGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       286 ~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                       ..+.+..++|..+..    ..+.++|..+++++.+.
T Consensus        68 -~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~  103 (265)
T d1ouva_          68 -NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  103 (265)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -cccchhhccccccccccccchhhHHHHHHHhhhhhh
Confidence             245667888888875    56889999999988753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=0.00022  Score=62.31  Aligned_cols=92  Identities=16%  Similarity=0.104  Sum_probs=43.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCCchHHHHH
Q 020735          214 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQ-RQGKYREAIKYHSMVLQISEREGEYSGSTEAY  292 (322)
Q Consensus       214 ~la~~y~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~-~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~  292 (322)
                      ..+......+++++|...|+++++..+.      ....+...+.... ..|+.+.|...|+++++.      .|.....+
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~~~~~------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~------~p~~~~~w  206 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------YGDIPEYV  206 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH------HTTCHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------hhhhHHHH
Confidence            3344444455555555555555544443      2222333333322 234555555555555544      33334444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 020735          293 GAIADCYTELGDLERAARFYDKYIS  317 (322)
Q Consensus       293 ~~Lg~~y~~~gd~e~A~~~~~kAl~  317 (322)
                      ...+......|++++|...|+++++
T Consensus       207 ~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         207 LAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4445555555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=0.00037  Score=53.22  Aligned_cols=68  Identities=15%  Similarity=0.113  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          249 KKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       249 ~~a~~~LG~~~~~~g---d~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ..+.++.|+++....   +.++||..++++++.     ++....+++|+||..|..+|+|++|..+++++|++-+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            566777777777554   456788888887765     22345689999999999999999999999999987654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.46  E-value=0.00038  Score=58.91  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 020735          210 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       210 ~~~~~la~~y~~----~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~----~gd~~eAi~~~~kaL~l~~~  281 (322)
                      .++..+|..|..    ..+...+..+++.+.+.  .      ...++++||..|..    ..++++|+.+|+++.+.   
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~---  211 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--K------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---  211 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhccccc--c------ccccccchhhhcccCcccccchhhhhhhHhhhhcc---
Confidence            356778888886    45666777777776652  2      46788999999997    77999999999998765   


Q ss_pred             cCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 020735          282 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  318 (322)
Q Consensus       282 ~~d~~~~a~a~~~Lg~~y~~----~gd~e~A~~~~~kAl~i  318 (322)
                           +.+.++++||.+|..    ..|+++|.++|++|.+.
T Consensus       212 -----g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         212 -----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             -----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence                 236789999999986    44899999999999865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.00071  Score=51.55  Aligned_cols=79  Identities=11%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCC
Q 020735          209 LLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  285 (322)
Q Consensus       209 a~~~~~la~~y~~~g---~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~  285 (322)
                      ..+.++.|.+..+..   +.++++..+++++...+.     ....++|+||..|+++|+|++|..+++++|++      .
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-----~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i------e  103 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-----RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------E  103 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------C
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-----hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc------C
Confidence            457778888887654   456889999988875543     14578999999999999999999999999999      7


Q ss_pred             chHHHHHHHHHHH
Q 020735          286 SGSTEAYGAIADC  298 (322)
Q Consensus       286 ~~~a~a~~~Lg~~  298 (322)
                      |....+....-.+
T Consensus       104 P~n~qA~~L~~~I  116 (124)
T d2pqrb1         104 RNNKQVGALKSMV  116 (124)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            7766665544433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.0022  Score=55.62  Aligned_cols=123  Identities=11%  Similarity=0.039  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHhHhhhcccCCCCCccccccCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Q 020735          174 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  252 (322)
Q Consensus       174 ~~e~al~~y~~al~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~y-~~~g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~  252 (322)
                      ..+.+.+.|.+++...+.                ....+...|... ...++.+.|...|+++++..+.      ....+
T Consensus       149 ~~~~ar~i~~~al~~~~~----------------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~------~~~~w  206 (308)
T d2onda1         149 GIKSGRMIFKKAREDART----------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYV  206 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTC----------------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHH
T ss_pred             ChHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh------hHHHH
Confidence            445666777777766554                223444556554 4468999999999999998887      66778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 020735          253 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  321 (322)
Q Consensus       253 ~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~-~~a~a~~~Lg~~y~~~gd~e~A~~~~~kAl~i~e~  321 (322)
                      ...+......|++++|...|++++....   .++ .....+..........|+.+.+...++++.+++++
T Consensus       207 ~~y~~~~~~~g~~~~aR~~fe~ai~~~~---~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         207 LAYIDYLSHLNEDNNTRVLFERVLTSGS---LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHSSS---SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            8888889999999999999999987522   122 22345666666677889999999999999888754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.74  E-value=0.0012  Score=50.40  Aligned_cols=78  Identities=27%  Similarity=0.339  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-
Q 020735          223 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  301 (322)
Q Consensus       223 g~~~~Al~~~~kAl~l~~~~~d~~~~~~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~~~d~~~~a~a~~~Lg~~y~~-  301 (322)
                      .|+++|+.+|+++.+..        ...++++||.  ....++++|+++++++.+.        +.+.+.++||..|.. 
T Consensus         7 kd~~~A~~~~~kaa~~g--------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--------EMFGCLSLVS--NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHCC--------Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--------cchhhhhhHHHhhhhc
Confidence            37899999999987642        2345666764  4567899999999998644        346789999999987 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 020735          302 ---LGDLERAARFYDKYISR  318 (322)
Q Consensus       302 ---~gd~e~A~~~~~kAl~i  318 (322)
                         ..|+++|.++|+++.+.
T Consensus        69 ~~~~~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          69 KYVKKDLRKAAQYYSKACGL   88 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHHHHHhhhhcc
Confidence               67899999999999764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.24  E-value=2.6  Score=28.46  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 020735          250 KAARGLGASLQRQGKYREAIKYHSMVLQISER  281 (322)
Q Consensus       250 ~a~~~LG~~~~~~gd~~eAi~~~~kaL~l~~~  281 (322)
                      .-+-.-+..+...|+|++||+++++|.....+
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            33444556666677777777777766655443