Citrus Sinensis ID: 020751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Secondary Structure (PSIPRED)
cccEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEEEEHHHHHEEEEcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHcccccHEEccccEEcccccccccHHHcccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLGFFSCVSGILTSVLakegrlssvsdavgGTLKIVSKLikqddpgpsdrKLFNDLLAEVSSVQQELshvprsviietssgsgtgakkYGVIVVIVAVGYGYVwwkgwklpdmmfATRRSLSDACNSVARQLEDVYSSISAAQRQLSSkitsvdrdvNKIVEISQATQEEVTILRGrskligdefQSVRDIVQTLESKLIEIegkqdittLGVKKLCDRArelengrptelvqasrytlsrttlelpgitpssrsgslhplpleppspsxxxxxxxipmdlirltgrivsrplASRSSMELQNWGSHQGVLRFLMVLQLQKT
Flexible Loop (DISEMBL)
MLGFFSCVSGILTSvlakegrlssvsdavggTLKIVSklikqddpgpSDRKLFNDLLAEVSSVqqelshvprsviietssgsgtgakkyGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQrqlsskitsvdrdvNKIVeisqatqeevtilrgrskligdefqSVRDIVQTLESKlieiegkqdittlgVKKLCDRarelengrptelvqasrytlsrttlelpgitpssrsgslhplpleppspsxxxXXXXIPMDLIRLTGRIVSRPlasrssmelqnWGSHQGVLRFLMVLQLQKT
Low Complexity Region (SEG)
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTgakkygvivvivavgygyvWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRSGslhplpleppspsxxxxxxxipMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Disordered region (IsUnstruct)
**GFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLI***************LL***************SVIIE******TGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSI*************VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA*******************************************************XIPMDLIRLTGRIVSRP********LQNWGSHQGVLRFLMVLQ****
Disordered Region (DISOPRED)
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGG*************************LAEVSSVQQE*********************KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI**AT***VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA********************************************************IPMDLIRLTGRIVSRPL**********WGSHQGVLRFLMVLQLQ**
Disordered Region (DISEMBL)
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Disordered Region (DISPRO)
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIK********RKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE***************************************************XIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSMELQNWGSHQGVLRFLMVLQLQKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
225425366	360	PREDICTED: uncharacterized protein LOC10	0.782	0.7	0.561	4e-59
326417169	360	B-zip transcription factor [Vitis pseudo	0.782	0.7	0.561	5e-59
289466339	360	B-zip transcription factor [Vitis pseudo	0.782	0.7	0.561	2e-58
297738479	361	unnamed protein product [Vitis vinifera]	0.763	0.681	0.562	1e-57
397746441	362	bZIP9 [Tamarix hispida]	0.804	0.715	0.501	6e-57
449445554	366	PREDICTED: uncharacterized protein LOC10	0.760	0.669	0.526	5e-54
224072554	363	predicted protein [Populus trichocarpa]	0.701	0.622	0.556	6e-52
255578294	368	DNA binding protein, putative [Ricinus c	0.704	0.616	0.515	8e-52
407970990	349	bZIP transcription factor bZIP56 precurs	0.844	0.779	0.456	2e-50
116789686	376	unknown [Picea sitchensis]	0.804	0.688	0.436	1e-49

>gi|225425366|ref|XP_002270179.1| PREDICTED: uncharacterized protein LOC100248973 [Vitis vinifera]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 178/253 (70%), Gaps = 1/253 (0%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
           +GI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND LLA+V+S++QEL
Sbjct: 14  AGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKNDALLAQVNSLRQEL 73

Query: 68  SHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNS 127
             +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMMFATRRSLSDAC+S
Sbjct: 74  QILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMMFATRRSLSDACSS 133

Query: 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187
           +A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  LRG  K+IG +  S
Sbjct: 134 IAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFELRGGMKMIGGDVAS 193

Query: 188 VRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELP 247
           V+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QAS  +  R  LEL 
Sbjct: 194 VQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQASPSSSFRPALELR 253

Query: 248 GITPSSRSGSLHP 260
             TP  R+ SL P
Sbjct: 254 QTTPPLRTESLPP 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326417169|gb|ADZ73426.1| B-zip transcription factor [Vitis pseudoreticulata]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 178/253 (70%), Gaps = 1/253 (0%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
           +GI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND LLA+V+S++QEL
Sbjct: 14  AGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKNDALLAQVNSLRQEL 73

Query: 68  SHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNS 127
             +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMMFATRRSLSDAC+S
Sbjct: 74  QILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMMFATRRSLSDACSS 133

Query: 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187
           +A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  LRG  K+IG +  S
Sbjct: 134 IAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFELRGGMKMIGGDVAS 193

Query: 188 VRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELP 247
           V+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QAS  +  R  LEL 
Sbjct: 194 VQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQASPSSSFRPALELR 253

Query: 248 GITPSSRSGSLHP 260
             TP  R+ SL P
Sbjct: 254 QTTPPLRTESLPP 266

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|289466339|gb|ADC94855.1| B-zip transcription factor [Vitis pseudoreticulata]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 178/253 (70%), Gaps = 1/253 (0%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
           +GI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND LLA+V+S++QEL
Sbjct: 14  AGIVGSVLAKEGRMSDVSNFFSGAPKIALKQLKQDDSTSPTVKPKNDALLAQVNSLRQEL 73

Query: 68  SHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNS 127
             +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMMFATRRSLSDAC+S
Sbjct: 74  QILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMMFATRRSLSDACSS 133

Query: 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187
           +A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  LRG  K+IG +  S
Sbjct: 134 IAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFELRGGMKMIGGDVAS 193

Query: 188 VRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELP 247
           V+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QAS  +  R  LEL 
Sbjct: 194 VQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQASPSSSFRPALELR 253

Query: 248 GITPSSRSGSLHP 260
             TP  R+ SL P
Sbjct: 254 QTTPPLRTESLPP 266

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738479|emb|CBI27680.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 139/247 (56%), Positives = 174/247 (70%), Gaps = 1/247 (0%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
           +GI+ SVLAKEGR+S VS+   G  KI  K +KQDD      K  ND LLA+V+S++QEL
Sbjct: 14  AGIVGSVLAKEGRMSDVSNFFSGAFKIALKQLKQDDSTSPTVKPKNDALLAQVNSLRQEL 73

Query: 68  SHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNS 127
             +  +  I   + SGTG  KYGV+V+IV VGYGY WWKGWKLPDMMFATRRSLSDAC+S
Sbjct: 74  QILASNRSITIVTASGTGKSKYGVVVIIVVVGYGYAWWKGWKLPDMMFATRRSLSDACSS 133

Query: 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187
           +A+QLE+VYSSI+A +R LSS+I  VD  +++  E++ AT+EEV  LRG  K+IG +  S
Sbjct: 134 IAKQLENVYSSIAATKRHLSSRIDRVDCSIDEFAELTSATKEEVFELRGGMKMIGGDVAS 193

Query: 188 VRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELP 247
           V+  VQ LESK+IEIEGKQDIT  G+ +LC  A  LEN R TE +QAS  +  R  LEL 
Sbjct: 194 VQKAVQNLESKIIEIEGKQDITNEGLGRLCHYAWNLENSRTTERIQASPSSSFRPALELR 253

Query: 248 GITPSSR 254
             TP  R
Sbjct: 254 QTTPPLR 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397746441|gb|AFO63288.1| bZIP9 [Tamarix hispida]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 180/267 (67%), Gaps = 8/267 (2%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
           +GI+ SVLAKEGR+  VSD + G  +I  K +KQ D  PS  K  +D L+A+++S++QEL
Sbjct: 14  AGIVGSVLAKEGRMPGVSDILSGAFQIALKPLKQSDSSPSSSKPKSDALMAQINSLRQEL 73

Query: 68  SHVP--RSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDAC 125
             +   RS+ I TS GS  G + YG+I+VIV  GYGY+WWKGWKLPD+ FATRR LSDAC
Sbjct: 74  QLLSGGRSITIVTS-GS-RGGRPYGIIIVIVVAGYGYIWWKGWKLPDLSFATRRGLSDAC 131

Query: 126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185
           +++A+QLE VYSS+SA +R LS KI  VD  +N   E   +TQ+EVT L+G  K  GD F
Sbjct: 132 SAIAKQLEQVYSSLSATRRDLSRKIERVDCSLNDCTENIASTQQEVTELQGEVKTFGDSF 191

Query: 186 QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLE 245
           QSVR +V+ LES++  ++GK++ T + V KL + A+ LE       +Q S  + SR  LE
Sbjct: 192 QSVRHVVKALESRVSRMQGKEEATHVKVMKLVNTAKSLEGSAQAGFLQGSSTSASRPALE 251

Query: 246 LPGITPSSRSGSLHP---LPLEPPSPS 269
            P +T SSR+ SL P   + LEPPSPS
Sbjct: 252 HPQMTTSSRAVSLPPCNRISLEPPSPS 278

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445554|ref|XP_004140537.1| PREDICTED: uncharacterized protein LOC101217504 [Cucumis sativus]

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/247 (52%), Positives = 171/247 (69%), Gaps = 2/247 (0%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
           +GI+ SVLAKEGRL  V D V G  KI  + I +DD   S  K  ND L+A+V S+++EL
Sbjct: 14  AGIVGSVLAKEGRLPYVQDFVSGAFKIALRRISRDDSSTSKTKPRNDSLMAQVKSLREEL 73

Query: 68  SHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNS 127
             +  +  +   +  G G +KYGVI+++V VGYG +W KGWKLPDMMFAT+RSL+DAC S
Sbjct: 74  QMLASNRQMTIVTTGGRGGRKYGVIILVVVVGYGIIWMKGWKLPDMMFATKRSLADACTS 133

Query: 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187
           VARQLE+VYSSI+A +R LSSK+ SVD+ +++ ++++  TQE+V+ LRGRS+  G + +S
Sbjct: 134 VARQLENVYSSIAATKRNLSSKMDSVDKSLDETLDVTTDTQEQVSELRGRSETFGRDIKS 193

Query: 188 VRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELP 247
           V   VQTLE+KL   EGKQD T  GVKKLC+ A +LEN R  E  QA     SR  LELP
Sbjct: 194 VHHAVQTLENKLCTFEGKQDRTYEGVKKLCNYAIDLENKRTAERTQAIPSGPSRQVLELP 253

Query: 248 GITPSSR 254
             TPS +
Sbjct: 254 -PTPSPK 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072554|ref|XP_002303779.1| predicted protein [Populus trichocarpa] gi|222841211|gb|EEE78758.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/230 (55%), Positives = 166/230 (72%), Gaps = 4/230 (1%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLF---ND-LLAEVSSVQ 64
           +GIL SVLAKEGRL  VS+ V G  KI  + +KQDD   S  K     ND L+A+V+S++
Sbjct: 14  AGILGSVLAKEGRLPDVSNFVSGAFKIAFRQLKQDDSTSSVSKSSKPPNDSLMAQVNSLR 73

Query: 65  QELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDA 124
           QEL  +  S  +   + +GTG+ KYGV++V+V VGYGYVWWKGWKLPDMMFATRRSLSDA
Sbjct: 74  QELQMLASSRPVTIVTANGTGSNKYGVVIVVVVVGYGYVWWKGWKLPDMMFATRRSLSDA 133

Query: 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184
           C S+A+QLE+VY+SI + +R LSSKI  VD ++N + E++ +TQE+V  LR  S  IG++
Sbjct: 134 CTSIAQQLENVYASIRSTRRHLSSKIDGVDSNLNAVAELTASTQEKVIELREDSSRIGND 193

Query: 185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 234
            + VRD V+TLE K+  IEGKQD+TT GVK+LCD A  LEN    E +QA
Sbjct: 194 VRYVRDAVETLELKISRIEGKQDLTTQGVKRLCDYASSLENNLLEENIQA 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578294|ref|XP_002530014.1| DNA binding protein, putative [Ricinus communis] gi|223530493|gb|EEF32376.1| DNA binding protein, putative [Ricinus communis]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 118/229 (51%), Positives = 148/229 (64%), Gaps = 2/229 (0%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQE 66
           +GIL SVLAKEGRL SVSD V G  KI  K IK  D   S +    D  L+A+V+S+QQE
Sbjct: 14  AGILGSVLAKEGRLPSVSDFVSGAFKIAFKQIKPQDSNSSSKSKPIDASLIAQVNSLQQE 73

Query: 67  LSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACN 126
           L  +  +  I   + SGTGA KYG IV+IV VGYGYVWWKGWKLPDMMFATRRSLSDAC 
Sbjct: 74  LQLLASNRPITIVTASGTGAGKYGTIVLIVVVGYGYVWWKGWKLPDMMFATRRSLSDACT 133

Query: 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186
           S+A+QLE+VY SI + +R+LSS I  +D  ++++  ++  T+E+V  L   S    ++ +
Sbjct: 134 SIAQQLENVYGSIRSTRRELSSNIEHMDATLDQVAALTANTREKVAELLEDSARYDNDVR 193

Query: 187 SVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQAS 235
           +V   VQ L  K+  IE KQ  T  GVKKL D    LEN    E  QAS
Sbjct: 194 NVHQTVQMLGQKISRIEEKQSFTMHGVKKLVDFTYNLENNLLQENTQAS 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407970990|ref|NP_001236992.1| bZIP transcription factor bZIP56 precursor [Glycine max] gi|113367178|gb|ABI34646.1| bZIP transcription factor bZIP56 [Glycine max]

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/278 (45%), Positives = 179/278 (64%), Gaps = 6/278 (2%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKL-FND-LLAEVSSVQQE 66
           +GI  SV+AKEGRL  VS    G  K+V + +K DDP P+ +K   ND LLA+V+S++QE
Sbjct: 14  AGIAGSVIAKEGRLPDVSGLASGAFKVVLRQLKSDDPAPTVKKQPHNDALLAQVNSLRQE 73

Query: 67  LSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACN 126
           L  + R   I   + SGTG +KY  ++VIV VGYGYVWWKGWKLPD+MFATRR LSDAC 
Sbjct: 74  LQLLARDRSITIVNASGTGGRKYITVIVIVVVGYGYVWWKGWKLPDLMFATRRGLSDACT 133

Query: 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186
           S+  Q+  +Y SI   +++LS++I  +D+++ +   I+++T+E++ +++ ++  I ++ +
Sbjct: 134 SIGNQMGKLYESIGDTKKKLSARINGLDKNLEECAAITESTREDIYVIQRKADTISEDSK 193

Query: 187 SVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLEL 246
           S    V  LESK+ EIE KQ  T  GV  LC   + LEN R TE +QAS  + SR  LEL
Sbjct: 194 SFHVAVHVLESKIKEIEEKQVATIEGVNMLCQFTKTLENSRSTEYIQASSSSSSRPALEL 253

Query: 247 PGITPSSR---SGSLHPLPLEPPSPSXXXXXXXIPMDL 281
           P ++PSSR   SGS   L LEPPS +       +P  L
Sbjct: 254 PPVSPSSRGSQSGSAR-LSLEPPSVTPSSRTASLPPTL 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789686|gb|ABK25342.1| unknown [Picea sitchensis]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/268 (43%), Positives = 166/268 (61%), Gaps = 9/268 (3%)

Query: 9   SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELS 68
           +GI  SVLA EG+ S VSD   G  K++ K +K+D+    +      L+A+V+S++QEL 
Sbjct: 14  AGIAGSVLANEGQFSKVSDFFSGAFKVILKHLKEDESQLKEASNDTSLMAQVNSLRQELK 73

Query: 69  HVPRSVIIETSSG-SGTGAKKYGVIVVIVAV-GYGYVWWKGWKLPDMMFATRRSLSDACN 126
            +  S  I   +G S +G   Y V V+++ V GYGY+WWKGWKL DMMFATRRSLS+AC 
Sbjct: 74  MLASSRSITVVTGNSQSGTTTYAVPVIVIGVAGYGYIWWKGWKLSDMMFATRRSLSEACA 133

Query: 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186
           SV +QL+ V +SI+AA+R LS +I  VD  +++  E++ AT++EV  LRG  K IG + +
Sbjct: 134 SVGKQLDQVSTSITAAKRHLSLRIDCVDNSLDQCAELNAATKDEVFELRGDLKHIGFDVE 193

Query: 187 SVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLEL 246
           SV+  VQ LE K+  IEGKQD+T  GV  LC    +LE  + T+++Q S  + S+  LE 
Sbjct: 194 SVQRAVQGLEFKIGRIEGKQDLTNQGVYHLCQFVHKLEERKHTQIIQVS--SSSKPALEN 251

Query: 247 PGITPSSRSGS-----LHPLPLEPPSPS 269
                ++ SG        PL LEP S +
Sbjct: 252 SKSASNAFSGHQASSSSSPLALEPASSA 279

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:1005716745	344	AT1G24267 "AT1G24267" [Arabido	0.754	0.706	0.438	1.6e-40
TAIR|locus:2010602	334	AT1G04960 "AT1G04960" [Arabido	0.701	0.676	0.257	8e-21
TAIR|locus:2205734	304	AT1G27000 "AT1G27000" [Arabido	0.636	0.674	0.233	9.7e-15
TAIR|locus:2058832	276	AT2G02730 "AT2G02730" [Arabido	0.704	0.822	0.215	3e-12

TAIR|locus:1005716745 AT1G24267 "AT1G24267" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 110/251 (43%), Positives = 149/251 (59%)

Query:     9 SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
             +G++ SVLAKEG L  VS  V G LK+V + +KQ++P  S  K  ND L+A+V+S++ EL
Sbjct:    14 AGLVGSVLAKEGSLPDVSSFVSGALKMVFRQLKQEEPAKSASKPRNDTLMAQVNSLRHEL 73

Query:    68 SHVP--RSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDAC 125
             S +   R + I T++GSG                    WWKGWKLPD+MFATRRSLSDAC
Sbjct:    74 SLLSSNRPITIVTTAGSG--GKKYGYIIIIGVIGYGYVWWKGWKLPDLMFATRRSLSDAC 131

Query:   126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185
             NSV  Q++  Y+S+S  +++LSSKI  + R ++   EI Q T  EV  L+  ++ I D+ 
Sbjct:   132 NSVGSQIDGFYTSLSGTKKELSSKIDGMGRSLDANTEIIQDTGREVMELQRGTENIKDDV 191

Query:   186 QSVRDIVQTLESKLI-EIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTL 244
             + V D V+ L  KLI  IEG QDIT  GV  L  + RE  N R  E  +A   T +   L
Sbjct:   192 KFVFDAVENLVRKLIYRIEGNQDITLKGVGALHAQVRE--NKRIQESNKALPSTSAVPAL 249

Query:   245 ELPGITPSSRS 255
             E   +TPSSR+
Sbjct:   250 EAAPMTPSSRT 260

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

TAIR|locus:2010602 AT1G04960 "AT1G04960" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 59/229 (25%), Positives = 112/229 (48%)

Query:     5 FSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQ 64
             F  V G+  S++ + GRLS +   +   L     +  +  P   D  L    + ++++  
Sbjct:    31 FHHVQGVSGSIVLRHGRLSDLIAQLQDLLNGAQGV--ESTPFKYDGALLAAQIRQLANEI 88

Query:    65 QELSHVPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDA 124
             +EL+      I    S S                     WWKGW   D MF T+++++DA
Sbjct:    89 KELTMTNPVTIFNGDSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADA 148

Query:   125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184
               SV++QL+D+  ++++ ++ LS K+ ++D  V +  E S+    +VT +R     IG +
Sbjct:   149 VASVSKQLDDLSDTLASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFD 208

Query:   185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 233
             F+ + +++  +E K+  +E KQD+T  G+  LC  A  +++   T++ Q
Sbjct:   209 FKQLNEMISGIEGKIESLESKQDVTLSGLWHLCQVAG-VKDSTSTKVFQ 256

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2205734 AT1G27000 "AT1G27000" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 9.7e-15, P = 9.7e-15
 Identities = 49/210 (23%), Positives = 99/210 (47%)

Query:     4 FFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSV 63
             F    +G   +++ K G+LS   D +G    +V  + K  +    D  + + + A+V  +
Sbjct:    13 FLLAGAGYTGTIMMKNGKLS---DLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVRRL 69

Query:    64 QQELSHVPRSVIIETSSG-SGTXXXXXXX-XXXXXXXXXXXXWWKGWKLPDMMFATRRSL 121
               E+  +     I   +G SG                     WWKG    D+M+ T+ ++
Sbjct:    70 AMEIRQLASQQHITVMNGVSGANLQALAVPAAALGALGYGYMWWKGLSFTDLMYVTKANM 129

Query:   122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 181
             + A  ++ + LE V  +++AA+R L+ +I ++D  V K +++S+    +V   R     +
Sbjct:   130 AAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKVEKQIDLSKEINSQVISARENISSL 189

Query:   182 GDEFQSVRDIVQTLESKLIEIEGKQDITTL 211
               + +S+ +++  L+ KL  +E KQD+T +
Sbjct:   190 EMDLESLHNLITGLDGKLDTLEYKQDVTNV 219

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058832 AT2G02730 "AT2G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 50/232 (21%), Positives = 104/232 (44%)

Query:     9 SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELS 68
             +G  +++L K G+++   D +G    +V +  K  D    D       +  ++   ++L+
Sbjct:    18 AGYTSTILVKNGKMA---DILGELQALVKRFEKSGDHVDDDSDAMTTQMQRLAMEVRQLA 74

Query:    69 HVPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDACNSV 128
                R + +   +                       W+KG    D+M  T+R++ +A +++
Sbjct:    75 S-SRQITVMNGAQGADFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNMENAVSNL 133

Query:   129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 188
              + L+ V  +I  A++ LS ++  VD  ++   ++ +  Q+ V +       IGD+F ++
Sbjct:   134 TKHLDTVSEAILNAKKHLSQRLQKVDDKLDLQKDLLKGVQDNVGLALEDLANIGDDFDAM 193

Query:   189 RDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS 240
               I   +  KL  IE KQ+I  +G+  LCD     EN +  +++   +  LS
Sbjct:   194 HSIFGGMGGKLDSIEYKQNIANMGLIYLCDSLGG-ENHKMPDILMQEKLRLS 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      322       281   0.00083  115 3  11 22  0.39    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.82u 0.30s 21.12t   Elapsed:  00:00:01
  Total cpu time:  20.82u 0.30s 21.12t   Elapsed:  00:00:01
  Start:  Fri May 10 06:54:13 2013   End:  Fri May 10 06:54:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002774001 SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
pfam07889	125	pfam07889, DUF1664, Protein of unknown function (D	2e-47

>gnl|CDD|203795 pfam07889, DUF1664, Protein of unknown function (DUF1664)

 Score =  155 bits (393), Expect = 2e-47
 Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 3/126 (2%)

Query: 83  GTGAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS 140
           G+G +KY ++    + A+GYGY+WWKGW   D+MF T+R++SDA  SV +QLE V  SI+
Sbjct: 1   GSG-RKYLIVPAAALGALGYGYMWWKGWSFSDLMFVTKRNMSDAVASVGKQLEKVSESIA 59

Query: 141 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200
           AA++ LS +I ++D  +++  EIS++T++EVT +R     IG++ +SV   V+ LE KL 
Sbjct: 60  AAKKHLSQRIDNLDDKLDEQKEISESTRDEVTEIREDLSNIGEDVKSVHQAVEGLEGKLD 119

Query: 201 EIEGKQ 206
            IE KQ
Sbjct: 120 SIEYKQ 125

The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	100.0
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	96.93
PRK10884	206	SH3 domain-containing protein; Provisional	95.93
PF04375	372	HemX: HemX; InterPro: IPR007470 The majority of pr	95.77
KOG2629	300	consensus Peroxisomal membrane anchor protein (per	95.28
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	94.61
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.48
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	93.44
PHA02562	562	46 endonuclease subunit; Provisional	93.1
PRK11637	428	AmiB activator; Provisional	92.99
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	92.63
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.62
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	92.25
PF10158	131	LOH1CR12: Tumour suppressor protein; InterPro: IPR	91.63
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	91.53
PRK11637	428	AmiB activator; Provisional	91.47
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	91.12
PRK10920	390	putative uroporphyrinogen III C-methyltransferase;	90.99
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	90.77
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.26
PF06419	618	COG6: Conserved oligomeric complex COG6; InterPro:	89.75
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	89.65
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	89.58
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	89.01
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	88.25
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.16
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	87.75
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	86.92
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	86.42
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	86.29
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.26
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	86.01
PRK04778	569	septation ring formation regulator EzrA; Provision	85.85
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	85.75
PRK06975	656	bifunctional uroporphyrinogen-III synthetase/uropo	85.49
PHA02562	562	46 endonuclease subunit; Provisional	85.44
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	85.29
PF04513	140	Baculo_PEP_C: Baculovirus polyhedron envelope prot	84.95
TIGR02132	189	phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR	84.78
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	83.87
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	83.86
PF10241	88	KxDL: Uncharacterized conserved protein; InterPro:	83.41
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	83.31
COG4942	420	Membrane-bound metallopeptidase [Cell division and	83.3
PRK10884	206	SH3 domain-containing protein; Provisional	83.27
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	83.02
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	82.92
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.49
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	82.43
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	82.42
smart00283	262	MA Methyl-accepting chemotaxis-like domains (chemo	82.33
PRK04778	569	septation ring formation regulator EzrA; Provision	82.3
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	82.08
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	81.44
PRK13182	175	racA polar chromosome segregation protein; Reviewe	81.27
PRK09039	343	hypothetical protein; Validated	81.17
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	80.62
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	80.01

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=100.00  E-value=8.4e-59  Score=394.06  Aligned_cols=120  Identities=48%  Similarity=0.775  Sum_probs=116.4

Q ss_pred             chHHH-HHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 020751           87 KKYGV-IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ  165 (322)
Q Consensus        87 ~~y~l-~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~  165 (322)
                      ..|++ +|++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|+|+++
T Consensus         6 ~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~   85 (126)
T PF07889_consen    6 SSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK   85 (126)
T ss_pred             cchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455 68999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751          166 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  206 (322)
Q Consensus       166 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ  206 (322)
                      +|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus        86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q  126 (126)
T PF07889_consen   86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ  126 (126)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999998

The region featured in this family is approximately 100 amino acids long.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=96.93  E-value=0.0018  Score=53.77  Aligned_cols=88  Identities=17%  Similarity=0.329  Sum_probs=44.6

Q ss_pred             HHHHHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-
Q 020751           89 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-  167 (322)
Q Consensus        89 y~l~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i-  167 (322)
                      ++++.++.+++|++.||+   ++- =||+|..+..                      |.+|+++.|.++++...-.+.+ 
T Consensus         9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP   62 (106)
T PF10805_consen    9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP   62 (106)
T ss_pred             cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555556777777774   222 3777655543                      2333333444444433333343 


Q ss_pred             -HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          168 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       168 -~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                       +++|..++..++++.+|++.+...+.+++-.++.+
T Consensus        63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence             55555555555555555555555555554444433

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.93  E-value=0.27  Score=45.56  Aligned_cols=99  Identities=13%  Similarity=0.246  Sum_probs=74.5

Q ss_pred             heeeEEe----ccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751           99 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL  174 (322)
Q Consensus        99 GYgYmwW----KGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v  174 (322)
                      ||+++.-    .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+...+.+|-..+..++++.......+++|-..+
T Consensus        66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L  144 (206)
T PRK10884         66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL  144 (206)
T ss_pred             CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888873    378 55555566778999999999999999999999999999999999888888776666666665555


Q ss_pred             hcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751          175 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGK  205 (322)
Q Consensus       175 ~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k  205 (322)
                      +       .+++..+.-+..|+.+++.+..+
T Consensus       145 ~-------~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        145 K-------NQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4       45555666666666777666654

>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2

Probab=95.77  E-value=0.077  Score=52.31  Aligned_cols=10  Identities=40%  Similarity=0.956  Sum_probs=7.4

Q ss_pred             hhhheeeEEe
Q 020751           96 VAVGYGYVWW  105 (322)
Q Consensus        96 GavGYgYmwW  105 (322)
                      .++|+||.||
T Consensus        41 ~alg~~~~~~   50 (372)
T PF04375_consen   41 LALGAGGWYW   50 (372)
T ss_pred             HHHHHHHHHH
Confidence            6678887767

1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].

>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.28  E-value=0.059  Score=52.71  Aligned_cols=102  Identities=15%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             HHHHHHH---HHHHHhcC-CCceEEEeCCC----------CCCCCchHHH-HHHHhhhhee-eEEeccCCcCchhhhhhh
Q 020751           56 LLAEVSS---VQQELSHV-PRSVIIETSSG----------SGTGAKKYGV-IVVIVAVGYG-YVWWKGWKLPDMMFATRR  119 (322)
Q Consensus        56 L~aQV~~---LaqElr~L-sR~ITVvn~~s----------sg~gg~~y~l-~a~iGavGYg-YmwWKGwsfSDlMfVTKR  119 (322)
                      |.-..++   .++|++.. ..+-+|+-++.          ..+-++-|++ +++.+++-|+ |-.||-| +-=+||.-.+
T Consensus        39 I~eAfk~~gi~~~d~s~~~p~~~~~~~~~p~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~  117 (300)
T KOG2629|consen   39 IQEAFKRDGIPAQDVSKQIPTANQVVSGGPPLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESK  117 (300)
T ss_pred             HHHHHHhcCCccccccccCCCcccccCCCchhhhcCCCccchhhHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccc
Confidence            5555665   77777755 32222322210          0222446776 4555667774 8889999 4445665544


Q ss_pred             h--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 020751          120 S--------LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN  158 (322)
Q Consensus       120 n--------MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klD  158 (322)
                      +        |.+=...+.|-+.++-+.++..++.++..-+.++..|+
T Consensus       118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~  164 (300)
T KOG2629|consen  118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALA  164 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4        33333344444444444444444444433333333333

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=94.61  E-value=0.23  Score=42.03  Aligned_cols=82  Identities=17%  Similarity=0.264  Sum_probs=46.4

Q ss_pred             hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751          114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ  193 (322)
Q Consensus       114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~  193 (322)
                      =|||++-+...=.+--.-|..+-..|...  ....+|+-|..+.+.|-|-++..+.++.       .-|.-++.|-....
T Consensus        21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~   91 (102)
T PF01519_consen   21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQ   91 (102)
T ss_dssp             TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            39999998866544444455554444432  3444555555555555555555555554       44555666777777


Q ss_pred             HHHHHHHHhhh
Q 020751          194 TLESKLIEIEG  204 (322)
Q Consensus       194 ~Le~Ki~~iE~  204 (322)
                      .+..+||+||+
T Consensus        92 ~inkRLD~~E~  102 (102)
T PF01519_consen   92 SINKRLDKMES  102 (102)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHhhccC
Confidence            77788988874

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.48  E-value=3  Score=39.15  Aligned_cols=91  Identities=24%  Similarity=0.260  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751          121 LSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  199 (322)
Q Consensus       121 MsnAv~svtKqLe-qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki  199 (322)
                      |++|...|-.+.+ .+...-..+......+|+.+........+.....++|+.+++..+.....++++++.....||..|
T Consensus       167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l  246 (312)
T PF00038_consen  167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL  246 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence            8889999888877 445566688888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhHHhH
Q 020751          200 IEIEGKQDITTL  211 (322)
Q Consensus       200 ~~iE~kQd~Tn~  211 (322)
                      ..++..-+....
T Consensus       247 ~~le~~~~~~~~  258 (312)
T PF00038_consen  247 RELEQRLDEERE  258 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988865444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=93.44  E-value=1.3  Score=34.97  Aligned_cols=72  Identities=13%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             hHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751          131 QLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE  203 (322)
Q Consensus       131 qLeqVs~s---LaaaKrhLsqRId~vD~klDeq~eis~~i--~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE  203 (322)
                      .|+++.+.   +.....+|..+|+.+..+|+++.++....  -+.+. -..++.+|..+|.+++..+..|..|+..|+
T Consensus        15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~   91 (92)
T PF14712_consen   15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ   91 (92)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34444444   45567899999999999999999966544  34444 888999999999999999999999998775

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.10  E-value=1  Score=45.25  Aligned_cols=86  Identities=12%  Similarity=0.171  Sum_probs=62.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751          127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  206 (322)
Q Consensus       127 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ  206 (322)
                      .+..++++....+...++.+...|+.+..++++.....+.++.++..++.++.+++.+++.+...+..++.++..++.+-
T Consensus       192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l  271 (562)
T PHA02562        192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI  271 (562)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence            33334444445555566666677888888888888888888888888888888888888888888888888887777665


Q ss_pred             hHHhHH
Q 020751          207 DITTLG  212 (322)
Q Consensus       207 d~Tn~G  212 (322)
                      +.....
T Consensus       272 ~~~~~~  277 (562)
T PHA02562        272 EQFQKV  277 (562)
T ss_pred             HHHHHH
Confidence            444433

>PRK11637 AmiB activator; Provisional

Probab=92.99  E-value=1.4  Score=43.96  Aligned_cols=80  Identities=11%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751          121 LSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES  197 (322)
Q Consensus       121 MsnAv~svtKqLeqVs~sLa---aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~  197 (322)
                      ..+=...+-+++++....+.   ..++++.+.|+.++.++++..+-...++.++..+..+++....++...+.-+..++.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555544444   333445566666666666666666666666666666666666666666655555554


Q ss_pred             HHH
Q 020751          198 KLI  200 (322)
Q Consensus       198 Ki~  200 (322)
                      .+.
T Consensus       125 ~l~  127 (428)
T PRK11637        125 LLA  127 (428)
T ss_pred             HHH
Confidence            443

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=92.63  E-value=7  Score=39.57  Aligned_cols=21  Identities=33%  Similarity=0.303  Sum_probs=11.0

Q ss_pred             ccCcccccccCCCCCCCCCCC
Q 020751          236 RYTLSRTTLELPGITPSSRSG  256 (322)
Q Consensus       236 ~s~s~~~ale~~~~~p~sr~~  256 (322)
                      +-.|.+|+=|+||.-|-.|..
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~  544 (553)
T PRK15048        524 PQTPSRPASEQPPAQPRLRIA  544 (553)
T ss_pred             ccccccccccCCccCccCCcC
Confidence            444555565655555544443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.62  E-value=3  Score=38.78  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=57.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751          130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD  207 (322)
Q Consensus       130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd  207 (322)
                      +++.++......+..+..+||+..++.-++..+-.++.++|+..++.-.++...-+++.+.-+..|+.+++.++..+.
T Consensus        24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~  101 (251)
T PF11932_consen   24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ  101 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666677788888888888888888888888888777777777777777777777777777777775543

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=92.25  E-value=0.17  Score=50.09  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751          120 SLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE  196 (322)
Q Consensus       120 nMsnAv~svtKqLeqVs~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le  196 (322)
                      +|+.++.++...|..++..|++-+   .+|+..|..+...+.+.......++..|..+..|+.+.+.||-...-.|..||
T Consensus        67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe  146 (326)
T PF04582_consen   67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE  146 (326)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence            444455555555555554444433   34566777777777777777777788888888888888888888888888888


Q ss_pred             HHHHHhhhh
Q 020751          197 SKLIEIEGK  205 (322)
Q Consensus       197 ~Ki~~iE~k  205 (322)
                      .++..+|..
T Consensus       147 ~RV~~LEs~  155 (326)
T PF04582_consen  147 SRVKALESG  155 (326)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            888877754

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []

Probab=91.63  E-value=3.9  Score=35.66  Aligned_cols=50  Identities=20%  Similarity=0.399  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 020751          119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ  168 (322)
Q Consensus       119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~  168 (322)
                      |.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+....-+
T Consensus        27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq   76 (131)
T PF10158_consen   27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ   76 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788999999999999999999999999999999998876655544333

The exact function of these proteins is not known.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=91.53  E-value=3.3  Score=36.11  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 020751          135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT  172 (322)
Q Consensus       135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~  172 (322)
                      +++-+=.|||.|+.=...|..+||+.-|-...+|++++
T Consensus        30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs   67 (126)
T PF07889_consen   30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS   67 (126)
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777777777777777777666666666654

The region featured in this family is approximately 100 amino acids long.

>PRK11637 AmiB activator; Provisional

Probab=91.47  E-value=1.7  Score=43.27  Aligned_cols=78  Identities=13%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          126 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       126 ~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      +.+-++|+++...|...++.+.   .++..+..++++..+-...+.+++..++.+++.+..+++.++.-+..++.+|+..
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777766666665   6666666666666666666666666666666666666666666666666666655


Q ss_pred             h
Q 020751          203 E  203 (322)
Q Consensus       203 E  203 (322)
                      +
T Consensus       123 ~  123 (428)
T PRK11637        123 E  123 (428)
T ss_pred             H
Confidence            5

>smart00502 BBC B-Box C-terminal domain

Probab=91.12  E-value=2.4  Score=33.53  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=21.9

Q ss_pred             hhHHhHHHHHHHHHHHhhcc-CCCccceeccccC
Q 020751          206 QDITTLGVKKLCDRARELEN-GRPTELVQASRYT  238 (322)
Q Consensus       206 Qd~Tn~GV~~LC~f~~~~~~-~~~~~~~Q~~~s~  238 (322)
                      -......+..+|.|++..-. +...+++|..++.
T Consensus        84 l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i  117 (127)
T smart00502       84 LTQKQEKLSHAINFTEEALNSGDPTELLLSKKLI  117 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            33456778888999976544 4666777765543

Coiled coil region C-terminal to (some) B-Box domains

>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional

Probab=90.99  E-value=0.96  Score=45.74  Aligned_cols=67  Identities=13%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             CCchHHH--HHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751           85 GAKKYGV--IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK  159 (322)
Q Consensus        85 gg~~y~l--~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe  159 (322)
                      +|..+++  ++++-++|+||-|| |.       --.......-+.+..+|+.......+.+..|.+.+..++.++.+
T Consensus        35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~  103 (390)
T PRK10920         35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ  103 (390)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444  23344777777666 21       11112344444455555555444444444444444444333333

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=90.77  E-value=11  Score=33.58  Aligned_cols=98  Identities=20%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh-hhhhHHHHHH
Q 020751          115 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-LIGDEFQSVR  189 (322)
Q Consensus       115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrh----LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-~ig~Dv~~v~  189 (322)
                      ||||..+.+..-..-..+.++-..+....|+    |....+.|...+|..   -..+++|+..++.++. .|..+=..++
T Consensus        43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r  119 (177)
T PF07798_consen   43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR  119 (177)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6888888887777777777777666655554    333333344333332   2345555554444332 1111122444


Q ss_pred             HHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751          190 DIVQTLESKLIEIEGKQDITTLGVKK  215 (322)
Q Consensus       190 ~~V~~Le~Ki~~iE~kQd~Tn~GV~~  215 (322)
                      .....+|.||..++.+-+....++..
T Consensus       120 ~e~~~~~~ki~e~~~ki~~ei~~lr~  145 (177)
T PF07798_consen  120 EEQAKQELKIQELNNKIDTEIANLRT  145 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555544444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.26  E-value=5  Score=35.08  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751          145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD  207 (322)
Q Consensus       145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd  207 (322)
                      .|+.||+-|...||+...--+.+.+.+.++....+.+..-+..+..-...+|.|++.++.+-.
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            477788888888888888888888888888888888888888888888888888888876643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation

Probab=89.75  E-value=2.9  Score=44.18  Aligned_cols=88  Identities=17%  Similarity=0.286  Sum_probs=69.2

Q ss_pred             cCchhhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020751          110 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF  185 (322)
Q Consensus       110 fSDlMfV----TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv  185 (322)
                      ++++.|+    +||||...++   +.+=.....+-+.=+.+..+|+++...++++.+.-..|.+.+...+.+...+-.++
T Consensus         6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~   82 (618)
T PF06419_consen    6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA   82 (618)
T ss_pred             hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667776    8999876554   55566666666777788889999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 020751          186 QSVRDIVQTLESKLI  200 (322)
Q Consensus       186 ~~v~~~V~~Le~Ki~  200 (322)
                      +.++.--..+|.|-.
T Consensus        83 ~~L~~~~~~~~~k~~   97 (618)
T PF06419_consen   83 SELREQKEELELKKK   97 (618)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888755555555543

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=89.65  E-value=12  Score=32.20  Aligned_cols=15  Identities=7%  Similarity=0.337  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHhcC
Q 020751           56 LLAEVSSVQQELSHV   70 (322)
Q Consensus        56 L~aQV~~LaqElr~L   70 (322)
                      +..-++.++++.+.|
T Consensus        45 ~~~~i~~ia~qt~lL   59 (213)
T PF00015_consen   45 ILSLINEIAEQTNLL   59 (213)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHh
Confidence            777777888888777

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=89.58  E-value=4.4  Score=33.04  Aligned_cols=81  Identities=12%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751          136 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK  215 (322)
Q Consensus       136 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~  215 (322)
                      ..+|.++-+.|.+.|++|+..++.-.+.....    .++..++..++.|-..+-+-..+.+.+...+|..|.-....+..
T Consensus         3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~   78 (89)
T PF13747_consen    3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS   78 (89)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777777766654433    44445555666666666666666667777777666665555555


Q ss_pred             HHHHH
Q 020751          216 LCDRA  220 (322)
Q Consensus       216 LC~f~  220 (322)
                      ..+-+
T Consensus        79 a~e~I   83 (89)
T PF13747_consen   79 AIETI   83 (89)
T ss_pred             HHHHH
Confidence            54444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=89.01  E-value=5.3  Score=45.25  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751          129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI  208 (322)
Q Consensus       129 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~  208 (322)
                      -+..++.-+.+...=+...+++...+.|+-+..+-.+.+++||+.-.+.++.+..|++..+..+..++.++.+++..-+-
T Consensus       290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~  369 (1074)
T KOG0250|consen  290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK  369 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555566667777788888888888888999999999999999999999999999999999999988888


Q ss_pred             HhHHHHHHHHHHHhhccC
Q 020751          209 TTLGVKKLCDRARELENG  226 (322)
Q Consensus       209 Tn~GV~~LC~f~~~~~~~  226 (322)
                      .-.-+++||.-+..++..
T Consensus       370 ~k~~~d~l~k~I~~~~~~  387 (1074)
T KOG0250|consen  370 LKKEVDRLEKQIADLEKQ  387 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888999999888765543

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=88.25  E-value=16  Score=31.50  Aligned_cols=25  Identities=8%  Similarity=0.230  Sum_probs=9.2

Q ss_pred             hcchhhhhhHHHHHHHHHHHHHHHH
Q 020751          175 RGRSKLIGDEFQSVRDIVQTLESKL  199 (322)
Q Consensus       175 ~~dls~ig~Dv~~v~~~V~~Le~Ki  199 (322)
                      ...+..|...++.+...+..+...+
T Consensus       134 ~~~l~~i~~~~~~i~~~i~~i~~~~  158 (213)
T PF00015_consen  134 SESLEEIAESVEEISDSIEEISESA  158 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhHHhhhhHHHHhhH
Confidence            3333333333333333333333333

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.16  E-value=8.4  Score=35.81  Aligned_cols=76  Identities=9%  Similarity=0.170  Sum_probs=59.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751          125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI  200 (322)
Q Consensus       125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~  200 (322)
                      .....++..+--+.+...|+.|.++|+.+...++....-.+..++.|...+..+..+..+++++..+-..|..=|.
T Consensus        33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~  108 (251)
T PF11932_consen   33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME  108 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666677788889999999999999998888888888888888888888888888888866555555433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=87.75  E-value=5  Score=31.66  Aligned_cols=20  Identities=20%  Similarity=0.343  Sum_probs=9.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 020751          183 DEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       183 ~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      +.++.+-+.|..++..+..+
T Consensus        68 ~~v~~~~~~v~~~g~~v~~l   87 (90)
T PF06103_consen   68 EKVDPVFEAVADLGESVSEL   87 (90)
T ss_pred             HhHHHHHHHHHHHHHHHHHH
Confidence            33444444455555544443

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=86.92  E-value=13  Score=30.44  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh---HHHHHHHHHHHHHHHHHHhhhh
Q 020751          138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK  205 (322)
Q Consensus       138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~---Dv~~v~~~V~~Le~Ki~~iE~k  205 (322)
                      -|...-+..+.|...+++.......-.+..+....+++.-+.+|..   .|..+-.+|..||.=..++|.|
T Consensus        25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k   95 (99)
T PF10046_consen   25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK   95 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666666666666666655555555555444   6666666666666666666654

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=86.42  E-value=9.9  Score=37.10  Aligned_cols=100  Identities=12%  Similarity=0.164  Sum_probs=74.5

Q ss_pred             hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh-------------
Q 020751          117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-------------  183 (322)
Q Consensus       117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~-------------  183 (322)
                      .-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+..             
T Consensus        85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d  164 (333)
T PF05816_consen   85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD  164 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence            3344444568999999999999999999999999999988777777766666554444433333332             


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751          184 -----EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL  216 (322)
Q Consensus       184 -----Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L  216 (322)
                           .+..+.+.+..||.|+..++-.+.++..+.--+
T Consensus       165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi  202 (333)
T PF05816_consen  165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI  202 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                 345667788999999999998888888776543

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=86.29  E-value=13  Score=31.06  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHhHHHHHHHH
Q 020751          121 LSDACNSVARQLEDVYSSI  139 (322)
Q Consensus       121 MsnAv~svtKqLeqVs~sL  139 (322)
                      |.+.+..+..+++.+.+.|
T Consensus         3 l~~~~~~l~~~~~~l~~~l   21 (202)
T PF01442_consen    3 LDDRLDSLSSRTEELEERL   21 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.26  E-value=13  Score=32.59  Aligned_cols=6  Identities=17%  Similarity=0.396  Sum_probs=2.5

Q ss_pred             HHHHHH
Q 020751          215 KLCDRA  220 (322)
Q Consensus       215 ~LC~f~  220 (322)
                      +|++.+
T Consensus       176 ~l~~~~  181 (191)
T PF04156_consen  176 QLEEKI  181 (191)
T ss_pred             HHHHHH
Confidence            344433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=86.01  E-value=7.9  Score=42.10  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=23.3

Q ss_pred             HHHHHHhHHHHHHH-HHHHHHHHHHhHhhhhhhH
Q 020751          125 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV  157 (322)
Q Consensus       125 v~svtKqLeqVs~s-LaaaKrhLsqRId~vD~kl  157 (322)
                      ++++.+|+++|-.. ...++.|+...|++.+..+
T Consensus       189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l  222 (806)
T PF05478_consen  189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL  222 (806)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            45566777777776 7777777777777776544

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=85.85  E-value=16  Score=38.22  Aligned_cols=121  Identities=13%  Similarity=0.265  Sum_probs=74.8

Q ss_pred             hheeeEEeccCCcCchhhhhh--------------------hhHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 020751           98 VGYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD  154 (322)
Q Consensus        98 vGYgYmwWKGwsfSDlMfVTK--------------------RnMsnAv~svtKqLeqVs~sLa---aaKrhLsqRId~vD  154 (322)
                      -||-=|-=+|..|.++=.-.+                    +.....+..+.+++|++|+.|.   .||+...+.+..+.
T Consensus       237 ~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~  316 (569)
T PRK04778        237 AGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP  316 (569)
T ss_pred             HHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            355556677888887532222                    2334566677888888888876   46777777777777


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcc----------hhhhhhHHHHHHH---------------------HHHHHHHHHHHhh
Q 020751          155 RDVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVRD---------------------IVQTLESKLIEIE  203 (322)
Q Consensus       155 ~klDeq~eis~~i~~eV~~v~~d----------ls~ig~Dv~~v~~---------------------~V~~Le~Ki~~iE  203 (322)
                      +.++...+-...+..|+..++..          +..+..+++.+..                     ....|..++..++
T Consensus       317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie  396 (569)
T PRK04778        317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE  396 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776666665          3444444444333                     3344555555666


Q ss_pred             hhhhHHhHHHHHHHH
Q 020751          204 GKQDITTLGVKKLCD  218 (322)
Q Consensus       204 ~kQd~Tn~GV~~LC~  218 (322)
                      ..|.--..-|..|+.
T Consensus       397 ~eq~ei~e~l~~Lrk  411 (569)
T PRK04778        397 KEQEKLSEMLQGLRK  411 (569)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666655555555543

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=85.75  E-value=9.6  Score=39.88  Aligned_cols=51  Identities=6%  Similarity=0.090  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751          156 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ  206 (322)
Q Consensus       156 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ  206 (322)
                      +|.++++-.+++++++..+|.+++.+....+..++.++.||..+.+++..+
T Consensus        70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql  120 (475)
T PRK13729         70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV  120 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555544444333333344444444444444444443

>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

Probab=85.49  E-value=5.2  Score=42.67  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751          136 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR  175 (322)
Q Consensus       136 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~  175 (322)
                      ......+.+.+.+|+..++.++.+...-+.+++..+.++.
T Consensus       373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~  412 (656)
T PRK06975        373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS  412 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455566777777777777666666666665555443

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.44  E-value=13  Score=37.41  Aligned_cols=76  Identities=8%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      +.+.++++.+.+.+...+.... +++.+..++.+........++++.........+..++++++..+..++.++.++
T Consensus       309 ~~l~~~l~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l  384 (562)
T PHA02562        309 KELQHSLEKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL  384 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence            3344444444444442222221 233334444444444444444454444555555555555555555555555443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.29  E-value=5.9  Score=38.52  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751          133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  199 (322)
Q Consensus       133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki  199 (322)
                      |.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+.....++
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l  103 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL  103 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777888888999999999999988888899998888888888888887776655444433

>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx

Probab=84.95  E-value=16  Score=32.67  Aligned_cols=83  Identities=12%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751          120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  198 (322)
Q Consensus       120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K  198 (322)
                      .++..+..+-.||..+.+.|...-..+..|++.+-..+++. ..+++.++.|.+.+..++.+.-..|-++......|=..
T Consensus        35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a  114 (140)
T PF04513_consen   35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA  114 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35677888888888888888888888888888777777654 46677888888888888777777777766665555555


Q ss_pred             HHHh
Q 020751          199 LIEI  202 (322)
Q Consensus       199 i~~i  202 (322)
                      +.-+
T Consensus       115 ln~l  118 (140)
T PF04513_consen  115 LNNL  118 (140)
T ss_pred             HHHh
Confidence            5444

The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope

>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit

Probab=84.78  E-value=4  Score=37.93  Aligned_cols=57  Identities=16%  Similarity=0.309  Sum_probs=36.1

Q ss_pred             HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      +..|+-+|..|+|.+.|.-..+-+.+.+-++--...+.|+..+.+-+..||.|+|.|
T Consensus        77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~  133 (189)
T TIGR02132        77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI  133 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666665555555555444555566677777777777777777754

This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=83.87  E-value=4.3  Score=32.73  Aligned_cols=53  Identities=8%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751          123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG  176 (322)
Q Consensus       123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~  176 (322)
                      ++++.|..+.+.++..+...+..+ .+++.+..|||.+.+-...+.+.|++++.
T Consensus        11 ~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~   63 (75)
T PF05531_consen   11 QDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQD   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555554444433 34444555555555555555555544443

; GO: 0019028 viral capsid

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=83.86  E-value=57  Score=35.92  Aligned_cols=102  Identities=10%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751          122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE  201 (322)
Q Consensus       122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~  201 (322)
                      .+-+..+-..+....+.-...|..+..+++.+..++.......+.-++.+       ..+..|+..+..++..-.++|..
T Consensus       372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns  444 (717)
T PF09730_consen  372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS  444 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence            34444444445555556666677777777777777777665555555544       44455567777777776677766


Q ss_pred             hhhhhhHHhHHHHHHHHHHHhhccCCCccc
Q 020751          202 IEGKQDITTLGVKKLCDRARELENGRPTEL  231 (322)
Q Consensus       202 iE~kQd~Tn~GV~~LC~f~~~~~~~~~~~~  231 (322)
                      -..-=..--..+.-|+.++ ++-|+-.|+.
T Consensus       445 AQDELvtfSEeLAqLYHHV-C~cNgeTPnR  473 (717)
T PF09730_consen  445 AQDELVTFSEELAQLYHHV-CMCNGETPNR  473 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHccCCCCcc
Confidence            6555444555666666666 5555555554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins

Probab=83.41  E-value=11  Score=30.36  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHhHhhhhhhHHHHHHHHH----HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751          139 ISAAQRQLSSKITSVDRDVNKIVEISQ----ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE  201 (322)
Q Consensus       139 LaaaKrhLsqRId~vD~klDeq~eis~----~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~  201 (322)
                      +-++.+++.+|++.=-..|.++.+.++    .++.+...=...+..+..|++.++.-++.|..|+..
T Consensus        16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~   82 (88)
T PF10241_consen   16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK   82 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777777777777666654    345555556667778889999999999999888864

There is a characteristic KxDL motif towards the C terminus. The function is unknown.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=83.31  E-value=2.6  Score=34.97  Aligned_cols=55  Identities=22%  Similarity=0.344  Sum_probs=46.0

Q ss_pred             HHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020751           94 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI  173 (322)
Q Consensus        94 ~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~  173 (322)
                      ++.-+|.||+=.+-                               +..|+++|..||+.++..+++..+..+..+++++.
T Consensus        70 v~v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~  118 (126)
T TIGR00293        70 VLVSIGSGYYVEKD-------------------------------AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ  118 (126)
T ss_pred             EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678999987764                               47889999999999999999999999999999888


Q ss_pred             hhcchh
Q 020751          174 LRGRSK  179 (322)
Q Consensus       174 v~~dls  179 (322)
                      +...+.
T Consensus       119 i~~~l~  124 (126)
T TIGR00293       119 LEQEAQ  124 (126)
T ss_pred             HHHHHh
Confidence            766543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=83.30  E-value=12  Score=38.66  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 020751          130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT  209 (322)
Q Consensus       130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~T  209 (322)
                      ++|+|....|++..    ++|...+++..+...-.+..+.++..+..-+.++..|++.+++.+..++..|..++..+ ..
T Consensus        38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~  112 (420)
T COG4942          38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE  112 (420)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence            88888888877654    45566677777777777888888888888888999999999999999999998888766 66


Q ss_pred             hHHHHHH
Q 020751          210 TLGVKKL  216 (322)
Q Consensus       210 n~GV~~L  216 (322)
                      ..++...
T Consensus       113 qr~~La~  119 (420)
T COG4942         113 QRRRLAE  119 (420)
T ss_pred             HHHHHHH
Confidence            6665544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.27  E-value=14  Score=34.36  Aligned_cols=70  Identities=10%  Similarity=0.247  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751          120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  189 (322)
Q Consensus       120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~  189 (322)
                      .|.+-++.+..+|++.......-+.++.++++..+....+.++--++.++++..++.++....-+.+.++
T Consensus        97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666666666666666666666666666666666666666666666555555444433333333

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=83.02  E-value=33  Score=34.80  Aligned_cols=61  Identities=15%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751          133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ  193 (322)
Q Consensus       133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~  193 (322)
                      .+.++.+...=.+++.-.+.+....+++.+..+++...+.++...+.++-...+.+...+.
T Consensus       269 ~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~~~~  329 (553)
T PRK15048        269 REGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQ  329 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555666666666666666666666665555555555555554444444433

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=82.92  E-value=5.1  Score=40.07  Aligned_cols=41  Identities=22%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 020751          185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN  225 (322)
Q Consensus       185 v~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~  225 (322)
                      ++.++..+..|-.||.+|..+=..|-.=|..+|.=++.+++
T Consensus        59 l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~   99 (383)
T PF04100_consen   59 LEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDN   99 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444433

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=82.49  E-value=15  Score=36.79  Aligned_cols=78  Identities=13%  Similarity=0.294  Sum_probs=37.4

Q ss_pred             chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh-------hhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751          112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLIGDE  184 (322)
Q Consensus       112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~v-------D~klDeq~eis~~i~~eV~~v~~dls~ig~D  184 (322)
                      ..+-.||.-|..--+.+++.||.+    .+=.|||.++++.+       -++|.+..+--++...-|++....|.+|.++
T Consensus       234 ~~~~~~~~~L~kl~~~i~~~lekI----~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee  309 (359)
T PF10498_consen  234 SALPETKSQLDKLQQDISKTLEKI----ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE  309 (359)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344445555554444444444333    22344444444433       3334444444444444566666666666666


Q ss_pred             HHHHHHHHH
Q 020751          185 FQSVRDIVQ  193 (322)
Q Consensus       185 v~~v~~~V~  193 (322)
                      ++.+++-+.
T Consensus       310 Le~vK~eme  318 (359)
T PF10498_consen  310 LEQVKQEME  318 (359)
T ss_pred             HHHHHHHHH
Confidence            666664433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=82.43  E-value=8.9  Score=30.47  Aligned_cols=78  Identities=15%  Similarity=0.317  Sum_probs=39.2

Q ss_pred             hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751          114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ  193 (322)
Q Consensus       114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~  193 (322)
                      |+-+++-+.+...-++..+......-...++.+..++++.=.+||=.      +++|....+       .-+...+.-+.
T Consensus         1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~-------~~L~~~r~kl~   67 (79)
T PF04380_consen    1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQK-------AVLARTREKLE   67 (79)
T ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHH-------HHHHHHHHHHH
Confidence            44444555555555555555554455555555555555554444422      122222222       22444555556


Q ss_pred             HHHHHHHHhhh
Q 020751          194 TLESKLIEIEG  204 (322)
Q Consensus       194 ~Le~Ki~~iE~  204 (322)
                      .||.||..+|.
T Consensus        68 ~LEarl~~LE~   78 (79)
T PF04380_consen   68 ALEARLAALEA   78 (79)
T ss_pred             HHHHHHHHHhc
Confidence            66666666664

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.42  E-value=21  Score=33.14  Aligned_cols=69  Identities=13%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751          147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK  215 (322)
Q Consensus       147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~  215 (322)
                      -.||+.|..++.+...+.........++...+..+-.|++....-+..+|.|+..++..-.....-+.-
T Consensus        91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~  159 (237)
T PF00261_consen   91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS  159 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence            456666667777777777777777788888888888888888888888888888887655444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)

Probab=82.33  E-value=33  Score=29.98  Aligned_cols=51  Identities=20%  Similarity=0.242  Sum_probs=19.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751          153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE  203 (322)
Q Consensus       153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE  203 (322)
                      +-..+++..+....+.+.+..+...+.+....++.....+..+..++..+.
T Consensus        37 i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~   87 (262)
T smart00283       37 VAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELE   87 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333334444333

Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=82.30  E-value=24  Score=36.82  Aligned_cols=18  Identities=11%  Similarity=0.313  Sum_probs=13.4

Q ss_pred             hHHHHHHHHHHHHHHhcC
Q 020751           53 FNDLLAEVSSVQQELSHV   70 (322)
Q Consensus        53 ~~dL~aQV~~LaqElr~L   70 (322)
                      |.++..+|..|+++|.+.
T Consensus       251 ~~~i~~~i~~l~~~i~~~  268 (569)
T PRK04778        251 HLDIEKEIQDLKEQIDEN  268 (569)
T ss_pred             CCChHHHHHHHHHHHHHH
Confidence            334888888888888873

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=82.08  E-value=9.4  Score=31.75  Aligned_cols=65  Identities=11%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh--hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751          147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD  218 (322)
Q Consensus       147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i--g~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~  218 (322)
                      ..+++.+++++++       ..+-++.+..++.+.  .+|+..++-.+..++++++.+++.=+--++-+.+|.+
T Consensus        34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE  100 (106)
T PF10805_consen   34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE  100 (106)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666654       456677777777777  8888888888888999999998887777777777754

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>smart00806 AIP3 Actin interacting protein 3

Probab=81.44  E-value=27  Score=36.25  Aligned_cols=94  Identities=17%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH-----hhcchhhh
Q 020751          119 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI  181 (322)
Q Consensus       119 RnMsnAv~svtKqLeqVs~s------------LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~-----v~~dls~i  181 (322)
                      +.+..-++++-.++.+|.++            +.+.|++|+..-|+|=.|.|+.+.+.+.+|++|..     ....++.+
T Consensus       176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v  255 (426)
T smart00806      176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV  255 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            34555566666666777654            55679999999999999999999999999999743     22345566


Q ss_pred             hhHHHHHHHHHH---------------HHHHHHHHhhhhhhHHhHH
Q 020751          182 GDEFQSVRDIVQ---------------TLESKLIEIEGKQDITTLG  212 (322)
Q Consensus       182 g~Dv~~v~~~V~---------------~Le~Ki~~iE~kQd~Tn~G  212 (322)
                      ..|++....-+.               .||.-|+.|..-|+|=|.=
T Consensus       256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQ  301 (426)
T smart00806      256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQ  301 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655554444               4667778888888876653

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=81.27  E-value=7.1  Score=35.49  Aligned_cols=63  Identities=19%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751          140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG  204 (322)
Q Consensus       140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~  204 (322)
                      ..-..-|..+.+.|+.++++..+.-+...|+|--.  .|=+=+.+|+.+...+..||.+|..+|.
T Consensus        84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~  146 (175)
T PRK13182         84 SVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP  146 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455677777777788888888888888888443  4467788999999999999999999764

>PRK09039 hypothetical protein; Validated

Probab=81.17  E-value=20  Score=35.48  Aligned_cols=87  Identities=9%  Similarity=0.234  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH-------HHHHHHHHHHhhh
Q 020751          132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-------VQTLESKLIEIEG  204 (322)
Q Consensus       132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~-------V~~Le~Ki~~iE~  204 (322)
                      |+..++....+..++..|+..+.++|++.+..+....-+|..++..++.+..-+..++..       -.....||+.++.
T Consensus       100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~  179 (343)
T PRK09039        100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR  179 (343)
T ss_pred             HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444445577888888888888888887766666555555555444444444444       4444455555554


Q ss_pred             hhhHHhHH-HHHHHH
Q 020751          205 KQDITTLG-VKKLCD  218 (322)
Q Consensus       205 kQd~Tn~G-V~~LC~  218 (322)
                      .=+.+.+. +..|-+
T Consensus       180 ~L~~a~~~~~~~l~~  194 (343)
T PRK09039        180 RLNVALAQRVQELNR  194 (343)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            44444333 444443

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=80.62  E-value=51  Score=31.02  Aligned_cols=38  Identities=34%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHHHHHh
Q 020751          185 FQSVRDIVQTLESKLIEIEGKQDI---TTLGVKKLCDRARE  222 (322)
Q Consensus       185 v~~v~~~V~~Le~Ki~~iE~kQd~---Tn~GV~~LC~f~~~  222 (322)
                      ...+++=|..-..||.++|.+|+-   .|.=+.-||-+..+
T Consensus       103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe  143 (195)
T PF10226_consen  103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE  143 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            455666788888899999998864   57788899998855

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=80.01  E-value=7.8  Score=31.25  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=11.3

Q ss_pred             HHHHHHHHHhHhhhhhhHHHHHHH
Q 020751          140 SAAQRQLSSKITSVDRDVNKIVEI  163 (322)
Q Consensus       140 aaaKrhLsqRId~vD~klDeq~ei  163 (322)
                      ..++++|..-|+.+.+.|++..+.
T Consensus        38 ~~~~~eL~~~l~~ie~~L~DL~~a   61 (97)
T PF09177_consen   38 KWLKRELRNALQSIEWDLEDLEEA   61 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555544444433

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 40/264 (15%), Positives = 81/264 (30%), Gaps = 65/264 (24%)

Query: 4   F-FSC-VSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVS 61
           F  SC +  +LT+      R   V+D +         L         D      LL +  
Sbjct: 262 FNLSCKI--LLTT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYL 311

Query: 62  SVQ-QELSHVPRSVIIETSSGSGTGAKKYGVIVVIVA-VGYGYVWWKGWKLPDMMFATRR 119
             + Q+L   PR    E  + +         + +I   +  G   W  WK  +       
Sbjct: 312 DCRPQDL---PR----EVLTTNPR------RLSIIAESIRDGLATWDNWKHVN------- 351

Query: 120 SLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 178
                C+ +   +E   + +  A  R++  +++      +    I       ++++    
Sbjct: 352 -----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTIL---LSLIWF-- 397

Query: 179 KLIGDEFQSVRDIVQTLESK-LIEIEGKQDITT-----LGVKKLCDRARELENGRPTELV 232
                    V  +V  L    L+E + K+   +     L +K   +    L       +V
Sbjct: 398 ---DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----SIV 450

Query: 233 QASRYTLSRTTLELPGITPSSRSG 256
               Y + + T +   + P     
Sbjct: 451 D--HYNIPK-TFDSDDLIPPYLDQ 471

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
2ba2_A	85	D12_ORF131, hypothetical UPF0134 protein MPN010; D	94.17
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	93.21
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	88.81
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	88.67
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	88.03
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.84
3g67_A	213	Methyl-accepting chemotaxis protein; four-helix bu	87.81
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	87.41
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	86.38
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	86.35
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	85.37
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.28
2qyw_A	102	Vesicle transport through interaction with T-SNAR	85.04
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.97
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	84.68
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	84.22
1vcs_A	102	Vesicle transport through interaction with T- snar	83.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.11
2yo3_A	268	General control protein GCN4, putative inner MEMB	82.0
2akf_A	32	Coronin-1A; coiled coil, protein binding; 1.20A {S	81.9
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	81.77
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	81.63
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	80.37
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	80.3

>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1

Probab=94.17  E-value=0.11  Score=41.62  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751          115 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT  194 (322)
Q Consensus       115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~  194 (322)
                      |||+|-+..-..+.            ++|..|.+|...+...+.-|-|.+..=-+++.+++..-..-|.-++.|-....+
T Consensus         8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~   75 (85)
T 2ba2_A            8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG   75 (85)
T ss_dssp             BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998887643221            345555555555555555555555544555555555555666777788888888


Q ss_pred             HHHHHHHhh
Q 020751          195 LESKLIEIE  203 (322)
Q Consensus       195 Le~Ki~~iE  203 (322)
                      +..+|+.||
T Consensus        76 ~nkRLDkle   84 (85)
T 2ba2_A           76 INKRLDNLE   84 (85)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHhhccC
Confidence            888888887

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=93.21  E-value=1.1  Score=36.69  Aligned_cols=79  Identities=10%  Similarity=0.281  Sum_probs=63.4

Q ss_pred             HHHHHhH---HHHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751          126 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK  198 (322)
Q Consensus       126 ~svtKqL---eqVs~sLaaaKrhLsqRId~vD----~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K  198 (322)
                      +.++|||   .|..+.+..+|+.|..+|+.+.    .|++++.+....++.++..-..+|..+..+++.+..-=..|..+
T Consensus        11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~   90 (107)
T 2no2_A           11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE   90 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666   4677889999999999999865    67788888888888898888888888888888888777777777


Q ss_pred             HHHhhh
Q 020751          199 LIEIEG  204 (322)
Q Consensus       199 i~~iE~  204 (322)
                      ++.++.
T Consensus        91 ~~~l~~   96 (107)
T 2no2_A           91 FAELEK   96 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=88.81  E-value=2.9  Score=41.85  Aligned_cols=97  Identities=10%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh-----hh
Q 020751          110 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI  181 (322)
Q Consensus       110 fSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-----~i  181 (322)
                      +.|+|=-..++....+..|-..|++++..-..++   ++|+..+...+.++.++.+..+.-.+++.+.+.-++     ++
T Consensus        87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~  166 (464)
T 1m1j_B           87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI  166 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3788888889999999999999999987766655   345666666666555555555554444444443332     23


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751          182 GDEFQSVRDIVQTLESKLIEIEGKQ  206 (322)
Q Consensus       182 g~Dv~~v~~~V~~Le~Ki~~iE~kQ  206 (322)
                      ...+..++..+..|..||..+|.+-
T Consensus       167 ~~~i~~L~~~~~~l~~ki~~l~~~~  191 (464)
T 1m1j_B          167 PSSLRVLRAVIDSLHKKIQKLENAI  191 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666667766666553

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=88.67  E-value=5.1  Score=38.06  Aligned_cols=77  Identities=14%  Similarity=0.150  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751          120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES  197 (322)
Q Consensus       120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~  197 (322)
                      -|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..|+......++.++++++.++.++.-.-..-++.|-+|-.
T Consensus       356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (471)
T 3mq9_A          356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA  432 (471)
T ss_dssp             HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence            344455444433335677888888888888877644 44778888899999999999998888888777777766543

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=88.03  E-value=7.6  Score=34.72  Aligned_cols=39  Identities=15%  Similarity=0.277  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751          121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK  159 (322)
Q Consensus       121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe  159 (322)
                      ++.|+..+...+..+.+.++.+-+++..-++.+....++
T Consensus         5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~   43 (213)
T 3g67_A            5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN   43 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555544444444444444444333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.84  E-value=2.7  Score=40.14  Aligned_cols=66  Identities=9%  Similarity=-0.056  Sum_probs=53.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751          153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD  218 (322)
Q Consensus       153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~  218 (322)
                      +....+++.++.++.+.|-..++.+.+.++.+++.+++--..++..+.+++..=.-+++-...+|.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (487)
T 3oja_A          412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV  477 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence            445666677788888888888889999999999999888888888888888777777777777775

>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C

Probab=87.81  E-value=5  Score=35.94  Aligned_cols=62  Identities=11%  Similarity=0.126  Sum_probs=27.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751          128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  189 (322)
Q Consensus       128 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~  189 (322)
                      +...+++++..+...-.++....+.+....+++.+..+.+.+++......+..+...+..+-
T Consensus         5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (213)
T 3g67_A            5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEAS   66 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.38  E-value=1.5  Score=36.00  Aligned_cols=64  Identities=9%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             HHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          136 YSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       136 s~sLaaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      .+.+..+|.+   |..+|+++...++.+...-....+.+.++..   +...+++.++..+..||.-|..+
T Consensus        28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~   94 (129)
T 3tnu_B           28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKA   94 (129)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence            3444444432   3345666666666666555555555555443   23345555565566666555544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=86.35  E-value=6  Score=40.61  Aligned_cols=94  Identities=9%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-------HHHHHHHHHHHHhhcchhhhhhH
Q 020751          112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-------EISQATQEEVTILRGRSKLIGDE  184 (322)
Q Consensus       112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-------eis~~i~~eV~~v~~dls~ig~D  184 (322)
                      ++|-=+-|++.+-++.|-.+|++++.+=..+-....+-.+.+..++.+..       |++.+++..+..++..|.+--.-
T Consensus        53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsn  132 (562)
T 3ghg_A           53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQH  132 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999987766666666666666655555544       34444444444555555444455


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 020751          185 FQSVRDIVQTLESKLIEIEGK  205 (322)
Q Consensus       185 v~~v~~~V~~Le~Ki~~iE~k  205 (322)
                      +..||..|+.+-.||.++|--
T Consensus       133 IrvLQsnLedq~~kIQRLEvD  153 (562)
T 3ghg_A          133 IQLLQKNVRAQLVDMKRLEVD  153 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            556677777777788888743

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=85.37  E-value=6.2  Score=29.38  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751          120 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  189 (322)
Q Consensus       120 nMsnAv~svtKqLeqVs~-sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~  189 (322)
                      .|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-....+.|+++++..+....-|+++++
T Consensus         6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A            6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            466777777777665433 3445666677778777777777777777777777777776666666666553

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.28  E-value=4.5  Score=36.37  Aligned_cols=56  Identities=4%  Similarity=0.092  Sum_probs=26.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhh--cchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751          152 SVDRDVNKIVEISQATQEEVTILR--GRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD  207 (322)
Q Consensus       152 ~vD~klDeq~eis~~i~~eV~~v~--~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd  207 (322)
                      ++...+++..+-.+..++....++  .++..+..+++....-...||.+|.++...-+
T Consensus        64 ~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie  121 (256)
T 3na7_A           64 KNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK  121 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444433332  23444555555555555566655555544433

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=85.04  E-value=1.9  Score=34.52  Aligned_cols=60  Identities=8%  Similarity=0.090  Sum_probs=41.6

Q ss_pred             hhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751          113 MMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR  175 (322)
Q Consensus       113 lMfVTKRnMsnAv~svtKqLeqVs~sLa-aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~  175 (322)
                      ++----+.+...++++.+.++++..... ..|+.   .|..++..|||..|+.+++.-||..+-
T Consensus        16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~p   76 (102)
T 2qyw_A           16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYAP   76 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333345566777888888887644323 44443   477888899999999999999987763

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.97  E-value=1.6  Score=36.13  Aligned_cols=69  Identities=6%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          131 QLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       131 qLeqVs~sLaaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      +...-.+.+..+|.+   |..+|++|...++.+...-....+.+.++..   +...+++.++..+..||.-|..+
T Consensus        25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~   96 (131)
T 3tnu_A           25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL   96 (131)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334555555543   4456777777777666666666666655554   33445666666666666666544

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=84.68  E-value=2.9  Score=33.08  Aligned_cols=53  Identities=9%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751          119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL  174 (322)
Q Consensus       119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v  174 (322)
                      ..+...++++...|+++...=...|+.   -|..++..+|+..|+..+|.-||..+
T Consensus         8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~   60 (97)
T 3onj_A            8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            345677888888888876333334443   47778889999999999999999888

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=84.22  E-value=14  Score=31.94  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhcchhhhhhHHHHHHHHHH--------HHHH
Q 020751          138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES  197 (322)
Q Consensus       138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~------------~v~~dls~ig~Dv~~v~~~V~--------~Le~  197 (322)
                      -+.+-|++|..+.|+|=.++|+.+.+.+.++++|.            .+..|+.....|++.+...+.        .+|.
T Consensus        11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~   90 (141)
T 3okq_A           11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA   90 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence            46678889999999999999999999999988874            344555555555555555543        4677


Q ss_pred             HHHHhhhhhhHHhHHHH
Q 020751          198 KLIEIEGKQDITTLGVK  214 (322)
Q Consensus       198 Ki~~iE~kQd~Tn~GV~  214 (322)
                      -|..|..-|+|=|.==.
T Consensus        91 EL~~VceEQqfl~~Qed  107 (141)
T 3okq_A           91 ELDKVCEEQQFLTLQEE  107 (141)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777877665433

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=83.77  E-value=1.4  Score=35.26  Aligned_cols=62  Identities=10%  Similarity=0.124  Sum_probs=45.5

Q ss_pred             CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751          111 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR  175 (322)
Q Consensus       111 SDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~  175 (322)
                      |+++----+.+...++.+.+.+.++...=...|+.   -|..++..|||..|+..+|.-||..+-
T Consensus         4 SelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p   65 (102)
T 1vcs_A            4 GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIP   65 (102)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34444445667788899999998876432334443   377888999999999999999997764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.11  E-value=10  Score=36.77  Aligned_cols=37  Identities=3%  Similarity=0.083  Sum_probs=29.9

Q ss_pred             hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020751          118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD  154 (322)
Q Consensus       118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD  154 (322)
                      ...+.+.+..+...+++....++..++++..|++...
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~  494 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR  494 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence            3446678888888888888899999999888877766

>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}

Probab=82.00  E-value=2.5  Score=39.80  Aligned_cols=58  Identities=9%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751          132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR  189 (322)
Q Consensus       132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~  189 (322)
                      ..|++++++.++....+|+..|+.+++....=..++.+.|.++-..+-.|..+++.|+
T Consensus       200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~  257 (268)
T 2yo3_A          200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK  257 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677778999999888888888777777666666666666655555555555555444

>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}

Probab=81.90  E-value=1.4  Score=29.22  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=25.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751          178 SKLIGDEFQSVRDIVQTLESKLIEIEGKQ  206 (322)
Q Consensus       178 ls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ  206 (322)
                      ++++.+|+.+++.+|+.|..+++++|..-
T Consensus         1 isrlee~~r~l~~ivq~lq~r~drle~tv   29 (32)
T 2akf_A            1 VSRLEEDVRNLNAIVQKLQERLDRLEETV   29 (32)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999764

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=81.77  E-value=20  Score=29.42  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=13.2

Q ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751          169 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI  202 (322)
Q Consensus       169 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i  202 (322)
                      .++..+...+..+..++..+..-+..++..+..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (284)
T 1c1g_A           69 EKLELAEKKATDAEADVASLNRRIQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444443333333333333

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=81.63  E-value=3.5  Score=34.54  Aligned_cols=59  Identities=19%  Similarity=0.279  Sum_probs=33.0

Q ss_pred             hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHHHHHhhcc
Q 020751          117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGR  177 (322)
Q Consensus       117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~-klDeq~eis~~i~~eV~~v~~d  177 (322)
                      |++-|.++|.++..+|+.+.+++..+.++=. |- +++. .+..=+.....++++|..++..
T Consensus        68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~-kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~  127 (130)
T 4dnd_A           68 TTNELRNGLRSIEWDLEDLEETIGIVEANPG-KF-KLPAGDLQERKVFVERMREAVQEMKDH  127 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777777777777777777776665422 22 2222 2444445555555555554443

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=80.37  E-value=16  Score=27.24  Aligned_cols=69  Identities=12%  Similarity=0.173  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhHHH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751          132 LEDVYSSISAAQRQLSSKITSVDRDVNK------------IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL  199 (322)
Q Consensus       132 LeqVs~sLaaaKrhLsqRId~vD~klDe------------q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki  199 (322)
                      |+++...+..+...+.+.+.+|...++.            ..+.....+..+..+..-|..|...+...-..++.-|.++
T Consensus        13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~   92 (98)
T 3gwk_C           13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI   92 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444443            3444555666666666666666666666666666666655


Q ss_pred             H
Q 020751          200 I  200 (322)
Q Consensus       200 ~  200 (322)
                      .
T Consensus        93 A   93 (98)
T 3gwk_C           93 A   93 (98)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=80.30  E-value=37  Score=31.43  Aligned_cols=15  Identities=20%  Similarity=0.251  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHhhcc
Q 020751          211 LGVKKLCDRARELEN  225 (322)
Q Consensus       211 ~GV~~LC~f~~~~~~  225 (322)
                      .....|-+.+..++.
T Consensus       283 ~~~~~l~~~a~~L~~  297 (341)
T 3zx6_A          283 AAAAALEEQASRLTE  297 (341)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344455555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	87.67

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.67  E-value=0.44  Score=36.36  Aligned_cols=61  Identities=18%  Similarity=0.216  Sum_probs=43.7

Q ss_pred             hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcch
Q 020751          117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS  178 (322)
Q Consensus       117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl  178 (322)
                      +++-|.++|.++-.+|+.+.+++..+.++ -.|-.-=+..++.-....+.++++|..++..+
T Consensus        43 ~~~eL~~~l~siewdL~dLe~av~~ve~n-p~kf~l~~~ei~~Rr~fi~~~~~~I~~~~~~l  103 (106)
T d1lvfa_          43 TTNELRNNLRSIEWDLEDLDETISIVEAN-PRKFNLDATELSIRKAFITSTRQIVRDMKDQM  103 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-GGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhC-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999988776 23332113346666666777777776666654