Citrus Sinensis ID: 020776
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 321 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VYP0 | 334 | Protein SCO1 homolog 1, m | yes | no | 0.996 | 0.958 | 0.573 | 1e-110 | |
| O75880 | 301 | Protein SCO1 homolog, mit | yes | no | 0.688 | 0.734 | 0.421 | 4e-53 | |
| A1A4J8 | 305 | Protein SCO1 homolog, mit | yes | no | 0.682 | 0.718 | 0.415 | 7e-50 | |
| Q5SUC9 | 284 | Protein SCO1 homolog, mit | yes | no | 0.672 | 0.760 | 0.424 | 1e-49 | |
| O42899 | 263 | Protein sco1 OS=Schizosac | yes | no | 0.616 | 0.752 | 0.436 | 2e-46 | |
| Q8VCL2 | 255 | Protein SCO2 homolog, mit | no | no | 0.663 | 0.835 | 0.414 | 2e-45 | |
| A6H784 | 266 | Protein SCO2 homolog, mit | no | no | 0.676 | 0.815 | 0.405 | 1e-44 | |
| Q5RH02 | 279 | Protein SCO2 homolog, mit | yes | no | 0.613 | 0.706 | 0.426 | 2e-44 | |
| P23833 | 295 | Protein SCO1, mitochondri | yes | no | 0.738 | 0.803 | 0.384 | 2e-43 | |
| O43819 | 266 | Protein SCO2 homolog, mit | no | no | 0.542 | 0.654 | 0.429 | 3e-42 |
| >sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/335 (57%), Positives = 248/335 (74%), Gaps = 15/335 (4%)
Query: 1 MATAIVRSAKNFRN--LHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIG 58
MA+A+ R+A R+ L +R + L P P+ I+D ++H L + G
Sbjct: 1 MASALCRTASRLRSVQLFRRIRVSSDLLSASSPSPA-CISDALRHGDFSLPRSFFSLNCG 59
Query: 59 FQSFVADQR-FSSTSTTTGTVQSGHSKPNSEGGDKS-----------GDSNQSKSDTGKP 106
+ DQR STS + T + KP ++ +K+ G ++++ +GK
Sbjct: 60 IEMLKMDQRCLLSTSASDTTSKHDSGKPETKSSEKNEKSGGSESSDGGSDHKNERASGKD 119
Query: 107 IRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKL 166
+RGGP+SW+SF LL TGAG+++YYD +K++HIE+IN S AVK+GPS GKAAIGGPF L
Sbjct: 120 VRGGPVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSL 179
Query: 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226
I DGK VTEK+ +GKWT++YFGFTHCPDICPDEL KLAAA+DKIKENSG+D+VP FISV
Sbjct: 180 IRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISV 239
Query: 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVM 286
DPERDTV+QV EYVKEFHPKLIGLTGSP+EI+++AR+YRVYYMKT EEDSDYLVDHSIVM
Sbjct: 240 DPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVM 299
Query: 287 YLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
YLMSP+M FVKF+GKN+DV+SL DG++KEI+QY++
Sbjct: 300 YLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQYRK 334
|
Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX. Plays an essential role in embryo development. Arabidopsis thaliana (taxid: 3702) |
| >sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 146/228 (64%), Gaps = 7/228 (3%)
Query: 96 SNQSKSDTGKPIRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSV 155
S + D+ +P + GP+SW S + G ++ +H+++ + ++ +
Sbjct: 77 SQKGPGDSTRPSKPGPVSWKSLAITFAIGGALL-----AGMKHVKKEKAEKLEKERQRHI 131
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
GK +GGPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K+ VD+I +
Sbjct: 132 GKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT 191
Query: 216 GI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAE 273
+ D+ P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY +
Sbjct: 192 TLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKD 251
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ Y++
Sbjct: 252 EDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRK 299
|
Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX. Homo sapiens (taxid: 9606) |
| >sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 143/226 (63%), Gaps = 7/226 (3%)
Query: 98 QSKSDTGKPIRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGK 157
+ D +P + GP+SW S + G ++ ++ ++ + ++ S+GK
Sbjct: 83 KGSGDPMRPSKPGPVSWKSLAVTFAIGGALL-----AGMKYFKKEKTEKLEKERHRSIGK 137
Query: 158 AAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI 217
+GGPF L H G+ T+KD+LG+W +IYFGFTHCPDICP+EL+K+ VD+I +
Sbjct: 138 PLLGGPFSLTTHTGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTL 197
Query: 218 -DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAEED 275
++ P FI++DPERDT E + YVKEF PKLIGLTG+ +EI +ARA+RVYY +ED
Sbjct: 198 PNLTPLFITIDPERDTKEAIANYVKEFSPKLIGLTGTKEEIDQVARAFRVYYSPGPKDED 257
Query: 276 SDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ +++
Sbjct: 258 EDYIVDHTIIMYLIGPDGEFLDYFGQNKKNAEIAGSIAAHMRTHRK 303
|
Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX. Bos taurus (taxid: 9913) |
| >sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 142/226 (62%), Gaps = 10/226 (4%)
Query: 98 QSKSDTGKPIRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGK 157
Q+ S KP GP+SW S L G ++ ++ ++ ++ S+GK
Sbjct: 65 QAGSHRPKP---GPVSWKSLALTFAIGGSLL-----AGMKYFKKEKIEKLEKQRHRSIGK 116
Query: 158 AAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI 217
+GGPF L H+G+ T+KD+LG+W +IYFGFTHCPDICP+EL+K+ V++I +
Sbjct: 117 PLLGGPFSLTTHNGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSL 176
Query: 218 -DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAEED 275
++ P FI++DPERDT E + YVKEF PKL+GLTG+ +EI +ARAYRVYY +ED
Sbjct: 177 PNLTPLFITIDPERDTKEAIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDED 236
Query: 276 SDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ + +
Sbjct: 237 EDYIVDHTIIMYLIGPDGEFLDYFGQNKKKAEIAGSIAAHMRSHMK 282
|
Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX. Mus musculus (taxid: 10090) |
| >sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 133/206 (64%), Gaps = 8/206 (3%)
Query: 110 GPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINH 169
G IS + LL A T G+ Y+ EK++ +E N A ++G+ +GG F LI+H
Sbjct: 52 GMISIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLA-----TIGRPQLGGAFSLIDH 106
Query: 170 DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229
G VT+ DF GK+++IYFGFT CPDICPDEL K++AA+D + G + P FI+ DP
Sbjct: 107 HGNRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGDVVYPIFITCDPA 166
Query: 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED---SDYLVDHSIVM 286
RD +++ EY+++F+PK++GLTGS +EI++I + +RVY+ D DYLVDHS+
Sbjct: 167 RDPPQEMAEYLEDFNPKIVGLTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLVDHSVFF 226
Query: 287 YLMSPKMEFVKFFGKNNDVNSLADGI 312
YLM P+ +F++ FG+N+ LA I
Sbjct: 227 YLMDPEGKFIEVFGRNSTSEDLARAI 252
|
Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 141/227 (62%), Gaps = 14/227 (6%)
Query: 99 SKSDTGKPIRGGPISWLSFLLLALTGAGIIWYY---DKEKEQHIEEINSASQAVKQGPSV 155
S+ G+ R GP L+ AL GAG+ W + EKEQ ++ ++A++Q
Sbjct: 32 SRHWAGQGQRQGPGLRTRLLITALFGAGLGWAWLAARAEKEQWRQQ--QRTEALRQ---- 85
Query: 156 GKAAIG-GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214
AA+G G F L++H G+ + DF G+W ++YFGFTHCPDICPDEL+KL V K++
Sbjct: 86 --AAVGQGDFSLLDHKGQPRCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRKLEAE 143
Query: 215 SGIDIV-PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TA 272
+ +V P FI+VDPERD V + YV+EFHP+L+GLTGS +++ + +R YRVYY
Sbjct: 144 PDLPLVQPVFITVDPERDDVAAMARYVQEFHPRLLGLTGSTEQVAHASRNYRVYYSAGPK 203
Query: 273 EEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
+ED DY+VDHSI +YL++P F ++G++ + + I + I +
Sbjct: 204 DEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQIVESIRRHIAAF 250
|
Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). Mus musculus (taxid: 10090) |
| >sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 144/232 (62%), Gaps = 15/232 (6%)
Query: 96 SNQSKSDTGKPIR-GGPISWLSFLLLALTGAGI--IWYYDK-EKEQHIEEINSASQAVKQ 151
S +DTG+ + GP L+ AL GAG+ W + EKE+ ++ ++A++Q
Sbjct: 39 STPGPADTGRQGQPQGPGLRTRLLVTALVGAGLGGAWLALRAEKERGRQQ--QRTEALRQ 96
Query: 152 GPSVGKAAIG-GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK 210
AA+G G F L++H G+ + DF G+W ++YFGFTHCPDICPDEL+KL V +
Sbjct: 97 ------AAVGQGDFSLLDHRGRVRCKADFRGQWVLLYFGFTHCPDICPDELEKLVQVVRQ 150
Query: 211 IKENSGIDIV-PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY- 268
++ G+ V P FI+VDPERDTV + YV++FHP+L+GLTGS ++I ++R+YRVYY
Sbjct: 151 LEAEPGLPPVQPLFITVDPERDTVAAMARYVQDFHPRLLGLTGSAEQIAQVSRSYRVYYS 210
Query: 269 MKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
+ED DY+VDHSI +YL+SP F ++ + + D + + + ++
Sbjct: 211 AGPKDEDQDYIVDHSIAIYLLSPDGLFTDYYSRARSAEQITDSVRRHMAAFR 262
|
Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). Bos taurus (taxid: 9913) |
| >sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 136/211 (64%), Gaps = 14/211 (6%)
Query: 117 FLLLALTGAGII---WYYDKEKEQHIEEINSASQAVKQGPSVGKAAIG-GPFKLINHDGK 172
++ L G GII WY +EKE+ I+ Q ++Q + K A+G G F L++H G+
Sbjct: 73 LVVTLLFGGGIIGTWWYVHQEKEKRIQ-----MQRLEQ---LRKVALGQGDFHLLDHTGQ 124
Query: 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFISVDPERD 231
T++DFLG W ++YFGFTHCPDICPDEL+KL + V + ++ + + P FI+VDPERD
Sbjct: 125 RRTKRDFLGHWVLLYFGFTHCPDICPDELEKLTSVVHILDKDPSLPSVQPLFITVDPERD 184
Query: 232 TVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAEEDSDYLVDHSIVMYLMS 290
V + YVK+FHP+L+GLTGS +E++ R +RVY +ED DY+VDHSIV+YL++
Sbjct: 185 DVSAMARYVKDFHPRLVGLTGSAEEVKQAGRDFRVYASNGPKDEDGDYIVDHSIVIYLVN 244
Query: 291 PKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
P F+ ++ + + +A+ I +K + R
Sbjct: 245 PDGLFIDYYNRMKNDTQIAESIRNHMKTFVR 275
|
Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). Danio rerio (taxid: 7955) |
| >sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 15/252 (5%)
Query: 73 TTTGTVQSGHSKPNSE---GGDKSGDSNQSKSDTGKPIRGGPISWLSFLLLALTGAGIIW 129
T T QS KP S GG D+ + + + + G I+ L LA+ GA + +
Sbjct: 35 TVTRLWQSNGKKPLSRVPVGGTPIKDNGKVREGSIEFSTGKAIA----LFLAVGGA-LSY 89
Query: 130 YYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG 189
++++EK + E ++A + GK ++GGPF L + G TEK+ LGK+++IYFG
Sbjct: 90 FFNREKRRL--ETQKEAEANR---GYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFG 144
Query: 190 FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249
F++CPDICPDEL KL ++ + GI + P FI+ DP RD+ ++EY+ +FHP ++G
Sbjct: 145 FSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILG 204
Query: 250 LTGSPDEIRNIARAYRVYYMK--TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307
LTG+ DE++N + YRVY+ + DYLVDHSI YLM P+ +FV G+N D +
Sbjct: 205 LTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKT 264
Query: 308 LADGIIKEIKQY 319
D I++ +K Y
Sbjct: 265 GVDKIVEHVKSY 276
|
Required for the accumulation of subunits 1 and 2 of cytochrome c oxidase complex. Thought to play a role in either mitochondrial copper transport or insertion of copper into the active site of COX. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 119/177 (67%), Gaps = 3/177 (1%)
Query: 147 QAVKQGPSVGKAAIG-GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLA 205
Q K+ ++ +AA+G G F L++H G+ + DF G+W ++YFGFTHCPDICPDEL+KL
Sbjct: 86 QQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLV 145
Query: 206 AAVDKIKENSGIDIV-PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAY 264
V +++ G+ V P FI+VDPERD VE + YV++FHP+L+GLTGS ++ + +Y
Sbjct: 146 QVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSY 205
Query: 265 RVYY-MKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
RVYY +ED DY+VDHSI +YL++P F ++G++ ++D + + + ++
Sbjct: 206 RVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 262
|
Acts as a copper chaperone, transporting copper to the Cu(A) site on the cytochrome c oxidase subunit II (COX2). Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 321 | ||||||
| 449461769 | 324 | PREDICTED: protein SCO1 homolog 1, mitoc | 0.984 | 0.975 | 0.668 | 1e-117 | |
| 356568118 | 331 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.981 | 0.951 | 0.620 | 1e-111 | |
| 224140443 | 327 | predicted protein [Populus trichocarpa] | 0.950 | 0.932 | 0.615 | 1e-110 | |
| 356521038 | 332 | PREDICTED: protein SCO1 homolog 1, mitoc | 0.981 | 0.948 | 0.616 | 1e-109 | |
| 297829422 | 334 | electron transport SCO1/SenC family prot | 0.996 | 0.958 | 0.576 | 1e-108 | |
| 18398306 | 334 | electron transport SCO1/SenC-like protei | 0.996 | 0.958 | 0.573 | 1e-108 | |
| 118488619 | 317 | unknown [Populus trichocarpa] | 0.919 | 0.930 | 0.600 | 1e-105 | |
| 225439390 | 302 | PREDICTED: protein SCO1 homolog 1, mitoc | 0.937 | 0.996 | 0.609 | 1e-103 | |
| 212275264 | 307 | uncharacterized protein LOC100191148 [Ze | 0.906 | 0.947 | 0.610 | 1e-102 | |
| 6403490 | 273 | putative SCO1 protein [Arabidopsis thali | 0.800 | 0.941 | 0.654 | 1e-102 |
| >gi|449461769|ref|XP_004148614.1| PREDICTED: protein SCO1 homolog 1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/329 (66%), Positives = 254/329 (77%), Gaps = 13/329 (3%)
Query: 1 MATAIVRSAKNFRNLHQRFYFHTL----LTKCRPPIPSPTIADNIQHRALPLIQQAIPFG 56
MAT I RSAK+ + F H + ++ S N A PL + P G
Sbjct: 1 MATIISRSAKHLHYANLSFSLHRMRLHSISPSPSTSSSVLAGANFHDPAFPL--HSGP-G 57
Query: 57 IGFQSFVADQRFSSTSTTTGTVQSGHSKP---NSEGGDKSGDSNQSKSDTGKPIRGGPIS 113
+ F + + +S+TSTT + + K NS GDKSG+SN+ + D GKP+RGGP+S
Sbjct: 58 MNFLATYMRRLYSTTSTTADSQSAASEKSAESNSSEGDKSGNSNEGQ-DAGKPVRGGPVS 116
Query: 114 WLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKN 173
WLSFLLL TGAG+++YYD+EK++HIEEIN AS VKQGPSVGKAAIGGPFKL+NHDGK
Sbjct: 117 WLSFLLLVATGAGLVFYYDREKKRHIEEINKASTEVKQGPSVGKAAIGGPFKLVNHDGKQ 176
Query: 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233
VTEKDF GKWT++YFGFTHCPDICPDELQKLAAAVDKIK+ +GI IVP FISVDPERDTV
Sbjct: 177 VTEKDFFGKWTLLYFGFTHCPDICPDELQKLAAAVDKIKK-AGIKIVPVFISVDPERDTV 235
Query: 234 EQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-K 292
EQVREYVKEFHP L+GLTGS DEIRN+ARAYRVYYMKT EEDSDYLVDHSIVMYLM P K
Sbjct: 236 EQVREYVKEFHPDLVGLTGSSDEIRNVARAYRVYYMKTEEEDSDYLVDHSIVMYLMGPEK 295
Query: 293 MEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
MEFVKFFGKNNDV+SLADG+IKEIKQYK+
Sbjct: 296 MEFVKFFGKNNDVDSLADGVIKEIKQYKK 324
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568118|ref|XP_003552260.1| PREDICTED: LOW QUALITY PROTEIN: protein SCO1 homolog 1, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/337 (62%), Positives = 248/337 (73%), Gaps = 22/337 (6%)
Query: 1 MATAIVRSAKNFRNLHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIG-- 58
MA+ + A FR R F LL + RP SP + ++Q P + +G G
Sbjct: 1 MASIVSTKANQFR-YSTRLLFSHLLRQGRPSTLSPPFSSHLQPLHHPYKVRNQSYGNGSL 59
Query: 59 --FQSF-----------VADQRFSSTSTTTGTVQSGHSKPNSEGGDKSGDSNQSKSDTGK 105
Q F V+ ++ +S S + SG K + GGD+ KSD GK
Sbjct: 60 RLCQRFLSSSSSPPAANVSGEKPASDSDHSAKDGSGQGKESGSGGDEG-----QKSDAGK 114
Query: 106 PIRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEE-INSASQAVKQGPSVGKAAIGGPF 164
+RGGP+SWLSFLLL LTGAG+++YYD+EK++HI I S AVKQGPSVG AAIGGPF
Sbjct: 115 SVRGGPVSWLSFLLLVLTGAGLVFYYDREKKRHIXRXITMVSLAVKQGPSVGTAAIGGPF 174
Query: 165 KLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 224
L+NH GK+VTEKD LGKWT++YFGFTHCPDICP+ELQKLAAAVDKIKE +GI+ VP FI
Sbjct: 175 HLVNHHGKHVTEKDXLGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFI 234
Query: 225 SVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSI 284
SVDPERDTVEQV EYVKEFHPKLIGLTGSPDEI+N+ARAYRVYYMKTAEEDSDYLVDHSI
Sbjct: 235 SVDPERDTVEQVGEYVKEFHPKLIGLTGSPDEIKNVARAYRVYYMKTAEEDSDYLVDHSI 294
Query: 285 VMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
V+YLMSP+M+FVKFFGKNNDV+SLADG+IKE+KQYK+
Sbjct: 295 VIYLMSPEMKFVKFFGKNNDVDSLADGVIKEVKQYKK 331
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140443|ref|XP_002323592.1| predicted protein [Populus trichocarpa] gi|222868222|gb|EEF05353.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/333 (61%), Positives = 237/333 (71%), Gaps = 28/333 (8%)
Query: 2 ATAIVRSAKNFRN----LHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGI 57
TA+ R A + R+ L R+ H T PP P P + +P G
Sbjct: 3 TTALSRKANHLRHTYRCLTSRYLSHCTTTSSNPPSPLP--------------RSVLPLGG 48
Query: 58 GFQSFVA-DQRF---SSTSTTTGTVQSGHSK----PNSEGGDKSGDSNQS--KSDTGKPI 107
G QS QRF +S TTT V S SK S+G +KSGDSN K++ + +
Sbjct: 49 GIQSLPQITQRFLFSTSIPTTTTVVDSETSKNTEEAKSDGSEKSGDSNHQDDKNNARRTV 108
Query: 108 RGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLI 167
R GPISWLSFL LA TGAG+IWYYD+ K+Q IE IN S VK GPSVGK IGGPF LI
Sbjct: 109 RRGPISWLSFLFLAATGAGLIWYYDRMKKQRIEAINKTSAIVKVGPSVGKPEIGGPFNLI 168
Query: 168 NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227
+HDGK V+EKDF+GKWT+IYFGFTHCPDICPDELQKLAAA+DKIKE +G DIVP FI+VD
Sbjct: 169 DHDGKPVSEKDFMGKWTMIYFGFTHCPDICPDELQKLAAAIDKIKEKAGFDIVPVFITVD 228
Query: 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMY 287
PERD VEQVREYVKEFHPKLIGLTGS +EI+ ARAYR+YYMKT+EEDSDYLVDHSI+ Y
Sbjct: 229 PERDNVEQVREYVKEFHPKLIGLTGSLEEIKKTARAYRIYYMKTSEEDSDYLVDHSIITY 288
Query: 288 LMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
LM P ME VKFFGKNND ++LADG+IKE+KQYK
Sbjct: 289 LMDPNMELVKFFGKNNDADALADGVIKEMKQYK 321
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521038|ref|XP_003529165.1| PREDICTED: protein SCO1 homolog 1, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/331 (61%), Positives = 241/331 (72%), Gaps = 16/331 (4%)
Query: 5 IVRSAKNFRNLHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIGFQSFVA 64
IV S N R F LL RP P + ++Q P Q G G S
Sbjct: 4 IVSSKVNQFRYSTRLLFSHLLRHGRPSTLLPPFSSHLQPLHHP--HQVGNQGYGNGSLGL 61
Query: 65 DQRF-----------SSTSTTTGTVQSGHSKPNSEGGDK---SGDSNQSKSDTGKPIRGG 110
R ++ S + S S + G ++ SG KSD GK +RGG
Sbjct: 62 CPRLLSSSSSSDASAANVSGEKPALDSDQSAKDGSGKERESGSGGGQDQKSDAGKSVRGG 121
Query: 111 PISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHD 170
P+SWLSFLLL LTGAG+++YYD+EK++HIE I + ++AVKQGPS GKAAIGGPF LINH
Sbjct: 122 PVSWLSFLLLVLTGAGLVFYYDREKKRHIEGIRTNTEAVKQGPSAGKAAIGGPFCLINHH 181
Query: 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230
GK+VTEKDF+GKWT++YFGFTHCPDICP+ELQKLAAAVDKIKE +GI+ VP FISVDPER
Sbjct: 182 GKHVTEKDFMGKWTLLYFGFTHCPDICPEELQKLAAAVDKIKEKAGIETVPVFISVDPER 241
Query: 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMS 290
DTVEQV EYVKEFHPKLIGLTGSPDE++N+ARAYRVYYMKTAEEDSDYLVDHSIV+YLMS
Sbjct: 242 DTVEQVGEYVKEFHPKLIGLTGSPDEVKNVARAYRVYYMKTAEEDSDYLVDHSIVIYLMS 301
Query: 291 PKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
P+MEFVKFFGKNNDV+SLADG+IKE+ Q+K+
Sbjct: 302 PEMEFVKFFGKNNDVDSLADGVIKEVTQHKK 332
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829422|ref|XP_002882593.1| electron transport SCO1/SenC family protein [Arabidopsis lyrata subsp. lyrata] gi|297328433|gb|EFH58852.1| electron transport SCO1/SenC family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/335 (57%), Positives = 246/335 (73%), Gaps = 15/335 (4%)
Query: 1 MATAIVRSAKNFRNLH--QRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIG 58
MA+A+ R+A R++ +R + L P P+ I+D ++H L + G
Sbjct: 1 MASALCRTASRLRSIQICRRIRVSSDLLSASSPFPA-CISDALRHGDFSLPRSFFSLNCG 59
Query: 59 FQSFVADQRF---SSTSTTTGTVQSGHSKPNSEGGDK---------SGDSNQSKSDTGKP 106
+ DQR +S S TT SG S+ S ++ G ++ +GK
Sbjct: 60 IEMMKMDQRCLLSTSASDTTSKPDSGKSETKSSVKNEKSGGSESSDGGSDQRNNRASGKD 119
Query: 107 IRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKL 166
+RGGP+SW+SF LL TGAG+++YYD+EK++HIE+IN S AVK+GPS GKAAIGGPF L
Sbjct: 120 VRGGPVSWMSFFLLFATGAGLVYYYDREKKRHIEDINKNSIAVKEGPSAGKAAIGGPFNL 179
Query: 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226
I DGK VTEKD +GKW+++YFGFTHCPDICPDEL KLAAA+DKIKENSG+D+VP FISV
Sbjct: 180 IRDDGKRVTEKDLMGKWSILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISV 239
Query: 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVM 286
DPERDTV+QV EYVKEFHPKLIGLTGSP+EI+++AR+YRVYYMKT EEDSDYLVDHSIVM
Sbjct: 240 DPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVM 299
Query: 287 YLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
YLMSP+M FVKF+GKN+DV+SL DG++KEI+QY++
Sbjct: 300 YLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQYRK 334
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398306|ref|NP_566339.1| electron transport SCO1/SenC-like protein [Arabidopsis thaliana] gi|75161513|sp|Q8VYP0.1|SCO11_ARATH RecName: Full=Protein SCO1 homolog 1, mitochondrial; AltName: Full=Homolog of the copper chaperone SCO1 member 1; Short=HCC1; Flags: Precursor gi|17979327|gb|AAL49889.1| putative SCO1 protein [Arabidopsis thaliana] gi|20465763|gb|AAM20370.1| putative SCO1 protein [Arabidopsis thaliana] gi|21553398|gb|AAM62491.1| putative SCO1 protein [Arabidopsis thaliana] gi|332641180|gb|AEE74701.1| electron transport SCO1/SenC-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/335 (57%), Positives = 248/335 (74%), Gaps = 15/335 (4%)
Query: 1 MATAIVRSAKNFRN--LHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIG 58
MA+A+ R+A R+ L +R + L P P+ I+D ++H L + G
Sbjct: 1 MASALCRTASRLRSVQLFRRIRVSSDLLSASSPSPA-CISDALRHGDFSLPRSFFSLNCG 59
Query: 59 FQSFVADQR-FSSTSTTTGTVQSGHSKPNSEGGDKS-----------GDSNQSKSDTGKP 106
+ DQR STS + T + KP ++ +K+ G ++++ +GK
Sbjct: 60 IEMLKMDQRCLLSTSASDTTSKHDSGKPETKSSEKNEKSGGSESSDGGSDHKNERASGKD 119
Query: 107 IRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKL 166
+RGGP+SW+SF LL TGAG+++YYD +K++HIE+IN S AVK+GPS GKAAIGGPF L
Sbjct: 120 VRGGPVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSL 179
Query: 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226
I DGK VTEK+ +GKWT++YFGFTHCPDICPDEL KLAAA+DKIKENSG+D+VP FISV
Sbjct: 180 IRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISV 239
Query: 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVM 286
DPERDTV+QV EYVKEFHPKLIGLTGSP+EI+++AR+YRVYYMKT EEDSDYLVDHSIVM
Sbjct: 240 DPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVM 299
Query: 287 YLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
YLMSP+M FVKF+GKN+DV+SL DG++KEI+QY++
Sbjct: 300 YLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQYRK 334
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488619|gb|ABK96122.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/333 (60%), Positives = 232/333 (69%), Gaps = 38/333 (11%)
Query: 2 ATAIVRSAKNFRN----LHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGI 57
TA+ R A + R+ L R+ H T PP P P + +P G
Sbjct: 3 TTALSRKANHLRHTYRCLTSRYLSHCTTTSSNPPSPLP--------------RSVLPLGG 48
Query: 58 GFQSFVA-DQRF---SSTSTTTGTVQSGHSK----PNSEGGDKSGDSNQS--KSDTGKPI 107
G QS QRF +S TTT V S SK S+G +KSGDSN K++ + +
Sbjct: 49 GIQSLPQITQRFLFSTSIPTTTTVVDSETSKNTEEAKSDGSEKSGDSNHQDDKNNARRTV 108
Query: 108 RGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLI 167
R GPISWLSFL LA TGAG+IWYYD+ K+Q IE GPSVGK IGGPF LI
Sbjct: 109 RRGPISWLSFLFLAATGAGLIWYYDRMKKQRIE----------VGPSVGKPEIGGPFNLI 158
Query: 168 NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227
+HDGK V+EKDF+GKWT+IYFGFTHCPDICPDELQKLAAA+DKIKE +G DIVP FI+VD
Sbjct: 159 DHDGKPVSEKDFMGKWTMIYFGFTHCPDICPDELQKLAAAIDKIKEKAGFDIVPVFITVD 218
Query: 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMY 287
PERD VEQVREYVKEFHPKLIGLTGS +EI+ ARAYR+YYMKT+EEDSDYLVDHSI+ Y
Sbjct: 219 PERDNVEQVREYVKEFHPKLIGLTGSLEEIKKTARAYRIYYMKTSEEDSDYLVDHSIITY 278
Query: 288 LMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
LM P ME VKFFGKNND ++LADG+IKE+KQYK
Sbjct: 279 LMDPNMELVKFFGKNNDADALADGVIKEMKQYK 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439390|ref|XP_002263427.1| PREDICTED: protein SCO1 homolog 1, mitochondrial [Vitis vinifera] gi|296083175|emb|CBI22811.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/320 (60%), Positives = 229/320 (71%), Gaps = 19/320 (5%)
Query: 1 MATAIVRSAKNFRNLHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIGFQ 60
MA RSA+ +R+ L +C PSP + + Q +P G Q
Sbjct: 1 MANFASRSAQ--LRYFRRYLCSRALNQCSSTQPSPPLKFCNHFSS----QSIMPLRPGIQ 54
Query: 61 SFVADQRFSSTSTTTGTVQSGHSKPNSEGGDKSGDSNQSKSDTGKPIRGGPISWLSFLLL 120
+ + R+ T G SG G KS S SD GK +RGGP+SWLSFLLL
Sbjct: 55 TLMMHHRY--LCGTAGKSDSGE-------GQKSDQS----SDAGKAVRGGPVSWLSFLLL 101
Query: 121 ALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFL 180
TGAG+++YYD EK++HIEEIN++S AVK+GPS GKAAIGGPF LIN +GKNVTEKDF
Sbjct: 102 IFTGAGLVFYYDNEKKRHIEEINASSTAVKEGPSAGKAAIGGPFNLINDEGKNVTEKDFF 161
Query: 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240
GKWT+IYFGFTHCPDICPDEL K+A AVDKIK G+DIVP FISVDPERDTVEQV EYV
Sbjct: 162 GKWTLIYFGFTHCPDICPDELIKVADAVDKIKAKIGVDIVPVFISVDPERDTVEQVHEYV 221
Query: 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300
KEFHP LIGLTG+PDE+R ARAYRVYYMKT EE SDYLVDHSI+MYLM PKM+FVK FG
Sbjct: 222 KEFHPNLIGLTGNPDEVRKAARAYRVYYMKTEEEGSDYLVDHSIMMYLMGPKMDFVKNFG 281
Query: 301 KNNDVNSLADGIIKEIKQYK 320
KNNDV+SLA+GI++ +K+YK
Sbjct: 282 KNNDVDSLANGIMEAMKKYK 301
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212275264|ref|NP_001130056.1| uncharacterized protein LOC100191148 [Zea mays] gi|194688186|gb|ACF78177.1| unknown [Zea mays] gi|223972835|gb|ACN30605.1| unknown [Zea mays] gi|223974569|gb|ACN31472.1| unknown [Zea mays] gi|413935659|gb|AFW70210.1| hypothetical protein ZEAMMB73_243052 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/311 (61%), Positives = 228/311 (73%), Gaps = 20/311 (6%)
Query: 20 YFHTLLTKC-RPPIPSPTIADNIQHRALPLIQQ--AIPFGIGFQSFVADQRFSSTSTTTG 76
+ LL++ P +P P RALP + + A PFG GF V RF S +
Sbjct: 7 HLRALLSRALSPSLPPPG-------RALPQVTRPGASPFGAGF---VGRARFFSIDASAA 56
Query: 77 T-------VQSGHSKPNSEGGDKSGDSNQSKSDTGKPIRGGPISWLSFLLLALTGAGIIW 129
T EGG ++D GK +RGGP+SWLSFLLL +TG GII
Sbjct: 57 TQGGSKPPAPPPAGTAGGEGGGGGQSGKSEQADAGKAVRGGPVSWLSFLLLLVTGGGIIV 116
Query: 130 YYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG 189
YYDKEK++HIEE+ + + AVK G SVG AAIGGPFKL+NHDGK VTEKDFLGKWT++YFG
Sbjct: 117 YYDKEKKRHIEELKNRTSAVKPGQSVGTAAIGGPFKLLNHDGKPVTEKDFLGKWTLLYFG 176
Query: 190 FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249
FTHCPDICPDELQK+AAA+DKIKE + +D+VP FI+VDPERDTVEQVR+YVKEFHP L+G
Sbjct: 177 FTHCPDICPDELQKMAAAIDKIKEKAKLDVVPVFITVDPERDTVEQVRDYVKEFHPDLVG 236
Query: 250 LTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309
LTG+ DE+R +ARAYRVYYMKT EE SDYLVDHSIVMYLM P+M+FVKF+GKN D +SLA
Sbjct: 237 LTGTTDEVRQVARAYRVYYMKTEEEGSDYLVDHSIVMYLMDPEMKFVKFYGKNYDTDSLA 296
Query: 310 DGIIKEIKQYK 320
DGI+KEIK++K
Sbjct: 297 DGIVKEIKEHK 307
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6403490|gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/269 (65%), Positives = 220/269 (81%), Gaps = 12/269 (4%)
Query: 65 DQR-FSSTSTTTGTVQSGHSKPNSEGGDKS-----------GDSNQSKSDTGKPIRGGPI 112
DQR STS + T + KP ++ +K+ G ++++ +GK +RGGP+
Sbjct: 5 DQRCLLSTSASDTTSKHDSGKPETKSSEKNEKSGGSESSDGGSDHKNERASGKDVRGGPV 64
Query: 113 SWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGK 172
SW+SF LL TGAG+++YYD +K++HIE+IN S AVK+GPS GKAAIGGPF LI DGK
Sbjct: 65 SWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDDGK 124
Query: 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232
VTEK+ +GKWT++YFGFTHCPDICPDEL KLAAA+DKIKENSG+D+VP FISVDPERDT
Sbjct: 125 RVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISVDPERDT 184
Query: 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK 292
V+QV EYVKEFHPKLIGLTGSP+EI+++AR+YRVYYMKT EEDSDYLVDHSIVMYLMSP+
Sbjct: 185 VQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPE 244
Query: 293 MEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
M FVKF+GKN+DV+SL DG++KEI+QY++
Sbjct: 245 MNFVKFYGKNHDVDSLTDGVVKEIRQYRK 273
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 321 | ||||||
| TAIR|locus:2097673 | 334 | HCC1 "homologue of the copper | 0.996 | 0.958 | 0.582 | 2.7e-100 | |
| UNIPROTKB|O75880 | 301 | SCO1 "Protein SCO1 homolog, mi | 0.688 | 0.734 | 0.429 | 4.4e-52 | |
| UNIPROTKB|A1A4J8 | 305 | SCO1 "Protein SCO1 homolog, mi | 0.688 | 0.724 | 0.440 | 5.1e-51 | |
| UNIPROTKB|J9NS66 | 304 | SCO1 "Uncharacterized protein" | 0.688 | 0.726 | 0.431 | 8.3e-51 | |
| UNIPROTKB|F1SS60 | 305 | SCO1 "Uncharacterized protein" | 0.688 | 0.724 | 0.435 | 1.1e-50 | |
| RGD|1559538 | 284 | Sco1 "SCO1 cytochrome c oxidas | 0.666 | 0.753 | 0.442 | 2.2e-50 | |
| MGI|MGI:106362 | 284 | Sco1 "SCO cytochrome oxidase d | 0.697 | 0.788 | 0.429 | 2.8e-50 | |
| FB|FBgn0262467 | 251 | Scox "Synthesis of cytochrome | 0.638 | 0.816 | 0.466 | 2.3e-48 | |
| UNIPROTKB|G5EHG1 | 294 | MGCH7_ch7g787 "Uncharacterized | 0.641 | 0.700 | 0.437 | 9.8e-48 | |
| ASPGD|ASPL0000078140 | 287 | AN4842 [Emericella nidulans (t | 0.644 | 0.721 | 0.458 | 4.2e-47 |
| TAIR|locus:2097673 HCC1 "homologue of the copper chaperone SCO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 195/335 (58%), Positives = 243/335 (72%)
Query: 1 MATAIVRSAKNFRN--LHQRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIG 58
MA+A+ R+A R+ L +R + L P P+ I+D ++H L + G
Sbjct: 1 MASALCRTASRLRSVQLFRRIRVSSDLLSASSPSPA-CISDALRHGDFSLPRSFFSLNCG 59
Query: 59 FQSFVADQR-FXXXXXXXXXXXXXXXKP---NSEGGDKSGDSNQSK--SD------TGKP 106
+ DQR KP +SE +KSG S S SD +GK
Sbjct: 60 IEMLKMDQRCLLSTSASDTTSKHDSGKPETKSSEKNEKSGGSESSDGGSDHKNERASGKD 119
Query: 107 IRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKL 166
+RGGP+SW+SF LL TGAG+++YYD +K++HIE+IN S AVK+GPS GKAAIGGPF L
Sbjct: 120 VRGGPVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSL 179
Query: 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226
I DGK VTEK+ +GKWT++YFGFTHCPDICPDEL KLAAA+DKIKENSG+D+VP FISV
Sbjct: 180 IRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISV 239
Query: 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVM 286
DPERDTV+QV EYVKEFHPKLIGLTGSP+EI+++AR+YRVYYMKT EEDSDYLVDHSIVM
Sbjct: 240 DPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVM 299
Query: 287 YLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
YLMSP+M FVKF+GKN+DV+SL DG++KEI+QY++
Sbjct: 300 YLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQYRK 334
|
|
| UNIPROTKB|O75880 SCO1 "Protein SCO1 homolog, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 98/228 (42%), Positives = 145/228 (63%)
Query: 96 SNQSKSDTGKPIRGGPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSV 155
S + D+ +P + GP+SW S + G ++ K++ E++ Q +
Sbjct: 77 SQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQR-----HI 131
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
GK +GGPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K+ VD+I +
Sbjct: 132 GKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT 191
Query: 216 GI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAE 273
+ D+ P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY +
Sbjct: 192 TLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKD 251
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ Y++
Sbjct: 252 EDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRK 299
|
|
| UNIPROTKB|A1A4J8 SCO1 "Protein SCO1 homolog, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 103/234 (44%), Positives = 152/234 (64%)
Query: 93 SGDSNQSKSDTGKPIRGGPISWLSFLL-LALTGAGI--IWYYDKEKEQHIEEINSASQAV 149
SG + D +P + GP+SW S + A+ GA + + Y+ KEK + +E+
Sbjct: 78 SGPEWKGSGDPMRPSKPGPVSWKSLAVTFAIGGALLAGMKYFKKEKTEKLEK-------- 129
Query: 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVD 209
++ S+GK +GGPF L H G+ T+KD+LG+W +IYFGFTHCPDICP+EL+K+ VD
Sbjct: 130 ERHRSIGKPLLGGPFSLTTHTGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVD 189
Query: 210 KIKENSGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
+I + ++ P FI++DPERDT E + YVKEF PKLIGLTG+ +EI +ARA+RVYY
Sbjct: 190 EIDSIPTLPNLTPLFITIDPERDTKEAIANYVKEFSPKLIGLTGTKEEIDQVARAFRVYY 249
Query: 269 MK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ +++
Sbjct: 250 SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKKNAEIAGSIAAHMRTHRK 303
|
|
| UNIPROTKB|J9NS66 SCO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 101/234 (43%), Positives = 153/234 (65%)
Query: 93 SGDSNQSKSDTGKPIRGGPISWLSFLL-LALTGAGI--IWYYDKEKEQHIEEINSASQAV 149
SG + + D +P + GP+SW S A+ GA + + Y+ KEK + +E+
Sbjct: 77 SGSEPKGRRDPTRPSKPGPVSWKSLAFTFAIGGALLAGMKYFKKEKTRKLEK-------- 128
Query: 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVD 209
++ S+GK +GGPF L H G+ T++D++G+W +IYFGFTHCPD+CP+EL+K+ VD
Sbjct: 129 ERQRSLGKPLLGGPFSLTTHTGEPKTDRDYVGQWVLIYFGFTHCPDVCPEELEKMIQVVD 188
Query: 210 KIKENSGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
+I + ++ P FI++DPERDT E + YVKEF PKLIGLTG+ +EI +ARAYRVYY
Sbjct: 189 EIDSIPTLPNLTPLFITIDPERDTKEAIANYVKEFSPKLIGLTGTKEEIDQVARAYRVYY 248
Query: 269 MK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ED DY+VDH+I+MYL+ P +F+ +FG+N +A I +++++R
Sbjct: 249 SPGPKDEDEDYIVDHTIIMYLIGPDGQFLDYFGQNKKNAEIAGCIAAHMREHRR 302
|
|
| UNIPROTKB|F1SS60 SCO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 102/234 (43%), Positives = 150/234 (64%)
Query: 93 SGDSNQSKSDTGKPIRGGPISWLSFLL-LALTGAGI--IWYYDKEKEQHIEEINSASQAV 149
SG + D +P + GP+SW S + A+ GA + + Y KEK + +E+
Sbjct: 78 SGPELKGSRDPTRPSKPGPVSWKSLAITFAIGGALLAGMKYLKKEKTEKLEK-------- 129
Query: 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVD 209
++ S+GK +GGPF L H G+ T+KD+LG+W +IYFGFTHCPDICP+EL+K+ VD
Sbjct: 130 ERQRSIGKPLLGGPFSLTTHTGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVD 189
Query: 210 KIKENSGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
+I + ++ P FI++DPERDT E + YVKEF PKLIGLTG+ + I +ARA+RVYY
Sbjct: 190 EIDSIPTLPNLTPLFITIDPERDTEEAIANYVKEFSPKLIGLTGTKEAIDQVARAFRVYY 249
Query: 269 MK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ +++
Sbjct: 250 SPGPKDEDEDYIVDHTIIMYLIGPDGEFIDYFGQNKKNGEIAGSIAAHMRNHRK 303
|
|
| RGD|1559538 Sco1 "SCO1 cytochrome c oxidase assembly protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 101/228 (44%), Positives = 149/228 (65%)
Query: 99 SKSDTGKPIRGGPISWLSFLLLALTGAGIIW---YYDKEKEQHIEEINSASQAVKQGPSV 155
S++ + +P + GP+SW S L G ++ Y+ KEK + +E+ ++ S+
Sbjct: 64 SQAGSHRP-KLGPVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEK--------QRHRSI 114
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
GK +GGPF L H+G+ T+KDFLG+W +IYFGFTHCPDICP+EL+K+ V++I
Sbjct: 115 GKPLLGGPFSLTTHNGEPKTDKDFLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIP 174
Query: 216 GI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAE 273
+ ++ P FI++DPERDT E + YVKEF PKL+GLTG+ +EI +ARAYRVYY +
Sbjct: 175 SLPNLTPLFITIDPERDTKEAIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKD 234
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ + R
Sbjct: 235 EDEDYIVDHTIIMYLIGPDGEFLDYFGQNKKKAEIAGSIAAHMRSHMR 282
|
|
| MGI|MGI:106362 Sco1 "SCO cytochrome oxidase deficient homolog 1 (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 104/242 (42%), Positives = 151/242 (62%)
Query: 85 PNSEGGDKSGDSNQSKSDTGKPIRGGPISWLSFLLLALTGAGIIW---YYDKEKEQHIEE 141
P G + G Q+ S KP GP+SW S L G ++ Y+ KEK + +E+
Sbjct: 54 PPGAGPEPKG--GQAGSHRPKP---GPVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEK 108
Query: 142 INSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDEL 201
++ S+GK +GGPF L H+G+ T+KD+LG+W +IYFGFTHCPDICP+EL
Sbjct: 109 --------QRHRSIGKPLLGGPFSLTTHNGEPKTDKDYLGQWVLIYFGFTHCPDICPEEL 160
Query: 202 QKLAAAVDKIKENSGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260
+K+ V++I + ++ P FI++DPERDT E + YVKEF PKL+GLTG+ +EI +
Sbjct: 161 EKMIEVVEEIDSIPSLPNLTPLFITIDPERDTKEAIATYVKEFSPKLVGLTGTKEEIDGV 220
Query: 261 ARAYRVYYMK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
ARAYRVYY +ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ +
Sbjct: 221 ARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKKKAEIAGSIAAHMRSH 280
Query: 320 KR 321
+
Sbjct: 281 MK 282
|
|
| FB|FBgn0262467 Scox "Synthesis of cytochrome c oxidase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 99/212 (46%), Positives = 144/212 (67%)
Query: 110 GPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINH 169
GPISW S ++ GAG + + K + E A +Q +GKAAIGG ++L++
Sbjct: 35 GPISWRSLAVIGALGAGGVGFMLYVKSEKDE----ARMKERQR-QLGKAAIGGSWELVDS 89
Query: 170 DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIV-PAFISVDP 228
G +DFLGKW +IYFGFTHCPDICPDEL+K+AA VD+++++ V P FI+VDP
Sbjct: 90 QGAVRKSEDFLGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPAVQPIFITVDP 149
Query: 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAEEDSDYLVDHSIVMY 287
ERD+ E V +YVKEF PKL+GLTG+ ++IR + +A+RVY+ +ED+DY+VDH+I+MY
Sbjct: 150 ERDSKEVVAKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPRDEDNDYIVDHTIIMY 209
Query: 288 LMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
L++P EFV ++G+N D + I+ I ++
Sbjct: 210 LVNPDGEFVDYYGQNRDKDQCVASILVNIAKW 241
|
|
| UNIPROTKB|G5EHG1 MGCH7_ch7g787 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 95/217 (43%), Positives = 143/217 (65%)
Query: 108 RGGPISWLSFLLLALTGAGIIWYYDKEKEQ-HIEEINSASQAVKQGPSVGKAAIGGPFKL 166
R GP SW + ++ +T AG++WY D EKE+ H + I AS+ V GK IGG F+L
Sbjct: 79 RSGPFSWKAGVIFVMTAAGLVWYMDHEKERMHKKRIADASKGV------GKPRIGGAFEL 132
Query: 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI-KENSGIDIVPAFIS 225
I+ DG+ + G+++++YFGF+HCPDICP+EL K+A D++ KE G + P F++
Sbjct: 133 IDQDGRPFSSDSLKGRYSLVYFGFSHCPDICPEELDKMALMFDEVQKERPGA-LAPVFVT 191
Query: 226 VDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM--KTAEEDSDYLVDHS 283
DPERDT E ++EY+ EFHP IGLTG+ ++I+ + +AYRVY+ + + DYLVDHS
Sbjct: 192 CDPERDTPEVLKEYLAEFHPDFIGLTGTYEQIKAMCKAYRVYFSTPRDVKPGQDYLVDHS 251
Query: 284 IVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
I YLM P+ +FV+ G+ + + A+ I+ +K+YK
Sbjct: 252 IYFYLMDPEGDFVEALGRQHSPKAGANIILDHMKEYK 288
|
|
| ASPGD|ASPL0000078140 AN4842 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 99/216 (45%), Positives = 143/216 (66%)
Query: 110 GPISWLSFLLLALTGAGIIWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINH 169
GP SW + LL LTGAG+I Y+ EKE+ +E A + +G VG+ +GGPF L +
Sbjct: 69 GPFSWKAALLFVLTGAGMIIYFRVEKER-LERKRIAEMS--KG--VGRPKVGGPFVLKDL 123
Query: 170 DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE-NSGIDI-VPAFISVD 227
+G TE++ GK++ +YFGFTHCPDICPDEL K+A +DK+KE N G +I VP FI+ D
Sbjct: 124 NGDVFTEENLKGKYSFVYFGFTHCPDICPDELDKMAEIIDKVKEANKGENIFVPVFITCD 183
Query: 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM--KTAEEDSDYLVDHSIV 285
P RDT E +R Y++EFH +IGLTG+ ++++ + +AYRVY+ + + DYLVDHSI
Sbjct: 184 PARDTPEVLRNYLQEFHKDIIGLTGTYEQVKQVCKAYRVYFSTPRDVKPGEDYLVDHSIY 243
Query: 286 MYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
YLM P+ +FV+ G+ + + I++ I +KR
Sbjct: 244 FYLMDPEGDFVECIGRQDTPETATKTIMEHINDWKR 279
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8VYP0 | SCO11_ARATH | No assigned EC number | 0.5731 | 0.9968 | 0.9580 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh2_kg.3__904__AT3G08950.1 | annotation not avaliable (334 aa) | ||||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| fgenesh1_pg.C_scaffold_8000176 | annotation not avaliable (257 aa) | • | • | • | • | 0.727 | |||||
| scaffold_100176.1 | annotation not avaliable (287 aa) | • | • | • | • | 0.636 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 321 | |||
| cd02968 | 142 | cd02968, SCO, SCO (an acronym for Synthesis of Cyt | 1e-69 | |
| COG1999 | 207 | COG1999, COG1999, Uncharacterized protein SCO1/Sen | 2e-56 | |
| pfam02630 | 152 | pfam02630, SCO1-SenC, SCO1/SenC | 6e-51 | |
| pfam00578 | 124 | pfam00578, AhpC-TSA, AhpC/TSA family | 6e-11 | |
| cd02966 | 116 | cd02966, TlpA_like_family, TlpA-like family; compo | 5e-09 | |
| pfam13905 | 94 | pfam13905, Thioredoxin_8, Thioredoxin-like | 4e-06 | |
| cd03015 | 173 | cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, | 2e-05 | |
| cd02971 | 140 | cd02971, PRX_family, Peroxiredoxin (PRX) family; c | 4e-05 | |
| cd02969 | 171 | cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 fam | 2e-04 | |
| cd03017 | 140 | cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact | 2e-04 | |
| TIGR03137 | 187 | TIGR03137, AhpC, peroxiredoxin | 3e-04 | |
| COG1225 | 157 | COG1225, Bcp, Peroxiredoxin [Posttranslational mod | 4e-04 |
| >gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 1e-69
Identities = 70/141 (49%), Positives = 95/141 (67%)
Query: 160 IGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
IG F L + DG+ VT D GK ++YFG+THCPD+CP L LA A+ ++ + G D+
Sbjct: 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDV 60
Query: 220 VPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYL 279
FISVDPERDT E ++ Y K F P IGLTG+P+EI +A+A+ VYY K E+D DYL
Sbjct: 61 QVVFISVDPERDTPEVLKAYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYL 120
Query: 280 VDHSIVMYLMSPKMEFVKFFG 300
VDHS +YL+ P + V+++G
Sbjct: 121 VDHSAAIYLVDPDGKLVRYYG 141
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142 |
| >gnl|CDD|224910 COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 2e-56
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 6/175 (3%)
Query: 145 ASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL 204
+ + + IGG F+L + DGK T KD GK ++++FG+THCPD+CP L +L
Sbjct: 31 SDKGDRFNLDAAAVYIGGDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAEL 90
Query: 205 AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE-FHPKLIGLTGSPDEIRNIARA 263
A + K+ E G D+ FI+VDPERDT E +++Y + F P+ IGLTG+P++I +A+A
Sbjct: 91 KALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIEEVAKA 150
Query: 264 YRVYYMKTAEEDS-DYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317
Y V+Y K +DS +Y +DHS YL+ F+ + D + I ++K
Sbjct: 151 YGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY----DYGEPPEEIAADLK 201
|
Length = 207 |
| >gnl|CDD|202321 pfam02630, SCO1-SenC, SCO1/SenC | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 6e-51
Identities = 71/146 (48%), Positives = 102/146 (69%), Gaps = 3/146 (2%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
K ++GGPF LI+ +GKN T ++ GK ++IYFGFT+CPDICP L +L + K+K
Sbjct: 5 PKNSLGGPFTLIDQNGKNFTSENLKGKLSLIYFGFTNCPDICPPALDRLTDIIKKLKAE- 63
Query: 216 GIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK--TAE 273
ID+ P FISVDPERDT + ++EY+K FHP IGLTG+ DEI+++A+ ++V+Y K +
Sbjct: 64 NIDVQPVFISVDPERDTPKVLKEYLKNFHPSFIGLTGTTDEIKSVAKKFKVFYSKVIVDK 123
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFF 299
+ DYLVDHS YL+ P + +K +
Sbjct: 124 PEQDYLVDHSSFFYLIDPDGKILKHY 149
|
This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus. Length = 152 |
| >gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-11
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Query: 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYF-GFTHCPDICPDELQKLAAAVDKIKE 213
VG A F+L + DGK V+ D+ GKW V++F P +C EL LA ++ K+
Sbjct: 1 VGDKAP--DFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTP-VCTTELPALADLYEEFKK 57
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT---GSPDEIRNIARAYRVYYMK 270
G++++ +SV D+ E +++ ++ +GL S D +A+AY V +
Sbjct: 58 L-GVEVL--GVSV----DSPESHKKFAEK-----LGLPFPLLS-DPDGEVAKAYGVLNEE 104
Query: 271 T 271
Sbjct: 105 E 105
|
This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124 |
| >gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-09
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222
F L + DGK V+ D GK ++ F + CP C E+ +L A + K++ G+++V
Sbjct: 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCP-PCRAEMPELEALAKEYKDD-GVEVV-- 56
Query: 223 FISVDPERDTVEQVREYVKEFHPKL-IGLTGSPDEIRNIARAYRVYYM 269
++VD D V+ ++K++ + L D +A+AY V +
Sbjct: 57 GVNVD--DDDPAAVKAFLKKYGITFPVLL----DPDGELAKAYGVRGL 98
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116 |
| >gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-06
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240
GK ++YF + CP C +L +K+K+ + ++S+D + E+ ++Y+
Sbjct: 1 GKVVLLYFWASWCPP-CRAFTPELKELYEKLKKP---KVEIVYVSLDRDE---EEWKKYL 53
Query: 241 KEFHPKLIGLTGSPDEIRNIARAYRV 266
K+ + + E + R Y V
Sbjct: 54 KKMPKDWLNVPFGDKERNELLRLYGV 79
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94 |
| >gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-05
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 33/129 (25%)
Query: 155 VGKAAIGGPFKLI----NHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAA 207
VGK A FK N + K ++ D+ GKW V++F FT +CP E+ +
Sbjct: 1 VGKKAP--DFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTF---VCPTEIIAFSDR 55
Query: 208 VDKIKENSGIDIVPAFISVDPERDTVEQVREYV----KEFHPKLIGLTGSP-----DEIR 258
++ K+ ++ +S D + + K GL D +
Sbjct: 56 YEEFKK---LNAEVLGVSTD---------SHFSHLAWRNTPRKEGGLGKINFPLLADPKK 103
Query: 259 NIARAYRVY 267
I+R Y V
Sbjct: 104 KISRDYGVL 112
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173 |
| >gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-05
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAVDKIKENSGIDIV 220
F L DG V+ DF GKW V++F FT P +C EL ++ + G +++
Sbjct: 5 FTLPATDGGEVSLSDFKGKWVVLFFYPKDFT--P-VCTTELCAFRDLAEEFAKG-GAEVL 60
Query: 221 PAFISVD 227
+SVD
Sbjct: 61 --GVSVD 65
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140 |
| >gnl|CDD|239267 cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 164 FKLINHDGKNVTEKDFL-GKWTVIYFGFTHCP---DICPDELQKLAAAVDKIKENSGIDI 219
F L + DGK + DF GK V+ F HCP I D L +LA G+ +
Sbjct: 7 FSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAI-EDRLNRLAKE----YGAKGVAV 61
Query: 220 VPAFISVDPER---DTVEQVREYVKEFH---PKLIGLTGSPDEIRNIARAYR 265
V A S D E D+ E ++ KE P L+ DE + +A+AY
Sbjct: 62 V-AINSNDIEAYPEDSPENMKAKAKEHGYPFPYLL------DETQEVAKAYG 106
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Length = 171 |
| >gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYF 188
F L + DG+ V+ D GK V+YF
Sbjct: 6 FTLPDQDGETVSLSDLRGKPVVLYF 30
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140 |
| >gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 163 PFKLIN-HDGK--NVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAVDKIKE 213
PFK H+G+ VT++D GKW+V +F FT +CP EL+ LA ++K+
Sbjct: 10 PFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTF---VCPTELEDLADNYAELKK 63
|
This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187 |
| >gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYF-GFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222
F+L + DG+ V+ D GK V+YF P C E +++ E G ++
Sbjct: 13 FELPDQDGETVSLSDLRGKPVVLYFYPKDFTP-GCTTEACDFRDLLEEF-EKLGAVVLG- 69
Query: 223 FISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT 271
IS D + +++ ++ L DE +A AY V+ K
Sbjct: 70 -ISPDS----PKSHKKFAEKHGLTFPLL---SDEDGEVAEAYGVWGEKK 110
|
Length = 157 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 321 | |||
| KOG2792 | 280 | consensus Putative cytochrome C oxidase assembly p | 100.0 | |
| COG1999 | 207 | Uncharacterized protein SCO1/SenC/PrrC, involved i | 99.96 | |
| PF02630 | 174 | SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam | 99.95 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 99.93 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.93 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 99.91 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.91 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 99.9 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 99.89 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 99.89 | |
| PLN02412 | 167 | probable glutathione peroxidase | 99.89 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 99.89 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.89 | |
| COG1225 | 157 | Bcp Peroxiredoxin [Posttranslational modification, | 99.89 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 99.88 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 99.88 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 99.88 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 99.88 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 99.88 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 99.88 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 99.87 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 99.87 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 99.87 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 99.86 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 99.85 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 99.85 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.85 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.85 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 99.84 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.83 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 99.83 | |
| PRK15000 | 200 | peroxidase; Provisional | 99.83 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 99.83 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 99.83 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 99.83 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 99.83 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 99.82 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 99.81 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.81 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 99.81 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.81 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 99.81 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 99.8 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 99.8 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.8 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.79 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 99.79 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 99.78 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.75 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.75 | |
| COG0450 | 194 | AhpC Peroxiredoxin [Posttranslational modification | 99.72 | |
| cd03013 | 155 | PRX5_like Peroxiredoxin (PRX) family, PRX5-like su | 99.7 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 99.61 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.56 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.56 | |
| COG0386 | 162 | BtuE Glutathione peroxidase [Posttranslational mod | 99.48 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.45 | |
| KOG0855 | 211 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.39 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.35 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.32 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.32 | |
| KOG0852 | 196 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.31 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.3 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.29 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.29 | |
| KOG1651 | 171 | consensus Glutathione peroxidase [Posttranslationa | 99.26 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.25 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.24 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.22 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.21 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.2 | |
| COG2077 | 158 | Tpx Peroxiredoxin [Posttranslational modification, | 99.18 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.17 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.16 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.16 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.14 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.11 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.11 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.07 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.07 | |
| KOG0854 | 224 | consensus Alkyl hydroperoxide reductase, thiol spe | 99.06 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.06 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.05 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.05 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.04 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.03 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.0 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.0 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 98.99 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 98.97 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 98.96 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 98.94 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.92 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.9 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 98.9 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 98.89 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 98.88 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 98.86 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 98.86 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 98.83 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.83 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 98.79 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 98.79 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 98.79 | |
| PF00255 | 108 | GSHPx: Glutathione peroxidase; InterPro: IPR000889 | 98.76 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.75 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 98.74 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 98.72 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 98.72 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 98.7 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.69 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 98.67 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.66 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 98.65 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.64 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 98.64 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 98.63 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 98.62 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 98.55 | |
| PF00837 | 237 | T4_deiodinase: Iodothyronine deiodinase; InterPro: | 98.52 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 98.51 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.49 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 98.43 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 98.39 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.35 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.34 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.32 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 98.31 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.3 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 98.24 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 98.2 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 98.18 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.16 | |
| PHA02125 | 75 | thioredoxin-like protein | 98.07 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.06 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.04 | |
| smart00594 | 122 | UAS UAS domain. | 98.03 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 97.96 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 97.86 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 97.83 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 97.79 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 97.75 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.58 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 97.57 | |
| COG0678 | 165 | AHP1 Peroxiredoxin [Posttranslational modification | 97.52 | |
| PF04592 | 238 | SelP_N: Selenoprotein P, N terminal region; InterP | 97.42 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 97.4 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.38 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 97.35 | |
| PF05176 | 252 | ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th | 97.34 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 97.29 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 97.27 | |
| PF05988 | 211 | DUF899: Bacterial protein of unknown function (DUF | 97.25 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 97.24 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.23 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.19 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.17 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.16 | |
| PF09695 | 160 | YtfJ_HI0045: Bacterial protein of unknown function | 97.11 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 96.92 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 96.83 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 96.82 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 96.74 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 96.65 | |
| COG4312 | 247 | Uncharacterized protein conserved in bacteria [Fun | 96.4 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 96.3 | |
| KOG0541 | 171 | consensus Alkyl hydroperoxide reductase/peroxiredo | 96.26 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 96.15 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 96.11 | |
| PF13778 | 118 | DUF4174: Domain of unknown function (DUF4174) | 95.98 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 95.79 | |
| PF13911 | 115 | AhpC-TSA_2: AhpC/TSA antioxidant enzyme | 95.23 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 94.83 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 94.79 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 94.7 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 94.48 | |
| cd02972 | 98 | DsbA_family DsbA family; consists of DsbA and DsbA | 93.86 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 93.84 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 93.78 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 93.63 | |
| COG4545 | 85 | Glutaredoxin-related protein [Posttranslational mo | 93.55 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 92.52 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 92.25 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 92.12 | |
| COG1651 | 244 | DsbG Protein-disulfide isomerase [Posttranslationa | 91.6 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 91.38 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 91.36 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 90.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 90.28 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 90.27 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 89.87 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 87.96 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 87.78 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 87.57 | |
| cd03032 | 115 | ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub | 86.8 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 86.47 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 85.83 | |
| cd02977 | 105 | ArsC_family Arsenate Reductase (ArsC) family; comp | 85.74 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 85.69 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 85.48 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 85.47 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 85.3 | |
| PRK01655 | 131 | spxA transcriptional regulator Spx; Reviewed | 84.97 | |
| cd03036 | 111 | ArsC_like Arsenate Reductase (ArsC) family, unknow | 84.56 | |
| TIGR00365 | 97 | monothiol glutaredoxin, Grx4 family. The gene for | 83.14 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 82.99 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 82.72 | |
| PRK12559 | 131 | transcriptional regulator Spx; Provisional | 81.97 | |
| PF06053 | 249 | DUF929: Domain of unknown function (DUF929); Inter | 81.86 | |
| KOG4498 | 197 | consensus Uncharacterized conserved protein [Funct | 81.7 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 80.5 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 80.44 | |
| TIGR01617 | 117 | arsC_related transcriptional regulator, Spx/MgsR f | 80.31 | |
| cd03028 | 90 | GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte | 80.01 |
| >KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=272.28 Aligned_cols=215 Identities=56% Similarity=1.055 Sum_probs=185.2
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHH---HhhcccchhhhHHHhhhhhhhccCCCCCCCCCCCCCeEEEcCCCCeeeccc
Q 020776 102 DTGKPIRGGPISWLSFLLLALTGAGI---IWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKD 178 (321)
Q Consensus 102 ~~~~~~r~~p~~~l~~~ll~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd 178 (321)
+..++.|.+|..|..+++++++++++ +.++..++....+.... . ....+|.++.+++|+|.|.+|+.++-.|
T Consensus 62 ~~~~~~r~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~e~~r~--~---~~~~~gk~~iGGpF~L~d~~Gk~~te~d 136 (280)
T KOG2792|consen 62 ESGKPGRPGPFSWRSLLATFALGLGLGGALAYLKKEKARLLEKERE--S---ANRTAGKPAIGGPFSLVDHDGKRVTEKD 136 (280)
T ss_pred ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h---hhhhcCCCccCCceEEEecCCCeecccc
Confidence 34455556888888777655544443 34444444433322222 1 2278899999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
|+|||+||||.+|+||+||++|+.+|.++.++++++.|..++.|+|++||++|+++.+++|+++|++....++|+.+++.
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk 216 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVK 216 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHcCceEee-cCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHHhC
Q 020776 259 NIARAYRVYYMK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321 (321)
Q Consensus 259 ~~a~~ygv~~~p-~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~kk 321 (321)
+++++|.|++.+ +.+++++|.|||+..+|||||+|+++.+|+.+.+.+++.+.|.+.+..+++
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y~~ 280 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASYRS 280 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhccC
Confidence 999999999998 556689999999999999999999999999999999999999999988764
|
|
| >COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=212.36 Aligned_cols=156 Identities=40% Similarity=0.791 Sum_probs=143.3
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH-
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK- 241 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~- 241 (321)
+|+++|.+|+.+++.+++||++||+|.+|+||.||+.++..|.++++++.+..+.++++|+||+||++|+++.+++|++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999844488999999999999999999999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCC-CCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED-SDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~-~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
.++..|..++++.+...+++++|+|.+.+....+ .+|.++|+..+||||++|+++..+....+++++.++|++++++
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 7788999999999999999999999985443333 5899999999999999999999987777789999999888763
|
|
| >PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=207.86 Aligned_cols=140 Identities=44% Similarity=0.857 Sum_probs=126.4
Q ss_pred CCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 161 GGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 161 ~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
.++|+|+|.+|+++++++++||++||+|.+|.||.+|+..+..|.++++++.++ +.++++|+||+||++|+++.+++|+
T Consensus 32 ~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 32 VPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp SST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred CCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCCCCCHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999987 7799999999999999999999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCC--CCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE--EDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~--~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.++.+|..++++.+...++++.|++.+..... .+.+|.++|+..+|||||+|+|+..|..
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 999999999999999999999999998876433 4567999999999999999999998854
|
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A .... |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=184.15 Aligned_cols=139 Identities=49% Similarity=0.940 Sum_probs=124.3
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
|+|++.|.+|+.+++++++||++||+||++||+++|..+++.|++++++++++...++.+|+|+.|+..|+++.+++|++
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~ 82 (142)
T cd02968 3 PDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAK 82 (142)
T ss_pred CceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999999999999999999977999999999999999876113589999999998899999999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++.+|+++..+.+....+++.||+...+.......+.+.|.+.+||||++|+|+++|.
T Consensus 83 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 83 AFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 99999999987766778999999999988754445577789999999999999999874
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=192.80 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=117.0
Q ss_pred CCCCCCCCCCCCeEEEcCC--CCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHD--GKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~--G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
...+|+++| +|++.|.+ |+.++++++ +||++||+||++||++ |+.++|.|+++.+ + ++.+|+|++|
T Consensus 38 ~~~~g~~~p--~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~-C~~e~p~l~~l~~----~---~~~vi~v~~~- 106 (185)
T PRK15412 38 SALIGKPVP--KFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSA----Q---GIRVVGMNYK- 106 (185)
T ss_pred hhhcCCCCC--CcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHH----c---CCEEEEEECC-
Confidence 356788888 99999998 477777765 7999999999999998 9999999988753 2 4667888876
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
|+.+.+++|+++++.+|+.+. .|....+.+.|++...|+ +||||++|+|++.+.|..+.+++
T Consensus 107 --~~~~~~~~~~~~~~~~~~~~~--~D~~~~~~~~~gv~~~P~--------------t~vid~~G~i~~~~~G~~~~~~l 168 (185)
T PRK15412 107 --DDRQKAISWLKELGNPYALSL--FDGDGMLGLDLGVYGAPE--------------TFLIDGNGIIRYRHAGDLNPRVW 168 (185)
T ss_pred --CCHHHHHHHHHHcCCCCceEE--EcCCccHHHhcCCCcCCe--------------EEEECCCceEEEEEecCCCHHHH
Confidence 557889999999999987532 455667888999988887 99999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 020776 309 ADGIIKEIKQY 319 (321)
Q Consensus 309 ~~~l~~~L~~~ 319 (321)
.+.|+.++++.
T Consensus 169 ~~~i~~~~~~~ 179 (185)
T PRK15412 169 ESEIKPLWEKY 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=184.22 Aligned_cols=153 Identities=9% Similarity=0.093 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----C
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----P 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p 228 (321)
...+..+| +|+++|.+|+.+++++++||+|||+||++||++ |..++|.|++++++|+++ ++.+|+|++| +
T Consensus 13 ~~~~~~~p--df~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~-C~~e~p~L~~l~~~~~~~---g~~vvgv~~~~~~~~ 86 (199)
T PTZ00056 13 DELRKSIY--DYTVKTLEGTTVPMSSLKNKVLMITNSASKCGL-TKKHVDQMNRLHSVFNPL---GLEILAFPTSQFLNQ 86 (199)
T ss_pred hhcCCCCC--ceEEECCCCCEEeHHHhCCCEEEEEEECCCCCC-hHHHHHHHHHHHHHHhcC---ceEEEEecchhccCC
Confidence 34455666 999999999999999999999999999999998 999999999999999876 5788899875 3
Q ss_pred CCCCHHHHHHHHHHhCCCceeecC---ChHHHHHHH--------HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTG---SPDEIRNIA--------RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~---~~d~~~~~a--------~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
+.|+++.+++|+++++++|+++.. +.+....+. ..|++...+ ..+.+.+++||||++|+|++
T Consensus 87 e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~-------~~i~~~~~tflID~~G~iv~ 159 (199)
T PTZ00056 87 EFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTL-------KAIGWNFGKFLVNKSGNVVA 159 (199)
T ss_pred CCCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccC-------CccCCCCEEEEECCCCcEEE
Confidence 457889999999999999998731 001111222 223322111 12334457999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHHH
Q 020776 298 FFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 298 ~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++.+..+++++.+.|.+++++
T Consensus 160 ~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 160 YFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred EeCCCCCHHHHHHHHHHHHHH
Confidence 999988998998888888864
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=177.24 Aligned_cols=137 Identities=26% Similarity=0.333 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|+.+| +|++.+.+|+.+++++++||+++|+||++||++ |..+++.|+++++++.++ ++.+|+|+.|
T Consensus 33 ~~~~~g~~~p--~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~-C~~~~~~l~~~~~~~~~~---~~~vi~i~~d--- 103 (173)
T PRK03147 33 EKVQVGKEAP--NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP-CEKEMPYMNELYPKYKEK---GVEIIAVNVD--- 103 (173)
T ss_pred cccCCCCCCC--CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC---CeEEEEEEcC---
Confidence 4577888888 999999999999999999999999999999997 999999999999999865 5888899987
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
++.+.+++|+++++.+|+.+ .|....+.+.|++...|+ +|+||++|+|+..+.|..+.+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~g~i~~~~~g~~~~~~l~~ 166 (173)
T PRK03147 104 ETELAVKNFVNRYGLTFPVA---IDKGRQVIDAYGVGPLPT--------------TFLIDKDGKVVKVITGEMTEEQLEE 166 (173)
T ss_pred CCHHHHHHHHHHhCCCceEE---ECCcchHHHHcCCCCcCe--------------EEEECCCCcEEEEEeCCCCHHHHHH
Confidence 45689999999999999988 566678899999988776 9999999999998888887766555
Q ss_pred HHH
Q 020776 311 GII 313 (321)
Q Consensus 311 ~l~ 313 (321)
.+.
T Consensus 167 ~l~ 169 (173)
T PRK03147 167 YLE 169 (173)
T ss_pred HHH
Confidence 444
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=190.52 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP---- 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp---- 228 (321)
..+|+.+| +|+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|.
T Consensus 73 ~~~g~~aP--dF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~-c~~e~p~L~~L~~~~~~~---Gv~VIgV~~d~~~~~ 146 (236)
T PLN02399 73 AATEKSVH--DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGL-TSSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQ 146 (236)
T ss_pred hhcCCCCC--ceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcc-hHHHHHHHHHHHHHHhcC---CcEEEEEeccccccc
Confidence 34677777 999999999999999999999999999999998 999999999999999876 57788888763
Q ss_pred CCCCHHHHHHHH-HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 229 ERDTVEQVREYV-KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 229 ~~Dt~e~l~~~~-~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+.++.+++++|+ ++++.+|+++.........+...|++....... -....+.+.|++||||++|+|++++.+..++++
T Consensus 147 e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~-~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~ 225 (236)
T PLN02399 147 EPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGG-FLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQ 225 (236)
T ss_pred CCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCC-ccCCccccCceEEEECCCCcEEEEECCCCCHHH
Confidence 236778999998 688999987631111111334444321100000 000123345679999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020776 308 LADGIIKEIK 317 (321)
Q Consensus 308 l~~~l~~~L~ 317 (321)
+++.|+++|+
T Consensus 226 le~~I~~lL~ 235 (236)
T PLN02399 226 IEKDIQKLLA 235 (236)
T ss_pred HHHHHHHHhc
Confidence 9898888875
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=177.33 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=109.2
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVR 237 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~ 237 (321)
|+|+++|.+|+++++++++||+|||+||++||+ |..++|.|++++++|+++ ++.+|+|++|. +.|+++.++
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~--C~~e~p~l~~l~~~~~~~---~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG--FTPQYEGLEALYEKYKDR---GLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC--chHHHHHHHHHHHHhcCC---CEEEEEeccCccccCCCCCHHHHH
Confidence 499999999999999999999999999999998 999999999999999865 68889998764 346789999
Q ss_pred HHHHH-hCCCceeecCChHHHHH-HHHHcCc--eEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 238 EYVKE-FHPKLIGLTGSPDEIRN-IARAYRV--YYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 238 ~~~~~-~~~~~~~l~~~~d~~~~-~a~~ygv--~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
+|+++ ++++|+++.. .|.... ..+.|++ ...|+.. .+.+.+.+++||||++|+|++++.|..+.+++.+.
T Consensus 78 ~f~~~~~~~~fp~~~d-~d~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 78 EFCETNYGVTFPMFAK-IDVNGENAHPLYKYLKEEAPGLL---GKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHHHhcCCCceeeee-EeccCCCCChHHHHHHhcCCCCC---CCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 99997 7999998832 111111 3444542 3333200 12234566799999999999999999888766543
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-23 Score=173.69 Aligned_cols=133 Identities=28% Similarity=0.353 Sum_probs=107.7
Q ss_pred CCCCCCCCCCeEEEc--CCCCeeeccccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 154 SVGKAAIGGPFKLIN--HDGKNVTEKDFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d--~~G~~vsLsd~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
++|+++| +|++++ .+|+++++++++||++||+||++ |||+ |..++|.|++++++|+++ ++.+|+|+.+.+
T Consensus 1 k~G~~~P--~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~-C~~~~p~l~~l~~~~~~~---~v~~v~v~~~~~- 73 (146)
T PF08534_consen 1 KVGDKAP--DFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPP-CRKELPYLNELQEKYKDK---GVDVVGVSSDDD- 73 (146)
T ss_dssp STTSB----CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT---TCEEEEEEESSS-
T ss_pred CCCCCCC--CeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCc-chhhhhhHHhhhhhhccC---ceEEEEecccCC-
Confidence 4788998 999965 99999999999999999999999 9998 999999999999999876 577777887642
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
..+.+|+++++.+|+++ .|....++++|++........+ ...|.+||||++|+|++.+.+..+
T Consensus 74 ---~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~~~~~~~~~~-----~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 ---PPVREFLKKYGINFPVL---SDPDGALAKALGVTIMEDPGNG-----FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ---HHHHHHHHHTTTTSEEE---EETTSHHHHHTTCEEECCTTTT-----SSSSEEEEEETTSBEEEEEESSBT
T ss_pred ---HHHHHHHHhhCCCceEE---echHHHHHHHhCCccccccccC-----CeecEEEEEECCCEEEEEEeCCCC
Confidence 23999999999999998 6777889999998833211000 133459999999999999866665
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=177.67 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=113.1
Q ss_pred CCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC----CCCHHHH
Q 020776 161 GGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE----RDTVEQV 236 (321)
Q Consensus 161 ~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~----~Dt~e~l 236 (321)
.|+|+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|+.|+. .|+.+++
T Consensus 9 ~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~-c~~e~~~l~~l~~~~~~~---g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 9 IYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGL-TDSNYKELNVLYEKYKEQ---GFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCC-hHHHHHHHHHHHHHHhhC---CcEEEEecccccccCCCCCHHHH
Confidence 34999999999999999999999999999999998 999999999999999976 688899998742 2556666
Q ss_pred HHH-HHHhCCCceeecCChHHH-HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 237 REY-VKEFHPKLIGLTGSPDEI-RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 237 ~~~-~~~~~~~~~~l~~~~d~~-~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
.++ +++++++|+++.. .|.. ....+.|++...... +.....+...|++||||++|+|++++.+..+.+++.+.|.+
T Consensus 85 ~~~~~~~~~~~fpvl~~-~d~~g~~~~~~~~~~~~~~~-~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~ 162 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDK-VDVNGKNTAPLYKYLKAEKG-GLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQN 162 (167)
T ss_pred HHHHHHccCCCCceEeE-EeeCCCCCCHHHHHHHhhCC-CCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 555 6899999998731 0111 133344432110000 00000122345699999999999999999999999999988
Q ss_pred HHHH
Q 020776 315 EIKQ 318 (321)
Q Consensus 315 ~L~~ 318 (321)
+|++
T Consensus 163 ~l~~ 166 (167)
T PLN02412 163 LLGQ 166 (167)
T ss_pred HHhh
Confidence 8865
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=175.69 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=98.1
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeecc--ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEK--DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLs--d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
..+..+|+++| +|+++|.+|+.++++ +++||+++|+||++|||+ |+.++|.++++++++ + +.+++|+.
T Consensus 43 ~~~~~vG~~aP--~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~-C~~~lp~l~~~~~~~----~--~~vv~Is~- 112 (189)
T TIGR02661 43 DHGPDVGDAAP--IFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPV-CDKLFPIIKSIARAE----E--TDVVMISD- 112 (189)
T ss_pred ccCCCCCCcCC--CcEecCCCCCEEeccchhcCCCEEEEEEECCCChh-HHHHHHHHHHHHHhc----C--CcEEEEeC-
Confidence 34678999988 999999999999994 579999999999999997 999999999987643 2 34566673
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
|+++++++|+++++++++.+. ...++.+.|++...|. +|+||++|+|++.
T Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~y~v~~~P~--------------~~lID~~G~I~~~ 162 (189)
T TIGR02661 113 ---GTPAEHRRFLKDHELGGERYV----VSAEIGMAFQVGKIPY--------------GVLLDQDGKIRAK 162 (189)
T ss_pred ---CCHHHHHHHHHhcCCCcceee----chhHHHHhccCCccce--------------EEEECCCCeEEEc
Confidence 457899999999998875542 2367888999988776 8999999999986
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=176.64 Aligned_cols=138 Identities=15% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCeEEEcCCCC--eeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGK--NVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~--~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
....+|+++| +|+++|.+|+ .++++++ +||+++|+||++||++ |+.++|.++++++ + ++.+|+|+.|
T Consensus 32 ~~~~vG~~ap--~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~----~---~~~vi~V~~~ 101 (173)
T TIGR00385 32 PSALIGKPVP--AFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPP-CRAEHPYLNELAK----D---GLPIVGVDYK 101 (173)
T ss_pred cchhcCCCCC--CccccccCCCCcccCHHHhcCCCEEEEEEECCcCHH-HHHHHHHHHHHHH----c---CCEEEEEECC
Confidence 3457888888 9999999997 4555675 7999999999999998 9999999988753 2 3677888875
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+..+..++|+++++.+|+.+. .|....+++.|++...|+ +|+||++|+|++.+.|..+.++
T Consensus 102 ---~~~~~~~~~~~~~~~~f~~v~--~D~~~~~~~~~~v~~~P~--------------~~~id~~G~i~~~~~G~~~~~~ 162 (173)
T TIGR00385 102 ---DQSQNALKFLKELGNPYQAIL--IDPNGKLGLDLGVYGAPE--------------TFLVDGNGVILYRHAGPLNNEV 162 (173)
T ss_pred ---CChHHHHHHHHHcCCCCceEE--ECCCCchHHhcCCeeCCe--------------EEEEcCCceEEEEEeccCCHHH
Confidence 345777899999999887432 355577899999988887 9999999999999989999999
Q ss_pred HHHHHHHHHH
Q 020776 308 LADGIIKEIK 317 (321)
Q Consensus 308 l~~~l~~~L~ 317 (321)
+.+.+.+.++
T Consensus 163 l~~~l~~~~~ 172 (173)
T TIGR00385 163 WTEGFLPAME 172 (173)
T ss_pred HHHHHHHHhh
Confidence 9888888775
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=167.66 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...+|+++| +|+|++.+|+.++|++++||+|||+|+. .++| .|..|+-.+++.+.+|++. +.++|+||.
T Consensus 3 ~l~~G~~aP--dF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~Tp-gCT~Ea~~Frd~~~ef~~~---~a~V~GIS~---- 72 (157)
T COG1225 3 MLKVGDKAP--DFELPDQDGETVSLSDLRGKPVVLYFYPKDFTP-GCTTEACDFRDLLEEFEKL---GAVVLGISP---- 72 (157)
T ss_pred cCCCCCcCC--CeEeecCCCCEEehHHhcCCcEEEEECCCCCCC-cchHHHHHHHHHHHHHHhC---CCEEEEEeC----
Confidence 467899999 9999999999999999999999999994 5566 5999999999999999865 788899995
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
|+++..++|+++++++|+.+ +|..++++++||+.......+ ..| ....+.+||||++|+|++.+ .........+
T Consensus 73 Ds~~~~~~F~~k~~L~f~LL---SD~~~~v~~~ygv~~~k~~~g-k~~-~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~ 146 (157)
T COG1225 73 DSPKSHKKFAEKHGLTFPLL---SDEDGEVAEAYGVWGEKKMYG-KEY-MGIERSTFVIDPDGKIRYVW-RKVKVKGHAD 146 (157)
T ss_pred CCHHHHHHHHHHhCCCceee---ECCcHHHHHHhCcccccccCc-ccc-ccccceEEEECCCCeEEEEe-cCCCCcccHH
Confidence 56899999999999999999 888999999999987654211 111 24567899999999999998 6777788888
Q ss_pred HHHHHHHHHh
Q 020776 311 GIIKEIKQYK 320 (321)
Q Consensus 311 ~l~~~L~~~k 320 (321)
++++.|+++.
T Consensus 147 ~vl~~l~~l~ 156 (157)
T COG1225 147 EVLAALKKLA 156 (157)
T ss_pred HHHHHHHHhc
Confidence 8888888764
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-22 Score=169.38 Aligned_cols=149 Identities=23% Similarity=0.320 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...+|+++| +|+++|.+|+.+++++++||++||+||++| || .|..+++.|++++++++++ ++++|+|+.|
T Consensus 3 ~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p-~C~~~~~~l~~~~~~~~~~---~v~vi~Is~d--- 73 (154)
T PRK09437 3 PLKAGDIAP--KFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTP-GCTVQACGLRDNMDELKKA---GVVVLGISTD--- 73 (154)
T ss_pred cCCCCCcCC--CcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCC-chHHHHHHHHHHHHHHHHC---CCEEEEEcCC---
Confidence 456788888 999999999999999999999999999875 66 4999999999999999876 5788889865
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+++.+++|+++++.+|+++ .|..+.++++||+.+.+.... ..|...| +++||||++|+|++.+.+....+ ..+
T Consensus 74 -~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~~-~~~~~~~-~~~~lid~~G~i~~~~~g~~~~~-~~~ 146 (154)
T PRK09437 74 -KPEKLSRFAEKELLNFTLL---SDEDHQVAEQFGVWGEKKFMG-KTYDGIH-RISFLIDADGKIEHVFDKFKTSN-HHD 146 (154)
T ss_pred -CHHHHHHHHHHhCCCCeEE---ECCCchHHHHhCCCccccccc-ccccCcc-eEEEEECCCCEEEEEEcCCCcch-hHH
Confidence 5699999999999999998 455678999999987654221 1232223 46899999999999987644333 333
Q ss_pred HHHHHH
Q 020776 311 GIIKEI 316 (321)
Q Consensus 311 ~l~~~L 316 (321)
++++.+
T Consensus 147 ~~~~~~ 152 (154)
T PRK09437 147 VVLDYL 152 (154)
T ss_pred HHHHHH
Confidence 344433
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=163.55 Aligned_cols=123 Identities=28% Similarity=0.404 Sum_probs=107.9
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
||+++| +|++++.+|+.+++++++||++||+||++ ||+. |..+++.|++++++|+++ ++.+|+|+.| +.
T Consensus 1 vG~~~P--~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~-c~~~l~~l~~~~~~~~~~---~~~vi~is~d----~~ 70 (124)
T PF00578_consen 1 VGDKAP--DFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPF-CQAELPELNELYKKYKDK---GVQVIGISTD----DP 70 (124)
T ss_dssp TTSBGG--CEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT---TEEEEEEESS----SH
T ss_pred CcCCCC--CcEeECCCCCEEEHHHHCCCcEEEEEeCccCccc-cccchhHHHHHhhhhccc---eEEeeecccc----cc
Confidence 688999 99999999999999999999999999999 9997 999999999999999976 7888999965 46
Q ss_pred HHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 234 EQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 234 e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+.+++|.++++.+|+++ .|....+++.|++.... .....|.+||||++|+|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~~~~~--------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 71 EEIKQFLEEYGLPFPVL---SDPDGELAKAFGIEDEK--------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHTCSSEEE---EETTSHHHHHTTCEETT--------TSEESEEEEEEETTSBEEEE
T ss_pred cchhhhhhhhccccccc---cCcchHHHHHcCCcccc--------CCceEeEEEEECCCCEEEeC
Confidence 89999999999999999 77788999999998322 01233459999999999974
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-22 Score=170.51 Aligned_cols=140 Identities=14% Similarity=0.229 Sum_probs=107.5
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt~e~l~~ 238 (321)
+|+++|.+|+++++++++||++||+||++|||+ |..++|.|++++++|+++ ++.+|+|+.+ .+.|+++.+++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~-c~~~~~~l~~l~~~~~~~---~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGF-TDQNYRALQELHRELGPS---HFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCc-hhhhHHHHHHHHHHHhhC---CeEEEEEeccccccCCCCCHHHHHH
Confidence 799999999999999999999999999999998 999999999999999876 6888888852 12477899999
Q ss_pred HHHH-hCCCceeecCC--hHHHHHHHHHcCce---EeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 239 YVKE-FHPKLIGLTGS--PDEIRNIARAYRVY---YMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 239 ~~~~-~~~~~~~l~~~--~d~~~~~a~~ygv~---~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
|+++ ++++|+.+... .+.....+..|.+. ..|+ ...++||||++|+|++.+.+..+.+++...|
T Consensus 80 f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~----------~~~~tflID~~G~v~~~~~g~~~~~~l~~~i 149 (153)
T TIGR02540 80 FARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPR----------WNFWKYLVNPEGQVVKFWRPEEPVEEIRPEI 149 (153)
T ss_pred HHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCC----------CccEEEEEcCCCcEEEEECCCCCHHHHHHHH
Confidence 9986 89999887310 01111111122221 1121 1234899999999999999999998888887
Q ss_pred HHHH
Q 020776 313 IKEI 316 (321)
Q Consensus 313 ~~~L 316 (321)
++++
T Consensus 150 ~~l~ 153 (153)
T TIGR02540 150 TALV 153 (153)
T ss_pred HHhC
Confidence 7653
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=171.33 Aligned_cols=139 Identities=23% Similarity=0.280 Sum_probs=117.7
Q ss_pred CCCCCCCCeEEEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC----
Q 020776 156 GKAAIGGPFKLINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER---- 230 (321)
Q Consensus 156 G~~aP~p~f~l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~---- 230 (321)
|+++| +|++.+.+|+.++++++ +||++||+||++|||. |..+++.|++++++|+++ ++.+|+|++|+..
T Consensus 1 g~~~p--~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~-c~~~~~~l~~l~~~~~~~---~v~~v~is~d~~~~~~~ 74 (171)
T cd02969 1 GSPAP--DFSLPDTDGKTYSLADFADGKALVVMFICNHCPY-VKAIEDRLNRLAKEYGAK---GVAVVAINSNDIEAYPE 74 (171)
T ss_pred CCcCC--CccccCCCCCEEeHHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHHhhC---CeEEEEEecCccccccc
Confidence 45666 99999999999999998 8999999999999997 999999999999999865 6888999998753
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC---------C
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG---------K 301 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~---------~ 301 (321)
|+++.+++|+++++.+|+++ .|....+++.|++...|. +||||++|+|++... .
T Consensus 75 d~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~v~~~P~--------------~~lid~~G~v~~~~~~~~~~~~~~~ 137 (171)
T cd02969 75 DSPENMKAKAKEHGYPFPYL---LDETQEVAKAYGAACTPD--------------FFLFDPDGKLVYRGRIDDSRPGNDP 137 (171)
T ss_pred cCHHHHHHHHHHCCCCceEE---ECCchHHHHHcCCCcCCc--------------EEEECCCCeEEEeecccCCcccccc
Confidence 78999999999999999999 566678899999987776 999999999998742 1
Q ss_pred CCChhHHHHHHHHHHH
Q 020776 302 NNDVNSLADGIIKEIK 317 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~ 317 (321)
..+.+++.+.|..++.
T Consensus 138 ~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 138 PVTGRDLRAALDALLA 153 (171)
T ss_pred cccHHHHHHHHHHHHc
Confidence 2344566666666654
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=169.84 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=108.5
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.....+|+++| +|++.|.+|+.+++++++||++||+||++| |++ |..|++.|+++++++. ++.+|+||.|
T Consensus 15 ~~~~~~G~~~P--~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~-C~~e~~~l~~~~~~~~-----~~~vv~vs~D- 85 (167)
T PRK00522 15 GSLPQVGDKAP--DFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGV-CATSVRKFNQEAAELD-----NTVVLCISAD- 85 (167)
T ss_pred CCCCCCCCCCC--CeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCc-cHHHHHHHHHHHHHcC-----CcEEEEEeCC-
Confidence 34567899999 999999999999999999999999999999 887 9999999999998883 4778889865
Q ss_pred CCCCHHHHHHHHHHhCCC-ceeecCChH-HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 229 ERDTVEQVREYVKEFHPK-LIGLTGSPD-EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~-~~~l~~~~d-~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++..++|++++++. ++.+ .| ..+.+++.||+...|.... -...+++||||++|+|++.+.
T Consensus 86 ---~~~~~~~f~~~~~~~~~~~l---sD~~~~~~~~~~gv~~~~~~~~-----g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 86 ---LPFAQKRFCGAEGLENVITL---SDFRDHSFGKAYGVAIAEGPLK-----GLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred ---CHHHHHHHHHhCCCCCceEe---ecCCccHHHHHhCCeecccccC-----CceeeEEEEECCCCeEEEEEE
Confidence 467889999999986 6777 55 4568999999987662110 113467999999999999874
|
|
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-22 Score=171.47 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=104.2
Q ss_pred CCCCCCCCCeEEEcCCC----CeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 155 VGKAAIGGPFKLINHDG----KNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G----~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
+|+++| +|++++.+| +.+++++++||++||+|| ++||+. |..+++.|++++++|.++ ++.+|+||+|+.
T Consensus 1 vG~~aP--~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~-C~~~l~~l~~~~~~~~~~---~v~vv~Is~d~~ 74 (173)
T cd03015 1 VGKKAP--DFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFV-CPTEIIAFSDRYEEFKKL---NAEVLGVSTDSH 74 (173)
T ss_pred CCCcCC--CCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEecCCH
Confidence 578888 999999887 799999999999999999 899997 999999999999999876 577888998753
Q ss_pred CCCHHHHHHHHHH-------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 230 RDTVEQVREYVKE-------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 230 ~Dt~e~l~~~~~~-------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+..+.|.+. .+++|+++ .|...++++.||+...+.. ...|++||||++|+|++.+.+.
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~f~~l---~D~~~~~~~~~gv~~~~~~--------~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 75 ----FSHLAWRNTPRKEGGLGKINFPLL---ADPKKKISRDYGVLDEEEG--------VALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred ----HHHHHHHHhhhhhCCccCcceeEE---ECCchhHHHHhCCccccCC--------ceeeEEEEECCCCeEEEEEecC
Confidence 455566665 35788888 6778899999998754310 1235699999999999998543
Q ss_pred C
Q 020776 303 N 303 (321)
Q Consensus 303 ~ 303 (321)
.
T Consensus 140 ~ 140 (173)
T cd03015 140 L 140 (173)
T ss_pred C
Confidence 3
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=164.65 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=114.1
Q ss_pred CCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 154 SVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
.+|+.+| +|++++.+|+.+++++++| |++||+|| ++||+. |..+++.|++++++++++ ++.+|+|+.|
T Consensus 2 ~~G~~~p--~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~v~vi~vs~d---- 71 (149)
T cd03018 2 EVGDKAP--DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAA---GAEVLGISVD---- 71 (149)
T ss_pred CCCCcCC--CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhC---CCEEEEecCC----
Confidence 5788888 9999999999999999999 99999888 999997 999999999999999866 5778899965
Q ss_pred CHHHHHHHHHHhCCCceeecCChHHH--HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 232 TVEQVREYVKEFHPKLIGLTGSPDEI--RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 232 t~e~l~~~~~~~~~~~~~l~~~~d~~--~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
+++.+++|+++++.+|+++ .|.. .++++.|++...+. ..+.+++||||++|+|++.+.+........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~g~~~~~~--------~~~~~~~~lid~~G~v~~~~~~~~~~~~~~ 140 (149)
T cd03018 72 SPFSLRAWAEENGLTFPLL---SDFWPHGEVAKAYGVFDEDL--------GVAERAVFVIDRDGIIRYAWVSDDGEPRDL 140 (149)
T ss_pred CHHHHHHHHHhcCCCceEe---cCCCchhHHHHHhCCccccC--------CCccceEEEECCCCEEEEEEecCCcccccc
Confidence 4688999999999999988 4433 78999999876441 123456999999999999976655222223
Q ss_pred HHHHHHH
Q 020776 310 DGIIKEI 316 (321)
Q Consensus 310 ~~l~~~L 316 (321)
.++.+.|
T Consensus 141 ~~~~~~~ 147 (149)
T cd03018 141 PDYDEAL 147 (149)
T ss_pred hhHHHHh
Confidence 3344433
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=171.77 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=108.3
Q ss_pred CCCCCCCeEEEcCCCCeeeccccCCCeE-EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCC
Q 020776 157 KAAIGGPFKLINHDGKNVTEKDFLGKWT-VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERD 231 (321)
Q Consensus 157 ~~aP~p~f~l~d~~G~~vsLsd~kGK~v-LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~D 231 (321)
..+| +|+++|.+|+.+++++++||++ |+.||++|||+ |..|+|.|++++++|+++ ++.+|+|++|. +.+
T Consensus 18 ~~~p--~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~-C~~e~p~l~~l~~~~~~~---gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 18 KSFF--EFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGL-TSDHYTQLVELYKQYKSQ---GLEILAFPCNQFMEQEPW 91 (183)
T ss_pred Cccc--ceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCc-hHHHHHHHHHHHHHHhhC---CcEEEEEecccccccCCC
Confidence 3455 9999999999999999999965 55669999998 999999999999999876 57888888652 334
Q ss_pred CHHHHHHHHH-HhCCCceeecC---ChHHHHHHH----HH--------cCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 232 TVEQVREYVK-EFHPKLIGLTG---SPDEIRNIA----RA--------YRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 232 t~e~l~~~~~-~~~~~~~~l~~---~~d~~~~~a----~~--------ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
+.+.+.+|.+ +++++|+++.. .......+. .+ +++..+| +..++||||++|+|
T Consensus 92 ~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP-----------~~~~tflID~~G~I 160 (183)
T PTZ00256 92 DEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIP-----------WNFAKFLIDGQGKV 160 (183)
T ss_pred CHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccC-----------cceEEEEECCCCCE
Confidence 5688999975 78999987721 000111122 11 1232333 23358999999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHH
Q 020776 296 VKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 296 v~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++++.+..+.+.+.+.|.++++
T Consensus 161 v~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 161 VKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred EEEECCCCCHHHHHHHHHHHhc
Confidence 9999999999988888888875
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=162.15 Aligned_cols=133 Identities=25% Similarity=0.367 Sum_probs=110.7
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|+++|.+|+.+++++++||++||+|| ++|||. |..+++.|+++++++.++ ++.+|+|++| +++.+++|+
T Consensus 4 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vv~is~d----~~~~~~~~~ 75 (140)
T cd03017 4 PDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPG-CTKEACDFRDLYEEFKAL---GAVVIGVSPD----SVESHAKFA 75 (140)
T ss_pred CCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHHC---CCEEEEEcCC----CHHHHHHHH
Confidence 4999999999999999999999999999 588996 999999999999999876 5778888864 568999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
++++.+|+++ .|....+++.||+...+.++ . ....|.+||||++|+|++.+.+....+.+.+
T Consensus 76 ~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~----~-~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 76 EKYGLPFPLL---SDPDGKLAKAYGVWGEKKKK----Y-MGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred HHhCCCceEE---ECCccHHHHHhCCccccccc----c-CCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 9999999988 56667899999998875311 0 1234679999999999999877775554444
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=170.47 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=113.0
Q ss_pred CCCCCCCCCCeEEEc-CCCC--eeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLIN-HDGK--NVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d-~~G~--~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.+|+++| +|++.+ .+|+ .+++++++||++||+|| ++||+. |..+++.|++++++|+++ ++.+|+||.|+
T Consensus 3 ~~G~~aP--~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~-C~~el~~l~~~~~~~~~~---gv~vi~VS~D~- 75 (187)
T TIGR03137 3 LINTEIK--PFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFV-CPTELEDLADKYAELKKL---GVEVYSVSTDT- 75 (187)
T ss_pred ccCCcCC--CcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCc-CHHHHHHHHHHHHHHHhc---CCcEEEEeCCC-
Confidence 5788898 999998 5776 68889999999999999 999996 999999999999999876 57788999764
Q ss_pred CCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 230 RDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
++..++|.+.. +++|+++ .|....+++.||+..... -.+.|++||||++|+|++.+......
T Consensus 76 ---~~~~~~~~~~~~~~~~l~fpll---sD~~~~~a~~~gv~~~~~--------g~~~p~tfiID~~G~I~~~~~~~~~~ 141 (187)
T TIGR03137 76 ---HFVHKAWHDTSEAIGKITYPML---GDPTGVLTRNFGVLIEEA--------GLADRGTFVIDPEGVIQAVEITDNGI 141 (187)
T ss_pred ---HHHHHHHHhhhhhccCcceeEE---ECCccHHHHHhCCcccCC--------CceeeEEEEECCCCEEEEEEEeCCCC
Confidence 46677776654 5778888 667789999999974321 01346799999999999987544444
Q ss_pred hHHHHHHHHHHHHH
Q 020776 306 NSLADGIIKEIKQY 319 (321)
Q Consensus 306 ~~l~~~l~~~L~~~ 319 (321)
+...+++.+.|+++
T Consensus 142 ~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 142 GRDASELLRKIKAA 155 (187)
T ss_pred CCCHHHHHHHHHHh
Confidence 44555666655544
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-21 Score=170.80 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
..+|+.+| +|++.+.+| .+++++++||++|| +||++|||. |..|++.|++++++|+++ ++.+|+||+|....
T Consensus 2 ~~vG~~aP--~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~-C~~El~~l~~~~~~f~~~---~~~vi~vS~D~~~~ 74 (202)
T PRK13190 2 VKLGQKAP--DFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPV-CTTEFIAFSRRYEDFKKL---GVELVGLSVDSIYS 74 (202)
T ss_pred CCCCCCCC--CcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEeCCCHHH
Confidence 46888998 999999888 79999999998876 689999996 999999999999999876 57788999874322
Q ss_pred CHHHHHHHHHHhC--CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 232 TVEQVREYVKEFH--PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 232 t~e~l~~~~~~~~--~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
..+.++++.++++ ++|+++ .|..+.++++||+..... + ...|.+||||++|+|++............
T Consensus 75 ~~~w~~~~~~~~g~~~~fPll---~D~~~~ia~~ygv~~~~~---g-----~~~p~~fiId~~G~I~~~~~~~~~~gr~~ 143 (202)
T PRK13190 75 HIAWLRDIEERFGIKIPFPVI---ADIDKELAREYNLIDENS---G-----ATVRGVFIIDPNQIVRWMIYYPAETGRNI 143 (202)
T ss_pred HHHHHHhHHHhcCCCceEEEE---ECCChHHHHHcCCccccC---C-----cEEeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 2233444555565 478888 677899999999853211 0 12467999999999998753322222234
Q ss_pred HHHHHHHHHH
Q 020776 310 DGIIKEIKQY 319 (321)
Q Consensus 310 ~~l~~~L~~~ 319 (321)
+++.+.|+++
T Consensus 144 ~ellr~l~~l 153 (202)
T PRK13190 144 DEIIRITKAL 153 (202)
T ss_pred HHHHHHHHHh
Confidence 4444444433
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=158.68 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=102.8
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
+|+++| +|++++.+|+.+++++++||++||+||++| |++ |..+++.|++++++++ ++.+|+|++| ++
T Consensus 2 ~G~~aP--~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~~-----~~~vi~Is~d----~~ 69 (143)
T cd03014 2 VGDKAP--DFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPV-CATQTKRFNKEAAKLD-----NTVVLTISAD----LP 69 (143)
T ss_pred CCCCCC--CcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCc-CHHHHHHHHHHHHhcC-----CCEEEEEECC----CH
Confidence 688888 999999999999999999999999999999 576 9999999999999873 4778889865 46
Q ss_pred HHHHHHHHHhCC-CceeecCChHHH-HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 234 EQVREYVKEFHP-KLIGLTGSPDEI-RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 234 e~l~~~~~~~~~-~~~~l~~~~d~~-~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.+++|.++++. +++.+ .|.. ..++++||+..... -...|++||||++|+|++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~gv~~~~~--------~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 70 FAQKRWCGAEGVDNVTTL---SDFRDHSFGKAYGVLIKDL--------GLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred HHHHHHHHhcCCCCceEe---ecCcccHHHHHhCCeeccC--------CccceEEEEEcCCCeEEEEEEC
Confidence 788999999985 78877 5554 78999999965211 0124669999999999998754
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-21 Score=157.96 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCeEEEcCCC--CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 020776 162 GPFKLINHDG--KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 162 p~f~l~d~~G--~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
|+|++++.+| +.+++++++||++||+||++||++ |..++|.|+++.+++ ++.+|+|+.| ++.+.+++|
T Consensus 4 p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~-C~~~~~~l~~l~~~~------~~~vv~v~~~---~~~~~~~~~ 73 (127)
T cd03010 4 PAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAP-CREEHPVLMALARQG------RVPIYGINYK---DNPENALAW 73 (127)
T ss_pred CCcccccccCCCccccHHHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHhc------CcEEEEEECC---CCHHHHHHH
Confidence 4999999999 889999999999999999999998 999999999987654 3777888875 667999999
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+++++..|+.+. .|....+++.|++...|+ +|+||++|+|++.+.|..+.+.
T Consensus 74 ~~~~~~~~~~~~--~D~~~~~~~~~~v~~~P~--------------~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 74 LARHGNPYAAVG--FDPDGRVGIDLGVYGVPE--------------TFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHhcCCCCceEE--ECCcchHHHhcCCCCCCe--------------EEEECCCceEEEEEeccCChHh
Confidence 999998886442 345577899999998887 8999999999999988887654
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=158.17 Aligned_cols=108 Identities=15% Similarity=0.268 Sum_probs=91.9
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhc----CCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS----GIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~----g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.+++++++||+|+|+|||||||+ |..++|.|.+++++++++. ..++.+|+|+.|. +.+.+++|+++++++|+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCpp-Cr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~---~~~~~~~f~~~~~~~~~ 92 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQ-CQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ---SEQQQESFLKDMPKKWL 92 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC---CHHHHHHHHHHCCCCce
Confidence 46788999999999999999998 9999999999999997651 2368999999873 45789999999998886
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
.+....+....+++.|++..+|+ +||||++|+|+..
T Consensus 93 ~~p~~~~~~~~l~~~y~v~~iPt--------------~vlId~~G~Vv~~ 128 (146)
T cd03008 93 FLPFEDEFRRELEAQFSVEELPT--------------VVVLKPDGDVLAA 128 (146)
T ss_pred eecccchHHHHHHHHcCCCCCCE--------------EEEECCCCcEEee
Confidence 65433445568999999999888 9999999999986
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-21 Score=156.96 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=97.5
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC--CCCCHHHHHHHHHHhCCCce
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--ERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--~~Dt~e~l~~~~~~~~~~~~ 248 (321)
|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|+.+. ..++++.+++|+++++++|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~-C~~~~p~l~~l~~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCIN-CLHTLPYLTDLEQKYKDD---GLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHcCcC---CeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 5789999999999999999999998 999999999999999865 68888887642 13578999999999999999
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
.+ .|....+++.|++...|+ +||||++|+|++.+.|.
T Consensus 89 ~~---~D~~~~~~~~~~v~~~P~--------------~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 89 VA---NDNDYATWRAYGNQYWPA--------------LYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EE---ECCchHHHHHhCCCcCCe--------------EEEECCCCcEEEEEecC
Confidence 88 677788899999987776 99999999999987664
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=181.81 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC--C
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE--R 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~--~ 230 (321)
..+++++| +|++.|.+|+.+.++ +||+|||+||++||++ |+.++|.|++++++++.+ ++.+|+|+++.. .
T Consensus 32 ~~~~~~lP--~f~l~D~dG~~v~ls--kGKpVvV~FWATWCpp-Ck~emP~L~eL~~e~k~~---~v~VI~Vs~~~~~~e 103 (521)
T PRK14018 32 ATVPHTLS--TLKTADNRPASVYLK--KDKPTLIKFWASWCPL-CLSELGETEKWAQDAKFS---SANLITVASPGFLHE 103 (521)
T ss_pred ccccCCCC--CeEeecCCCceeecc--CCCEEEEEEEcCCCHH-HHHHHHHHHHHHHHhccC---CeEEEEEeccccccc
Confidence 45555666 999999999999987 8999999999999998 999999999999999754 577788876422 2
Q ss_pred CCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 231 DTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
++.+.+++|++..+. +++++ .|....+++.|+|..+|+ ++|||++|+|+..+.|..+.+++.
T Consensus 104 ~~~~~~~~~~~~~~y~~~pV~---~D~~~~lak~fgV~giPT--------------t~IIDkdGkIV~~~~G~~~~eeL~ 166 (521)
T PRK14018 104 KKDGDFQKWYAGLDYPKLPVL---TDNGGTLAQSLNISVYPS--------------WAIIGKDGDVQRIVKGSISEAQAL 166 (521)
T ss_pred ccHHHHHHHHHhCCCccccee---ccccHHHHHHcCCCCcCe--------------EEEEcCCCeEEEEEeCCCCHHHHH
Confidence 356778888877664 45666 677788999999999998 899999999999998999988887
Q ss_pred HHHH
Q 020776 310 DGII 313 (321)
Q Consensus 310 ~~l~ 313 (321)
+.|+
T Consensus 167 a~Ie 170 (521)
T PRK14018 167 ALIR 170 (521)
T ss_pred HHHH
Confidence 7666
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=165.75 Aligned_cols=151 Identities=15% Similarity=0.243 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeE-EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWT-VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~v-LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
+.+|+++| +|++.+.+|+.+.+++++|||+ |++||++|||. |..|++.|++++++|+++ ++.+|+||+|.. .
T Consensus 2 ~~~Gd~aP--dF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpv-Ct~El~~l~~~~~~f~~~---gv~vigIS~D~~-~ 74 (215)
T PRK13599 2 KLLGEKFP--SMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPV-CTTEFVEFARKANDFKEL---NTELIGLSVDQV-F 74 (215)
T ss_pred CCCCCCCC--CCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeCCCH-H
Confidence 46899999 9999999999888899999986 57999999996 999999999999999876 578899997642 1
Q ss_pred CHHHHHHHHHH---hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 232 TVEQVREYVKE---FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 232 t~e~l~~~~~~---~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
....+.+++++ .+++|+++ .|..+++++.||+... . . .....+++||||++|+|++.+.........
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil---~D~~~~va~~yg~~~~-~--~----~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~ 144 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVI---ADDLGKVSNQLGMIHP-G--K----GTNTVRAVFIVDDKGTIRLIMYYPQEVGRN 144 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEE---ECCCchHHHHcCCCcc-C--C----CCceeeEEEEECCCCEEEEEEEcCCCCCCC
Confidence 12233344443 36789988 6777889999998531 1 0 112357799999999999886444444455
Q ss_pred HHHHHHHHHHHh
Q 020776 309 ADGIIKEIKQYK 320 (321)
Q Consensus 309 ~~~l~~~L~~~k 320 (321)
.++|.+.|++++
T Consensus 145 ~~eilr~l~~lq 156 (215)
T PRK13599 145 VDEILRALKALQ 156 (215)
T ss_pred HHHHHHHHHHhh
Confidence 666666666554
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=163.95 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=111.8
Q ss_pred CCCCCCCCCCeEEEcCC--CC---eeecccc-CCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 154 SVGKAAIGGPFKLINHD--GK---NVTEKDF-LGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~--G~---~vsLsd~-kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.+|+++| +|++.+.. |+ .++++++ +||++||+||++ ||+. |..|++.|++++++|+++ ++.+|+||+
T Consensus 3 ~vg~~aP--dF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~v-C~~El~~l~~~~~~f~~~---g~~vigvS~ 76 (200)
T PRK15000 3 LVTRQAP--DFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFV-CPSELIAFDKRYEEFQKR---GVEVVGVSF 76 (200)
T ss_pred cCCCcCC--CCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEEC
Confidence 4788998 99999864 44 3456665 899999999996 8885 999999999999999876 678899997
Q ss_pred CCCCCCHHHHHHHHH----HhC---CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVK----EFH---PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~----~~~---~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|. ++..+.|.+ +.+ ++|+.+ .|..+++++.||+..... -...|.+||||++|+|++.+
T Consensus 77 D~----~~~~~~w~~~~~~~~g~~~i~fpll---sD~~~~ia~~ygv~~~~~--------g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 77 DS----EFVHNAWRNTPVDKGGIGPVKYAMV---ADVKREIQKAYGIEHPDE--------GVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred CC----HHHHHHHHhhHHHhCCccccCceEE---ECCCcHHHHHcCCccCCC--------CcEEeEEEEECCCCEEEEEE
Confidence 63 455555543 344 578888 677789999999864211 01346799999999999988
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 020776 300 GKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 300 ~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+........+++.+.+++++
T Consensus 142 ~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 142 VNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred ecCCCCCCCHHHHHHHHHHhh
Confidence 776666666777777776654
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-20 Score=164.76 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=113.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
.+.+|+++| +|++.+.+|+....++++|||+|| +||++||+. |..|++.|++++++|+++ ++.+|+||+|.
T Consensus 6 ~~~iG~~aP--dF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpv-C~tEl~~l~~~~~ef~~~---g~~VigvS~Ds-- 77 (215)
T PRK13191 6 IPLIGEKFP--EMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPV-CTTEFYSFAKKYEEFKKL---NTELIGLSVDS-- 77 (215)
T ss_pred cccCCCcCC--CCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEECCC--
Confidence 567999999 999999999744335589998776 889999996 999999999999999877 67889999874
Q ss_pred CCHHHHHH---HHHH---hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 231 DTVEQVRE---YVKE---FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 231 Dt~e~l~~---~~~~---~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
....++ +.++ .+++|+.+ .|..++++++||+..... .....+.+||||++|+|++.+.+...
T Consensus 78 --~~~h~aw~~~~~~~~~~~i~fPll---sD~~~~ia~~ygv~~~~~-------~~~~~r~tfIID~~G~Ir~~~~~~~~ 145 (215)
T PRK13191 78 --NISHIEWVMWIEKNLKVEVPFPII---ADPMGNVAKRLGMIHAES-------STATVRAVFIVDDKGTVRLILYYPME 145 (215)
T ss_pred --HHHHHHHHhhHHHhcCCCCceEEE---ECCchHHHHHcCCccccc-------CCceeEEEEEECCCCEEEEEEecCCC
Confidence 344444 4443 35789998 777799999999854211 01245779999999999998655555
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.....+++.+.|++++
T Consensus 146 ~gr~~~eilr~l~alq 161 (215)
T PRK13191 146 IGRNIDEILRAIRALQ 161 (215)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 5556677777776654
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-20 Score=146.68 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=92.5
Q ss_pred CCeEEEcCCCCeeeccccC-CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFL-GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~k-GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|++++.+|+.+++++++ ||++||+||++||++ |+.++|.|+++++++.+ ++.++.++ | ++.+..++|+
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~-C~~~~p~l~~~~~~~~~----~~~vi~v~-~---~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPV-CKKLLPVIRSIARAEAD----WLDVVLAS-D---GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcc-hHhHhHHHHHHHHHhcC----CcEEEEEe-C---CCHHHHHHHH
Confidence 4899999999999999997 999999999999998 99999999999888743 36556665 3 4578999999
Q ss_pred HHhCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 241 KEFHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 241 ~~~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+++++. ++.+. + ..+.+.|++..+|+ +||||++|+|+++
T Consensus 72 ~~~~~~~~p~~~---~--~~~~~~~~~~~~P~--------------~~vid~~G~v~~~ 111 (114)
T cd02967 72 KKHGLEAFPYVL---S--AELGMAYQVSKLPY--------------AVLLDEAGVIAAK 111 (114)
T ss_pred HHhCCCCCcEEe---c--HHHHhhcCCCCcCe--------------EEEECCCCeEEec
Confidence 999984 77763 2 34788999988777 9999999999885
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=162.02 Aligned_cols=146 Identities=17% Similarity=0.283 Sum_probs=110.7
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCC-CeEE-EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLG-KWTV-IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vL-L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
+|+.+| +|++.+.+| .+++++++| |++| ++||++|||. |..+++.|++++++|+++ ++.+|+||+|+
T Consensus 1 vG~~aP--~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~-C~~el~~l~~~~~~f~~~---gv~vigvS~D~---- 69 (203)
T cd03016 1 LGDTAP--NFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPV-CTTELGAFAKLAPEFKKR---NVKLIGLSVDS---- 69 (203)
T ss_pred CcCCCC--CeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCc-CHHHHHHHHHHHHHHHHc---CCEEEEEECCC----
Confidence 577888 999999988 589999998 7764 5889999996 999999999999999876 67888999874
Q ss_pred HHHHHHHHHH------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 233 VEQVREYVKE------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 233 ~e~l~~~~~~------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
.+..++|.+. .+++|+++ .|..+.+++.||+..... + .-...+.+||||++|+|++.+.+.....
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil---~D~~~~ia~~yg~~~~~~---~---~~~~~r~~fiID~~G~I~~~~~~~~~~g 140 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPII---ADPDREVAKLLGMIDPDA---G---STLTVRAVFIIDPDKKIRLILYYPATTG 140 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEE---ECchHHHHHHcCCccccC---C---CCceeeEEEEECCCCeEEEEEecCCCCC
Confidence 3455555443 57889988 788899999999864210 0 0012467999999999998876655444
Q ss_pred HHHHHHHHHHHHHh
Q 020776 307 SLADGIIKEIKQYK 320 (321)
Q Consensus 307 ~l~~~l~~~L~~~k 320 (321)
...+++.+.|++++
T Consensus 141 r~~~ell~~l~~lq 154 (203)
T cd03016 141 RNFDEILRVVDALQ 154 (203)
T ss_pred CCHHHHHHHHHHHh
Confidence 44566666666553
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=160.10 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=115.3
Q ss_pred CCCCCCCCCCeEEEcC---CCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLINH---DGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~---~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.||.++| +|+.... +...++|++++||++||+|| ++|||. |..|++.|++++++|++. ++.+|+||.
T Consensus 3 ~~~~~~p--~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~-C~~el~~l~~~~~~f~~~---g~~vigIS~--- 73 (187)
T PRK10382 3 LINTKIK--PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-CPTELGDVADHYEELQKL---GVDVYSVST--- 73 (187)
T ss_pred ccCCcCC--CcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHhC---CCEEEEEeC---
Confidence 5788998 9998763 34567888999999999999 999996 999999999999999876 678899996
Q ss_pred CCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 230 RDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
|+++..++|.+.. +++|+.+ .|....++++||+..... -...+.+||||++|+|++.+......
T Consensus 74 -D~~~~~~a~~~~~~~~~~l~fpll---sD~~~~ia~~ygv~~~~~--------g~~~r~tfIID~~G~I~~~~~~~~~~ 141 (187)
T PRK10382 74 -DTHFTHKAWHSSSETIAKIKYAMI---GDPTGALTRNFDNMREDE--------GLADRATFVVDPQGIIQAIEVTAEGI 141 (187)
T ss_pred -CCHHHHHHHHHhhccccCCceeEE---EcCchHHHHHcCCCcccC--------CceeeEEEEECCCCEEEEEEEeCCCC
Confidence 4578889998764 6789999 678899999999853211 01347799999999999987555444
Q ss_pred hHHHHHHHHHHHHHh
Q 020776 306 NSLADGIIKEIKQYK 320 (321)
Q Consensus 306 ~~l~~~l~~~L~~~k 320 (321)
....+++.+.|++++
T Consensus 142 ~~~~~eil~~l~alq 156 (187)
T PRK10382 142 GRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCHHHHHHHHHhhh
Confidence 445666666666554
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=165.42 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=116.8
Q ss_pred cCCCCCCCCCCCCCeEEEc-CCC--Ceeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEE
Q 020776 150 KQGPSVGKAAIGGPFKLIN-HDG--KNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 224 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d-~~G--~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~I 224 (321)
...+.+|+++| +|++.+ .+| +.++++++ +||++||+|| ++|||. |..|++.|++++++|+++ ++.+|+|
T Consensus 65 ~~~~~vGd~aP--dF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpv-Ct~El~~l~~~~~ef~~~---gv~VigI 138 (261)
T PTZ00137 65 VTSSLVGKLMP--SFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFV-CPSELLGFSERLKEFEER---GVKVLGV 138 (261)
T ss_pred cccccCCCCCC--CCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEE
Confidence 34578999999 999987 455 46899998 8999988887 899997 999999999999999876 5778899
Q ss_pred eeCCCCCCHHHHHHHHHH-------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 225 SVDPERDTVEQVREYVKE-------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~-------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
|+|. +...++|.+. .+++|+++ .|..++++++||+... . ....|.+||||++|+|++
T Consensus 139 S~Ds----~~~h~aw~~~~~~~~g~~~l~fPlL---sD~~~~iakayGv~~~-~--------g~a~R~tFIID~dG~I~~ 202 (261)
T PTZ00137 139 SVDS----PFSHKAWKELDVRQGGVSPLKFPLF---SDISREVSKSFGLLRD-E--------GFSHRASVLVDKAGVVKH 202 (261)
T ss_pred ECCC----HHHHHHHHhhhhhhccccCcceEEE---EcCChHHHHHcCCCCc-C--------CceecEEEEECCCCEEEE
Confidence 9763 4566666653 46789998 6677899999998531 1 013466999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHHHHh
Q 020776 298 FFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 298 ~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+..+.......+++.++|++++
T Consensus 203 ~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 203 VAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhc
Confidence 87555555566777777777664
|
|
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=150.26 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=107.7
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|+++|.+|+.+++++++||++||+|| ++||+. |..+++.|++++++|+++ ++.+|+|+.| +++.+++|+
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~~~~i~is~d----~~~~~~~~~ 74 (140)
T cd02971 3 PDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPV-CTTELCAFRDLAEEFAKG---GAEVLGVSVD----SPFSHKAWA 74 (140)
T ss_pred CCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeCC----CHHHHHHHH
Confidence 4999999999999999999999999999 789997 999999999999999755 5778888864 568899999
Q ss_pred HHh-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 241 KEF-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 241 ~~~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
+++ +.+|+++ .|....+++.||+...+... .....|++||||++|+|++.+.+...
T Consensus 75 ~~~~~~~~~~l---~D~~~~~~~~~g~~~~~~~~-----~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 75 EKEGGLNFPLL---SDPDGEFAKAYGVLIEKSAG-----GGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred hcccCCCceEE---ECCChHHHHHcCCccccccc-----cCceeEEEEEECCCCcEEEEEecCCC
Confidence 999 8999998 45667899999998877421 11245779999999999999866554
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=147.24 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
|+|++++.+|+.+++++++||++||+||++||++ |..++|.|++++++ +.+++|++|. ++++.+++|++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~-C~~~~~~l~~~~~~--------~~~i~i~~~~--~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPV-CRFTSPTVNQLAAD--------YPVVSVALRS--GDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChh-hhhhChHHHHHHhh--------CCEEEEEccC--CCHHHHHHHHH
Confidence 4899999999999999999999999999999997 99999999999865 2346677774 56899999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++++|+.+ .|...++.+.|++...|+ ++|||++| |++.+.|..+.+.+.+.+
T Consensus 70 ~~~~~~~~~---~d~~~~~~~~~~i~~~P~--------------~~vid~~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 70 KKGYGFPVI---NDPDGVISARWGVSVTPA--------------IVIVDPGG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred HcCCCccEE---ECCCcHHHHhCCCCcccE--------------EEEEcCCC-eEEEEeccCCHHHHHhhc
Confidence 999999988 455577899999988887 99999999 999988888888876653
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=141.97 Aligned_cols=116 Identities=25% Similarity=0.382 Sum_probs=103.4
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+|++.+.+|+.+++++++||++||+||++||+. |...++.|.++.+++++. ++.+++|++|++ +++.+++|+++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~~~~~~v~~d~~--~~~~~~~~~~~ 74 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPP-CRAEMPELEALAKEYKDD---GVEVVGVNVDDD--DPAAVKAFLKK 74 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChh-HHHHhHHHHHHHHHhCCC---CeEEEEEECCCC--CHHHHHHHHHH
Confidence 478899999999999999999999999999998 999999999999999744 688899999864 68999999999
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++.+|+++ .|...++.+.|++...|. ++|+|++|+|++.+.|
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~~~P~--------------~~l~d~~g~v~~~~~g 116 (116)
T cd02966 75 YGITFPVL---LDPDGELAKAYGVRGLPT--------------TFLIDRDGRIRARHVG 116 (116)
T ss_pred cCCCcceE---EcCcchHHHhcCcCccce--------------EEEECCCCcEEEEecC
Confidence 99999988 455678899999987776 9999999999988743
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=149.31 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=91.7
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
+++++++++||++||+||++||++ |+.++|.|++++++++++ +.++.+++|++|+ +.+.+++|+++++ .|..+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~-C~~~~p~l~~l~~~~~~~-~~~v~vi~Vs~d~---~~~~~~~~~~~~~-~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKEE-GKNFEIVFVSRDR---SEESFNEYFSEMP-PWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCch-HHHHHHHHHHHHHHHhhc-CCCeEEEEEecCC---CHHHHHHHHhcCC-CeEeec
Confidence 599999999999999999999998 999999999999999865 3468889999985 3588999999998 666664
Q ss_pred CCh-HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 252 GSP-DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 252 ~~~-d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
... +....+++.|++..+|+ ++|||++|+|+.+.
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt--------------~~lid~~G~iv~~~ 116 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPT--------------LVVLKPDGDVVTTN 116 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCE--------------EEEECCCCCEEchh
Confidence 333 34567788899998887 99999999999864
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=159.15 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=111.9
Q ss_pred CCCCCCCCCCCeEEEc----CCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 153 PSVGKAAIGGPFKLIN----HDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d----~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
..+|+++| +|++.+ .+|++++|++++||++||+||+ +||+. |+.+++.|.+++++|+++ ++.+|+||+|
T Consensus 6 ~~~G~~aP--dF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~-C~~e~~~l~~~~~~f~~~---g~~vv~IS~d 79 (199)
T PTZ00253 6 AKINHPAP--SFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-CPTEIIQFSDSVKRFNEL---NCEVLACSMD 79 (199)
T ss_pred cccCCcCC--CCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCc-CHHHHHHHHHHHHHHHHc---CCEEEEEeCC
Confidence 56899998 999664 5678999999999999999995 77995 999999999999999876 6888999987
Q ss_pred CCCCCHHHHHHHHH--H----h-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVK--E----F-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~--~----~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+. ....+|.. + . +++|+++ .|..+++++.||+...... ...+.+||||++|+|++.+.
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~fpll---~D~~~~ia~~ygv~~~~~g--------~~~r~~fiID~~G~i~~~~~ 144 (199)
T PTZ00253 80 SE----YAHLQWTLQERKKGGLGTMAIPML---ADKTKSIARSYGVLEEEQG--------VAYRGLFIIDPKGMLRQITV 144 (199)
T ss_pred CH----HHHHHHHhChHhhCCccccccceE---ECcHhHHHHHcCCcccCCC--------ceEEEEEEECCCCEEEEEEe
Confidence 53 33333322 1 1 3688888 7888999999998643210 12367999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q 020776 301 KNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 301 ~~~~~~~l~~~l~~~L~~~k 320 (321)
+........+++.+.|++++
T Consensus 145 ~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 145 NDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred cCCCCCCCHHHHHHHHHhhh
Confidence 65555555666666666553
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-19 Score=160.11 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccc-cCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKD-FLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd-~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
...+|+++| +|++.+.+|+ +++++ ++|||++| +||++||+. |..|++.|++++++|+++ ++.+|+||+|.
T Consensus 8 ~~~vG~~aP--dF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpv-C~tEl~~l~~~~~ef~~~---~v~VigvS~D~- 79 (222)
T PRK13189 8 MPLIGDKFP--EFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPV-CTTEFVAFQKRYDEFREL---NTELIGLSIDQ- 79 (222)
T ss_pred cccCCCcCC--CcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCC-CHHHHHHHHHHHHHHHHc---CCEEEEEECCC-
Confidence 357899999 9999999985 67776 59997665 779999996 999999999999999876 67789999874
Q ss_pred CCCHHHHHHHHHH----h--CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 230 RDTVEQVREYVKE----F--HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 230 ~Dt~e~l~~~~~~----~--~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
.....+|++. . +++|+++ .|..++++++||+..... . -...|++||||++|+|++.+..+.
T Consensus 80 ---~~~h~aw~~~~~~~~g~~i~fPll---sD~~~~ia~~ygv~~~~~---~----~~~~r~tfIID~~G~Ir~~~~~~~ 146 (222)
T PRK13189 80 ---VFSHIKWVEWIKEKLGVEIEFPII---ADDRGEIAKKLGMISPGK---G----TNTVRAVFIIDPKGIIRAILYYPQ 146 (222)
T ss_pred ---HHHHHHHHHhHHHhcCcCcceeEE---EcCccHHHHHhCCCcccc---C----CCceeEEEEECCCCeEEEEEecCC
Confidence 3444455443 2 4678888 677889999999864211 0 014577999999999998865544
Q ss_pred ChhHHHHHHHHHHHHHh
Q 020776 304 DVNSLADGIIKEIKQYK 320 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~~k 320 (321)
......+++.++|++++
T Consensus 147 ~~gr~~~eilr~l~alq 163 (222)
T PRK13189 147 EVGRNMDEILRLVKALQ 163 (222)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 44444556666666553
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-19 Score=153.97 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=110.8
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVR 237 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~ 237 (321)
.+|++++.+|+.++|++++||+|||+|||+||+. |. +++.|++++++|+++ ++.+|+|+++. +.++.++++
T Consensus 6 ~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~-~~-q~~~L~~L~~~y~~~---gl~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 6 LTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGL-TP-QYEQLENIQKAWADQ---GFVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred cCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCC-cH-HHHHHHHHHHHHhhC---CeEEEEeeccccccCCCCCHHHHH
Confidence 3999999999999999999999999999999997 85 799999999999876 68889998862 346789999
Q ss_pred HHHH-HhCCCceeecC-----C-hHHHHHHHH-HcCceEeecCCC------------CCCcccccceEEEEEcCCCeEEE
Q 020776 238 EYVK-EFHPKLIGLTG-----S-PDEIRNIAR-AYRVYYMKTAEE------------DSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 238 ~~~~-~~~~~~~~l~~-----~-~d~~~~~a~-~ygv~~~p~~~~------------~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
+|++ +++++|+++.. . ..+.-+..+ +......+.... ...-.+.+...-||||++|+++.
T Consensus 81 ~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~ 160 (183)
T PRK10606 81 TYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ 160 (183)
T ss_pred HHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEE
Confidence 9997 79999987731 1 112222221 221100000000 00013556677999999999999
Q ss_pred EeCCCCChhH--HHHHHHHHHH
Q 020776 298 FFGKNNDVNS--LADGIIKEIK 317 (321)
Q Consensus 298 ~~~~~~~~~~--l~~~l~~~L~ 317 (321)
+|.....+.+ +.+.|+++|.
T Consensus 161 r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 161 RFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred EECCCCCCCHHHHHHHHHHHhc
Confidence 9988877776 8888877763
|
|
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-19 Score=146.89 Aligned_cols=113 Identities=25% Similarity=0.422 Sum_probs=93.8
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
|+|.+|+.+++++++||+|||+||++||++ |..++|.|+++++++.++ +.++.+++|++|.. .+.+++|.++++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~~~~~~~~~-~~~~~vv~is~d~~---~~~~~~~~~~~~- 76 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKES-GKNFEIVFISWDRD---EESFNDYFSKMP- 76 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChH-HHHHhHHHHHHHHHHHhc-CCCEEEEEEECCCC---HHHHHHHHHcCC-
Confidence 568899999999999999999999999998 999999999999999865 44688899999853 477888887764
Q ss_pred CceeecCC-hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 246 KLIGLTGS-PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 246 ~~~~l~~~-~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|..+... .+....+++.|++...|+ ++|||++|+|+.+.
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~ 116 (131)
T cd03009 77 -WLAVPFSDRERRSRLNRTFKIEGIPT--------------LIILDADGEVVTTD 116 (131)
T ss_pred -eeEcccCCHHHHHHHHHHcCCCCCCE--------------EEEECCCCCEEccc
Confidence 3333222 355678899999998887 99999999998864
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-19 Score=190.44 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=124.7
Q ss_pred CCCCCCCCCCCCCeEEEc--CCCCeeec-cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee-
Q 020776 151 QGPSVGKAAIGGPFKLIN--HDGKNVTE-KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV- 226 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d--~~G~~vsL-sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~- 226 (321)
....+|.++| +|...+ .+|+++++ ++++||+|||+||++||++ |+.++|.|++++++|+++ ++.+|+|++
T Consensus 389 ~~~~~g~~~p--~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~p-C~~e~P~L~~l~~~y~~~---~~~vvgV~~~ 462 (1057)
T PLN02919 389 ESKKTATKVP--EFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCIN-CMHVLPDLEFLEKKYKDQ---PFTVVGVHSA 462 (1057)
T ss_pred hccccCCcCC--CCcccccccCCccccchhhcCCCEEEEEEECCcChh-HHhHhHHHHHHHHHcCCC---CeEEEEEecc
Confidence 3455788888 998876 78999998 6899999999999999998 999999999999999865 588888874
Q ss_pred --CCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 227 --DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 227 --Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
|.+ ++.+.+++|+++++++|+.+ .|....+++.|++..+|+ +||||++|+|++++.|...
T Consensus 463 ~~D~~-~~~~~~~~~~~~~~i~~pvv---~D~~~~~~~~~~V~~iPt--------------~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 463 KFDNE-KDLEAIRNAVLRYNISHPVV---NDGDMYLWRELGVSSWPT--------------FAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred ccccc-ccHHHHHHHHHHhCCCccEE---ECCchHHHHhcCCCccce--------------EEEECCCCeEEEEEecccC
Confidence 443 34788999999999999988 566778999999999998 9999999999999988888
Q ss_pred hhHHHHHHHHHHHHH
Q 020776 305 VNSLADGIIKEIKQY 319 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~ 319 (321)
.+++.+.|.+++.-+
T Consensus 525 ~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 525 RKDLDDLVEAALQYY 539 (1057)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888887644
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=152.26 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCeEEEcC----------CCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcE--
Q 020776 152 GPSVGKAAIGGPFKLINH----------DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI-- 219 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~----------~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v-- 219 (321)
...+|++.| ..++.+. +.+.++.++++||+.||+|||+||++ |..+.|.|.++. ++ |+.+
T Consensus 22 ~~~~~~~~p--~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~-c~~e~P~l~~l~----~~-~~~~~~ 93 (184)
T TIGR01626 22 NLQVEQSVP--SVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSA-KEXNASLIDAIK----AA-KFPPVK 93 (184)
T ss_pred hhhcCCcCC--ceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCCh-hhccchHHHHHH----Hc-CCCccc
Confidence 445666666 5555443 33567788899999999999999998 999999999993 22 3333
Q ss_pred --EEEEEeeCCCC-CCHHHHHHHHHHhCCCce---eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC
Q 020776 220 --VPAFISVDPER-DTVEQVREYVKEFHPKLI---GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM 293 (321)
Q Consensus 220 --~vV~IS~Dp~~-Dt~e~l~~~~~~~~~~~~---~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG 293 (321)
..+.|+.|... ++..-++.|+++.+..++ ++ .|..+.++..|++...|+ ++||||++|
T Consensus 94 y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl---lD~~g~v~~~~gv~~~P~-------------T~fVIDk~G 157 (184)
T TIGR01626 94 YQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV---LDDKGAVKNAWQLNSEDS-------------AIIVLDKTG 157 (184)
T ss_pred ccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE---ECCcchHHHhcCCCCCCc-------------eEEEECCCC
Confidence 12667876321 133446667777777776 55 566778889999999887 149999999
Q ss_pred eEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 294 EFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 294 ~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
+|++.+.|..+.+++.+ +..+++++-
T Consensus 158 kVv~~~~G~l~~ee~e~-~~~li~~ll 183 (184)
T TIGR01626 158 KVKFVKEGALSDSDIQT-VISLVNGLL 183 (184)
T ss_pred cEEEEEeCCCCHHHHHH-HHHHHHHHh
Confidence 99999999988888766 777777653
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=144.85 Aligned_cols=129 Identities=15% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCeEEEcCCCCeeeccccC-CCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFL-GKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~k-GK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
|+|+++|.+|+.++++++. +|++|| +||++|||. |..+++.|++++++++++ ++.+|+|+.|. .+.+.+|
T Consensus 3 p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~-C~~~~~~l~~~~~~~~~~---~v~vv~V~~~~----~~~~~~~ 74 (149)
T cd02970 3 PDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-CREYLRALSKLLPELDAL---GVELVAVGPES----PEKLEAF 74 (149)
T ss_pred CCccccCCCCCEEchHHHhcCCCEEEEEECCCCChh-HHHHHHHHHHHHHHHHhc---CeEEEEEeCCC----HHHHHHH
Confidence 4999999999999999875 465555 457999997 999999999999999866 68888998653 4667789
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCC---------------CCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE---------------EDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~---------------~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
.++++++|+++ .|....++++||+....... .+........|++||||++|+|++.+.+
T Consensus 75 ~~~~~~~~p~~---~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 75 DKGKFLPFPVY---ADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHhcCCCCeEE---ECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 99999999999 67788999999986432100 0001112345789999999999998754
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=144.15 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=91.8
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
++|++ .+|+.+++++++ ||+||++|||+ |..++|.|++++++|+ +.+++|++|...
T Consensus 56 ~~f~l--~dG~~v~lsd~~----lV~FwaswCp~-C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~----------- 111 (181)
T PRK13728 56 RWFRL--SNGRQVNLADWK----VVLFMQGHCPY-CHQFDPVLKQLAQQYG------FSVFPYTLDGQG----------- 111 (181)
T ss_pred CccCC--CCCCEeehhHce----EEEEECCCCHh-HHHHHHHHHHHHHHcC------CEEEEEEeCCCC-----------
Confidence 47877 489999999997 77899999998 9999999999999872 677888988432
Q ss_pred HhCCCceeecCChHHHHHHHHHcCc--eEeecCCCCCCcccccceEEEEEcCCCeEEE-EeCCCCChhHHHHHHHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRV--YYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK-FFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv--~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~-~~~~~~~~~~l~~~l~~~L~~ 318 (321)
...|+.+.. +....+.+.|++ ..+|+ +||||++|++++ .+.|..+.+++.+.+.+++..
T Consensus 112 --~~~fPv~~d--d~~~~~~~~~g~~~~~iPt--------------tfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 112 --DTAFPEALP--APPDVMQTFFPNIPVATPT--------------TFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred --CCCCceEec--CchhHHHHHhCCCCCCCCe--------------EEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 157777732 233556778885 46666 999999999975 678999999998888888754
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-18 Score=131.09 Aligned_cols=95 Identities=25% Similarity=0.435 Sum_probs=83.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
||+++|+||++||++ |..++|.|.+++++|++ +.++.+|+|+.| ++.+.++++.++++.+|..+....+....+
T Consensus 1 gK~~ll~fwa~~c~~-c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (95)
T PF13905_consen 1 GKPVLLYFWASWCPP-CKKELPKLKELYKKYKK--KDDVEFVFVSLD---EDEEEWKKFLKKNNFPWYNVPFDDDNNSEL 74 (95)
T ss_dssp TSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTT--TTTEEEEEEE-S---SSHHHHHHHHHTCTTSSEEEETTTHHHHHH
T ss_pred CCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC--CCCEEEEEEEeC---CCHHHHHHHHHhcCCCceEEeeCcchHHHH
Confidence 799999999999998 99999999999999984 347999999998 457899999999988898887777778899
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
.+.|++..+|+ ++|||++|+|
T Consensus 75 ~~~~~i~~iP~--------------~~lld~~G~I 95 (95)
T PF13905_consen 75 LKKYGINGIPT--------------LVLLDPDGKI 95 (95)
T ss_dssp HHHTT-TSSSE--------------EEEEETTSBE
T ss_pred HHHCCCCcCCE--------------EEEECCCCCC
Confidence 99999999888 9999999987
|
... |
| >COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=141.79 Aligned_cols=148 Identities=20% Similarity=0.294 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCeEEEcC-CCC---eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 153 PSVGKAAIGGPFKLINH-DGK---NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~-~G~---~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
..||+.+| +|+.... .|. +++++++.|||++|+||.-...++|+.|+..+++.+++|++. ++++|++|+|.
T Consensus 3 ~lIg~~aP--~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---g~eVigvS~Ds 77 (194)
T COG0450 3 SLIGKKAP--DFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---GVEVIGVSTDS 77 (194)
T ss_pred cccCCcCC--CcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---CCEEEEEecCc
Confidence 56899999 9999988 775 899999999999999999999999999999999999999987 78889999875
Q ss_pred CCCCHHHHHHHHHH----hC---CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 229 ERDTVEQVREYVKE----FH---PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~----~~---~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+ ....+|.+. .+ ++|+.+ .|..+++++.||+...... ...+.+|||||+|+|++....
T Consensus 78 ~----fsH~aW~~~~~~~~gi~~i~~Pmi---aD~~~~vs~~ygvl~~~~g--------~a~R~~FIIDp~g~ir~~~v~ 142 (194)
T COG0450 78 V----FSHKAWKATIREAGGIGKIKFPMI---ADPKGEIARAYGVLHPEEG--------LALRGTFIIDPDGVIRHILVN 142 (194)
T ss_pred H----HHHHHHHhcHHhcCCccceecceE---EcCchhHHHHcCCcccCCC--------cceeEEEEECCCCeEEEEEEe
Confidence 4 555555554 34 678888 8999999999999764321 155779999999999998766
Q ss_pred CCChhHHHHHHHHHHHHHh
Q 020776 302 NNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~~~k 320 (321)
........+++.+.+++++
T Consensus 143 ~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 143 PLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 6666667777777777664
|
|
| >cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=135.87 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=104.0
Q ss_pred CCCCCCCCCeEEEcCC---CCeeeccc-cCCCeEEEEE-ecCCCCCCcHHH-HHHHHHHHHHHhhhcCCcE-EEEEEeeC
Q 020776 155 VGKAAIGGPFKLINHD---GKNVTEKD-FLGKWTVIYF-GFTHCPDICPDE-LQKLAAAVDKIKENSGIDI-VPAFISVD 227 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~---G~~vsLsd-~kGK~vLL~F-watwCp~vC~~e-lp~L~~l~~~~~~~~g~~v-~vV~IS~D 227 (321)
+|+++| +|++.+.+ |+.++|++ ++||++||+| +..|||. |..| ++.+++.+++|++. ++ .+++||.
T Consensus 1 vG~~aP--dF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~-Ct~e~~~~~~~~~~~f~~~---g~~~V~~iS~- 73 (155)
T cd03013 1 VGDKLP--NVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPT-CSAQHLPGYVENADELKAK---GVDEVICVSV- 73 (155)
T ss_pred CCCcCC--CeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCC-CchhHHHHHHHhHHHHHHC---CCCEEEEEEC-
Confidence 578888 99999986 99999999 5888776655 5899995 9999 99999999999876 55 4788896
Q ss_pred CCCCCHHHHHHHHHHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 228 PERDTVEQVREYVKEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
|++...++|+++++. +|+.+ .|...+++++||+........ ......+.+|||| +|+|++.+..
T Consensus 74 ---D~~~~~~~~~~~~~~~~~f~lL---sD~~~~~~~~ygv~~~~~~~~---~~~~~~R~~fiId-~g~I~~~~~~ 139 (155)
T cd03013 74 ---NDPFVMKAWGKALGAKDKIRFL---ADGNGEFTKALGLTLDLSAAG---GGIRSKRYALIVD-DGKVKYLFVE 139 (155)
T ss_pred ---CCHHHHHHHHHhhCCCCcEEEE---ECCCHHHHHHcCCCccccccC---CcceeeeEEEEEC-CCEEEEEEEe
Confidence 567899999999997 89999 777899999999975432100 1112457899999 7999987643
|
The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=127.10 Aligned_cols=117 Identities=25% Similarity=0.401 Sum_probs=105.6
Q ss_pred eEEEcCCCCeeecc-ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 164 FKLINHDGKNVTEK-DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 164 f~l~d~~G~~vsLs-d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
..|.+.+|..+..+ .++||+|.++|-|.|||| |+.-.|.|.++|++++++ +..+.+|+||.|. +.+.+..|..+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~p-CR~FTP~Lk~fYe~l~~~-~~~fEVvfVS~D~---~~~~~~~y~~~ 89 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPP-CRDFTPILKDFYEELKDN-AAPFEVVFVSSDR---DEESLDEYMLE 89 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCc-hhhCCchHHHHHHHHHhc-CCceEEEEEecCC---CHHHHHHHHHh
Confidence 57788889888776 689999999999999999 999999999999999987 6689999999983 46899999999
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
++.+|..+....+...++.++|.|..+|. +.+++++|.++...
T Consensus 90 ~~~~W~~iPf~d~~~~~l~~ky~v~~iP~--------------l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 90 HHGDWLAIPFGDDLIQKLSEKYEVKGIPA--------------LVILKPDGTVVTED 132 (157)
T ss_pred cCCCeEEecCCCHHHHHHHHhcccCcCce--------------eEEecCCCCEehHh
Confidence 99999999888889999999999999998 89999999887653
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=121.41 Aligned_cols=105 Identities=13% Similarity=0.222 Sum_probs=71.9
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
|+.+++++ +.||+||++||++ |+.++|.|++++++++ +.+++|++|... . + .|+..
T Consensus 44 G~~~~l~~----~~lvnFWAsWCpp-Cr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~-----~----~----~fp~~ 99 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPY-CHQFAPVLKRFSQQFG------LPVYAFSLDGQG-----L----T----GFPDP 99 (153)
T ss_pred chhhhcCC----CEEEEEECCCChh-HHHHHHHHHHHHHHcC------CcEEEEEeCCCc-----c----c----ccccc
Confidence 66666655 4599999999998 9999999999998872 456778887431 1 1 23322
Q ss_pred cCChHHHHHHHHHc---CceEeecCCCCCCcccccceEEEEEcCCCeEE-EEeCCCCChhHHHHHHHHH
Q 020776 251 TGSPDEIRNIARAY---RVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV-KFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 251 ~~~~d~~~~~a~~y---gv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv-~~~~~~~~~~~l~~~l~~~ 315 (321)
.. .+. ......| ++...|+ +||||++|.++ ..+.|..+.+++.+.|.++
T Consensus 100 ~~-~~~-~~~~~~~~~~~v~~iPT--------------t~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 100 LP-ATP-EVMQTFFPNPRPVVTPA--------------TFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred cC-Cch-HHHHHHhccCCCCCCCe--------------EEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 11 111 1223445 6667776 99999998864 4677888888877776654
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-15 Score=123.79 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=84.9
Q ss_pred EEEcCCCCeeeccc--cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 165 KLINHDGKNVTEKD--FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 165 ~l~d~~G~~vsLsd--~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
++++.+++...+.+ .+||++||+||++||++ |..+.|.|.++++++.+ .+.++.|++|.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~-C~~~~p~l~~l~~~~~~----~~~~v~v~vd~~~------------ 64 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTV-CQEMAPDVAKLKQKYGD----QVNFVMLNVDNPK------------ 64 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHH-HHHhHHHHHHHHHHhcc----CeeEEEEEcCCcc------------
Confidence 34555555555544 36899999999999998 99999999999999864 3667778876321
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
...+++.|+|..+|+ ++++|++|+++..+.|....+++.+.|.++++.
T Consensus 65 --------------~~~~~~~~~V~~iPt--------------~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 65 --------------WLPEIDRYRVDGIPH--------------FVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred --------------cHHHHHHcCCCCCCE--------------EEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 023467899988887 899999999999988888888888887777653
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=114.23 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=108.2
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt~e~l~~ 238 (321)
+|++++.+|++++|++++||++||.-.||.|.. -+ +...|+.+|++|+++ .+.++++.++ .+..+.+++++
T Consensus 7 d~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGf-Tp-QYegLe~Ly~ky~~~---Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 7 DFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGF-TP-QYEGLEALYKKYKDK---GFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cceeeccCCCCccHHHhCCcEEEEEEcccccCC-cH-hHHHHHHHHHHHhhC---CcEEEeccccccccCCCCCHHHHHH
Confidence 899999999999999999999999999999995 44 899999999999988 5777877764 23356799999
Q ss_pred HHHH-hCCCceeecC------ChHHHHH-HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 239 YVKE-FHPKLIGLTG------SPDEIRN-IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 239 ~~~~-~~~~~~~l~~------~~d~~~~-~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
|++. ++.+|+.+.- ..++.-. +..+-.- ....-.+.+..+-||||++|+|+.+|.....++++..
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g-------~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~ 154 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPG-------KLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIEL 154 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCC-------CccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHH
Confidence 9985 5788876631 1111111 1111100 0011234566678999999999999999999999999
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
.|+++|+
T Consensus 155 ~Ie~lL~ 161 (162)
T COG0386 155 AIEKLLA 161 (162)
T ss_pred HHHHHhc
Confidence 9998875
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=105.90 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=68.1
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
+.+||+|||+||++||++ |+.+.|.|+++.+++ . ++.++.|+.|.. +..
T Consensus 12 ~~~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~-~----~v~~~~vd~d~~-------------------------~~~ 60 (103)
T cd02985 12 KAKGRLVVLEFALKHSGP-SVKIYPTMVKLSRTC-N----DVVFLLVNGDEN-------------------------DST 60 (103)
T ss_pred HcCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHC-C----CCEEEEEECCCC-------------------------hHH
Confidence 346999999999999998 999999999999988 2 466677776532 112
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
..+++.|+|...|+ +++.++|+++..+.| .+++++...+.
T Consensus 61 ~~l~~~~~V~~~Pt---------------~~~~~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 61 MELCRREKIIEVPH---------------FLFYKDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred HHHHHHcCCCcCCE---------------EEEEeCCeEEEEEeC-CCHHHHHHHHH
Confidence 35678899998885 555599999998866 55666666554
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=108.34 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCC-eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGK-WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK-~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...+|+++| ||+|.|.||+.++|.++.|+ +||++|+..-..|-|..+.-.++.-|++++.. ...|+++|.|
T Consensus 62 ~v~~Gd~iP--D~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---~aeV~GlS~D--- 133 (211)
T KOG0855|consen 62 KVNKGDAIP--DFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---GAEVIGLSGD--- 133 (211)
T ss_pred eeecCCcCC--CcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---CceEEeeccC---
Confidence 567899999 99999999999999999875 88888886665556999999999999999875 5677889964
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+....++|..+++++|..+ .|+.+++.+.+|+...|-.. ...+..||+|+.|.....+...+.++...+
T Consensus 134 -~s~sqKaF~sKqnlPYhLL---SDpk~e~ik~lGa~k~p~gg-------~~~Rsh~if~kg~~k~~ik~~~isPevsvd 202 (211)
T KOG0855|consen 134 -DSASQKAFASKQNLPYHLL---SDPKNEVIKDLGAPKDPFGG-------LPGRSHYIFDKGGVKQLIKNNQISPEVSVD 202 (211)
T ss_pred -chHHHHHhhhhccCCeeee---cCcchhHHHHhCCCCCCCCC-------cccceEEEEecCCeEEEEEecccCccccHH
Confidence 5688999999999999999 89999999999998776421 233558999998877666666777776666
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
+-.+.+.
T Consensus 203 ~a~k~~~ 209 (211)
T KOG0855|consen 203 EALKFLK 209 (211)
T ss_pred HHHHHHh
Confidence 6555543
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-12 Score=102.93 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=79.0
Q ss_pred CC-CeEEEEEecCCCCCCcHHHHHHHH---HHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 180 LG-KWTVIYFGFTHCPDICPDELQKLA---AAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 180 kG-K~vLL~FwatwCp~vC~~elp~L~---~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
.| |+|||+||++||++ |..+.+.+. ++.+.+++ ++.++.|++|.... +..| .. ...
T Consensus 12 ~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~----~~~~~~i~~d~~~~----~~~~--------~~---~~~ 71 (125)
T cd02951 12 DGKKPLLLLFSQPGCPY-CDKLKRDYLNDPAVQAYIRA----HFVVVYINIDGDKE----VTDF--------DG---EAL 71 (125)
T ss_pred cCCCcEEEEEeCCCCHH-HHHHHHHhcCcHHHHHHHHh----heEEEEEEccCCce----eecc--------CC---CCc
Confidence 57 99999999999998 999999885 56666653 47777788764321 1111 11 122
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
....+++.|++...|+ ++++|++ |+++..+.|..+.+.+.+.|..++.+
T Consensus 72 ~~~~l~~~~~v~~~Pt--------------~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 72 SEKELARKYRVRFTPT--------------VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cHHHHHHHcCCccccE--------------EEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 4567899999999988 9999999 89999998888888888888777654
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-12 Score=104.39 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=76.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++||||+|||+||.| |+...|.|+++..+|..+ +.+.-|++|.+ .++
T Consensus 61 ~~PVlVdF~A~WCgP-Ck~l~P~l~~~~~~~~g~----~k~~kvdtD~~----------------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGP-CKMLGPILEELVSEYAGK----FKLYKVDTDEH----------------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCcc-HhHhhHHHHHHHHhhcCe----EEEEEEccccc----------------------------cch
Confidence 689999999999999 999999999999999654 77776776532 456
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+..|+|.+.| ++|+=++|+.+..+.|..+.+.+.+.|++.++
T Consensus 108 a~~Y~I~avP---------------tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 108 AEDYEISAVP---------------TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred Hhhcceeeee---------------EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 8899999999 46777899999999999999999998888775
|
|
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-12 Score=117.26 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=83.5
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
.+...+++++|+++||+||++||++ |..++|.|+++.++|+ +.+++|++|.... ..|+.+
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~-C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-------------~~fp~~ 215 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPY-CHQQAPILQAFEDRYG------IEVLPVSVDGGPL-------------PGFPNA 215 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCcc-HHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-------------ccCCcc
Confidence 3457788999999999999999998 9999999999998873 6677888875321 123333
Q ss_pred cCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 251 TGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 251 ~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+.+..+++.|||..+|+ +||+|++ |++.....|..+.+++.+.+..+..
T Consensus 216 ----~~d~~la~~~gV~~vPt--------------l~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 216 ----RPDAGQAQQLKIRTVPA--------------VFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred ----cCCHHHHHHcCCCcCCe--------------EEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 12245788999999888 9999995 6665556688888888888876643
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=103.89 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=113.1
Q ss_pred CCCCCCCCCeEEE---cCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 155 VGKAAIGGPFKLI---NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 155 vG~~aP~p~f~l~---d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
+..++| +|.-+ |-.-+.++|++++||+|++.|+.-.-..||+.|+-.+.+.+.+|++. +.+||++|+|..
T Consensus 6 ~~~p~p--~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---n~eVig~S~DS~-- 78 (196)
T KOG0852|consen 6 VFKPAP--DFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---NTEVLGISTDSV-- 78 (196)
T ss_pred cCCCCC--CcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---CCeEEEEeccch--
Confidence 344555 87654 44557899999999999999998888889999999999999999876 788899998754
Q ss_pred CHHHHHHHHH---HhC----CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 232 TVEQVREYVK---EFH----PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 232 t~e~l~~~~~---~~~----~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
....+|++ +.+ .+++.+ .|...++++.|||.....+ ..-+..||||++|.++.....+..
T Consensus 79 --fshlAW~ntprk~gGlg~~~iPll---sD~~~~IsrdyGvL~~~~G--------~~lRglfIId~~gi~R~it~NDlp 145 (196)
T KOG0852|consen 79 --FSHLAWINTPRKQGGLGPLNIPLL---SDLNHEISRDYGVLKEDEG--------IALRGLFIIDPDGILRQITINDLP 145 (196)
T ss_pred --hhhhhHhcCchhhCCcCcccccee---eccchhhHHhcCceecCCC--------cceeeeEEEccccceEEeeecccC
Confidence 44444443 332 458888 8999999999999875432 233569999999999987666666
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
...-.++..+++++++
T Consensus 146 vgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 146 VGRSVDETLRLVQAFQ 161 (196)
T ss_pred CCccHHHHHHHHHHHh
Confidence 6677778888887765
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=95.11 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=68.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+|+++||+||++||++ |....|.++++.+.+.+ .+.++.|++|.+ ..
T Consensus 11 ~~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~~----------------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPP-SKELLPLLERLAEEYQG----QFVLAKVNCDAQ----------------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhCC----cEEEEEEeccCC----------------------------HH
Confidence 5889999999999998 99999999999998853 366666665431 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
++++|++...|+ +++++ +|+++..+.|..+.+++.+.|
T Consensus 58 l~~~~~i~~~Pt--------------~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 58 IAQQFGVQALPT--------------VYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred HHHHcCCCCCCE--------------EEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 678899998887 77776 999998888888877766654
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-12 Score=98.86 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=64.3
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
++++||++||+||++||++ |+.+.|.+.++.++++ ++.++.|..|. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~-C~~~~p~l~~la~~~~-----~~~~~~vd~~~---------------------------~ 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPF-SASFRPHFNALSSMFP-----QIRHLAIEESS---------------------------I 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHH-HHhHhHHHHHHHHHhc-----cCceEEEECCC---------------------------C
Confidence 4578999999999999998 9999999999999885 24445554220 1
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
...++++|+|...|+ +++++ +| .+..+.|..+.+.+.+
T Consensus 61 ~~~l~~~~~V~~~PT--------------~~lf~-~g-~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 61 KPSLLSRYGVVGFPT--------------ILLFN-ST-PRVRYNGTRTLDSLAA 98 (100)
T ss_pred CHHHHHhcCCeecCE--------------EEEEc-CC-ceeEecCCCCHHHHHh
Confidence 135678899999997 77776 45 5667778777776654
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=96.68 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+.+.|.|.++++++++. .+.++.++.| . .+
T Consensus 16 ~~~~vvv~F~a~wC~~-Ck~~~p~l~~~~~~~~~~---~~~~~~vd~d-~----------------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGP-CKAVVSLFKKIKNELGDD---LLHFATAEAD-T----------------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHh-HHHHhHHHHHHHHHcCCC---cEEEEEEeCC-C----------------------------HH
Confidence 4899999999999998 999999999999988643 4566666644 1 23
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
++++|+|...|+ +++.++|+++.+..| .+.+.+.+.|.+
T Consensus 63 ~~~~~~v~~~Pt---------------~~~~~~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 63 TLKRYRGKCEPT---------------FLFYKNGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred HHHHcCCCcCcE---------------EEEEECCEEEEEEec-CChHHHHHHHhh
Confidence 568899998884 666689999988766 366665555543
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=103.68 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=107.4
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt~e~l~~ 238 (321)
+|+..|.+|+.|+|+.|+||++||.-.||.|.. -......|+.++++|+++ .+++++..++ .|..+.+++..
T Consensus 16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~-T~~~Y~~l~~L~~ky~~~---Gl~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGL-TESQYTELNELYEKYKDQ---GLEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeEEecCCCCCccHHHhCCeEEEEEEccccccc-chhcchhHHHHHHHHhhC---CeEEEEeccccccCcCCCCcHHHHH
Confidence 899999999999999999999999999999997 777888999999999988 5777777764 22345577777
Q ss_pred HHH-HhCCCceeec-----C-ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 239 YVK-EFHPKLIGLT-----G-SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 239 ~~~-~~~~~~~~l~-----~-~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
++. +++..|+++. | ..++.-++.+.=... + -++ .+.+...-||||++|.++.+|....++.++..+
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~--~----lg~-~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~d 164 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGG--P----LGD-DIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKD 164 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCC--c----ccc-cceeeeEEEeECCCCcEEEeeCCCCCccccchh
Confidence 774 6677776542 2 123333333221100 0 111 455666789999999999999888888888888
Q ss_pred HHHHHH
Q 020776 312 IIKEIK 317 (321)
Q Consensus 312 l~~~L~ 317 (321)
|+++|.
T Consensus 165 Ie~lL~ 170 (171)
T KOG1651|consen 165 IEKLLA 170 (171)
T ss_pred HHHHhc
Confidence 888875
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=96.94 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=70.6
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
..+|+++||+||++||++ |....|.+.++.+++++. ++.++.|++|. .
T Consensus 21 ~~~~~~vlV~F~a~wC~~-C~~~~p~~~~l~~~~~~~---~v~~~~vd~d~----------------------------~ 68 (111)
T cd02963 21 KSFKKPYLIKITSDWCFS-CIHIEPVWKEVIQELEPL---GVGIATVNAGH----------------------------E 68 (111)
T ss_pred ccCCCeEEEEEECCccHh-HHHhhHHHHHHHHHHHhc---CceEEEEeccc----------------------------c
Confidence 346899999999999998 999999999999999753 46666666542 1
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..++++|+|...|+ ++++ ++|+++.++.|..+.+.+.+.|.+
T Consensus 69 ~~l~~~~~V~~~Pt--------------~~i~-~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 69 RRLARKLGAHSVPA--------------IVGI-INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHHHHHcCCccCCE--------------EEEE-ECCEEEEEecCCCCHHHHHHHHhc
Confidence 34678899999886 6666 599999888888887766665543
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=95.96 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=69.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.||++||+||++||++ |....+.+ .++.+.+.+ ++.++.|+++.+ .+.
T Consensus 10 ~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~----~~~~~~vd~~~~------------------------~~~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVT-CKVNEKVVFSDPEVQAALKK----DVVLLRADWTKN------------------------DPE 60 (104)
T ss_pred cCCeEEEEEEcchhHH-HHHHHHHhcCCHHHHHHHhC----CeEEEEEecCCC------------------------CHH
Confidence 5899999999999998 99998887 567777753 477676665421 122
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeEEEEeCCCCChhHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~~~~~~~~l~~~l 312 (321)
...++++|++..+|+ ++++++ +|+++.++.|..+.+++.+.|
T Consensus 61 ~~~~~~~~~i~~~Pt--------------i~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGVFGPPT--------------YLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHHHcCCCCCCE--------------EEEECCCCCCCCcccccccCHHHHHHHh
Confidence 346778899988887 899999 999999988888887766554
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=94.08 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |....|.++++.+++.+ ++.++.|++|.. ..
T Consensus 20 ~~~~vvv~f~~~~C~~-C~~~~p~~~~l~~~~~~----~~~~~~vd~~~~----------------------------~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG----KLTVAKLNIDQN----------------------------PG 66 (109)
T ss_pred CCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhCC----CcEEEEEECCCC----------------------------hh
Confidence 3789999999999998 99999999999999864 366666776531 12
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+.|
T Consensus 67 ~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 67 TAPKYGIRGIPT--------------LLLF-KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred HHHhCCCCcCCE--------------EEEE-eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 467789888886 5666 79999999888888887777776654
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-11 Score=96.49 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+||++||+||.+|||+ |....+.+.+..+ +......++.++.++++. ..+....+....+... + .....+
T Consensus 4 ~~k~~v~~F~~~~C~~-C~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~---~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPY-CKKLEKELFPDND-VARYLKDDFQVIFVNIDD---SRDESEAVLDFDGQKN--V---RLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HH-HHHHHHHHHHHHH-HHCEEHCECEEEECESHS---HHHHHHHHHSHTCHSS--C---HHHHHH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHH-HHHHhhcCeEEEEEecCC---cccccccccccccchh--h---hHHHHH
Confidence 5899999999999998 9988888886543 211111246677777652 2333334444433211 1 345568
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++.|||.++|+ ++++|++|+++..+.|..+++++.+.|
T Consensus 74 l~~~~~v~gtPt--------------~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVNGTPT--------------IVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHTT--SSSE--------------EEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHcCCCccCE--------------EEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999998 999999999999888989888777653
|
... |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=93.84 Aligned_cols=87 Identities=10% Similarity=0.100 Sum_probs=67.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++++||+||++||++ |+...|.+.++.+++.. ++.++.|++|.+. .| ..+
T Consensus 13 ~~~~vvV~F~A~WCgp-Ck~m~p~l~~l~~~~~~----~~~~~~vdvd~~~-----------------------~d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGK-CEILKSVIPMFQESGDI----KKPILTLNLDAED-----------------------VD-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHH-HHhHHHHHHHHHhhhcC----CceEEEEECCccc-----------------------cc-cHH
Confidence 5889999999999998 99999999999877532 3556777777421 01 234
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+++.|+|..+| ++++-++|+++.+..|..+.+.+.+
T Consensus 64 l~~~~~I~~iP---------------T~i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 64 AVKLFDIMSTP---------------VLIGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred HHHHCCCcccc---------------EEEEEECCEEEEEEeCCCCHHHHHh
Confidence 78899999999 4777789999999888777665443
|
|
| >COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-10 Score=92.68 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=107.4
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
...+++|+++| +|++.+.+.+.++++++.||..+|..+.+-..++|..+..++++...++. ++.++.||.
T Consensus 15 g~~~~vGd~ap--~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----~~~Vl~IS~--- 84 (158)
T COG2077 15 GNEPQVGDKAP--DFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----NTVVLCISM--- 84 (158)
T ss_pred CCCCccCCcCC--ceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----CcEEEEEeC---
Confidence 34689999999 99999999999999999999999999999998899999999999988885 467788885
Q ss_pred CCCHHHHHHHHHHhCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 230 RDTVEQVREYVKEFHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
|.|...++|+..+|++ ...+ +.-.+..+.++||+....-+.+ ---.+++|++|.+|+|++.
T Consensus 85 -DLPFAq~RfC~aeGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~-----gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 85 -DLPFAQKRFCGAEGIENVITL--SDFRDRAFGENYGVLINEGPLA-----GLLARAVFVLDENGKVTYS 146 (158)
T ss_pred -CChhHHhhhhhhcCcccceEh--hhhhhhhhhHhhCEEecccccc-----CeeeeEEEEEcCCCcEEEE
Confidence 6799999999999976 4444 2234567889999876432111 1234779999999999986
|
|
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.7e-11 Score=92.29 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=70.0
Q ss_pred CCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 169 HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 169 ~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.+++.+...-..+++++|+||++||++ |....|.+.++.+++++ .+.+..|++|.+
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~~----~~~~~~vd~~~~------------------- 61 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSH-CHDLAPTWREFAKEMDG----VIRIGAVNCGDD------------------- 61 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChH-HHHhHHHHHHHHHHhcC----ceEEEEEeCCcc-------------------
Confidence 344444433345789999999999998 99999999999999863 377777776531
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
..++++|+|...|+ ++++ ++|+.+..+.|..+.+.+.+
T Consensus 62 ---------~~~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 62 ---------RMLCRSQGVNSYPS--------------LYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ---------HHHHHHcCCCccCE--------------EEEE-cCCCCcccCCCCCCHHHHHh
Confidence 24577889988885 4444 88988888888887766543
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=95.89 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=69.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+++|+||++||++ |+...+.|.++++++.+ ++.++.|++|. ...
T Consensus 51 ~~k~vvv~F~a~wC~~-C~~~~~~l~~l~~~~~~----~v~~~~vd~~~----------------------------~~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGP-CRNFAPIFEDVAAERSG----KVRFVKVNTEA----------------------------ERE 97 (139)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhCC----CeEEEEEeCCC----------------------------CHH
Confidence 4899999999999998 99999999999988753 46666665432 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++++|+|...|+ +++ .++|+++..+.|..+.+.+.+.|.++
T Consensus 98 l~~~~~V~~~Pt--------------lii-~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 98 LSARFRIRSIPT--------------IMI-FKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HHHhcCCCccCE--------------EEE-EECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 678899998885 444 46999999988888887777777654
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=94.51 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|||+||++||++ |+...|.|.++.+++.+. +.++-|++|. ..+
T Consensus 13 ~~~~vVV~F~A~WCgp-Ck~m~P~le~la~~~~~~----v~f~kVDvD~----------------------------~~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPV-CMQMDEVLAKIAEDVSNF----AVIYLVDIDE----------------------------VPD 59 (114)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHccCc----eEEEEEECCC----------------------------CHH
Confidence 4689999999999999 999999999999998643 6667677653 245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
++..|+|..+| ++++-++|+.+.+..|..+.
T Consensus 60 la~~~~V~~iP---------------Tf~~fk~G~~v~~~~G~~~~ 90 (114)
T cd02954 60 FNKMYELYDPP---------------TVMFFFRNKHMKIDLGTGNN 90 (114)
T ss_pred HHHHcCCCCCC---------------EEEEEECCEEEEEEcCCCCC
Confidence 78899999999 46777899999997665544
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.2e-10 Score=94.02 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|||.||++||++ |....|.|.++.+++++. +.++-|++|.. .+
T Consensus 22 ~~~lVVvdF~A~WCgp-Ck~m~p~l~~la~~~~~~----~~~~kVDVDe~----------------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDET-CMQMDEVLASVAETIKNF----AVIYLVDITEV----------------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHcCCc----eEEEEEECCCC----------------------------HH
Confidence 5789999999999998 999999999999998643 66677776632 45
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCe-EEEEeCC--------CCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKME-FVKFFGK--------NNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~-Iv~~~~~--------~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ ++++-++|+ .+++..| ..+.+++.+.++..++.-
T Consensus 69 la~~y~I~~~~t--------------~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 69 FNTMYELYDPCT--------------VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred HHHHcCccCCCc--------------EEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 688889886665 666778888 6777766 356667777777766544
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-10 Score=88.40 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=62.9
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
.+|+ +||+||++||++ |....|.+.++.+.++. .++.+..|++|.+ .
T Consensus 15 ~~~~-~lv~f~a~wC~~-C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~----------------------------~ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPA-CQQLQPEWEEFADWSDD---LGINVAKVDVTQE----------------------------P 61 (101)
T ss_pred hCCC-EEEEEECCCCHH-HHHHhHHHHHHHHhhcc---CCeEEEEEEccCC----------------------------H
Confidence 3566 579999999998 99999999999987653 2566666654421 2
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
.+++.|+|...|+ +++ .++|++ ..+.|..+.+++.+.|.
T Consensus 62 ~~~~~~~i~~~Pt--------------~~~-~~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 62 GLSGRFFVTALPT--------------IYH-AKDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred hHHHHcCCcccCE--------------EEE-eCCCCE-EEecCCCCHHHHHHHHh
Confidence 3577899999886 555 488986 56778777776665543
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-10 Score=88.33 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=64.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|+||++||++ |+.+.|.+++++++++++ +..+.+..++++. ...
T Consensus 14 ~~~~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~~~~vd~~~----------------------------~~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGH-CKKLEPVWNEVGAELKSS-GSPVRVGKLDATA----------------------------YSS 63 (104)
T ss_pred cCCeEEEEEECCCCHH-HHhhChHHHHHHHHHHhc-CCcEEEEEEECcc----------------------------CHh
Confidence 4679999999999998 999999999999999754 3456655555431 124
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++.|+|...|+ +++++ +|. ...+.|..+.+.+.+.+++
T Consensus 64 ~~~~~~I~~~Pt--------------~~l~~-~~~-~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 64 IASEFGVRGYPT--------------IKLLK-GDL-AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred HHhhcCCccccE--------------EEEEc-CCC-ceeecCCCCHHHHHHHHHh
Confidence 577899998887 77774 454 4556677777766665544
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-10 Score=89.03 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|+||++||++ |+...|.++++.+++++. ..+.++.|.++.+ ....
T Consensus 16 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~--------------------------~~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGH-CKKMKPEFTKAATELKED--GKGVLAAVDCTKP--------------------------EHDA 66 (104)
T ss_pred hCCCEEEEEECCCCHH-HHHhCHHHHHHHHHHhhC--CceEEEEEECCCC--------------------------ccHH
Confidence 4779999999999998 999999999999999753 2355555554421 1234
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+.+.|++...|+ +++.++|+++..+.|..+.+.+.+
T Consensus 67 ~~~~~~i~~~Pt---------------~~~~~~g~~~~~~~g~~~~~~l~~ 102 (104)
T cd02997 67 LKEEYNVKGFPT---------------FKYFENGKFVEKYEGERTAEDIIE 102 (104)
T ss_pred HHHhCCCccccE---------------EEEEeCCCeeEEeCCCCCHHHHHh
Confidence 678899988884 566678998888888888776654
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-10 Score=87.63 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=63.7
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
+++||+||++||++ |+...|.++++++++++. ...+.++.|+.|.+ ..++
T Consensus 17 ~~~lv~f~a~wC~~-C~~~~p~~~~~~~~~~~~-~~~~~~~~vd~~~~----------------------------~~~~ 66 (102)
T cd03005 17 GNHFVKFFAPWCGH-CKRLAPTWEQLAKKFNNE-NPSVKIAKVDCTQH----------------------------RELC 66 (102)
T ss_pred CCEEEEEECCCCHH-HHHhCHHHHHHHHHHhcc-CCcEEEEEEECCCC----------------------------hhhH
Confidence 35999999999998 999999999999999752 12466666665421 2456
Q ss_pred HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 262 RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 262 ~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+.|++...|+ ++++ ++|+.+..+.|..+.+++.+
T Consensus 67 ~~~~v~~~Pt--------------~~~~-~~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 67 SEFQVRGYPT--------------LLLF-KDGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred hhcCCCcCCE--------------EEEE-eCCCeeeEeeCCCCHHHHHh
Confidence 7889888886 6667 68888888888887666544
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=92.92 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
+...+|+.+| +|+..+..| .+.+.||.| -|.+|+-......|+|..|+..+.++..+|.++ ++..|+.|+|.-
T Consensus 4 ~~l~lgd~~P--Nfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---nvKlialS~d~v 77 (224)
T KOG0854|consen 4 PRLRLGDTVP--NFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---NVKLIALSVDDV 77 (224)
T ss_pred CcccccCcCC--Ccccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---CceEEEeehhhH
Confidence 4567899999 999988888 588999876 588887777777779999999999999999887 688889998754
Q ss_pred CCC---HHHHHHHHHHhC--CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 230 RDT---VEQVREYVKEFH--PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 230 ~Dt---~e~l~~~~~~~~--~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
++. .++++.|++... ++|+++ .|..++++-.|+..-...... .-.-...+++|+||++.+|+-.+....+
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPII---aD~~rela~~l~MlD~~e~~~--~~~~~T~Ravfvi~pdkKirLs~lYP~t 152 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPII---ADPNRELAFLLNMLDPEEKKN--IGDGKTVRAVFVIDPDKKIRLSFLYPST 152 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCee---cCCchhhhhhhcccCHhHcCC--CCCCceEEEEEEECCCceEEEEEEcccc
Confidence 332 234455555555 788888 788899998888653221111 1111345789999999999987666666
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.....++|.+.+..++
T Consensus 153 tGRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 153 TGRNFDEILRVIDSLQ 168 (224)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 6666666766666543
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=85.04 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+++|+||++||+. |....+.|.++.+++.+ ++.++.|++|. ..+
T Consensus 12 ~~~~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~~----~v~~~~id~d~----------------------------~~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGP-CRTLKPILNKVIDEFDG----AVHFVEIDIDE----------------------------DQE 58 (97)
T ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHHHHhCC----ceEEEEEECCC----------------------------CHH
Confidence 5789999999999997 99999999999988863 36666666542 124
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++.|++...|+ ++++ ++|+++..+.+..+.+++.+.|
T Consensus 59 l~~~~~v~~vPt--------------~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 59 IAEAAGIMGTPT--------------VQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHHHCCCeeccE--------------EEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 677889988887 7777 4899999888877776655544
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-10 Score=87.14 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|+||++||++ |+...+.++++.+.++.+ + ++.++.+.+|. ...
T Consensus 12 ~~~~~~i~f~~~~C~~-c~~~~~~~~~~~~~~~~~-~-~~~~~~~d~~~----------------------------~~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGH-CKNLAPEYEKLAKELKGD-P-DIVLAKVDATA----------------------------EKD 60 (102)
T ss_pred cCCcEEEEEECCCCHH-HHhhChHHHHHHHHhccC-C-ceEEEEEEccc----------------------------hHH
Confidence 6899999999999998 999999999999988654 1 46655555431 245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+.+.|++...|+ ++++++++. +..+.|..+.+++.+.|.+
T Consensus 61 ~~~~~~i~~~P~--------------~~~~~~~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 61 LASRFGVSGFPT--------------IKFFPKGKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred HHHhCCCCcCCE--------------EEEecCCCc-ceeecCCCCHHHHHHHHHh
Confidence 678899988887 889998887 5667777787777666655
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-10 Score=87.22 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|.||++||++ |+...|.++++.+++.. .+.+..|++|. ...
T Consensus 18 ~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~~----~~~~~~vd~~~----------------------------~~~ 64 (104)
T cd03004 18 RKEPWLVDFYAPWCGP-CQALLPELRKAARALKG----KVKVGSVDCQK----------------------------YES 64 (104)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CcEEEEEECCc----------------------------hHH
Confidence 4679999999999998 99999999999999853 36666666542 235
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC-hhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND-VNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~-~~~l~~ 310 (321)
+++.|+|...|+ +++++++|+.+..+.|..+ .+++.+
T Consensus 65 ~~~~~~i~~~Pt--------------~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 65 LCQQANIRAYPT--------------IRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred HHHHcCCCcccE--------------EEEEcCCCCCceEccCCCCCHHHHHh
Confidence 678899999887 7777766588888877765 665544
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.4e-10 Score=88.38 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.|+++||+||++||++ |....|.+.++.+++.. .+.++.|++|.+ ....
T Consensus 17 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~a~~~~~----~~~~~~v~~~~~--------------------------~~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGH-CKNLKPEYAKAAKELDG----LVQVAAVDCDED--------------------------KNKP 65 (109)
T ss_pred CCCeEEEEEECCCCHH-HHhhChHHHHHHHHhcC----CceEEEEecCcc--------------------------ccHH
Confidence 4789999999999998 99999999999998863 366777776531 1245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCC----eEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM----EFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG----~Iv~~~~~~~~~~~l~~~l 312 (321)
+.+.|++...|+ ++++++++ .+...|.|..+.+.+.+.|
T Consensus 66 ~~~~~~i~~~Pt--------------~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 66 LCGKYGVQGFPT--------------LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHHcCCCcCCE--------------EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 677899998887 88888887 3455677777777665543
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=86.96 Aligned_cols=75 Identities=25% Similarity=0.293 Sum_probs=61.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|.++|+|+++||+| |+...|.+.++..+|. ++.++-|++|. ...
T Consensus 20 ~~kliVvdF~a~wCgP-Ck~i~P~~~~La~~y~-----~v~Flkvdvde----------------------------~~~ 65 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGP-CKAIAPKFEKLAEKYP-----DVVFLKVDVDE----------------------------LEE 65 (106)
T ss_pred CCCeEEEEEECCCCcc-hhhhhhHHHHHHHHCC-----CCEEEEEeccc----------------------------CHh
Confidence 3699999999999999 9999999999999996 46677777652 256
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
+++.|+|..+|+ |++-++|+.+..+.|..
T Consensus 66 ~~~~~~V~~~PT---------------f~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 66 VAKEFNVKAMPT---------------FVFYKGGEEVDEVVGAN 94 (106)
T ss_pred HHHhcCceEeeE---------------EEEEECCEEEEEEecCC
Confidence 788999999995 55559999998875543
|
|
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=82.64 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |....+.++++.+++.+ ++.++.|..|.. ..+
T Consensus 14 ~~~vvi~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~vd~~~~----------------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGP-CKMIAPILEELAKEYEG----KVKFVKLNVDEN----------------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHH-HHHhCHHHHHHHHHhcC----CeEEEEEECCCC----------------------------HHH
Confidence 579999999999998 99999999999988853 377776665421 245
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
.++|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+.
T Consensus 61 ~~~~~v~~~P~--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 61 AAKYGIRSIPT--------------LLLF-KNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHHcCCCcCCE--------------EEEE-eCCcEeeeecCCCCHHHHHHHHHhh
Confidence 67889988886 6666 6888888877777777776666553
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=86.26 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcC--CcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSG--IDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g--~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.++++||+||++||++ |+...|.++++.++++++.. .++.+..|++|. .
T Consensus 17 ~~~~vlv~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~----------------------------~ 67 (108)
T cd02996 17 SAELVLVNFYADWCRF-SQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK----------------------------E 67 (108)
T ss_pred cCCEEEEEEECCCCHH-HHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC----------------------------C
Confidence 3689999999999998 99999999999998865311 136666566542 1
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLAD 310 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~ 310 (321)
..++++|+|...|+ ++++ ++|++ ...+.|..+.+.+.+
T Consensus 68 ~~l~~~~~v~~~Pt--------------l~~~-~~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 68 SDIADRYRINKYPT--------------LKLF-RNGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred HHHHHhCCCCcCCE--------------EEEE-eCCcCcceecCCCCCHHHHHh
Confidence 35688899999886 5555 78884 466777777776654
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=86.69 Aligned_cols=83 Identities=6% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||.||++||++ |+...|.+.++.+++++ .+.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~-Ck~l~p~~~~la~~~~~----~v~~~~Vd~d~~----------------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQ-SQAARQEFEQVAQKLSD----QVLFVAINCWWP----------------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEECCCC----------------------------hH
Confidence 4689999999999998 99999999999999964 366677776532 23
Q ss_pred HH-HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IA-RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a-~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
++ +.|+|...|+ +.++ ++|+....|.|..+.+.+..
T Consensus 75 l~~~~~~I~~~PT--------------l~lf-~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 75 KCRKQKHFFYFPV--------------IHLY-YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred HHHHhcCCcccCE--------------EEEE-ECCccceEEeCCCCHHHHHh
Confidence 45 5799998886 4444 78888777878888776654
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=96.03 Aligned_cols=92 Identities=15% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+...|.++++.+++++ .+.+..|++|. ...
T Consensus 51 ~~~~vlV~FyApWC~~-Ck~~~P~~e~la~~~~~----~v~~~~VD~~~----------------------------~~~ 97 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSH-CRKMAPAWERLAKALKG----QVNVADLDATR----------------------------ALN 97 (224)
T ss_pred CCCCEEEEEECCCChH-HHHHHHHHHHHHHHcCC----CeEEEEecCcc----------------------------cHH
Confidence 3589999999999998 99999999999999863 35554444321 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ +++++ +|+++.++.+..+.+++.+.+.+.+++.
T Consensus 98 l~~~~~I~~~PT--------------l~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 98 LAKRFAIKGYPT--------------LLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred HHHHcCCCcCCE--------------EEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 678899999887 77776 8999888888889999988888877654
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-09 Score=89.57 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=38.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
+++++||+||++||++ |....|.++++.+++.+. ++.++.|++|.
T Consensus 46 ~~~~vvV~Fya~wC~~-Ck~l~p~l~~la~~~~~~---~v~f~~VDvd~ 90 (152)
T cd02962 46 KRVTWLVEFFTTWSPE-CVNFAPVFAELSLKYNNN---NLKFGKIDIGR 90 (152)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcccC---CeEEEEEECCC
Confidence 4689999999999998 999999999999998643 58888888763
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-09 Score=85.17 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.||++||.||++||++ |+...|.+.++.+++++. ++.++.|.+|.+ ...
T Consensus 20 ~~k~vlv~f~a~wC~~-C~~~~~~~~~la~~~~~~---~~~~~~vd~d~~---------------------------~~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPF-CQAMEASYEELAEKLAGS---NVKVAKFNADGE---------------------------QRE 68 (109)
T ss_pred cCCCEEEEEECCCCHH-HHHHhHHHHHHHHHhccC---CeEEEEEECCcc---------------------------chh
Confidence 5799999999999998 999999999999999743 577777776631 012
Q ss_pred HHH-HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC-CChhHHHH
Q 020776 260 IAR-AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN-NDVNSLAD 310 (321)
Q Consensus 260 ~a~-~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~-~~~~~l~~ 310 (321)
+++ .|++...|+ ++++++++.....|.+. .+.+.+..
T Consensus 69 ~~~~~~~v~~~Pt--------------i~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 69 FAKEELQLKSFPT--------------ILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred hHHhhcCCCcCCE--------------EEEEcCCCCCceeccCCCCCHHHHHh
Confidence 333 478888887 88888887777777664 56665543
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-09 Score=88.49 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=61.7
Q ss_pred eccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 175 TEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 175 sLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
..+..++|+|||+||++||++ |..+.|.+.+.......+ .++ +.|.+|.+.+.
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~-C~~~~~~~~~~~~~~~~~--~~f--v~v~vd~~~~~---------------------- 65 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGA-CKALKPKFAESKEISELS--HNF--VMVNLEDDEEP---------------------- 65 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHH-HHHHHHHHhhhHHHHhhc--CcE--EEEEecCCCCc----------------------
Confidence 344557899999999999998 999999999976655422 234 44565532110
Q ss_pred HHHHHHHHHcCceE--eecCCCCCCcccccceEEEEEcCCCeEEEE---eCCCCChhHHHHHHHHHHH
Q 020776 255 DEIRNIARAYRVYY--MKTAEEDSDYLVDHSIVMYLMSPKMEFVKF---FGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 255 d~~~~~a~~ygv~~--~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~---~~~~~~~~~l~~~l~~~L~ 317 (321)
....|++.+ .|+ ++++|++|+++.+ ..+..+.+...+.|.....
T Consensus 66 -----~~~~~~~~g~~vPt--------------~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 66 -----KDEEFSPDGGYIPR--------------ILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred -----hhhhcccCCCccce--------------EEEECCCCCCchhhccCCCCccccccCCCHHHHHh
Confidence 012344432 565 9999999999874 3344444444444444443
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=97.30 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+-+||||+||++||++ |..-+|.|.++..+|+.+ +.+.-|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~-c~qL~p~Lekla~~~~G~----f~LakvN~D~~----------------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGP-CKQLTPTLEKLAAEYKGK----FKLAKVNCDAE----------------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCch-HHHHHHHHHHHHHHhCCc----eEEEEecCCcc----------------------------hh
Confidence 5679999999999998 999999999999999754 77777777643 45
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++.+|||..+|+ +| .-++|+-+.-|.|....+.+.+.|.+.+
T Consensus 89 vAaqfgiqsIPt--------------V~-af~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 89 VAAQFGVQSIPT--------------VY-AFKDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred HHHHhCcCcCCe--------------EE-EeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence 688999999996 44 4589999999988888888888777665
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-09 Score=80.34 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=70.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||+.||++ |....|.+.++.+++.+ ++.++.|+.+. ...
T Consensus 16 ~~~~vvv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~v~~~~vd~~~----------------------------~~~ 62 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPP-CKAFKPILEKLAKEYKD----NVKFAKVDCDE----------------------------NKE 62 (103)
T ss_dssp TSSEEEEEEESTTSHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTT----------------------------SHH
T ss_pred cCCCEEEEEeCCCCCc-cccccceeccccccccc----ccccchhhhhc----------------------------cch
Confidence 3799999999999998 99999999999999975 46666666442 145
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++.|++...|+ +++-++|+....+.+..+.+.+.+.|++
T Consensus 63 l~~~~~v~~~Pt---------------~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 63 LCKKYGVKSVPT---------------IIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHHHTTCSSSSE---------------EEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred hhhccCCCCCCE---------------EEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 688899998885 4555788888888888898888887765
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.2e-09 Score=80.17 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+...+.+.++.+++. ++.++.|+.|. ...
T Consensus 17 ~~~~vli~f~~~~C~~-C~~~~~~l~~l~~~~~-----~~~~~~vd~~~----------------------------~~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGP-CKRIAPFYEECSKEYT-----KMVFVKVDVDE----------------------------LSE 62 (98)
T ss_pred cCCeEEEEEECCCCHH-HHHHhHHHHHHHHHcC-----CcEEEEEECcc----------------------------hHH
Confidence 4789999999999998 9999999999988653 35555555431 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
++++|++...|+ +++.++|+++..+.|. ..+++
T Consensus 63 ~~~~~~v~~~Pt---------------~~~~~~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 63 VAEKENITSMPT---------------FKVFKNGSVVDTLLGA-NDEAL 95 (98)
T ss_pred HHHHCCCceeeE---------------EEEEeCCeEEEEEeCC-CHHHh
Confidence 688899999885 5666899999988664 44433
|
|
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=82.66 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCC--CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFGFTH--CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~Fwatw--Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.|.+++|.||++| ||+ |....|.|.++.++|.++ +.++-|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~-c~~i~P~leela~e~~~~----v~f~kVdid~~---------------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPE-VLDVAVVLPELLKAFPGR----FRAAVVGRADE---------------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcc-hhhhHhHHHHHHHHCCCc----EEEEEEECCCC----------------------------
Confidence 5789999999997 998 999999999999999643 66666665421
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
.+++..|+|..+|+ +++-++|+++....|..+.+++.
T Consensus 73 ~~la~~f~V~sIPT---------------li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 73 QALAARFGVLRTPA---------------LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHHHHcCCCcCCE---------------EEEEECCEEEEEEeCccCHHHHh
Confidence 36789999999994 67778999999988888877664
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=79.13 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |+...+.|.++.+++. .++.++.|+.+. ..++
T Consensus 14 ~~~v~v~f~~~~C~~-C~~~~~~l~~l~~~~~----~~i~~~~vd~~~----------------------------~~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEP-CKQMNQVFEELAKEAF----PSVLFLSIEAEE----------------------------LPEI 60 (97)
T ss_pred CCEEEEEEECCCCHH-HHHHhHHHHHHHHHhC----CceEEEEEcccc----------------------------CHHH
Confidence 799999999999998 9999999999998872 246666554321 1346
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
.+.|++...|+ ++++ ++|+++.++.|. +.+++.+.
T Consensus 61 ~~~~~i~~~Pt--------------~~~~-~~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 61 SEKFEITAVPT--------------FVFF-RNGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred HHhcCCccccE--------------EEEE-ECCEEEEEEeCC-CHHHHHHh
Confidence 78899998886 5555 589999887663 44544443
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=83.01 Aligned_cols=90 Identities=8% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCeEEEEEecCCCCC-CcH--HHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 181 GKWTVIYFGFTHCPD-ICP--DELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 181 GK~vLL~FwatwCp~-vC~--~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
..++|++||++||++ -|+ ...|.|.++..++-+. .++.++-|++|.+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--~~v~~~kVD~d~~---------------------------- 76 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--KGIGFGLVDSKKD---------------------------- 76 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--CCCEEEEEeCCCC----------------------------
Confidence 468999999999963 499 7788899998888322 1477777776532
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
.+++++|||..+|+ +++-++|+++. +.|..+.+.+.+.|.+++
T Consensus 77 ~~La~~~~I~~iPT---------------l~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 77 AKVAKKLGLDEEDS---------------IYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHHcCCccccE---------------EEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 56789999999995 44557999887 778888888888887765
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-08 Score=80.29 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|.||++||++ |+...+.+.++.++++.. .++.++.|+.+.+ ...+
T Consensus 18 ~~~~~v~f~a~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~---------------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGH-CKNLAPEYEKLAAVFANE--DDVVIAKVDADEA---------------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHH-HHhhChHHHHHHHHhCCC--CCEEEEEEECCCc---------------------------chhh
Confidence 579999999999998 999999999999998632 2466666654421 1355
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
.+.|++...|+ +++++++|+....+.+..+.+++.+
T Consensus 68 ~~~~~i~~~P~--------------~~~~~~~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 68 AKKYGVSGFPT--------------LKFFPKGSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred HHhCCCCCcCE--------------EEEEeCCCCCccccCCccCHHHHHh
Confidence 77888888887 8888888777777777777766654
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=104.40 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=68.4
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+..+||+|+|+||++||++ |+.+-+.. .++.++++ ++.++-|++|.+
T Consensus 470 a~~~gK~VlVdF~A~WC~~-Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~------------------------ 519 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQQALA-----DTVLLQADVTAN------------------------ 519 (571)
T ss_pred HHhcCCcEEEEEECCcCHh-HHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCC------------------------
Confidence 3456899999999999998 99876654 55666653 355555665421
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE--EEeCCCCChhHHHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV--KFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~~~~~~~~~~~l~~~l~~ 314 (321)
.++..++.++|++...|+ ++++|++|+++ .++.|..+.+++.+.+++
T Consensus 520 ~~~~~~l~~~~~v~g~Pt--------------~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 520 NAEDVALLKHYNVLGLPT--------------ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred ChhhHHHHHHcCCCCCCE--------------EEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 123356788899999887 89999999985 567787887777666655
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=77.69 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |+...|.+.++.+++.. .+.+..+++|. ...+
T Consensus 18 ~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~id~~~----------------------------~~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGH-CKNLAPEWKKAAKALKG----IVKVGAVDADV----------------------------HQSL 64 (103)
T ss_pred CCcEEEEEECCCCHH-HHHHhHHHHHHHHHhcC----CceEEEEECcc----------------------------hHHH
Confidence 567999999999998 99999999999988863 36566565432 2346
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
.+.|++...|+ +++++++......+.+..+.+++.+.
T Consensus 65 ~~~~~i~~~P~--------------~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 65 AQQYGVRGFPT--------------IKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred HHHCCCCccCE--------------EEEECCCCcceeecCCCCCHHHHHHH
Confidence 78899988886 77776553555567777887766554
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.2e-09 Score=79.47 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|.||++||++ |....+.+.++.+.++.+ ..+.++.|+.|. ...
T Consensus 14 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~----------------------------~~~ 62 (101)
T cd02961 14 DSKDVLVEFYAPWCGH-CKALAPEYEKLAKELKGD--GKVVVAKVDCTA----------------------------NND 62 (101)
T ss_pred CCCcEEEEEECCCCHH-HHhhhHHHHHHHHHhccC--CceEEEEeeccc----------------------------hHH
Confidence 4569999999999998 999999999999988511 246666555431 245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+.+.|++...|+ +++++++|..+..+.+..+.+++.+
T Consensus 63 ~~~~~~i~~~Pt--------------~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 63 LCSEYGVRGYPT--------------IKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred HHHhCCCCCCCE--------------EEEEcCCCcccccCCCCcCHHHHHh
Confidence 678899988887 8999988777777777777666554
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=80.70 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=47.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++++||+||++||++ |....|.++++.+++++. ...+.+..|+++. +....+
T Consensus 19 ~~~vvV~f~a~wC~~-C~~~~~~~~~la~~~~~~-~~~v~~~~vd~~~--------------------------~~~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGH-CRAFAPTWKKLARDLRKW-RPVVRVAAVDCAD--------------------------EENVAL 70 (114)
T ss_pred CCeEEEEEECCCCHH-HHHHhHHHHHHHHHHHhc-CCceEEEEEeccc--------------------------hhhHHH
Confidence 479999999999998 999999999999999754 1235555454331 223456
Q ss_pred HHHcCceEeec
Q 020776 261 ARAYRVYYMKT 271 (321)
Q Consensus 261 a~~ygv~~~p~ 271 (321)
.+.|++...|+
T Consensus 71 ~~~~~i~~~Pt 81 (114)
T cd02992 71 CRDFGVTGYPT 81 (114)
T ss_pred HHhCCCCCCCE
Confidence 78889988886
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-08 Score=76.83 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=71.0
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~~ 238 (321)
+|++.|.+|+.++|++++||++||.-.|+.|+. -. +...|++++++|+++ .+.++++.++. |.++.+++++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~-t~-qy~~L~~L~~ky~~~---gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGY-TK-QYKQLNELYEKYKDK---GLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTT-HH-HHHHHHHHHHHHGGG---TEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCC-cc-ccHHHHHHHHHHhcC---CeEEEeeehHHhccccCCCHHHHHH
Confidence 689999999999999999999999999999996 66 999999999999987 57788887653 3457788999
Q ss_pred HHHH-hCCCceee
Q 020776 239 YVKE-FHPKLIGL 250 (321)
Q Consensus 239 ~~~~-~~~~~~~l 250 (321)
|+.. ++++|++.
T Consensus 78 ~~~~~~~~~F~vf 90 (108)
T PF00255_consen 78 FCKEKFGVTFPVF 90 (108)
T ss_dssp HHCHCHT-SSEEB
T ss_pred HHHhccCCcccce
Confidence 8888 68888765
|
11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C .... |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-08 Score=95.32 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=74.6
Q ss_pred EcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 167 ~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
.+.+.+.+.-.--+++.+||.||++||++ |+...|.+.++...+++. +.++.+..|.++.
T Consensus 35 ~~l~~~~f~~~i~~~~~~lv~f~a~wC~~-Ck~~~p~~~~~a~~~~~~-~~~i~~~~vd~~~------------------ 94 (477)
T PTZ00102 35 TVLTDSTFDKFITENEIVLVKFYAPWCGH-CKRLAPEYKKAAKMLKEK-KSEIVLASVDATE------------------ 94 (477)
T ss_pred EEcchhhHHHHHhcCCcEEEEEECCCCHH-HHHhhHHHHHHHHHHHhc-CCcEEEEEEECCC------------------
Confidence 34444444322235789999999999998 999999999999888765 3456666555432
Q ss_pred ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 247 LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 247 ~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
...+.++|+|...|+ +++++..+.+ .|.|..+.+.+.+.+.+.+
T Consensus 95 ----------~~~l~~~~~i~~~Pt--------------~~~~~~g~~~--~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 95 ----------EMELAQEFGVRGYPT--------------IKFFNKGNPV--NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred ----------CHHHHHhcCCCcccE--------------EEEEECCceE--EecCCCCHHHHHHHHHHhh
Confidence 145688899999887 7777665544 6667888888888777764
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=80.18 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |....|.++++.+++. ++.++-|++| .. .+
T Consensus 24 ~~~vvv~F~a~~c~~-C~~l~~~l~~la~~~~-----~v~f~~vd~~----------------------------~~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPR-CKILDSHLEELAAKYP-----ETKFVKINAE----------------------------KA-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCc-HHHHHHHHHHHHHHCC-----CcEEEEEEch----------------------------hh-HH
Confidence 589999999999998 9999999999998884 3444544432 12 56
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+++|+|...| ++++-++|+++..+.|
T Consensus 69 ~~~~~i~~~P---------------t~~~f~~G~~v~~~~G 94 (113)
T cd02957 69 VNYLDIKVLP---------------TLLVYKNGELIDNIVG 94 (113)
T ss_pred HHhcCCCcCC---------------EEEEEECCEEEEEEec
Confidence 8889999888 4677789999988755
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=76.75 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=61.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++.++|+||++||++ |+...|.|.++.+++ + .+.++.|++|. ..+
T Consensus 21 ~~~~vvv~f~a~wC~~-C~~~~~~l~~la~~~-~----~i~~~~vd~d~----------------------------~~~ 66 (113)
T cd02975 21 NPVDLVVFSSKEGCQY-CEVTKQLLEELSELS-D----KLKLEIYDFDE----------------------------DKE 66 (113)
T ss_pred CCeEEEEEeCCCCCCC-hHHHHHHHHHHHHhc-C----ceEEEEEeCCc----------------------------CHH
Confidence 3567889999999998 999999999998776 2 36666666552 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCC---CeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK---MEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d---G~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|++...|+ +++.+.+ |.+ .+.|..+..++.+.|..++
T Consensus 67 l~~~~~v~~vPt--------------~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 67 KAEKYGVERVPT--------------TIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred HHHHcCCCcCCE--------------EEEEeCCeecceE--EEEecCchHHHHHHHHHHH
Confidence 678899999886 5555542 333 3446666667777666655
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=78.09 Aligned_cols=92 Identities=12% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC----CCHHHHHHHHHHhCCCceeecCChH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER----DTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~----Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
.|+.++|+|+++|||+ |+...|.|.++.++. ++.+..|++|.+. .+.+++.+|.+.++..
T Consensus 22 ~~~~~iv~f~~~~Cp~-C~~~~P~l~~~~~~~------~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~--------- 85 (122)
T TIGR01295 22 KKETATFFIGRKTCPY-CRKFSGTLSGVVAQT------KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP--------- 85 (122)
T ss_pred cCCcEEEEEECCCChh-HHHHhHHHHHHHHhc------CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc---------
Confidence 4788999999999998 999999999998873 2445666776421 1112344444444311
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC-CChhHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN-NDVNSLAD 310 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~-~~~~~l~~ 310 (321)
+++.++| ++++=++|+.+.+..|. ...+++.+
T Consensus 86 --------~~i~~~P---------------T~v~~k~Gk~v~~~~G~~~~~~~l~~ 118 (122)
T TIGR01295 86 --------TSFMGTP---------------TFVHITDGKQVSVRCGSSTTAQELQD 118 (122)
T ss_pred --------ccCCCCC---------------EEEEEeCCeEEEEEeCCCCCHHHHHH
Confidence 2344566 46777899999887663 34444443
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=77.07 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||.|+++||++ |+..-|.|.++..+|++. +.++-|++| +..+
T Consensus 13 ~~klVVVdF~a~WC~p-Ck~mdp~l~ela~~~~~~----~~f~kVDVD----------------------------ev~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAV-CLQLDDILSKTSHDLSKM----ASIYLVDVD----------------------------KVPV 59 (114)
T ss_pred CCCEEEEEEeCCCChh-HHHHHHHHHHHHHHccCc----eEEEEEecc----------------------------ccHH
Confidence 6899999999999998 999999999999999631 666666654 2355
Q ss_pred HHHHcCceEeec
Q 020776 260 IARAYRVYYMKT 271 (321)
Q Consensus 260 ~a~~ygv~~~p~ 271 (321)
+++.|+|...|+
T Consensus 60 va~~y~I~amPt 71 (114)
T cd02986 60 YTQYFDISYIPS 71 (114)
T ss_pred HHHhcCceeCcE
Confidence 788899988886
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=76.92 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=54.0
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-.+|+|||+|+++||++ |+..-+.. .++.+.+.+ ++++|-|++|. .++..+.+.+
T Consensus 11 Ak~~~KpVll~f~a~WC~~-Ck~me~~~f~~~~V~~~l~~----~fv~VkvD~~~---~~~~~~~~~~------------ 70 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHW-CHVMEHESFEDEEVAAILNE----NFVPIKVDREE---RPDVDKIYMN------------ 70 (124)
T ss_pred HHHcCCeEEEEEccCCCHh-HHHHHHHccCCHHHHHHHhC----CEEEEEEeCCc---CcHHHHHHHH------------
Confidence 3446899999999999998 99776522 245554433 36555555432 2332222211
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
.....|++.+.|+ ++++|++|++++..
T Consensus 71 -----~~~~~~~~~G~Pt--------------~vfl~~~G~~~~~~ 97 (124)
T cd02955 71 -----AAQAMTGQGGWPL--------------NVFLTPDLKPFFGG 97 (124)
T ss_pred -----HHHHhcCCCCCCE--------------EEEECCCCCEEeee
Confidence 1123568888787 99999999999775
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.4e-07 Score=69.66 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||+. |....+.++++.++. . ++.++.|+.+. ..++
T Consensus 10 ~~~~ll~~~~~~C~~-C~~~~~~~~~~~~~~--~---~~~~~~i~~~~----------------------------~~~~ 55 (93)
T cd02947 10 AKPVVVDFWAPWCGP-CKAIAPVLEELAEEY--P---KVKFVKVDVDE----------------------------NPEL 55 (93)
T ss_pred CCcEEEEEECCCChh-HHHhhHHHHHHHHHC--C---CceEEEEECCC----------------------------ChhH
Confidence 389999999999998 999999999998772 2 46666666542 1345
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
.+.|++...|+ ++++ .+|+++..+.+..+.+.+.+.
T Consensus 56 ~~~~~v~~~P~--------------~~~~-~~g~~~~~~~g~~~~~~l~~~ 91 (93)
T cd02947 56 AEEYGVRSIPT--------------FLFF-KNGKEVDRVVGADPKEELEEF 91 (93)
T ss_pred HHhcCcccccE--------------EEEE-ECCEEEEEEecCCCHHHHHHH
Confidence 67788888885 4544 678888887776666555544
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=74.24 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=69.0
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHH-H--HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQK-L--AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~-L--~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-++|+++|+|++.||++ |...... | .++.+.+.+ +.+.+ .+|..
T Consensus 13 Ak~~~K~llv~~~~~~c~~-c~~~~~~vl~~~~v~~~l~~----~~v~~--~~d~~------------------------ 61 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFD-SQVLNRDLWSNESVKEFIRE----NFIFW--QCDID------------------------ 61 (114)
T ss_pred HHhhCceEEEEEecCCcch-HHHHHHHHcCCHHHHHHHHh----CEEEE--EecCC------------------------
Confidence 3346899999999999998 9876543 2 223444432 24433 33321
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+..+++..|++...|+ +++||+ +|+++....|..+++++...|.+.+..
T Consensus 62 ~~e~~~~~~~~~~~~~P~--------------~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 62 SSEGQRFLQSYKVDKYPH--------------IAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred CccHHHHHHHhCccCCCe--------------EEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 112345677788888887 999999 899999999999999999999887754
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=69.26 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=57.5
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHH
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARA 263 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ 263 (321)
.+..||++||++ |....+.|+++.++++. .+.++.|++|.+ .+.++.
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~~----~~~~~~vd~~~~----------------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPY-CPAAKRVVEEVAKEMGD----AVEVEYINVMEN----------------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcc-hHHHHHHHHHHHHHhcC----ceEEEEEeCccC----------------------------HHHHHH
Confidence 467899999998 99999999999988853 366666665421 234567
Q ss_pred cCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 264 YRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 264 ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
|++..+|+ +++ +|++ .+.|..+.+++.+.|.++
T Consensus 49 ~~v~~vPt---------------~~~--~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 49 YGIMAVPA---------------IVI--NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred cCCccCCE---------------EEE--CCEE--EEecCCCHHHHHHHHHhh
Confidence 99998885 445 6664 444667777777766654
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-08 Score=96.11 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=79.1
Q ss_pred EEEcCCCCeeecc-ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 165 KLINHDGKNVTEK-DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 165 ~l~d~~G~~vsLs-d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
.++...|+.+... .-.||+|||+||++||++ |+...|.++++.+.+++. ..+.+..|+.|.+
T Consensus 358 ~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~-C~~~~p~~~~~a~~~~~~--~~v~~~~id~~~~-------------- 420 (477)
T PTZ00102 358 PVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGH-CKNLEPVYNELGEKYKDN--DSIIVAKMNGTAN-------------- 420 (477)
T ss_pred CeEEecccchHHHHhcCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHhccC--CcEEEEEEECCCC--------------
Confidence 3455566666533 235899999999999998 999999999999988753 2465665665432
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...++.|++...|+ ++++++++++...+.|..+.+.+.+.|.+...
T Consensus 421 --------------~~~~~~~~v~~~Pt--------------~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 421 --------------ETPLEEFSWSAFPT--------------ILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred --------------ccchhcCCCcccCe--------------EEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 11255678888887 88999888876677788888888887776553
|
|
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=76.19 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=57.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|+|+||++||++ |+...|.|.++.+++. ++.++-|++|. ...
T Consensus 21 ~~~~vvV~f~a~~c~~-C~~~~p~l~~la~~~~-----~i~f~~Vd~~~----------------------------~~~ 66 (113)
T cd02989 21 SSERVVCHFYHPEFFR-CKIMDKHLEILAKKHL-----ETKFIKVNAEK----------------------------APF 66 (113)
T ss_pred CCCcEEEEEECCCCcc-HHHHHHHHHHHHHHcC-----CCEEEEEEccc----------------------------CHH
Confidence 4689999999999998 9999999999998874 35555555432 235
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++++|+|...| ++++-++|+++.++.+
T Consensus 67 l~~~~~v~~vP---------------t~l~fk~G~~v~~~~g 93 (113)
T cd02989 67 LVEKLNIKVLP---------------TVILFKNGKTVDRIVG 93 (113)
T ss_pred HHHHCCCccCC---------------EEEEEECCEEEEEEEC
Confidence 78899999998 4677789999887544
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-07 Score=74.54 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.0
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
+++++|+||++||++ |+...|.+.++.+.+++. .++.+..|+.|
T Consensus 18 ~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFYAPWCGH-CKALAPIYEELAEKLKGD--DNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEECCCCHH-HHHHhhHHHHHHHHhcCC--CCEEEEEEeCc
Confidence 689999999999998 999999999999998752 24666655543
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-08 Score=79.35 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=58.3
Q ss_pred cCCCeEEEEEec-------CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 179 FLGKWTVIYFGF-------THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 179 ~kGK~vLL~Fwa-------twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
.+|++|+|+||| +||++ |+...|.|.++.+++++ ++.++-|.+|... .+
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~~~----~v~fv~Vdvd~~~------------------~w- 74 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAAPE----DCVFIYCDVGDRP------------------YW- 74 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHCCC----CCEEEEEEcCCcc------------------cc-
Confidence 358999999999 99998 99999999999998863 3667777776421 11
Q ss_pred CChHHHHHHHHHcCce-EeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 252 GSPDEIRNIARAYRVY-YMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~-~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
.+....+.+.|+|. .+|+ +++++..++++.
T Consensus 75 --~d~~~~~~~~~~I~~~iPT--------------~~~~~~~~~l~~ 105 (119)
T cd02952 75 --RDPNNPFRTDPKLTTGVPT--------------LLRWKTPQRLVE 105 (119)
T ss_pred --cCcchhhHhccCcccCCCE--------------EEEEcCCceecc
Confidence 23335667889998 8887 777765555543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=80.46 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++|||+||++||++ |....|.|.++..+|. .+.++-|++|. . .+
T Consensus 83 ~~~VVV~Fya~wc~~-Ck~m~~~l~~LA~~~~-----~vkF~kVd~d~----------------------------~-~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPG-CAALNSSLLCLAAEYP-----AVKFCKIRASA----------------------------T-GA 127 (175)
T ss_pred CcEEEEEEECCCCch-HHHHHHHHHHHHHHCC-----CeEEEEEeccc----------------------------h-hh
Confidence 459999999999998 9999999999998884 36666555431 1 45
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+..|+|...| ++++-++|+++..+.+
T Consensus 128 ~~~f~v~~vP---------------Tlllyk~G~~v~~~vG 153 (175)
T cd02987 128 SDEFDTDALP---------------ALLVYKGGELIGNFVR 153 (175)
T ss_pred HHhCCCCCCC---------------EEEEEECCEEEEEEec
Confidence 7788998888 5777789999987643
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-07 Score=81.24 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=98.0
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCe-eeccccC--CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKN-VTEKDFL--GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~-vsLsd~k--GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
......+|.+|| |..+.+.+|+. .++-||. ++|+||+|..-.||+ -...+..++++.++|.+. .++.+|.|.
T Consensus 69 l~~~a~~G~~AP--ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPp-F~~~l~~f~~l~~~f~d~--adFl~VYI~ 143 (237)
T PF00837_consen 69 LFKEAKLGGPAP--NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPP-FMAKLDAFKRLVEDFSDV--ADFLIVYIE 143 (237)
T ss_pred cccceeCCCCCC--CCceEeeCCCcceeHHHhccCCCCeEEEcccccchH-HHHHHHHHHHHHHHhhhh--hheehhhHh
Confidence 345667899999 99999999999 8999984 699999999999998 999999999999999875 245444442
Q ss_pred ----eCCC------------CCCHHHH--HHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEE
Q 020776 226 ----VDPE------------RDTVEQV--REYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMY 287 (321)
Q Consensus 226 ----~Dp~------------~Dt~e~l--~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~ 287 (321)
.|.+ +...|.+ .+...+..+.++++-.+. +....++||..... +|
T Consensus 144 EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~m--dN~~~~~YgA~PeR---------------ly 206 (237)
T PF00837_consen 144 EAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTM--DNNFNKAYGALPER---------------LY 206 (237)
T ss_pred hhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEcc--CCHHHHHhCCCcce---------------EE
Confidence 1210 0011111 223333346677764433 34567888876543 78
Q ss_pred EEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 288 LMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 288 LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
||. +|+|++.-+. ....=..+++++.|+++
T Consensus 207 Ii~-~gkv~Y~Gg~-GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 207 IIQ-DGKVVYKGGP-GPFGYSPEELREWLEKY 236 (237)
T ss_pred EEE-CCEEEEeCCC-CCCcCCHHHHHHHHHhc
Confidence 885 9999887422 11222355566666554
|
97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-07 Score=90.27 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=62.3
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
.+++++||+||++||++ |+.+.|.+.++.++|+++ ++.++.|++|.+ ...
T Consensus 369 ~~~k~VLV~FyApWC~~-Ck~m~P~~eelA~~~~~~---~v~~~kVdvD~~--------------------------~~~ 418 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPF-CQAMEASYLELAEKLAGS---GVKVAKFRADGD--------------------------QKE 418 (463)
T ss_pred cCCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC---CcEEEEEECCCC--------------------------ccH
Confidence 36899999999999998 999999999999999754 466777777632 001
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChhHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNSLADGII 313 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~~l~~~l~ 313 (321)
...+.|+|...|+ ++++.++..-...| ++..+.+.+...|.
T Consensus 419 ~~~~~~~I~~~PT--------------ii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 419 FAKQELQLGSFPT--------------ILFFPKHSSRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHHcCCCccce--------------EEEEECCCCCceeCCCCCCCHHHHHHHHH
Confidence 2245788988886 55554433222234 34677776655443
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.4e-07 Score=89.52 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|.||++||++ |....|.+.++.+.+.+. +.++.++.|.+|. ..+
T Consensus 17 ~~~~~~v~f~a~wC~~-c~~~~~~~~~~a~~~~~~-~~~v~~~~vd~~~----------------------------~~~ 66 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGH-CKSLAPEYEKAADELKKK-GPPIKLAKVDATE----------------------------EKD 66 (462)
T ss_pred cCCCEEEEEECCCCHH-HHhhhHHHHHHHHHHhhc-CCceEEEEEECCC----------------------------cHH
Confidence 5789999999999998 999999999999998765 3457666666542 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~~l~~~L 316 (321)
+.+.|+|...|+ ++++ ++|.. +..+.|..+.+.+.+.+.+.+
T Consensus 67 l~~~~~i~~~Pt--------------~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 67 LAQKYGVSGYPT--------------LKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred HHHhCCCccccE--------------EEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 678899988885 4554 57776 666778888888777776654
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=68.87 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=35.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
|+++++.|+++||++ |....+.+.++.++|++ ++.++.|+.
T Consensus 12 ~~~~~~~f~~~~~~~-~~~~~~~~~~vA~~~~~----~v~f~~vd~ 52 (103)
T cd02982 12 GKPLLVLFYNKDDSE-SEELRERFKEVAKKFKG----KLLFVVVDA 52 (103)
T ss_pred CCCEEEEEEcCChhh-HHHHHHHHHHHHHHhCC----eEEEEEEch
Confidence 789999999999998 99999999999999974 376666553
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=75.72 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++|||.||++||++ |....+.|.++..+|. .+.++-|.+| .
T Consensus 101 ~~~~VVV~Fya~wc~~-C~~m~~~l~~LA~k~~-----~vkFvkI~ad----------------------------~--- 143 (192)
T cd02988 101 KDTWVVVHLYKDGIPL-CRLLNQHLSELARKFP-----DTKFVKIIST----------------------------Q--- 143 (192)
T ss_pred CCCEEEEEEECCCCch-HHHHHHHHHHHHHHCC-----CCEEEEEEhH----------------------------H---
Confidence 3569999999999998 9999999999999984 3555655532 0
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
....|++...| ++++-++|+++..+.|
T Consensus 144 ~~~~~~i~~lP---------------Tlliyk~G~~v~~ivG 170 (192)
T cd02988 144 CIPNYPDKNLP---------------TILVYRNGDIVKQFIG 170 (192)
T ss_pred hHhhCCCCCCC---------------EEEEEECCEEEEEEeC
Confidence 13568888888 5788899999988755
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=84.59 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=62.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|++||+||++||++ |+.+.|.+.++.++|... ++.++.|++|.. ...
T Consensus 364 ~~k~vlV~FyApWC~~-Cq~m~p~~e~LA~~~~~~---~V~f~kVD~d~~---------------------------~~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPF-CQAMEASYEELAEKLAGS---GVKVAKFRADGD---------------------------QKE 412 (457)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC---CeEEEEEECCCc---------------------------chH
Confidence 5899999999999998 999999999999998644 577777765511 122
Q ss_pred HHH-HcCceEeecCCCCCCcccccceEEEEEcCCC-eEEEEeCCCCChhHHHHHHHH
Q 020776 260 IAR-AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-EFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~-~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++ .|+|...|+ ++++.+.. ..+.+.++..+.+.+.+.|..
T Consensus 413 la~~~~~I~~~PT--------------il~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 413 FAKQELQLGSFPT--------------ILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHHhhCCCceeeE--------------EEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 343 589998887 55554433 233333345677766666554
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-06 Score=76.19 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=64.7
Q ss_pred cCCCeEEEEEec---CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 179 FLGKWTVIYFGF---THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 179 ~kGK~vLL~Fwa---twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
.++...++.|.+ +||++ |+...|.+.++.+++. ++.+..+.+|. |
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~-C~~~~p~l~~la~~~~-----~~~i~~v~vd~--------------------------~ 64 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQY-CKETEQLLEELSEVSP-----KLKLEIYDFDT--------------------------P 64 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCc-hHHHHHHHHHHHhhCC-----CceEEEEecCC--------------------------c
Confidence 455555666777 99998 9999999999998883 24444556552 2
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE-EeCCCCChhHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK-FFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~-~~~~~~~~~~l~~~l~~~L 316 (321)
...++++.|+|...|+ +++-++|+.+. ++.|..+.+++.+.|+.++
T Consensus 65 ~~~~l~~~~~V~~~Pt---------------~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 65 EDKEEAEKYGVERVPT---------------TIILEEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred ccHHHHHHcCCCccCE---------------EEEEeCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 2356789999999995 44545777764 6777777777777666654
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=78.01 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=81.9
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++..++-|++|+.+.|+. |....|.|+.+.++|+ +.++.||+|.... ..|+.. -
T Consensus 145 i~~la~~~gL~fFy~~~C~~-C~~~apil~~fa~~yg------i~v~~VS~DG~~~-------------p~fp~~----~ 200 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPI-SQKMAPVIQAFAKEYG------ISVIPISVDGTLI-------------PGLPNS----R 200 (256)
T ss_pred HHHHHhceeEEEEECCCCch-hHHHHHHHHHHHHHhC------CeEEEEecCCCCC-------------CCCCCc----c
Confidence 45566889999999999997 9999999999999883 7778889885421 122222 1
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+...++.+|+..+|+ +|||+++ +++.-...|.++.++|.+.+...+..++
T Consensus 201 ~d~gqa~~l~v~~~Pa--------------l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f~ 252 (256)
T TIGR02739 201 SDSGQAQHLGVKYFPA--------------LYLVNPKSQKMSPLAYGFISQDELKERILNVLTQFK 252 (256)
T ss_pred CChHHHHhcCCccCce--------------EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhccc
Confidence 2345688899988887 9999999 5554445688999999999998887663
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=77.38 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=69.9
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
++.-.+|.|+|+|.++||.| |....|.+..+..+|.. .+++-|.+ |
T Consensus 16 ls~ag~k~v~Vdfta~wCGP-Ck~IaP~Fs~lankYp~-----aVFlkVdV----------------------------d 61 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGP-CKRIAPIFSDLANKYPG-----AVFLKVDV----------------------------D 61 (288)
T ss_pred hhccCceEEEEEEEecccch-HHhhhhHHHHhhhhCcc-----cEEEEEeH----------------------------H
Confidence 44445799999999999999 99999999999999953 44444443 3
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.-+..+..+||..+| +||.-.+|.-+..+.| .|+..|++.|.+.+.
T Consensus 62 ~c~~taa~~gV~amP---------------TFiff~ng~kid~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 62 ECRGTAATNGVNAMP---------------TFIFFRNGVKIDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred HhhchhhhcCcccCc---------------eEEEEecCeEeeeecC-CCHHHHHHHHHHHhc
Confidence 345567789999999 5788889988888744 566667777766553
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=76.06 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=73.7
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++.+++-|++|+.+.|+. |..+.|.|+.+.++|+ +.++.||+|.... ..|+.. -
T Consensus 115 l~~la~~~gL~~F~~~~C~~-C~~~~pil~~~~~~yg------~~v~~vs~DG~~~-------------~~fp~~----~ 170 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPY-CQQQAPILQQFADKYG------FSVIPVSLDGRPI-------------PSFPNP----R 170 (215)
T ss_pred HHHHhhCeEEEEEEcCCCch-hHHHHHHHHHHHHHhC------CEEEEEecCCCCC-------------cCCCCC----C
Confidence 45567899999999999996 9999999999999983 6677888885321 122221 1
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC-eEEEEeCCCCChhHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-EFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-~Iv~~~~~~~~~~~l~~~l 312 (321)
.+..+++.|||..+|+ +|||++++ ++.-...|.++.++|.+.|
T Consensus 171 ~~~g~~~~l~v~~~Pa--------------l~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 PDPGQAKRLGVKVTPA--------------LFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCHHHHHHcCCCcCCE--------------EEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 1355788899988887 99999988 4444456888888887654
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.4e-06 Score=74.01 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=56.8
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
..+|++||++||++ |....+.|.++.++|. ++.++ .+|. |
T Consensus 18 g~~vl~f~a~w~~~-C~~m~~vl~~l~~~~~-----~~~F~--~V~~--------------------------d------ 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPE-YEQLMDVCNALVEDFP-----SLEFY--VVNL--------------------------A------ 57 (204)
T ss_pred CcEEEEEeCCCCcc-hHHHHHHHHHHHHHCC-----CcEEE--EEcc--------------------------c------
Confidence 56899999999998 9999999999999884 35555 4331 1
Q ss_pred HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 262 RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 262 ~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
|+|..+| +|++-++|+++.++.| .++.++...+.+
T Consensus 58 --~~V~~vP---------------tfv~~~~g~~i~r~~G-~~~~~~~~~~~~ 92 (204)
T PTZ00062 58 --DANNEYG---------------VFEFYQNSQLINSLEG-CNTSTLVSFIRG 92 (204)
T ss_pred --cCcccce---------------EEEEEECCEEEeeeeC-CCHHHHHHHHHH
Confidence 7888888 4666689999999854 456666665544
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=60.50 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.|.||++||++ |....|.++++.+++.. .+.++
T Consensus 2 ~i~~~a~~C~~-C~~~~~~~~~~~~e~~~----~~~~~ 34 (76)
T TIGR00412 2 KIQIYGTGCAN-CQMTEKNVKKAVEELGI----DAEFE 34 (76)
T ss_pred EEEEECCCCcC-HHHHHHHHHHHHHHcCC----CeEEE
Confidence 37899999998 99999999999998752 45554
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.3e-06 Score=73.63 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=56.2
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
+++.++++.||++||++ |....+.++++..++. ++.+.-|+.| ...
T Consensus 131 ~~~pv~I~~F~a~~C~~-C~~~~~~l~~l~~~~~-----~i~~~~vD~~----------------------------~~~ 176 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPY-CPYAVLMAHKFALAND-----KILGEMIEAN----------------------------ENP 176 (215)
T ss_pred cCCCcEEEEEECCCCCC-cHHHHHHHHHHHHhcC-----ceEEEEEeCC----------------------------CCH
Confidence 44555667799999998 9988887777765531 4554444432 124
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
++++.|+|...|+ ++++.+|+. +.|....+++.+.|.+
T Consensus 177 ~~~~~~~V~~vPt---------------l~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 177 DLAEKYGVMSVPK---------------IVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHhCCccCCE---------------EEEecCCEE---EECCCCHHHHHHHHHh
Confidence 5677899999884 667778864 4466666666666553
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=74.14 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=80.3
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++.+++-|++|+.+.||. |..+.|.|+.+.++|+ +.++.||+|.... +.|+...
T Consensus 138 i~~la~~~GL~fFy~s~Cp~-C~~~aPil~~fa~~yg------~~v~~VS~DG~~~-------------p~fp~~~---- 193 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPI-DGQLAQVINDFRDTYG------LSVIPVSVDGVIN-------------PLLPDSR---- 193 (248)
T ss_pred HHHHHhcceEEEEECCCCch-hHHHHHHHHHHHHHhC------CeEEEEecCCCCC-------------CCCCCCc----
Confidence 45566789999999999997 9999999999999983 6778889885321 1232221
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC-eEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-EFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+...++.+|+..+|. +||||++. ++.-...|.++.++|.+.+......++
T Consensus 194 ~d~gqa~~l~v~~~PA--------------l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 194 TDQGQAQRLGVKYFPA--------------LMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred cChhHHHhcCCcccce--------------EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence 1223457889888776 99999985 555555688999999999988876553
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.5e-05 Score=57.49 Aligned_cols=22 Identities=27% Similarity=0.535 Sum_probs=19.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
+++||++||++ |+...|.|.++
T Consensus 2 iv~f~a~wC~~-Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCAN-CKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHh-HHHHHHHHHHH
Confidence 68999999998 99988888654
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.7e-05 Score=59.56 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=56.1
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++++.+.+..|++.||++ |+...+.+.++..++. ++.+.-+.+|
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~-C~~~~~~~~~l~~~~~-----~i~~~~vd~~---------------------------- 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHN-CPDVVQALNLMAVLNP-----NIEHEMIDGA---------------------------- 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCC-cHHHHHHHHHHHHHCC-----CceEEEEEhH----------------------------
Confidence 34677888899999999998 9999898988887653 3444444432
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
...++++.|+|..+|+ +++ ||+++.. |..+.++
T Consensus 53 ~~~e~a~~~~V~~vPt---------------~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 53 LFQDEVEERGIMSVPA---------------IFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred hCHHHHHHcCCccCCE---------------EEE--CCEEEEe--CCCCHHH
Confidence 2245688999999995 455 6888774 4444444
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=63.86 Aligned_cols=25 Identities=12% Similarity=0.188 Sum_probs=21.5
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKL 204 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L 204 (321)
-.+|+|+|+|++.||++ |...-...
T Consensus 21 ~~~Kpvmv~f~sdwC~~-Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPH-SQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHh-HHHHHHHh
Confidence 46899999999999998 99876654
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.5e-05 Score=62.39 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=61.9
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-.+|+++|+|++.||++ |......+ .++.+.+.+ +++++.++++
T Consensus 23 Ak~~~K~~lv~~~~~~c~~-c~~~~r~vl~~~~V~~~i~~----~fv~~~~dv~-------------------------- 71 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPD-SQVFNRDVLCNEAVKSLIRE----NFIFWQVDVD-------------------------- 71 (122)
T ss_pred HHhhcCCEEEEEeCCCCch-HHHHHHHHccCHHHHHHHHc----CEEEEEecCC--------------------------
Confidence 3346899999999999998 98866542 123333322 3444333322
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC-----eEEEEeCCCCChhHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-----EFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-----~Iv~~~~~~~~~~~l~~~l 312 (321)
..+...++..|++...|+ +.++|++| .++.+..|..+++++...|
T Consensus 72 ~~eg~~l~~~~~~~~~P~--------------~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 72 TSEGQRVSQFYKLDSFPY--------------VAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ChhHHHHHHhcCcCCCCE--------------EEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 122356788899888887 89999998 5677788888888877655
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-05 Score=76.85 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++.+||+||++||++ |....|.+.++.+.+++. ...+.++.|++|.+ +
T Consensus 363 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~-~~~i~~~~id~~~n-~---------------------------- 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGH-CKNLAPIYEELAEKYKDA-ESDVVIAKMDATAN-D---------------------------- 411 (462)
T ss_pred CCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhhcC-CCcEEEEEEECCCC-c----------------------------
Confidence 4799999999999998 999999999999999852 12476666665421 0
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~~l~~~ 315 (321)
+.. |++...|+ +++..+.++. ...+.|..+.+.+.+.|.+.
T Consensus 412 ~~~-~~i~~~Pt--------------~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 412 VPP-FEVEGFPT--------------IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred cCC-CCccccCE--------------EEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 112 66777776 7777666653 24455777777766666554
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.8e-05 Score=59.10 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=39.0
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
......++++++++.||++||++ |....|.+.++.+++.. .+.++.+..
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~i~~ 72 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPP-CRAEAPLLEELAEEYGG----DVEVVAVNV 72 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHH-HHhhchhHHHHHHHhcC----CcEEEEEEC
Confidence 34444555899999999999998 99999999999999864 355566664
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.6e-05 Score=76.60 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=72.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
....+||.|+|+||.+ |....|...+..+.+++. +..+.+.- +|. ...+.
T Consensus 41 ~~~~vlVeFYAPWCgh-ck~LaPey~kAA~~Lke~-~s~i~Lak--VDa--------------------------t~~~~ 90 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGH-CKALAPEYEKAATELKEE-GSPVKLAK--VDA--------------------------TEESD 90 (493)
T ss_pred cCceEEEEEEchhhhh-hhhhCcHHHHHHHHhhcc-CCCceeEE--eec--------------------------chhhh
Confidence 4568999999999998 999999999999999877 44555443 332 12256
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++.+|+|...| |+.|.++|+....|.|..+.+.+...+++.
T Consensus 91 ~~~~y~v~gyP---------------TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 91 LASKYEVRGYP---------------TLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred hHhhhcCCCCC---------------eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 78899999988 578889999877788888888888877664
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=51.97 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
-+..|+++|||+ |....+.|+++.+.+. ++.+..+++|
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~-----~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPY-CPDAVQAANRIAALNP-----NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHhCC-----ceEEEEEEcc
Confidence 467899999998 9999999888865431 3555555543
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.4e-05 Score=61.66 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=25.4
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
++.+..+..++.|..+|||+ |...+|.|.++.+...
T Consensus 36 l~~~~~~~~ilvi~e~WCgD-~~~~vP~l~kiae~~p 71 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGD-CARNVPVLAKIAEANP 71 (129)
T ss_dssp HHT--S-EEEEEE--TT-HH-HHHHHHHHHHHHHH-T
T ss_pred HHhcCCCcEEEEEECCCchh-HHHHHHHHHHHHHhCC
Confidence 44556778999999999999 9999999999998753
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=48.24 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
|+.||.+||+. |....+.+.++ ++.+ .++.++.++++.
T Consensus 1 l~~~~~~~c~~-c~~~~~~~~~~--~~~~---~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPF-CQALRPVLAEL--ALLN---KGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChh-HHhhhhHHHHH--HhhC---CCcEEEEEEcCC
Confidence 57899999997 99999999998 3332 257777777764
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00021 Score=66.53 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
...|+|+|+|.||+. .+...|.+.+..++++++. .+-.+|.-.+| .|....+
T Consensus 13 ~elvfv~FyAdWCrF-Sq~L~piF~EAa~~~~~e~-P~~kvvwg~VD--------------------------cd~e~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRF-SQMLKPIFEEAAAKFKQEF-PEGKVVWGKVD--------------------------CDKEDDI 64 (375)
T ss_pred ceEEeeeeehhhchH-HHHHhHHHHHHHHHHHHhC-CCcceEEEEcc--------------------------cchhhHH
Confidence 568999999999997 9999999999999998873 22344555555 3333457
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE-eCCCCChhHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF-FGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~-~~~~~~~~~l~~~l~~~L 316 (321)
+.+|.|...|+ +=|-.+|.+..+ |.|..+.+.+.+.|++.+
T Consensus 65 a~ky~I~KyPT---------------lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 65 ADKYHINKYPT---------------LKVFRNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccccCce---------------eeeeeccchhhhhhccchhHHHHHHHHHHHh
Confidence 88999999885 455578988774 778888898888887765
|
|
| >COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=55.06 Aligned_cols=132 Identities=25% Similarity=0.298 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCeEEE----cCCCC-eeeccc-cCCCeEEEEEe-cCCCCCCcHH-HHHHHHHHHHHHhhhcCCc-EEEEE
Q 020776 153 PSVGKAAIGGPFKLI----NHDGK-NVTEKD-FLGKWTVIYFG-FTHCPDICPD-ELQKLAAAVDKIKENSGID-IVPAF 223 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~----d~~G~-~vsLsd-~kGK~vLL~Fw-atwCp~vC~~-elp~L~~l~~~~~~~~g~~-v~vV~ 223 (321)
..+|++.|...|... +.+|- .++..+ ++||.|+|+=- +..-|. |.. .+|...+++++++++ |++ |.+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPT-CS~~hlPgY~~~~d~f~~k-GVD~I~c-- 78 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPT-CSSSHLPGYLELADEFKAK-GVDEIYC-- 78 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCC-cccccCccHHHHHHHHHHc-CCceEEE--
Confidence 357888884444444 33442 345555 57888777554 333454 886 899999999999988 654 434
Q ss_pred EeeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 224 ISVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 224 IS~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
||++ ++-.+.+|.+..+.. ..++ .|-..++.+..|...... +..+.+.+.++-.|| +||.|.+.+
T Consensus 79 VSVN----D~FVm~AWak~~g~~~~I~fi---~Dg~geFTk~~Gm~~d~~---~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 79 VSVN----DAFVMNAWAKSQGGEGNIKFI---PDGNGEFTKAMGMLVDKS---DLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred EEeC----cHHHHHHHHHhcCCCccEEEe---cCCCchhhhhcCceeecc---cCCcceeeeeEEEEE-eCCeEEEEE
Confidence 4543 468999999999865 4555 777889999999877554 223344555555555 699887765
|
|
| >PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=59.79 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=78.2
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCC-cEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~-~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
.+++- ......+.+|+++||.+.-.+|.. |..++..|..|..+++++ |. +|.++.|+- .......+...++
T Consensus 12 ~W~i~----~~~pm~~~~G~VtvVALL~asc~~-c~~qa~~le~Lr~kL~~~-g~~~I~f~vVN~--~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 12 PWKIG----GQDPMLNSLGHVTVVALLQASCYF-CLLQASRLEDLREKLENE-GLSNISFMVVNH--QGEHSRLKYWELK 83 (238)
T ss_pred CceEC----CchHhhhcCCcEEeeeehhhhhHH-HHHHHHHHHHHHHHHHHC-CCCceEEEEEcC--CCcchhHHHHHHH
Confidence 67663 244567889999999999999997 999999999999999988 55 787777763 2122233333333
Q ss_pred Hh-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 242 EF-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 242 ~~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+. ..+++++-.+ .....++..++-.... +||+|+-|++++...-+
T Consensus 84 ~r~~~~ipVyqq~-~~q~dvW~~L~G~kdD---------------~~iyDRCGrL~~~i~~P 129 (238)
T PF04592_consen 84 RRVSEHIPVYQQD-ENQPDVWELLNGSKDD---------------FLIYDRCGRLTYHIPLP 129 (238)
T ss_pred HhCCCCCceecCC-ccccCHHHHhCCCcCc---------------EEEEeccCcEEEEecCc
Confidence 33 3346666221 2334566666543211 89999999999986443
|
It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=53.73 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=57.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+.+.+||.|+++| |. |.+ .|..+++..+|... ...|.+--|.+|... .....+
T Consensus 17 ~~~~vlV~F~A~~-Pw-c~k-~~~~~~LA~e~~~a-a~~v~lakVd~~d~~-----------------------~~~~~~ 69 (116)
T cd03007 17 KFKYSLVKFDTAY-PY-GEK-HEAFTRLAESSASA-TDDLLVAEVGIKDYG-----------------------EKLNME 69 (116)
T ss_pred cCCcEEEEEeCCC-CC-CCC-hHHHHHHHHHHHhh-cCceEEEEEeccccc-----------------------chhhHH
Confidence 4578999999966 44 665 58888888888654 223554444443110 123356
Q ss_pred HHHHcCce--EeecCCCCCCcccccceEEEEEcCCCe--EEEEeCCC-CChhHHHHHHHH
Q 020776 260 IARAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKME--FVKFFGKN-NDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~--Iv~~~~~~-~~~~~l~~~l~~ 314 (321)
++++|+|. ..|+ ++|+ ++|. -...|.+. .+.+.|.+.|.+
T Consensus 70 L~~~y~I~~~gyPT--------------l~lF-~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 70 LGERYKLDKESYPV--------------IYLF-HGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HHHHhCCCcCCCCE--------------EEEE-eCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 88999998 7885 4444 4553 22345564 777777766654
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00044 Score=52.25 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=31.0
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeC
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
-.||++||+|++.||++ |...-..+ .++.+.+.+ +++.|-|.+|
T Consensus 15 ~~~kpvlv~f~a~wC~~-C~~l~~~~~~~~~v~~~~~~----~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPP-CKKLEREVFSDPEVQEALNK----NFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHH-HHHHHHHTTTSHHHHHHHHH----CSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHh-HHHHHHHHcCCHHHHHHHHC----CEEEEEEEcC
Confidence 35899999999999998 99877666 334443543 3655555543
|
... |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00093 Score=65.20 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++.+|.||++||.+ |....|...++...+++ .+.+. .+| .+....
T Consensus 46 ~~~~~~v~fyapwc~~-c~~l~~~~~~~~~~l~~----~~~~~--~vd--------------------------~~~~~~ 92 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGH-CKKLAPTYKKLAKALKG----KVKIG--AVD--------------------------CDEHKD 92 (383)
T ss_pred cCCceEEEEECCCCcc-hhhhchHHHHHHHHhcC----ceEEE--EeC--------------------------chhhHH
Confidence 4689999999999998 99999999999988874 24433 443 344466
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+.++|+|.+.|+ +.++.+...++ .+.+..+.+.+.+.+.+.++
T Consensus 93 ~~~~y~i~gfPt--------------l~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 93 LCEKYGIQGFPT--------------LKVFRPGKKPI-DYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred HHHhcCCccCcE--------------EEEEcCCCcee-eccCcccHHHHHHHHHHhhc
Confidence 788999999986 56666652333 34467778888877777664
|
|
| >PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.002 Score=59.39 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCeeeccc-cCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 158 AAIGGPFKLINHDGKNVTEKD-FLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 158 ~aP~p~f~l~d~~G~~vsLsd-~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
....|+|...+.+|+.+++.+ ++||+.||..+.+ |-.. |....-. ....+|..+.+..+++|-|++-. ..
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~-~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e-----~~ 169 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEE-MVDSWTS--PFLEDFLQEPYGRVQIVEINLIE-----NW 169 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHH-HHHHHhh--HHHHHHhhCCCCceEEEEEecch-----HH
Confidence 344579999999999988876 6899987765543 3333 4444322 34445544433368888888642 23
Q ss_pred HHHHHHHh-------------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 236 VREYVKEF-------------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 236 l~~~~~~~-------------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
++.++... +..+.+...+ .....+-+.+++....+ .++||||.+|+|+|.-.|.
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~-~~~~~iRe~Lgi~N~~~------------GYvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRG-QLSDDIREALGINNSYV------------GYVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCC-cccHHHHHHhCCCCCCc------------CeEEEECCCCeEEeCccCC
Confidence 33333322 1122222111 01234455566554333 3499999999999998888
Q ss_pred CChhHHHH
Q 020776 303 NDVNSLAD 310 (321)
Q Consensus 303 ~~~~~l~~ 310 (321)
.+++++..
T Consensus 237 At~~E~~~ 244 (252)
T PF05176_consen 237 ATPEELES 244 (252)
T ss_pred CCHHHHHH
Confidence 87766544
|
A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
.++++|+.|+..+||+ |....+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGY-CKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChh-HHHhhHHHHHHHHHCC
Confidence 4789999999999998 9999999998876653
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0022 Score=46.16 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=16.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
+..|+++||++ |....+.|.+
T Consensus 2 i~lf~~~~C~~-C~~~~~~l~~ 22 (74)
T TIGR02196 2 VKVYTTPWCPP-CKKAKEYLTS 22 (74)
T ss_pred EEEEcCCCChh-HHHHHHHHHH
Confidence 45789999998 9987776654
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0059 Score=54.43 Aligned_cols=119 Identities=16% Similarity=0.254 Sum_probs=82.6
Q ss_pred CeEEEcCCCCeeeccc-cCCCeE--EEEEe-----cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 163 PFKLINHDGKNVTEKD-FLGKWT--VIYFG-----FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd-~kGK~v--LL~Fw-----atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+..+...+|+ ++|.| |.|+-. |-.|. ..-|+. |...+..++-....+..+ ++.++.|| +...+
T Consensus 48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~g-Cs~~~D~~~g~l~hL~~r---d~tfa~vS----raP~~ 118 (211)
T PF05988_consen 48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPG-CSFWADHIDGALRHLHAR---DTTFAVVS----RAPLE 118 (211)
T ss_pred CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCc-hhhhHhhhhhhHHHHHhC---CceEEEEe----CCCHH
Confidence 6888888886 89988 567643 33443 567998 999999997777888766 68888888 45579
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++.+|.+..|..++.++. ....+...|++...+.. -.+...+|+-|. |+|...|..
T Consensus 119 ~i~afk~rmGW~~pw~Ss---~gs~Fn~D~~~~~~~~~-------~~~g~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 119 KIEAFKRRMGWTFPWYSS---YGSDFNYDFGVSFDEGG-------EMPGLSVFLRDG-GRVFHTYST 174 (211)
T ss_pred HHHHHHHhcCCCceEEEc---CCCcccccccceeccCC-------CceeEEEEEEcC-CEEEEEeec
Confidence 999999999999888843 22334445666443321 012334666666 888777643
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00062 Score=68.72 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=65.6
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHH-HHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLA-AAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~-~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
+-++|+|+|+|+|.||-. |+..-+..= +.+...+-. +++.+ -.| +|.++..
T Consensus 471 ~~~~~pVmlDfyAdWCvt-CK~~e~~tfsd~~v~~~~~---~~vlL--qaD----------------------vT~~~p~ 522 (569)
T COG4232 471 EAKAKPVMLDFYADWCVT-CKENEKYTFSDPQVQQALQ---DVVLL--QAD----------------------VTANDPA 522 (569)
T ss_pred hCCCCcEEEeeehhHHHH-hHhhhhhccCcHHHHHhcC---CeEEE--Eee----------------------ecCCCHH
Confidence 335679999999999997 997654433 333333322 44443 333 1222456
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+.++.+.||+...|+ +++++++|.-.....+.++.+.+.+.+++.
T Consensus 523 ~~~lLk~~~~~G~P~--------------~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 523 ITALLKRLGVFGVPT--------------YLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHHHHcCCCCCCE--------------EEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 677788899988887 889999998877777888888777777654
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=52.19 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=65.2
Q ss_pred ccCCCeEEEEEecC----CCCCCcHHHH--HHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 178 DFLGKWTVIYFGFT----HCPDICPDEL--QKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 178 d~kGK~vLL~Fwat----wCp~vC~~el--p~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
.-.+|+++|+|+.. ||.. |...+ |.+.+.. . + ++.+.+.+++
T Consensus 14 k~e~K~llVylhs~~~~~~~~f-c~~~l~~~~v~~~l---n-~---~fv~w~~dv~------------------------ 61 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEF-CRNTLCAPEVIEYI---N-T---RMLFWACSVA------------------------ 61 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHH-HHHHcCCHHHHHHH---H-c---CEEEEEEecC------------------------
Confidence 34689999999999 6665 75544 3333332 2 2 3544444432
Q ss_pred CChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEE---cCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 252 GSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLM---SPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LI---D~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+..+++..+++...|. +.+| +.+.+++.+..|..+++++...|...+++
T Consensus 62 --~~eg~~la~~l~~~~~P~--------------~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 62 --KPEGYRVSQALRERTYPF--------------LAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred --ChHHHHHHHHhCCCCCCE--------------EEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 122367888999988886 7777 77788899998999999999999888765
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0038 Score=56.90 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=64.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC-CCCC-------------HHHHHHHHHHhCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP-ERDT-------------VEQVREYVKEFHP 245 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp-~~Dt-------------~e~l~~~~~~~~~ 245 (321)
.||.+|+.|....||+ |++..+.|.++.+ . ++.+.++.+.+.. ..+. ...+.++......
T Consensus 106 ~~k~~I~vFtDp~Cpy-Ckkl~~~l~~~~~----~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGY-CHKLHEQMKDYNA----L-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChH-HHHHHHHHHHHhc----C-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 5789999999999998 9999888877632 2 3445444333321 1111 1222222221111
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+-.......+...++++++||.++|+ ++ -+||+++ .|..+.+++.+.|.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPt---------------iv-~~~G~~~---~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPA---------------IV-LSNGTLV---PGYQGPKEMKAFLDE 229 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccE---------------EE-EcCCeEe---eCCCCHHHHHHHHHH
Confidence 11111223566778899999999985 33 3578776 366676666555543
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0085 Score=50.91 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=69.1
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
..-++|+.+|.|-...|+. |...-..+ .++++-+.+ .+.++.+.+..... . .+..|+
T Consensus 38 i~~~~Kylllmfes~~C~y-C~~~KKd~~~~krlrEylk~----hf~~~~l~i~~skp--------------v-~f~~g~ 97 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSY-CERFKKDLKNVKRLREYLKE----HFSAYYLNISYSKP--------------V-LFKVGD 97 (182)
T ss_pred cCccCcEEEEEEcCCCChH-HHHHHHhhcchHHHHHHHhh----CeEEEEEEeccCcc--------------e-EeecCc
Confidence 3457899999999999998 98754444 334444443 25444444321110 0 000011
Q ss_pred ---hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 254 ---PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 254 ---~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
....+++++.|+|..+|+ +++.|++|+-+....|-+++++...-+.
T Consensus 98 kee~~s~~ELa~kf~vrstPt--------------fvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPT--------------FVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eeeeecHHHHHHHhccccCce--------------EEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 123468899999999988 9999999999999999999988776554
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0045 Score=54.59 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=64.5
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC-------------HHHHHHHH
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT-------------VEQVREYV 240 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt-------------~e~l~~~~ 240 (321)
+.+..-.++.+|+.|....||+ |....+.|.+ . .. +..+.++.+.+....++ .+.+.++.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~-C~~~~~~l~~----~-~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~ 142 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPY-CRKLEKELKP----N-AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAM 142 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCcc-HHHHHHHHhh----c-cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHH
Confidence 3333334789999999999998 9999988877 1 12 45666666665431121 12222222
Q ss_pred HHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 241 KEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 241 ~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
..... .........+...++++.+|+..+|+ ++ -++|+++ .|..+.+++.+
T Consensus 143 ~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPt---------------ii-~~~G~~~---~G~~~~~~l~~ 195 (197)
T cd03020 143 SGGKVPPPAASCDNPVAANLALGRQLGVNGTPT---------------IV-LADGRVV---PGAPPAAQLEA 195 (197)
T ss_pred hCCCCCCCccccCchHHHHHHHHHHcCCCcccE---------------EE-ECCCeEe---cCCCCHHHHHh
Confidence 22211 11111223556678889999999985 33 4568764 35555555443
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0047 Score=52.65 Aligned_cols=125 Identities=12% Similarity=0.023 Sum_probs=74.4
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHH-HhhhcCCcEEEEE-EeeC-CCCCCHHHHHHHHHHhC--CC
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK-IKENSGIDIVPAF-ISVD-PERDTVEQVREYVKEFH--PK 246 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~-~~~~~g~~v~vV~-IS~D-p~~Dt~e~l~~~~~~~~--~~ 246 (321)
+.++.+++.||+-+|...|-.-.. -...-|-+..+.+. |..+ +++..+ |+.| .---+---++..+++.. .+
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sa-ke~N~~l~~aik~a~f~~d---~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p 103 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSA-KEMNAPLIEAIKAAKFPHD---KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFP 103 (160)
T ss_pred cccCccccCCCEEEEEEeccCCch-hHhhHHHHHHHHHcCCCcc---ceeEEEEEecccccccchHHHHHHHHHhhhhCC
Confidence 455667788999988887665542 33444555555444 3322 444333 3543 11123445566666554 34
Q ss_pred ce-eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 247 LI-GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 247 ~~-~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
|. ++ .|..+.+.++|++... +-+++++|++|+|++...|..+++++.. +..+++
T Consensus 104 ~s~~v---lD~~G~~~~aW~L~~~-------------~SaiiVlDK~G~V~F~k~G~Ls~~Ev~q-Vi~Ll~ 158 (160)
T PF09695_consen 104 WSQFV---LDSNGVVRKAWQLQEE-------------SSAIIVLDKQGKVQFVKEGALSPAEVQQ-VIALLK 158 (160)
T ss_pred CcEEE---EcCCCceeccccCCCC-------------CceEEEEcCCccEEEEECCCCCHHHHHH-HHHHHh
Confidence 43 33 4666667777776532 1238899999999999989998876655 334443
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0042 Score=51.63 Aligned_cols=81 Identities=9% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEee
Q 020776 191 THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK 270 (321)
Q Consensus 191 twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p 270 (321)
..+|. +.+..-.|.++.++|.+ .++.++-|++|. ...++..|||..+|
T Consensus 46 ~r~~E-~~D~avvleELa~e~~~---~~v~~akVDiD~----------------------------~~~LA~~fgV~siP 93 (132)
T PRK11509 46 KRTPE-VSDNPVMIGELLREFPD---YTWQVAIADLEQ----------------------------SEAIGDRFGVFRFP 93 (132)
T ss_pred CcCCc-cccHHHHHHHHHHHhcC---CceEEEEEECCC----------------------------CHHHHHHcCCccCC
Confidence 34565 77777777777777742 246666666553 25679999999999
Q ss_pred cCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 271 TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 271 ~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++++-++|+++....|..+.+++.+.|.+++..
T Consensus 94 ---------------TLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 94 ---------------ATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ---------------EEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 577889999999999999999999999888764
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0076 Score=44.07 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
+..||++||++ |....+.|.++
T Consensus 2 v~ly~~~~C~~-C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGY-CAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChh-HHHHHHHHHHc
Confidence 56899999998 99987777554
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0029 Score=63.63 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
+.-||.|+++||+. |+...|..+++.+.+.+- ..-+.+-.|++- .+....+-
T Consensus 58 ~~~lVEFy~swCGh-Cr~FAPtfk~~A~dl~~W-~~vv~vaaVdCA--------------------------~~~N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGH-CRAFAPTFKKFAKDLEKW-RPVVRVAAVDCA--------------------------DEENVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhh-hhhcchHHHHHHHHHhcc-cceeEEEEeecc--------------------------chhhhhhH
Confidence 46789999999998 999999999999988764 222344455542 22334567
Q ss_pred HHcCceEeec
Q 020776 262 RAYRVYYMKT 271 (321)
Q Consensus 262 ~~ygv~~~p~ 271 (321)
+.|+|.+.|+
T Consensus 110 Ref~V~~~Pt 119 (606)
T KOG1731|consen 110 REFSVSGYPT 119 (606)
T ss_pred hhcCCCCCce
Confidence 7888888776
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.017 Score=49.39 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=34.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.++++|+.|+...||. |....+.+.++..++..+ +.+..+.+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~~~--v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSYGCPH-CYNFEPILEAWVKKLPKD--VKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECCCCcc-hhhhhHHHHHHHHhCCCC--ceEEEcCCcc
Confidence 6789999999999998 999999999999888432 3444444443
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.016 Score=53.49 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=65.9
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee-CCCC-----------CCHHHHHHHHH
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-DPER-----------DTVEQVREYVK 241 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~-Dp~~-----------Dt~e~l~~~~~ 241 (321)
+....-.+|.+|+.|.-..||+ |++..+.+.++.+.- .+.+..+.+.+ .+.. |....+..+..
T Consensus 110 i~~g~~~ak~~I~vFtDp~Cpy-C~kl~~~l~~~~~~g----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~ 184 (251)
T PRK11657 110 ILDGKADAPRIVYVFADPNCPY-CKQFWQQARPWVDSG----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEA 184 (251)
T ss_pred ccccCCCCCeEEEEEECCCChh-HHHHHHHHHHHhhcC----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 3333345789999999999998 999999888765421 23454443322 2210 11111122211
Q ss_pred HhCC-Cceeec-------CChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 242 EFHP-KLIGLT-------GSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 242 ~~~~-~~~~l~-------~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+.. ...... ..-+...++++++|+.++|+ +|+.|.+|++.... |-.+++++.+.|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPa--------------iv~~d~~G~~~~v~-G~~~~~~L~~~l 248 (251)
T PRK11657 185 SGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPA--------------IYYMDKDGTLQQVV-GLPDPAQLAEIM 248 (251)
T ss_pred hhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCE--------------EEEECCCCCEEEec-CCCCHHHHHHHh
Confidence 1111 000010 01233456778889888886 88889999764433 555666665544
|
|
| >COG4312 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=52.01 Aligned_cols=125 Identities=14% Similarity=0.246 Sum_probs=82.1
Q ss_pred CeEEEcCCCCeeecccc-CCCeEEEE--E-----ecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 163 PFKLINHDGKNVTEKDF-LGKWTVIY--F-----GFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~-kGK~vLL~--F-----watwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+..+...+| +.+|+|+ .||-.||. | |.--||. |...+..+.-....+... ++.+++|+- -..+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~g-CS~laD~~dGa~~HL~~~---dv~lv~VsR----APl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPG-CSFLADHWDGAVAHLEHH---DVTLVAVSR----APLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCc-hhhHHhhhhhhhhhHhhc---CceEEEEec----CcHH
Confidence 566667777 5788884 67654442 2 3346997 999999998888888765 688888884 4579
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCC--CCcc---------cccceEEEEEcCCCeEEEEe
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED--SDYL---------VDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~--~~y~---------v~~~~~~~LID~dG~Iv~~~ 299 (321)
++..|.+.+|..|+.++. ....+-+.|++...+..... ..|. -.++...|.-+.+|.|-..|
T Consensus 125 ~l~~~k~rmGW~f~w~Ss---~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty 197 (247)
T COG4312 125 ELVAYKRRMGWQFPWVSS---TDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTY 197 (247)
T ss_pred HHHHHHHhcCCcceeEec---cCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccc
Confidence 999999999999888843 33334455655443322111 1111 12445566668888886665
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0073 Score=60.42 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.+|-|||.|+++||++ |....|.+++|.++|++. .+|++.
T Consensus 383 e~KdVLvEfyAPWCgH-Ck~laP~~eeLAe~~~~~--~~vviA 422 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGH-CKALAPIYEELAEKYKDD--ENVVIA 422 (493)
T ss_pred cccceEEEEcCcccch-hhhhhhHHHHHHHHhcCC--CCcEEE
Confidence 4799999999999999 999999999999999875 245444
|
|
| >KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.023 Score=48.25 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=85.4
Q ss_pred cCCCCCCCCCCCCCeE-EEcCC----CCeeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 150 KQGPSVGKAAIGGPFK-LINHD----GKNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~-l~d~~----G~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.....+|+..|...++ +.+.. +.+++++++ +||-++|+=. +..-|.-|...+|.+.+-.++++.+ |.+.+ +
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksK-GVd~i-i 83 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSK-GVDEI-I 83 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhc-CCcEE-E
Confidence 3456788888832244 22222 227888884 7977766432 2223331567799999999999987 66543 3
Q ss_pred EEeeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 223 FISVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 223 ~IS~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
-||+ +++-.+++|.+.++.+ ..++ .|...++.+.+|+...-... .....+..+-++=.||++.+..
T Consensus 84 cvSV----nDpFv~~aW~k~~g~~~~V~f~---aD~~g~ftk~lgleld~~d~----~~g~RS~R~a~vvengkV~~~n 151 (171)
T KOG0541|consen 84 CVSV----NDPFVMKAWAKSLGANDHVKFV---ADPAGEFTKSLGLELDLSDK----LLGVRSRRYALVVENGKVTVVN 151 (171)
T ss_pred EEec----CcHHHHHHHHhhcCccceEEEE---ecCCCceeeeccceeeeccc----cCccccccEEEEEeCCeEEEEE
Confidence 4665 4579999999999753 4455 67777888888876542211 1122233344555689887764
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.055 Score=40.20 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=17.6
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHH
Q 020776 189 GFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 189 watwCp~vC~~elp~L~~l~~~~ 211 (321)
+.++|+. |......++++..++
T Consensus 6 ~~~~C~~-C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 6 FSPGCPY-CPELVQLLKEAAEEL 27 (76)
T ss_dssp ECSSCTT-HHHHHHHHHHHHHHT
T ss_pred eCCCCCC-cHHHHHHHHHHHHhc
Confidence 5777998 998888888777766
|
... |
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.062 Score=46.30 Aligned_cols=96 Identities=9% Similarity=0.088 Sum_probs=47.2
Q ss_pred eEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHH-HH--HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQ-KL--AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 164 f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp-~L--~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
+.....+.+.+..+.-.+|+++|.+.++||.. |..+.. .+ .++.+.+.++ + |.|-+|.+ +.|+ +..+.
T Consensus 20 V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~w-ChvM~~esf~d~eVa~~lN~~----F--I~VkvDre-e~Pd-id~~y 90 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKENKPIFLSIGYSWCHW-CHVMERESFSDPEVAEYLNRN----F--IPVKVDRE-ERPD-IDKIY 90 (163)
T ss_dssp S--B-SSHHHHHHHHHHT--EEEEEE-TT-HH-HHHHHHHTTT-HHHHHHHHHH-------EEEEEETT-T-HH-HHHHH
T ss_pred CCcccCCHHHHHHHHhcCCcEEEEEEecCCcc-hhhhcccCcCCHHHHHHHhCC----E--EEEEeccc-cCcc-HHHHH
Confidence 44444444555556667999999999999998 997653 22 2234444333 4 45556643 2233 32222
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
..+ .....|..+.|. +++++|+|+.++.
T Consensus 91 ~~~----------------~~~~~~~gGwPl--------------~vfltPdg~p~~~ 118 (163)
T PF03190_consen 91 MNA----------------VQAMSGSGGWPL--------------TVFLTPDGKPFFG 118 (163)
T ss_dssp HHH----------------HHHHHS---SSE--------------EEEE-TTS-EEEE
T ss_pred HHH----------------HHHhcCCCCCCc--------------eEEECCCCCeeee
Confidence 221 011225556666 8999999999876
|
; PDB: 3IRA_A. |
| >PF13778 DUF4174: Domain of unknown function (DUF4174) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.059 Score=43.86 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=67.4
Q ss_pred ccccCCCe-EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 176 EKDFLGKW-TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 176 Lsd~kGK~-vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
|+++++|- +||.|-.+--.+.-..++..|++-...+.++ ++.++.+. ++..... .-..+.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---di~v~~i~-~~~~~~~---------------~~~~~~ 63 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---DIVVIVIT-GDGARSP---------------GKPLSP 63 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---ceEEEEEe-CCccccc---------------cCcCCH
Confidence 56666643 4555543433333556667777766667766 67766664 3221110 011235
Q ss_pred HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 255 DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 255 d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
.....+.+.|++... ...++||++||.+..++....+++++.+.|..
T Consensus 64 ~~~~~lr~~l~~~~~-------------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 64 EDIQALRKRLRIPPG-------------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHHHHHhCCCCC-------------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 667788888887622 23489999999999999899999888877653
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.03 Score=41.67 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAV 208 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~ 208 (321)
++.|+.+|||+ |....+.|.++.
T Consensus 1 V~~f~~~~Cp~-C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPY-CKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChh-HHHHHHHHHHcC
Confidence 46789999998 999998888874
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.13 Score=41.12 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCC----------
Q 020776 204 LAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE---------- 273 (321)
Q Consensus 204 L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~---------- 273 (321)
|.+...++++. | +.+|.|++ ++++.+++|++..+.+++++ .|+..++.+++|+...-...
T Consensus 2 L~~~~~~l~~~-g--v~lv~I~~----g~~~~~~~f~~~~~~p~~ly---~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~ 71 (115)
T PF13911_consen 2 LSRRKPELEAA-G--VKLVVIGC----GSPEGIEKFCELTGFPFPLY---VDPERKLYKALGLKRGLKWSLLPPALWSGL 71 (115)
T ss_pred hhHhHHHHHHc-C--CeEEEEEc----CCHHHHHHHHhccCCCCcEE---EeCcHHHHHHhCCccccccCCCchHHHHHH
Confidence 45566777665 4 55555664 34666999999999999977 67778888888876521110
Q ss_pred --------C---CCCc---ccccceEEEEEcCCCeEEEEeC
Q 020776 274 --------E---DSDY---LVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 274 --------~---~~~y---~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
. ..++ .......+||+|++|+|++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 72 SNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0 0001 1222357899999999998763
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.089 Score=51.33 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
....|+.|++.||++ |+...|...++...++. +..+.+..+..+ ....+
T Consensus 162 ~~~~lv~f~aPwc~~-ck~l~~~~~~~a~~~~~--~~~v~~~~~d~~----------------------------~~~~~ 210 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGH-CKKLAPEWEKLAKLLKS--KENVELGKIDAT----------------------------VHKSL 210 (383)
T ss_pred CcceEEEEeccccHH-hhhcChHHHHHHHHhcc--CcceEEEeeccc----------------------------hHHHH
Confidence 456788999999998 99999999999998864 235665544421 22344
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
...++|...|+ +.++-++.....++.+..+.+.+...+.+..
T Consensus 211 ~~~~~v~~~Pt--------------~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 211 ASRLEVRGYPT--------------LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred hhhhcccCCce--------------EEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 56677777775 4444444442455556667776666665543
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.05 Score=50.96 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+..-+|.|+++||.. |.+.-|...++--++++- |..|.+=- +| ...-..+
T Consensus 43 ddiW~VdFYAPWC~H-CKkLePiWdeVG~elkdi-g~PikVGK--lD--------------------------aT~f~ai 92 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAH-CKKLEPIWDEVGHELKDI-GLPIKVGK--LD--------------------------ATRFPAI 92 (468)
T ss_pred CCeEEEEeechhhhh-cccccchhHHhCcchhhc-CCceeecc--cc--------------------------cccchhh
Confidence 357789999999998 999888888887777654 44444321 11 1122456
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+..|||.+.|+ +.+-++|..+.+. |....+.+.+
T Consensus 93 AnefgiqGYPT---------------Ik~~kgd~a~dYR-G~R~Kd~iie 126 (468)
T KOG4277|consen 93 ANEFGIQGYPT---------------IKFFKGDHAIDYR-GGREKDAIIE 126 (468)
T ss_pred HhhhccCCCce---------------EEEecCCeeeecC-CCccHHHHHH
Confidence 88999999985 4555666665544 5555555544
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.044 Score=44.80 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred cCCCeEEEEEecC-------CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 179 FLGKWTVIYFGFT-------HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 179 ~kGK~vLL~Fwat-------wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
-.|++++|.|.++ |||+ |....|.+++......+ +..+|.+.+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~~~----~~~lv~v~V 66 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKAPE----NARLVYVEV 66 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-ST----TEEEEEEE-
T ss_pred cCCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhCCC----CceEEEEEc
Confidence 3568888888755 9998 99999999998877543 455565554
|
; PDB: 1V9W_A 1WOU_A. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.22 Score=51.03 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=50.2
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++..+-.|..++||. |+.....++++..+.. +....++ ... ...++
T Consensus 476 ~~~~i~v~~~~~C~~-Cp~~~~~~~~~~~~~~---~i~~~~i--~~~----------------------------~~~~~ 521 (555)
T TIGR03143 476 KPVNIKIGVSLSCTL-CPDVVLAAQRIASLNP---NVEAEMI--DVS----------------------------HFPDL 521 (555)
T ss_pred CCeEEEEEECCCCCC-cHHHHHHHHHHHHhCC---CceEEEE--ECc----------------------------ccHHH
Confidence 344466778999998 9988888877766542 2333333 211 12456
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++|+|..+|+ ++|| |++++. |..+.+++.+.|
T Consensus 522 ~~~~~v~~vP~---------------~~i~--~~~~~~--G~~~~~~~~~~~ 554 (555)
T TIGR03143 522 KDEYGIMSVPA---------------IVVD--DQQVYF--GKKTIEEMLELI 554 (555)
T ss_pred HHhCCceecCE---------------EEEC--CEEEEe--eCCCHHHHHHhh
Confidence 88999999995 5665 555543 555766665543
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.08 Score=39.66 Aligned_cols=82 Identities=16% Similarity=0.036 Sum_probs=45.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC--CCHHHHHHHHHHh--CCCceeecCChHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER--DTVEQVREYVKEF--HPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~--Dt~e~l~~~~~~~--~~~~~~l~~~~d~~~~~ 260 (321)
|..|+...||. |....+.+.++...... +..+..+.+.+.+.. .+....+...... +..+.+.. .-.....
T Consensus 1 i~~f~d~~Cp~-C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPY-CYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHE--ALADTAL 75 (98)
T ss_pred CeEEECCCCHh-HHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHH--HHHHHHH
Confidence 46788999998 99999999998744432 234444444444321 1222222222221 11111110 0144567
Q ss_pred HHHcCceEeec
Q 020776 261 ARAYRVYYMKT 271 (321)
Q Consensus 261 a~~ygv~~~p~ 271 (321)
+..+|+.++|+
T Consensus 76 ~~~~g~~g~Pt 86 (98)
T cd02972 76 ARALGVTGTPT 86 (98)
T ss_pred HHHcCCCCCCE
Confidence 78899988884
|
Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.36 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|..+||++ |......|.+
T Consensus 2 v~l~~~~~c~~-c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPY-CKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChh-HHHHHHHHHH
Confidence 46788999998 9986665554
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.2 Score=37.77 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=27.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
+..|..+|||+ |......|+++..++. +..+. .++++
T Consensus 3 v~iy~~~~C~~-C~~a~~~L~~l~~~~~---~i~~~--~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPY-CVRAKELAEKLSEERD---DFDYR--YVDIH 39 (85)
T ss_pred EEEEeCCCChh-HHHHHHHHHhhccccc---CCcEE--EEECC
Confidence 57789999998 9999999999886652 33444 44554
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.42 Score=42.51 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKE 213 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~ 213 (321)
.|++.|+.|+.-.||+ |...-+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~Cph-C~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPH-CYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCcc-HHHhcccccchHHHHHhCCC
Confidence 4688899999999998 99987765 677777754
|
|
| >COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.34 Score=36.16 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYR 265 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~yg 265 (321)
+-|++..||+ |......|.++ +.+...|-|+ .+...+++|+.-.+ .-..-.-.+..|
T Consensus 5 ~lfgsn~Cpd-ca~a~eyl~rl--------~v~yd~VeIt-----~Sm~NlKrFl~lRD---------s~~~Fd~vk~~g 61 (85)
T COG4545 5 KLFGSNLCPD-CAPAVEYLERL--------NVDYDFVEIT-----ESMANLKRFLHLRD---------SRPEFDEVKSNG 61 (85)
T ss_pred eeeccccCcc-hHHHHHHHHHc--------CCCceeeehh-----hhhhhHHHHHhhhc---------cchhHHhhhhcC
Confidence 4588999998 98877777766 3455555555 45677888877664 112222356677
Q ss_pred ceEeec
Q 020776 266 VYYMKT 271 (321)
Q Consensus 266 v~~~p~ 271 (321)
-.++|.
T Consensus 62 yiGIPa 67 (85)
T COG4545 62 YIGIPA 67 (85)
T ss_pred cccceE
Confidence 777774
|
|
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.29 Score=40.88 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=38.3
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.+.+.+-.++++|+.|+.-.||+ |....+.+.++.+++-+. | ++.++...+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~-C~~~~~~~~~~~~~~i~~-~-~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPH-CAKFHEELEKLLKKYIDP-G-KVKFVFRPV 54 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT-T-TEEEEEEES
T ss_pred CCeecCCCCCeEEEEEECCCCHh-HHHHHHHHhhhhhhccCC-C-ceEEEEEEc
Confidence 34455667899999999999998 999999999999998333 1 566666654
|
... |
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.3 Score=39.77 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCCeEEEEEec--------CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 180 LGKWTVIYFGF--------THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 180 kGK~vLL~Fwa--------twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
+|+.+++.|.+ +|||+ |....|.+.+..+...+ ++.+|.+-+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~ap~----~~~~v~v~V 73 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKHAPE----DVHFVHVYV 73 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHhCCC----ceEEEEEEe
Confidence 57778888864 59998 99999999998875543 466665554
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.87 Score=46.23 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=54.1
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
..+.++.-+..|...+||+ |+.....++++..... .|..-.| |. ..
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~-Cp~~v~~~~~~a~~~~-----~i~~~~i--d~--------------------------~~ 157 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHN-CPDVVQALNLMAVLNP-----NITHTMI--DG--------------------------AL 157 (517)
T ss_pred HhcCCCeEEEEEEcCCCCC-cHHHHHHHHHHHHhCC-----CceEEEE--Ec--------------------------hh
Confidence 4445556688999999998 9998888888766432 3443333 21 12
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.+|++.+.|. + +||. ... +.+..+.+++.+.+.+
T Consensus 158 ~~~~~~~~~v~~VP~--------------~-~i~~--~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 158 FQDEVEARNIMAVPT--------------V-FLNG--EEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred CHhHHHhcCCcccCE--------------E-EECC--cEE--EecCCCHHHHHHHHhc
Confidence 245677899999995 4 4553 333 3366666666666543
|
|
| >COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.5 Score=39.68 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=36.4
Q ss_pred EcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhh
Q 020776 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213 (321)
Q Consensus 167 ~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~ 213 (321)
...++..+-..+..++++++.|.-..||. |.+.++.|.+.+....+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~-C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPY-CKEAFPELKKKYIDDGK 115 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCcc-HHHHHHHHHHHhhhcCC
Confidence 34556666666666799999999999998 99999999997666653
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.41 Score=33.45 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.8
Q ss_pred EEEEecCCCCCCcHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLA 205 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~ 205 (321)
++.|+..|||+ |......|+
T Consensus 1 V~vy~~~~C~~-C~~~~~~L~ 20 (60)
T PF00462_consen 1 VVVYTKPGCPY-CKKAKEFLD 20 (60)
T ss_dssp EEEEESTTSHH-HHHHHHHHH
T ss_pred cEEEEcCCCcC-HHHHHHHHH
Confidence 46788999998 988766663
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.5 Score=43.97 Aligned_cols=89 Identities=10% Similarity=0.067 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++-+|||.||-..++. |...-..|..|+.+|. .+.++-|..+.- .
T Consensus 145 ~~~~VVVHiY~~~~~~-C~~mn~~L~~LA~kyp-----~vKFvkI~a~~~----------------------------~- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPR-CEIMNSCLECLARKYP-----EVKFVKIRASKC----------------------------P- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCC-HHHHHHHHHHHHHH-T-----TSEEEEEEECGC----------------------------C-
T ss_pred CCcEEEEEEEeCCCch-HHHHHHHHHHHHHhCC-----ceEEEEEehhcc----------------------------C-
Confidence 4568999999999997 9999999999999997 356665553210 0
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC---CChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN---NDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~---~~~~~l~~~l~~~L~~ 318 (321)
+...|.....| ++|+-++|.++..+.+. ...+-..++|+..|.+
T Consensus 190 ~~~~f~~~~LP---------------tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 190 ASENFPDKNLP---------------TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp TTTTS-TTC-S---------------EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred cccCCcccCCC---------------EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 12345566666 57888899999886442 2223345566666654
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.22 Score=44.78 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=26.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~ 211 (321)
+++.++++||+.||.. |...-..+..+.+.+
T Consensus 16 ~~~~~~~~f~a~wa~~-~~q~~~v~~~~~~~~ 46 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVV-QKQMDQVFDHLAEYF 46 (227)
T ss_pred ccchhhhhhhhhhhhh-hhhHHHHHHHHHHhh
Confidence 7889999999999997 998777777777766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=7.2 Score=38.93 Aligned_cols=131 Identities=9% Similarity=0.004 Sum_probs=75.5
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC-H--------
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT-V-------- 233 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt-~-------- 233 (321)
.+.+.-.+|+.|++.+++|..=+|..-++- .. |...+...+...+++.+. +|.+|-|..|.+.+. +
T Consensus 278 rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~-v~~al~~ae~~r~~L~~r---~VlvVPv~~~~~~~~~~~~~gfg~~ 352 (453)
T PLN03098 278 RLPVRLSTNRIVELVQLRDITRPVILAGTK-ES-VTLAMQKAERYRTELLKR---GVLLIPVVWGENKDPQPKKKGFGRS 352 (453)
T ss_pred cceEeccCCCEEeHHHhcCcceEEEEECCH-HH-HHHHHHHhHHHHHHHHHc---CcEEEEEecCCCCcccccccccccc
Confidence 344444568899999999965444333333 44 778888999999999877 677776666532210 0
Q ss_pred ---------------H-----HHHHHHHHhCCCceeecCChHHHHHHHH-H---cCceEeecCCCCCCcccccceEEEEE
Q 020776 234 ---------------E-----QVREYVKEFHPKLIGLTGSPDEIRNIAR-A---YRVYYMKTAEEDSDYLVDHSIVMYLM 289 (321)
Q Consensus 234 ---------------e-----~l~~~~~~~~~~~~~l~~~~d~~~~~a~-~---ygv~~~p~~~~~~~y~v~~~~~~~LI 289 (321)
+ ..+.-++ -...|....-+.++-....+ + =|+. |. .+.++.|
T Consensus 353 s~~a~~~p~~~~~~~~~~~~~~~~~~~~-~~kr~~a~pv~~~~W~~wi~~q~~~~gv~--~~-----------~~vyi~l 418 (453)
T PLN03098 353 SKAAASLPSIGDDFEKRAQSAAAKSVLK-GEKRFKAEVVSPAEWERWIRDQQESEGVT--PG-----------EDVYIIL 418 (453)
T ss_pred chhhhcCCCccchhhhhhHHHHHHHhhh-cccceEEeecchHHHHHHHHHHHHhcCCC--CC-----------CceEEEE
Confidence 0 1111111 11223333222222222221 1 1221 11 1347889
Q ss_pred cCCCeEEEEeCCCCChhHHHHHH
Q 020776 290 SPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 290 D~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
-.||+|+..-.|..++.++.++|
T Consensus 419 r~dGrVr~SG~G~P~W~~~v~eL 441 (453)
T PLN03098 419 RLDGRVRRSGRGMPEWQEIVKEL 441 (453)
T ss_pred eeCCeEecCCCCCCCHHHHHHhC
Confidence 99999999988889999888776
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.7 Score=44.05 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=53.9
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
..+.++.-+..|....||+ |+.....++++..+.. +|..-. +|. ..
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~-Cp~~v~~~~~~a~~~p-----~i~~~~--id~--------------------------~~ 158 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQN-CPDVVQALNQMALLNP-----NISHTM--IDG--------------------------AL 158 (515)
T ss_pred HhcCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhCC-----CceEEE--EEc--------------------------hh
Confidence 4455666788999999998 9988888877766532 343222 221 12
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.+|++.+.|. ++||. ..+ +.+..+.+++.+.+.+
T Consensus 159 ~~~~~~~~~v~~VP~---------------~~i~~--~~~--~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 159 FQDEVEALGIQGVPA---------------VFLNG--EEF--HNGRMDLAELLEKLEE 197 (515)
T ss_pred CHHHHHhcCCcccCE---------------EEECC--cEE--EecCCCHHHHHHHHhh
Confidence 245678899999995 44553 333 3366676666655544
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.1 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=17.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|...|||+ |......|.++
T Consensus 2 v~~y~~~~Cp~-C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPY-CKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHH-HHHHHHHHHHc
Confidence 46678999998 99987777776
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=87.96 E-value=0.88 Score=31.90 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=17.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|..+|||+ |......|.+.
T Consensus 2 v~ly~~~~Cp~-C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPY-CKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc
Confidence 45678999998 99887777755
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.31 Score=44.20 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
-||.|+++|||. |..-.+.+..+..--.+ .++++-.|.|++.|
T Consensus 42 wmi~~~ap~~ps-c~~~~~~~~~~a~~s~d-L~v~va~VDvt~np 84 (248)
T KOG0913|consen 42 WMIEFGAPWCPS-CSDLIPHLENFATVSLD-LGVKVAKVDVTTNP 84 (248)
T ss_pred HHHHhcCCCCcc-ccchHHHHhccCCccCC-CceeEEEEEEEecc
Confidence 357889999997 99999999887654433 24455556666654
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.6 Score=32.01 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
+..|+.+|||+ |......|++
T Consensus 1 v~ly~~~~Cp~-C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPY-CTRAKALLSS 21 (79)
T ss_pred CEEEecCCChh-HHHHHHHHHH
Confidence 35678999998 9987777764
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes | Back alignment and domain information |
|---|
Probab=86.80 E-value=1.3 Score=35.58 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=35.6
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
..|+.++|+. |......|++. |..+.++ .+..+.-+.++++++++..+..+.
T Consensus 3 ~iY~~~~C~~-c~ka~~~L~~~--------gi~~~~i--di~~~~~~~~el~~~~~~~~~~~~ 54 (115)
T cd03032 3 KLYTSPSCSS-CRKAKQWLEEH--------QIPFEER--NLFKQPLTKEELKEILSLTENGVE 54 (115)
T ss_pred EEEeCCCCHH-HHHHHHHHHHC--------CCceEEE--ecCCCcchHHHHHHHHHHhcCCHH
Confidence 3567899998 98876666553 4455544 444334578999999998865543
|
It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif. |
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.7 Score=31.39 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=27.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
+..|..+|||+ |......|++. +..+.. ++++. +++...++.+..+
T Consensus 2 i~ly~~~~Cp~-C~~ak~~L~~~--------~i~~~~--i~i~~---~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPY-CVRAKALLDKK--------GVDYEE--IDVDG---DPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChH-HHHHHHHHHHC--------CCcEEE--EECCC---CHHHHHHHHHHhC
Confidence 45778899998 99877666542 445554 45542 2445555555444
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=85.83 E-value=2.3 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVD 209 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~ 209 (321)
++.|..+|||+ |......|.++..
T Consensus 2 V~vys~~~Cp~-C~~ak~~L~~~~~ 25 (86)
T TIGR02183 2 VVIFGRPGCPY-CVRAKQLAEKLAI 25 (86)
T ss_pred EEEEeCCCCcc-HHHHHHHHHHhCc
Confidence 56778999998 9998887777643
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.1 Score=35.17 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
..|..++|+. |......|++. |..+..+-|. .+..+.+++.++....+..
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~--------~i~~~~idi~--~~~~~~~~l~~~~~~~~~~ 51 (105)
T cd02977 2 TIYGNPNCST-SRKALAWLEEH--------GIEYEFIDYL--KEPPTKEELKELLAKLGLG 51 (105)
T ss_pred EEEECCCCHH-HHHHHHHHHHc--------CCCcEEEeec--cCCCCHHHHHHHHHhcCCC
Confidence 4678899998 98876666543 4556555444 3346788999988887743
|
ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=85.69 E-value=5.3 Score=31.88 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
..++++|+=-.|.|| +....+..+++.++...++ +.+..+.+=.. -+--..
T Consensus 18 ~~~~~~iFKHSt~C~-IS~~a~~~~e~~~~~~~~~----~~~y~l~v~~~------------------------R~vSn~ 68 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCP-ISAMALREFEKFWEESPDE----IPVYYLDVIEY------------------------RPVSNA 68 (105)
T ss_dssp --SEEEEEEE-TT-H-HHHHHHHHHHHHHHHHT--------EEEEEGGGG------------------------HHHHHH
T ss_pred ccCcEEEEEeCCCCh-hhHHHHHHHHHHhhcCCcc----ceEEEEEEEeC------------------------chhHHH
Confidence 468888888899999 6888888888888777543 44444443111 233456
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChhH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNS 307 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~~ 307 (321)
++..|||.-.- |.++|| ++|++++.- -..++.+.
T Consensus 69 IAe~~~V~HeS-------------PQ~ili-~~g~~v~~aSH~~It~~~ 103 (105)
T PF11009_consen 69 IAEDFGVKHES-------------PQVILI-KNGKVVWHASHWDITAEA 103 (105)
T ss_dssp HHHHHT----S-------------SEEEEE-ETTEEEEEEEGGG-SHHH
T ss_pred HHHHhCCCcCC-------------CcEEEE-ECCEEEEECccccCCHHh
Confidence 78889987543 335555 789998863 23445444
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.4 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|..+|||. |......|++
T Consensus 3 v~ly~~~~C~~-C~ka~~~L~~ 23 (73)
T cd03027 3 VTIYSRLGCED-CTAVRLFLRE 23 (73)
T ss_pred EEEEecCCChh-HHHHHHHHHH
Confidence 34567899998 9987777765
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=85.47 E-value=4.4 Score=29.27 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=15.9
Q ss_pred EEEecCCCCCCcHHHHHHHHH
Q 020776 186 IYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~ 206 (321)
..|..++||+ |......|++
T Consensus 2 ~ly~~~~Cp~-C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQ-CKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHH-HHHHHHHHHH
Confidence 4677899998 9988777764
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=2.1 Score=34.14 Aligned_cols=22 Identities=32% Similarity=0.473 Sum_probs=16.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
|+.|..+|||+ |......|++.
T Consensus 15 V~vys~~~CPy-C~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPF-CRNALDILNKF 36 (108)
T ss_pred EEEEECCCChH-HHHHHHHHHHc
Confidence 56778999998 98866666554
|
|
| >PRK01655 spxA transcriptional regulator Spx; Reviewed | Back alignment and domain information |
|---|
Probab=84.97 E-value=1.5 Score=36.31 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=35.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
+..|..++|+. |......|.+. |..+..+-|. .+..+.+++.++++..+..+
T Consensus 2 i~iY~~~~C~~-C~ka~~~L~~~--------gi~~~~idi~--~~~~~~~eL~~~l~~~~~g~ 53 (131)
T PRK01655 2 VTLFTSPSCTS-CRKAKAWLEEH--------DIPFTERNIF--SSPLTIDEIKQILRMTEDGT 53 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCCcEEeecc--CChhhHHHHHHHHHHhcCCH
Confidence 34677999998 99866555433 4555555443 33457899999999886544
|
|
| >cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.2 Score=35.52 Aligned_cols=51 Identities=16% Similarity=0.405 Sum_probs=34.7
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
..|..++|+. |......|++- |..+..+-+.-| ..+.+++.++....+.++
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~--------~i~~~~idi~~~--~~~~~el~~~~~~~~~~~ 52 (111)
T cd03036 2 KFYEYPKCST-CRKAKKWLDEH--------GVDYTAIDIVEE--PPSKEELKKWLEKSGLPL 52 (111)
T ss_pred EEEECCCCHH-HHHHHHHHHHc--------CCceEEecccCC--cccHHHHHHHHHHcCCCH
Confidence 3567899998 98877666543 455555544433 457788999888877543
|
Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine. |
| >TIGR00365 monothiol glutaredoxin, Grx4 family | Back alignment and domain information |
|---|
Probab=83.14 E-value=3.6 Score=32.05 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.3
Q ss_pred CCCeEEEEEec----CCCCCCcHHHHHHHHHH
Q 020776 180 LGKWTVIYFGF----THCPDICPDELQKLAAA 207 (321)
Q Consensus 180 kGK~vLL~Fwa----twCp~vC~~elp~L~~l 207 (321)
..+.|+|+-.. +|||+ |...-..|++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~-C~~ak~lL~~~ 40 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGF-SARAVQILKAC 40 (97)
T ss_pred ccCCEEEEEccCCCCCCCch-HHHHHHHHHHc
Confidence 44567676553 79998 98866666554
|
The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=82.99 E-value=2.7 Score=32.86 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=15.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|.-+|||+ |...-..|.+.
T Consensus 10 Vvvysk~~Cp~-C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCM-CHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc
Confidence 45567899998 98765555443
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=82.72 E-value=7.2 Score=40.00 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=22.7
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAV 208 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~ 208 (321)
.++++.++|+.|+...|.. |.+....|+++.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~-~~e~~~~l~e~~ 392 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEK-SAELQSFLGEFA 392 (555)
T ss_pred HhcCCCEEEEEEECCCchh-hHHHHHHHHHHH
Confidence 4567778888999888986 877666555554
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK12559 transcriptional regulator Spx; Provisional | Back alignment and domain information |
|---|
Probab=81.97 E-value=2.8 Score=34.70 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
+..|..++|+. |+.....|++- |..+..+-+.-| .-+.++++.+++..+..+
T Consensus 2 i~iY~~~~C~~-crkA~~~L~~~--------gi~~~~~di~~~--~~s~~el~~~l~~~~~g~ 53 (131)
T PRK12559 2 VVLYTTASCAS-CRKAKAWLEEN--------QIDYTEKNIVSN--SMTVDELKSILRLTEEGA 53 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCCeEEEEeeCC--cCCHHHHHHHHHHcCCCH
Confidence 45677999998 99866555433 555655544444 467899999999865443
|
|
| >PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function | Back alignment and domain information |
|---|
Probab=81.86 E-value=5.6 Score=36.68 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=29.4
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
-.||+.+++..+-|||. |..+.-.|--...+|+
T Consensus 56 ~~Gk~~v~~igw~gCP~-~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPY-CAAESWALYIALSRFG 88 (249)
T ss_pred CCCeeEEEEEecccCcc-chhhHHHHHHHHHhcC
Confidence 36999999999999996 9999888888888886
|
|
| >KOG4498 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.70 E-value=5.4 Score=35.15 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=38.9
Q ss_pred EcCCCCeeecccc-C-CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 167 INHDGKNVTEKDF-L-GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 167 ~d~~G~~vsLsd~-k-GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.+..|+.|.+.++ + .+.||...--..|-- |+.+...|.++.+-+++. |+...+|
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvl-CR~~aadLa~l~~~ld~~-Gv~Li~v 90 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVL-CREEAADLASLKDLLDEL-GVVLIAV 90 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEE-eHHHHHHHHHHHHHHHHh-CCEEEEE
Confidence 6788999999886 3 345555666889995 999999999995555444 5444333
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=80.50 E-value=4.7 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.0
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~ 206 (321)
+.-|+.|..+|||. |...-..|.+
T Consensus 7 ~~~V~ly~~~~Cp~-C~~ak~~L~~ 30 (79)
T TIGR02190 7 PESVVVFTKPGCPF-CAKAKATLKE 30 (79)
T ss_pred CCCEEEEECCCCHh-HHHHHHHHHH
Confidence 34456778999998 9987777753
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=80.44 E-value=11 Score=36.29 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++++|+.-..+ +|+ -++|+++.+. |..+++.+.+.|..+++
T Consensus 101 d~klAKKLgv~E~~S--------------iyV-fkd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 101 DAKLAKKLGVEEEGS--------------IYV-FKDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp THHHHHHHT--STTE--------------EEE-EETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred HHHHHHhcCccccCc--------------EEE-EECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 367889999876443 554 5889998877 88999999999888774
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family | Back alignment and domain information |
|---|
Probab=80.31 E-value=1.5 Score=35.36 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=35.3
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
..|+.++|+. |......|++- |..+.++ ++..+..+.+++.++++..+..+
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~--------~i~~~~i--di~~~~~~~~el~~l~~~~~~~~ 52 (117)
T TIGR01617 2 KVYGSPNCTT-CKKARRWLEAN--------GIEYQFI--DIGEDGPTREELLDILSLLEDGI 52 (117)
T ss_pred EEEeCCCCHH-HHHHHHHHHHc--------CCceEEE--ecCCChhhHHHHHHHHHHcCCCH
Confidence 3568899998 99877766652 4455544 54444467888999999888544
|
This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B. |
| >cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins | Back alignment and domain information |
|---|
Probab=80.01 E-value=5.1 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=17.6
Q ss_pred CCCeEEEEEec----CCCCCCcHHHHHHHHHH
Q 020776 180 LGKWTVIYFGF----THCPDICPDELQKLAAA 207 (321)
Q Consensus 180 kGK~vLL~Fwa----twCp~vC~~elp~L~~l 207 (321)
+.++|+|+--. +|||+ |......|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~-C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGF-SRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcH-HHHHHHHHHHc
Confidence 45666666433 69998 98866666554
|
The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 321 | ||||
| 2gqk_A | 173 | Solution Structure Of Human Ni(Ii)-Sco1 Length = 17 | 2e-49 | ||
| 2hrf_A | 173 | Solution Structure Of Cu(i) P174l Hsco1 Length = 17 | 2e-48 | ||
| 2ggt_A | 164 | Crystal Structure Of Human Sco1 Complexed With Nick | 3e-48 | ||
| 1wp0_A | 165 | Human Sco1 Length = 165 | 6e-46 | ||
| 2b7j_A | 200 | Crystal Structure Of Yeast Sco1 With Copper Bound L | 5e-42 | ||
| 2rli_A | 171 | Solution Structure Of Cu(i) Human Sco2 Length = 171 | 4e-41 | ||
| 2k6v_A | 172 | Solution Structures Of Apo Sco1 Protein From Thermu | 2e-20 | ||
| 1xzo_A | 174 | Identification Of A Disulfide Switch In Bssco, A Me | 4e-08 | ||
| 1on4_A | 174 | Solution Structure Of Soluble Domain Of Sco1 From B | 6e-08 | ||
| 4hde_A | 170 | The Crystal Structure Of A Sco1SENC FAMILY LIPOPROT | 5e-06 | ||
| 2l5o_A | 153 | Solution Structure Of A Putative Thioredoxin From N | 1e-04 |
| >pdb|2GQK|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1 Length = 173 | Back alignment and structure |
|
| >pdb|2HRF|A Chain A, Solution Structure Of Cu(i) P174l Hsco1 Length = 173 | Back alignment and structure |
|
| >pdb|2GGT|A Chain A, Crystal Structure Of Human Sco1 Complexed With Nickel. Length = 164 | Back alignment and structure |
|
| >pdb|1WP0|A Chain A, Human Sco1 Length = 165 | Back alignment and structure |
|
| >pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound Length = 200 | Back alignment and structure |
|
| >pdb|2RLI|A Chain A, Solution Structure Of Cu(i) Human Sco2 Length = 171 | Back alignment and structure |
|
| >pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus Thermophilus Length = 172 | Back alignment and structure |
|
| >pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member Of The Sco Family Of Cytochrome C Oxidase Assembly Proteins Length = 174 | Back alignment and structure |
|
| >pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From Bacillus Subtilis Length = 174 | Back alignment and structure |
|
| >pdb|4HDE|A Chain A, The Crystal Structure Of A Sco1SENC FAMILY LIPOPROTEIN FROM BACILLUS Anthracis Str. Ames Length = 170 | Back alignment and structure |
|
| >pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From Neisseria Meningitidis Length = 153 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 321 | |||
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 3e-85 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 8e-85 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 1e-82 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 3e-75 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 4e-63 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 6e-53 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 8e-11 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 2e-10 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 3e-10 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 1e-09 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 2e-09 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 8e-09 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 2e-08 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 6e-08 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 6e-08 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 6e-08 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 8e-08 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 8e-08 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 2e-07 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 2e-07 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 3e-07 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 9e-07 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 1e-06 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 3e-06 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 3e-06 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 5e-06 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 6e-06 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 9e-06 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 1e-05 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 1e-05 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 1e-05 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 2e-05 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 3e-05 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 3e-05 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 4e-05 | |
| 2ywn_A | 157 | Peroxiredoxin-like protein; redox protein, structu | 4e-05 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 8e-05 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 1e-04 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 2e-04 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 2e-04 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 4e-04 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 5e-04 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 5e-04 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 5e-04 |
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 3e-85
Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 2/170 (1%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
GK ++GGPF L + G TEK+ LGK+++IYFGF++CPDICPDEL KL ++ +
Sbjct: 14 GYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSS 73
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT-- 271
GI + P FI+ DP RD+ ++EY+ +FHP ++GLTG+ DE++N + YRVY+
Sbjct: 74 KYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPN 133
Query: 272 AEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ DYLVDHSI YLM P+ +FV G+N D + D I++ +K Y
Sbjct: 134 VKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVP 183
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 8e-85
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI-KEN 214
G G F L++H G+ + DF G+W ++YFGFTHCPDICPDEL+KL V ++ E
Sbjct: 1 GSFTGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEP 60
Query: 215 SGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE- 273
+ P FI+VDPERD VE + YV++FHP+L+GLTGS ++ + +YRVYY +
Sbjct: 61 GLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKD 120
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
ED DY+VDHSI +YL++P F ++G++ ++D + + + ++
Sbjct: 121 EDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 167
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 1e-82
Identities = 84/163 (51%), Positives = 116/163 (71%), Gaps = 2/163 (1%)
Query: 160 IGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI-KENSGID 218
+GGPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K+ VD+I + D
Sbjct: 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD 61
Query: 219 IVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT-AEEDSD 277
+ P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY +ED D
Sbjct: 62 LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDED 121
Query: 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
Y+VDH+I+MYL+ P EF+ +FG+N +A I ++ Y+
Sbjct: 122 YIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 164
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 3e-75
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 159 AIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGID 218
F L G V F K +++FGFT CPD+CP L L A +K+ +
Sbjct: 14 PKPVDFALEGPQGP-VRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQER 72
Query: 219 IVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT-AEEDSD 277
+ F+SVDPERD E Y K FHP +GL+GSP+ +R A+ + V+Y K+ +
Sbjct: 73 VQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGE 132
Query: 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
YLVDH+ +++ V + + D ++ +++
Sbjct: 133 YLVDHTATTFVVKEG-RLVLLYSPDKAEA--TDRVVADLQAL 171
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 4e-63
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVP 221
PF N DGKNV+ + G+ + F FT+C ICP + K+K ID+
Sbjct: 14 EPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRI 72
Query: 222 AFISVDPERDTVEQVREYVKEFHPKLIG---LTG-SPDEIRNIAR-AYRVYYMKTAEEDS 276
SVDPE D +Q++++ + LTG S EI A +++ K +
Sbjct: 73 ISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKK---PEG 129
Query: 277 DYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ V H YL+ P + +K + + D II ++K
Sbjct: 130 EDQVIHQSSFYLVGPDGKVLKDYNGVENTP--YDDIISDVKSAST 172
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 6e-53
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 12/168 (7%)
Query: 158 AAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI 217
+ G L++ G K+ GK ++ +THC CP + L + K+ G
Sbjct: 5 TYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP-GK 63
Query: 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIG---LTG-SPDEIRNIARAYRVYYMKTAE 273
D + DP +DT+E ++ + KE+ G + + +++ + A +M
Sbjct: 64 DFWVITFTFDP-KDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMT--- 119
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNSLADGIIKEIKQYK 320
+D+ H V+ ++SP+++ + G N + + + +
Sbjct: 120 AGNDF--IHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEGH 165
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-11
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
+ K G + V+ +GK +YF + CP C LA +K
Sbjct: 3 GLAKYLPG--ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHV 59
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN-IARAYRV 266
++V IS D + +Y + + L + + + + V
Sbjct: 60 AKNFEVV--LISWD---ENESDFHDYYGKMP--WLALPFDQRSTVSELGKTFGV 106
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
+ K G + + V K GK YF + CP +L DK E
Sbjct: 3 GLDKYLPG--IEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHE 59
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
+ ++V F + D + + Y + P L + ++ +++ + V
Sbjct: 60 SKNFEVV--FCTWD---EEEDGFAGYFAK-MPWLAVPFAQSEAVQKLSKHFNV 106
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-10
Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 7/113 (6%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
S K ++ ++ GK YF + CP +L E
Sbjct: 1 SGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAE 59
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
+++ IS D ++ E ++Y + + + + + V
Sbjct: 60 KKNFEVM--LISWD---ESAEDFKDYYAKMPWLALPF-EDRKGMEFLTTGFDV 106
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 1e-09
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 164 FKLINHDGKNVTEKDFL--GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE-NSGIDIV 220
KL+ + V + L YF CP C LA ++ + ++ +I+
Sbjct: 7 IKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP-CRGFTPILADMYSELVDDSAPFEII 65
Query: 221 PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
F+S D + + + +Y+ E H + + N+ Y +
Sbjct: 66 --FVSSD---RSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGI 106
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-09
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 13/133 (9%)
Query: 137 QHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDI 196
H +S+ + G A G + GK YF + CP
Sbjct: 4 SHHHHHHSSGLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPP- 62
Query: 197 CPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT---GS 253
C +L +K ++ +I+ S D E D ++ K+ L+ +
Sbjct: 63 CRGFTPQLVEFYEKHHDSKNFEII--LASWDEEEDD-------FNAYYAKMPWLSIPFAN 113
Query: 254 PDEIRNIARAYRV 266
+ + + + Y V
Sbjct: 114 RNIVEALTKKYSV 126
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-09
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
+GK A + + G D K+T+++F + C C E KL K +
Sbjct: 6 LLGKKAP--NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGH-CQQETPKLYDWWLKNRA 62
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY 267
GI + +++ E+ ++++ + Y +Y
Sbjct: 63 K-GIQVY--AANIE---RKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY 110
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-08
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 154 SVGKAAIGGP---FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAA--V 208
S K +G F G T F ++T+++ C C + ++ L A+ +
Sbjct: 1 SNAKNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHA-CAEMIEGLKASPVI 59
Query: 209 DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS-PDEIRNIARAYRVY 267
+ + ++ I D + +++ +++ +F G + + Y +
Sbjct: 60 NGFTAAKKLKVL--SIYPD---EELDEWKKHRNDF--AKEWTNGYDKELVIKNKNLYDLR 112
Query: 268 YMKTAEEDSDYLVD 281
+ T YL+D
Sbjct: 113 AIPTL-----YLLD 121
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-08
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211
K A P F L + GK V+ D GK T+I F F CP C E+ K+ +
Sbjct: 2 SLDSKTA---PAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDY 57
Query: 212 KENSGIDIVPAFISVDPERDTVEQVREYVKEFH---PKLIGLTGSPDEIRNIARAYRVYY 268
K ++ ++ D +E VR+YVK++ + + + +A+
Sbjct: 58 KNK-NFQVL--AVAQP--IDPIESVRQYVKDYGLPFTVMYDADKA------VGQAFGTQV 106
Query: 269 MKTAEEDSDYLVD 281
T+ L+
Sbjct: 107 YPTS-----VLIG 114
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-08
Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 157 KAAIGGP----FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212
G P F + +GK V+ D GK+ I T C C EL L +K
Sbjct: 2 SLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGP-CRGELPALKELEEKYA 60
Query: 213 ENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
I V +S D + V + +L G+ R AY +
Sbjct: 61 GK-DIHFV--SLSCD---KNKKAWENMVTKD--QLKGIQLHMGTDRTFMDAYLI 106
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-08
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
+ G A I+ G +V+ DF GK+ ++ F F C C E L + K+
Sbjct: 4 ATGSVAP--AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSW-CRKETPYLLKTYNAFKD 60
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
G I +S D E ++ ++E + D+++++ +Y +
Sbjct: 61 K-GFTIY--GVSTD---RREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-08
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F G GK V++F CP C E L+ N + V
Sbjct: 7 FTATTLSGAPFDGASLQGKPAVLWFWTPWCP-FCNAEAPSLSQVA---AANPAVTFV--G 60
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM 269
I+ V ++ +V +++ L D I Y V +
Sbjct: 61 IATR---ADVGAMQSFVSKYNLNFTNLN---DADGVIWARYNVPWQ 100
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-08
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAA--AVDKI 211
+ G A F + G N ++T+++F C + C + A A ++
Sbjct: 2 NAGMKAA--DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSN-CRKFEKLFAEIPAFVEM 58
Query: 212 KENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM 269
EN + ++ I D R E+ I +I + Y +
Sbjct: 59 VENGTLRVL--AIYPDENR---EEWATKAVYMPQGWIVGWNKAGDI-RTRQLYDIRAT 110
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
S G A F L + +GK + D GK + F T C C E +A K
Sbjct: 1 SEGSDAP--NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKS 57
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFH---PKLIGLTGSPDEIRNIARAYRVYYMK 270
G++IV ++V ++ V ++K + P ++ + AY V +
Sbjct: 58 Q-GVEIV--AVNVG---ESKIAVHNFMKSYGVNFPVVLDTDRQ------VLDAYDVSPLP 105
Query: 271 TAEEDSDYLVD 281
T +L++
Sbjct: 106 TT-----FLIN 111
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)
Query: 144 SASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQK 203
+A +A V + F L DG+ ++ + G +++F CP C
Sbjct: 2 NAPRAAGHSEEVLEREA--SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPS-CVYMADL 58
Query: 204 LAAAVDKIKE------NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP--D 255
L +K +E + + ++ E ++F G
Sbjct: 59 LDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKF-IANYGDPSWIMVM 117
Query: 256 EIRNIARAYRVYYM 269
+ ++ + V +
Sbjct: 118 DDGSLVEKFNVRSI 131
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 13/135 (9%)
Query: 148 AVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAA 207
+ + + D + + K T+I F + CP +C EL +
Sbjct: 7 KIVDAGTATVPHT--MSTMKTADNRPASVYLKKDKPTLIKFWASWCP-LCLSELGQAEKW 63
Query: 208 VDKIKENSGIDIVP-AFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
K + +++ A E+ E + Y +PKL +T D IA+ +
Sbjct: 64 AQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVT---DNGGTIAQNLNI 119
Query: 267 YYMKTAEEDSDYLVD 281
+ L+
Sbjct: 120 SVYPSW-----ALIG 129
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 9e-07
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 157 KAAIGGP---FKLINHDGKNVT--EKDFLGKWTVIYFGFTHCPDICPD--ELQKLAAAVD 209
K+ IG F L N G+ +T F K +I F + +L
Sbjct: 4 KSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDS-ISQKQSNSELREIYK 62
Query: 210 KIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH---PKLIGLTGSPDEIRNIARAYRV 266
K K+N I ++ IS+D +Q ++ +K ++ G E +A+ Y +
Sbjct: 63 KYKKNKYIGML--GISLD---VDKQQWKDAIKRDTLDWEQVCDFGGLNSE---VAKQYSI 114
Query: 267 YYM 269
Y +
Sbjct: 115 YKI 117
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 15/126 (11%)
Query: 144 SASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQK 203
+++ G A FKL G+N + + GK ++ F + CP C DE+
Sbjct: 6 GKAESDAPLVRTGALAP--NFKLPTLSGENKSLAQYRGKIVLVNFWASWCPY-CRDEMPS 62
Query: 204 LAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARA 263
+ V + + ++ ++V+ ++ E + L+ D + +
Sbjct: 63 MDRLVKSFPKG-DLVVLA--VNVE------KRFPEKYRRAPVSFNFLS---DATGQVQQR 110
Query: 264 YRVYYM 269
Y +
Sbjct: 111 YGANRL 116
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 152 GPSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK 210
G+ P F L++ G+ VT ++++ + C C E L +
Sbjct: 4 AVKPGEPL---PDFLLLDPKGQPVTPATVSKPAVIVFWA-SWCTV-CKAEFPGL----HR 54
Query: 211 IKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY 267
+ E +G+ IS + RDT E V EY+K + + L D +A ++V
Sbjct: 55 VAEETGVPFY--VISRE-PRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL 108
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213
+G+ A F + DGK VT GK ++ F + C C E+ + + K
Sbjct: 8 RIGEMAP--DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV-CRKEMPFIEKDIWL-KH 63
Query: 214 NSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS--PDEIRNIARAYRV 266
D I +D + + +E+V + K G+T D +I Y +
Sbjct: 64 KDNADFA--LIGIDRD-EPLEKVLAFAKST-----GVTYPLGLDPGADIFAKYAL 110
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F DG + + LGK V++F CP C E + + + V
Sbjct: 8 FSAKTLDGHDFHGESLLGKPAVLWFWAPWCP-TCQGEAPVVGQVA---ASHPEVTFV--G 61
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY 267
++ D V ++E+V ++ + T D ++ + V
Sbjct: 62 VAGL---DQVPAMQEFVNKYP--VKTFTQLADTDGSVWANFGVT 100
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK 210
Q + A F + DGK + GK ++ F T CP C E+ +
Sbjct: 6 QADARPTPAP--SFSGVTVDGKPFSSASLKGKAYIVNFFATWCPP-CRSEIPDMVQVQKT 62
Query: 211 IKENSGIDIVPAFISVDPERDTVEQVREYVKEFH---PKLIGLTGSPDEIRNIARAYRVY 267
G V I+V+ + + V+ Y+K P ++ N +
Sbjct: 63 WASR-GFTFV--GIAVN---EQLPNVKNYMKTQGIIYPVMMATPELIRA-FNGYIDGGIT 115
Query: 268 YM 269
+
Sbjct: 116 GI 117
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-06
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLG-KWTVIYF---GFTHCPDICPDELQKLAAA 207
+VG A P F L + + + VT + + G K ++ F FT IC EL +L
Sbjct: 9 LNVGATA---PDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTG---ICQGELDQLRDH 62
Query: 208 VDKIKENSGIDIVPAFISVDPE 229
+ + + D ISV P
Sbjct: 63 LPEFEN---DDSAALAISVGPP 81
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F L +G+ V D G+ ++ F T CP C +E+ + + ++
Sbjct: 11 FTLNTLNGEVVKLSDLKGQVVIVNFWATWCPP-CREEIPSMMRLNAAMAGK-PFRMLC-- 66
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVD 281
+S+D V E+ ++ L D + + + Y + +++D
Sbjct: 67 VSID--EGGKVAVEEFFRKTG---FTLPVLLDADKRVGKLYGTTGVPET-----FVID 114
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 18/137 (13%)
Query: 146 SQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLA 205
S + + + I +L + G + D GK +I F + L
Sbjct: 2 SLEIPEDKIKEASII--DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAM-SAAHNLALR 58
Query: 206 AAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH-PKLIGLTGSPDEIRNIARAY 264
+K G +I IS+D + + + G+ Y
Sbjct: 59 ELYNKYASQ-GFEIY--QISLDGDE---HFWKTSADNLPWVCVRDANGAYSS---YISLY 109
Query: 265 RVYYMKTAEEDSDYLVD 281
V + + +LV+
Sbjct: 110 NVTNLPSV-----FLVN 121
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211
G + G A + + +D K + + LG++T++ F + + +LA V+K
Sbjct: 6 GVNPGDLAPR--IEFLGNDAK-ASFHNQLGRYTLLNFWAAYDAE-SRARNVQLANEVNKF 61
Query: 212 KENSGIDIVPAFISVDPERDTVEQ-VREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM 269
+ I + IS+D + + V+ + + G E + + Y +
Sbjct: 62 GPD-KIAMCS--ISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE---LYKKYDLRKG 114
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-05
Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 170 DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVP-AFISVDP 228
+ + ++ +D GK V+ CP C + A + ++ + S + ++ +
Sbjct: 19 NHEGLSNEDLRGKVVVVEVFQMLCPG-CVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHH 77
Query: 229 ERDTVEQVREYVKEF---HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVD 281
+ T E ++ ++ EF P + + I + + YR+ + L D
Sbjct: 78 DVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSI-----ILAD 128
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-05
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 32/150 (21%)
Query: 131 YDKEKEQHIEEINSASQAVKQGPSV---GKAAIGGPFK--LINH---DGKNVTEKDFLGK 182
Y+ + Q ++ A ++ +V G G K + K + DF
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---KTWVALDVCLSYKVQCKMDFKIF 185
Query: 183 WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242
W + + P+ + LQKL +D S D + + ++ ++
Sbjct: 186 W--LNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSD------HSSNIKLRIHSIQAELRR 236
Query: 243 F-----HPK-LIGLTGSPDEIRN--IARAY 264
+ L+ L ++N A+
Sbjct: 237 LLKSKPYENCLLVL----LNVQNAKAWNAF 262
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
+ DGK DF GK ++ T C C E+ L K+ ++V
Sbjct: 43 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSGP-NFEVVA-- 98
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
I++D E+ + ++KE L L D+ + + +
Sbjct: 99 INID--TRDPEKPKTFLKEA--NLTRLGYFNDQKAKVFQDLKAIG 139
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 17/130 (13%)
Query: 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214
+ + + +G+ E+ K T+I+F C C + + ++ DK ++
Sbjct: 3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHL-CKEAMPQVNEFRDKYQD- 60
Query: 215 SGIDIVPAFISVDPERDTVEQVREYVKEF---HPKLIGLTGSPDEIRNIARAYRVYYMKT 271
+++V + + +++E E P + D + A+ Y+
Sbjct: 61 -QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFV------DSDHALTDAFENEYVPA 113
Query: 272 AEEDSDYLVD 281
Y+ D
Sbjct: 114 Y-----YVFD 118
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 136 EQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYF 188
H + + G ++ + + L+ T D+ +W V+YF
Sbjct: 8 HHHSSGLVPRGSHMNIGDTLNHSLL--NHPLMLSGSTCKTLSDYTNQWLVLYF 58
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 159 AIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGID 218
++ D + + ++ T C C E+ ++ K+ +D
Sbjct: 2 SLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGP-CRKEMPAMSKWYKAQKKG-SVD 59
Query: 219 IVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAY 264
+V I++D + + ++K+ + RN + Y
Sbjct: 60 MV--GIALDTS----DNIGNFLKQTPVSYPIWRYTGANSRNFMKTY 99
|
| >2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-05
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAV 208
+G+ A P F+L + + K V GK V+ F FT +C E+ ++
Sbjct: 4 VEIGELA---PDFELPDTELKKVKLSALKGKVVVLAFYPAAFT--Q-VCTKEMCTFRDSM 57
Query: 209 DKIKENSGIDIVPAFISVDPE 229
K + ++ ISVDP
Sbjct: 58 AKFNQ-VNAVVLG--ISVDPP 75
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F+L+ DGK D+ GK + F + C IC L + ++ + +
Sbjct: 5 FELMGVDGKTYRLSDYKGKKVYLKFWASWCS-ICLASLPDTDEIAKEAGDD-YVVLTVVS 62
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM 269
E + + + K L D + Y V
Sbjct: 63 PGHKGE-QSEADFKNWYKGL--DYKNLPVLVDPSGKLLETYGVRSY 105
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAV 208
VG A F L D + DF GK V+ T IC + ++ +
Sbjct: 16 LQVGDKA---LDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDT---GICSTQTRRFNEEL 69
Query: 209 DKIKENSGIDIVPAFISVDP 228
+ + V +S+D
Sbjct: 70 AGLD-----NTVVLTVSMDL 84
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAV 208
VG A P ++ D + VI T +C E +K +
Sbjct: 21 LKVGDRA---PEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDT---PVCETETKKFNEIM 74
Query: 209 DKIKENSGIDIVPAFISVD 227
++ + +S+D
Sbjct: 75 AGME-----GVDVTVVSMD 88
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/119 (10%), Positives = 36/119 (30%), Gaps = 11/119 (9%)
Query: 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212
+ + + +G + DF + ++ C C E L ++++
Sbjct: 31 EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAP-CRSESDDLQIIHEELQ 89
Query: 213 ENSGIDIVP-AFISVDPERDTVEQVREYVKEF---HPKLIGLTGSPDEIRNIARAYRVY 267
D + ++ + + +++V + +P + D A +
Sbjct: 90 AAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIY------DPPFMTAASLGGV 142
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Length = 200 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAV 208
P +G A F L+ D +V F GK V+ T +C ++K
Sbjct: 52 PQIGDKA---KDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDT---GVCAASVRKFNQLA 105
Query: 209 DKIKENSGIDIVPAFISVDP 228
+++ + V IS D
Sbjct: 106 GELE-----NTVVLCISSDL 120
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 154 SVGKAAIGGP---FKL--INHDG--KNVTEKDFLGKWTVIYF---GFTHCPDICPDELQK 203
S G+A P F + +G K V + GKW V++F FT +CP E+ +
Sbjct: 2 SCGEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTF---VCPTEICQ 58
Query: 204 LAAAVDKIKENSGIDIVPAFISVD 227
+ V + + G +++ S+D
Sbjct: 59 FSDRVKEFSDI-GCEVL--ACSMD 79
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Length = 188 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 22/118 (18%)
Query: 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDI--CPDELQKLAAAVDKIK 212
+ I +L + G F + F HCP + EL LA ++ +
Sbjct: 9 LESPLI--DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALA---ERYR 63
Query: 213 ENSGIDIVPAFISVDPER---DTVEQVREYVKEF---HPKLIGLTGSPDEIRNIARAY 264
+ V + D E+ D E++ + +E P L+ DE + +A+AY
Sbjct: 64 G--KVAFV-GINANDYEKYPEDAPEKMAAFAEEHGIFFPYLL------DETQEVAKAY 112
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 16/80 (20%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYF---GFTHCPDICPDELQKLAAAV 208
+ G A P F ++++D VT D+ GK +I T +C + +K
Sbjct: 20 INEGDFA---PDFTVLDNDLNQVTLADYAGKKKLISVVPSIDT---GVCDQQTRKFN--- 70
Query: 209 DKIKENSGIDIVPAFISVDP 228
+ S + + IS D
Sbjct: 71 ---SDASKEEGIVLTISADL 87
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 321 | |||
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.97 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.97 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 99.97 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 99.97 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 99.96 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.95 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 99.94 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.94 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 99.94 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 99.94 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 99.94 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.93 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.93 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 99.93 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.93 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.93 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.93 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.93 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 99.93 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.92 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.92 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.92 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.92 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.92 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.92 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.92 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 99.92 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.92 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.92 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.92 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.92 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.92 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.92 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 99.92 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.92 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.92 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.91 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.91 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 99.91 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.91 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 99.91 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 99.91 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 99.91 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.91 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.91 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 99.91 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 99.91 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 99.91 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.91 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.91 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.9 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.9 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.9 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.9 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 99.9 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.9 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 99.9 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 99.9 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 99.9 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 99.9 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 99.9 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 99.9 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.9 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 99.9 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 99.9 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 99.9 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 99.89 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 99.89 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 99.89 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.89 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.89 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 99.89 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.89 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.89 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.89 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.89 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.89 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 99.89 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 99.89 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 99.89 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 99.88 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 99.88 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 99.88 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 99.8 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 99.87 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 99.87 | |
| 3sbc_A | 216 | Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c | 99.87 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.87 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 99.86 | |
| 3tue_A | 219 | Tryparedoxin peroxidase; thioredoxin fold, peroxir | 99.86 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 99.86 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 99.86 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 99.85 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 99.76 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.85 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 99.84 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.84 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 99.84 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.83 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.82 | |
| 4eo3_A | 322 | Bacterioferritin comigratory protein/NADH dehydro; | 99.81 | |
| 4f82_A | 176 | Thioredoxin reductase; structural genomics, niaid, | 99.74 | |
| 2xhf_A | 171 | Peroxiredoxin 5; oxidoreductase, antioxidant enzym | 99.72 | |
| 1xiy_A | 182 | Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin | 99.71 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.6 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.59 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.58 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.58 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.54 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.51 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.46 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.44 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.44 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.42 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.4 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.38 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.38 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.08 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.37 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.37 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.37 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.37 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.36 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.36 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.35 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.35 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.35 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.35 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.35 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.35 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.34 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.34 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.34 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.33 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.33 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.33 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.32 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.32 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.32 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.32 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.32 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.31 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.31 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.3 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.3 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.3 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.29 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.29 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.28 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.28 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.28 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.27 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.27 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.27 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.26 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.26 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.26 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.25 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.25 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.24 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.24 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.24 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.24 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.24 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.24 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.24 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.23 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.23 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.22 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.22 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.21 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.2 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.2 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.2 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.19 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.19 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.19 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.19 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.18 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.17 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.17 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.16 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.13 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 98.74 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.12 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.1 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.09 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.08 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.07 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.07 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.07 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.05 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 98.99 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 98.96 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.94 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.93 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 98.91 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 98.91 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 98.88 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 98.84 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.82 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 98.82 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 98.82 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 98.82 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.81 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.8 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 98.77 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 98.75 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.75 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 98.74 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.74 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 98.74 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.72 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.71 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.7 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.69 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.68 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 98.64 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.62 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.62 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.61 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.56 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 98.47 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.44 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 98.43 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 98.4 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.37 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.29 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 98.29 | |
| 4h86_A | 199 | Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch | 98.27 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.25 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.22 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.19 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 98.15 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.14 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 98.05 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.97 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 97.95 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 97.84 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 97.8 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 97.8 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 97.68 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 97.66 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 97.66 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.6 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 97.44 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 97.4 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 97.39 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.33 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 97.29 | |
| 3c7m_A | 195 | Thiol:disulfide interchange protein DSBA-like; red | 97.23 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 96.84 | |
| 3bci_A | 186 | Disulfide bond protein A; thiol-disulfide oxidored | 96.8 | |
| 3l9s_A | 191 | Thiol:disulfide interchange protein; thioredoxin-f | 96.74 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 96.7 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 96.62 | |
| 3f4s_A | 226 | Alpha-DSBA1, putative uncharacterized protein; thi | 96.6 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 96.48 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 96.42 | |
| 3gha_A | 202 | Disulfide bond formation protein D; BDBD, DSBA-lik | 96.37 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 96.34 | |
| 3kzq_A | 208 | Putative uncharacterized protein VP2116; protein w | 96.29 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 96.28 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 96.21 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 96.06 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 95.99 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 95.76 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 95.45 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 95.4 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 95.38 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 95.3 | |
| 2in3_A | 216 | Hypothetical protein; DSBA family, FRNE-like subfa | 95.27 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 95.02 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 94.92 | |
| 3gmf_A | 205 | Protein-disulfide isomerase; oxidoreductase, PSI-2 | 94.6 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 94.57 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 94.42 | |
| 3tdg_A | 273 | DSBG, putative uncharacterized protein; thioredoxi | 93.4 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 93.12 | |
| 2axo_A | 270 | Hypothetical protein ATU2684; alpha beta protein., | 92.95 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 91.95 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 91.56 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 90.66 | |
| 2imf_A | 203 | HCCA isomerase, 2-hydroxychromene-2-carboxylate is | 88.57 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 87.81 | |
| 1z3e_A | 132 | Regulatory protein SPX; bacterial transcription re | 86.83 | |
| 3fz4_A | 120 | Putative arsenate reductase; APC61768, structural | 86.68 | |
| 3l78_A | 120 | Regulatory protein SPX; transcription, transcripti | 86.34 | |
| 3gkx_A | 120 | Putative ARSC family related protein; ARSC family | 85.13 | |
| 3gn3_A | 182 | Putative protein-disulfide isomerase; MCSG, PSI, s | 82.5 | |
| 2wci_A | 135 | Glutaredoxin-4; redox-active center, iron-sulfur c | 81.48 | |
| 1aba_A | 87 | Glutaredoxin; electron transport; HET: MES; 1.45A | 81.47 |
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=218.12 Aligned_cols=160 Identities=53% Similarity=1.068 Sum_probs=144.8
Q ss_pred CCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcC-CcEEEEEEeeCCCCCCHHHHHHH
Q 020776 161 GGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSG-IDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 161 ~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g-~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
+|+|+++|.+|+++++++++||++||+||++||+++|..+++.|++++++|+++.+ .++.+|+|++|+++|+++.+++|
T Consensus 3 ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~ 82 (164)
T 2ggt_A 3 GGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANY 82 (164)
T ss_dssp CCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHH
T ss_pred CCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHH
Confidence 45999999999999999999999999999999997799999999999999986322 27999999999998999999999
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecC-CCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTA-EEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~-~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++++++|++++++.|....+++.|++...|.. .....|.+.|.+.+||||++|+|++++.+..+.+++.+.|++++++
T Consensus 83 ~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 162 (164)
T 2ggt_A 83 VKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP 162 (164)
T ss_dssp HHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHGG
T ss_pred HHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 999999999999988999999999999998843 2356788899999999999999999998888999999999999987
Q ss_pred Hh
Q 020776 319 YK 320 (321)
Q Consensus 319 ~k 320 (321)
++
T Consensus 163 ~~ 164 (164)
T 2ggt_A 163 YR 164 (164)
T ss_dssp GC
T ss_pred cC
Confidence 64
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=216.79 Aligned_cols=159 Identities=43% Similarity=0.963 Sum_probs=144.2
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhc-CCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS-GIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~-g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|+++|.+|+.+++++++||++||+||++||+++|..+++.|++++++|+++. ..++.+|+|++|+++|+++.+++|+
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~ 86 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV 86 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence 699999999999999999999999999999999779999999999999997621 1379999999999889999999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecC-CCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTA-EEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~-~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
++++++|+.+.++.+....+++.|++...|.. .....|.+.|.+++||||++|+|++++.+..+.+++.+.|++++++.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 87 QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999999998888888899999999988843 23457888999999999999999999988899999999999999887
Q ss_pred h
Q 020776 320 K 320 (321)
Q Consensus 320 k 320 (321)
+
T Consensus 167 ~ 167 (171)
T 2rli_A 167 R 167 (171)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=227.32 Aligned_cols=171 Identities=44% Similarity=0.904 Sum_probs=141.2
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.....+|+++++|+|+++|.+|+++++++++||++||+||++||+++|..++|.|++++++++++.+.++.+|+|++|++
T Consensus 10 ~~~~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~ 89 (200)
T 2b7k_A 10 EANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPA 89 (200)
T ss_dssp ------CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTT
T ss_pred hhHhccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCC
Confidence 34567888886679999999999999999999999999999999977999999999999999865344688999999999
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceE-ee-cCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY-MK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~-~p-~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+|+++.+++|+++++++|..++++.|....+++.||+.+ .| ....+..|.+.|.+++||||++|+|++.+.+..+.++
T Consensus 90 ~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~ 169 (200)
T 2b7k_A 90 RDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKT 169 (200)
T ss_dssp TCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTH
T ss_pred CCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHH
Confidence 999999999999999999999888899999999999983 44 2123456888999999999999999999988888899
Q ss_pred HHHHHHHHHHHHh
Q 020776 308 LADGIIKEIKQYK 320 (321)
Q Consensus 308 l~~~l~~~L~~~k 320 (321)
+.+.|.++|+.+.
T Consensus 170 ~~~~i~~~l~~l~ 182 (200)
T 2b7k_A 170 GVDKIVEHVKSYV 182 (200)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=225.44 Aligned_cols=157 Identities=24% Similarity=0.387 Sum_probs=128.7
Q ss_pred CCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
.+|.++| +|+|+|.+|+++++++++||+|||+||+||||.+|+.+++.|.+++++++++ +.++++|+||+||++|++
T Consensus 7 P~~~~~P--dF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~-~~~v~~v~isvDp~~Dtp 83 (170)
T 4hde_A 7 PLNWDLE--TFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEE-KLDVQFVSFSVDPDLDKP 83 (170)
T ss_dssp CCCBCCC--CCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHT-TCCCEEEEEESCTTTCCH
T ss_pred CCCCcCC--CcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcc-cccceeEeeecCcccccH
Confidence 3677777 9999999999999999999999999999999877999999999999999876 778999999999999999
Q ss_pred HHHHHHHHHhCC---CceeecCC-hHHHHHHH-HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC--CCChh
Q 020776 234 EQVREYVKEFHP---KLIGLTGS-PDEIRNIA-RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK--NNDVN 306 (321)
Q Consensus 234 e~l~~~~~~~~~---~~~~l~~~-~d~~~~~a-~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~--~~~~~ 306 (321)
+.+++|+++++. .|.++++. .+....++ ..|++...+ ...|.+.|++.+||||++|+|+.+|.+ ..+.+
T Consensus 84 ~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~----~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~ 159 (170)
T 4hde_A 84 ENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDK----PENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYE 159 (170)
T ss_dssp HHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBC----CTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHH
T ss_pred HHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccC----CCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHH
Confidence 999999999985 46677764 33333333 345554332 346889999999999999999988755 34456
Q ss_pred HHHHHHHHHHH
Q 020776 307 SLADGIIKEIK 317 (321)
Q Consensus 307 ~l~~~l~~~L~ 317 (321)
++.++|+++++
T Consensus 160 ~l~~~ik~Lle 170 (170)
T 4hde_A 160 DIIRDMKRLAE 170 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 77777776653
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=210.74 Aligned_cols=156 Identities=20% Similarity=0.328 Sum_probs=131.2
Q ss_pred CCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
.+|+++| .+|+++|.+|+++++++++||++||+||++||+++|..+++.|++++++++++ +.++++|+|++|+ +|++
T Consensus 2 ~~G~~~P-~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~-~~~~~vv~is~d~-~d~~ 78 (170)
T 3me7_A 2 SLGTYVP-GDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTP-GKDFWVITFTFDP-KDTL 78 (170)
T ss_dssp CTTCBCC-TTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCB-TTTBEEEEEECCT-TCCH
T ss_pred CCCCcCC-CCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhc-CCceEEEEEECCC-CCCH
Confidence 3566553 29999999999999999999999999999999867999999999999999764 5579999999999 7999
Q ss_pred HHHHHHHHHhCCCce---e-ecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC-CCChhHH
Q 020776 234 EQVREYVKEFHPKLI---G-LTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK-NNDVNSL 308 (321)
Q Consensus 234 e~l~~~~~~~~~~~~---~-l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~-~~~~~~l 308 (321)
+.+++|+++++.+++ + +.++.+...+++++||+...+. .|.+.|.+.+||||++|+|++++.+ ..+++++
T Consensus 79 ~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i 153 (170)
T 3me7_A 79 EDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTA-----GNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEF 153 (170)
T ss_dssp HHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEE-----TTEEECCCEEEEECTTSBEEEEEESSSCCHHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecC-----CCccccCceEEEECCCCeEEEEEeCCCCCHHHH
Confidence 999999999996553 3 3467788999999999877652 4778899999999999999987544 4677777
Q ss_pred HHHHHHHHH
Q 020776 309 ADGIIKEIK 317 (321)
Q Consensus 309 ~~~l~~~L~ 317 (321)
.+.|.++..
T Consensus 154 ~~~l~~~~~ 162 (170)
T 3me7_A 154 VNALRLARG 162 (170)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhc
Confidence 777766543
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-28 Score=203.82 Aligned_cols=159 Identities=31% Similarity=0.637 Sum_probs=134.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
..+|+++| +|+++|.+| .+++++++||++||+||++||+++|..++|.|++++++|+++.+.++.+|+|++|+++|+
T Consensus 10 ~~~G~~~p--~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~ 86 (172)
T 2k6v_A 10 RLLNPKPV--DFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDP 86 (172)
T ss_dssp EEEEEEEC--CCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCC
T ss_pred cccCCCCC--CeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCC
Confidence 34677777 999999999 999999999999999999999966999999999999999764113589999999998899
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCC-CCCCcccccceEEEEEcCCCeEEEEeCCCC--ChhHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE-EDSDYLVDHSIVMYLMSPKMEFVKFFGKNN--DVNSLA 309 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~-~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~--~~~~l~ 309 (321)
++.+++|+++++.+|+++.++.+....+++.|++....... ....|.+.+.|++|||| +|+|++++.+.. +.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~ 165 (172)
T 2k6v_A 87 PEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVV 165 (172)
T ss_dssp HHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHH
Confidence 99999999999999999988777778999999997655321 13457788999999999 999999987766 666666
Q ss_pred HHHHHH
Q 020776 310 DGIIKE 315 (321)
Q Consensus 310 ~~l~~~ 315 (321)
+.|+++
T Consensus 166 ~~l~~l 171 (172)
T 2k6v_A 166 ADLQAL 171 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 666553
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=198.40 Aligned_cols=161 Identities=25% Similarity=0.419 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|+++| +|+++|.+|+.+++++++||++||+||++||++.|..+++.|.+++++|+++ +.++.+|+|++|+++
T Consensus 5 ~~l~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~ 81 (174)
T 1xzo_A 5 IKDPLNYEVE--PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRIISFSVDPEN 81 (174)
T ss_dssp CCSCCCEECC--CCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-TCCCEEEEEESCTTT
T ss_pred CcCccccccC--CcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhc-CCcEEEEEEEeCCCC
Confidence 4578899998 9999999999999999999999999999999933999999999999999887 446899999999988
Q ss_pred CCHHHHHHHHHHhCCCc---eeecC-ChHHHHHHH-HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC--
Q 020776 231 DTVEQVREYVKEFHPKL---IGLTG-SPDEIRNIA-RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN-- 303 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~---~~l~~-~~d~~~~~a-~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~-- 303 (321)
|+++.+++|+++++++| +.+.+ +......+. ..|++.+.. ....|.+.|.|++||||++|+|++++.+..
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~ 158 (174)
T 1xzo_A 82 DKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKK---PEGEDQVIHQSSFYLVGPDGKVLKDYNGVENT 158 (174)
T ss_dssp CCHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCC---CSSCCSCCSCCEEEEECTTSEEEEEEESSSSC
T ss_pred CCHHHHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEee---cCCCCeeeeeeEEEEECCCCeEEEEEcCCCCC
Confidence 99999999999999888 77754 222222222 234433322 123577888999999999999999886655
Q ss_pred ChhHHHHHHHHHHH
Q 020776 304 DVNSLADGIIKEIK 317 (321)
Q Consensus 304 ~~~~l~~~l~~~L~ 317 (321)
+.+++.+.|+++++
T Consensus 159 ~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 159 PYDDIISDVKSAST 172 (174)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHh
Confidence 46777777776654
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=190.47 Aligned_cols=142 Identities=20% Similarity=0.164 Sum_probs=126.0
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeecc--ccCCCeEEEEEecCCCCCC-cHHHHHHHHHHHHHH-hhhcCCcEEEEEEeeC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEK--DFLGKWTVIYFGFTHCPDI-CPDELQKLAAAVDKI-KENSGIDIVPAFISVD 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLs--d~kGK~vLL~FwatwCp~v-C~~elp~L~~l~~~~-~~~~g~~v~vV~IS~D 227 (321)
...+|+++| +|+++|.+|++++++ +++||++||+||++||+++ |..++|.|++++++| +++ ++.+|+|++|
T Consensus 4 ~l~~G~~~p--~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~---~~~~v~v~~d 78 (150)
T 3fw2_A 4 KSEIGKYAP--FFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK---YIGMLGISLD 78 (150)
T ss_dssp TTSTTSBCC--CCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS---SEEEEEEECC
T ss_pred cccCCCcCC--ccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC---CeEEEEEEcC
Confidence 467899999 999999999999999 9999999999999999966 999999999999999 644 6899999998
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
. +.+.+++|+++++++|+.+....+....+++.|++...|+ +||||++|+|++++. +.++
T Consensus 79 ~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~---~~~~ 138 (150)
T 3fw2_A 79 V---DKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPA--------------NILLSSDGKILAKNL---RGEE 138 (150)
T ss_dssp S---CHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSE--------------EEEECTTSBEEEESC---CHHH
T ss_pred C---CHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCe--------------EEEECCCCEEEEccC---CHHH
Confidence 4 5789999999999999999665444678999999988877 999999999999874 7888
Q ss_pred HHHHHHHHHHH
Q 020776 308 LADGIIKEIKQ 318 (321)
Q Consensus 308 l~~~l~~~L~~ 318 (321)
+.+.|++++++
T Consensus 139 l~~~l~~ll~~ 149 (150)
T 3fw2_A 139 LKKKIENIVEE 149 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888765
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-27 Score=199.03 Aligned_cols=152 Identities=19% Similarity=0.196 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
..+||+++| +|+++|.+|++++|++++||++||+|| ++|||+ |..++|.|+++++++++. ++.+|+||.
T Consensus 3 ~l~vG~~aP--dF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~~~~---~~~~v~vs~---- 72 (157)
T 4g2e_A 3 MVEIGELAP--DFELPDTELKKVKLSALKGKVVVLAFYPAAFTQV-CTKEMCTFRDSMAKFNQV---NAVVLGISV---- 72 (157)
T ss_dssp CCCTTSBCC--CCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC-------CCSCGGGGGGGC---SSEEEEEES----
T ss_pred cCCCCCCCc--CeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCc-cccchhhccccccccccc---CceEeeecc----
Confidence 468999999 999999999999999999999999999 999998 999999999999999866 677888996
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC-ChhHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN-DVNSLA 309 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~-~~~~l~ 309 (321)
|+++.+++|+++++++|+.+ .|..++++++||+........+ ...+.|++||||++|+|++.+.+.. ..+...
T Consensus 73 d~~~~~~~~~~~~~~~~p~l---~D~~~~v~~~ygv~~~~~~~~~---~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~ 146 (157)
T 4g2e_A 73 DPPFSNKAFKEHNKLNFTIL---SDYNREVVKKYNVAWEFPALPG---YVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPY 146 (157)
T ss_dssp SCHHHHHHHHHHTTCCSEEE---ECTTSHHHHHTTCEEECTTSTT---CEEECEEEEEECTTSBEEEEEEESSTTCCCCH
T ss_pred cchhHHHHHHHHcCCcEEEE---EcCCcHHHHHcCCccccccCCC---cceeeeeEEEECCCCEEEEEEECCCCCCCCCH
Confidence 45799999999999999999 6777899999999775432111 1235678999999999998753321 112224
Q ss_pred HHHHHHHHHH
Q 020776 310 DGIIKEIKQY 319 (321)
Q Consensus 310 ~~l~~~L~~~ 319 (321)
+++++.|+++
T Consensus 147 ~eil~~l~~L 156 (157)
T 4g2e_A 147 DEIEKVVKSL 156 (157)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4566666654
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=200.23 Aligned_cols=159 Identities=15% Similarity=0.239 Sum_probs=130.2
Q ss_pred hhhccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEE
Q 020776 146 SQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 224 (321)
Q Consensus 146 ~~~~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~I 224 (321)
....+.|..+|.++| +|+++|.+|++++|++++||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|
T Consensus 18 ~~~l~~Gd~ig~~aP--~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~-C~~el~~l~~l~~~~~~~---~~~vv~V 91 (179)
T 3ixr_A 18 GSHMNIGDTLNHSLL--NHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPG-SSTEGLEFNLLLPQFEQI---NATVLGV 91 (179)
T ss_dssp CCSSCTTCBCCHHHH--HCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHH-HHHHHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CcccCcCcccCCcCC--CeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHC---CCEEEEE
Confidence 344555556666699 999999999999999999999999998 999997 999999999999999876 6888999
Q ss_pred eeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 225 SVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
+.| +++.+++|+++++++|+++ .|...++++.|++...+... +.+...+.|++||||++|+|++.+ ....
T Consensus 92 s~D----~~~~~~~~~~~~~~~f~~l---~D~~~~~~~~~gv~~~~~~~--g~~~~~~~p~~~lID~~G~I~~~~-~~~~ 161 (179)
T 3ixr_A 92 SRD----SVKSHDSFCAKQGFTFPLV---SDSDAILCKAFDVIKEKTMY--GRQVIGIERSTFLIGPTHRIVEAW-RQVK 161 (179)
T ss_dssp ESC----CHHHHHHHHHHHTCCSCEE---ECTTCHHHHHTTCEEEECCC----CEEEECCEEEEECTTSBEEEEE-CSCC
T ss_pred cCC----CHHHHHHHHHHcCCceEEE---ECCchHHHHHcCCccccccc--CcccCCcceEEEEECCCCEEEEEE-cCCC
Confidence 965 5789999999999999999 56667899999998876522 223344678999999999999988 4445
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.+...+++.+.|++++
T Consensus 162 ~~~~~~~il~~l~~l~ 177 (179)
T 3ixr_A 162 VPGHAEEVLNKLKAHA 177 (179)
T ss_dssp STTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5556677777777765
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=193.65 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=128.6
Q ss_pred CCCCCCCCCCCCeE--EEcCCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFK--LINHDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~--l~d~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
...+|+++| +|+ ++|.+|+++++++++||++||+||+ +||++ |..+++.|++++++|+++ ++.+|+|++|
T Consensus 6 ~l~~G~~~P--~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~-C~~~~~~l~~~~~~~~~~---~~~vv~vs~d- 78 (163)
T 3gkn_A 6 DAVLELPAA--TFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPG-ATTEGLDFNALLPEFDKA---GAKILGVSRD- 78 (163)
T ss_dssp CCCCCCCGG--GGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHH-HHHHHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred ccccCCcCC--CccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCc-HHHHHHHHHHHHHHHHHC---CCEEEEEeCC-
Confidence 478999999 999 9999999999999999999999998 99997 999999999999999876 5778899975
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
+++.+++|+++++++|+++ .|...++++.|++...... .+.+...+.|++||||++|+|++.+ .....+..
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~~~~--~~~~~~~~~p~~~lid~~G~i~~~~-~~~~~~~~ 149 (163)
T 3gkn_A 79 ---SVKSHDNFCAKQGFAFPLV---SDGDEALCRAFDVIKEKNM--YGKQVLGIERSTFLLSPEGQVVQAW-RKVKVAGH 149 (163)
T ss_dssp ---CHHHHHHHHHHHCCSSCEE---ECTTCHHHHHTTCEEEEEE--TTEEEEEECCEEEEECTTSCEEEEE-CSCCSTTH
T ss_pred ---CHHHHHHHHHHhCCCceEE---ECCcHHHHHHhCCcccccc--ccccccCcceEEEEECCCCeEEEEE-cCCCcccC
Confidence 6899999999999999999 5666789999999875432 1122233477899999999999988 44555566
Q ss_pred HHHHHHHHHHHh
Q 020776 309 ADGIIKEIKQYK 320 (321)
Q Consensus 309 ~~~l~~~L~~~k 320 (321)
.+++.+.|+++.
T Consensus 150 ~~~il~~l~~l~ 161 (163)
T 3gkn_A 150 ADAVLAALKAHA 161 (163)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 777888887775
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-26 Score=191.96 Aligned_cols=145 Identities=20% Similarity=0.335 Sum_probs=125.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCe-EEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKW-TVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~-vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
..+|+++| +|+++|.+|+.+++++++||+ +||+|| ++||++ |..+++.|++++++|+++ ++.+|+|++|
T Consensus 2 l~~G~~~P--~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~---~v~vv~vs~d--- 72 (161)
T 3drn_A 2 VKVGDKAP--LFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPG-STREASAFRDNWDLLKDY---DVVVIGVSSD--- 72 (161)
T ss_dssp CCTTSBCC--CCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHH-HHHHHHHHHHTHHHHHTT---CEEEEEEESC---
T ss_pred CCCCCcCC--CeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHc---CCEEEEEeCC---
Confidence 46889998 999999999999999999998 999999 999997 999999999999999876 6888999974
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+++.+++|+++++++|+++ .|...++++.|++... ..+.|++||||++|+|++.+.+..+.+...+
T Consensus 73 -~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~----------~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 138 (161)
T 3drn_A 73 -DINSHKRFKEKYKLPFILV---SDPDKKIRELYGAKGF----------ILPARITFVIDKKGIIRHIYNSQMNPANHVN 138 (161)
T ss_dssp -CHHHHHHHHHHTTCCSEEE---ECTTSHHHHHTTCCCS----------SSCCCEEEEECTTSBEEEEEECSSCTTHHHH
T ss_pred -CHHHHHHHHHHhCCCceEE---ECCcHHHHHHcCCCCc----------CcccceEEEECCCCEEEEEEecCCCCCcCHH
Confidence 5799999999999999999 5566788999999851 1234459999999999999877666666777
Q ss_pred HHHHHHHHHh
Q 020776 311 GIIKEIKQYK 320 (321)
Q Consensus 311 ~l~~~L~~~k 320 (321)
++.+.|++++
T Consensus 139 ~il~~l~~l~ 148 (161)
T 3drn_A 139 EALKALKQIK 148 (161)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777664
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=192.88 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=124.4
Q ss_pred CCCCCCCCCeEEEcC--CCCeeeccccCCCeEEEEEecCCCCCCcHHH-HHHHHHHHHHHhhhcCCcEEEEEEeeCCC--
Q 020776 155 VGKAAIGGPFKLINH--DGKNVTEKDFLGKWTVIYFGFTHCPDICPDE-LQKLAAAVDKIKENSGIDIVPAFISVDPE-- 229 (321)
Q Consensus 155 vG~~aP~p~f~l~d~--~G~~vsLsd~kGK~vLL~FwatwCp~vC~~e-lp~L~~l~~~~~~~~g~~v~vV~IS~Dp~-- 229 (321)
.|+++| +|++++. +|+.+++++++||++||+||++||++ |..+ +|.|++++++|+++ ++.+|+|++|++
T Consensus 2 ~g~~aP--~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~-C~~~~~~~l~~l~~~~~~~---~v~~v~v~~~~~~~ 75 (158)
T 3eyt_A 2 NAMKAP--ELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPG-CVMHGIPLAQKVRAAFPED---KVAVLGLHTVFEHH 75 (158)
T ss_dssp CCEECC--CCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHH-HHHTHHHHHHHHHHHSCTT---TEEEEEEECCCSCG
T ss_pred CCCcCC--CceehhhhcCCCccCHHHhCCCEEEEEEECCcCcc-hhhhhhHHHHHHHHHhCcC---CEEEEEEEeccccc
Confidence 466777 9999994 88999999999999999999999998 9996 99999999999865 699999999864
Q ss_pred -CCCHHHHHHHHHHhCCCceeecCChHHHH-----HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 230 -RDTVEQVREYVKEFHPKLIGLTGSPDEIR-----NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 230 -~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~-----~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
.|+.+.+++|+++++++|+.+. |... .+++.|++...|+ +||||++|+|++++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~ 138 (158)
T 3eyt_A 76 EAMTPISLKAFLHEYRIKFPVGV---DQPGDGAMPRTMAAYQMRGTPS--------------LLLIDKAGDLRAHHFGDV 138 (158)
T ss_dssp GGSCHHHHHHHHHHTTCCSCEEE---ECCCSSSSCHHHHHTTCCSSSE--------------EEEECTTSEEEEEEESCC
T ss_pred ccCCHHHHHHHHHHcCCCceEEE---cCccchhhHHHHHHcCCCCCCE--------------EEEECCCCCEEEEEeCCC
Confidence 4689999999999999998874 3333 6899999988887 999999999999998989
Q ss_pred ChhHHHHHHHHHHHH
Q 020776 304 DVNSLADGIIKEIKQ 318 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~ 318 (321)
+.+++.+.|.+++++
T Consensus 139 ~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 139 SELLLGAEIATLLGE 153 (158)
T ss_dssp CHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999888864
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=190.14 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=120.9
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC--
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP-- 228 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp-- 228 (321)
.....|..+| +|+++|.+|+.+++++++||+|||+||++||++ |+.++|.|++++++|+++ ++.+|+|++|+
T Consensus 10 ~~~~~~~~~p--~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~-C~~~~p~l~~l~~~~~~~---~~~vi~is~d~~~ 83 (180)
T 3kij_A 10 FLKPKINSFY--AFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQL-TDRNYLGLKELHKEFGPS---HFSVLAFPCNQFG 83 (180)
T ss_dssp CCCCCCCCGG--GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHTTT---SEEEEEEECCCST
T ss_pred hhcCCcCccc--ceEEecCCCCEecHHHcCCCEEEEEEEecCCCC-cHHHHHHHHHHHHHhccC---CeEEEEEECCccc
Confidence 4456777888 999999999999999999999999999999997 999999999999999876 68899999886
Q ss_pred --CCCCHHHHHHHHHH-hCCCceeec-----CChH-HH-HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 229 --ERDTVEQVREYVKE-FHPKLIGLT-----GSPD-EI-RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 229 --~~Dt~e~l~~~~~~-~~~~~~~l~-----~~~d-~~-~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+.|+++.+++|+++ ++++|+.+. +... .. ..+....+ ..|+ |..++||||++|+|+++
T Consensus 84 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~p~----------~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 84 ESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK--KEPR----------WNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp TCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHT--CCCS----------STTCEEEECTTSCEEEE
T ss_pred cCCCCCHHHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCC--CCcc----------ccceEEEECCCCCEEEE
Confidence 35789999999999 999998753 1111 01 11111111 1221 22338999999999999
Q ss_pred eCCCCChhHHHHHHHHHHHHHh
Q 020776 299 FGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 299 ~~~~~~~~~l~~~l~~~L~~~k 320 (321)
+.+..+++++.+.|+++|+++.
T Consensus 152 ~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 152 WRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp ECTTCCGGGTHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999988887653
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=182.83 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=122.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
..+|+++| +|+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+++|++| ++
T Consensus 3 l~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~---~~~vv~v~~d---~~ 73 (152)
T 2lrn_A 3 LATGSVAP--AITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSW-CRKETPYLLKTYNAFKDK---GFTIYGVSTD---RR 73 (152)
T ss_dssp SCTTEECC--CCEEECSSSCEEESGGGTTSEEEEEEECTTCTT-HHHHHHHHHHHHHHHTTT---TEEEEEEECC---SC
T ss_pred ccCCCcCC--CceeEcCCCCEEeHHHcCCCEEEEEEECCCChh-HHHHHHHHHHHHHHhccC---CeEEEEEEcc---CC
Confidence 46788888 999999999999999999999999999999998 999999999999999865 6888999988 35
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+.+++|+++++++|+.+....+....+++.|++...|+ +||||++|+|++.+. +.+++.+.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~---~~~~l~~~l 136 (152)
T 2lrn_A 74 EEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPH--------------IILVDPEGKIVAKEL---RGDDLYNTV 136 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCE--------------EEEECTTSEEEEECC---CTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCe--------------EEEECCCCeEEEeeC---CHHHHHHHH
Confidence 789999999999999999654444788999999988887 999999999999863 456777777
Q ss_pred HHHHHHH
Q 020776 313 IKEIKQY 319 (321)
Q Consensus 313 ~~~L~~~ 319 (321)
++++++.
T Consensus 137 ~~l~~~~ 143 (152)
T 2lrn_A 137 EKFVNGA 143 (152)
T ss_dssp HHHHTSS
T ss_pred HHHHhhc
Confidence 7776543
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-26 Score=190.60 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=124.2
Q ss_pred CCCCCCCCCeEEEc-CCCCeeeccccCCCeEEEEEecCCCCCCcHHH-HHHHHHHHHHHhhhcCCcEEEEEEeeCCCC--
Q 020776 155 VGKAAIGGPFKLIN-HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDE-LQKLAAAVDKIKENSGIDIVPAFISVDPER-- 230 (321)
Q Consensus 155 vG~~aP~p~f~l~d-~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~e-lp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~-- 230 (321)
.|.++| +|++++ .+|+.+++++++||+|||+||++||++ |..+ +|.|++++++|+++ ++.+|+|++|++.
T Consensus 5 ~g~~~p--~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~-C~~e~~~~l~~l~~~~~~~---~v~~v~v~~~~~~~~ 78 (160)
T 3lor_A 5 DNAPLL--ELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPG-CVNHGVPQAQKIHRMIDES---QVQVIGLHSVFEHHD 78 (160)
T ss_dssp TTCCBC--CCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHH-HHHTHHHHHHHHHHHSCTT---TEEEEEEECCCSCGG
T ss_pred CCCcCC--CcccccccCCCccCHHHhCCCEEEEEEEcCCCcc-hhhhhhHHHHHHHHHhCcC---CcEEEEEeccccccc
Confidence 456666 999999 899999999999999999999999998 9995 99999999999865 6899999987542
Q ss_pred -CCHHHHHHHHHHhCCCceeecCChHHHHH------HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 231 -DTVEQVREYVKEFHPKLIGLTGSPDEIRN------IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 231 -Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~------~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
|+++.+++|+++++++|+.+. |.... +++.|++...|+ +||||++|+|++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~ 141 (160)
T 3lor_A 79 VMTPEALKVFIDEFGIKFPVAV---DMPREGQRIPSTMKKYRLEGTPS--------------IILADRKGRIRQVQFGQV 141 (160)
T ss_dssp GSCHHHHHHHHHHTTCCSCEEE---ECCCTTCSSCHHHHHTTCCSSSE--------------EEEECTTSBEEEEEESCC
T ss_pred cCCHHHHHHHHHHcCCCCcEEE---CCccccchhhhHHHhcccCccce--------------EEEECCCCcEEEEecCcC
Confidence 789999999999999999884 33333 899999988887 999999999999998999
Q ss_pred ChhHHHHHHHHHHHH
Q 020776 304 DVNSLADGIIKEIKQ 318 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~ 318 (321)
+.+++.+.|.++|++
T Consensus 142 ~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 142 DDFVLGLLLGSLLSE 156 (160)
T ss_dssp CHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988864
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=187.99 Aligned_cols=151 Identities=8% Similarity=0.153 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC---
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--- 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--- 228 (321)
...+|+++| +|+++|.+|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|.
T Consensus 4 ~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~~~---~~~vv~v~~d~~~~ 77 (169)
T 2v1m_A 4 SHKSWNSIY--EFTVKDINGVDVSLEKYRGHVCLIVNVACKCGA-TDKNYRQLQEMHTRLVGK---GLRILAFPCNQFGG 77 (169)
T ss_dssp ---CCCSGG--GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECCCSTT
T ss_pred cccCCcccc--cceeecCCCCCccHHHcCCCEEEEEEeeccCCc-hHHHHHHHHHHHHHhhcC---CeEEEEEECCccCC
Confidence 456888888 999999999999999999999999999999997 999999999999999876 68889999873
Q ss_pred -CCCCHHHHHHH-HHHhCCCceeecC-C--hHHHHHHHH-----HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 229 -ERDTVEQVREY-VKEFHPKLIGLTG-S--PDEIRNIAR-----AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 229 -~~Dt~e~l~~~-~~~~~~~~~~l~~-~--~d~~~~~a~-----~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+.++++.+++| .++++++|+.+.. + .+....+.+ .+++... .+.+.|.+||||++|+|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~---------~i~~~P~~~lid~~G~i~~~ 148 (169)
T 2v1m_A 78 QEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTN---------NIKWNFSKFLVDRQGQPVKR 148 (169)
T ss_dssp CCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSC---------SCCSTTCEEEECTTSCEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCC---------cccccceEEEECCCCCEEEE
Confidence 45789999999 5999999988741 1 110001111 1243221 13344569999999999999
Q ss_pred eCCCCChhHHHHHHHHHHH
Q 020776 299 FGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 299 ~~~~~~~~~l~~~l~~~L~ 317 (321)
+.+..+++++.+.|+++++
T Consensus 149 ~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 149 YSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp ECTTSCGGGGHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 9888889999999988876
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=185.84 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=107.8
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.....+|+++| +|++ +.+|+.+++++++||+|||+||++||++ |..++|.|++++++|+++ ++.+|+|++|+
T Consensus 4 ~~~l~~G~~~P--~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~---~~~vv~vs~d~- 75 (143)
T 4fo5_A 4 TEGVNPGDLAP--RIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAE-SRARNVQLANEVNKFGPD---KIAMCSISMDE- 75 (143)
T ss_dssp CBSSSTTSBCC--CCCC------CCCSCCSSCCEEEEEEECTTCHH-HHHHHHHHHHHHTTSCTT---TEEEEEEECCS-
T ss_pred ccccCCcccCC--ceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhCcC---CEEEEEEEccC-
Confidence 34678999999 9999 9999999999999999999999999998 999999999999999865 68999999985
Q ss_pred CCCHHHHHHHHHHhCCCc-eeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 230 RDTVEQVREYVKEFHPKL-IGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~-~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+.+.+++|+++++++| +.+....+....+++.|++...|+ +||||++|+|+++..
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 76 --KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFK--------------NFLINDEGVIIAANV 131 (143)
T ss_dssp --CHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGGGCCC--------------EEEECTTSBEEEESC
T ss_pred --CHHHHHHHHHHhCCCCceeeecccccchHHHHHcCCCCCCc--------------EEEECCCCEEEEccC
Confidence 3789999999999999 666544444568899999998887 999999999999753
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=196.80 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeecccc--CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDF--LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~--kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
..+||+++| +|+++|.+|++++|+++ +||++||+|| ++|||+ |..+++.|++++++|+++ ++.+|+||.
T Consensus 4 ml~vG~~aP--dF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~-C~~e~~~l~~~~~~~~~~---~v~vv~is~-- 75 (164)
T 4gqc_A 4 LVELGEKAP--DFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPV-CTKELCTFRDKMAQLEKA---NAEVLAISV-- 75 (164)
T ss_dssp CCCTTSBCC--CCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCE-ECSSCEESCCCGGGGGGS---SSEEEEEES--
T ss_pred cccCCCCCc--CcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCC-cccchhhhhhhHHHhhcc---CceEEEecC--
Confidence 468999999 99999999999999998 8999999988 999997 999999999999999876 577888886
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC-----CC
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK-----NN 303 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~-----~~ 303 (321)
|+++.+++|+++++++|+++ .|..++++++||+...+.. .......|++||||++|+|++.+.+ ..
T Consensus 76 --d~~~~~~~~~~~~~~~fp~l---~D~~~~v~~~ygv~~~~~~----~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~ 146 (164)
T 4gqc_A 76 --DSPWCLKKFKDENRLAFNLL---SDYNREVIKLYNVYHEDLK----GLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEP 146 (164)
T ss_dssp --SCHHHHHHHHHHTTCCSEEE---ECTTSHHHHHTTCEEEEET----TEEEEECCEEEEECTTSBEEEEEECSCTTCCC
T ss_pred --CCHHHHHHHHHhcCccccee---ecCchHHHHHcCCcccccc----cCcCCeeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 56899999999999999999 6777899999999764421 1122345779999999999987532 23
Q ss_pred ChhHHHHHHHHHHHHH
Q 020776 304 DVNSLADGIIKEIKQY 319 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~~ 319 (321)
+.+++.+.|+++..++
T Consensus 147 ~~~eil~~l~~l~~e~ 162 (164)
T 4gqc_A 147 DYDEVVREANKIAGEL 162 (164)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhccc
Confidence 5677777777776653
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=188.50 Aligned_cols=149 Identities=13% Similarity=0.175 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC---
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--- 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--- 228 (321)
...+|+++| +|+++|.+|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|+
T Consensus 5 ~~~~g~~~p--~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~-C~~~~~~l~~l~~~~~~~---~~~vv~vs~d~~~~ 78 (170)
T 2p5q_A 5 TSKNPESVH--DFTVKDAKENDVDLSIFKGKVLLIVNVASKCGM-TNSNYAEMNQLYEKYKDQ---GLEILAFPCNQFGE 78 (170)
T ss_dssp -----CCGG--GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECCTTTT
T ss_pred cCCCCcccc--ceEEEcCCCCEecHHHhCCCEEEEEEEeccCCc-cHHHHHHHHHHHHHhccC---CEEEEEEECCCCCC
Confidence 456788888 999999999999999999999999999999997 999999999999999876 68899999985
Q ss_pred -CCCCHHHHHHHHH-HhCCCceeecC-Ch--HHHHHHH-----HHcCc--eEeecCCCCCCcccccceEEEEEcCCCeEE
Q 020776 229 -ERDTVEQVREYVK-EFHPKLIGLTG-SP--DEIRNIA-----RAYRV--YYMKTAEEDSDYLVDHSIVMYLMSPKMEFV 296 (321)
Q Consensus 229 -~~Dt~e~l~~~~~-~~~~~~~~l~~-~~--d~~~~~a-----~~ygv--~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv 296 (321)
+.|+++.+++|++ +++++|+.+.. +. +....+. +.|++ ..+| |.+++||||++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p-----------~~~~~~lid~~G~i~ 147 (170)
T 2p5q_A 79 EEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQ-----------WNFAKFLVNKDGQVV 147 (170)
T ss_dssp CCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCC-----------STTCEEEECTTSCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCccc-----------ccccEEEECCCCCEE
Confidence 4578999999999 78999988731 11 0001111 12344 3334 222499999999999
Q ss_pred EEeCCCCChhHHHHHHHHHHH
Q 020776 297 KFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 297 ~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.+..+++++.+.|+++++
T Consensus 148 ~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 148 DRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp EEECTTSCGGGGHHHHHHHTT
T ss_pred EeeCCCCCHHHHHHHHHHHhh
Confidence 999888888888888888775
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=183.02 Aligned_cols=134 Identities=17% Similarity=0.270 Sum_probs=113.2
Q ss_pred CCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHH---HHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 154 SVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAA---AVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~---l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
.+|+++| +|++++.+|+.+++++++||++||+||++||++ |..++|.|.+ ++++|+++ ++.+|+|++|
T Consensus 2 ~~G~~~p--~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~~~~l~~~~~~~---~~~~v~v~~d--- 72 (142)
T 3ewl_A 2 NAGMKAA--DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSN-CRKFEKLFAEIPAFVEMVENG---TLRVLAIYPD--- 72 (142)
T ss_dssp CTTSBCC--CCEEECTTCCEEEGGGCCCSEEEEEECCSSCHH-HHHHHHHHHTCHHHHHHHHHT---SEEEEEEECS---
T ss_pred CCCCcCC--CCEEECCCCCEEEhhhcCCCEEEEEEECCCCcc-HHHHHHHHHHhHHHHHHhccC---CeEEEEEEec---
Confidence 5788998 999999999999999999999999999999998 9999999999 99999876 6889999987
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHH--HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIAR--AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~--~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
++.+.+++|+++++++|+.+. |....+.. .|++...|+ +||||++|+|++ +..+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~---~~~~~~~l 132 (142)
T 3ewl_A 73 ENREEWATKAVYMPQGWIVGW---NKAGDIRTRQLYDIRATPT--------------IYLLDGRKRVIL---KDTSMEQL 132 (142)
T ss_dssp SCHHHHHHHHTTSCTTCEEEE---CTTCHHHHTTCSCCCSSSE--------------EEEECTTCBEEE---CSCCHHHH
T ss_pred CCHHHHHHHHHHcCCCcceee---CCccchhhHHHcCCCCCCe--------------EEEECCCCCEEe---cCCCHHHH
Confidence 467899999999999999984 44445554 888887776 999999999988 34666666
Q ss_pred HHHHHHHH
Q 020776 309 ADGIIKEI 316 (321)
Q Consensus 309 ~~~l~~~L 316 (321)
.+.|.+..
T Consensus 133 ~~~l~~~~ 140 (142)
T 3ewl_A 133 IDYLATQA 140 (142)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHc
Confidence 66555443
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=183.31 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=123.3
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+|+++| +|+++|.+|+.+++++++||++||+||++||++ |..+++.|++++++++++ ++.++.|++|. +++
T Consensus 2 ~G~~~p--~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~-C~~~~~~l~~~~~~~~~~---~v~vv~v~~d~---~~~ 72 (151)
T 2f9s_A 2 EGSDAP--NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ---GVEIVAVNVGE---SKI 72 (151)
T ss_dssp CCEECC--CCEEECTTCCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG---TEEEEEEEESC---CHH
T ss_pred CCCcCC--cceeEcCCCCEEEHHHcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhccC---CeEEEEEECCC---CHH
Confidence 678888 999999999999999999999999999999997 999999999999999875 68889999874 468
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
.+++|+++++++|+.+ .|....+++.|++...|+ +||||++|++++.+.|..+.+++.+.|.+
T Consensus 73 ~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~G~~~~~~l~~~l~~ 135 (151)
T 2f9s_A 73 AVHNFMKSYGVNFPVV---LDTDRQVLDAYDVSPLPT--------------TFLINPEGKVVKVVTGTMTESMIHDYMNL 135 (151)
T ss_dssp HHHHHHHHHTCCSCEE---EETTSHHHHHTTCCSSCE--------------EEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCceEE---ECCchHHHHhcCCCCCCe--------------EEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999999988 555677899999988776 99999999999998888888888888887
Q ss_pred HHHH
Q 020776 315 EIKQ 318 (321)
Q Consensus 315 ~L~~ 318 (321)
+++.
T Consensus 136 ll~~ 139 (151)
T 2f9s_A 136 IKPG 139 (151)
T ss_dssp HSCC
T ss_pred HHhh
Confidence 7653
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=190.90 Aligned_cols=153 Identities=12% Similarity=0.149 Sum_probs=113.4
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC-
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP- 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp- 228 (321)
.....+|+++| +|+++|.+|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|.
T Consensus 20 ~~~~~~g~~~p--~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~-C~~~~p~l~~l~~~~~~~---~v~vv~vs~d~~ 93 (181)
T 2p31_A 20 FQSMQQEQDFY--DFKAVNIRGKLVSLEKYRGSVSLVVNVASECGF-TDQHYRALQQLQRDLGPH---HFNVLAFPCNQF 93 (181)
T ss_dssp -------CCGG--GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECCCS
T ss_pred cCcCCcCCccC--ceEeecCCCCEecHHHcCCCEEEEEEeccCCCC-cHHHHHHHHHHHHHhhcC---CEEEEEEECcCC
Confidence 34577889998 999999999999999999999999999999997 999999999999999876 68889999873
Q ss_pred ---CCCCHHHHHHHHHH-hCCCceeecC-Ch--HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 229 ---ERDTVEQVREYVKE-FHPKLIGLTG-SP--DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 229 ---~~Dt~e~l~~~~~~-~~~~~~~l~~-~~--d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.|+++.+++|+++ ++++|+.+.. +. .....+ -.|++...|. .+.+..++||||++|+|++++.+
T Consensus 94 ~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~-~~~~~~~~P~-------~~~~~~~~~lid~~G~i~~~~~g 165 (181)
T 2p31_A 94 GQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPA-FKYLAQTSGK-------EPTWNFWKYLVAPDGKVVGAWDP 165 (181)
T ss_dssp TTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHH-HHHHHHHHSC-------CCCSTTCEEEECTTSCEEEEECT
T ss_pred CCCCCCCHHHHHHHHHhhcCCCceeEeecccCCccchhh-hhhhhhcCCC-------ccccceeEEEEcCCCCEEEEeCC
Confidence 44689999999999 9999988731 10 000001 1233434440 01111149999999999999988
Q ss_pred CCChhHHHHHHHHHH
Q 020776 302 NNDVNSLADGIIKEI 316 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L 316 (321)
..+++++.+.|+++|
T Consensus 166 ~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 166 TVSVEEVRPQITALV 180 (181)
T ss_dssp TSCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHh
Confidence 888877777766554
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=178.66 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=122.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeecc--ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHH-hhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEK--DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI-KENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLs--d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~-~~~~g~~v~vV~IS~Dp 228 (321)
...+|+++| +|++++.+|+.++++ +++||++||+||++||++ |..++|.|.+++++| .++ ++.+++|++|.
T Consensus 4 ~~~~g~~~p--~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~-C~~~~~~l~~l~~~~~~~~---~~~~v~v~~d~ 77 (148)
T 3fkf_A 4 KVTVGKSAP--YFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDP-QPEANAELKRLNKEYKKNK---NFAMLGISLDI 77 (148)
T ss_dssp -CCTTSBCC--CCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCC-CHHHHHHHHHHHHHTTTCT---TEEEEEEECCS
T ss_pred cccCCCcCC--CeEeeCCCCCEEeccccccCCcEEEEEEECCCCHH-HHHHhHHHHHHHHHhcCCC---CeEEEEEECCC
Confidence 467899998 999999999999999 999999999999999998 999999999999999 654 68899999885
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
+.+.+++|+++++++|+.+....+....+++.|++...|+ +||||++|+|++.+. +.+++
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~---~~~~l 137 (148)
T 3fkf_A 78 ---DREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPT--------------NILLSPTGKILARDI---QGEAL 137 (148)
T ss_dssp ---CHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSE--------------EEEECTTSBEEEESC---CHHHH
T ss_pred ---CHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCE--------------EEEECCCCeEEEecC---CHHHH
Confidence 3689999999999999999655444678899999998887 999999999999875 77778
Q ss_pred HHHHHHHHHH
Q 020776 309 ADGIIKEIKQ 318 (321)
Q Consensus 309 ~~~l~~~L~~ 318 (321)
.+.|.+++++
T Consensus 138 ~~~l~~ll~~ 147 (148)
T 3fkf_A 138 TGKLKELLKT 147 (148)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHcc
Confidence 8878777653
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-25 Score=182.06 Aligned_cols=142 Identities=26% Similarity=0.394 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
+.+|+++| +|+++|.+|+.+++++++||++||+||++||++ |..+++.|++++++++++ ++.+++|++| .|+
T Consensus 2 ~~~G~~~p--~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~l~~~~~~~---~~~vv~v~~~--~~~ 73 (153)
T 2l5o_A 2 SLDSKTAP--AFSLPDLHGKTVSNADLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDYKNK---NFQVLAVAQP--IDP 73 (153)
T ss_dssp --CCTTCC--SCEEECTTSCEEEHHHHTTCEEEEEEECTTCTT-HHHHHHHHHHHHHHGGGT---TEEEEEEECT--TSC
T ss_pred CCCCCCCC--CcEeecCCCCCccHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHhccC---CeEEEEEecC--CCC
Confidence 35788888 999999999999999999999999999999998 999999999999999865 6888889887 477
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+.+++|+++++++|+.+ .|....+++.|++...|+ +||||++|+|+..+.+..+.+++.+.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~i~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~~~l 136 (153)
T 2l5o_A 74 IESVRQYVKDYGLPFTVM---YDADKAVGQAFGTQVYPT--------------SVLIGKKGEILKTYVGEPDFGKLYQEI 136 (153)
T ss_dssp HHHHHHHHHHTTCCSEEE---ECSSCHHHHHHTCCSSSE--------------EEEECSSSCCCEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceEE---cCchHHHHHHcCCCccCe--------------EEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence 899999999999999888 445567899999988887 999999999999988889999999999
Q ss_pred HHHHHHH
Q 020776 313 IKEIKQY 319 (321)
Q Consensus 313 ~~~L~~~ 319 (321)
.+++++.
T Consensus 137 ~~ll~~~ 143 (153)
T 2l5o_A 137 DTAWRNS 143 (153)
T ss_dssp HHHHHCC
T ss_pred HHHHHhh
Confidence 9988754
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=181.46 Aligned_cols=143 Identities=16% Similarity=0.239 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|+++| +|++++.+|+.+++++++||++||+||++||++ |..+++.|++++++|+++ ++.+|+|++|
T Consensus 6 ~~~~~g~~~p--~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~l~~~~~~~---~v~~v~v~~d--- 76 (165)
T 3or5_A 6 QADARPTPAP--SFSGVTVDGKPFSSASLKGKAYIVNFFATWCPP-CRSEIPDMVQVQKTWASR---GFTFVGIAVN--- 76 (165)
T ss_dssp -CCCCCCBCC--CCEEECTTSCEEEGGGGTTCEEEEEEECTTSHH-HHHHHHHHHHHHHHHTTT---TEEEEEEECS---
T ss_pred hhhcCCCCCC--CceeeCCCCCEechhHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhccC---CeEEEEEECC---
Confidence 3567888888 999999999999999999999999999999998 999999999999999865 6888999987
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHc------CceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAY------RVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~y------gv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
++.+.+++|+++++++|+.+.... .+.+.| ++...|+ +||||++|+|++.+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~P~--------------~~lid~~G~i~~~~~g~~~ 138 (165)
T 3or5_A 77 EQLPNVKNYMKTQGIIYPVMMATP----ELIRAFNGYIDGGITGIPT--------------SFVIDASGNVSGVIVGPRS 138 (165)
T ss_dssp CCHHHHHHHHHHHTCCSCEEECCH----HHHHHHHTTSTTCSCSSSE--------------EEEECTTSBEEEEECSCCC
T ss_pred CCHHHHHHHHHHcCCCCceEecCH----HHHHHHhhhhccCCCCCCe--------------EEEECCCCcEEEEEcCCCC
Confidence 457899999999999999885432 567777 5555554 9999999999999989899
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.+++.+.|++++++.+
T Consensus 139 ~~~l~~~l~~~l~~~~ 154 (165)
T 3or5_A 139 KADFDRIVKMALGAKA 154 (165)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999999987653
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=191.13 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=119.4
Q ss_pred CCCCCCCCCCeEEEcCC-CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----C
Q 020776 154 SVGKAAIGGPFKLINHD-GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----P 228 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~-G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p 228 (321)
..++++| +|+++|.+ |+.+++++++||+|||+||++|||+ |+.++|.|++++++|+++ ++.+|+|++| +
T Consensus 21 ~~~~~~p--~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~-C~~e~p~l~~l~~~~~~~---g~~vv~v~~d~~~~~ 94 (208)
T 2f8a_A 21 QSMQSVY--AFSARPLAGGEPVSLGSLRGKVLLIENVASLGGT-TVRDYTQMNELQRRLGPR---GLVVLGFPCNQFGHQ 94 (208)
T ss_dssp -CCCCGG--GCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECCCSTTT
T ss_pred hhcCccC--ceEeeeCCCCCCccHHHcCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHccCC---CeEEEEEECCccccc
Confidence 3445666 99999999 9999999999999999999999998 999999999999999876 6889999997 5
Q ss_pred CCCCHHHHHHHHH------HhCCCceeecC-----ChH-HHHHH-HHHcCce--------EeecCCCCC---Ccccccce
Q 020776 229 ERDTVEQVREYVK------EFHPKLIGLTG-----SPD-EIRNI-ARAYRVY--------YMKTAEEDS---DYLVDHSI 284 (321)
Q Consensus 229 ~~Dt~e~l~~~~~------~~~~~~~~l~~-----~~d-~~~~~-a~~ygv~--------~~p~~~~~~---~y~v~~~~ 284 (321)
+.|+++.+++|++ +++++|+++.. ... ..-.+ ...+... ..+....-. ...+.+.|
T Consensus 95 e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p 174 (208)
T 2f8a_A 95 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNF 174 (208)
T ss_dssp TCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTT
T ss_pred CCCCHHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCc
Confidence 6678999999998 88899987731 111 11111 1122210 000000000 11356678
Q ss_pred EEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 285 VMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 285 ~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++||||++|+|++++.+..+++++.+.|+++|+
T Consensus 175 ~tflID~~G~i~~~~~g~~~~~~l~~~I~~ll~ 207 (208)
T 2f8a_A 175 EKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 207 (208)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHHC
T ss_pred eEEEEcCCCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 899999999999999888899999888888875
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=181.32 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=121.3
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|+++| +|++++.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+++|++|.
T Consensus 3 ~~~~~G~~~p--~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~-C~~~~~~l~~l~~~~~~~---~~~~v~v~~d~-- 74 (148)
T 3hcz_A 3 APLLLGKKAP--NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGH-CQQETPKLYDWWLKNRAK---GIQVYAANIER-- 74 (148)
T ss_dssp CCCCTTSBCC--CCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCT-TCSHHHHHHHHHHHHGGG---TEEEEEEECCS--
T ss_pred CccCCCCcCC--ceEEecCCCCEEEhHHcCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHhccC---CEEEEEEEecC--
Confidence 3567899999 999999999999999999999999999999998 999999999999999876 68889999873
Q ss_pred CCHHHHHHHHHHhCCC-ceeecCChHHHHH--HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 231 DTVEQVREYVKEFHPK-LIGLTGSPDEIRN--IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~-~~~l~~~~d~~~~--~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+.+.+++|+++++++ |+.+. |.... +++.|++...|+ ++|||++|+|++.+.+..+.++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~i~~~P~--------------~~lid~~G~i~~~~~g~~~~~~ 136 (148)
T 3hcz_A 75 -KDEEWLKFIRSKKIGGWLNVR---DSKNHTDFKITYDIYATPV--------------LYVLDKNKVIIAKRIGYENLDD 136 (148)
T ss_dssp -SSHHHHHHHHHHTCTTSEEEE---CTTCCCCHHHHHCCCSSCE--------------EEEECTTCBEEEESCCGGGHHH
T ss_pred -CHHHHHHHHHHcCCCCceEEe---ccccchhHHHhcCcCCCCE--------------EEEECCCCcEEEecCCHHHHHH
Confidence 457999999999998 88883 44444 889999988887 9999999999999877666666
Q ss_pred HHHHHHHHHH
Q 020776 308 LADGIIKEIK 317 (321)
Q Consensus 308 l~~~l~~~L~ 317 (321)
+.+.+.++++
T Consensus 137 ~l~~l~~~l~ 146 (148)
T 3hcz_A 137 FLVQYEKSLK 146 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666554
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=190.20 Aligned_cols=145 Identities=22% Similarity=0.269 Sum_probs=128.5
Q ss_pred CCCCCCCCCCCCCeEEE-cCCCCeeeccccCCCe-EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 151 QGPSVGKAAIGGPFKLI-NHDGKNVTEKDFLGKW-TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~-d~~G~~vsLsd~kGK~-vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
....+|+++| +|+++ +.+|+.+++++++||+ +||+||++||++ |..+++.|++++++|+++ ++.+|+|++|+
T Consensus 16 ~~~~~g~~~p--~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~---~v~vv~v~~d~ 89 (196)
T 2ywi_A 16 NMFPLGKQAP--PFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPF-VKHVQHELVRLANDYMPK---GVSFVAINSND 89 (196)
T ss_dssp CCCCTTCBCC--CCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHH-HHHHHHHHHHHHHHHGGG---TCEEEEEECSC
T ss_pred cCCCcCCcCC--ceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCcc-HHHHHHHHHHHHHHHHhC---CcEEEEEECCc
Confidence 4578899988 99999 9999999999999985 999999999997 999999999999999876 58889999987
Q ss_pred CC----CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE------
Q 020776 229 ER----DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF------ 298 (321)
Q Consensus 229 ~~----Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~------ 298 (321)
.. |+++.+++|+++++++|+++ .|....+++.|++...|+ +||||++|+|+++
T Consensus 90 ~~~~~~d~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~~~~~ 152 (196)
T 2ywi_A 90 AEQYPEDSPENMKKVAEELGYPFPYL---YDETQEVAKAYDAACTPD--------------FYIFDRDLKCVYRGQLDDS 152 (196)
T ss_dssp TTTCGGGSHHHHHHHHHHHTCCSCEE---ECSSCHHHHHHTCCEESE--------------EEEEETTCBEEEEECSSSC
T ss_pred cccccccCHHHHHHHHHHcCCCceEE---ECCchHHHHHhCCCCCCe--------------EEEEcCCCeEEEccccCcc
Confidence 54 78999999999999999988 455667899999999887 9999999999998
Q ss_pred ---eCCCCChhHHHHHHHHHHHH
Q 020776 299 ---FGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 299 ---~~~~~~~~~l~~~l~~~L~~ 318 (321)
+.+..+.+++.+.|++++++
T Consensus 153 ~~~~~g~~~~~~l~~~i~~ll~~ 175 (196)
T 2ywi_A 153 RPNNGIPVTGESIRAALDALLEG 175 (196)
T ss_dssp CTTTCCCCCCHHHHHHHHHHHHT
T ss_pred cccccCccCHHHHHHHHHHHHcC
Confidence 44666888898888888764
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=191.71 Aligned_cols=154 Identities=14% Similarity=0.216 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD---- 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D---- 227 (321)
....|+++| +|+++|.+|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|
T Consensus 21 ~~~~~~~~p--~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~-C~~~~~~l~~l~~~~~~~---~v~vv~vs~d~~~~ 94 (190)
T 2vup_A 21 HMSAASSIF--DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGY-TKGGYETATTLYNKYKSQ---GFTVLAFPCNQFGG 94 (190)
T ss_dssp ---CCCSGG--GSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TCEEEEEECCCSTT
T ss_pred cCCCCCccc--CeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCc-cHHHHHHHHHHHHHHhcC---CeEEEEEEcCccCC
Confidence 456677787 999999999999999999999999999999997 999999999999999876 5888999998
Q ss_pred CCCCCHHHHHHHH-HHhCCCceeecC-Ch--HH---HHH-H-HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 228 PERDTVEQVREYV-KEFHPKLIGLTG-SP--DE---IRN-I-ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 228 p~~Dt~e~l~~~~-~~~~~~~~~l~~-~~--d~---~~~-~-a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
++.|+++.+++|+ ++++++|+.+.. +. .. ... + .+.|++...|. +.|.+++||||++|+|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~--------i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 95 QEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKA--------IKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp CCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCS--------CCSTTCEEEECTTSCEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCcc--------ccccceEEEECCCCcEEEE
Confidence 5667899999999 899999988742 10 10 111 1 13367766661 2334459999999999999
Q ss_pred eCCCCChhHHHHHHHHHHHHH
Q 020776 299 FGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 299 ~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+.+..+++++.+.|+++|++-
T Consensus 167 ~~g~~~~~~l~~~i~~ll~~~ 187 (190)
T 2vup_A 167 FSPGASVKDIEKKLIPLLEST 187 (190)
T ss_dssp ECTTCCHHHHHHHHHHHHHCC
T ss_pred ECCCCCHHHHHHHHHHHHhhc
Confidence 988889999999999988753
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-25 Score=194.62 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=125.9
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCe-EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKW-TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~-vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.....+|+++| +|+++|.+|+++++++++||+ |||+||++||++ |..++|.|++++++|+++ ++.+|+|++|+
T Consensus 29 ~~~l~~G~~aP--~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~---~v~vv~Vs~d~ 102 (218)
T 3u5r_E 29 SNSITLGTRAA--DFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPF-VVLIREALAKFAGDYAGQ---GLAVVAINSND 102 (218)
T ss_dssp CCCCCTTCBCC--CCCEECTTCCEECGGGGTTCSEEEEEECCSSCHH-HHTTHHHHHHHHHHHTTT---TEEEEEEECSC
T ss_pred CCcCCCCCcCC--CcEeECCCCCEEeHHHhCCCCeEEEEEECCCCcc-HHHHHHHHHHHHHHHHhC---CcEEEEEECCc
Confidence 35688999999 999999999999999999995 999999999997 999999999999999866 68899999974
Q ss_pred CC----CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC----
Q 020776 229 ER----DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG---- 300 (321)
Q Consensus 229 ~~----Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~---- 300 (321)
.. |+++.+++|+++++++|+++ .|....+++.|++..+|+ +||||++|+|+++..
T Consensus 103 ~~~~~~d~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~v~~~P~--------------~~liD~~G~i~~~g~~d~~ 165 (218)
T 3u5r_E 103 AQAFPEETLERVGAEVKAYGYGFPYL---KDASQSVAKAYGAACTPD--------------FFLYDRERRLVYHGQFDDA 165 (218)
T ss_dssp TTTCGGGSHHHHHHHHHHHTCCSCEE---ECTTCHHHHHHTCCEESE--------------EEEECTTCBEEEEECSSSC
T ss_pred ccccccCCHHHHHHHHHHhCCCccEE---ECCccHHHHHcCCCCCCe--------------EEEECCCCcEEEecccccc
Confidence 32 78999999999999999998 566678899999999887 999999999998742
Q ss_pred -----CCCChhHHHHHHHHHHH
Q 020776 301 -----KNNDVNSLADGIIKEIK 317 (321)
Q Consensus 301 -----~~~~~~~l~~~l~~~L~ 317 (321)
+..+.+++.+.|+++++
T Consensus 166 ~~~~~~~~~~~~l~~~i~~ll~ 187 (218)
T 3u5r_E 166 RPGNGKDVTGADLRAAVDAVLK 187 (218)
T ss_dssp CTTSCCCCCCHHHHHHHHHHHT
T ss_pred ccccccccCHHHHHHHHHHHHc
Confidence 13346777777777764
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=178.71 Aligned_cols=139 Identities=15% Similarity=0.243 Sum_probs=120.8
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.....+|+++| +|++++.+|+.+++++ +||++||+||++||++ |..+++.|++++++++++ ++.++.|++|..
T Consensus 6 ~~~~~~g~~~p--~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~~~~v~v~~d~~ 78 (145)
T 3erw_A 6 QAEEKQPAVPA--VFLMKTIEGEDISIPN-KGQKTILHFWTSWCPP-CKKELPQFQSFYDAHPSD---SVKLVTVNLVNS 78 (145)
T ss_dssp ------CCSCC--EEEEECTTSCEEEESC-TTSEEEEEEECSSCHH-HHHHHHHHHHHHHHCCCS---SEEEEEEECGGG
T ss_pred cccccCCCcCC--CceeecCCCCEEeHHH-CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcCCC---CEEEEEEEccCC
Confidence 34567888888 9999999999999999 9999999999999998 999999999999999754 689999999987
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
.++++.+++|+++++++|+.+ .|....+++.|++...|+ ++|||++|+|++.+.+..+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~ 141 (145)
T 3erw_A 79 EQNQQVVEDFIKANKLTFPIV---LDSKGELMKEYHIITIPT--------------SFLLNEKGEIEKTKIGPMTAEQLK 141 (145)
T ss_dssp SSCHHHHHHHHHHTTCCSCEE---ECSSSHHHHHTTCCEESE--------------EEEECTTCCEEEEEESCCCHHHHH
T ss_pred cCCHHHHHHHHHHcCCceeEE---EcCchhHHHhcCcCccCe--------------EEEEcCCCcEEEEEcCCcCHHHHH
Confidence 779999999999999999988 455667899999999987 999999999999988888887776
Q ss_pred HHH
Q 020776 310 DGI 312 (321)
Q Consensus 310 ~~l 312 (321)
+.|
T Consensus 142 ~~l 144 (145)
T 3erw_A 142 EWT 144 (145)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=186.65 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=125.7
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCC--CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDG--KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G--~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
......+|+++| +|++++.+| +.+++++++||++||+||++||++ |..++|.|++++++ ++.+|+|++
T Consensus 26 ~~~~~~~G~~~P--~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~-------~v~vv~vs~ 95 (176)
T 3kh7_A 26 ELPSALIGKPFP--AFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPS-CRVEHPELTRLAEQ-------GVVIYGINY 95 (176)
T ss_dssp GSTTTTTTSBCC--CCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHH-HHHHHHHHHHHHHT-------TCEEEEEEE
T ss_pred cccccccCCcCC--CcEecccCCCCceecHHHhCCCEEEEEEECCcCHH-HHHHHHHHHHHHHC-------CCEEEEEeC
Confidence 345678999999 999999999 899999999999999999999998 99999999998764 377788888
Q ss_pred CCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
| |+++.+++|+++++++|+.+. .|....+++.|++...|+ +||||++|+|++.+.+..+.+
T Consensus 96 ~---d~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~ 156 (176)
T 3kh7_A 96 K---DDNAAAIKWLNELHNPYLLSI--SDADGTLGLDLGVYGAPE--------------TYLIDKQGIIRHKIVGVVDQK 156 (176)
T ss_dssp S---CCHHHHHHHHHHTTCCCSEEE--EETTCHHHHHHTCCSSCE--------------EEEECTTCBEEEEEESCCCHH
T ss_pred C---CCHHHHHHHHHHcCCCCceEE--ECCcchHHHHcCCCCCCe--------------EEEECCCCeEEEEEcCCCCHH
Confidence 6 678999999999999987532 455668899999988886 999999999999998989999
Q ss_pred HHHHHHHHHHHHHh
Q 020776 307 SLADGIIKEIKQYK 320 (321)
Q Consensus 307 ~l~~~l~~~L~~~k 320 (321)
++.+.|.+++++++
T Consensus 157 ~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 157 VWREQLAPLYQQLL 170 (176)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998775
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-25 Score=188.85 Aligned_cols=152 Identities=12% Similarity=0.169 Sum_probs=118.3
Q ss_pred hccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 148 AVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 148 ~~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.......+|+++| +|+++|.+|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|
T Consensus 16 ~~~~~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~-C~~~~~~l~~l~~~~~~~---~v~vv~vs~d 89 (183)
T 2obi_A 16 ASRDDWRCARSMH--EFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGK-TEVNYTQLVDLHARYAEC---GLRILAFPCN 89 (183)
T ss_dssp ---CCGGGCCSGG--GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECC
T ss_pred hcccCCcccCccc--ceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCC-cHHHHHHHHHHHHHHhcC---CeEEEEEECC
Confidence 3445678899999 999999999999999999999999999999997 999999999999999876 6889999987
Q ss_pred ----CCCCCHHHHHHHHHHhCCCceeecC-C--hHHHHHHHHHc-------CceEeecCCCCCCcccccceEEEEEcCCC
Q 020776 228 ----PERDTVEQVREYVKEFHPKLIGLTG-S--PDEIRNIARAY-------RVYYMKTAEEDSDYLVDHSIVMYLMSPKM 293 (321)
Q Consensus 228 ----p~~Dt~e~l~~~~~~~~~~~~~l~~-~--~d~~~~~a~~y-------gv~~~p~~~~~~~y~v~~~~~~~LID~dG 293 (321)
++.|+++.+++|+++++++|+.+.. + .+....+.+.+ ++.. +.+.+.|++||||++|
T Consensus 90 ~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~---------~~i~~~P~~~lid~~G 160 (183)
T 2obi_A 90 QFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG---------NAIKWNFTKFLIDKNG 160 (183)
T ss_dssp CSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSS---------SSCCSTTCEEEECTTS
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccCCCCCccc---------ccccccceEEEECCCC
Confidence 3457899999999999999998741 1 11111122222 2211 1244556799999999
Q ss_pred eEEEEeCCCCChhHHHHHHHH
Q 020776 294 EFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 294 ~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+|++++.+..+++++.+.|++
T Consensus 161 ~i~~~~~g~~~~~~l~~~i~~ 181 (183)
T 2obi_A 161 CVVKRYGPMEEPLVIEKDLPH 181 (183)
T ss_dssp CEEEEECTTSCTHHHHTTSGG
T ss_pred CEEEEeCCCCCHHHHHHHHHH
Confidence 999999888887776665544
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-25 Score=190.32 Aligned_cols=157 Identities=10% Similarity=0.114 Sum_probs=119.2
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC---
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--- 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--- 228 (321)
...+|+++| +|+++|.+|+++++++++||++||+||++|||+ |..++|.|++++++|+++ ++.+|+|++|.
T Consensus 22 ~~~~g~~~p--~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~-C~~~~~~l~~l~~~~~~~---~v~vv~is~d~~~~ 95 (185)
T 2gs3_A 22 SMRCARSMH--EFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGK-TEVNYTQLVDLHARYAEC---GLRILAFPCNQFGK 95 (185)
T ss_dssp GGGGCCCGG--GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECCTTTT
T ss_pred hccCCCCcC--CceeEcCCCCEeeHHHcCCCEEEEEEecCCCCc-hHHHHHHHHHHHHHhhcC---CeEEEEEECcccCC
Confidence 356788888 999999999999999999999999999999997 999999999999999876 68899999984
Q ss_pred -CCCCHHHHHHHHHHhCCCceeecC-C--hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 229 -ERDTVEQVREYVKEFHPKLIGLTG-S--PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 229 -~~Dt~e~l~~~~~~~~~~~~~l~~-~--~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
+.++++.+++|+++++++|+.+.. + .+....+.+.+....... +-....+.+.|++||||++|+|++++.+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~--g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~ 173 (185)
T 2gs3_A 96 QEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK--GILGNAIKWNFTKFLIDKNGCVVKRYGPMEE 173 (185)
T ss_dssp CCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGC--CSSSSSCCSSCCEEEECTTSCEEEEECTTSC
T ss_pred CCCCCHHHHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhcccc--cccCCcccccceEEEECCCCCEEEeeCCCCC
Confidence 457899999999999999988741 1 111111222221100000 0000123455679999999999999988888
Q ss_pred hhHHHHHHHHHH
Q 020776 305 VNSLADGIIKEI 316 (321)
Q Consensus 305 ~~~l~~~l~~~L 316 (321)
++++.+.|+++|
T Consensus 174 ~~~l~~~i~~lL 185 (185)
T 2gs3_A 174 PLVIEKDLPHYF 185 (185)
T ss_dssp GGGGGGGHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 888887777653
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=194.16 Aligned_cols=150 Identities=14% Similarity=0.209 Sum_probs=115.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD---- 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D---- 227 (321)
....+.++| +|+++|.+|+++++++++||+|||+||++||++ |..++|.|++++++|+++ ++.+|+|++|
T Consensus 19 ~~~~~~~~p--~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~-C~~~~p~l~~l~~~~~~~---~~~vi~is~d~~~~ 92 (187)
T 3dwv_A 19 KMSAASSIF--DFEVLDADHKPYNLVQHKGSPLLIYNVASKCGY-TKGGYETATTLYNKYKSQ---GFTVLAFPSNQFGG 92 (187)
T ss_dssp -CTTCCSGG--GSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSC-CTTHHHHHHHHHHHHGGG---TCEEEEEEBCCCSS
T ss_pred hhcCCCccC--CeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCC-cHHHHHHHHHHHHHhhhC---CeEEEEEECcccCC
Confidence 344455666 999999999999999999999999999999998 999999999999999877 5888899988
Q ss_pred CCCCCHHHHHHHHH-HhCCCceeecC-C--hHH---H-HHHH----HHcCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 228 PERDTVEQVREYVK-EFHPKLIGLTG-S--PDE---I-RNIA----RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 228 p~~Dt~e~l~~~~~-~~~~~~~~l~~-~--~d~---~-~~~a----~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
++.++.+.+++|++ +++++|+.+.. + .+. . ..+. ..|++..+| +.+++||||++|+|
T Consensus 93 ~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP-----------~~~~~~liD~~G~i 161 (187)
T 3dwv_A 93 QEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIK-----------WNFTSFLIDRDGVP 161 (187)
T ss_dssp CSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCC-----------STTCEEEECTTSCE
T ss_pred CCCCCHHHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccc-----------cceeEEEECCCCCE
Confidence 55678899999999 45999988731 0 010 1 1111 112332233 11159999999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHHH
Q 020776 296 VKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 296 v~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++++.+..+++++.+.|+++|+.
T Consensus 162 ~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 162 VERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp EEEECTTCCHHHHHHHHHHHC--
T ss_pred EEEECCCCCHHHHHHHHHHHHhc
Confidence 99998989999999999888763
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=187.16 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|+++| +|+++|.+|+.+++++++||++||+||++||++ |..+++.|++++++|+++ +.+|+|++|+..
T Consensus 5 ~~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~----~~~v~v~~d~~~ 77 (188)
T 2cvb_A 5 PELPLESPLI--DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPY-VKGSIGELVALAERYRGK----VAFVGINANDYE 77 (188)
T ss_dssp CCCCTTCBCC--CCEEECTTSCEEEGGGCCSSEEEEEEECSSCHH-HHTTHHHHHHHHHHTTTT----EEEEEEECCCTT
T ss_pred CcCCCCCCCC--CceeecCCCCEEeHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHhhcC----eEEEEEEcCccc
Confidence 4577899988 999999999999999999999999999999998 999999999999999742 889999998754
Q ss_pred ----CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-------
Q 020776 231 ----DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF------- 299 (321)
Q Consensus 231 ----Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~------- 299 (321)
|+.+.+++|+++++++|+++ .|....+++.|++...|+ +||||++|+|+++.
T Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~g~~~~~~~ 140 (188)
T 2cvb_A 78 KYPEDAPEKMAAFAEEHGIFFPYL---LDETQEVAKAYRALRTPE--------------VFLFDERRLLRYHGRVNDNPK 140 (188)
T ss_dssp TCGGGSHHHHHHHHHHHTCCSCEE---ECSSSHHHHHTTCCEESE--------------EEEECTTCBEEEEECSSSCTT
T ss_pred cccccCHHHHHHHHHHhCCCceEE---ECCcchHHHHcCCCCCCe--------------EEEECCCCcEEEEEecCCccc
Confidence 78999999999999999988 455677899999999887 99999999999882
Q ss_pred -CCCCChhHHHHHHHHHHHH
Q 020776 300 -GKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 300 -~~~~~~~~l~~~l~~~L~~ 318 (321)
.+..+.+++.+.|++++++
T Consensus 141 ~~g~~~~~~l~~~i~~ll~~ 160 (188)
T 2cvb_A 141 DPSKVQSHDLEAAIEALLRG 160 (188)
T ss_dssp CGGGCCCCHHHHHHHHHHTT
T ss_pred cccccCHHHHHHHHHHHHcC
Confidence 1223677888888887753
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=186.41 Aligned_cols=147 Identities=10% Similarity=0.063 Sum_probs=122.4
Q ss_pred CCCCCCCCCCCCeEEEcC--CCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCC----cEEEEEEe
Q 020776 152 GPSVGKAAIGGPFKLINH--DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI----DIVPAFIS 225 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~--~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~----~v~vV~IS 225 (321)
.+..|+++| +|++++. +|+.+++++++||++||+||++||++ |..+++.|++++++|+++ +. ++.+|+|+
T Consensus 30 ~~~~g~~~p--~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~ 105 (183)
T 3lwa_A 30 DEADRQQLP--DIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAP-CRSESDDLQIIHEELQAA-GNGDTPGGTVLGIN 105 (183)
T ss_dssp CGGGCCCCC--CCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHHC-C---CCSEEEEEEE
T ss_pred ccccCCCCC--ceeccccccCCcEecHHHhCCCEEEEEEECCcCHh-HHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEE
Confidence 345667777 9999999 99999999999999999999999998 999999999999999876 22 33889999
Q ss_pred eCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 226 VDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 226 ~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
+|. ++++.+++|+++++++|+.+ .|....+.+.|+. |.+...|++||||++|+|++++.+..+.
T Consensus 106 ~d~--~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~-----------~~v~~~P~~~lid~~G~i~~~~~g~~~~ 169 (183)
T 3lwa_A 106 VRD--YSRDIAQDFVTDNGLDYPSI---YDPPFMTAASLGG-----------VPASVIPTTIVLDKQHRPAAVFLREVTS 169 (183)
T ss_dssp CSC--CCHHHHHHHHHHTTCCSCEE---ECTTCGGGGGTTT-----------CCTTCCSEEEEECTTSCEEEEECSCCCH
T ss_pred CCC--CCHHHHHHHHHHcCCCccEE---ECCcchHHHHhcc-----------CCCCCCCeEEEECCCCcEEEEEcCCCCH
Confidence 874 36899999999999999998 4455556666642 1223344599999999999999888899
Q ss_pred hHHHHHHHHHHHH
Q 020776 306 NSLADGIIKEIKQ 318 (321)
Q Consensus 306 ~~l~~~l~~~L~~ 318 (321)
+++.+.|.+++++
T Consensus 170 ~~l~~~l~~ll~~ 182 (183)
T 3lwa_A 170 KDVLDVALPLVDE 182 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988864
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=184.85 Aligned_cols=147 Identities=12% Similarity=0.176 Sum_probs=105.2
Q ss_pred CCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCC
Q 020776 157 KAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDT 232 (321)
Q Consensus 157 ~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt 232 (321)
..+| +|+++|.+|+++++++++||++||+||++||++ |. ++|.|++++++|+++ ++.+|+|++| ++.|+
T Consensus 10 ~~~~--~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~-C~-~~~~l~~l~~~~~~~---~v~vv~vs~d~~~~~~~d~ 82 (171)
T 3cmi_A 10 SEFY--KLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGF-TP-QYKELEALYKRYKDE---GFTIIGFPCNQFGHQEPGS 82 (171)
T ss_dssp CGGG--GCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCC-HH-HHHHHHHHHHHHGGG---TEEEEEEEECSCC------
T ss_pred hhee--eeEEEcCCCCEecHHHcCCCEEEEEEEecCCCc-ch-hHHHHHHHHHHhccC---CeEEEEEECcccCCCCCCC
Confidence 3555 999999999999999999999999999999998 99 999999999999876 6889999986 44578
Q ss_pred HHHHHHHH-HHhCCCceeecCChH-------HHHHH-HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 233 VEQVREYV-KEFHPKLIGLTGSPD-------EIRNI-ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 233 ~e~l~~~~-~~~~~~~~~l~~~~d-------~~~~~-a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
++.+++|+ ++++++|+.+..... ..+.+ .+.|++...|. +.+.+++||||++|+|++++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~--------i~~~~~~~lid~~G~i~~~~~g~~ 154 (171)
T 3cmi_A 83 DEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRG--------IKWNFEKFLVDKKGKVYERYSSLT 154 (171)
T ss_dssp ------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCS--------CCSTTCEEEECSSSCEEEEECTTS
T ss_pred HHHHHHHHHhccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCc--------ccccceEEEECCCCCEEEEeCCCC
Confidence 89999999 999999998842110 01111 23577766661 112224999999999999998888
Q ss_pred ChhHHHHHHHHHHHH
Q 020776 304 DVNSLADGIIKEIKQ 318 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~ 318 (321)
+.+++.+.|.+++++
T Consensus 155 ~~~~l~~~i~~ll~~ 169 (171)
T 3cmi_A 155 KPSSLSETIEELLKE 169 (171)
T ss_dssp CGGGGHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988864
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=182.53 Aligned_cols=145 Identities=15% Similarity=0.118 Sum_probs=121.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCC-eEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGK-WTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK-~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
..+|+++| +|+++|.+|+.+++++++|| ++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|++|
T Consensus 9 ~~~G~~~p--~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~---~~~vv~is~d--- 79 (160)
T 1xvw_A 9 LNVGATAP--DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGI-CQGELDQLRDHLPEFEND---DSAALAISVG--- 79 (160)
T ss_dssp CCTTSBCC--CCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSH-HHHHHHHHHHTGGGTSSS---SEEEEEEESC---
T ss_pred CCCCCCCC--CeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC---CcEEEEEeCC---
Confidence 78899998 99999999999999999998 9999998 999997 999999999999999755 6889999975
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCce----EeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY----YMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~----~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
+++.+++|+++++++|+++... .....+++.|++. ..|. +++||||++|+|++++.+..+.+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~v~~~~~~~p~------------~~~~lid~~G~i~~~~~g~~~~~ 145 (160)
T 1xvw_A 80 -PPPTHKIWATQSGFTFPLLSDF-WPHGAVSQAYGVFNEQAGIAN------------RGTFVVDRSGIIRFAEMKQPGEV 145 (160)
T ss_dssp -CHHHHHHHHHHHTCCSCEEECT-TTTTHHHHHTTCEETTTTEEC------------SEEEEECTTSBEEEEEECCTTCC
T ss_pred -CHHHHHHHHHhcCCCceEEecC-CcChHHHHHcCCccccCCCee------------eeEEEECCCCeEEEEEecCCCCC
Confidence 5789999999999999988321 0257789999998 4441 24999999999999987766555
Q ss_pred HHHHHHHHHHHHHh
Q 020776 307 SLADGIIKEIKQYK 320 (321)
Q Consensus 307 ~l~~~l~~~L~~~k 320 (321)
...+++.+.|++++
T Consensus 146 ~~~~~l~~~l~~l~ 159 (160)
T 1xvw_A 146 RDQRLWTDALAALT 159 (160)
T ss_dssp CCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhc
Confidence 55666777777654
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=179.64 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=108.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHH---HHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAA---AVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~---l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
...+|+++| +|++++.+|+.+++++++||+|||+||++||++ |..++|.|++ ++++|+++ ++.+|+|+.|.
T Consensus 4 ~~~~G~~ap--~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~~~~l~~~~~~~---~~~vi~i~~d~ 77 (142)
T 3eur_A 4 KNRLGTKAL--NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHA-CAEMIEGLKASPVINGFTAAK---KLKVLSIYPDE 77 (142)
T ss_dssp TTCTTSBCC--CCEEEETTSCEEETTTCCCSEEEEEECCSSSHH-HHHHHHHHHHCHHHHHHHHTT---SEEEEEEECSS
T ss_pred hhcCCCccC--CcEEEcCCCCEeeHHHcCCCEEEEEEECCCCcc-HHHHHHHHhhhHHHHHHhccC---CeEEEEEEcCC
Confidence 457899999 999999999999999999999999999999998 9999999999 99999865 78999999873
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
..+.+++|+++++.+|+.+.. .+....+++.|++...|+ +||||++|+|+++..
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 78 ---ELDEWKKHRNDFAKEWTNGYD-KELVIKNKNLYDLRAIPT--------------LYLLDKNKTVLLKDA 131 (142)
T ss_dssp ---CHHHHHHHGGGSCTTSEEEEC-TTCHHHHTTCSCCTTCSE--------------EEEECTTCBEEEEEE
T ss_pred ---CHHHHHHHHHhcccccccccC-ccchhhhhhhcCCCcCCe--------------EEEECCCCcEEecCC
Confidence 468999999999999988743 222234678888887776 999999999999864
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=191.50 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=117.3
Q ss_pred CCCCCCCeEEEcCC-CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCC
Q 020776 157 KAAIGGPFKLINHD-GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERD 231 (321)
Q Consensus 157 ~~aP~p~f~l~d~~-G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~D 231 (321)
..+| +|+++|.+ |+.++|++++||+|||+||+|||++ | .++|.|++++++|+++ ++++|+|++| .+.|
T Consensus 15 ~~~p--dF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~-c-~e~p~L~~l~~~~~~~---g~~vlgvs~d~f~~~e~~ 87 (207)
T 2r37_A 15 GTIY--EYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGL-T-GQYIELNALQEELAPF---GLVILGFPCNQFGKQEPG 87 (207)
T ss_dssp CCGG--GCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTT-T-THHHHHHHHHHHHGGG---TEEEEEEECCCBTTCCCS
T ss_pred CccC--CeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCC-h-HHHHHHHHHHHHhccC---CEEEEEEECcccCcCCCC
Confidence 3555 99999999 9999999999999999999999998 9 7999999999999877 6889999976 2346
Q ss_pred CHHHHHHHHH------HhCCCceeecCCh---H---HHHH-HHHHcC----ceEeecC---CCCCCcccccceEEEEEcC
Q 020776 232 TVEQVREYVK------EFHPKLIGLTGSP---D---EIRN-IARAYR----VYYMKTA---EEDSDYLVDHSIVMYLMSP 291 (321)
Q Consensus 232 t~e~l~~~~~------~~~~~~~~l~~~~---d---~~~~-~a~~yg----v~~~p~~---~~~~~y~v~~~~~~~LID~ 291 (321)
+++.+++|++ +++++|+++.... + ..-. +..... +...|.. .......+.|.+++||||+
T Consensus 88 ~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~ 167 (207)
T 2r37_A 88 ENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP 167 (207)
T ss_dssp CHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT
T ss_pred CHHHHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECC
Confidence 7899999999 8999998873210 0 1111 111211 1111100 0000113456677999999
Q ss_pred CCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 292 KMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 292 dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+|+|++++.+..+++++.+.|+++|++-
T Consensus 168 ~G~i~~~~~g~~~~~~l~~~I~~ll~~~ 195 (207)
T 2r37_A 168 DGIPIMRWHHRTTVSNVKMDILSYMRRQ 195 (207)
T ss_dssp TSCEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence 9999999988889999999999988754
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=193.11 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=118.4
Q ss_pred CCCCCCCCCCeEEEcCC-CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----
Q 020776 154 SVGKAAIGGPFKLINHD-GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP---- 228 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~-G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp---- 228 (321)
..+..+| +|+++|.+ |+.++|++|+||+|||+||+|||++ |. |+|.|++++++|+++ ++++|+|++|.
T Consensus 30 ~~~~~~p--dF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~-c~-e~p~L~~l~~~~~~~---g~~Vlgvs~d~f~~~ 102 (215)
T 2i3y_A 30 DEKGTIY--DYEAIALNKNEYVSFKQYVGKHILFVNVATYCGL-TA-QYPELNALQEELKPY---GLVVLGFPCNQFGKQ 102 (215)
T ss_dssp CCCCCGG--GCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGG-GG-GHHHHHHHHHHHGGG---TEEEEEEECCCSTTC
T ss_pred cccCCcC--CcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCC-hH-hHHHHHHHHHHhccC---CeEEEEEEccccCcC
Confidence 4445566 99999999 9999999999999999999999998 99 999999999999877 68899999862
Q ss_pred CCCCHHHHHHHHH------HhCCCceeecCCh---H---HHHH-HHHHcC----ceEeecCC---CCCCcccccceEEEE
Q 020776 229 ERDTVEQVREYVK------EFHPKLIGLTGSP---D---EIRN-IARAYR----VYYMKTAE---EDSDYLVDHSIVMYL 288 (321)
Q Consensus 229 ~~Dt~e~l~~~~~------~~~~~~~~l~~~~---d---~~~~-~a~~yg----v~~~p~~~---~~~~y~v~~~~~~~L 288 (321)
+.++.+.+++|++ +++++|+++.... + ..-. +..... +...|... ......+.+.+++||
T Consensus 103 e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfL 182 (215)
T 2i3y_A 103 EPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFL 182 (215)
T ss_dssp CCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEE
T ss_pred CCCCHHHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEE
Confidence 3467899999999 8999998873210 0 1111 111111 11111000 000112334567999
Q ss_pred EcCCCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 289 MSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 289 ID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
||++|+|++++.+..+++++.+.|+++|++.+
T Consensus 183 ID~~G~vv~~~~g~~~~~~l~~~I~~ll~~~~ 214 (215)
T 2i3y_A 183 VGPDGIPVMRWSHRATVSSVKTDILAYLKQFK 214 (215)
T ss_dssp ECTTSCEEEEECTTSCHHHHHHHHHHHGGGC-
T ss_pred ECCCCeEEEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999888899999999999988754
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=183.17 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCC--eEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGK--WTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK--~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
....+|+++| +|+++|.+|+++++++++|| ++||+|| ++||++ |..++|.|++++++|+++ + .+|+|++|
T Consensus 5 ~~~~~G~~~P--~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~-~vv~is~d 77 (159)
T 2a4v_A 5 NELEIGDPIP--DLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPG-STRQASGFRDNYQELKEY---A-AVFGLSAD 77 (159)
T ss_dssp TCCCTTCBCC--SCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHH-HHHHHHHHHHHHHHHTTT---C-EEEEEESC
T ss_pred CcCCCCCCCC--CeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCC-HHHHHHHHHHHHHHHHhC---C-cEEEEeCC
Confidence 4578899998 99999999999999999987 8999987 999997 999999999999999876 4 77888875
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC---
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND--- 304 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~--- 304 (321)
+++.+++|+++++++|+++ .|...++++.||+...|.. .+.+++||| ++|+|++.+.+...
T Consensus 78 ----~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~p~~--------g~~~~~~li-~~G~i~~~~~g~~~~~~ 141 (159)
T 2a4v_A 78 ----SVTSQKKFQSKQNLPYHLL---SDPKREFIGLLGAKKTPLS--------GSIRSHFIF-VDGKLKFKRVKISPEVS 141 (159)
T ss_dssp ----CHHHHHHHHHHHTCSSEEE---ECTTCHHHHHHTCBSSSSS--------CBCCEEEEE-ETTEEEEEEESCCHHHH
T ss_pred ----CHHHHHHHHHHhCCCceEE---ECCccHHHHHhCCcccccC--------CccceEEEE-cCCEEEEEEccCCcccc
Confidence 5789999999999999999 4566788999999877621 134568999 99999998866433
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.+.+.++|++++++++
T Consensus 142 ~~~~~~~l~~~l~~l~ 157 (159)
T 2a4v_A 142 VNDAKKEVLEVAEKFK 157 (159)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3566777777777765
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=178.61 Aligned_cols=140 Identities=17% Similarity=0.221 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
+.+|+++| +|++++.+|+.+++++++||++||+||++||++ |..+++.|+++++++.++ ++.+++|++|+ ++
T Consensus 2 ~~~G~~~p--~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~~~~v~v~~d~--~~ 73 (154)
T 3kcm_A 2 SLEENPAP--DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPP-CREEIPSMMRLNAAMAGK---PFRMLCVSIDE--GG 73 (154)
T ss_dssp -CTTSBCC--CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTS---SEEEEEEECCT--TH
T ss_pred CCCCCCCC--CeEEEcCCCCEEehhhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhccC---CeEEEEEEcCC--cc
Confidence 36788888 999999999999999999999999999999997 999999999999999865 68889999885 45
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC--ChhHHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN--DVNSLAD 310 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~--~~~~l~~ 310 (321)
.+.+++|+++++++|+++ .|....+++.|++...|+ +||||++|+|++.+.+.. +.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~~~l~~ 136 (154)
T 3kcm_A 74 KVAVEEFFRKTGFTLPVL---LDADKRVGKLYGTTGVPE--------------TFVIDRHGVILKKVVGAMEWDHPEVIA 136 (154)
T ss_dssp HHHHHHHHHHHCCCCCEE---ECTTCHHHHHHTCCSBCE--------------EEEECTTSBEEEEEESCCCTTSHHHHH
T ss_pred hHHHHHHHHHcCCCeeEE---ecCchHHHHHhCCCCCCe--------------EEEECCCCcEEEEEcCCCccccHHHHH
Confidence 899999999999999998 556677899999988887 999999999999877765 4556666
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
.|.++..
T Consensus 137 ~l~~l~~ 143 (154)
T 3kcm_A 137 FLNNELS 143 (154)
T ss_dssp HHHTC--
T ss_pred HHHHHHH
Confidence 6655543
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=174.87 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=119.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
..+|+++| +|++++ +|+.+++++++||++||+||++||++ |..+++.|.+++++|+++ ++.+|+|++|+ +
T Consensus 3 l~~G~~~P--~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~-C~~~~~~l~~l~~~~~~~---~~~~v~v~~d~---~ 72 (152)
T 3gl3_A 3 LDKGDKAP--DFALPG-KTGVVKLSDKTGSVVYLDFWASWCGP-CRQSFPWMNQMQAKYKAK---GFQVVAVNLDA---K 72 (152)
T ss_dssp CCTTSBCC--CCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTH-HHHHHHHHHHHHHHHGGG---TEEEEEEECCS---S
T ss_pred CCCCCcCC--ceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC---CeEEEEEECCC---C
Confidence 56888998 999999 99999999999999999999999998 999999999999999876 58889999885 4
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC--ChhHHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN--DVNSLAD 310 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~--~~~~l~~ 310 (321)
.+.+++|.++++.+|+.+ .|...++++.|++...|+ +||||++|+|++.+.+.. +.+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~~~l~~ 135 (152)
T 3gl3_A 73 TGDAMKFLAQVPAEFTVA---FDPKGQTPRLYGVKGMPT--------------SFLIDRNGKVLLQHVGFRPADKEALEQ 135 (152)
T ss_dssp HHHHHHHHHHSCCCSEEE---ECTTCHHHHHTTCCSSSE--------------EEEECTTSBEEEEEESCCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCcee---ECCcchhHHHcCCCCCCe--------------EEEECCCCCEEEEEccCCCcCHHHHHH
Confidence 789999999999999988 555667899999988886 899999999999876644 3356666
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
.|++++.
T Consensus 136 ~i~~~~~ 142 (152)
T 3gl3_A 136 QILAALG 142 (152)
T ss_dssp HHHHHTC
T ss_pred HHHHHHc
Confidence 6665543
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-24 Score=191.02 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCCeEEEcC--CC--Ceeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 152 GPSVGKAAIGGPFKLINH--DG--KNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~--~G--~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
...+|+++| +|++++. +| ++++++++ +||+|||+|| ++||++ |..++|.|++++++|+++ ++.+|+|+
T Consensus 24 ~l~~G~~aP--~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~-C~~e~p~l~~l~~~~~~~---~v~vv~Is 97 (221)
T 2c0d_A 24 LSLVTKKAY--NFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFV-CPTEIIEFNKHIKDFENK---NVELLGIS 97 (221)
T ss_dssp --CTTSBCC--CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTC-CHHHHHHHHHTHHHHHHT---TEEEEEEE
T ss_pred cCCCCCCCC--CeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHC---CCEEEEEe
Confidence 467899998 9999999 99 99999999 9999999999 999997 999999999999999876 68889999
Q ss_pred eCCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 226 VDPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 226 ~Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+| +++.+++|++++ +++|+++ .|...++++.|++. ... + ...|++||||++|+|++.
T Consensus 98 ~D----~~~~~~~~~~~~~~~~g~~~~~fp~l---~D~~~~~~~~ygv~-~~~---g-----~~~P~~~lID~~G~I~~~ 161 (221)
T 2c0d_A 98 VD----SVYSHLAWKNMPIEKGGIGNVEFTLV---SDINKDISKNYNVL-YDN---S-----FALRGLFIIDKNGCVRHQ 161 (221)
T ss_dssp SS----CHHHHHHHHHSCGGGTCCCSCSSEEE---ECTTSHHHHHTTCE-ETT---T-----EECEEEEEECTTSBEEEE
T ss_pred CC----CHHHHHHHHHHhhhhcCccCCceEEE---ECCchHHHHHcCCc-ccC---C-----CccceEEEECCCCeEEEE
Confidence 74 578899999998 7889988 55667899999996 211 0 134569999999999998
Q ss_pred eCCC----CChhHHHHHHHHHH
Q 020776 299 FGKN----NDVNSLADGIIKEI 316 (321)
Q Consensus 299 ~~~~----~~~~~l~~~l~~~L 316 (321)
+.+. .+.+++.+.|+++.
T Consensus 162 ~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 162 TVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp EEECTTCCCCHHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHh
Confidence 7543 34566666666554
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=181.34 Aligned_cols=143 Identities=19% Similarity=0.275 Sum_probs=119.2
Q ss_pred CCCCCCCCCCeEEEcCCCC----eeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 154 SVGKAAIGGPFKLINHDGK----NVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G~----~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.+|+++| +|++++.+|+ ++++++++||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|++|+
T Consensus 2 ~~G~~~P--~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~---~v~vv~vs~d~ 75 (187)
T 1we0_A 2 LIGTEVQ--PFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFV-CPTELEDVQKEYAELKKL---GVEVYSVSTDT 75 (187)
T ss_dssp CTTCBCC--CCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSS-CTHHHHHHHHHHHHHHHT---TEEEEEEESSC
T ss_pred CCCCcCC--CeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcc-hHHHHHHHHHHHHHHHHc---CCEEEEEECCC
Confidence 5788888 9999999999 99999999999999999 999997 999999999999999876 68899999764
Q ss_pred CCCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC-
Q 020776 229 ERDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN- 303 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~- 303 (321)
++.+++|++++ +++|+++ .|...++++.|++..... -.+.|++||||++|+|++.+.+..
T Consensus 76 ----~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~~~--------g~~~P~~~lid~~G~i~~~~~g~~~ 140 (187)
T 1we0_A 76 ----HFVHKAWHENSPAVGSIEYIMI---GDPSQTISRQFDVLNEET--------GLADRGTFIIDPDGVIQAIEINADG 140 (187)
T ss_dssp ----HHHHHHHHHSCHHHHTCCSEEE---ECTTCHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEEEEECTT
T ss_pred ----HHHHHHHHHHhccccCCCceEE---ECCchHHHHHhCCCcCCC--------CceeeEEEEECCCCeEEEEEecCCC
Confidence 68899999998 8999988 455578899999983211 013445999999999999876654
Q ss_pred ---ChhHHHHHHHHHHH
Q 020776 304 ---DVNSLADGIIKEIK 317 (321)
Q Consensus 304 ---~~~~l~~~l~~~L~ 317 (321)
+.+++.+.|++++.
T Consensus 141 ~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 141 IGRDASTLINKVKAAQY 157 (187)
T ss_dssp SCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 56777777777664
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=185.81 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=117.1
Q ss_pred CCCCCCCCCCeEEEcC-CC--CeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLINH-DG--KNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~-~G--~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.+|+++| +|++++. +| +++++++++||++||+||+ +|||+ |..++|.|++++++|+++ ++.+|+|++|
T Consensus 2 ~~G~~aP--~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~-C~~e~~~l~~~~~~~~~~---~v~vv~Is~d-- 73 (186)
T 1n8j_A 2 LINTKIK--PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-SPTELGDVADHYEELQKL---GVDVYSVSTD-- 73 (186)
T ss_dssp CTTCBCC--CCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSH-HHHHHHHHHHHHHHHHHT---TEEEEEEESS--
T ss_pred CCCCcCC--CcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCc-cHHHHHHHHHHHHHHHHC---CCEEEEEECC--
Confidence 5788888 9999999 59 8999999999999999995 99997 999999999999999876 6889999975
Q ss_pred CCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC--
Q 020776 230 RDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN-- 303 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~-- 303 (321)
+++.+++|++++ +++|+++ .|...++++.||+..... . .+.|++||||++|+|++.+.+..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~fp~l---~D~~~~~~~~ygv~~~~~-----g---~~~p~~~lID~~G~i~~~~~~~~~~ 140 (186)
T 1n8j_A 74 --THFTHKAWHSSSETIAKIKYAMI---GDPTGALTRNFDNMREDE-----G---LADRATFVVDPQGIIQAIEVTAEGI 140 (186)
T ss_dssp --CHHHHHHHHHHCTTGGGCCSEEE---ECTTSHHHHHTTCEETTT-----T---EECEEEEEECTTSBEEEEEEECTTB
T ss_pred --CHHHHHHHHHHcCcccCCceeEE---ECCchHHHHHhCCccCCC-----C---ceeeEEEEECCCCeEEEEEecCCCC
Confidence 478899999999 8899988 556678999999975211 0 13567999999999999875543
Q ss_pred --ChhHHHHHHHHHH
Q 020776 304 --DVNSLADGIIKEI 316 (321)
Q Consensus 304 --~~~~l~~~l~~~L 316 (321)
+.+++.+.|+++.
T Consensus 141 ~~~~~~l~~~l~~l~ 155 (186)
T 1n8j_A 141 GRDASDLLRKIKAAQ 155 (186)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 4566666665554
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-24 Score=177.76 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=116.9
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+|.+. .+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++| +.+.+++|+++
T Consensus 7 ~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~---~v~vv~v~~d----~~~~~~~~~~~ 77 (151)
T 3raz_A 7 ELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGP-CRKEMPAMSKWYKAQKKG---SVDMVGIALD----TSDNIGNFLKQ 77 (151)
T ss_dssp CEEET-TTCCEECGGGCCSSEEEEEEECTTCHH-HHHHHHHHHHHHHTSCTT---TEEEEEEESS----CHHHHHHHHHH
T ss_pred hhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhccC---CeEEEEEECC----ChHHHHHHHHH
Confidence 66554 799999999999999999999999998 999999999999999654 7899999975 46899999999
Q ss_pred hCCCceeecCChHHHHHHHHHcC--ceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYR--VYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~yg--v~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++++|+.+....+....+++.|+ +...|+ +||||++|+|++.+.+..+.+++.+.|+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 78 TPVSYPIWRYTGANSRNFMKTYGNTVGVLPF--------------TVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK 141 (151)
T ss_dssp SCCSSCEEEECCSCHHHHHHTTTCCSCCSSE--------------EEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred cCCCCceEecCccchHHHHHHhCCccCCCCE--------------EEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999998766666788999999 777776 999999999999999999988888888777654
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=177.23 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
.....|+++| +|+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|+.
T Consensus 7 ~~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~---~~~vv~i~~d~~- 79 (152)
T 2lrt_A 7 EDKIKEASII--DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAM-SAAHNLALRELYNKYASQ---GFEIYQISLDGD- 79 (152)
T ss_dssp CSSSCTTCSC--CCCEEBTTSCEECTTTGGGSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG---TEEEEEEECSCC-
T ss_pred hhhccCCCCC--CeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChh-hHHHHHHHHHHHHHhccC---CeEEEEEEccCC-
Confidence 4556778888 999999999999999999999999999999998 999999999999999876 688999999853
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
.+.+++|.+. ++|+.+.........+++.|++...|+ +||||++|+|++++.+..+.++..
T Consensus 80 --~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~e~~~ 140 (152)
T 2lrt_A 80 --EHFWKTSADN--LPWVCVRDANGAYSSYISLYNVTNLPS--------------VFLVNRNNELSARGENIKDLDEAI 140 (152)
T ss_dssp --HHHHHHHHTT--CSSEEEECSSGGGCHHHHHHTCCSCSE--------------EEEEETTTEEEEETTTCSCHHHHH
T ss_pred --HHHHHHHHhC--CCceEEECCCCcchHHHHHcCcccCce--------------EEEECCCCeEEEecCCHHHHHHHH
Confidence 4677888754 678888544433335899999988887 999999999999987766655433
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-24 Score=183.60 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=120.0
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|.++| +|+++|.+|+.+++++++||++||+||++||++ |..+++.|++++++|+++ ++.+|+|++|.
T Consensus 32 ~~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~~~~~---~~~vv~v~~d~-- 103 (186)
T 1jfu_A 32 TMASAPLKLP--DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSGP---NFEVVAINIDT-- 103 (186)
T ss_dssp EECCSCCBCC--CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHCBT---TEEEEEEECCC--
T ss_pred ccccCCCcCC--CcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHh-HHHHHHHHHHHHHHhccC---CcEEEEEECCC--
Confidence 3467788888 999999999999999999999999999999997 999999999999999754 68899999985
Q ss_pred CCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC--hhH
Q 020776 231 DTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND--VNS 307 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~--~~~ 307 (321)
++++.+++|++++++ .|+.+ .|....+.+.|++.+. ..+.|++||||++|+|++++.+..+ .++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~----------~~~~P~~~lid~~G~i~~~~~g~~~~~~~~ 170 (186)
T 1jfu_A 104 RDPEKPKTFLKEANLTRLGYF---NDQKAKVFQDLKAIGR----------ALGMPTSVLVDPQGCEIATIAGPAEWASED 170 (186)
T ss_dssp SCTTHHHHHHHHTTCCTTCCE---ECTTCHHHHHHHTTTC----------CSSSSEEEEECTTSBEEEEEESCCCTTSHH
T ss_pred CCHHHHHHHHHHcCCCCCceE---ECCcchHHHHhccccc----------cCCCCEEEEECCCCCEEEEEecCCccCHHH
Confidence 456789999999998 47777 4555678888887510 1123459999999999998877654 677
Q ss_pred HHHHHHHHHHH
Q 020776 308 LADGIIKEIKQ 318 (321)
Q Consensus 308 l~~~l~~~L~~ 318 (321)
+.+.|++++++
T Consensus 171 l~~~l~~ll~~ 181 (186)
T 1jfu_A 171 ALKLIRAATGK 181 (186)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 77777777653
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-24 Score=176.08 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCCCCCCCCCeEE--EcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 154 SVGKAAIGGPFKL--INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 154 ~vG~~aP~p~f~l--~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
.+|+++| +|++ ++.+|+.+++++++||++||+||++||++ |..+++.|+++++++.++ +.+++|++|+..+
T Consensus 2 ~~g~~~P--~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~l~~~~~~~----~~~~~v~~~~~~~ 74 (148)
T 2b5x_A 2 KLRQPMP--ELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHL-CKEAMPQVNEFRDKYQDQ----LNVVAVHMPRSED 74 (148)
T ss_dssp CTTCBCC--CCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT----SEEEEEECCCSTT
T ss_pred CCCCCCC--CCccccccccCcccchhhcCCCEEEEEEEcCCCHH-HHHHhHHHHHHHHHhcCC----cEEEEEEcCCCcc
Confidence 5788888 9998 78999999999999999999999999998 999999999999999753 7788888876433
Q ss_pred --CHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 232 --TVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 232 --t~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
+++.+++|+++++++|+.+ .|....+++.|++...|+ ++|||++|++++.+.+..+.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~ 137 (148)
T 2b5x_A 75 DLDPGKIKETAAEHDITQPIF---VDSDHALTDAFENEYVPA--------------YYVFDKTGQLRHFQAGGSGMKMLE 137 (148)
T ss_dssp TSSHHHHHHHHHHTTCCSCEE---ECSSCHHHHHTCCCCSSE--------------EEEECTTCBEEEEEESCSTTHHHH
T ss_pred ccCHHHHHHHHHHcCCCcceE---ECCchhHHHHhCCCCCCE--------------EEEECCCCcEEEEecCCCCHHHHH
Confidence 7899999999999999988 455567899999988887 999999999999988888888888
Q ss_pred HHHHHHHHH
Q 020776 310 DGIIKEIKQ 318 (321)
Q Consensus 310 ~~l~~~L~~ 318 (321)
+.|.+++++
T Consensus 138 ~~l~~~l~~ 146 (148)
T 2b5x_A 138 KRVNRVLAE 146 (148)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 888888764
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-24 Score=178.37 Aligned_cols=141 Identities=23% Similarity=0.320 Sum_probs=125.1
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
...+|+++| +|++++.+|+.+++++++ |++||+||++||++ |..+++.|+++++++ ++.+++|++|+ .|
T Consensus 4 ~l~~g~~~p--~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~-C~~~~~~l~~l~~~~------~v~~v~v~~d~-~~ 72 (154)
T 3ia1_A 4 AVKPGEPLP--DFLLLDPKGQPVTPATVS-KPAVIVFWASWCTV-CKAEFPGLHRVAEET------GVPFYVISREP-RD 72 (154)
T ss_dssp CCCSBEECC--CCCEECTTSCEECTTTSC-SSEEEEEECTTCHH-HHHHHHHHHHHHHHH------CCCEEEEECCT-TC
T ss_pred cCCCCCcCC--ceEEECCCCCEechHHcC-CeEEEEEEcccChh-HHHHHHHHHHHHHHc------CCeEEEEeCCC-cc
Confidence 577888988 999999999999999999 99999999999997 999999999999998 26677888874 47
Q ss_pred CHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 232 TVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 232 t~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
+.+.+++|+++++++|+.+....+....+++.|++...|+ +||||++|+|++.+.+..+.+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~~~ 138 (154)
T 3ia1_A 73 TREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPW--------------TFVVDREGKVVALFAGRAGREALLDA 138 (154)
T ss_dssp CHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCE--------------EEEECTTSEEEEEEESBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccE--------------EEEECCCCCEEEEEcCCCCHHHHHHH
Confidence 8999999999999999998654457788999999988886 99999999999999888888888888
Q ss_pred HHHHHH
Q 020776 312 IIKEIK 317 (321)
Q Consensus 312 l~~~L~ 317 (321)
|+++++
T Consensus 139 l~~~~~ 144 (154)
T 3ia1_A 139 LLLAGA 144 (154)
T ss_dssp HHHTTC
T ss_pred HHhccC
Confidence 877654
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-24 Score=181.96 Aligned_cols=138 Identities=18% Similarity=0.284 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD---- 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D---- 227 (321)
...+|+++| +|++++.+|+.+++++++||++||+||++||++ |..+++.|++++++++ ++.+|+|++|
T Consensus 10 ~~~~g~~~p--~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~-C~~~~~~l~~l~~~~~-----~v~vv~i~~d~~~~ 81 (165)
T 3ha9_A 10 SEEVLEREA--SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPS-CVYMADLLDRLTEKYR-----EISVIAIDFWTAEA 81 (165)
T ss_dssp HHHHHHHHH--CCCEEBTTSCEECGGGCCSSEEEEEEECTTCTT-HHHHHHHHHHHHHHCT-----TEEEEEEECCSHHH
T ss_pred cccccCcCC--CCEeecCCCCEeeHHHhCCCEEEEEEECCCCcc-hhhhHHHHHHHHHHcC-----CcEEEEEEeccccc
Confidence 345777888 999999999999999999999999999999998 9999999999999886 4889999998
Q ss_pred -----------CCCCCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 228 -----------PERDTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 228 -----------p~~Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
++.++.+.+++|++++++ +|+.+ .| ...+++.|++..+|+ +||||++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d-~~~~~~~~~v~~~P~--------------~~lid~~G~i 143 (165)
T 3ha9_A 82 LKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMV---MD-DGSLVEKFNVRSIDY--------------IVIMDKSSNV 143 (165)
T ss_dssp HHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEE---EC-CSHHHHHTTCCSSSE--------------EEEEETTCCE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHcCCCCeeEE---eC-hHHHHHHhCCCCceE--------------EEEEcCCCcE
Confidence 344789999999999999 99998 44 578899999988887 9999999999
Q ss_pred EEEeCCCC-ChhHHHHHHHHHHH
Q 020776 296 VKFFGKNN-DVNSLADGIIKEIK 317 (321)
Q Consensus 296 v~~~~~~~-~~~~l~~~l~~~L~ 317 (321)
++ .+.. +.+++.+.|.++++
T Consensus 144 ~~--~g~~~~~~~l~~~l~~l~~ 164 (165)
T 3ha9_A 144 LY--AGTTPSLGELESVIKSVQG 164 (165)
T ss_dssp EE--EEESCCHHHHHHHHHHC--
T ss_pred EE--eCCCCCHHHHHHHHHHHhc
Confidence 99 3555 77777777766553
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=183.49 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=115.2
Q ss_pred CCCCCCCCCCeEEEcC--CCC---eeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 154 SVGKAAIGGPFKLINH--DGK---NVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~--~G~---~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.+|+++| +|++++. +|+ +++++++ +||++||+|| ++||++ |..++|.|++++++|+++ ++.+|+|++
T Consensus 2 ~~G~~~P--~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~l~~~~~~~---~v~vv~Is~ 75 (198)
T 1zof_A 2 VVTKLAP--DFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFV-CPTEIIAFDKRVKDFHEK---GFNVIGVSI 75 (198)
T ss_dssp CTTSBCC--CCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSS-CCTHHHHHHHTHHHHHHT---TEEEEEEES
T ss_pred CCCCcCC--ceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 5788888 9999999 898 9999999 9999999999 999997 999999999999999876 688999997
Q ss_pred CCCCCCHHHHHHHHHH-------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVKE-------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~-------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|+ ++.+++|+++ ++++|+++ .|...++++.|++.... + .+.|++||||++|+|++.+
T Consensus 76 d~----~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~~----g-----~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 76 DS----EQVHFAWKNTPVEKGGIGQVSFPMV---ADITKSISRDYDVLFEE----A-----IALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp SC----HHHHHHHHTSCGGGTCCCCCSSCEE---ECTTSHHHHHTTCEETT----T-----EECEEEEEEETTTEEEEEE
T ss_pred CC----HHHHHHHHHhhhhcccccCceeEEE---ECCchHHHHHhCCcccC----C-----cccceEEEECCCCEEEEEE
Confidence 63 6899999998 78889888 55667889999998310 0 1334499999999999987
Q ss_pred CCCC----ChhHHHHHHHHHH
Q 020776 300 GKNN----DVNSLADGIIKEI 316 (321)
Q Consensus 300 ~~~~----~~~~l~~~l~~~L 316 (321)
.+.. +.+++.+.|.++.
T Consensus 140 ~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 140 INDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp EESSSCCCHHHHHHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHH
Confidence 6654 3445555554443
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=183.24 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=117.0
Q ss_pred CCCCCCCCCCCCeEEEcCC-------------C--CeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhc
Q 020776 152 GPSVGKAAIGGPFKLINHD-------------G--KNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENS 215 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~-------------G--~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~ 215 (321)
...+|+++| +|++++.+ | +.+++++++||++||+|| ++||++ |..+++.|++++++|+++
T Consensus 3 ~l~~G~~~P--~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~l~~~~~~~- 78 (195)
T 2bmx_A 3 LLTIGDQFP--AYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFV-CPTEIAAFSKLNDEFEDR- 78 (195)
T ss_dssp BCCTTCBCC--CCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCC-CHHHHHHHHHTHHHHHTT-
T ss_pred cCCCCCcCC--CcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCC-cHHHHHHHHHHHHHHHHC-
Confidence 367899998 99999998 7 899999999999999999 999997 999999999999999865
Q ss_pred CCcEEEEEEeeCCCCCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC
Q 020776 216 GIDIVPAFISVDPERDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP 291 (321)
Q Consensus 216 g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~ 291 (321)
++.+|+|++|+ ++.+++|++++ +++|+++ .|....+++.|++... . + .+.|++||||+
T Consensus 79 --~v~vv~Vs~d~----~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~-~---g-----~~~P~~~lid~ 140 (195)
T 2bmx_A 79 --DAQILGVSIDS----EFAHFQWRAQHNDLKTLPFPML---SDIKRELSQAAGVLNA-D---G-----VADRVTFIVDP 140 (195)
T ss_dssp --TEEEEEEESSC----HHHHHHHHHHCTTGGGCCSCEE---ECTTSHHHHHHTCBCT-T---S-----SBCEEEEEECT
T ss_pred --CCEEEEEECCC----HHHHHHHHHHhccccCCceeEE---eCCchHHHHHhCCccc-C---C-----CccceEEEEcC
Confidence 68899999764 68999999998 8889888 4555788999999821 0 0 13345999999
Q ss_pred CCeEEEEeCCCC----ChhHHHHHHHHHH
Q 020776 292 KMEFVKFFGKNN----DVNSLADGIIKEI 316 (321)
Q Consensus 292 dG~Iv~~~~~~~----~~~~l~~~l~~~L 316 (321)
+|+|++.+.+.. +.+++.+.|.+++
T Consensus 141 ~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 141 NNEIQFVSATAGSVGRNVDEVLRVLDALQ 169 (195)
T ss_dssp TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 999999876654 4555555555544
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=190.18 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=118.4
Q ss_pred CCCCCCCCCCCCCeEEEcC---CCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 151 QGPSVGKAAIGGPFKLINH---DGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~---~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
....+|+++| +|++++. +|+++++++++||+|||+||+ +||++ |..++|.|++++++|+++ ++.+|+|++
T Consensus 38 ~~l~~G~~aP--~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~-C~~~~p~l~~l~~~~~~~---~v~vv~Is~ 111 (222)
T 3ztl_A 38 MVLLPNRPAP--EFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFV-CPTEIIAFSDQVEEFNSR---NCQVIACST 111 (222)
T ss_dssp --CCSSEECC--CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSH-HHHHHHHHHHTHHHHHTT---TEEEEEEES
T ss_pred ccccCCCCCC--CeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC---CCEEEEEEC
Confidence 4678999999 9999955 559999999999999999997 99997 999999999999999866 688999997
Q ss_pred CCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
| +++...+|++.+ +++|+++ .|....+++.|++...... ...|++||||++|+|++.+
T Consensus 112 D----~~~~~~~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~ygv~~~~~g--------~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 112 D----SQYSHLAWDNLDRKSGGLGHMKIPLL---ADRKQEISKAYGVFDEEDG--------NAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp S----CHHHHHHHHHSCGGGTSCCSCSSCEE---ECSSSHHHHHTTCBCTTTS--------SBCEEEEEECTTSEEEEEE
T ss_pred C----CHHHHHHHHHHhhhhccccccceeEE---eCCchHHHHHcCCeecCCC--------CccceEEEECCCCeEEEEE
Confidence 5 467888888876 8899988 5556788999999732110 1235599999999999998
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 020776 300 GKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 300 ~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+....+...+++.+.|++++
T Consensus 177 ~g~~~~~~~~~~il~~l~~l~ 197 (222)
T 3ztl_A 177 INDKPVGRSVDETLRLLDAFQ 197 (222)
T ss_dssp EECTTBCCCHHHHHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHhh
Confidence 666555544566666665543
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-24 Score=188.73 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=115.7
Q ss_pred cCCCCCCCCCCCCCeEEEcC---CCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 150 KQGPSVGKAAIGGPFKLINH---DGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~---~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
...+.+|+++| +|++++. +|+++++++++||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|+
T Consensus 16 ~~~~~~G~~aP--~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~-C~~e~~~l~~l~~~~~~~---~v~vv~Is 89 (211)
T 2pn8_A 16 ENLYFQSMPAP--YWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFV-CPTEIIAFGDRLEEFRSI---NTEVVACS 89 (211)
T ss_dssp ---CCSSCBCC--CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHTHHHHHTT---TEEEEEEE
T ss_pred cccCCCCCcCC--CeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEE
Confidence 34678899998 9999974 56899999999999999999 999997 999999999999999875 68899999
Q ss_pred eCCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 226 VDPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 226 ~Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+| +++.+++|++++ +++|+++ .|...++++.||+..... -...|++||||++|+|++.
T Consensus 90 ~D----~~~~~~~~~~~~~~~~g~~~~~fp~l---~D~~~~~~~~ygv~~~~~--------g~~~p~~~lID~~G~I~~~ 154 (211)
T 2pn8_A 90 VD----SQFTHLAWINTPRRQGGLGPIRIPLL---SDLTHQISKDYGVYLEDS--------GHTLRGLFIIDDKGILRQI 154 (211)
T ss_dssp SS----CHHHHHHHHTSCGGGTCCCSCSSCEE---ECTTSHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEE
T ss_pred CC----CHHHHHHHHHHhhhccCccCCceEEE---ECCchHHHHHcCCcccCC--------CcccceEEEECCCCEEEEE
Confidence 74 578899999988 7889888 455678999999964210 0134569999999999998
Q ss_pred eCCCC----ChhHHHHHHHHHH
Q 020776 299 FGKNN----DVNSLADGIIKEI 316 (321)
Q Consensus 299 ~~~~~----~~~~l~~~l~~~L 316 (321)
+.+.. +.+++.+.|+++.
T Consensus 155 ~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 155 TLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp EEECTTBCCCHHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHhh
Confidence 75543 4455555555543
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=180.27 Aligned_cols=127 Identities=18% Similarity=0.172 Sum_probs=107.5
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
......+|+++| +|+++|.+|+++++++++||++||+|| ++||++ |..+++.|++++++ + ++.+|+|+.
T Consensus 16 ~~~~l~~G~~aP--~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~-C~~~~~~l~~~~~~---~---~~~vv~is~- 85 (166)
T 3p7x_A 16 KGQQINEGDFAP--DFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGV-CDQQTRKFNSDASK---E---EGIVLTISA- 85 (166)
T ss_dssp ESCCCCTTSBCC--CCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHH-HHHHHHHHHHHSCT---T---TSEEEEEES-
T ss_pred ecccCCCCCCCC--CeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCc-cHHHHHHHHHHhhc---C---CCEEEEEEC-
Confidence 345678999999 999999999999999999999999999 789997 99999999999877 2 477888885
Q ss_pred CCCCCHHHHHHHHHHhCC-CceeecCChHH-HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 228 PERDTVEQVREYVKEFHP-KLIGLTGSPDE-IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~-~~~~l~~~~d~-~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|+++.+++|++++++ +|+.+ .|. ..++++.||+..... ..+.|++||||++|+|++.+
T Consensus 86 ---d~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~gv~~~~~--------g~~~p~~~liD~~G~i~~~~ 145 (166)
T 3p7x_A 86 ---DLPFAQKRWCASAGLDNVITL---SDHRDLSFGENYGVVMEEL--------RLLARAVFVLDADNKVVYKE 145 (166)
T ss_dssp ---SCHHHHHHHHHHHTCSSCEEE---ECTTTCHHHHHHTCEETTT--------TEECCEEEEECTTCBEEEEE
T ss_pred ---CCHHHHHHHHHHcCCCceEEc---cCCchhHHHHHhCCccccC--------CceeeEEEEECCCCeEEEEE
Confidence 568999999999999 89998 455 568999999986221 11345699999999999984
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=178.93 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
....+|+++| +|+++|.+|+++++++++||++||+||+ +||++ |..+++.|++++++| + ++.+|+|++|
T Consensus 14 ~~~~~G~~~P--~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~-C~~~~~~l~~~~~~~--~---~v~vv~is~d-- 83 (163)
T 1psq_A 14 KQLQVGDKAL--DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGI-CSTQTRRFNEELAGL--D---NTVVLTVSMD-- 83 (163)
T ss_dssp CCCCTTSBCC--CCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHH-HHHHHHHHHHHTTTC--T---TEEEEEEESS--
T ss_pred CCCCCCCCCC--CEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCc-cHHHHHHHHHHHHHc--C---CcEEEEEECC--
Confidence 4577899988 9999999999999999999999999995 99997 999999999999988 3 5888999975
Q ss_pred CCCHHHHHHHHHHhCC-CceeecCChH-HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 230 RDTVEQVREYVKEFHP-KLIGLTGSPD-EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~-~~~~l~~~~d-~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+++.+++|++++++ +|+++ .| ....+++.|++...+. . .+.|++||||++|+|++.+.+
T Consensus 84 --~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~gv~~~~~-------g-~~~p~~~liD~~G~i~~~~~g 144 (163)
T 1psq_A 84 --LPFAQKRWCGAEGLDNAIML---SDYFDHSFGRDYALLINEW-------H-LLARAVFVLDTDNTIRYVEYV 144 (163)
T ss_dssp --CHHHHHHHHHHHTCTTSEEE---ECTTTCHHHHHHTCBCTTT-------C-SBCCEEEEECTTCBEEEEEEC
T ss_pred --CHHHHHHHHHhcCCCCcEEe---cCCchhHHHHHhCCccccC-------C-ceEEEEEEEcCCCeEEEEEec
Confidence 57889999999999 99988 45 5678899999875321 0 134669999999999998754
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=181.60 Aligned_cols=140 Identities=24% Similarity=0.245 Sum_probs=113.4
Q ss_pred CCCCCCCCCCeEEEcC--CC--Ceeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 154 SVGKAAIGGPFKLINH--DG--KNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~--~G--~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.+|+++| +|++++. +| +.++++++ +||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|++|
T Consensus 1 ~~G~~aP--~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~-C~~~~~~l~~~~~~~~~~---~v~vv~Is~d 74 (192)
T 2h01_A 1 AFQGQAP--SFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFV-CPSEIIALDKALDSFKER---NVELLGCSVD 74 (192)
T ss_dssp CCSSBCC--CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSS-CCHHHHHHHHTHHHHHHT---TEEEEEEESS
T ss_pred CCCCcCC--CcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEEeC
Confidence 3688888 9999999 99 99999999 9999999999 999997 999999999999999876 6889999975
Q ss_pred CCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++.+++|++++ +++|+++ .|...++++.|++.. .. + ...|++||||++|+|++.+.
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~-~~---g-----~~~P~~~liD~~G~i~~~~~ 138 (192)
T 2h01_A 75 ----SKFTHLAWKKTPLSQGGIGNIKHTLI---SDISKSIARSYDVLF-NE---S-----VALRAFVLIDKQGVVQHLLV 138 (192)
T ss_dssp ----CHHHHHHHHTSCGGGTCCCSCSSEEE---ECTTSHHHHHTTCEE-TT---T-----EECCEEEEECTTSBEEEEEE
T ss_pred ----CHHHHHHHHHhHHhhCCccCCCcCeE---ECCcHHHHHHhCCcC-cC---C-----ceeeEEEEEcCCCEEEEEEe
Confidence 578999999988 7889988 455678899999983 10 0 12344999999999999875
Q ss_pred CCCC----hhHHHHHHHHH
Q 020776 301 KNND----VNSLADGIIKE 315 (321)
Q Consensus 301 ~~~~----~~~l~~~l~~~ 315 (321)
+... .+++.+.|+++
T Consensus 139 g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 139 NNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp GGGSSGGGHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 5433 34444444443
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=186.29 Aligned_cols=145 Identities=23% Similarity=0.222 Sum_probs=118.7
Q ss_pred cCCCCCCCCCCCCCeEEEcC--CC--Ceeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEE
Q 020776 150 KQGPSVGKAAIGGPFKLINH--DG--KNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~--~G--~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~ 223 (321)
.....+|+++| +|++++. +| ++++++++ +||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+
T Consensus 18 ~~~l~~G~~aP--~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~-C~~~~~~l~~l~~~~~~~---~v~vv~ 91 (213)
T 2i81_A 18 GSPTYVGKEAP--FFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFV-CPSEIIALDKALDAFHER---NVELLG 91 (213)
T ss_dssp --CCCBTSBCC--CCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSH-HHHHHHHHHHTHHHHHHT---TEEEEE
T ss_pred CccccCCCcCC--CeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEE
Confidence 34578999998 9999999 89 89999999 9999999999 999997 999999999999999876 688999
Q ss_pred EeeCCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE
Q 020776 224 ISVDPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV 296 (321)
Q Consensus 224 IS~Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv 296 (321)
|++| +++.+++|++++ +++|+++ .|...++++.|++.. .. + .+.|.+||||++|+|+
T Consensus 92 Is~D----~~~~~~~~~~~~~~~~g~~~~~fp~l---~D~~~~~~~~ygv~~-~~---g-----~~~p~~~lID~~G~i~ 155 (213)
T 2i81_A 92 CSVD----SKYTHLAWKKTPLAKGGIGNIKHTLL---SDITKSISKDYNVLF-DD---S-----VSLRAFVLIDMNGIVQ 155 (213)
T ss_dssp EESS----CHHHHHHHHSSCGGGTCCCSCSSEEE---ECTTSHHHHHTTCEE-TT---T-----EECEEEEEECTTSBEE
T ss_pred EeCC----CHHHHHHHHHHHHhhCCccCCCceEE---ECCchHHHHHhCCcc-cc---C-----CcccEEEEECCCCEEE
Confidence 9975 578999999988 7889988 566778999999983 10 0 1345599999999999
Q ss_pred EEeCCCC----ChhHHHHHHHHHH
Q 020776 297 KFFGKNN----DVNSLADGIIKEI 316 (321)
Q Consensus 297 ~~~~~~~----~~~~l~~~l~~~L 316 (321)
+.+.+.. +.+++.+.|+++.
T Consensus 156 ~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 156 HLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHHH
Confidence 9875543 3566666665544
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=198.98 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=131.6
Q ss_pred CCCCCCCCCCCCCeE-----EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 151 QGPSVGKAAIGGPFK-----LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~-----l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
....+|+++| +|+ +.+.+|+.+++++++||+|||+||++||++ |+.++|.|++++++|+++ ++.+|+|+
T Consensus 49 ~~l~vG~~aP--dF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~-C~~~~p~L~~l~~~~~~~---~v~vi~Vs 122 (352)
T 2hyx_A 49 AQLESCGTAP--DLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCIN-CQRAIPHVVGWYQAYKDS---GLAVIGVH 122 (352)
T ss_dssp SSCCCCCBCC--CCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG---TEEEEEEE
T ss_pred cccCCCCcCC--CccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHhhcC---CeEEEEEE
Confidence 4578899988 999 999999999999999999999999999998 999999999999999876 68899999
Q ss_pred eCC--CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 226 VDP--ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 226 ~Dp--~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
+|+ ..++++.+++|+++++++|+++ .|....+++.|++...|+ +||||++|+|++.+.+..
T Consensus 123 ~d~~~~~d~~~~~~~~~~~~~l~fpv~---~D~~~~l~~~ygV~~~Pt--------------~~lID~~G~Iv~~~~G~~ 185 (352)
T 2hyx_A 123 TPEYAFEKVPGNVAKGAANLGISYPIA---LDNNYATWTNYRNRYWPA--------------EYLIDATGTVRHIKFGEG 185 (352)
T ss_dssp CCSSGGGGCHHHHHHHHHHHTCCSCEE---ECTTSHHHHHTTCCEESE--------------EEEECTTSBEEEEEESBC
T ss_pred CCcccccCCHHHHHHHHHHcCCCccEE---eCCcHHHHHHcCCCccCE--------------EEEEeCCCeEEEEEcCCC
Confidence 874 2468999999999999999988 556677899999999887 999999999999988888
Q ss_pred ChhHHHHHHHHHHHHH
Q 020776 304 DVNSLADGIIKEIKQY 319 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~~ 319 (321)
+.+++.+.|++++++.
T Consensus 186 ~~~~l~~~I~~lL~e~ 201 (352)
T 2hyx_A 186 DYNVTETLVRQLLNDA 201 (352)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999988764
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=179.22 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=117.3
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.....+|+++| +|+++|.+|+++++++++||++||+|| ++||++ |..+++.|++++++| + ++.+|+|++|
T Consensus 18 ~~~l~~g~~~P--~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~-C~~~~~~l~~~~~~~--~---~v~vv~Is~d- 88 (171)
T 2yzh_A 18 GPELKVGDRAP--EAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPV-CETETKKFNEIMAGM--E---GVDVTVVSMD- 88 (171)
T ss_dssp SCCCCTTSBCC--CEEEEETTSCEEEESSCCSSEEEEEECSCTTSHH-HHHHHHHHHHHTTTC--T---TEEEEEEESS-
T ss_pred CCcCCCCCcCC--ceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCc-hHHHHHHHHHHHHHc--C---CceEEEEeCC-
Confidence 34578899988 999999999999999999999999999 899997 999999999999988 3 5889999975
Q ss_pred CCCCHHHHHHHHHHhCC-CceeecCChH-HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC-----
Q 020776 229 ERDTVEQVREYVKEFHP-KLIGLTGSPD-EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK----- 301 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~-~~~~l~~~~d-~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~----- 301 (321)
+++.+++|++++++ +|+++ .| ...++ +.|++...+... +. .+.|++||||++|+|++.+.+
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~l---~D~~~~~~-~~~gv~~~~~~~----~g-~~~p~~~liD~~G~i~~~~~~~~~~~ 156 (171)
T 2yzh_A 89 ---LPFAQKRFCESFNIQNVTVA---SDFRYRDM-EKYGVLIGEGAL----KG-ILARAVFIIDKEGKVAYVQLVPEITE 156 (171)
T ss_dssp ---CHHHHHHHHHHTTCCSSEEE---ECTTTCGG-GGGTCBBCSSTT----TT-SBCCEEEEECTTSBEEEEEECSBTTS
T ss_pred ---CHHHHHHHHHHcCCCCeEEe---ecCccCcH-HHhCCEeccccc----CC-ceeeEEEEEcCCCeEEEEEeCCCcCC
Confidence 57889999999999 89988 44 45677 999987643210 00 246789999999999998743
Q ss_pred CCChhHHHHHHHHH
Q 020776 302 NNDVNSLADGIIKE 315 (321)
Q Consensus 302 ~~~~~~l~~~l~~~ 315 (321)
..+.+++.+.|+++
T Consensus 157 ~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 157 EPNYDEVVNKVKEL 170 (171)
T ss_dssp CCCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhh
Confidence 33456666666554
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=183.02 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=117.1
Q ss_pred CCCCCCCCCCCCeEEEcC--CC--CeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 152 GPSVGKAAIGGPFKLINH--DG--KNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~--~G--~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
...+|+++| +|++++. +| +.+++++++||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|++
T Consensus 5 ~~~~G~~aP--~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~-C~~~~~~l~~l~~~~~~~---~v~vi~Is~ 78 (202)
T 1uul_A 5 EAEDLHPAP--DFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFV-CPTEICQFSDRVKEFSDI---GCEVLACSM 78 (202)
T ss_dssp CCCTTSBCC--CCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSH-HHHHHHHHHHTHHHHHTT---TEEEEEEES
T ss_pred cccCCCcCC--CcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeC
Confidence 567899998 9999998 78 899999999999999999 999997 999999999999999865 688999997
Q ss_pred CCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
| +++.+++|++++ +++|+++ .|...++++.|++..... -.+.|++||||++|+|++.+
T Consensus 79 D----~~~~~~~~~~~~~~~~~~~~~~~p~l---~D~~~~~~~~ygv~~~~~--------g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 79 D----SEYSHLAWTSIERKRGGLGQMNIPIL---ADKTKCIMKSYGVLKEED--------GVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp S----CHHHHHHHHHSCGGGTCCCSCSSCEE---ECTTCHHHHHHTCEETTT--------TEECEEEEEECTTSBEEEEE
T ss_pred C----CHHHHHHHHHHHHhhCCCCCCceeEE---ECCchHHHHHcCCccCCC--------CceeeEEEEECCCCEEEEEE
Confidence 5 468899999988 7889988 556678999999983211 01345599999999999987
Q ss_pred CCCCC----hhHHHHHHHHHH
Q 020776 300 GKNND----VNSLADGIIKEI 316 (321)
Q Consensus 300 ~~~~~----~~~l~~~l~~~L 316 (321)
.+... .+++.+.|+++.
T Consensus 144 ~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 144 VNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp EECTTBCCCHHHHHHHHHHHH
T ss_pred eCCCCCCCCHHHHHHHHHHhh
Confidence 55443 455555555544
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=189.05 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=119.3
Q ss_pred ccCCCCCCCCCCCCCeEEEc---CCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEE
Q 020776 149 VKQGPSVGKAAIGGPFKLIN---HDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 224 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d---~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~I 224 (321)
......+|+++| +|++++ .+|++++|++++||++||+||+ +||++ |..+++.|++++++|+++ ++.+|+|
T Consensus 44 ~~~~l~vG~~aP--dF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~-C~~el~~l~~l~~~~~~~---gv~vv~I 117 (240)
T 3qpm_A 44 HLSKAKISKPAP--QWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFV-CPTEIIAFSDRVHEFRAI---NTEVVAC 117 (240)
T ss_dssp EECSCCTTSBCC--CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHHHHHHHTT---TEEEEEE
T ss_pred ccCcCCCCCCCC--CcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHC---CCEEEEE
Confidence 345678999999 999874 4567999999999999999999 99997 999999999999999876 6889999
Q ss_pred eeCCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 225 SVDPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
|+| +++.+++|++.+ +++|+++ .|...++++.||+.....+ ...|.+||||++|+|++
T Consensus 118 s~D----~~~~~~~~~~~~~~~~~~~~~~fp~l---~D~~~~v~~~ygv~~~~~g--------~~~p~~flID~~G~I~~ 182 (240)
T 3qpm_A 118 SVD----SQFTHLAWIITPRKQGGLGPMKIPLL---SDLTHQISKDYGVYLEDQG--------HTLRGLFIIDEKGVLRQ 182 (240)
T ss_dssp ESS----CHHHHHHHHHSCGGGTCCCSCSSCEE---ECTTSHHHHHTTCEETTTT--------EECEEEEEECTTSBEEE
T ss_pred ECC----CHHHHHHHHHHHHhhcCCCCCceeEE---eCchHHHHHHhCCccccCC--------CccceEEEEcCCCeEEE
Confidence 975 468889999886 7899988 5666889999999842210 13456999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHHHH
Q 020776 298 FFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 298 ~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
.+.+........+++.+.|+++
T Consensus 183 ~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 183 ITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp EEEECTTBCCCHHHHHHHHHHH
T ss_pred EEecCCCCCCCHHHHHHHHHHh
Confidence 8755544444445555555544
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=179.18 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
....+|+++| +|+++|.+|+.+++++++||++||+|| ++||++ |..+++.|++++++| + ++.+|+|++|
T Consensus 15 ~~~~~G~~~P--~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~--~---~v~vv~Is~d-- 84 (165)
T 1q98_A 15 HFPQVGEIVE--NFILVGNDLADVALNDFASKRKVLNIFPSIDTGV-CATSVRKFNQQAAKL--S---NTIVLCISAD-- 84 (165)
T ss_dssp CCCCTTCBCC--CCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSC-CCHHHHHHHHHHHHS--T---TEEEEEEESS--
T ss_pred ccCCCCCCCC--CeEEECCCCCEEehHHhCCCeEEEEEECCCCCCc-cHHHHHHHHHHHHHc--C---CCEEEEEeCC--
Confidence 4578899988 999999999999999999999999999 799997 999999999999999 3 5888999974
Q ss_pred CCCHHHHHHHHHHhCC-CceeecCChHH-HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 230 RDTVEQVREYVKEFHP-KLIGLTGSPDE-IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~-~~~~l~~~~d~-~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+++.+++|++++++ +|+++. |. ...+++.|++...... .+. .+.|++||||++|+|++.+.+
T Consensus 85 --~~~~~~~~~~~~~~~~~~~l~---D~~~~~~~~~~gv~~~~~~----~~g-~~~p~~~liD~~G~i~~~~~~ 148 (165)
T 1q98_A 85 --LPFAQARFCGAEGIENAKTVS---TFRNHALHSQLGVDIQTGP----LAG-LTSRAVIVLDEQNNVLHSQLV 148 (165)
T ss_dssp --CHHHHTTCTTTTTCTTEEEEE---CTTCTHHHHHTTCEECSST----TTT-SBCCEEEEECTTSBEEEEEEC
T ss_pred --CHHHHHHHHHHcCCCceEEee---ccccchHHHHhCceecccc----cCC-ccceeEEEEcCCCEEEEEEeC
Confidence 57889999999999 799884 43 5788999999764311 011 256889999999999998753
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-24 Score=179.50 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=116.9
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.....+|+++| +|+++|.+|+++++++++||++||+||++| |++ |..++|.|++++++| + ++.+|+|++|
T Consensus 15 ~~~~~~G~~~p--~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~-C~~~~~~l~~l~~~~--~---~~~vv~is~d- 85 (167)
T 2jsy_A 15 GQEVKVGDQAP--DFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGV-CDAQTRRFNEEAAKL--G---DVNVYTISAD- 85 (167)
T ss_dssp SCCCCTTSCCC--CCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSH-HHHTHHHHHHHHHHH--S---SCEEEEEECS-
T ss_pred cCccCCCCcCC--ceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCc-hHHHHHHHHHHHHHc--C---CCEEEEEECC-
Confidence 34578899998 999999999999999999999999999999 997 999999999999999 3 5788899976
Q ss_pred CCCCHHHHHHHHHHhCC-CceeecCChH-HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC----
Q 020776 229 ERDTVEQVREYVKEFHP-KLIGLTGSPD-EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN---- 302 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~-~~~~l~~~~d-~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~---- 302 (321)
+++.+++|++++++ +|+.+ .| ...++++.|++...+.. .+.|++||||++|+|++.+.+.
T Consensus 86 ---~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~v~~~~~g--------~~~p~~~lid~~G~i~~~~~g~~~~~ 151 (167)
T 2jsy_A 86 ---LPFAQARWCGANGIDKVETL---SDHRDMSFGEAFGVYIKELR--------LLARSVFVLDENGKVVYAEYVSEATN 151 (167)
T ss_dssp ---SGGGTSCCGGGSSCTTEEEE---EGGGTCHHHHHTTCBBTTTC--------SBCCEEEEECTTSCEEEEEECSBTTS
T ss_pred ---CHHHHHHHHHhcCCCCceEe---eCCchhHHHHHhCCccccCC--------ceeeEEEEEcCCCcEEEEEecCCcCC
Confidence 35678899999999 89988 55 56788999998764210 1245699999999999987432
Q ss_pred -CChhHHHHHHHHHH
Q 020776 303 -NDVNSLADGIIKEI 316 (321)
Q Consensus 303 -~~~~~l~~~l~~~L 316 (321)
.+.+++.+.|++++
T Consensus 152 ~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 152 HPNYEKPIEAAKALV 166 (167)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh
Confidence 23456666666554
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=170.16 Aligned_cols=141 Identities=21% Similarity=0.206 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
..+|+++| ++|++++.+|+.+++++++||++||+||++||++ |..+++.|+++++++.++ ++.+++|++|. .
T Consensus 3 l~~G~~~p-~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~l~~~~~~~---~~~~v~v~~d~---~ 74 (152)
T 2lja_A 3 LRSGNPSA-ASFSYPDINGKTVSLADLKGKYIYIDVWATWCGP-CRGELPALKELEEKYAGK---DIHFVSLSCDK---N 74 (152)
T ss_dssp TTTTCCCS-SSCEEEETTTEEEESTTTTTSEEEEEECCSSCCG-GGGTHHHHHHHHHHSTTS---SEEEEEEECCS---C
T ss_pred cccCCCCC-cccEeecCCCCEeeHHHcCCCEEEEEEECCcCHh-HHHHhHHHHHHHHHhccC---CeEEEEEEccC---c
Confidence 34666665 4999999999999999999999999999999998 999999999999999754 68899999884 3
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+.+++|++++++++..+. .|...++++.|++...|+ +||||++|+|++.+.+..+.+++.+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~~~l 138 (152)
T 2lja_A 75 KKAWENMVTKDQLKGIQLH--MGTDRTFMDAYLINGIPR--------------FILLDRDGKIISANMTRPSDPKTAEKF 138 (152)
T ss_dssp HHHHHHHHHHHTCCSEEEE--CSSCTHHHHHTTCCSSCC--------------EEEECTTSCEEESSCCCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceee--cCcchhHHHHcCcCCCCE--------------EEEECCCCeEEEccCCCCCHHHHHHHH
Confidence 5889999999998875554 334567899999998887 999999999999988888888888887
Q ss_pred HHHHH
Q 020776 313 IKEIK 317 (321)
Q Consensus 313 ~~~L~ 317 (321)
.+++.
T Consensus 139 ~~~~~ 143 (152)
T 2lja_A 139 NELLG 143 (152)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77664
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=173.79 Aligned_cols=143 Identities=14% Similarity=0.208 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCC--------CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 151 QGPSVGKAAIGGPFKLINHDG--------KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G--------~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
....+|+++| +|++++.+| +.+++++++||++||+||++||++ |..+++.|++++++ . ++.++
T Consensus 6 ~~~~~g~~~p--~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~-C~~~~~~l~~l~~~---~---~v~~v 76 (156)
T 1kng_A 6 PSALIGRPAP--QTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVP-CHDEAPLLTELGKD---K---RFQLV 76 (156)
T ss_dssp ------CBCC--CCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHTTC---T---TSEEE
T ss_pred hhHHhCCCCC--CceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHh-HHHHHHHHHHHHhc---C---CeEEE
Confidence 3567899988 999999999 999999999999999999999998 99999999998765 1 47788
Q ss_pred EEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 223 FISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 223 ~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+|++| ++.+.+++|+++++++|+.+. .|....+++.|++...|+ +||||++|++++.+.+.
T Consensus 77 ~v~~~---~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~~~P~--------------~~~id~~G~i~~~~~g~ 137 (156)
T 1kng_A 77 GINYK---DAADNARRFLGRYGNPFGRVG--VDANGRASIEWGVYGVPE--------------TFVVGREGTIVYKLVGP 137 (156)
T ss_dssp EEEES---CCHHHHHHHHHHHCCCCSEEE--EETTSHHHHHTTCCSSCE--------------EEEECTTSBEEEEEESC
T ss_pred EEECC---CCHHHHHHHHHHcCCCCceee--eCchhHHHHhcCcCccCe--------------EEEEcCCCCEEEEEeCC
Confidence 88887 568999999999999998332 455567899999988886 89999999999998888
Q ss_pred CChhHHHHHHHHHHHHHhC
Q 020776 303 NDVNSLADGIIKEIKQYKR 321 (321)
Q Consensus 303 ~~~~~l~~~l~~~L~~~kk 321 (321)
.+.+++.+.|.++++++++
T Consensus 138 ~~~~~l~~~l~~~l~~~~~ 156 (156)
T 1kng_A 138 ITPDNLRSVLLPQMEKALK 156 (156)
T ss_dssp CCHHHHHHTHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 8999999999999988753
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=182.95 Aligned_cols=145 Identities=19% Similarity=0.227 Sum_probs=114.5
Q ss_pred CCCCCCCCCCCCCeEEEc---CCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 151 QGPSVGKAAIGGPFKLIN---HDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d---~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
....+|+++| +|++++ .+|+++++++++||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|++
T Consensus 25 ~~l~~G~~aP--~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~-C~~~~~~l~~l~~~~~~~---~v~vv~Is~ 98 (220)
T 1zye_A 25 PAPAVTQHAP--YFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFV-CPTEIIAFSDKASEFHDV---NCEVVAVSV 98 (220)
T ss_dssp --CCTTSBCC--CCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSS-SHHHHHHHHHHHHHHHHT---TEEEEEEES
T ss_pred CcccCCCCCC--CcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEEC
Confidence 4578999998 999984 578999999999999999999 999997 999999999999999876 688999998
Q ss_pred CCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
| +.+.+++|++++ +++|+++ .|...++++.|++..... -...|++||||++|+|++.+
T Consensus 99 D----~~~~~~~~~~~~~~~~g~~~~~fp~l---~D~~~~i~~~ygv~~~~~--------g~~~P~~~liD~~G~I~~~~ 163 (220)
T 1zye_A 99 D----SHFSHLAWINTPRKNGGLGHMNIALL---SDLTKQISRDYGVLLEGP--------GLALRGLFIIDPNGVIKHLS 163 (220)
T ss_dssp S----CHHHHHHHHTSCGGGTCCCSCSSEEE---ECTTSHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEEE
T ss_pred C----CHHHHHHHHHHHHHhCCCcCCceEEE---ECCcHHHHHHhCCeecCC--------CcccceEEEECCCCEEEEEE
Confidence 6 357888999887 7889988 556678999999982110 01234499999999999986
Q ss_pred CCCC----ChhHHHHHHHHHH
Q 020776 300 GKNN----DVNSLADGIIKEI 316 (321)
Q Consensus 300 ~~~~----~~~~l~~~l~~~L 316 (321)
.+.. +.+++.+.|+++.
T Consensus 164 ~g~~~~~~~~~ell~~l~~l~ 184 (220)
T 1zye_A 164 VNDLPVGRSVEETLRLVKAFQ 184 (220)
T ss_dssp EECTTCCCCHHHHHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHhh
Confidence 5543 3355555554443
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=176.27 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=114.3
Q ss_pred hccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 148 AVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 148 ~~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.......+|+++| +|++++.+|+.+++++++||++||+||++||++ |..+++.|++++++|++. ++.+|+|++|
T Consensus 10 ~~~~~~~~G~~~p--~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~-C~~~~~~l~~~~~~~~~~---~~~~v~v~~d 83 (158)
T 3hdc_A 10 SDAPLVRTGALAP--NFKLPTLSGENKSLAQYRGKIVLVNFWASWCPY-CRDEMPSMDRLVKSFPKG---DLVVLAVNVE 83 (158)
T ss_dssp CCSCCCCTTSBCC--CCEEECTTSCEEESGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHSSTT---SEEEEEEECS
T ss_pred cCCcccCCCCcCC--CceeEcCCCCEEehHHhCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHcccC---CeEEEEEeCC
Confidence 3456788999999 999999999999999999999999999999997 999999999999999855 6889999987
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
+ .+++|.++++++|+++ .|....+.+.|++...|+ +||||++|+|++++.|..+.+
T Consensus 84 ~------~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 84 K------RFPEKYRRAPVSFNFL---SDATGQVQQRYGANRLPD--------------TFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp S------SCCGGGGGCCCSCEEE---ECTTSHHHHHTTCCSSSE--------------EEEECTTSBEEEEEESCCCTT
T ss_pred H------HHHHHHHHcCCCceEE---ECchHHHHHHhCCCCcce--------------EEEEcCCCCEEEEEeCCCccc
Confidence 5 4667888999999988 555678899999988886 899999999999987766544
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=166.31 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=115.9
Q ss_pred CCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 156 G~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
|.++| +|++++.+|+.+++++++||++||+||++||++ |..+++.|+++++++. ++.++.|++| ++.+.
T Consensus 2 ~~~~p--~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~~v~~~---~~~~~ 70 (136)
T 1zzo_A 2 VPAQL--QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPT-CQGEAPVVGQVAASHP-----EVTFVGVAGL---DQVPA 70 (136)
T ss_dssp CCGGG--CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEECS---SCHHH
T ss_pred CCCCC--CcccccCCCCEeeHHHhCCCeEEEEEEcCCChh-HHHHHHHHHHHHHHcC-----CeEEEEEeCC---CCHHH
Confidence 34556 999999999999999999999999999999998 9999999999999885 4777888877 56799
Q ss_pred HHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 236 VREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 236 l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++|++++++ +|+.+ .|....+++.|++...|+ ++|||++|+++ .+.+..+.+++.+.|.+
T Consensus 71 ~~~~~~~~~~~~~~~~---~d~~~~~~~~~~i~~~P~--------------~~~id~~g~i~-~~~g~~~~~~l~~~l~~ 132 (136)
T 1zzo_A 71 MQEFVNKYPVKTFTQL---ADTDGSVWANFGVTQQPA--------------YAFVDPHGNVD-VVRGRMSQDELTRRVTA 132 (136)
T ss_dssp HHHHHHHTTCTTSEEE---ECTTCHHHHHTTCCSSSE--------------EEEECTTCCEE-EEESCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEEE---EcCCcHHHHHcCCCCCce--------------EEEECCCCCEE-EEecCCCHHHHHHHHHH
Confidence 9999999999 99988 455577899999988887 99999999999 87788888888888877
Q ss_pred HHH
Q 020776 315 EIK 317 (321)
Q Consensus 315 ~L~ 317 (321)
+++
T Consensus 133 ~l~ 135 (136)
T 1zzo_A 133 LTS 135 (136)
T ss_dssp HC-
T ss_pred Hhc
Confidence 764
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=174.03 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=121.5
Q ss_pred cCCCCCCCCCCCCCeEEEcC--CCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 150 KQGPSVGKAAIGGPFKLINH--DGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~--~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.....+|+++| +|++++. +|+.++++++ +||++||+||++||++ |..++|.|++++++ ++.+++|++
T Consensus 19 ~~~~~~G~~~P--~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~-C~~~~~~l~~l~~~-------~v~vv~v~~ 88 (168)
T 2b1k_A 19 LESALIGKPVP--KFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSAQ-------GIRVVGMNY 88 (168)
T ss_dssp CCCTTTTSBCC--CCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHH-HHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred ccccccCCcCC--CeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHC-------CCEEEEEEC
Confidence 34578999998 9999999 9999999885 8999999999999998 99999999988764 366678888
Q ss_pred CCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
| ++.+.+++|+++++++|+.+. .|....+++.|++...|+ +||||++|+|++.+.+..+.+
T Consensus 89 ~---~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~ 149 (168)
T 2b1k_A 89 K---DDRQKAISWLKELGNPYALSL--FDGDGMLGLDLGVYGAPE--------------TFLIDGNGIIRYRHAGDLNPR 149 (168)
T ss_dssp S---CCHHHHHHHHHHHCCCCSEEE--EETTCHHHHHHTCCSSSE--------------EEEECTTSBEEEEEESCCCHH
T ss_pred C---CChHHHHHHHHHcCCCCceee--ECcchHHHHHcCccccCE--------------EEEECCCCeEEEEEeCCCCHH
Confidence 7 457899999999999987432 345567899999988886 899999999999988888999
Q ss_pred HHHHHHHHHHHHHh
Q 020776 307 SLADGIIKEIKQYK 320 (321)
Q Consensus 307 ~l~~~l~~~L~~~k 320 (321)
++.+.|.+++++.+
T Consensus 150 ~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 150 VWEEEIKPLWEKYS 163 (168)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887654
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=165.39 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=112.1
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC--CCCCHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--ERDTVEQVREY 239 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--~~Dt~e~l~~~ 239 (321)
|+|+++|.+|+.+++++++||++||+||++||++ |..+++.|+++++++.+ ++.++.|..+. ..++.+.+++|
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~v~i~~~~~~~~~~~~~~~~~ 77 (138)
T 4evm_A 3 ADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSI-CLASLPDTDEIAKEAGD----DYVVLTVVSPGHKGEQSEADFKNW 77 (138)
T ss_dssp CCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHH-HHHHHHHHHHHHHTCTT----TEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHHhCC----CcEEEEEEcCCCCchhhHHHHHHH
Confidence 4999999999999999999999999999999998 99999999999988543 58888885432 34789999999
Q ss_pred HHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 240 VKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 240 ~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++++. +|+.+ .|....+++.|++...|+ ++|||++|+|++.+.+..+.+++.+.|.+
T Consensus 78 ~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 78 YKGLDYKNLPVL---VDPSGKLLETYGVRSYPT--------------QAFIDKEGKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HTTCCCTTCCEE---ECTTCHHHHHTTCCSSSE--------------EEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred HhhcCCCCeeEE---ECcchHHHHHcCcccCCe--------------EEEECCCCcEEEeecCCCcHHHHHHHHHh
Confidence 999998 88888 455667899999988887 99999999999998888887766665544
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-23 Score=166.05 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=113.0
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
|+|++++.+|+.+++++++||++||+||++||++ |..+++.|+++++++. ++.++.|++| ++.+.+++|++
T Consensus 5 p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~~v~~~---~~~~~~~~~~~ 75 (136)
T 1lu4_A 5 LQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPF-CNAEAPSLSQVAAANP-----AVTFVGIATR---ADVGAMQSFVS 75 (136)
T ss_dssp GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEECS---SCHHHHHHHHH
T ss_pred CCeEeecCCCCeecHHHhCCCEEEEEEECCcChh-HHHHHHHHHHHHHHCC-----CcEEEEEEcC---CCHHHHHHHHH
Confidence 3999999999999999999999999999999998 9999999999999885 4777888876 45899999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC---CCCChhHHHHHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG---KNNDVNSLADGIIKEI 316 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~---~~~~~~~l~~~l~~~L 316 (321)
+++++|+.+ .|....+++.|++...|+ ++|+|++|+|+ ++. |..+.+++.+.|.+++
T Consensus 76 ~~~~~~~~~---~d~~~~~~~~~~i~~~P~--------------~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 76 KYNLNFTNL---NDADGVIWARYNVPWQPA--------------FVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp HHTCCSEEE---ECTTSHHHHHTTCCSSSE--------------EEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred HcCCCceEE---ECCchhHHHhcCCCCCCE--------------EEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 999999988 456677899999988887 99999999999 887 8888888877777654
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=176.96 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCeEEE--cCCC--Ceeeccc-cCCCeEEEEEe-cCCCCCCcH-HHHHHHHHHHHHHhhhcCCcEE-EEEE
Q 020776 153 PSVGKAAIGGPFKLI--NHDG--KNVTEKD-FLGKWTVIYFG-FTHCPDICP-DELQKLAAAVDKIKENSGIDIV-PAFI 224 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~--d~~G--~~vsLsd-~kGK~vLL~Fw-atwCp~vC~-~elp~L~~l~~~~~~~~g~~v~-vV~I 224 (321)
..+|+++| +|+++ |.+| +++++++ ++||++||+|| ++||++ |. .++|.|++++++|+++ ++. +|+|
T Consensus 4 ~~~G~~aP--~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~-C~~~e~~~l~~~~~~~~~~---~v~~vv~I 77 (162)
T 1tp9_A 4 IAVGDVLP--DGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPT-CSLKHVPGFIEKAGELKSK---GVTEILCI 77 (162)
T ss_dssp CCTTCBCC--CCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHH-HHHTHHHHHHHHHHHHHHT---TCCCEEEE
T ss_pred CCCCCCCC--CeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHC---CCCEEEEE
Confidence 57889998 99986 8999 9999999 89999999999 899997 99 8999999999999876 566 7888
Q ss_pred eeCCCCCCHHHHHHHHHHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 225 SVDPERDTVEQVREYVKEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
|+| +++.+++|++++++ +|+++ .|...+++++||+....... .+.+.+.|++|||| +|+|++.+.+.
T Consensus 78 s~d----~~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~---g~~~~~~p~~~vid-~G~i~~~~~~~ 146 (162)
T 1tp9_A 78 SVN----DPFVMKAWAKSYPENKHVKFL---ADGSATYTHALGLELDLQEK---GLGTRSRRFALLVD-DLKVKAANIEG 146 (162)
T ss_dssp ESS----CHHHHHHHHHTCTTCSSEEEE---ECTTSHHHHHTTCEEEETTT---TSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred ECC----CHHHHHHHHHhcCCCCCeEEE---ECCCchHHHHcCcccccccC---CCCccceeEEEEEE-CCEEEEEEeeC
Confidence 864 57899999999999 89988 56668899999998654211 12233567899999 99999987554
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=176.79 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=105.1
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
......+|+++| +|+++|.+|+.+++++++||++||+||++| |++ |..++|.|++++++ + ++.+|+|++|
T Consensus 14 ~~~~l~~G~~~P--~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~-C~~~~~~l~~l~~~---~---~v~vv~Is~D 84 (175)
T 1xvq_A 14 VGELPAVGSPAP--AFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPV-CATSVRTFDERAAA---S---GATVLCVSKD 84 (175)
T ss_dssp SSCCCCTTSBCC--CCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSC-CCHHHHHHHHHHHH---T---TCEEEEEESS
T ss_pred cCCCCCcCCcCC--CeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCch-HHHHHHHHHHHHhh---c---CCEEEEEECC
Confidence 344578899998 999999999999999999999999999999 897 99999999999988 2 4778889974
Q ss_pred CCCCCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++.+++|++++++ +|+++ .|....+++.|++...+... +. .+.|.+||||++|+|++.+.
T Consensus 85 ----~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~----~g-~~~p~~~lid~~G~I~~~~~ 146 (175)
T 1xvq_A 85 ----LPFAQKRFCGAEGTENVMPA---SAFRDSFGEDYGVTIADGPM----AG-LLARAIVVIGADGNVAYTEL 146 (175)
T ss_dssp ----CHHHHTTCC------CEEEE---ECTTSSHHHHTTCBBCSSTT----TT-SBCSEEEEECTTSBEEEEEE
T ss_pred ----CHHHHHHHHHHcCCCCceEe---eCCHHHHHHHhCCccccccc----CC-cccceEEEECCCCeEEEEEE
Confidence 56889999999998 89888 44457789999998764211 11 35677999999999999874
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=187.72 Aligned_cols=149 Identities=15% Similarity=0.236 Sum_probs=118.9
Q ss_pred cCCCCCCCCCCCCCeEEE---cCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 150 KQGPSVGKAAIGGPFKLI---NHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~---d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
.....+|+++| +|+++ |.+|++++|++++||++||+|| ++||++ |..+++.|++++++|+++ ++.+|+|+
T Consensus 59 ~~~l~vG~~aP--dF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~-C~~el~~l~~l~~~~~~~---gv~vv~IS 132 (254)
T 3tjj_A 59 LSKAKISKPAP--YWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFV-CPTEIIAFGDRLEEFRSI---NTEVVACS 132 (254)
T ss_dssp CCCCCTTSBCC--CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSS-CCHHHHHHHHTHHHHHTT---TEEEEEEE
T ss_pred ccccCCCCCCC--CcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCc-hHHHHHHHHHHHHHHHHc---CCEEEEEc
Confidence 45678999999 99977 4567899999999999999999 999997 999999999999999876 68899999
Q ss_pred eCCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 226 VDPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 226 ~Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+| +++.+++|++.+ +++|+++ .|...++++.||+...... ...|.+||||++|+|++.
T Consensus 133 ~D----~~~~~~~~~~~~~~~~g~~~~~fp~l---~D~~~~va~~ygv~~~~~g--------~~~p~tflID~~G~I~~~ 197 (254)
T 3tjj_A 133 VD----SQFTHLAWINTPRRQGGLGPIRIPLL---SDLTHQISKDYGVYLEDSG--------HTLRGLFIIDDKGILRQI 197 (254)
T ss_dssp SS----CHHHHHHHHTSCGGGTSCCSCSSCEE---ECTTSHHHHHHTCEETTTT--------EECEEEEEECTTSBEEEE
T ss_pred CC----CHHHHHHHHHHHHHhcCCccccccee---eCcHHHHHHHcCCccccCC--------CccceEEEECCCCeEEEE
Confidence 75 468888998876 7889988 5666889999999752210 134569999999999998
Q ss_pred eCCCCChhHHHHHHHHHHHHH
Q 020776 299 FGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 299 ~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+.+....+...+++.+.|+++
T Consensus 198 ~~~~~~~~~~~~eil~~L~al 218 (254)
T 3tjj_A 198 TLNDLPVGRSVDETLRLVQAF 218 (254)
T ss_dssp EEECTTCCCCHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHhh
Confidence 765444444445555555544
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=178.52 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=114.8
Q ss_pred cCCCCCCCCCCCCCeEEE-cCCCCeeeccc-cCCCeEEEE-EecCCCCCCcH-HHHHHHHHHHHHHhhhcCCcEEEEE-E
Q 020776 150 KQGPSVGKAAIGGPFKLI-NHDGKNVTEKD-FLGKWTVIY-FGFTHCPDICP-DELQKLAAAVDKIKENSGIDIVPAF-I 224 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~-d~~G~~vsLsd-~kGK~vLL~-FwatwCp~vC~-~elp~L~~l~~~~~~~~g~~v~vV~-I 224 (321)
...+.+|+++| +|+++ +.+|++++|++ ++||++||+ ||++|||+ |. .|+|.|++++++|+++ ++.+|+ |
T Consensus 12 ~~~~~vG~~aP--df~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~-C~~~e~p~l~~~~~~~~~~---gv~vv~~i 85 (173)
T 3mng_A 12 SAPIKVGDAIP--AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPG-CSKTHLPGFVEQAEALKAK---GVQVVACL 85 (173)
T ss_dssp -CCCCTTCBCC--CCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHH-HHHTHHHHHHHTHHHHHTT---TCCEEEEE
T ss_pred CCCCCCCCCCC--CeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhC---CCEEEEEE
Confidence 45788999999 99999 99999999999 699976665 56999997 99 5999999999999876 456665 8
Q ss_pred eeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcc-cccceEEEEEcCCCeEEEEeCC
Q 020776 225 SVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYL-VDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~-v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
|.| +++.+++|+++++.+ |+++ .|...+++++||+....... ..+. ....|++|||| +|+|++.+.+
T Consensus 86 S~D----~~~~~~~f~~~~~~~~~fp~l---~D~~~~va~~yGv~~~~~~~--~~~g~~~~~r~tfvID-dG~I~~~~v~ 155 (173)
T 3mng_A 86 SVN----DAFVTGEWGRAHKAEGKVRLL---ADPTGAFGKETDLLLDDSLV--SIFGNRRLKRFSMVVQ-DGIVKALNVE 155 (173)
T ss_dssp ESS----CHHHHHHHHHHTTCTTTCEEE---ECTTCHHHHHHTCBCCSTTH--HHHSSCCBCCEEEEEE-TTEEEEEEEC
T ss_pred cCC----CHHHHHHHHHHhCCCCceEEE---ECCChHHHHHhCCCcccccc--cccCCcceEEEEEEEE-CCEEEEEEEe
Confidence 864 578999999999988 9999 67778999999997532100 0000 12457799999 9999998755
Q ss_pred CCChhHHHHHHHHHHH
Q 020776 302 NNDVNSLADGIIKEIK 317 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~ 317 (321)
......-..+++++|+
T Consensus 156 ~~~~g~~~~~~~~vl~ 171 (173)
T 3mng_A 156 PDGTGLTCSLAPNIIS 171 (173)
T ss_dssp TTSSCSSTTSHHHHHH
T ss_pred CCCCCcchHHHHHHHH
Confidence 4432222333444444
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-23 Score=180.22 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=112.2
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
......+|+++| +|+++|.+|+.++|++++||+|||+|| ++||++ |..+++.|++++++| + ++.+|+||.|
T Consensus 48 ~~~~l~~G~~aP--df~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~-C~~e~~~l~~l~~~~--~---~v~vv~Is~D 119 (200)
T 3zrd_A 48 AGKLPQIGDKAK--DFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGV-CAASVRKFNQLAGEL--E---NTVVLCISSD 119 (200)
T ss_dssp ESCCCCTTCBCC--CCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSC-CCHHHHHHHHHHHTS--T---TEEEEEEESS
T ss_pred ecccCCCCCCCC--CeEEECCCCCEEcHHHhCCCcEEEEEECCCCCch-hHHHHHHHHHHHHHh--C---CCEEEEEECC
Confidence 445688999999 999999999999999999999999999 679997 999999999999999 3 5888999964
Q ss_pred CCCCCHHHHHHHHHHhCC-CceeecCChHH-HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVKEFHP-KLIGLTGSPDE-IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~-~~~~l~~~~d~-~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++.+++|++++++ +|+.+ .|. ..+++++||+...... .+. .+.|++||||++|+|++.+.
T Consensus 120 ----~~~~~~~~~~~~~~~~f~~l---~D~~~~~~~~~ygv~~~~~~----~~g-~~~p~~~lID~~G~I~~~~~ 182 (200)
T 3zrd_A 120 ----LPFAQSRFCGAEGLSNVITL---STLRGADFKQAYGVAITEGP----LAG-LTARAVVVLDGQDNVIYSEL 182 (200)
T ss_dssp ----CHHHHTTCTTTTTCTTEEEE---ETTSCTHHHHHTTCEECSST----TTT-SBCCEEEEECTTSBEEEEEE
T ss_pred ----CHHHHHHHHHHcCCCCceEE---ecCchHHHHHHhCceeeccc----CCC-ccccEEEEECCCCeEEEEEe
Confidence 67899999999999 99988 555 6789999999764311 011 25678999999999999863
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-23 Score=174.78 Aligned_cols=133 Identities=13% Similarity=0.078 Sum_probs=109.6
Q ss_pred CCCCCCCCCCCeEEE-cCCCCeeecccc-CCCeEEEEEe-cCCCCCCcHH-HHHHHHHHHHHHhhhcCCcE-EEEEEeeC
Q 020776 153 PSVGKAAIGGPFKLI-NHDGKNVTEKDF-LGKWTVIYFG-FTHCPDICPD-ELQKLAAAVDKIKENSGIDI-VPAFISVD 227 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~-d~~G~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~-elp~L~~l~~~~~~~~g~~v-~vV~IS~D 227 (321)
..+|+++| +|+++ +.+|++++|+++ +||++||+|| ++|||+ |.. |+|.|++++++|+++ ++ .+|+||.|
T Consensus 3 l~~G~~aP--~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~-C~~~e~p~l~~~~~~~~~~---gv~~vv~Is~d 76 (167)
T 2wfc_A 3 IKEGDKLP--AVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPG-SSKTHLPGYVEQAAAIHGK---GVDIIACMAVN 76 (167)
T ss_dssp CCTTCBCC--CCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHH-HHHTHHHHHHHTHHHHHHT---TCCEEEEEESS
T ss_pred CCCCCcCC--CcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHC---CCCEEEEEeCC
Confidence 56889998 99999 999999999998 9999999886 999997 999 999999999999876 57 78889964
Q ss_pred CCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 228 PERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+++.+++|+++++++ |+++ .|...+++++||+........+ .....|++||| ++|+|++.+.+.
T Consensus 77 ----~~~~~~~~~~~~~~~~~fp~l---~D~~~~~~~~~gv~~~~~~~~g---~~~~~p~t~lI-~~G~I~~~~~~~ 142 (167)
T 2wfc_A 77 ----DSFVMDAWGKAHGADDKVQML---ADPGGAFTKAVDMELDLSAVLG---NVRSKRYSLVI-EDGVVTKVNVEP 142 (167)
T ss_dssp ----CHHHHHHHHHHTTCTTTSEEE---ECTTSHHHHHTTCEECCHHHHS---SCEECCEEEEE-ETTEEEEEEECT
T ss_pred ----CHHHHHHHHHhcCCCcceEEE---ECCCCcHHHHcCCccccccccC---cccceEEEEEE-eCCEEEEEEecC
Confidence 578999999999998 9998 6677889999999765210000 01133669999 999999986443
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-24 Score=180.52 Aligned_cols=137 Identities=21% Similarity=0.193 Sum_probs=114.1
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHH-HHHHHh-hhcCCcEEEEEEeeCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAA-AVDKIK-ENSGIDIVPAFISVDPE 229 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~-l~~~~~-~~~g~~v~vV~IS~Dp~ 229 (321)
...+|+++| +|+++|.+|+.+++++++||++||+||++||++ |..++|.|++ ++++++ +. ++.+|+|++|.
T Consensus 6 ~l~~g~~~p--~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~-C~~~~~~l~~~l~~~~~~~~---~~~vv~v~~d~- 78 (159)
T 2ls5_A 6 IVRIGEMAP--DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGV-CRKEMPFIEKDIWLKHKDNA---DFALIGIDRDE- 78 (159)
Confidence 467888888 999999999999999999999999999999998 9999999999 999887 33 67888888873
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCce--EeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+.+.+++|.++++++|+.+ .|....+++.|++. ..|+ +||||++|+|++++.+ .+.++
T Consensus 79 --~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~P~--------------~~lid~~G~i~~~~~g-~~~~~ 138 (159)
T 2ls5_A 79 --PLEKVLAFAKSTGVTYPLG---LDPGADIFAKYALRDAGITR--------------NVLIDREGKIVKLTRL-YNEEE 138 (159)
Confidence 4577899999999999988 67778899999954 3665 9999999999998755 45555
Q ss_pred HHHHHHHH
Q 020776 308 LADGIIKE 315 (321)
Q Consensus 308 l~~~l~~~ 315 (321)
+.+.|.++
T Consensus 139 l~~~l~~l 146 (159)
T 2ls5_A 139 FASLVQQI 146 (159)
Confidence 54444443
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=182.81 Aligned_cols=147 Identities=15% Similarity=0.195 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCC-eEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGK-WTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK-~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
+.+|+++| +|++++.+| ++++++++|| |+||+|| ++|||. |..|++.|++++++|+++ ++.+|+||+|+
T Consensus 3 l~iG~~aP--dF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpv-C~~el~~l~~l~~ef~~~---~v~vigIS~D~-- 73 (233)
T 2v2g_A 3 ITLGEVFP--NFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPV-STTELGRVIQLEGDFKKR---GVKLIALSCDN-- 73 (233)
T ss_dssp CCTTCBCC--CCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHH-HHHHHHHHHHTHHHHHHT---TEEEEEEESSC--
T ss_pred CCCCCCCC--CcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCC-cHHHHHHHHHHHHHHHHc---CCEEEEEcCCC--
Confidence 56899998 999999999 9999999998 9999998 999996 999999999999999876 68899999864
Q ss_pred CCHHHHHHHHH------Hh--CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 231 DTVEQVREYVK------EF--HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 231 Dt~e~l~~~~~------~~--~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
.+.+++|++ ++ +++|+++ .|...++++.||+....... +..+ ....|++||||++|+|++.+.+.
T Consensus 74 --~~~~~~~~~~i~~~~~~~~~~~fpil---~D~~~~va~~ygv~~~~~~~-~~g~-~~~~p~~fiID~~G~I~~~~~~~ 146 (233)
T 2v2g_A 74 --VADHKEWSEDVKCLSGVKGDMPYPII---ADETRELAVKLGMVDPDERT-STGM-PLTCRAVFIIGPDKKLKLSILYP 146 (233)
T ss_dssp --HHHHHHHHHHHHHHHTCCSSCSSCEE---ECTTCHHHHHTTCEEEEEEC-TTCC-EEECEEEEEECTTSBEEEEEEEC
T ss_pred --HHHHHHHHHHHHHhhCcccCCceEEE---ECChHHHHHHhCCcCccccc-CCCc-ccccceEEEECCCCEEEEEEecC
Confidence 577888888 56 7889988 56678899999997543211 1111 12468899999999999987443
Q ss_pred C----ChhHHHHHHHHH
Q 020776 303 N----DVNSLADGIIKE 315 (321)
Q Consensus 303 ~----~~~~l~~~l~~~ 315 (321)
. +.+++.+.|+.+
T Consensus 147 ~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 147 ATTGRNFSEILRVIDSL 163 (233)
T ss_dssp TTBCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 3 444454444443
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=176.93 Aligned_cols=135 Identities=16% Similarity=0.096 Sum_probs=111.0
Q ss_pred CCCCCCCCCCCCCeEEEcC--CC-Ceeeccc-cCCCeE-EEEEecCCCCCCcHH-HHHHHHHHHHHHhhhcCCcEE-EEE
Q 020776 151 QGPSVGKAAIGGPFKLINH--DG-KNVTEKD-FLGKWT-VIYFGFTHCPDICPD-ELQKLAAAVDKIKENSGIDIV-PAF 223 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~--~G-~~vsLsd-~kGK~v-LL~FwatwCp~vC~~-elp~L~~l~~~~~~~~g~~v~-vV~ 223 (321)
....+|+++| +|++++. +| ++++|++ ++||++ |++||++|||+ |.. |+|.|++++++|+++ ++. +|+
T Consensus 24 ~~l~vG~~aP--df~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~-C~~~e~p~l~~~~~~~~~~---gv~~vv~ 97 (184)
T 3uma_A 24 MTIAVGDKLP--NATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPT-CSLNHLPGYLENRDAILAR---GVDDIAV 97 (184)
T ss_dssp SCCCTTCBCC--CCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHH-HHHTHHHHHHHTHHHHHTT---TCCEEEE
T ss_pred CcCCCCCCCC--CcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCC-cCHHHHHHHHHHHHHHHHc---CCCEEEE
Confidence 3478999999 9999998 99 9999999 899965 55567999997 999 899999999999877 455 788
Q ss_pred EeeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 224 ISVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 224 IS~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
||.| +++.+++|+++++++ |+++ .|...+++++||+...+...+ +.+...|.+|||| +|+|++.+.+
T Consensus 98 Is~d----~~~~~~~f~~~~~~~~~fp~l---~D~~~~va~~yGv~~~~~~~g---~g~~~~r~tfiId-dG~I~~~~~~ 166 (184)
T 3uma_A 98 VAVN----DLHVMGAWATHSGGMGKIHFL---SDWNAAFTKAIGMEIDLSAGT---LGIRSKRYSMLVE-DGVVKALNIE 166 (184)
T ss_dssp EESS----CHHHHHHHHHHHTCTTTSEEE---ECTTCHHHHHTTCEEEEGGGT---CEEEECCEEEEEE-TTEEEEEEEC
T ss_pred EECC----CHHHHHHHHHHhCCCCceEEE---EcCchHHHHHcCCceeccccC---CcccceeEEEEEC-CCEEEEEEEe
Confidence 8864 578999999999998 9999 677789999999987653111 1223457799997 9999998754
Q ss_pred C
Q 020776 302 N 302 (321)
Q Consensus 302 ~ 302 (321)
.
T Consensus 167 ~ 167 (184)
T 3uma_A 167 E 167 (184)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=177.61 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=122.0
Q ss_pred CCCCCCCCCCCCeEEE---cCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 152 GPSVGKAAIGGPFKLI---NHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~---d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
...||++|| +|+++ |.++++++|+||+||++||+|| +.|||. |..|++.+++.+++|++. ++++|+||+
T Consensus 22 ~~~VG~~AP--dF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~Tpv-Ct~E~~~f~~~~~~f~~~---g~~vigiS~- 94 (216)
T 3sbc_A 22 VAQVQKQAP--TFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFV-SPTEIIAFSEAAKKFEEQ---GAQVLFAST- 94 (216)
T ss_dssp CCCTTSBCC--CCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHHHHHHHHT---TEEEEEEES-
T ss_pred hhhcCCcCC--CCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCc-CchhhhHHHHhHHhhccC---CceEEEeec-
Confidence 368999999 99976 6677899999999999999999 899995 999999999999999987 789999996
Q ss_pred CCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
|++...++|.+.. +++|+.+ .|..++++++||+..... -...+.+||||++|+|++...
T Consensus 95 ---Ds~~sh~aw~~~~~~~~~~~~l~fpll---sD~~~~vak~YGv~~~~~--------g~~~R~tFiID~~G~Ir~~~v 160 (216)
T 3sbc_A 95 ---DSEYSLLAWTNIPRKEGGLGPINIPLL---ADTNHSLSRDYGVLIEEE--------GVALRGLFIIDPKGVIRHITI 160 (216)
T ss_dssp ---SCHHHHHHHHTSCGGGTCCCSCSSCEE---ECTTSHHHHHHTCEETTT--------TEECEEEEEECTTSBEEEEEE
T ss_pred ---CchhhHHHHHHHHHHhCCccCcccceE---eCCCCHHHHHcCCeeccC--------CceeeEEEEECCCCeEEEEEE
Confidence 4578889998765 4788888 788899999999975321 123478999999999998865
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q 020776 301 KNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 301 ~~~~~~~l~~~l~~~L~~~k 320 (321)
.+.......+++++.|++++
T Consensus 161 ~~~~~grn~dEiLr~l~AlQ 180 (216)
T 3sbc_A 161 NDLPVGRNVDEALRLVEAFQ 180 (216)
T ss_dssp ECTTBCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhh
Confidence 55555556667777776664
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-23 Score=173.98 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=114.9
Q ss_pred EEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC--CCCCHHHHHHHHHH
Q 020776 165 KLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--ERDTVEQVREYVKE 242 (321)
Q Consensus 165 ~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--~~Dt~e~l~~~~~~ 242 (321)
+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|. ..++.+.+++|.++
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~-C~~~~~~l~~l~~~~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~ 97 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWASWCPL-CLSELGQAEKWAQDAKFS---SANLITVASPGFLHEKKDGEFQKWYAG 97 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCTTCHH-HHHHHHHHHHHHTCGGGT---TSEEEEEECTTSTTCCCTTHHHHHHTT
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcccC---CcEEEEEEcCCCccccCHHHHHHHHHh
Confidence 7889999999999999999999999999998 999999999999999876 57778888863 34677889999988
Q ss_pred hCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 243 FHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 243 ~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
++++ +++. .|....+++.|++..+|+ +||||++|++++.+.+..+.+++.+.|.++++++
T Consensus 98 ~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~ 158 (164)
T 2h30_A 98 LNYPKLPVV---TDNGGTIAQNLNISVYPS--------------WALIGKDGDVQRIVKGSINEAQALALIRNPNADL 158 (164)
T ss_dssp SCCTTSCEE---ECTTCHHHHHTTCCSSSE--------------EEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred CCCCcceEE---EcCchHHHHHcCCCccce--------------EEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 8877 6665 455677899999988887 9999999999999888888888888887776543
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-22 Score=178.47 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=114.6
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCC-e-EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGK-W-TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK-~-vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
...+|+++| +|++.+.+| ++++++++|| | ||++||++|||. |..|++.|++++++|+++ ++.+|+||+|+
T Consensus 4 ~l~~G~~aP--~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~-C~~el~~l~~l~~~f~~~---~v~vi~IS~D~- 75 (224)
T 1prx_A 4 GLLLGDVAP--NFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPV-CTTELGRAAKLAPEFAKR---NVKLIALSIDS- 75 (224)
T ss_dssp -CCTTCBCC--CCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHH-HHHHHHHHHHHHHHHHTT---TEEEEEEESSC-
T ss_pred cCCCcCCCC--CcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCC-cHHHHHHHHHHHHHHHHC---CCEEEEEcCCC-
Confidence 467899998 999999999 9999999998 5 555679999996 999999999999999876 68899999864
Q ss_pred CCCHHHHHHHHHH----------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 230 RDTVEQVREYVKE----------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 230 ~Dt~e~l~~~~~~----------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
.+.+++|++. ++++|+++ .|...++++.||+...... ....+ ..+.|++||||++|+|++.+
T Consensus 76 ---~~~~~~~~~~i~~~~~~~~~~~~~fpil---~D~~~~va~~ygv~~~~~~-~~~g~-~~~~p~~fiID~~G~I~~~~ 147 (224)
T 1prx_A 76 ---VEDHLAWSKDINAYNSEEPTEKLPFPII---DDRNRELAILLGMLDPAEK-DEKGM-PVTARVVFVFGPDKKLKLSI 147 (224)
T ss_dssp ---HHHHHHHHHHHHHHTTSCCCSCCSSCEE---ECTTCHHHHHTTSSCSCTT-CSSSC-CTTCCEEEEECTTSBEEEEE
T ss_pred ---HHHHHHHHHHHHHhhCcccccCcCccee---ecCchHHHHHhCCCCcccc-cCCCc-cccceEEEEECCCCEEEEEE
Confidence 5677788876 78899988 5667889999998653211 11111 23568899999999999987
Q ss_pred CCCC----ChhHHHHHHHHHH
Q 020776 300 GKNN----DVNSLADGIIKEI 316 (321)
Q Consensus 300 ~~~~----~~~~l~~~l~~~L 316 (321)
.+.. +.+++.+.|+.+.
T Consensus 148 ~~~~~~gr~~~eil~~i~~l~ 168 (224)
T 1prx_A 148 LYPATTGRNFDEILRVVISLQ 168 (224)
T ss_dssp ECCTTBCCCHHHHHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHH
Confidence 5433 4455555554443
|
| >3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=175.11 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=121.3
Q ss_pred CCCCCCCCCCCCeEE----EcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 152 GPSVGKAAIGGPFKL----INHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l----~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
...||++|| +|++ .|.+|++|+|+||+||||||+|| ..|||. |..|+..+++.+++|++. ++.+|+||+
T Consensus 25 ~~~vG~~AP--dF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~Tpv-Ct~E~~~f~~~~~eF~~~---g~~vigiS~ 98 (219)
T 3tue_A 25 NAKINSPAP--SFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-CPTEVIAFSDSVSRFNEL---NCEVLACSI 98 (219)
T ss_dssp CCCTTSBCC--CCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSS-CCHHHHHHHTTHHHHHTT---TEEEEEEES
T ss_pred ccccCCcCC--CCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCC-CchhHhhHHHHHhhhccC---CcEEEEeeC
Confidence 468999999 9994 47788999999999999999999 788995 999999999999999876 799999996
Q ss_pred CCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
| ++...++|.++. +++|+.+ .|..++++++||+..... ....+.+||||++|+|++.+
T Consensus 99 D----s~~sh~~w~~~~~~~~~~~~l~fpll---sD~~~~va~~yGv~~~~~--------g~~~R~tFiIDp~g~Ir~~~ 163 (219)
T 3tue_A 99 D----SEYAHLQWTLQDRKKGGLGTMAIPIL---ADKTKNIARSYGVLEESQ--------GVAYRGLFIIDPHGMLRQIT 163 (219)
T ss_dssp S----CHHHHHHHHHSCGGGTCCCSCSSCEE---ECTTSHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEEE
T ss_pred C----chhhHHHHhhhhHHhcCccccccccc---cCcccHHHHHcCCcccCC--------CeeEEEEEEECCCCeEEEEE
Confidence 4 578999998764 4788888 788899999999975322 12347799999999999886
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 020776 300 GKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 300 ~~~~~~~~l~~~l~~~L~~~k 320 (321)
..........+++++.|++++
T Consensus 164 ~~~~~~gr~~~EvLr~l~aLQ 184 (219)
T 3tue_A 164 VNDMPVGRSVEEVLRLLEAFQ 184 (219)
T ss_dssp EECTTCCCCHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHhh
Confidence 555555555666667666654
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-22 Score=177.30 Aligned_cols=147 Identities=12% Similarity=0.172 Sum_probs=112.5
Q ss_pred CCCCCCCCCCCeEEEcC--CCCeeeccccCCC-eEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 153 PSVGKAAIGGPFKLINH--DGKNVTEKDFLGK-WTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~--~G~~vsLsd~kGK-~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
+.+|+++| +|++.+. +| ++++++++|| |+|| +||++|||. |..|++.|++++++|+++ ++.+|+||+|+
T Consensus 3 l~iG~~aP--~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~-C~~el~~l~~l~~~f~~~---~v~vi~vS~D~ 75 (220)
T 1xcc_A 3 YHLGATFP--NFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPV-CTTELAELGKMHEDFLKL---NCKLIGFSCNS 75 (220)
T ss_dssp CCTTCBCC--CCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHH-HHHHHHHHHHTHHHHHTT---TEEEEEEESSC
T ss_pred CCCCCCCC--CcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHc---CCEEEEEeCCC
Confidence 56899998 9999999 99 9999999998 6555 569999996 999999999999999876 68899999874
Q ss_pred CCCCHHHHHHHHH-------HhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 229 ERDTVEQVREYVK-------EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 229 ~~Dt~e~l~~~~~-------~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
.+..++|.+ .++++|+++ .|...++++.||+....... +..+ ....|++||||++|+|++.+.+
T Consensus 76 ----~~~~~~~~~~i~~~~~~~~~~fpil---~D~~~~va~~ygv~~~~~~~-~~g~-~~~~p~~flID~~G~I~~~~~~ 146 (220)
T 1xcc_A 76 ----KESHDKWIEDIKYYGKLNKWEIPIV---CDESRELANKLKIMDEQEKD-ITGL-PLTCRCLFFISPEKKIKATVLY 146 (220)
T ss_dssp ----HHHHHHHHHHHHHHHTCSCCCCCEE---ECTTSHHHHHHTCEEEEEEC-TTSC-EEECEEEEEECTTSBEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHhcCCCCcceeE---ECchhHHHHHhCCCCccccc-CCCC-CcccceEEEECCCCEEEEEEec
Confidence 456666766 467889988 56678899999997543211 1111 1246889999999999998744
Q ss_pred C----CChhHHHHHHHHH
Q 020776 302 N----NDVNSLADGIIKE 315 (321)
Q Consensus 302 ~----~~~~~l~~~l~~~ 315 (321)
. .+.+++...|+.+
T Consensus 147 ~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 147 PATTGRNAHEILRVLKSL 164 (220)
T ss_dssp CTTBCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 3 3455555555444
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=173.18 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=115.4
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcH-----HHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICP-----DELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~-----~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
....+.+|+++| +|+|+|.+|+.++|++++||++||+||++| ||. |. .+++.|+++ | + ++.+|
T Consensus 18 ~g~~l~vG~~AP--dFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~-C~~~~~~~El~~~~~~---~--~---gv~Vv 86 (224)
T 3keb_A 18 IGDFPRKGDYLP--SFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDE-HAGLLLLRETRRFLDS---W--P---HLKLI 86 (224)
T ss_dssp BSCCCCTTCBCC--CCEEEETTSCEEEGGGGTTCCEEEEECSCTTCST-TTSHHHHHHHHHHHTT---C--T---TSEEE
T ss_pred ecCcCCCCCCCC--CeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCC-CCCCccHHHHHHHHHH---c--C---CCEEE
Confidence 445688999999 999999999999999999999999999999 786 99 999988887 4 2 46788
Q ss_pred EEeeCCCCCCHHHHHHHHHHhCC-CceeecCChHH-HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 223 FISVDPERDTVEQVREYVKEFHP-KLIGLTGSPDE-IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 223 ~IS~Dp~~Dt~e~l~~~~~~~~~-~~~~l~~~~d~-~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+||. |+++.+++|++++++ +|+++ .|. ..+++++||+.....+ +.-.+.|.+||||++|+|++.+.
T Consensus 87 gIS~----Ds~~~~~~f~~~~gl~~fplL---sD~~~~~vak~yGv~~~~~~-----~~G~~~p~tfvID~dG~I~~~~~ 154 (224)
T 3keb_A 87 VITV----DSPSSLARARHEHGLPNIALL---STLRGRDFHKRYGVLITEYP-----LSGYTSPAIILADAANVVHYSER 154 (224)
T ss_dssp EEES----SCHHHHHHHHHHHCCTTCEEE---ESTTCTTHHHHTTCBCCSTT-----STTCBCCEEEEECTTCBEEEEEE
T ss_pred EEEC----CCHHHHHHHHHHcCCCCceEE---EcCCchHHHHHhCCcccccc-----ccCCccCEEEEEcCCCEEEEEEe
Confidence 8996 568999999999999 79999 565 4789999999763211 11134678999999999998753
Q ss_pred -----CCCChhHHHHHHHHHH
Q 020776 301 -----KNNDVNSLADGIIKEI 316 (321)
Q Consensus 301 -----~~~~~~~l~~~l~~~L 316 (321)
...+.+++.+.|.++.
T Consensus 155 ~~~~~~~pd~~evl~~L~~l~ 175 (224)
T 3keb_A 155 LANTRDFFDFDAIEKLLQEGE 175 (224)
T ss_dssp CSBTTCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHhh
Confidence 2345666666665554
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-22 Score=170.27 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=104.4
Q ss_pred cCCCCCCCCCCCCCeEEEcC----CC-----Ceeecccc-CCC-eEEEEEecCCCCCCcHHH-HHHHHHHHHHHhhhcCC
Q 020776 150 KQGPSVGKAAIGGPFKLINH----DG-----KNVTEKDF-LGK-WTVIYFGFTHCPDICPDE-LQKLAAAVDKIKENSGI 217 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~----~G-----~~vsLsd~-kGK-~vLL~FwatwCp~vC~~e-lp~L~~l~~~~~~~~g~ 217 (321)
..+..+|+++| +|++++. +| ++++|+++ +|| +||++||++|||+ |..| +|.|++++++|+++
T Consensus 4 ~~g~~~g~~aP--~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~-C~~eh~p~l~~~~~~~~~~--- 77 (171)
T 2pwj_A 4 ATGTDILSAAS--NVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGV-CSSKHVPPYKHNIDKFKAK--- 77 (171)
T ss_dssp ------CCCSS--SBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTT-HHHHTHHHHHHTHHHHHHT---
T ss_pred cccccccCcCC--CeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCC-CCHHHHHHHHHHHHHHHHC---
Confidence 34667788988 9999998 57 89999996 997 5677899999998 9999 99999999999876
Q ss_pred cEE-EEEEeeCCCCCCHHHHHHHHHHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCe
Q 020776 218 DIV-PAFISVDPERDTVEQVREYVKEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKME 294 (321)
Q Consensus 218 ~v~-vV~IS~Dp~~Dt~e~l~~~~~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~ 294 (321)
++. +|+||.| +++.+++|++++++ +|+++ .|...+++++||+...+... ...+...+.+|+|| +|+
T Consensus 78 g~~~vv~Is~d----~~~~~~~~~~~~~~~~~fp~l---~D~~~~~~~~ygv~~~~~~~---~~g~~~~~~t~~I~-~G~ 146 (171)
T 2pwj_A 78 GVDSVICVAIN----DPYTVNAWAEKIQAKDAIEFY---GDFDGSFHKSLELTTDLSAG---LLGIRSERWSAYVV-DGK 146 (171)
T ss_dssp TCSEEEEEESS----CHHHHHHHHHHTTCTTTSEEE---ECTTCHHHHHHTCEEECTTT---TCCEEECCEEEEEE-TTE
T ss_pred CCCEEEEEeCC----CHHHHHHHHHHhCCCCceEEE---ECCccHHHHHhCCccccccc---cCCcccceeEEEEE-CCE
Confidence 455 7888865 46899999999995 79988 67778899999998543210 01122345688899 999
Q ss_pred EEEEeCCC
Q 020776 295 FVKFFGKN 302 (321)
Q Consensus 295 Iv~~~~~~ 302 (321)
|++.+.+.
T Consensus 147 I~~~~~~~ 154 (171)
T 2pwj_A 147 VKALNVEE 154 (171)
T ss_dssp EEEEEECS
T ss_pred EEEEEeec
Confidence 99987553
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-23 Score=169.50 Aligned_cols=121 Identities=17% Similarity=0.323 Sum_probs=106.5
Q ss_pred CCeEEEcCCCCeeeccc-cCCC-eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKD-FLGK-WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd-~kGK-~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
|+|++++.+|+.+++++ ++|| ++||+||++||++ |..++|.|++++++++++ +.++.+++|++| ++.+.+++|
T Consensus 5 p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~-C~~~~~~l~~~~~~~~~~-~~~~~v~~v~~d---~~~~~~~~~ 79 (143)
T 2lus_A 5 QGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP-CRGFTPILADMYSELVDD-SAPFEIIFVSSD---RSEDDMFQY 79 (143)
Confidence 49999999999999999 9999 9999999999998 999999999999999643 336888889987 346789999
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+++++++|+.+....+....+++.|++...|+ ++|||++|+|+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 80 MMESHGDWLAIPYRSGPASNVTAKYGITGIPA--------------LVIVKKDGTLISMNGR 127 (143)
Confidence 99999999887766777788999999998887 9999999999998633
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=160.27 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=103.7
Q ss_pred CCCCCCCCC-eEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 155 VGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 155 vG~~aP~p~-f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
+|+.+| + |++++.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ .++.+|+|++| ++.
T Consensus 3 ~~~~~P--~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~--~~~~vv~v~~d---~~~ 74 (144)
T 1i5g_A 3 LKKFFP--YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEK--KNFEVMLISWD---ESA 74 (144)
T ss_dssp TTTSCS--SCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECC---SSH
T ss_pred hhhhCC--CceEEEcCCCCEecHHHcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhccC--CCEEEEEEeCC---CCH
Confidence 566777 8 99999999999999999999999999999997 999999999999999852 26889999987 457
Q ss_pred HHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEc-CCCeEEEEe
Q 020776 234 EQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMS-PKMEFVKFF 299 (321)
Q Consensus 234 e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID-~dG~Iv~~~ 299 (321)
+.+++|+++++. +++++ ..|....+++.|++..+|+ ++||| ++|+|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~v~~~P~--------------~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 75 EDFKDYYAKMPWLALPFE--DRKGMEFLTTGFDVKSIPT--------------LVGVEADSGNIITTQ 126 (144)
T ss_dssp HHHHHHHTTCSSEECCTT--CHHHHHHHHHHTTCCSSSE--------------EEEEETTTCCEEESC
T ss_pred HHHHHHHHhCCccccccC--chHHHHHHHHHcCCCCCCE--------------EEEEECCCCcEEecc
Confidence 899999999863 33333 2466788999999988887 99999 999999875
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-21 Score=172.59 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=110.2
Q ss_pred CCCCCCCCCCCeEEEcC-CCC--eeeccc-cCCCeEEEEEe-cCCCCCCcH-HHHHHHHHHHHHHhhhcCCcE-EEEEEe
Q 020776 153 PSVGKAAIGGPFKLINH-DGK--NVTEKD-FLGKWTVIYFG-FTHCPDICP-DELQKLAAAVDKIKENSGIDI-VPAFIS 225 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~-~G~--~vsLsd-~kGK~vLL~Fw-atwCp~vC~-~elp~L~~l~~~~~~~~g~~v-~vV~IS 225 (321)
..+|+++| +|++++. +|+ +++|++ ++||++||+|| ++|||+ |. .|+|.|++++++|+++ ++ .+|+||
T Consensus 3 ~~~G~~aP--~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~-C~~~e~~~l~~~~~~~~~~---~~~~vv~is 76 (241)
T 1nm3_A 3 SMEGKKVP--QVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPT-CSSSHLPRYNELAPVFKKY---GVDDILVVS 76 (241)
T ss_dssp CCTTSBCC--CCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHH-HHHTHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred ccCCCCCC--CeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHC---CCCEEEEEE
Confidence 56888998 9999996 787 999999 89999999999 999997 99 9999999999999876 57 788999
Q ss_pred eCCCCCCHHHHHHHHHHhCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 226 VDPERDTVEQVREYVKEFHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 226 ~Dp~~Dt~e~l~~~~~~~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
.| +++.+++|+++++.+ |+++ .|...+++++||+...+...+ ......|++||| ++|+|++.+.+.
T Consensus 77 ~d----~~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~g---~~~~~~p~t~li-~~G~i~~~~~~~ 143 (241)
T 1nm3_A 77 VN----DTFVMNAWKEDEKSENISFI---PDGNGEFTEGMGMLVGKEDLG---FGKRSWRYSMLV-KNGVVEKMFIEP 143 (241)
T ss_dssp SS----CHHHHHHHHHHTTCTTSEEE---ECTTSHHHHHTTCEEECTTTT---CCEEECCEEEEE-ETTEEEEEEECC
T ss_pred cC----CHHHHHHHHHhcCCCceEEE---ECCCcHHHHHhCceeeccccc---CcccceeEEEEE-ECCEEEEEEEec
Confidence 75 478999999999986 9988 667788999999986542100 011234679999 999999987554
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=157.38 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=103.0
Q ss_pred CCCCCCCCCC-eEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 154 SVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 154 ~vG~~aP~p~-f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
.+|+.+| + |+++|.+| .+++++++||++||+||++||++ |..++|.|++++++|+++ .++.+++|++| ++
T Consensus 3 ~~~~~~P--~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~~~vv~v~~d---~~ 73 (146)
T 1o8x_A 3 GLDKYLP--GIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHES--KNFEVVFCTWD---EE 73 (146)
T ss_dssp CGGGTST--TCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECC---CS
T ss_pred chHhhCC--CceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHH-HHHHHHHHHHHHHHhhhc--CCeEEEEEeCC---CC
Confidence 3566777 8 99999999 99999999999999999999998 999999999999999842 26889999987 45
Q ss_pred HHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEc-CCCeEEEEe
Q 020776 233 VEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMS-PKMEFVKFF 299 (321)
Q Consensus 233 ~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID-~dG~Iv~~~ 299 (321)
.+.+++|+++++. ++++. ..|....+++.|++..+|+ ++||| ++|+|+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~v~~~Pt--------------~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 74 EDGFAGYFAKMPWLAVPFA--QSEAVQKLSKHFNVESIPT--------------LIGVDADSGDVVTTR 126 (146)
T ss_dssp HHHHHHHHTTCSSEECCGG--GHHHHHHHHHHTTCCSSSE--------------EEEEETTTCCEEESC
T ss_pred HHHHHHHHHHCCceeeccc--hhhHHHHHHHHhCCCCCCE--------------EEEEECCCCeEEEec
Confidence 7899999999863 33333 2366788999999988887 99999 999999875
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=174.46 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeec-ccc--CCCeE-EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTE-KDF--LGKWT-VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsL-sd~--kGK~v-LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.+.+|+++| +|++.+.+| ++++ +++ +|||+ |++||++||+. |..+++.|++++++|+++ ++.+|+||+|
T Consensus 4 ~~~iG~~aP--dF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~Cpv-C~tEl~~l~~l~~ef~~~---gv~VI~VS~D 76 (249)
T 3a2v_A 4 IPLIGERFP--EMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPV-CTTEFVSFARRYEDFQRL---GVDLIGLSVD 76 (249)
T ss_dssp ECCTTSBCC--CEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHH-HHHHHHHHHHTHHHHHHT---TEEEEEEESS
T ss_pred cCCCCCCCC--CeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcC-hHHHHHHHHHHHHHHHhC---CcEEEEEECC
Confidence 357899999 999999999 7999 999 99975 45789999996 999999999999999876 6899999986
Q ss_pred CCCCCHHHHHHHHHH------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 228 PERDTVEQVREYVKE------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+ .+...+|.+. .+++|+++ .|...++++.||+..... .+.+.|++||||++|+|++.+.+
T Consensus 77 s----~~~~~~w~~~~~~~~~~~i~fPil---~D~~~~ia~~ygv~~~~~-------g~~~~p~~fIID~dG~I~~~~~~ 142 (249)
T 3a2v_A 77 S----VFSHIKWKEWIERHIGVRIPFPII---ADPQGTVARRLGLLHAES-------ATHTVRGVFIVDARGVIRTMLYY 142 (249)
T ss_dssp C----HHHHHHHHHHHHHHTCCCCCSCEE---ECTTSHHHHHHTCCCTTC-------SSSCCEEEEEECTTSBEEEEEEE
T ss_pred C----HHHHHHHHHHHHHhcCCCCceeEE---ECCchHHHHHhCCccccC-------CCcccceEEEECCCCeEEEEEec
Confidence 4 4555666554 36888888 677788999999863111 12355779999999999998655
Q ss_pred CC----ChhHHHHHHHHH
Q 020776 302 NN----DVNSLADGIIKE 315 (321)
Q Consensus 302 ~~----~~~~l~~~l~~~ 315 (321)
.. +.+++...|..+
T Consensus 143 ~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 143 PMELGRLVDEILRIVKAL 160 (249)
T ss_dssp CTTBCCCHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHH
Confidence 44 445555544443
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=163.89 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCe-EEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPF-KLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f-~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...||+++| +| ++++.+| .+++++++||+|||+||++||++ |..++|.|++++++|+++ .++.+|+|++|
T Consensus 21 ~~~vG~~~P--~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~--~~v~vv~v~~d--- 91 (165)
T 3s9f_A 21 MSGVAKHLG--EALKLRKQAD-TADMDSLSGKTVFFYFSASWCPP-CRGFTPQLVEFYEKHHDS--KNFEIILASWD--- 91 (165)
T ss_dssp -CHHHHHHH--HTSCEEETTE-EECSGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECC---
T ss_pred hhhhcccCC--cceeeecCCC-cccHHHcCCCEEEEEEECCcChh-HHHHHHHHHHHHHHhccC--CCeEEEEEecC---
Confidence 345777888 98 9999999 99999999999999999999998 999999999999999863 26889999998
Q ss_pred CCHHHHHHHHHHhCCCceeecC-ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEe
Q 020776 231 DTVEQVREYVKEFHPKLIGLTG-SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFF 299 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~-~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~ 299 (321)
++.+.+++|+++++. ..+.. ..+....+++.|++..+|+ +||||++ |+|+++.
T Consensus 92 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~Pt--------------~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 92 EEEDDFNAYYAKMPW--LSIPFANRNIVEALTKKYSVESIPT--------------LIGLNADTGDTVTTR 146 (165)
T ss_dssp CSHHHHHHHHTTCSS--EECCTTCHHHHHHHHHHTTCCSSSE--------------EEEEETTTCCEEESC
T ss_pred CCHHHHHHHHHhCCC--cccccCchhHHHHHHHHcCCCCCCE--------------EEEEeCCCCEEEecc
Confidence 457899999998753 22222 2444588999999998887 9999998 9999875
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=153.99 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=101.9
Q ss_pred CCCCCCCCCCe-EEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 154 SVGKAAIGGPF-KLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 154 ~vG~~aP~p~f-~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
.+|+.+| +| +++|.+| .+++++++||++||+||++||++ |..++|.|++++++++++ .++.+++|++|. +
T Consensus 3 ~~g~~~p--~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~--~~~~vv~i~~d~---~ 73 (144)
T 1o73_A 3 GLAKYLP--GATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHVA--KNFEVVLISWDE---N 73 (144)
T ss_dssp GGGGTSC--TTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECCS---S
T ss_pred chhhhCc--cceEeecCCC-cCcHHHhCCCEEEEEEECcCCHH-HHHHHHHHHHHHHHhccC--CCEEEEEEeCCC---C
Confidence 4677777 97 9999999 99999999999999999999998 999999999999999742 268889999883 5
Q ss_pred HHHHHHHHHHhCCCceeecC-ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEc-CCCeEEEEe
Q 020776 233 VEQVREYVKEFHPKLIGLTG-SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMS-PKMEFVKFF 299 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~-~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID-~dG~Iv~~~ 299 (321)
.+.+++|+++++ |..+.. ..+....+++.|++..+|+ ++||| ++|+|+++.
T Consensus 74 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~Pt--------------~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 74 ESDFHDYYGKMP--WLALPFDQRSTVSELGKTFGVESIPT--------------LITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHHHHHTTCS--SEECCTTCHHHHHHHHHHHTCCSSSE--------------EEEEETTTCCEEESC
T ss_pred HHHHHHHHHhCC--ceEeeccchhHHHHHHHHcCCCCCCE--------------EEEEECCCCeEEecc
Confidence 688999998875 222221 2366788999999998887 99999 899999875
|
| >4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=172.19 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=109.1
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|+|+|.+|++++|+||+||+|||+|| ..|||. |..|++.+++. . ..++.+|+||. |+++.+++|+
T Consensus 5 p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~-C~~e~~~~~~~----~---~~~~~v~gis~----D~~~~~~~f~ 72 (322)
T 4eo3_A 5 KHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSG-STREAVEFSRE----N---FEKAQVVGISR----DSVEALKRFK 72 (322)
T ss_dssp CCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHH-HHHHHHHHHHS----C---CTTEEEEEEES----CCHHHHHHHH
T ss_pred CCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCC-CHHHHHHHHHH----h---hCCCEEEEEeC----CCHHHHHHHH
Confidence 4999999999999999999999999999 567885 99999887641 1 23688899996 5689999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
++++++|+.+ .|..++++++|||...+. ..+++||||++|+|++.+ ...++..+.+++++.+++++
T Consensus 73 ~~~~l~fp~l---~D~~~~v~~~ygv~~~~~----------~~r~tfiId~~G~i~~~~-~~v~~~~h~~~~l~~~~~~~ 138 (322)
T 4eo3_A 73 EKNDLKVTLL---SDPEGILHEFFNVLENGK----------TVRSTFLIDRWGFVRKEW-RRVKVEGHVQEVKEALDRLI 138 (322)
T ss_dssp HHHTCCSEEE---ECTTCHHHHHTTCEETTE----------ECCEEEEECTTSBEEEEE-ESCCSTTHHHHHHHHHHHHH
T ss_pred HhhCCceEEE---EcCchHHHHhcCCCCCCc----------CccEEEEECCCCEEEEEE-eCCCccccHHHHHHHHhhhc
Confidence 9999999999 778889999999964321 235699999999999887 34667777777777777663
|
| >4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-18 Score=148.88 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCCCeEEEcCCC----------Ceeecccc-CCCeEE-EEEecCCCCCCcHH-HHHHHHHHHHHHhhhcCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDG----------KNVTEKDF-LGKWTV-IYFGFTHCPDICPD-ELQKLAAAVDKIKENSGI 217 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G----------~~vsLsd~-kGK~vL-L~FwatwCp~vC~~-elp~L~~l~~~~~~~~g~ 217 (321)
...++|++.| ++++....+ ++++|+++ +||++| ++||+.|||. |.. |++.+++.+++|+++
T Consensus 8 ~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~-Ct~~El~~f~~~~~ef~~~--- 81 (176)
T 4f82_A 8 HMIQVGDALP--DAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPT-CSAQHVPGYVEHAEQLRAA--- 81 (176)
T ss_dssp CCCCTTCBCC--CCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHH-HHHTHHHHHHHHHHHHHHT---
T ss_pred hhhhcCCcCC--ceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCC-CCHHHHHHHHHHHHHHHhC---
Confidence 3467999999 766654433 67999997 999764 5778999997 999 999999999999987
Q ss_pred cE-EEEEEeeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCe
Q 020776 218 DI-VPAFISVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKME 294 (321)
Q Consensus 218 ~v-~vV~IS~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~ 294 (321)
++ .+++||+| ++..+++|+++++++ |+++ .|...+++++||+.......+ +.+...+.+||| ++|+
T Consensus 82 g~d~VigIS~D----~~~~~~~f~~~~~l~~~f~lL---sD~~~~va~ayGv~~~~~~~G---~g~~s~R~tfII-~dG~ 150 (176)
T 4f82_A 82 GIDEIWCVSVN----DAFVMGAWGRDLHTAGKVRMM---ADGSAAFTHALGLTQDLSARG---MGIRSLRYAMVI-DGGV 150 (176)
T ss_dssp TCCEEEEEESS----CHHHHHHHHHHTTCTTTSEEE---ECTTCHHHHHHTCEEECGGGT---CCEEECCEEEEE-ETTE
T ss_pred CCCEEEEEeCC----CHHHHHHHHHHhCCCCCceEE---EcCchHHHHHhCCCccccccC---CCcccccEEEEE-cCCE
Confidence 56 77889964 689999999999988 9999 677889999999976432100 112245779999 9999
Q ss_pred EEEEeCCC
Q 020776 295 FVKFFGKN 302 (321)
Q Consensus 295 Iv~~~~~~ 302 (321)
|++.+...
T Consensus 151 I~~~~~~~ 158 (176)
T 4f82_A 151 VKTLAVEA 158 (176)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99987543
|
| >2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=142.30 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCCeEEEcCCC-Ceeeccc-cCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEE-EEEEee
Q 020776 151 QGPSVGKAAIGGPFKLINHDG-KNVTEKD-FLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIV-PAFISV 226 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G-~~vsLsd-~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~-vV~IS~ 226 (321)
....+|+++| +|++.+.++ ++++|++ ++||++||+|+ ..|||. |..|++.+++.+++|++. ++. +++||.
T Consensus 12 ~~~~vGd~aP--df~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~-Ct~e~~~f~~~~~ef~~~---gv~~VigIS~ 85 (171)
T 2xhf_A 12 SPIKVGDIIP--DVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPG-SNNHIPEYLSLYDKFKEE---GYHTIACIAV 85 (171)
T ss_dssp CCCCTTCBCC--CCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTT-TTSSHHHHHHTHHHHHHT---TCCEEEEEES
T ss_pred CcccCcCCCC--CeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC---CCCEEEEEeC
Confidence 3578999999 999995432 8999999 59999999988 578985 999999999999999877 563 788996
Q ss_pred CCCCCCHHHHHHHHHHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 227 DPERDTVEQVREYVKEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
|++..+++|+++++. +|+.+ .|...+++++||+.......+. .....+.+|||| +|+|++.+..
T Consensus 86 ----D~~~~~~~w~~~~~~~~~f~lL---SD~~~~~a~ayGv~~~~~~~g~---g~~~~R~tfvId-dG~V~~~~v~ 151 (171)
T 2xhf_A 86 ----NDPFVMAAWGKTVDPEHKIRML---ADMHGEFTRALGTELDSSKMLG---NNRSRRYAMLID-DNKIRSVSTE 151 (171)
T ss_dssp ----SCHHHHHHHHHHHCTTCCSEEE---ECTTSHHHHHHTCBCCCHHHHS---SCCBCCEEEEEE-TTEEEEEEET
T ss_pred ----CCHHHHHHHHHhcCCCCCeEEE---EeCCchHHHHhCCceeccccCC---CcceEEEEEEEe-CCEEEEEEEe
Confidence 568999999999998 89999 7788999999999753211000 123456799999 9999998754
|
| >1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=143.27 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=112.2
Q ss_pred CCCCCCCCCCeEEEc--C---------CC----Ceeeccc-cCCCeEEEEEe-cCCCCCCcH-HHHHHHHHHHHHH-hhh
Q 020776 154 SVGKAAIGGPFKLIN--H---------DG----KNVTEKD-FLGKWTVIYFG-FTHCPDICP-DELQKLAAAVDKI-KEN 214 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d--~---------~G----~~vsLsd-~kGK~vLL~Fw-atwCp~vC~-~elp~L~~l~~~~-~~~ 214 (321)
.+|+++| +|++.+ . +| +.+++++ ++||++||+|+ ..|||. |. .|++.+++.++++ ++.
T Consensus 2 ~vGd~aP--df~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~-Ct~~e~~~f~~~~~~f~~~~ 78 (182)
T 1xiy_A 2 KENDLIP--NVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPT-CSTKMIPGYEEEYDYFIKEN 78 (182)
T ss_dssp CTTCBCC--CCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHH-HHHTHHHHHHHTHHHHHTTS
T ss_pred CCCCCCC--CeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence 5799998 999998 4 67 7999998 69999988776 789995 99 9999999999999 876
Q ss_pred cCCcE-EEEEEeeCCCCCCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC
Q 020776 215 SGIDI-VPAFISVDPERDTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK 292 (321)
Q Consensus 215 ~g~~v-~vV~IS~Dp~~Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d 292 (321)
++ .+++||. |++..+++|.++++. +|+.+ .|..++++++||+.......+ ......+.+|||| +
T Consensus 79 ---g~~~V~gvS~----D~~~~~~~~~~~~~~~~f~lL---sD~~~~~a~~yGv~~~~~~~G---~g~~~~R~tfvId-d 144 (182)
T 1xiy_A 79 ---NFDDIYCITN----NDIYVLKSWFKSMDIKKIKYI---SDGNSSFTDSMNMLVDKSNFF---MGMRPWRFVAIVE-N 144 (182)
T ss_dssp ---CCSEEEEEES----SCHHHHHHHHHHTTCCSSEEE---ECTTSHHHHHTTCEEECGGGT---CCEEECCEEEEEE-T
T ss_pred ---CCcEEEEEeC----CCHHHHHHHHHHcCCCCceEE---EeCchHHHHHhCCceeccccC---CCCceEEEEEEEc-C
Confidence 45 3678896 568999999999998 69999 778899999999986442111 1122456799999 9
Q ss_pred CeEEEEeCCCCC---------hhHHHHHHHHHHHH
Q 020776 293 MEFVKFFGKNND---------VNSLADGIIKEIKQ 318 (321)
Q Consensus 293 G~Iv~~~~~~~~---------~~~l~~~l~~~L~~ 318 (321)
|+|++.+..... .....+++.+.|++
T Consensus 145 G~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~ 179 (182)
T 1xiy_A 145 NILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKN 179 (182)
T ss_dssp TEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred CEEEEEEEeCCcccccccCcccCCCHHHHHHHHHh
Confidence 999998643211 02445556666654
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=128.41 Aligned_cols=113 Identities=7% Similarity=0.051 Sum_probs=88.8
Q ss_pred cCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 168 NHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 168 d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
+..|+.+++++.+||++||+|| ++||++ |..+.|.| .++.+.+.. ++.++.|++|...
T Consensus 34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~-C~~~~p~l~~~~~~~~~~~~----~~~~v~vd~~~~~------------- 95 (154)
T 2ju5_A 34 ESYAEALEHSKQDHKPIGLFFTGSDWCMW-CIKMQDQILQSSEFKHFAGV----HLHMVEVDFPQKN------------- 95 (154)
T ss_dssp ECHHHHHHHHHHHCCCEEEEEECTTTCHH-HHHHHHHTTTSHHHHHHHHH----HCEEEEEECCSSC-------------
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCCCCHh-HHHHHHHHhcCHHHHHHhcC----cEEEEEecCcccc-------------
Confidence 4467888888889999999999 999998 99999999 777665543 4777777776432
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC--ChhHHHHHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN--DVNSLADGIIKEIK 317 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~--~~~~l~~~l~~~L~ 317 (321)
++.+. + .+...++++.|+|..+|+ ++|+|++|+++.++ |.. +.+++.+.|.++++
T Consensus 96 ~~~~~-~---~~~~~~l~~~~~v~~~Pt--------------~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 96 HQPEE-Q---RQKNQELKAQYKVTGFPE--------------LVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp CCCHH-H---HHHHHHHHHHTTCCSSSE--------------EEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred CCChh-h---HhhHHHHHHHcCCCCCCE--------------EEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 12222 1 466678899999998887 99999999999998 777 77778887777664
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-16 Score=128.76 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=88.4
Q ss_pred CCCCCCCCCCeE-EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFK-LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~-l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.++.++| +|. +.+.++....+++.+||++||+||++||++ |..+.+.+ .++.++++ ++.++.|++|..
T Consensus 5 ~~~~~~~--~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~~~~~~~l~~~~~-----~~~~~~vd~~~~ 76 (134)
T 2fwh_A 5 AQTQTHL--NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQKALA-----DTVLLQANVTAN 76 (134)
T ss_dssp -----CC--CCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHH-HHHHHHHTTTSHHHHHHTT-----TSEEEEEECTTC
T ss_pred cccccCC--CcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHH-HHHHHHHhcCCHHHHHHhc-----CcEEEEEeCCCC
Confidence 3455566 887 666677777788888999999999999998 99999988 88888774 366777776532
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE--EEeCCCCChhH
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV--KFFGKNNDVNS 307 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~~~~~~~~~~~ 307 (321)
.+....+++.|++...|+ ++++|++|+++ .++.|..+.++
T Consensus 77 ------------------------~~~~~~l~~~~~v~~~Pt--------------~~~~d~~G~~v~~~~~~G~~~~~~ 118 (134)
T 2fwh_A 77 ------------------------DAQDVALLKHLNVLGLPT--------------ILFFDGQGQEHPQARVTGFMDAET 118 (134)
T ss_dssp ------------------------CHHHHHHHHHTTCCSSSE--------------EEEECTTSCBCGGGCBCSCCCHHH
T ss_pred ------------------------cchHHHHHHHcCCCCCCE--------------EEEECCCCCEeeeeeeeeccCHHH
Confidence 245567889999998887 99999999998 67888888877
Q ss_pred HHHHHHH
Q 020776 308 LADGIIK 314 (321)
Q Consensus 308 l~~~l~~ 314 (321)
+.+.|.+
T Consensus 119 l~~~l~~ 125 (134)
T 2fwh_A 119 FSAHLRD 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666654
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=122.16 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=86.9
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
+.+.+|..+.+++++||++||+||++||++ |..+.|.|.++.+++.+ ++.++.|++|.+
T Consensus 36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~----~~~~~~v~~~~~---------------- 94 (141)
T 3hxs_A 36 IADYENHSKEWKYLGDKPAIVDFYADWCGP-CKMVAPILEELSKEYAG----KIYIYKVNVDKE---------------- 94 (141)
T ss_dssp TCCCSSCCCCCCCCCSSCEEEEEECTTCTT-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC----------------
T ss_pred hhccccchhHHHHhCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----ceEEEEEECCCC----------------
Confidence 456788889999999999999999999998 99999999999999874 377777776532
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
..+++.|+|..+|+ ++++|++|+++ .+.|..+.+++.+.|.++++
T Consensus 95 ------------~~~~~~~~v~~~Pt--------------~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 95 ------------PELARDFGIQSIPT--------------IWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp ------------HHHHHHTTCCSSSE--------------EEEECSSSCCE-EEESCCCHHHHHHHHHHTTC
T ss_pred ------------HHHHHHcCCCCcCE--------------EEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHc
Confidence 24678899988887 89999999998 56688888888888877664
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=121.88 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=87.2
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+++..+.+|........+||++||+||++||++ |..+.|.|.++++++++ ++.++.|++|
T Consensus 8 ~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~-C~~~~~~l~~~~~~~~~----~v~~~~v~~~--------------- 67 (126)
T 2l57_A 8 QINFQSINVVENLEEAKEGIPTIIMFKTDTCPY-CVEMQKELSYVSKEREG----KFNIYYARLE--------------- 67 (126)
T ss_dssp CTTTTCCSEESSTTTCCSSSCEEEEEECSSCHH-HHHHHHHHHHHHHHSSS----SCEEEEEETT---------------
T ss_pred CCCccccchhHHHHHHhCCCcEEEEEECCCCcc-HHHHHHHHHHHHHHhcC----CeEEEEEeCC---------------
Confidence 666666666665566678999999999999998 99999999999998862 4777878743
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
.|...++++.|++..+|+ ++++|++|+++..+.|..+.+++.+.|.+.+
T Consensus 68 -----------~d~~~~~~~~~~v~~~Pt--------------~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 68 -----------EEKNIDLAYKYDANIVPT--------------TVFLDKEGNKFYVHQGLMRKNNIETILNSLG 116 (126)
T ss_dssp -----------SSHHHHHHHHTTCCSSSE--------------EEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred -----------CCchHHHHHHcCCcceeE--------------EEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 122346788899988887 9999999999999888888888777776654
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-16 Score=133.58 Aligned_cols=126 Identities=12% Similarity=0.077 Sum_probs=84.3
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCcee
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~ 249 (321)
.+.++..+||+|||+||++||++ |+.+.+.+ .++.+.+++ ++.++.|++|...+.++... + ........
T Consensus 39 ~~~~a~~~gk~vlv~F~A~WC~~-C~~~~~~~~~~~~~~~~~~~----~~~~v~v~~d~~~~~~~~~~-~--~~~~~~~~ 110 (172)
T 3f9u_A 39 GMEYARQHNKPVMLDFTGYGCVN-CRKMELAVWTDPKVSSIINN----DYVLITLYVDNKTPLTEPVK-I--MENGTERT 110 (172)
T ss_dssp HHHHHHHTTCCEEEEEECTTCHH-HHHHHHHTTTSHHHHHHHHH----HCEEEEEETTCCCEEEEEEE-E--EETTEEEE
T ss_pred HHHHHHHcCCeEEEEEECCCCHH-HHHHHHHhcCCHHHHHHhcC----CEEEEEEecCcccccchhhh-h--hhcchhhh
Confidence 34455567999999999999998 99864444 556666654 37888888875421100000 0 00001111
Q ss_pred ecCChHHHHHH-HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC-hhHHHHHHHHHHHHHh
Q 020776 250 LTGSPDEIRNI-ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND-VNSLADGIIKEIKQYK 320 (321)
Q Consensus 250 l~~~~d~~~~~-a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~-~~~l~~~l~~~L~~~k 320 (321)
+....+....+ ++.|++..+|+ ++|+|++|+++..+.|..+ .+++.+.|.+.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Pt--------------~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~ 169 (172)
T 3f9u_A 111 LRTVGDKWSYLQRVKFGANAQPF--------------YVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYR 169 (172)
T ss_dssp EEEHHHHHHHHHHHHHSCCCSSE--------------EEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHcCCCCcce--------------EEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhh
Confidence 11112333334 58899999887 9999999999998878887 9999999999998876
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=114.01 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=83.1
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+++ +.+++.++....+||++||+||++||++ |+.+.|.+.++++++++ ++.++.|++|..
T Consensus 26 ~~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~----~v~~~~vd~d~~------------- 85 (128)
T 3ul3_B 26 RLQ--QNGSNIINGVNMKNTVIVLYFFAKWCQA-CTMQSTEMDKLQKYYGK----RIYLLKVDLDKN------------- 85 (128)
T ss_dssp CCC--CCCCSSSSBTTSCCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGG----GEEEEEEEGGGC-------------
T ss_pred ccc--cCCccHHHHHHccCCEEEEEEECCCCHH-HHHHhHHHHHHHHHhcC----CeEEEEEECCCC-------------
Confidence 554 5667778888889999999999999998 99999999999999974 488888886532
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
..++++|+|...|+ ++++ ++|+++.++.|..+.+++.+.|.
T Consensus 86 ---------------~~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 86 ---------------ESLARKFSVKSLPT--------------IILL-KNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp ---------------HHHHHHTTCCSSSE--------------EEEE-ETTEEEEEESSCCCHHHHHHHHT
T ss_pred ---------------HHHHHHcCCCCcCE--------------EEEE-ECCEEEEEecCCCCHHHHHHHHH
Confidence 35688899998887 7777 79999999988888877766654
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=113.27 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=91.7
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
.|.+.+ +..+.+.+++.+.....++|++||+||++||++ |..+.|.|+++.+++.+ ++.++.|++|.+
T Consensus 31 ~~~~~~--~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~----~~~~~~vd~~~~----- 98 (148)
T 3p2a_A 31 CGHSLF--DGEVINATAETLDKLLQDDLPMVIDFWAPWCGP-CRSFAPIFAETAAERAG----KVRFVKVNTEAE----- 98 (148)
T ss_dssp TCCBTT--CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC-----
T ss_pred cCCccc--cCCceecCHHHHHHHHhcCCcEEEEEECCCCHH-HHHHHHHHHHHHHHcCC----ceEEEEEECcCC-----
Confidence 344445 777888888877655567899999999999998 99999999999999864 377777776521
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.|+|...|+ ++++ ++|+++.++.|..+.+++.+.|.+
T Consensus 99 -----------------------~~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~ 140 (148)
T 3p2a_A 99 -----------------------PALSTRFRIRSIPT--------------IMLY-RNGKMIDMLNGAVPKAPFDNWLDE 140 (148)
T ss_dssp -----------------------HHHHHHTTCCSSSE--------------EEEE-ETTEEEEEESSCCCHHHHHHHHHH
T ss_pred -----------------------HHHHHHCCCCccCE--------------EEEE-ECCeEEEEEeCCCCHHHHHHHHHH
Confidence 34678899988886 5555 699999999899999999999988
Q ss_pred HHHH
Q 020776 315 EIKQ 318 (321)
Q Consensus 315 ~L~~ 318 (321)
++++
T Consensus 141 ~l~~ 144 (148)
T 3p2a_A 141 QLSR 144 (148)
T ss_dssp HHHS
T ss_pred Hhcc
Confidence 8864
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=110.96 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=72.2
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHH--HHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLA--AAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~--~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
....||++||+||++||++ |..+.|.|. ++.++++++ +.++.|+++. .
T Consensus 25 ~~~~~k~vlv~f~a~wC~~-C~~~~~~l~~~~~~~~~~~~----~~~~~vd~~~-------------------------~ 74 (133)
T 3fk8_A 25 GKRTHKPTLLVFGANWCTD-CRALDKSLRNQKNTALIAKH----FEVVKIDVGN-------------------------F 74 (133)
T ss_dssp HHHHTCCEEEEEECTTCHH-HHHHHHHHTSHHHHHHHHHH----CEEEEEECTT-------------------------T
T ss_pred HHhcCCcEEEEEcCCCCHH-HHHHHHHhCCHHHHHHhcCC----EEEEEEeCCc-------------------------c
Confidence 3356999999999999998 999999999 999998654 7777787642 1
Q ss_pred HHHHHHHHHcCc---eEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC-------CCChhHHHHHHHH
Q 020776 255 DEIRNIARAYRV---YYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK-------NNDVNSLADGIIK 314 (321)
Q Consensus 255 d~~~~~a~~ygv---~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~-------~~~~~~l~~~l~~ 314 (321)
+....+++.|++ ..+|+ ++++|++|+++..+.+ ..+.+++.+.|.+
T Consensus 75 ~~~~~l~~~~~v~~~~~~Pt--------------~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 75 DRNLELSQAYGDPIQDGIPA--------------VVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAK 130 (133)
T ss_dssp TSSHHHHHHTTCGGGGCSSE--------------EEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred cchHHHHHHhCCccCCccce--------------EEEECCCCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence 223457888998 88887 9999999999999766 3455544444433
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=111.18 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=78.3
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
+.+.+++.+||++||+||++||++ |..+.|.+ .++.+.++.+ +.++.|++|.
T Consensus 18 ~~~~~~~~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~~----~~~~~vd~~~-------------------- 72 (130)
T 2kuc_A 18 EALKRAEVEDKLLFVDCFTTWCGP-CKRLSKVVFKDSLVADYFNRH----FVNLKMDMEK-------------------- 72 (130)
T ss_dssp HHHHHHHHHSSCEEEEECCTTCTH-HHHHHHHGGGCHHHHHHHHHH----SEEEEECSSS--------------------
T ss_pred HHHHHHHhcCCeEEEEEECCCCcc-HHHHHHHhcCcHHHHHHHhcC----eEEEEEecCC--------------------
Confidence 345566668999999999999998 99999999 6666666543 5555555431
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+....+++.|++..+|+ ++++|++|+++..+.|..+.+++.+.|.+.+.
T Consensus 73 ------~~~~~~~~~~~v~~~Pt--------------~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~ 121 (130)
T 2kuc_A 73 ------GEGVELRKKYGVHAYPT--------------LLFINSSGEVVYRLVGAEDAPELLKKVKLGVE 121 (130)
T ss_dssp ------TTHHHHHHHTTCCSSCE--------------EEEECTTSCEEEEEESCCCHHHHHHHHHHHHS
T ss_pred ------cchHHHHHHcCCCCCCE--------------EEEECCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence 23356788999988887 99999999999998888888888887777654
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=105.17 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=67.9
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+++..+|+|||+||++||++ |....|.+.++.+++. ++.++.|++|.
T Consensus 15 l~~~~~k~vvv~F~a~wC~~-C~~~~p~~~~~~~~~~-----~~~~~~vd~d~--------------------------- 61 (105)
T 3zzx_A 15 LNEAGNKLVVIDFYATWCGP-CKMIAPKLEELSQSMS-----DVVFLKVDVDE--------------------------- 61 (105)
T ss_dssp HHHTTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TEEEEEEETTT---------------------------
T ss_pred HHhcCCCEEEEEEECCCCCC-ccCCCcchhhhhhccC-----CeEEEEEeccc---------------------------
Confidence 34456899999999999998 9999999999988775 46666666542
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
..++++.|+|...|+ +++.++|+++.++.| .+.++ |.+.++++
T Consensus 62 -~~~l~~~~~V~~~PT---------------~~~~~~G~~v~~~~G-~~~~~----l~~~i~k~ 104 (105)
T 3zzx_A 62 -CEDIAQDNQIACMPT---------------FLFMKNGQKLDSLSG-ANYDK----LLELVEKN 104 (105)
T ss_dssp -CHHHHHHTTCCBSSE---------------EEEEETTEEEEEEES-CCHHH----HHHHHHHH
T ss_pred -CHHHHHHcCCCeecE---------------EEEEECCEEEEEEeC-cCHHH----HHHHHHhc
Confidence 135688999999985 555589999999877 46554 44445444
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-13 Score=112.46 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=75.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |..+.|.|.++.+++++ .+.++.|++|.. .+
T Consensus 22 ~~k~vlv~F~a~WC~~-C~~~~p~l~~l~~~~~~----~~~~~~vd~d~~----------------------------~~ 68 (149)
T 3gix_A 22 AEKVLVLRFGRDEDPV-CLQLDDILSKTSSDLSK----MAAIYLVDVDQT----------------------------AV 68 (149)
T ss_dssp CSSEEEEEEECTTSHH-HHHHHHHHHHHHTTTTT----TEEEEEEETTTC----------------------------CH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHccC----ceEEEEEECCcC----------------------------HH
Confidence 5899999999999998 99999999999988864 377787876632 23
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE---------EEeCC-CCChhHHHHHHHHHHHHHh
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV---------KFFGK-NNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv---------~~~~~-~~~~~~l~~~l~~~L~~~k 320 (321)
+++.|+|...|+ ++++++|+++ .++.| ..+.+++.+.|.++++..+
T Consensus 69 l~~~~~v~~~Pt---------------~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 69 YTQYFDISYIPS---------------TVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp HHHHTTCCSSSE---------------EEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccCe---------------EEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 678899988885 4488999999 77777 7888888888888876543
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=103.85 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=78.0
Q ss_pred CCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 169 HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 169 ~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.+++.+...-.+++++||+||++||++ |....|.+.++.+++.+ ++.++.|++|..
T Consensus 9 l~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~v~~~~~------------------- 64 (109)
T 3tco_A 9 LTEENFDEVIRNNKLVLVDCWAEWCAP-CHLYEPIYKKVAEKYKG----KAVFGRLNVDEN------------------- 64 (109)
T ss_dssp CCTTTHHHHHHHSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTTC-------------------
T ss_pred ecHHHHHHHHhcCCeEEEEEECCCCHH-HHhhhHHHHHHHHHhCC----CceEEEEccccC-------------------
Confidence 344444432235899999999999998 99999999999999864 366677775521
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+++
T Consensus 65 ---------~~~~~~~~i~~~Pt--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 65 ---------QKIADKYSVLNIPT--------------TLIF-VNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp ---------HHHHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred ---------HHHHHhcCcccCCE--------------EEEE-cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 34678899988886 6777 99999999888888888888877765
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=104.37 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |..+.|.+.++.+++++ .+.++.|++|. ...
T Consensus 34 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~----------------------------~~~ 80 (130)
T 2dml_A 34 SDGLWLVEFYAPWCGH-CQRLTPEWKKAATALKD----VVKVGAVNADK----------------------------HQS 80 (130)
T ss_dssp CSSCEEEEEECTTCST-TGGGHHHHHHHHHHTTT----TSEEEEEETTT----------------------------CHH
T ss_pred CCCeEEEEEECCCCHH-HHhhCHHHHHHHHHhcC----ceEEEEEeCCC----------------------------CHH
Confidence 4789999999999998 99999999999998864 36666677552 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|+|...|+ +++++++|+++..+.+..+.+++.+.|.+.+++
T Consensus 81 l~~~~~v~~~Pt--------------~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~ 125 (130)
T 2dml_A 81 LGGQYGVQGFPT--------------IKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125 (130)
T ss_dssp HHHHHTCCSSSE--------------EEEESSCTTSCEECCSCCSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccCE--------------EEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhc
Confidence 678899988887 899999998667777888999999988888765
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-14 Score=114.41 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=82.0
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
.+.+.++..+||++||+||++||++ |..+.|.+ .++.+.+++ ++.++.|++|.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~----~~~~~~vd~~~------------------- 64 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPY-CQQMNTFVLSDPGVSRLLEA----RFVVASVSVDT------------------- 64 (130)
Confidence 6778888889999999999999998 99999999 888877754 36666666542
Q ss_pred eeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeE--EEEeCCCCChhHHHHHHHHHHHH
Q 020776 248 IGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEF--VKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 248 ~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~I--v~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+....+++.|+|..+|+ ++++|+ +|++ +.++.|..+.+++.+.|.+++++
T Consensus 65 -------~~~~~~~~~~~v~~~Pt--------------~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~ 117 (130)
T 2lst_A 65 -------PEGQELARRYRVPGTPT--------------FVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVK 117 (130)
Confidence 12245678899999887 899996 5999 88887888888888888887764
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=100.98 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=78.0
Q ss_pred cCCCCeeeccc-cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 168 NHDGKNVTEKD-FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 168 d~~G~~vsLsd-~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
..+++.+...- -.+|++||+||++||++ |....|.++++.+++.+ ++.++.|++|.+
T Consensus 6 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~v~~~~~----------------- 63 (108)
T 2trx_A 6 HLTDDSFDTDVLKADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG----KLTVAKLNIDQN----------------- 63 (108)
T ss_dssp ECCTTTHHHHTTTCSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TEEEEEEETTTC-----------------
T ss_pred ecchhhHHHHHHhcCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhCC----CcEEEEEECCCC-----------------
Confidence 34455544221 25799999999999998 99999999999998864 488888887632
Q ss_pred ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 247 LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 247 ~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..+++.|++...|+ ++++ ++|+++.++.|..+.+++.+.|.+++
T Consensus 64 -----------~~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 64 -----------PGTAPKYGIRGIPT--------------LLLF-KNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp -----------TTHHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHcCCcccCE--------------EEEE-eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 13577899988886 7777 89999998888888888888777765
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=106.31 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=70.3
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
++.++|++||+||++||++ |..+.|.|.++.+++. ++.++.|++|.
T Consensus 27 ~~~~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~-----~v~~~~vd~d~---------------------------- 72 (116)
T 3qfa_C 27 DAAGDKLVVVDFSATWCGP-SKMIKPFFHSLSEKYS-----NVIFLEVDVDD---------------------------- 72 (116)
T ss_dssp HHHTTSCEEEEEECTTCHH-HHHHHHHHHHHHTTCT-----TSEEEEEETTT----------------------------
T ss_pred HhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC-----CCEEEEEECCC----------------------------
Confidence 4447999999999999998 9999999999988774 26667777652
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
...+++.|+|...|+ ++++ ++|+++..+.|. +.+++.+.|.++
T Consensus 73 ~~~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 73 CQDVASECEVKSMPT--------------FQFF-KKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp THHHHHHTTCCSSSE--------------EEEE-SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred CHHHHHHcCCccccE--------------EEEE-eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 135688899998885 5555 899999988777 877777777654
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-13 Score=105.36 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=72.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|++||+||++||++ |..+.|.+.++++++++ ++.++.|++|.+ .+
T Consensus 16 ~~~~~lv~f~a~wC~~-C~~~~~~l~~~~~~~~~----~v~~~~vd~~~~----------------------------~~ 62 (112)
T 2voc_A 16 SEGVVLADFWAPWCGP-SKMIAPVLEELDQEMGD----KLKIVKIDVDEN----------------------------QE 62 (112)
T ss_dssp SSSEEEEEEECTTBGG-GGGHHHHHHHHHHHHTT----TCEEEEEETTTC----------------------------CS
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC----CcEEEEEECCCC----------------------------HH
Confidence 7899999999999998 99999999999999864 477788887642 13
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++++|++...|+ ++++ ++|+++..+.|..+.+++.+.+.+.
T Consensus 63 l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 103 (112)
T 2voc_A 63 TAGKYGVMSIPT--------------LLVL-KDGEVVETSVGFKPKEALQELVNKH 103 (112)
T ss_dssp HHHHTTCCSBSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred HHHHcCCCcccE--------------EEEE-eCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 577899988887 7788 9999999988888887777666544
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=106.99 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |..+.|.|.++.+++++ ++.++.|++|.+ ..
T Consensus 37 ~~k~~lv~f~a~wC~~-C~~~~~~l~~l~~~~~~----~v~~~~vd~~~~----------------------------~~ 83 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGP-CKMVAPILDELAKEYDG----QIVIYKVDTEKE----------------------------QE 83 (136)
T ss_dssp CSSCEEEEEECTTSHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhcC----CEEEEEEeCCCC----------------------------HH
Confidence 4689999999999998 99999999999998864 377777776531 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|++...|+ ++++|++|+++ .+.+..+.+++.+.|.+.+..
T Consensus 84 l~~~~~v~~~Pt--------------~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~ 127 (136)
T 2l5l_A 84 LAGAFGIRSIPS--------------ILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK 127 (136)
T ss_dssp HHHHTTCCSSCE--------------EEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred HHHHcCCCCCCE--------------EEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence 678899988887 89999999998 556788888888888777643
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=106.13 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=80.9
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
+.+.+++.+...-..+|++||+||++||++ |..+.|.|.++.++++++ +.++.++.|++|.
T Consensus 19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~-~~~v~~~~vd~~~----------------- 79 (140)
T 2dj1_A 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGH-CKQFAPEYEKIASTLKDN-DPPIAVAKIDATS----------------- 79 (140)
T ss_dssp EEECCTTTHHHHHTTCSEEEEEECCTTCHH-HHTTHHHHHHHHHHHHSS-SSCCEEEEECTTT-----------------
T ss_pred CEEcChHhHHHHHhcCCeEEEEEECCCCHH-HHHhhHHHHHHHHHHhcc-CCceEEEEEeCcc-----------------
Confidence 445566666543346899999999999998 999999999999999865 3456666665432
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++.|+|..+|+ ++++ ++|+ +..+.+..+.+++.+.|.+++.
T Consensus 80 -----------~~~~~~~~~v~~~Pt--------------~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~ 124 (140)
T 2dj1_A 80 -----------ASMLASKFDVSGYPT--------------IKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQ 124 (140)
T ss_dssp -----------CHHHHHHTTCCSSSE--------------EEEE-ETTE-EEECCSCCCHHHHHHHHHHHHS
T ss_pred -----------cHHHHHHCCCCccCe--------------EEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcC
Confidence 135678899988887 7777 7898 5667788888888888887764
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=101.87 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=72.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |..+.|.+.++.+++++ ++.++.|++|.+ .+
T Consensus 22 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~v~~~~~----------------------------~~ 68 (112)
T 1t00_A 22 NDKPVLVDFWAAWCGP-CRQIAPSLEAIAAEYGD----KIEIVKLNIDEN----------------------------PG 68 (112)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCeEEEEEECCCCHh-HHhcCHHHHHHHHHhcC----CeEEEEEEcCCC----------------------------HH
Confidence 4799999999999998 99999999999998864 377777776531 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.|++...|+ +++.++|+++..+.|..+.+++.+.|.++++
T Consensus 69 ~~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 69 TAAKYGVMSIPT---------------LNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp HHHHTTCCSSSE---------------EEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred HHHhCCCCcccE---------------EEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 678899988885 4445899999988888888888888877664
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=99.33 Aligned_cols=104 Identities=12% Similarity=0.164 Sum_probs=81.0
Q ss_pred EEcCCCCeeeccc-cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 166 LINHDGKNVTEKD-FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 166 l~d~~G~~vsLsd-~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
+.+.+++.+...- -.++++||+||++||++ |....|.+.++.+++.+ ++.++.|++|..
T Consensus 9 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~v~~~~v~~~~~--------------- 68 (115)
T 1thx_A 9 VITITDAEFESEVLKAEQPVLVYFWASWCGP-CQLMSPLINLAANTYSD----RLKVVKLEIDPN--------------- 68 (115)
T ss_dssp EEECCGGGHHHHTTTCSSCEEEEEECTTCTT-HHHHHHHHHHHHHHTTT----TCEEEEEESTTC---------------
T ss_pred eEEeeccchhhHhhcCCceEEEEEECCCCHH-HHHhHHHHHHHHHHhCC----cEEEEEEEcCCC---------------
Confidence 3445555554322 25899999999999998 99999999999998864 377777876631
Q ss_pred CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 245 PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 245 ~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
..+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+++.
T Consensus 69 -------------~~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 69 -------------PTTVKKYKVEGVPA--------------LRLV-KGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp -------------HHHHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred -------------HHHHHHcCCCceeE--------------EEEE-cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 24678899988886 7777 899999988888888888888887765
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=100.97 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=75.5
Q ss_pred cCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 168 NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 168 d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
+.+.+.+.-.- +++++||+||++||++ |....|.+.++.+++.++ +.++.|++|..
T Consensus 7 ~l~~~~~~~~~-~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~----~~~~~v~~~~~------------------ 62 (106)
T 3die_A 7 KVTDADFDSKV-ESGVQLVDFWATACGP-CKMIAPVLEELAADYEGK----ADILKLDVDEN------------------ 62 (106)
T ss_dssp ECCTTTHHHHS-CSSEEEEEEECSBCHH-HHHHHHHHHHHHHHTTTT----CEEEEEETTTC------------------
T ss_pred ECCHHHHHHHh-cCCcEEEEEECCCCHH-HHHHhHHHHHHHHHhcCC----cEEEEEECCcC------------------
Confidence 33444443222 7899999999999998 999999999999998743 77777776531
Q ss_pred eeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 248 IGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 248 ~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.++
T Consensus 63 ----------~~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 63 ----------PSTAAKYEVMSIPT--------------LIVF-KDGQPVDKVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp ----------HHHHHHTTCCSBSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred ----------HHHHHhCCCcccCE--------------EEEE-eCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 34678899988886 6666 5999999988888887777766543
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=107.10 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecC
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTG 252 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~ 252 (321)
.+..++.+||++||+||++||++ |..+.|.|+++.+++. ++.++.|++|..
T Consensus 38 ~~~~~~~~~k~vvv~f~a~wC~~-C~~~~~~l~~l~~~~~-----~v~~~~v~~~~~----------------------- 88 (139)
T 3d22_A 38 KLSEASRDGKIVLANFSARWCGP-SRQIAPYYIELSENYP-----SLMFLVIDVDEL----------------------- 88 (139)
T ss_dssp HHHHHHHHTCCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------
T ss_pred HHHHHhhcCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC-----CCEEEEEeCccc-----------------------
Confidence 34444457999999999999998 9999999999998873 366777776521
Q ss_pred ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 253 SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 253 ~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+++.|++...|+ ++++ ++|+++.++.|. +.+++.+.|.++++.
T Consensus 89 -----~~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 89 -----SDFSASWEIKATPT--------------FFFL-RDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp -----HHHHHHTTCCEESE--------------EEEE-ETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred -----HHHHHHcCCCcccE--------------EEEE-cCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 34688899999996 5555 999999988776 788888888877764
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.35 E-value=9.6e-13 Score=103.51 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=70.1
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
..+...-.++|++||+||++||++ |..+.|.|+++.+++. ++.++.|++|.
T Consensus 15 ~~f~~~~~~~k~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~~~----------------------- 65 (109)
T 3f3q_A 15 SEFDSAIAQDKLVVVDFYATWCGP-CKMIAPMIEKFSEQYP-----QADFYKLDVDE----------------------- 65 (109)
T ss_dssp HHHHHHTTSSSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTT-----------------------
T ss_pred HHHHHHHhcCCEEEEEEECCcCHh-HHHHHHHHHHHHHHCC-----CCEEEEEECCC-----------------------
Confidence 334333335899999999999998 9999999999999885 35566666542
Q ss_pred CChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 252 GSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
...+++.|+|...|+ +++++ +|+++.++.|. +++++.+.|.++
T Consensus 66 -----~~~l~~~~~v~~~Pt--------------~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 66 -----LGDVAQKNEVSAMPT--------------LLLFK-NGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp -----CHHHHHHTTCCSSSE--------------EEEEE-TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred -----CHHHHHHcCCCccCE--------------EEEEE-CCEEEEEEeCC-CHHHHHHHHHhh
Confidence 134678899998886 77776 99999988676 566666655543
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-13 Score=103.38 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=70.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |..+.|.++++.+++.+ ++.++.|++|.. .+
T Consensus 16 ~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~----~v~~~~v~~~~~----------------------------~~ 62 (105)
T 1nsw_A 16 GDGPVLVDFWAAWCGP-CRMMAPVLEEFAEAHAD----KVTVAKLNVDEN----------------------------PE 62 (105)
T ss_dssp SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHSTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CcEEEEEECcCC----------------------------HH
Confidence 5799999999999998 99999999999998864 377777776531 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.++
T Consensus 63 ~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 63 TTSQFGIMSIPT--------------LILF-KGGRPVKQLIGYQPKEQLEAQLADV 103 (105)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHTTTT
T ss_pred HHHHcCCccccE--------------EEEE-eCCeEEEEEecCCCHHHHHHHHHHH
Confidence 677899988886 7777 8999999888888877766665543
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=101.97 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=82.7
Q ss_pred EcCCCCeeeccc-cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 167 INHDGKNVTEKD-FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 167 ~d~~G~~vsLsd-~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
...+...+...- -.+|++||+||++||++ |..+.|.+.++.+++++....++.++.|++|.+
T Consensus 10 ~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---------------- 72 (133)
T 1x5d_A 10 IELTDDSFDKNVLDSEDVWMVEFYAPWCGH-CKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN---------------- 72 (133)
T ss_dssp EECCTTHHHHHTTTSSSEEEEEEECTTCHH-HHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC----------------
T ss_pred EEcCHhhHHHHHhcCCCeEEEEEECCCCHH-HHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC----------------
Confidence 344455443221 24799999999999998 999999999999999742123587787776531
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+++.|+|...|+ ++++++ |+++..+.+..+.+++.+.|.++++.
T Consensus 73 ------------~~l~~~~~v~~~Pt--------------~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 73 ------------QVLASRYGIRGFPT--------------IKIFQK-GESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp ------------CHHHHHHTCCSSSE--------------EEEEET-TEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred ------------HHHHHhCCCCeeCe--------------EEEEeC-CCceEEecCCCCHHHHHHHHHHHhhc
Confidence 24678899988887 888887 88888888888999999999888865
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=100.68 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=68.6
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.+.+||++||+||++||++ |..+.|.|.++++++. ++.++.|++|.+
T Consensus 20 ~~~~~~~vlv~f~a~wC~~-C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~--------------------------- 66 (111)
T 2pu9_C 20 KAAGDKPVVLDMFTQWCGP-SKAMAPKYEKLAEEYL-----DVIFLKLDCNQE--------------------------- 66 (111)
T ss_dssp TTCTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEECSST---------------------------
T ss_pred HhcCCCEEEEEEECCcCHh-HHHHCHHHHHHHHHCC-----CeEEEEEecCcc---------------------------
Confidence 4456899999999999998 9999999999998875 366677776521
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
...+++.|++...| +++++++|+++.++.|. +.+++.+.|.++
T Consensus 67 ~~~~~~~~~v~~~P---------------t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 67 NKTLAKELGIRVVP---------------TFKILKENSVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp THHHHHHHCCSBSS---------------EEEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred hHHHHHHcCCCeee---------------EEEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence 24567889998888 47788999999887665 455555555443
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=102.07 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.|.++.+++.+ ++.++.|++|.+ .+
T Consensus 30 ~~k~vlv~f~a~~C~~-C~~~~~~l~~~~~~~~~----~v~~~~vd~d~~----------------------------~~ 76 (119)
T 1w4v_A 30 SETPVVVDFHAQWCGP-CKILGPRLEKMVAKQHG----KVVMAKVDIDDH----------------------------TD 76 (119)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----SSEEEEEETTTT----------------------------HH
T ss_pred CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEeCCCC----------------------------HH
Confidence 5799999999999998 99999999999988854 477777776521 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+.+.+.|.+++
T Consensus 77 l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 77 LAIEYEVSAVPT--------------VLAM-KNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccE--------------EEEE-eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 678899998886 6666 89999998888888888877777665
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-12 Score=98.30 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=69.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|++||+||++||++ |....|.+.++.++++.. ++.++.|++|.. ..
T Consensus 20 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~----------------------------~~ 67 (112)
T 3d6i_A 20 GDKLIVLYFHTSWAEP-CKALKQVFEAISNEPSNS---NVSFLSIDADEN----------------------------SE 67 (112)
T ss_dssp TTCCEEEEEECCC--C-HHHHHHHHHHHHHCGGGT---TSEEEEEETTTC----------------------------HH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHhcCCC---CEEEEEEecccC----------------------------HH
Confidence 4899999999999998 999999999999987543 477777776521 25
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|++...|+ ++++ ++|+++.++.|. ..+++.+.|.+++..
T Consensus 68 ~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 68 ISELFEISAVPY--------------FIII-HKGTILKELSGA-DPKEYVSLLEDCKNS 110 (112)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEECSC-CHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccE--------------EEEE-ECCEEEEEecCC-CHHHHHHHHHHHHhh
Confidence 678899988886 5555 799999988775 555677777777654
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=99.46 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=70.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.++++.+++++ ++.++.|++|.+ .+
T Consensus 18 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~v~~~~~----------------------------~~ 64 (107)
T 1dby_A 18 SSVPVLVDFWAPWCGP-CRIIAPVVDEIAGEYKD----KLKCVKLNTDES----------------------------PN 64 (107)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCcEEEEEECCCCHh-HHHHHHHHHHHHHHhCC----ceEEEEEECCCC----------------------------HH
Confidence 4799999999999998 99999999999998864 377777776531 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|++...|+ +++ .++|+++..+.|..+.+++.+.|.+++
T Consensus 65 ~~~~~~v~~~Pt--------------~~~-~~~G~~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 65 VASEYGIRSIPT--------------IMV-FKGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp HHHHHTCCSSCE--------------EEE-ESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred HHHHCCCCcCCE--------------EEE-EeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 677889988885 444 489999998888888887777776654
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=110.50 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=60.7
Q ss_pred eccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 175 TEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 175 sLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
.+++++||++||+||++|||+ |+.++|.|.++++++. ++.++.|++|
T Consensus 48 ~l~~~~~k~vvv~F~A~WC~p-C~~~~P~l~~l~~~~~-----~v~~~~v~~d--------------------------- 94 (167)
T 1z6n_A 48 RLQRIERRYRLLVAGEMWCPD-CQINLAALDFAQRLQP-----NIELAIISKG--------------------------- 94 (167)
T ss_dssp HHHTCCSCEEEEEECCTTCHH-HHHHHHHHHHHHHHCT-----TEEEEEECHH---------------------------
T ss_pred HHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHCC-----CcEEEEEECC---------------------------
Confidence 456788999999999999999 9999999999988763 4777777654
Q ss_pred HHHHHHHHHcC---ceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 255 DEIRNIARAYR---VYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 255 d~~~~~a~~yg---v~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
...++++.|+ +..+|+ ++++|++|+++.++++
T Consensus 95 -~~~~~~~~~~~~~v~~iPt--------------~i~~~~~G~~~~~~g~ 129 (167)
T 1z6n_A 95 -RAEDDLRQRLALERIAIPL--------------VLVLDEEFNLLGRFVE 129 (167)
T ss_dssp -HHHHHTTTTTTCSSCCSSE--------------EEEECTTCCEEEEEES
T ss_pred -CCHHHHHHHHHcCCCCcCe--------------EEEECCCCCEEEEEcC
Confidence 1223344444 666666 8999999999888743
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-12 Score=100.80 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |..+.|.+.++.+++. ++.++.|++|.. ..
T Consensus 17 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~-----~~~~~~vd~~~~----------------------------~~ 62 (105)
T 4euy_A 17 EQQLVLLFIKTENCGV-CDVMLRKVNYVLENYN-----YVEKIEILLQDM----------------------------QE 62 (105)
T ss_dssp CSSEEEEEEEESSCHH-HHHHHHHHHHHHHTCT-----TEEEEEEEECCC------------------------------
T ss_pred cCCCEEEEEeCCCCcc-hHHHHHHHHHHHHHcC-----CceEEEEECCCC----------------------------HH
Confidence 5899999999999998 9999999999998873 478888887642 13
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|++...|+ ++++ ++|+++.++.|..+.+++.+.|.+++
T Consensus 63 l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 63 IAGRYAVFTGPT--------------VLLF-YNGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp -------CCCCE--------------EEEE-ETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred HHHhcCCCCCCE--------------EEEE-eCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 567788888886 6666 59999999888888887777776543
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=105.36 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=75.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.+.++.+++.++ +.++.|++|.. ..
T Consensus 23 ~~~~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~----v~~~~vd~~~~----------------------------~~ 69 (140)
T 3hz4_A 23 SKKPVVVMFYSPACPY-CKAMEPYFEEYAKEYGSS----AVFGRINIATN----------------------------PW 69 (140)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT----SEEEEEETTTC----------------------------HH
T ss_pred CCCcEEEEEECCCChh-HHHHHHHHHHHHHHhCCc----eEEEEEECCcC----------------------------Hh
Confidence 4899999999999998 999999999999999753 77777776532 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|+|...|+ ++++ ++|+++.++.|..+.+++.+.|.+++++
T Consensus 70 l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 70 TAEKYGVQGTPT--------------FKFF-CHGRPVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp HHHHHTCCEESE--------------EEEE-ETTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCcCCE--------------EEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence 677899999995 4444 8999999988888999999999888864
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-13 Score=110.06 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=72.3
Q ss_pred EEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 165 KLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 165 ~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
++.+.++-.-.+++.+||++||+||++||++ |..+.|.++++.+++ ++.++.|++|.
T Consensus 24 ~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~------~v~~~~vd~~~---------------- 80 (133)
T 3cxg_A 24 ELKNTGSLNQVFSSTQNSSIVIKFGAVWCKP-CNKIKEYFKNQLNYY------YVTLVDIDVDI---------------- 80 (133)
T ss_dssp ECCCTTHHHHHHTC-CCSEEEEEEECTTCHH-HHHTHHHHHGGGGTE------ECEEEEEETTT----------------
T ss_pred EecChhHHHHHHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHHhc------CEEEEEEeccc----------------
Confidence 3333333333456678999999999999998 999999988876544 35556665442
Q ss_pred CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEE-cCCCe--EEEEeCCCCChhHHHHHHHHHHH
Q 020776 245 PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLM-SPKME--FVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 245 ~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LI-D~dG~--Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++.|+|..+|+ ++++ |++|+ ++.++.|. +.+++.+.|.+++.
T Consensus 81 ------------~~~l~~~~~v~~~Pt--------------~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 81 ------------HPKLNDQHNIKALPT--------------FEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp ------------CHHHHHHTTCCSSSE--------------EEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred ------------hHHHHHhcCCCCCCE--------------EEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 134678899998887 6676 45665 88887776 77777777776654
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-14 Score=120.75 Aligned_cols=111 Identities=9% Similarity=0.147 Sum_probs=80.1
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
++.+.+.+ +.+.....+||+|||+||++||++ |..+.|.|.++.+.+..+ +.++.|++|...+.
T Consensus 29 ~i~w~~~~-~~~~~~~~~~k~vlv~F~a~WC~~-C~~~~p~l~~~~~~~~~~----~~~~~v~~d~~~~~---------- 92 (164)
T 1sen_A 29 HIHWRTLE-DGKKEAAASGLPLMVIIHKSWCGA-CKALKPKFAESTEISELS----HNFVMVNLEDEEEP---------- 92 (164)
T ss_dssp TSCBCCHH-HHHHHHHHHTCCEEEEEECTTCHH-HHHHHHHHHTCHHHHHHH----TTSEEEEEEGGGSC----------
T ss_pred cccccCHH-HHHHHHHhcCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhhcC----CeEEEEEecCCchH----------
Confidence 55565555 567777778999999999999998 999999999987666443 33455565532110
Q ss_pred hCCCceeecCChHHHHHHHHHcCc--eEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC----------CChhHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRV--YYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN----------NDVNSLAD 310 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv--~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~----------~~~~~l~~ 310 (321)
+...|++ ..+|+ ++++|++|+++.++.+. .+.+++.+
T Consensus 93 -----------------~~~~~~~~~~~~Pt--------------~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~ 141 (164)
T 1sen_A 93 -----------------KDEDFSPDGGYIPR--------------ILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ 141 (164)
T ss_dssp -----------------SCGGGCTTCSCSSE--------------EEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHH
T ss_pred -----------------HHHHhcccCCcCCe--------------EEEECCCCCEEEEEeCCCCccchhcccCCHHHHHH
Confidence 1233444 44565 89999999999876663 67888999
Q ss_pred HHHHHHHHHh
Q 020776 311 GIIKEIKQYK 320 (321)
Q Consensus 311 ~l~~~L~~~k 320 (321)
.|.+++++++
T Consensus 142 ~l~~~l~~~~ 151 (164)
T 1sen_A 142 GMKEAQERLT 151 (164)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHhcc
Confidence 9998887664
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=99.55 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=70.3
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+|++||+||++||++ |..+.|.|.++.+++.+ ++.++.|++|. ...+
T Consensus 24 ~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~vd~~~----------------------------~~~~ 70 (112)
T 1ep7_A 24 HKPIVVDFTATWCGP-CKMIAPLFETLSNDYAG----KVIFLKVDVDA----------------------------VAAV 70 (112)
T ss_dssp TCCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTT----------------------------THHH
T ss_pred CCeEEEEEECCCCHH-HHHHHHHHHHHHHHcCC----CeEEEEEECCc----------------------------hHHH
Confidence 899999999999998 99999999999998863 46777777542 1356
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++.|++...|+ +++.++|+++..+.|. +.+++.+.|.++++
T Consensus 71 ~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 71 AEAAGITAMPT---------------FHVYKDGVKADDLVGA-SQDKLKALVAKHAA 111 (112)
T ss_dssp HHHHTCCBSSE---------------EEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred HHHcCCCcccE---------------EEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence 78899988884 5556899999988776 88877777777653
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=102.57 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=74.8
Q ss_pred CeEEEcCCCCe--eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 163 PFKLINHDGKN--VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 163 ~f~l~d~~G~~--vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
-+++.+.++-. +..+..++|++||+||++||++ |..+.|.|+++.+++. ++.++.|++|.
T Consensus 18 v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~-C~~~~~~l~~l~~~~~-----~v~~~~vd~d~------------ 79 (124)
T 1xfl_A 18 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGP-CRFIAPFFADLAKKLP-----NVLFLKVDTDE------------ 79 (124)
T ss_dssp CEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHCS-----SEEEEEEETTT------------
T ss_pred EEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC-----CcEEEEEECcc------------
Confidence 34554443322 2223346999999999999998 9999999999988874 47777777652
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..+++++|++...|+ +++.++|+++.++.+ .+.+++.+.|.+++
T Consensus 80 ----------------~~~l~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 80 ----------------LKSVASDWAIQAMPT---------------FMFLKEGKILDKVVG-AKKDELQSTIAKHL 123 (124)
T ss_dssp ----------------SHHHHHHTTCCSSSE---------------EEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred ----------------CHHHHHHcCCCccCE---------------EEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence 135678899988885 455589999998877 47776666665543
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=105.30 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=77.8
Q ss_pred CCCCeeeccc-cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 169 HDGKNVTEKD-FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 169 ~~G~~vsLsd-~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
.+++.+...- -.+|++||+||++||++ |....|.++++.+++++ ++.++.|++|.+.
T Consensus 27 l~~~~f~~~~~~~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~~~~~----------------- 84 (128)
T 2o8v_B 27 LTDDSFDTDVLKADGAILVDFWAEWCGP-AKMIAPILDEIADEYQG----KLTVAKLNIDQNP----------------- 84 (128)
T ss_dssp ECTTTHHHHTTTCSSEEEEEEECSSCHH-HHHTHHHHHHHHHHTTT----TEEEEEEETTTCC-----------------
T ss_pred cChhhHHHHHHhcCCEEEEEEECCCCHH-HHHHhHHHHHHHHHhcC----CeEEEEEECCCCH-----------------
Confidence 3455554222 25899999999999998 99999999999998864 4888888876421
Q ss_pred eeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 248 IGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 248 ~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++.|+|...|+ ++++ ++|+++..+.|..+.+++.+.|.+++
T Consensus 85 -----------~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 85 -----------GTAPKYGIRGIPT--------------LLLF-KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp -----------TTSGGGTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHcCCCccCE--------------EEEE-eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 2456788888886 7777 89999998888888888888877765
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=97.99 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=75.9
Q ss_pred EcCCCCeeeccc-cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 167 INHDGKNVTEKD-FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 167 ~d~~G~~vsLsd-~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
.+.+++.+...- -.+|+++|+||++||++ |....|.+.++.+++++ ++.++.|++|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~v~~~~~---------------- 61 (105)
T 1fb6_A 3 QDVNDSSWKEFVLESEVPVMVDFWAPWCGP-CKLIAPVIDELAKEYSG----KIAVYKLNTDEA---------------- 61 (105)
T ss_dssp EECCTTTHHHHTTTCSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC----------------
T ss_pred eechhhhHHHHHhcCCCcEEEEEECCCChH-HHHHHHHHHHHHHHhcC----ceEEEEEcCcch----------------
Confidence 445555554322 24799999999999998 99999999999998864 367777776521
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|++...|+ + ++.++|+++..+.|..+.+++.+.|.++
T Consensus 62 ------------~~~~~~~~v~~~Pt--------------~-~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 62 ------------PGIATQYNIRSIPT--------------V-LFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp ------------HHHHHHTTCCSSSE--------------E-EEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred ------------HHHHHhCCCCcccE--------------E-EEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 34678899988885 4 4447999999888888888777777654
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.5e-12 Score=97.51 Aligned_cols=90 Identities=12% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |....|.+.++.+++.+ ++.++.|++|.. ..
T Consensus 21 ~~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~~----~v~~~~vd~~~~----------------------------~~ 67 (111)
T 3gnj_A 21 EGKACLVMFSRKNCHV-CQKVTPVLEELRLNYEE----SFGFYYVDVEEE----------------------------KT 67 (111)
T ss_dssp SCCCEEEEEECSSCHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTTC----------------------------HH
T ss_pred cCCEEEEEEeCCCChh-HHHHHHHHHHHHHHcCC----ceEEEEEECCcC----------------------------hh
Confidence 5799999999999998 99999999999998864 367777776531 25
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++++|++...|+ ++++ ++|+++.++.|..+.+++.+.|.+.++
T Consensus 68 l~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 68 LFQRFSLKGVPQ--------------ILYF-KDGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp HHHHTTCCSSCE--------------EEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCcCCE--------------EEEE-ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 678899988886 6666 799999888888898988888888765
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-12 Score=97.43 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=76.5
Q ss_pred EcCCCCeeecc-ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 167 INHDGKNVTEK-DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 167 ~d~~G~~vsLs-d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
...+++.+... .-.++++||+||++||++ |....|.+.++.+++.+ ++.++.|++|.+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~v~~~~~---------------- 63 (107)
T 2i4a_A 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGP-CKMIGPALGEIGKEFAG----KVTVAKVNIDDN---------------- 63 (107)
T ss_dssp EECCTTTHHHHTTTCSSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTT----SEEEEEEETTTC----------------
T ss_pred eecchhhhhHHHHhCCCEEEEEEECCCChh-HHHHhHHHHHHHHHhCC----cEEEEEEECCCC----------------
Confidence 34455555322 135899999999999998 99999999999999864 488888887632
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+
T Consensus 64 ------------~~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 64 ------------PETPNAYQVRSIPT--------------LMLV-RDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp ------------CHHHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHH
T ss_pred ------------HHHHHhcCCCccCE--------------EEEE-eCCEEEEEecCCCCHHHHHHHHHh
Confidence 14577899988886 7777 899999988888887777666654
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-12 Score=106.25 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=75.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |..+.|.|+++.+++.+ ++.++.|++|.+ ..
T Consensus 63 ~~~~vlv~F~a~wC~~-C~~~~p~l~~la~~~~~----~v~~~~vd~~~~----------------------------~~ 109 (155)
T 2ppt_A 63 DDLPLLVDFWAPWCGP-CRQMAPQFQAAAATLAG----QVRLAKIDTQAH----------------------------PA 109 (155)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT----TCEEEEEETTTS----------------------------TH
T ss_pred CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHccC----CEEEEEEeCCcc----------------------------HH
Confidence 5899999999999998 99999999999999964 377777776532 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|+|..+|+ ++++ ++|+++.++.|..+.+++.+.|.+++.+
T Consensus 110 l~~~~~i~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 153 (155)
T 2ppt_A 110 VAGRHRIQGIPA--------------FILF-HKGRELARAAGARPASELVGFVRGKLGA 153 (155)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred HHHHcCCCcCCE--------------EEEE-eCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence 678899998886 6666 7999999988888888888888887753
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=103.69 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=76.5
Q ss_pred CeEEEcCCCCeeeccc--cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKD--FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd--~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
.+.+.+.++-.-.+.+ -.+|++||+||++||++ |....|.|+++.+++. ++.++.|++|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~~vd~~~------------ 75 (122)
T 2vlu_A 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGP-CRIMAPVFADLAKKFP-----NAVFLKVDVDE------------ 75 (122)
T ss_dssp CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTT------------
T ss_pred ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC-----CcEEEEEECCC------------
Confidence 5665544332222333 26899999999999998 9999999999988875 26667777652
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++.|++...|+ +++.++|+++.++.|.. .+++.+.|.+++.
T Consensus 76 ----------------~~~~~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 76 ----------------LKPIAEQFSVEAMPT---------------FLFMKEGDVKDRVVGAI-KEELTAKVGLHAA 120 (122)
T ss_dssp ----------------CHHHHHHTTCCSSSE---------------EEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred ----------------CHHHHHHcCCCcccE---------------EEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence 134678899988884 55558999998887777 7777777777654
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-12 Score=97.72 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++++||+||++||++ |....+.+.++.+++. ++.++.|++|.+ ..
T Consensus 15 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-----~~~~~~v~~~~~----------------------------~~ 60 (104)
T 2e0q_A 15 SHEIAVVDFWAEWCAP-CLILAPIIEELAEDYP-----QVGFGKLNSDEN----------------------------PD 60 (104)
T ss_dssp HSSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTTC----------------------------HH
T ss_pred cCCcEEEEEECCCChh-HHHHhHHHHHHHHHcC-----CceEEEEECCCC----------------------------HH
Confidence 5899999999999998 9999999999988875 266677776531 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+++.
T Consensus 61 ~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 61 IAARYGVMSLPT--------------VIFF-KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp HHHHTTCCSSCE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred HHHhCCccccCE--------------EEEE-ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 678899988886 6666 899999988888888888888887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-12 Score=115.54 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=77.5
Q ss_pred EcCCCCeee--ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 167 INHDGKNVT--EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 167 ~d~~G~~vs--Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
.+.+.+.+. +...+||+|||+||++||++ |+.+.|.+.++.+++++ ++.++.|++|.+
T Consensus 10 ~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~~----~~~~~~vd~~~~--------------- 69 (287)
T 3qou_A 10 VNINESNLQQVLEQSMTTPVLFYFWSERSQH-CLQLTPILESLAAQYNG----QFILAKLDCDAE--------------- 69 (287)
T ss_dssp EECCTTTHHHHHTTTTTSCEEEEEECTTCTT-TTTTHHHHHHHHHHHTS----SSEEEEEETTTC---------------
T ss_pred EECCHHHHHHHHHhcCCCeEEEEEECCCChH-HHHHHHHHHHHHHHcCC----CeEEEEEeCccC---------------
Confidence 334444443 23345899999999999998 99999999999999974 377777776531
Q ss_pred CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 245 PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 245 ~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|+|..+|+ ++++ ++|+++..+.|..+.+.+.+.+.+.
T Consensus 70 -------------~~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~ 112 (287)
T 3qou_A 70 -------------QMIAAQFGLRAIPT--------------VYLF-QNGQPVDGFQGPQPEEAIRALLDXV 112 (287)
T ss_dssp -------------HHHHHTTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred -------------HHHHHHcCCCCCCe--------------EEEE-ECCEEEEEeeCCCCHHHHHHHHHHH
Confidence 25688899998886 6666 7999999888888887777766554
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.8e-12 Score=105.23 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=73.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|||.|||+||+| |+...|.|.++.++++++ +.++-|++|... +
T Consensus 40 ~~k~VVVdF~A~WCgP-Ck~m~PvleelA~e~~~~----v~f~kVDVDe~~----------------------------e 86 (160)
T 2av4_A 40 DERLVCIRFGHDYDPD-CMKMDELLYKVADDIKNF----CVIYLVDITEVP----------------------------D 86 (160)
T ss_dssp SSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHTTT----EEEEEEETTTCC----------------------------T
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHccCC----cEEEEEECCCCH----------------------------H
Confidence 4689999999999999 999999999999999653 778888877532 2
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE--E-------EeCCCCC-hhHHHHHHHHHHHHHh
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV--K-------FFGKNND-VNSLADGIIKEIKQYK 320 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~-------~~~~~~~-~~~l~~~l~~~L~~~k 320 (321)
++..|+|..+|+ +++-++|+.+ . +..+... .+++.+.|++.++.-+
T Consensus 87 ~a~~y~V~siPT---------------~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~ 142 (160)
T 2av4_A 87 FNTMYELYDPVS---------------VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGAR 142 (160)
T ss_dssp TTTTTTCCSSEE---------------EEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCE---------------EEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhh
Confidence 477899998885 5555788887 4 6666655 8888888888876554
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-12 Score=96.80 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=70.1
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
++.++|+++|+||++||++ |....|.+.++.+++. ++.++.|++|..
T Consensus 16 ~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~--------------------------- 62 (105)
T 3m9j_A 16 DAAGDKLVVVDFSATWCGP-CKMIKPFFHSLSEKYS-----NVIFLEVDVDDC--------------------------- 62 (105)
T ss_dssp HHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHST-----TSEEEEEETTTC---------------------------
T ss_pred HhcCCCeEEEEEECCCChh-hHHHHHHHHHHHHHcc-----CeEEEEEEhhhh---------------------------
Confidence 3446899999999999998 9999999999998885 366666665421
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+.+.|++...|+ ++++ ++|+++.++.|. +.+++.+.|.++
T Consensus 63 -~~~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 63 -QDVASESEVKSMPT--------------FQFF-KKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp -HHHHHHTTCCBSSE--------------EEEE-ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred -HHHHHHcCCCcCcE--------------EEEE-ECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 34678899998886 6666 889999888777 877777776654
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=103.37 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=70.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++++||+||++||++ |....|.|.++.+++. ++.++.|++|.. .+
T Consensus 36 ~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~----------------------------~~ 81 (125)
T 1r26_A 36 EDILTVAWFTAVWCGP-CKTIERPMEKIAYEFP-----TVKFAKVDADNN----------------------------SE 81 (125)
T ss_dssp SSSCEEEEEECTTCHH-HHHTHHHHHHHHHHCT-----TSEEEEEETTTC----------------------------HH
T ss_pred cCCEEEEEEECCcCHh-HHHHHHHHHHHHHHCC-----CCEEEEEECCCC----------------------------HH
Confidence 6899999999999998 9999999999998883 366777776521 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.|++...|+ +++.++|+++..+.| .+.+++.+.|.++++
T Consensus 82 l~~~~~v~~~Pt---------------~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 82 IVSKCRVLQLPT---------------FIIARSGKMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp HHHHTTCCSSSE---------------EEEEETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccE---------------EEEEeCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence 678899988885 455589999988877 677888887777765
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-12 Score=103.09 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=75.6
Q ss_pred CeEEEEEecCCC--CCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 182 KWTVIYFGFTHC--PDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 182 K~vLL~FwatwC--p~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|||+||++|| ++ |++..|.|.++.++|.+ ++.++-|++| ...+
T Consensus 34 ~~vlVdF~A~wCr~gp-Ck~iaPvleela~e~~~----~v~~~KVdvD----------------------------e~~~ 80 (137)
T 2qsi_A 34 KIVVLFFRGDAVRFPE-AADLAVVLPELINAFPG----RLVAAEVAAE----------------------------AERG 80 (137)
T ss_dssp SEEEEEECCCTTTCTT-HHHHHHHHHHHHHTSTT----TEEEEEECGG----------------------------GHHH
T ss_pred CcEEEEEeCCccCCCc-hhhHHhHHHHHHHHccC----CcEEEEEECC----------------------------CCHH
Confidence 499999999999 98 99999999999999964 4777766644 4467
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++.+|+|..+|+ +++-++|+++.+..|..+.+++.+.|.+.++
T Consensus 81 la~~ygV~siPT---------------lilFkdG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 81 LMARFGVAVCPS---------------LAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp HHHHHTCCSSSE---------------EEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCccCCE---------------EEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 899999999994 6777999999999999999999988888774
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-12 Score=98.87 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.+.++.+++.+ ++.++.|++|.+ ..
T Consensus 17 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~v~~~~~----------------------------~~ 63 (109)
T 2yzu_A 17 QHPLVLVDFWAEWCAP-CRMIAPILEEIAKEYEG----KLLVAKLDVDEN----------------------------PK 63 (109)
T ss_dssp HCSEEEEEEECTTCHH-HHHHHHHHHHHHHHTBT----TBEEEEEETTTC----------------------------HH
T ss_pred CCCeEEEEEECCCCHH-HHHhhHHHHHHHHHhhC----ceEEEEEECCCC----------------------------Hh
Confidence 4799999999999998 99999999999998864 377777776531 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+++.
T Consensus 64 ~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 106 (109)
T 2yzu_A 64 TAMRYRVMSIPT--------------VILF-KDGQPVEVLVGAQPKRNYQAKIEKHLP 106 (109)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred HHHhCCCCcCCE--------------EEEE-eCCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence 678899988886 6777 899999988888888887777766553
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=113.68 Aligned_cols=108 Identities=10% Similarity=0.155 Sum_probs=86.0
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+..+.+.+++.+.....+++++||+||++||++ |..+.|.+.++.+++++ .+.++.|++|.+
T Consensus 96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~~----~v~~~~vd~~~~------------- 157 (210)
T 3apq_A 96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSH-CHDLAPTWREFAKEVDG----LLRIGAVNCGDD------------- 157 (210)
T ss_dssp CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHH-HHHHHHHHHHHHHHTBT----TBEEEEEETTTC-------------
T ss_pred CCceEEecHHHHHHHHccCCcEEEEEeCCCChh-HHHHHHHHHHHHHHhcC----ceEEEEEECCcc-------------
Confidence 445566667666555457899999999999998 99999999999998864 377777776532
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+++.|+|...|+ ++++ ++|+++..+.|..+.+++.+.|.+.+..
T Consensus 158 ---------------~~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~ 203 (210)
T 3apq_A 158 ---------------RMLCRMKGVNSYPS--------------LFIF-RSGMAAVKYNGDRSKESLVAFAMQHVRS 203 (210)
T ss_dssp ---------------HHHHHHTTCCSSSE--------------EEEE-CTTSCCEECCSCCCHHHHHHHHHHHHHC
T ss_pred ---------------HHHHHHcCCCcCCe--------------EEEE-ECCCceeEecCCCCHHHHHHHHHHhCcc
Confidence 24677899988886 6666 9999999988988999999988888753
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=95.07 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=68.8
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.+.++++++|+||++||++ |....|.++++.++++. ++.++.|++|..
T Consensus 16 ~~~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~v~~~~~--------------------------- 63 (106)
T 1xwb_A 16 TKASGKLVVLDFFATWCGP-CKMISPKLVELSTQFAD----NVVVLKVDVDEC--------------------------- 63 (106)
T ss_dssp HHHTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TEEEEEEETTTC---------------------------
T ss_pred HhcCCCEEEEEEECCcCHH-HHHhhHHHHHHHHHhCC----CeEEEEEeccch---------------------------
Confidence 3347899999999999998 99999999999988853 477787776521
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.|++...|+ +++.++|+++..+.| .+.+++.+.|.+
T Consensus 64 -~~~~~~~~v~~~Pt---------------~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 64 -EDIAMEYNISSMPT---------------FVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp -HHHHHHTTCCSSSE---------------EEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred -HHHHHHcCCCcccE---------------EEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 34678899988884 555589999998877 676666555544
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=99.54 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=75.9
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
+...+.+.+. ..+++ .+||+||++||++ |..+.|.|.++.+++.+. ++.++.|++|.+
T Consensus 9 v~~l~~~~f~-~~~~~-~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~---~v~~~~vd~~~~---------------- 66 (126)
T 1x5e_A 9 VRVITDENWR-ELLEG-DWMIEFYAPWCPA-CQNLQPEWESFAEWGEDL---EVNIAKVDVTEQ---------------- 66 (126)
T ss_dssp EEECCTTTHH-HHTSS-EEEEEEECSSCHH-HHHHHHHHHHHHHHHGGG---TCEEEEEETTTC----------------
T ss_pred cEEecHHHHH-HHhCC-CEEEEEECCCCHH-HHHHhHHHHHHHHHhccC---CeEEEEEECcCC----------------
Confidence 3444555554 12344 4899999999998 999999999999998754 477777776521
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
..+++.|+|...|+ ++++ ++|++ ..+.|..+.+++.+.|.+.+.
T Consensus 67 ------------~~~~~~~~v~~~Pt--------------~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~~ 110 (126)
T 1x5e_A 67 ------------PGLSGRFIINALPT--------------IYHC-KDGEF-RRYQGPRTKKDFINFISDKEW 110 (126)
T ss_dssp ------------HHHHHHTTCCSSSE--------------EEEE-ETTEE-EECCSCCCHHHHHHHHHTCGG
T ss_pred ------------HHHHHHcCCcccCE--------------EEEE-eCCeE-EEeecCCCHHHHHHHHHHHhh
Confidence 23678899988887 7777 89996 667788888888887776654
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=99.21 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=66.7
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.+.+||++||+||++||++ |..+.|.++++.+++. ++.++.|++|.+
T Consensus 33 ~~~~~~~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~-----~~~~~~vd~~~~--------------------------- 79 (124)
T 1faa_A 33 KAAGDKPVVLDMFTQWCGP-CKAMAPKYEKLAEEYL-----DVIFLKLDCNQE--------------------------- 79 (124)
T ss_dssp HHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEECSST---------------------------
T ss_pred HhcCCCEEEEEEECCcCHh-HHHHhHHHHHHHHHCC-----CCEEEEEecCcc---------------------------
Confidence 3457899999999999998 9999999999998875 356666665421
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..++++.|++...| +++++++|+++.++.|.. .+++.+.|.+
T Consensus 80 ~~~~~~~~~v~~~P---------------t~~~~~~G~~~~~~~G~~-~~~l~~~i~~ 121 (124)
T 1faa_A 80 NKTLAKELGIRVVP---------------TFKILKENSVVGEVTGAK-YDKLLEAIQA 121 (124)
T ss_dssp THHHHHHHCCSSSS---------------EEEEEETTEEEEEEESSC-HHHHHHHHHH
T ss_pred hHHHHHHcCCCeee---------------EEEEEeCCcEEEEEcCCC-HHHHHHHHHH
Confidence 13567889998888 467779999998876653 5554444443
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=99.67 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=72.7
Q ss_pred EcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 167 ~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
.+.+++.+...-.+++.+||+||++||++ |....|.|.++.+++.+ ++.++.|++|.+
T Consensus 36 ~~l~~~~~~~~~~~~~~vvv~f~~~~C~~-C~~~~~~l~~l~~~~~~----~v~~~~vd~~~~----------------- 93 (140)
T 1v98_A 36 VEADEKGFAQEVAGAPLTLVDFFAPWCGP-CRLVSPILEELARDHAG----RLKVVKVNVDEH----------------- 93 (140)
T ss_dssp -------------CCCEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TEEEEEEETTTC-----------------
T ss_pred ccCCHHHHHHHHHcCCCEEEEEECCCCHH-HHHHHHHHHHHHHHccC----ceEEEEEECCCC-----------------
Confidence 34455555433333444999999999998 99999999999998864 488888876531
Q ss_pred ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 247 LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 247 ~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
..+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.++++
T Consensus 94 -----------~~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 94 -----------PGLAARYGVRSVPT--------------LVLF-RRGAPVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp -----------HHHHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred -----------HHHHHHCCCCccCE--------------EEEE-eCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence 24678899988886 5666 799999988888888888888887765
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=99.02 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=69.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|++||+||++||++ |....|.|+++.+++.++ ++.++.|++|.. .+
T Consensus 32 ~~k~vvv~f~a~~C~~-C~~~~~~l~~l~~~~~~~---~v~~~~vd~d~~----------------------------~~ 79 (121)
T 2j23_A 32 GDKVVVIDFWATWCGP-CKMIGPVFEKISDTPAGD---KVGFYKVDVDEQ----------------------------SQ 79 (121)
T ss_dssp SSSCEEEEEECTTCST-HHHHHHHHHHHHTSTHHH---HSEEEEEETTTC----------------------------HH
T ss_pred CCCEEEEEEECCCCHh-HHHHHHHHHHHHHHCcCC---cEEEEEEECcCC----------------------------HH
Confidence 5899999999999998 999999999999988765 467777776531 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|++...|+ ++++ ++|+++..+.|. +.+++.+.|.+++
T Consensus 80 ~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 80 IAQEVGIRAMPT--------------FVFF-KNGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp HHHHHTCCSSSE--------------EEEE-ETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred HHHHcCCCcccE--------------EEEE-ECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 678889988885 5555 699999887776 7777666666543
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=99.24 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=67.2
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+++.++|++||+||++||++ |....|.++++.+++ ++.++.|++|.
T Consensus 28 l~~~~~~~~vv~f~a~wC~~-C~~~~~~~~~~~~~~------~~~~~~vd~~~--------------------------- 73 (117)
T 2xc2_A 28 LEQHKNKLVVVDFFATWCGP-CKTIAPLFKELSEKY------DAIFVKVDVDK--------------------------- 73 (117)
T ss_dssp HHHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHTTS------SSEEEEEETTT---------------------------
T ss_pred HHhCCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHc------CcEEEEEECCc---------------------------
Confidence 34457999999999999998 999999999987766 36666666542
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..++++.|++...|+ +++.++|+++.++.| .+.+++.+.|.++
T Consensus 74 -~~~~~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 74 -LEETARKYNISAMPT---------------FIAIKNGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp -SHHHHHHTTCCSSSE---------------EEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred -cHHHHHHcCCCccce---------------EEEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence 134678899988884 455589999998877 5666666655543
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=103.28 Aligned_cols=90 Identities=9% Similarity=0.160 Sum_probs=71.4
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
+.++|++||+||++||++ |..+.|.+.++.+++. ++.++.|++|..
T Consensus 29 ~~~~~~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~-----~v~~~~vd~~~~---------------------------- 74 (153)
T 2wz9_A 29 LKAKSLLVVHFWAPWAPQ-CAQMNEVMAELAKELP-----QVSFVKLEAEGV---------------------------- 74 (153)
T ss_dssp HTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTTS----------------------------
T ss_pred hcCCCeEEEEEECCCCHh-HHHHHHHHHHHHHHcC-----CeEEEEEECCCC----------------------------
Confidence 335899999999999998 9999999999998873 467777776521
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
..+++.|+|..+|+ +++++ +|+++.++.| .+.+++.+.|.+++.
T Consensus 75 ~~l~~~~~v~~~Pt--------------~~~~~-~G~~~~~~~G-~~~~~l~~~i~~~l~ 118 (153)
T 2wz9_A 75 PEVSEKYEISSVPT--------------FLFFK-NSQKIDRLDG-AHAPELTKKVQRHAS 118 (153)
T ss_dssp HHHHHHTTCCSSSE--------------EEEEE-TTEEEEEEES-SCHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCCCCE--------------EEEEE-CCEEEEEEeC-CCHHHHHHHHHHHhc
Confidence 24678899998887 88888 9999988766 467777777766654
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-11 Score=102.28 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=70.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |..+.|.|.++++++++ ++.++.|++|.+. +
T Consensus 22 ~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~~~----------------------------~ 68 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPT-CMKMDEVLYSIAEKVKN----FAVIYLVDITEVP----------------------------D 68 (142)
T ss_dssp SSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHTT----TEEEEEEETTTCC----------------------------T
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC----CeEEEEEccccCH----------------------------H
Confidence 4899999999999998 99999999999999864 4888888877431 1
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE---------eCCCC-ChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF---------FGKNN-DVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~---------~~~~~-~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ ++++ ++|+++.. ..+.. +.+++.+.|+++++..
T Consensus 69 ~~~~~~i~~~Pt--------------~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 69 FNKMYELYDPCT--------------VMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp TTTSSCSCSSCE--------------EEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCE--------------EEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 366788888886 6666 58888763 33334 3777888888777654
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=97.43 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+||++||+||++||++ |....|.+.++.+++. ++.++.|++|.. ..
T Consensus 25 ~~k~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~-----~v~~~~vd~~~~----------------------------~~ 70 (112)
T 1syr_A 25 QNELVIVDFFAEWCGP-CKRIAPFYEECSKTYT-----KMVFIKVDVDEV----------------------------SE 70 (112)
T ss_dssp HCSEEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTTT----------------------------HH
T ss_pred cCCeEEEEEECCCCHH-HHHHHHHHHHHHHHcC-----CCEEEEEECCCC----------------------------HH
Confidence 6899999999999998 9999999999988874 366677776521 25
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|++...|+ +++.++|+++.++.|. +.+++.+.|.++
T Consensus 71 ~~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 71 VTEKENITSMPT---------------FKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp HHHHTTCCSSSE---------------EEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred HHHHcCCCcccE---------------EEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 678899988884 4555799999888777 777666665543
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=98.54 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.|+++||+||++||++ |+.+.|.|.++.+++. ..+ +.+++|...| .+....
T Consensus 28 ~~~~~~v~f~a~wC~~-C~~~~p~l~~~~~~~~----~~v--~~~~~~~~~~----------------------~~~~~~ 78 (118)
T 1zma_A 28 KKETATFFIGRKTCPY-CRKFAGTLSGVVAETK----AHI--YFINSEEPSQ----------------------LNDLQA 78 (118)
T ss_dssp TTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHC----CCC--EEEETTCGGG----------------------HHHHHH
T ss_pred CCCeEEEEEECCCCcc-HHHHHHHHHHHHHhcC----CeE--EEEECCCcCc----------------------HHHHHH
Confidence 5789999999999998 9999999999988774 234 4456553110 234456
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++.|+|..+|+ ++++ ++|+++.++.|..+.+++.+.|
T Consensus 79 ~~~~~~i~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 79 FRSRYGIPTVPG--------------FVHI-TDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp HHHHHTCCSSCE--------------EEEE-ETTEEEEECCTTCCHHHHHHHH
T ss_pred HHHHcCCCCCCe--------------EEEE-ECCEEEEEecCCCCHHHHHHHh
Confidence 788899998886 6666 5999999888888877666554
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=101.54 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=73.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++ ++||+||++||++ |..+.|.+.++.++++ +.++.|+++...+. . ..+....
T Consensus 31 ~~-~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~------v~~~~vd~~~~~~~-~------------------~~d~~~~ 83 (135)
T 3emx_A 31 QG-DAILAVYSKTCPH-CHRDWPQLIQASKEVD------VPIVMFIWGSLIGE-R------------------ELSAARL 83 (135)
T ss_dssp TS-SEEEEEEETTCHH-HHHHHHHHHHHHTTCC------SCEEEEEECTTCCH-H------------------HHHHHHH
T ss_pred CC-cEEEEEECCcCHh-hhHhChhHHHHHHHCC------CEEEEEECCCchhh-h------------------hhhhhHH
Confidence 45 9999999999998 9999999999987663 55667777543221 0 1355677
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++++|+|..+|+ + ++.++|+++.++.|..+.+.+.+.+++++..
T Consensus 84 l~~~~~v~~~Pt--------------~-~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~ 127 (135)
T 3emx_A 84 EMNKAGVEGTPT--------------L-VFYKEGRIVDKLVGATPWSLKVEKAREIYGG 127 (135)
T ss_dssp HHHHHTCCSSSE--------------E-EEEETTEEEEEEESCCCHHHHHHHHHHHC--
T ss_pred HHHHcCCceeCe--------------E-EEEcCCEEEEEEeCCCCHHHHHHHHHHHhCC
Confidence 899999999885 4 4445999999998988888887777777653
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=94.59 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=66.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|++||+||++||++ |....|.+.++.+++. ++.++.|++|.. .+
T Consensus 20 ~~~~v~v~f~a~wC~~-C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~----------------------------~~ 65 (107)
T 1gh2_A 20 GSRLAVVKFTMRGCGP-CLRIAPAFSSMSNKYP-----QAVFLEVDVHQC----------------------------QG 65 (107)
T ss_dssp TTSCEEEEEECSSCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTTS----------------------------HH
T ss_pred CCCEEEEEEECCCChh-hHHHHHHHHHHHHHCC-----CcEEEEEECccC----------------------------HH
Confidence 6899999999999998 9999999999998883 366677776521 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|++...|+ ++++ ++|+++.++.| .+.+++.+.|.+.+
T Consensus 66 ~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~l 106 (107)
T 1gh2_A 66 TAATNNISATPT--------------FQFF-RNKVRIDQYQG-ADAVGLEEKIKQHL 106 (107)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred HHHhcCCCcccE--------------EEEE-ECCeEEEEEeC-CCHHHHHHHHHHhc
Confidence 678899988885 5555 89999988766 44555555555543
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=97.93 Aligned_cols=107 Identities=7% Similarity=0.023 Sum_probs=78.1
Q ss_pred EEEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhh-cCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 165 KLINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN-SGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 165 ~l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~-~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
.+...+++.+...-. .++++||+||++||++ |+.+.|.+.++.+++..+ ...++.++.|++|.+
T Consensus 16 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~------------- 81 (127)
T 3h79_A 16 RVVELTDETFDSIVMDPEKDVFVLYYVPWSRH-SVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY------------- 81 (127)
T ss_dssp CCEECCTTTHHHHHTCTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-------------
T ss_pred ceEECChhhHHHHHhCCCCCEEEEEECCccHH-HHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-------------
Confidence 345556666543322 4899999999999998 999999999999988643 123577777776521
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE-EEeCCCCChhHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV-KFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv-~~~~~~~~~~~l~~~l~~ 314 (321)
..+.+.|+|...|+ ++++++.+++. ..+.|..+.+.+.+.|.+
T Consensus 82 ---------------~~l~~~~~v~~~Pt--------------~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 82 ---------------PDVIERMRVSGFPT--------------MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp ---------------HHHHHHTTCCSSSE--------------EEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred ---------------HhHHHhcCCccCCE--------------EEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 35678899998887 78887777653 456688887777766654
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-12 Score=102.94 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=77.2
Q ss_pred EEEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 165 KLINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 165 ~l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
.+.+.+++.+...-. .+|++||+||++||++ |..+.|.|.+++++++++ .++.++.|++|.+.
T Consensus 8 ~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~--~~~~~~~vd~~~~~------------- 71 (133)
T 2dj3_A 8 PVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGH-CKQLEPIYTSLGKKYKGQ--KDLVIAKMDATAND------------- 71 (133)
T ss_dssp SSEECCTTTCCCCCTCTTSEEEEEECCTTCSH-HHHHHHHHHHHHHHHTTS--SSEEEEEECTTTSC-------------
T ss_pred ceEEEcCCCHHHHhccCCCcEEEEEECCCChh-HHHHHHHHHHHHHHhcCC--CCEEEEEecCCcCH-------------
Confidence 345556666654433 4899999999999998 999999999999999753 25776666654210
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE-EeC-CCCChhHHHHHHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK-FFG-KNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~-~~~-~~~~~~~l~~~l~~~L~~ 318 (321)
.+.+.|+|..+|+ +++++++|++.. .+. +..+.+++.+.|.+.+..
T Consensus 72 ---------------~~~~~~~v~~~Pt--------------~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~ 119 (133)
T 2dj3_A 72 ---------------ITNDQYKVEGFPT--------------IYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATK 119 (133)
T ss_dssp ---------------CCCSSCCCSSSSE--------------EEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSS
T ss_pred ---------------HHHhhcCCCcCCE--------------EEEEeCCCcccceEecCCCcCHHHHHHHHHHhccc
Confidence 1234577777776 889988776532 344 557888888888877653
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=94.28 Aligned_cols=89 Identities=21% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++++||+||++||++ |....|.+.++.+++.++ ..++.++.|++|.+ .++
T Consensus 21 ~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~~----------------------------~~l 70 (111)
T 3uvt_A 21 EGITFIKFYAPWCGH-CKTLAPTWEELSKKEFPG-LAGVKIAEVDCTAE----------------------------RNI 70 (111)
T ss_dssp SSEEEEEEECSSCHH-HHHHHHHHHHHHTCCCCC--CCEEEEEEETTTC----------------------------HHH
T ss_pred CCcEEEEEECCCChh-HHHhhHHHHHHHHHhhcc-CCceEEEEEecccc----------------------------HhH
Confidence 889999999999998 999999999998877543 23577777776521 236
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+
T Consensus 71 ~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 71 CSKYSVRGYPT--------------LLLF-RGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp HHHTTCCSSSE--------------EEEE-ETTEEEEEECSCCSHHHHHHHHHH
T ss_pred HHhcCCCcccE--------------EEEE-eCCcEEEeccCCcCHHHHHHHHHh
Confidence 78899988885 4444 899999999888888887777665
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=93.79 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=67.2
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
++..+|+++|+||++||++ |....|.+.++.+++. ++.++.|++|..
T Consensus 15 ~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~--------------------------- 61 (104)
T 2vim_A 15 NENKGRLIVVDFFAQWCGP-CRNIAPKVEALAKEIP-----EVEFAKVDVDQN--------------------------- 61 (104)
T ss_dssp HTTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTTC---------------------------
T ss_pred HhcCCCeEEEEEECCCCHH-HHHhhHHHHHHHHHCC-----CCEEEEEeccCC---------------------------
Confidence 3447899999999999998 9999999999988874 366677776521
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|++...|+ +++ .++|+++.++.| .+.+++.+.|.++
T Consensus 62 -~~~~~~~~v~~~Pt--------------~~~-~~~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 62 -EEAAAKYSVTAMPT--------------FVF-IKDGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp -HHHHHHTTCCSSSE--------------EEE-EETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred -HHHHHHcCCccccE--------------EEE-EeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence 34677899888885 444 469999988877 5776666655543
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=95.00 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=70.2
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
..|+++||+||++||++ |....+.|+++.+++. ++.++.|++|.. .
T Consensus 24 ~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~----------------------------~ 69 (113)
T 1ti3_A 24 GSQKLIVVDFTASWCPP-CKMIAPIFAELAKKFP-----NVTFLKVDVDEL----------------------------K 69 (113)
T ss_dssp TSSSEEEEEEECSSCHH-HHHHHHHHHHHHHHCS-----SEEEEEEETTTC----------------------------H
T ss_pred hcCCeEEEEEECCCCHH-HHHHHHHHHHHHHhCC-----CcEEEEEEcccc----------------------------H
Confidence 46899999999999998 9999999999988874 477777776521 2
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.+++.|++...|+ ++++ ++|+++.++.| .+.+++.+.|.+++.
T Consensus 70 ~~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 70 AVAEEWNVEAMPT--------------FIFL-KDGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp HHHHHHHCSSTTE--------------EEEE-ETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCcccE--------------EEEE-eCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 4577788888885 5444 79999988877 577888888877764
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=96.19 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+||++||+||++||++ |....|.|+++.+++. ++.++.|++|.+ .+
T Consensus 29 ~~k~vvv~F~a~wC~~-C~~~~p~l~~~~~~~~-----~v~~~~vd~~~~----------------------------~~ 74 (114)
T 2oe3_A 29 QNDKLVIDFYATWCGP-CKMMQPHLTKLIQAYP-----DVRFVKCDVDES----------------------------PD 74 (114)
T ss_dssp HCSEEEEEEECTTCHH-HHHTHHHHHHHHHHCT-----TSEEEEEETTTC----------------------------HH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHCC-----CCEEEEEECCCC----------------------------HH
Confidence 5899999999999998 9999999999988875 266677776521 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
++++|++...|+ +++.++|+++.++.|.. .+++.+.|
T Consensus 75 l~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G~~-~~~l~~~l 111 (114)
T 2oe3_A 75 IAKECEVTAMPT---------------FVLGKDGQLIGKIIGAN-PTALEKGI 111 (114)
T ss_dssp HHHHTTCCSBSE---------------EEEEETTEEEEEEESSC-HHHHHHHH
T ss_pred HHHHCCCCcccE---------------EEEEeCCeEEEEEeCCC-HHHHHHHH
Confidence 678899998885 45569999998887765 55555444
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=98.83 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.+.++.+++.+ ++.++.|++|.. .+
T Consensus 20 ~~~~~lv~f~a~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~~----------------------------~~ 66 (122)
T 3aps_A 20 GKTHWVVDFYAPWCGP-CQNFAPEFELLARMIKG----KVRAGKVDCQAY----------------------------PQ 66 (122)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEeCcCC----------------------------HH
Confidence 4789999999999998 99999999999999864 477777776531 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC---CCCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG---KNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~---~~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|++...|+ +++++++|.+....+ +..+.+++.+.|.+++++.
T Consensus 67 ~~~~~~v~~~Pt--------------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 115 (122)
T 3aps_A 67 TCQKAGIKAYPS--------------VKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETL 115 (122)
T ss_dssp HHHHTTCCSSSE--------------EEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCccce--------------EEEEeCCCccceeeccccCcCCHHHHHHHHHHHHHhh
Confidence 678899988887 888988887433222 2378889999998888754
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=94.28 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.++++.+++. ++.++.|++|. ...
T Consensus 27 ~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~~~~~~v~~~~----------------------------~~~ 72 (118)
T 2vm1_A 27 TGKLVIIDFTASWCGP-CRVIAPVFAEYAKKFP-----GAIFLKVDVDE----------------------------LKD 72 (118)
T ss_dssp HTCCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTT----------------------------SHH
T ss_pred CCCEEEEEEECCCCHh-HHHHhHHHHHHHHHCC-----CcEEEEEEccc----------------------------CHH
Confidence 4899999999999998 9999999999998875 36666677542 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|++...|+ ++++ ++|+++.++.| .+.+++.+.|.++++.
T Consensus 73 ~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 73 VAEAYNVEAMPT--------------FLFI-KDGEKVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp HHHHTTCCSBSE--------------EEEE-ETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred HHHHcCCCcCcE--------------EEEE-eCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence 678899988885 4444 89999988777 5788888888877654
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=98.59 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=75.3
Q ss_pred EEEcCCCCeeecc-ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhc-CCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 165 KLINHDGKNVTEK-DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS-GIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 165 ~l~d~~G~~vsLs-d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~-g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
.+.+.+++.+... .-++|++||+||++||++ |..+.|.+.++.+++++.. ..++.++.|++|.+
T Consensus 8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~------------- 73 (121)
T 2djj_A 8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGH-CKALAPKYEELGALYAKSEFKDRVVIAKVDATAN------------- 73 (121)
T ss_dssp SSEECCTTTTTTSSSCTTSCEEEEEECSSCTT-HHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-------------
T ss_pred CeEEecccCHHHHhhcCCCCEEEEEECCCCHh-HHHhhHHHHHHHHHHhhcccCCceEEEEEECccc-------------
Confidence 3455667766544 246899999999999998 9999999999999997520 01466677766521
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~~l~~~L 316 (321)
. + .+ ++...|+ +++++++|++ +..+.+..+.+++.+.|.+.+
T Consensus 74 -----~-~----------~~--~v~~~Pt--------------~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 74 -----D-V----------PD--EIQGFPT--------------IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp -----C-C----------SS--CCSSSSE--------------EEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred -----c-c----------cc--ccCcCCe--------------EEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence 0 1 11 6666666 8999988885 566777778877777776654
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=99.14 Aligned_cols=91 Identities=8% Similarity=0.087 Sum_probs=75.6
Q ss_pred CCCeEEEEEecCC--CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFGFTH--CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~Fwatw--Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.+++|||+||++| |++ |++..|.|.++.++|.++ .+.++-|+ .|..
T Consensus 33 ~~~~vlVdF~a~~crCgp-Ck~iaPvleela~e~~g~---~v~~~KVd----------------------------vDe~ 80 (140)
T 2qgv_A 33 QAPDGVVLLSSDPKRTPE-VSDNPVMIGELLHEFPDY---TWQVAIAD----------------------------LEQS 80 (140)
T ss_dssp TCSSEEEEECCCTTTCTT-TTHHHHHHHHHHTTCTTS---CCEEEECC----------------------------HHHH
T ss_pred CCCCEEEEEeCCcccCCc-HHHHHhHHHHHHHHcCCC---eEEEEEEE----------------------------CCCC
Confidence 4678999999999 998 999999999999988632 26666555 4556
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.+++.+|||..+|+ +++-++|+++.+..|..+.+++.+.|.+.++
T Consensus 81 ~~lA~~ygV~sIPT---------------lilFk~G~~v~~~~G~~~k~~l~~~i~~~l~ 125 (140)
T 2qgv_A 81 EAIGDRFGAFRFPA---------------TLVFTGGNYRGVLNGIHPWAELINLMRGLVE 125 (140)
T ss_dssp HHHHHHHTCCSSSE---------------EEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred HHHHHHcCCccCCE---------------EEEEECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence 78899999999994 6777999999999999998889888887763
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=97.68 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=71.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |....|.+.++.+++.+ ++.++.|++|.. ..
T Consensus 29 ~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~v~~~~~----------------------------~~ 75 (121)
T 2i1u_A 29 SNKPVLVDFWATWCGP-CKMVAPVLEEIATERAT----DLTVAKLDVDTN----------------------------PE 75 (121)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCcEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEECCCC----------------------------HH
Confidence 4799999999999998 99999999999998864 377777776531 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+++.
T Consensus 76 ~~~~~~i~~~Pt--------------~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l~ 118 (121)
T 2i1u_A 76 TARNFQVVSIPT--------------LILF-KDGQPVKRIVGAKGKAALLRELSDVVP 118 (121)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred HHHhcCCCcCCE--------------EEEE-ECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 678899988885 5555 699999988888888777776665543
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-11 Score=105.92 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=81.1
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
+...+++.+.....+||++||+||++||++ |+.+.|.|.+++++++++ +.++.++.|++|..
T Consensus 17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~-C~~~~p~~~~~~~~~~~~-~~~~~~~~vd~~~~---------------- 78 (241)
T 3idv_A 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGH-CKQFAPEYEKIANILKDK-DPPIPVAKIDATSA---------------- 78 (241)
T ss_dssp EEEECTTTHHHHHTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHTS-SSCCCEEEEETTTC----------------
T ss_pred cEEecccCHHHHHhcCCeEEEEEECCCCHH-HHHhhHHHHHHHHHHhhc-CCceEEEEEeccCC----------------
Confidence 345566666554457999999999999998 999999999999999865 34477777765421
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
..+++.|+|...|+ +++++ +|+++. +.+..+.+++.+.+.+.+.
T Consensus 79 ------------~~l~~~~~v~~~Pt--------------~~~~~-~g~~~~-~~g~~~~~~l~~~i~~~~~ 122 (241)
T 3idv_A 79 ------------SVLASRFDVSGYPT--------------IKILK-KGQAVD-YEGSRTQEEIVAKVREVSQ 122 (241)
T ss_dssp ------------HHHHHHTTCCSSSE--------------EEEEE-TTEEEE-CCSCSCHHHHHHHHHHHHS
T ss_pred ------------HHHHHhcCCCcCCE--------------EEEEc-CCCccc-ccCcccHHHHHHHHhhccC
Confidence 35688899998886 66665 677764 6788888888888877654
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=94.84 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |....|.|.++.+++. ++.++.|++|. ..+
T Consensus 18 ~~~~~vv~f~a~wC~~-C~~~~~~l~~~~~~~~-----~v~~~~vd~~~----------------------------~~~ 63 (110)
T 2l6c_A 18 GLSDAIVFFHKNLCPH-CKNMEKVLDKFGARAP-----QVAISSVDSEA----------------------------RPE 63 (110)
T ss_dssp TCSEEEEEEECSSCST-HHHHHHHHHHHHTTCT-----TSCEEEEEGGG----------------------------CHH
T ss_pred cCCCEEEEEECCCCHh-HHHHHHHHHHHHHHCC-----CcEEEEEcCcC----------------------------CHH
Confidence 4789999999999998 9999999999887764 35556666542 234
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|++...|+ ++++ ++|+++.++.|..+.+++.+.|.+.
T Consensus 64 l~~~~~v~~~Pt--------------~~~~-~~G~~v~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 64 LMKELGFERVPT--------------LVFI-RDGKVAKVFSGIMNPRELQALYASI 104 (110)
T ss_dssp HHHHTTCCSSCE--------------EEEE-ESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred HHHHcCCcccCE--------------EEEE-ECCEEEEEEcCCCCHHHHHHHHHHH
Confidence 678899998886 7777 8999999988888888777666543
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=98.45 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=71.6
Q ss_pred EcCCCCeeecc-cc--CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 167 INHDGKNVTEK-DF--LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 167 ~d~~G~~vsLs-d~--kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
.+.+|...++. .+ .+|++||+||++||++ |....|.|.++.+++ . ++.++.|++|..
T Consensus 6 ~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~-C~~~~~~l~~l~~~~-~----~v~~~~vd~~~~-------------- 65 (118)
T 2f51_A 6 VHFNGTHEALLNRIKEAPGLVLVDFFATWCGP-CQRLGQILPSIAEAN-K----DVTFIKVDVDKN-------------- 65 (118)
T ss_dssp EEECSCHHHHHHHHHHCSSCEEEEEECTTCHH-HHHHHHHHHHHHHHC-T----TSEEEEEETTTC--------------
T ss_pred eEecCCHHHHHHHHHhCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHC-C----CeEEEEEECCCC--------------
Confidence 44555555554 23 4899999999999998 999999999999888 2 467777776531
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC---CCeEEEEeCCCCChhHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP---KMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~---dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
.++++.|++...|+ +++++. +|+++.++.|.. .+++.+.+.
T Consensus 66 --------------~~~~~~~~i~~~Pt--------------~~~~~~~~~~G~~~~~~~G~~-~~~l~~~~~ 109 (118)
T 2f51_A 66 --------------GNAADAYGVSSIPA--------------LFFVKKEGNEIKTLDQFVGAD-VSRIKADIE 109 (118)
T ss_dssp --------------HHHHHHTTCCSSSE--------------EEEEEEETTEEEEEEEEESCC-HHHHHHHHH
T ss_pred --------------HHHHHhcCCCCCCE--------------EEEEeCCCCcceEEEeecCCC-HHHHHHHHH
Confidence 34678899988887 777765 499999887655 344444443
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-11 Score=108.64 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=80.3
Q ss_pred eEEEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 164 FKLINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 164 f~l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
-.....+.+.+.-.-+ .+|++||+||++||++ |+.+.|.|.+++++++++ +.++.|++|...
T Consensus 12 ~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~~~----v~~~~vd~d~~~------------ 74 (222)
T 3dxb_A 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGP-CKMIAPILDEIADEYQGK----LTVAKLNIDQNP------------ 74 (222)
T ss_dssp CCCEECCTTTHHHHHTTCSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----CEEEEEETTTCT------------
T ss_pred CCceeCCHHHHHHHHHhcCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhcCC----cEEEEEECCCCH------------
Confidence 3444555555543212 5899999999999998 999999999999999753 777788876421
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.+++.|+|...|+ ++++ ++|+++..+.|..+.+++.+.|.++++
T Consensus 75 ----------------~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~ 118 (222)
T 3dxb_A 75 ----------------GTAPKYGIRGIPT--------------LLLF-KNGEVAATKVGALSKGQLKEFLDANLA 118 (222)
T ss_dssp ----------------TTGGGGTCCSBSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred ----------------HHHHHcCCCcCCE--------------EEEE-ECCeEEEEeccccChHHHHHHHHhhcc
Confidence 2356789988885 5555 699999998898898888888887764
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-12 Score=100.95 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCeEEEEEecCCCC--------------CCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 180 LGKWTVIYFGFTHCP--------------DICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 180 kGK~vLL~FwatwCp--------------~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
.||++||+||++||+ + |....|.++++.+++.+ ++.++.|++|.+
T Consensus 20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~-C~~~~p~~~~l~~~~~~----~~~~~~vd~d~~---------------- 78 (123)
T 1oaz_A 20 ADGAILVDFWAEWCGPIEESDDRRYDLVGP-CKMIAPILDEIADEYQG----KLTVAKLNIDQN---------------- 78 (123)
T ss_dssp CSSEEEEEEECSSCSCBSSSTTSCCSCCCC-CCTTHHHHTTC-----------CEEEEEETTSC----------------
T ss_pred CCCeEEEEEECCCCccccccccccccCCCC-cHHHHHHHHHHHHHhcC----CeEEEEEECCCC----------------
Confidence 589999999999999 9 99999999999988864 377777777642
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|+|...|+ ++++ ++|+++.++.|..+.+++.+.|.++
T Consensus 79 ------------~~l~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 79 ------------PGTAPKYGIRGIPT--------------LLLF-KNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp ------------TTTGGGGTCCBSSE--------------EEEE-ESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred ------------HHHHHHcCCCccCE--------------EEEE-ECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 13467899988887 7777 9999999888888877777666543
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-12 Score=99.25 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=74.9
Q ss_pred cCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 168 NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 168 d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
..+++.+...--++|++||+||++||++ |....|.+.++.+++++. +.++.++.|+++.+
T Consensus 11 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~~~~~~~~~~~~-~~~v~~~~vd~~~~------------------ 70 (120)
T 1mek_A 11 VLRKSNFAEALAAHKYLLVEFYAPWCGH-CKALAPEYAKAAGKLKAE-GSEIRLAKVDATEE------------------ 70 (120)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECSSCST-TSTTHHHHHHHHHTTTTT-CCCCBCEEEETTTC------------------
T ss_pred EechhhHHHHHccCCeEEEEEECCCCHH-HHHhhHHHHHHHHHHhcc-CCcEEEEEEcCCCC------------------
Confidence 3444444322225899999999999998 999999999999998764 34566666665421
Q ss_pred eeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE--EEeCCCCChhHHHHHHHHHH
Q 020776 248 IGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV--KFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 248 ~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~~~~~~~~~~~l~~~l~~~L 316 (321)
..+.+.|++...|+ ++++ ++|+++ ..+.|..+.+++.+.|.+++
T Consensus 71 ----------~~~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 71 ----------SDLAQQYGVRGYPT--------------IKFF-RNGDTASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp ----------CSSHHHHTCCSSSE--------------EEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred ----------HHHHHHCCCCcccE--------------EEEE-eCCCcCCcccccCccCHHHHHHHHHhcc
Confidence 13467788888886 7777 688876 77778788777777666543
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=100.88 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=66.7
Q ss_pred cCCCCeee--ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 168 NHDGKNVT--EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 168 d~~G~~vs--Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
..+.+.+. +.+-+++++||+||++||++ |..+.|.++++.+++++. ++.++.|++|..
T Consensus 11 ~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~-C~~~~p~~~~l~~~~~~~---~v~~~~vd~~~~---------------- 70 (137)
T 2dj0_A 11 YFNDKTIDEELERDKRVTWIVEFFANWSND-CQSFAPIYADLSLKYNCT---GLNFGKVDVGRY---------------- 70 (137)
T ss_dssp ECCTTHHHHHHHHSTTSCEEEEECCTTCST-TTTTHHHHHHHHHHHCSS---SCEEEECCTTTC----------------
T ss_pred EccHhhHHHHHhcCCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCCC---CeEEEEEeCccC----------------
Confidence 33444433 33445679999999999998 999999999999999743 476666665421
Q ss_pred CceeecCChHHHHHHHHHcCce------EeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVY------YMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~------~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
..+++.|++. ..|+ ++++ ++|+++.++.+..+.+++
T Consensus 71 ------------~~~~~~~~v~~~~~~~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l 112 (137)
T 2dj0_A 71 ------------TDVSTRYKVSTSPLTKQLPT--------------LILF-QGGKEAMRRPQIDKKGRA 112 (137)
T ss_dssp ------------HHHHHHTTCCCCSSSSCSSE--------------EEEE-SSSSEEEEESCBCSSSCB
T ss_pred ------------HHHHHHccCcccCCcCCCCE--------------EEEE-ECCEEEEEecCcCchHHH
Confidence 2346667776 6664 6666 799999888776665544
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-12 Score=97.10 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=68.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+++|+||++||++ |....+.++++.+++.+ ++.++.|++|. ...
T Consensus 18 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~v~~~~----------------------------~~~ 64 (106)
T 2yj7_A 18 SDKPVLVDFWAPWCGP-CRMIAPIIEELAKEYEG----KVKVVKVNVDE----------------------------NPN 64 (106)
Confidence 4789999999999998 99999999999988864 36666665442 124
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.++
T Consensus 65 ~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 65 TAAQYGIRSIPT--------------LLLF-KNGQVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 567888888886 6666 8999998887777777777666554
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-10 Score=99.59 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+.+.|.++++++++.++...++.++.|++|. ...
T Consensus 133 ~~~~~~v~F~a~wC~~-C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~----------------------------~~~ 183 (226)
T 1a8l_A 133 DQDVRILVFVTPTCPY-CPLAVRMAHKFAIENTKAGKGKILGDMVEAIE----------------------------YPE 183 (226)
T ss_dssp CSCEEEEEEECSSCTT-HHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG----------------------------CHH
T ss_pred CCCcEEEEEeCCCCCc-cHHHHHHHHHHHHhcccccCCcEEEEEEEccc----------------------------CHH
Confidence 4556699999999998 99999999999999974211257777777542 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|+|...|+ +++.++|+++..+.|..+.+++.+.|.+++
T Consensus 184 l~~~~~v~~~Pt---------------~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 184 WADQYNVMAVPK---------------IVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp HHHHTTCCSSCE---------------EEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHhCCCcccCe---------------EEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence 678899998885 445579999988888888888877777665
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=116.49 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=87.0
Q ss_pred EEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 166 LINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 166 l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
+...+++.+...-. .+|++||+||++||++ |+.+.|.+.++++++++. +..+.++.|++|.
T Consensus 14 V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~p-Ck~~~P~l~~la~~~~~~-~~~v~~~~VD~d~---------------- 75 (519)
T 3t58_A 14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGH-AIAFAPTWKELANDVKDW-RPALNLAVLDCAE---------------- 75 (519)
T ss_dssp SEEECTTTHHHHHSSCSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHGGG-TTTEEEEEEETTS----------------
T ss_pred cEECChHHHHHHHHhCCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhhCc-CCcEEEEEEECCc----------------
Confidence 34445555543222 3699999999999998 999999999999999863 3368888888752
Q ss_pred CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC---CCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 245 PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP---KMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 245 ~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~---dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
|...++++.|+|..+|+ ++++++ +|+++..+.+..+.+.+.+.|.+.+++
T Consensus 76 ----------d~~~~l~~~~~V~~~PT--------------l~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~ 128 (519)
T 3t58_A 76 ----------ETNSAVCREFNIAGFPT--------------VRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128 (519)
T ss_dssp ----------GGGHHHHHHTTCCSBSE--------------EEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTT
T ss_pred ----------cccHHHHHHcCCcccCE--------------EEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhh
Confidence 23356788999999998 899997 788777777778999999999888865
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=102.69 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |+.+.|.+.++++++.+. +..+.++.|++|.+ ....
T Consensus 29 ~~~~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~~~-~~~v~~~~vd~~~~--------------------------~~~~ 80 (244)
T 3q6o_A 29 SRSAWAVEFFASWCGH-CIAFAPTWXALAEDVKAW-RPALYLAALDCAEE--------------------------TNSA 80 (244)
T ss_dssp CSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTGGG-TTTEEEEEEETTST--------------------------TTHH
T ss_pred CCCeEEEEEECCcCHH-HHHHHHHHHHHHHHHHhc-cCcEEEEEEeCCch--------------------------hhHH
Confidence 3699999999999998 999999999999999863 23688888887531 2256
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcC-----CCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-----KMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-----dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ ++++++ +|..+ .+.+ .+.+.+.+.|.+.+++.
T Consensus 81 l~~~~~v~~~Pt--------------~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~ 129 (244)
T 3q6o_A 81 VCRDFNIPGFPT--------------VRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESH 129 (244)
T ss_dssp HHHHTTCCSSSE--------------EEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCccCE--------------EEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhc
Confidence 788899998887 888886 25555 4544 68899999998888753
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-11 Score=104.14 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=65.7
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHH--HHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAV--DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~--~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
.+...||+|||+||++||++ |....|.+.+.. .++.+. ++ +.|.+|.+...
T Consensus 39 ~A~~~~KpVlV~F~A~WC~~-Ck~m~p~~~~~~~~~~~~~~---~f--v~V~vD~e~~~--------------------- 91 (151)
T 3ph9_A 39 YAQKSKKPLMVIHHLEDCQY-SQALKKVFAQNEEIQEMAQN---KF--IMLNLMHETTD--------------------- 91 (151)
T ss_dssp HHHHHTCCEEEEECCTTCHH-HHHHHHHHHHCHHHHHHHHH---TC--EEEEESSCCSC---------------------
T ss_pred HHHHcCCcEEEEEECCCCHh-HHHHHHHHhcCHHHHHHhhc---Ce--EEEEecCCchh---------------------
Confidence 33346999999999999998 999999888642 222221 23 55666522110
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC-------C---ChhHHHHHHHHHHHHHh
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN-------N---DVNSLADGIIKEIKQYK 320 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~-------~---~~~~l~~~l~~~L~~~k 320 (321)
.+..|++.++|+ ++++|++|+++.+..|. . +.+++.+.++++++.++
T Consensus 92 ------~~~~~~v~~~PT--------------~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~ 148 (151)
T 3ph9_A 92 ------KNLSPDGQYVPR--------------IMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQ 148 (151)
T ss_dssp ------GGGCTTCCCSSE--------------EEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred ------hHhhcCCCCCCE--------------EEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence 133567777776 99999999999987776 3 34556666666666543
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=86.07 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=63.0
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
.++|++||++||++ |....|.|+++.+++.+ ++.++.|++|.+. +++
T Consensus 3 ~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~vd~~~~~----------------------------~~~ 49 (85)
T 1fo5_A 3 KVKIELFTSPMCPH-CPAAKRVVEEVANEMPD----AVEVEYINVMENP----------------------------QKA 49 (85)
T ss_dssp CEEEEEEECCCSSC-CCTHHHHHHHHHHHCSS----SEEEEEEESSSSC----------------------------CTT
T ss_pred ceEEEEEeCCCCCc-hHHHHHHHHHHHHHcCC----ceEEEEEECCCCH----------------------------HHH
Confidence 57899999999998 99999999999988863 4888888876321 235
Q ss_pred HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 262 RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 262 ~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+.|++...|+ +++ +|++ .+.|..+.+++.+.|.++
T Consensus 50 ~~~~v~~~Pt--------------~~~---~G~~--~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 50 MEYGIMAVPT--------------IVI---NGDV--EFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TSTTTCCSSE--------------EEE---TTEE--ECCSSSSSHHHHHHHHHH
T ss_pred HHCCCcccCE--------------EEE---CCEE--eeecCCCHHHHHHHHHHh
Confidence 6788888885 444 8988 566777777777777654
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.7e-11 Score=101.37 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=64.3
Q ss_pred eEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHH---HHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQK---LAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 164 f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~---L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
+.+.....+.+..+...||+|||+||++||++ |..+.+. ..++.+.+.++ +++|.|+.| +.++....|.
T Consensus 22 v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~-Ck~m~~~~f~~~~va~~l~~~----fv~ikVD~d---e~~~l~~~y~ 93 (173)
T 3ira_A 22 VDWYPWGEEAFEKARKENKPVFLSIGYSTCHW-CHMMAHESFEDEEVAGLMNEA----FVSIKVDRE---ERPDIDNIYM 93 (173)
T ss_dssp SCCBCSSHHHHHHHHHHTCCEEEEEECTTCHH-HHHHHHHTTTCHHHHHHHHHH----CEEEEEETT---TCHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHhCCCEEEecccchhHh-hccccccccCCHHHHHHHHhc----CceeeeCCc---ccCcHHHHHH
Confidence 34444445556666667999999999999998 9998873 34566666543 555555544 2344333332
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+. +...+|+.+.|+ ++++|++|+++..
T Consensus 94 ~~-----------------~q~~~gv~g~Pt--------------~v~l~~dG~~v~~ 120 (173)
T 3ira_A 94 TV-----------------CQIILGRGGWPL--------------NIIMTPGKKPFFA 120 (173)
T ss_dssp HH-----------------HHHHHSCCCSSE--------------EEEECTTSCEEEE
T ss_pred HH-----------------HHHHcCCCCCcc--------------eeeECCCCCceee
Confidence 21 122368888887 9999999999986
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=95.91 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=63.0
Q ss_pred CCeEEEEEecCC--CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 181 GKWTVIYFGFTH--CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 181 GK~vLL~Fwatw--Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
.+.+||+||++| |++ |....|.|.++.++| ++ ..+.++.|++ |...
T Consensus 34 ~~~~vv~f~~~~~~C~~-C~~l~P~l~~la~~~-~~--v~~~~~~Vd~----------------------------d~~~ 81 (142)
T 2es7_A 34 VGDGVILLSSDPRRTPE-VSDNPVMIAELLREF-PQ--FDWQVAVADL----------------------------EQSE 81 (142)
T ss_dssp CCSEEEEECCCSCC-----CCHHHHHHHHHHTC-TT--SCCEEEEECH----------------------------HHHH
T ss_pred CCCEEEEEECCCCCCcc-HHHHHHHHHHHHHHh-cc--cceeEEEEEC----------------------------CCCH
Confidence 345788999887 998 999999999999988 33 2311555553 3345
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++++|+|..+|+ ++++ ++|+++.++.|..+.+++.+.|.+.++
T Consensus 82 ~la~~~~V~~iPT--------------~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~ 125 (142)
T 2es7_A 82 AIGDRFNVRRFPA--------------TLVF-TDGKLRGALSGIHPWAELLTLMRSIVD 125 (142)
T ss_dssp HHHHTTTCCSSSE--------------EEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCcCCe--------------EEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 6788999999997 7777 999999998888888888888887764
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=86.60 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=61.1
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHH
Q 020776 183 WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIAR 262 (321)
Q Consensus 183 ~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~ 262 (321)
++|++||++||++ |....|.|+++.+++.+ ++.++.|++|.+ .++++
T Consensus 3 ~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~vd~~~~----------------------------~~~~~ 49 (85)
T 1nho_A 3 VNIEVFTSPTCPY-CPMAIEVVDEAKKEFGD----KIDVEKIDIMVD----------------------------REKAI 49 (85)
T ss_dssp CCEEEESCSSSCC-STTHHHHHHHHHHHHCS----SCCEEEECTTTC----------------------------GGGGG
T ss_pred EEEEEEECCCCcc-hHHHHHHHHHHHHHhcC----CeEEEEEECCCC----------------------------HHHHH
Confidence 4689999999998 99999999999998864 366666666531 13467
Q ss_pred HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 263 AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 263 ~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
.|++...|+ +++ +|++ ++.|..+.+++.+.|.+.+
T Consensus 50 ~~~v~~~Pt--------------~~~---~G~~--~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 50 EYGLMAVPA--------------IAI---NGVV--RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp GTCSSCSSE--------------EEE---TTTE--EEECSSCCHHHHHHHHHHC
T ss_pred hCCceeeCE--------------EEE---CCEE--EEccCCCHHHHHHHHHHHh
Confidence 889988885 444 8888 4446667777777776654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.5e-10 Score=91.89 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+||++||+||++||++ |..+.|.|.++.+++. ++.++.|++|..
T Consensus 29 ~~~~vvv~f~a~wC~~-C~~~~p~l~~la~~~~-----~v~~~~vd~~~~------------------------------ 72 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPM-CLVVNQHLSVLARKFP-----ETKFVKAIVNSC------------------------------ 72 (135)
T ss_dssp SSCEEEEEECCTTCHH-HHHHHHHHHHHHHHCS-----SEEEEEECCSSS------------------------------
T ss_pred CCCEEEEEEECCCChH-HHHHHHHHHHHHHHCC-----CcEEEEEEhhcC------------------------------
Confidence 4689999999999998 9999999999988873 477776665421
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
.+.|+|...|+ ++++ ++|+++.++.+..
T Consensus 73 -~~~~~i~~~Pt--------------~~~~-~~G~~v~~~~G~~ 100 (135)
T 2dbc_A 73 -IEHYHDNCLPT--------------IFVY-KNGQIEGKFIGII 100 (135)
T ss_dssp -CSSCCSSCCSE--------------EEEE-SSSSCSEEEESTT
T ss_pred -cccCCCCCCCE--------------EEEE-ECCEEEEEEEeEE
Confidence 03578887775 6666 4999988876654
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-11 Score=96.28 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=69.1
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
..+|++||+||++||++ |....|.|.++.+++. ++.++.|++|.. .
T Consensus 34 ~~~~~~vv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~----------------------------~ 79 (130)
T 1wmj_A 34 EAGKVVIIDFTASWCGP-CRFIAPVFAEYAKKFP-----GAVFLKVDVDEL----------------------------K 79 (130)
T ss_dssp TTTCBCBEECCSSSCSC-SSSSHHHHHHHHHHCT-----TBCCEECCTTTS----------------------------G
T ss_pred hcCCEEEEEEECCCChh-HHHHHHHHHHHHHHCC-----CCEEEEEeccch----------------------------H
Confidence 46899999999999998 9999999999988875 355666665421 2
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
.+.+.|++...|+ +++.++|+++.++.| .+.+++.+.|.++++.
T Consensus 80 ~~~~~~~v~~~Pt---------------~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 80 EVAEKYNVEAMPT---------------FLFIKDGAEADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp GGHHHHTCCSSCC---------------CCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred HHHHHcCCCccce---------------EEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence 3567889988885 445589999888766 5777788777776643
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.5e-09 Score=87.99 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.+|+|||+|++.||.+ |...-... .++.+.+.+ ++++|-+.+| + ++
T Consensus 41 ~~K~vlvd~~a~wC~~-C~~me~~vf~d~~V~~~l~~----~fv~v~~d~~----~----------------------~~ 89 (153)
T 2dlx_A 41 QNKWLMINIQNVQDFA-CQCLNRDVWSNEAVKNIIRE----HFIFWQVYHD----S----------------------EE 89 (153)
T ss_dssp HTCEEEEEEECSCTTT-HHHHHHHTTTCHHHHHHHHH----TEEEEEEESS----S----------------------HH
T ss_pred cCCeEEEEEECCCCHh-HHHHHHHhcCCHHHHHHHHc----CeEEEEEecC----C----------------------Hh
Confidence 4899999999999998 99875544 444444543 3655555542 1 23
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
...+.+.|++...|+ +++||++ |+.+..+.+ .+++++.+.|.+.++++.
T Consensus 90 ~~~l~~~y~v~~~P~--------------~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 90 GQRYIQFYKLGDFPY--------------VSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp HHHHHHHHTCCSSSE--------------EEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCE--------------EEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence 345677888887776 8999998 877766655 899999999999987754
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-09 Score=94.13 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=70.6
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
+++++++|++||++||++ |+...|.++++..++.++...++.+..|.++. .
T Consensus 135 ~~~~~~~vv~F~a~wC~~-C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~----------------------------~ 185 (243)
T 2hls_A 135 SLKGRVHIETIITPSCPY-CPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE----------------------------N 185 (243)
T ss_dssp HCCSCEEEEEEECSSCSS-HHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT----------------------------C
T ss_pred HcCCCcEEEEEECCCCCC-cHHHHHHHHHHHHHcccccCCcEEEEEEECcc----------------------------C
Confidence 567889999999999998 99999999999999853101257766666542 1
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+++.|+|..+|+ +++ +|+++ +.|..+.+++.+.|.+.+..
T Consensus 186 ~~~~~~~~V~~vPt--------------~~i---~G~~~--~~G~~~~~~l~~~l~~~~~~ 227 (243)
T 2hls_A 186 PDIADKYGVMSVPS--------------IAI---NGYLV--FVGVPYEEDFLDYVKSAAEG 227 (243)
T ss_dssp HHHHHHTTCCSSSE--------------EEE---TTEEE--EESCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCeeeCe--------------EEE---CCEEE--EeCCCCHHHHHHHHHHHhhc
Confidence 24577899998886 555 78876 55778888888888887753
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.2e-09 Score=101.60 Aligned_cols=108 Identities=22% Similarity=0.198 Sum_probs=79.5
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhc--CCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS--GIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~--g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
+.+.+++.+...--.++++||+||++||++ |....|.+.++.++++++. ..++.++.|++|.
T Consensus 7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~--------------- 70 (382)
T 2r2j_A 7 ITSLDTENIDEILNNADVALVNFYADWCRF-SQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ--------------- 70 (382)
T ss_dssp -CBCCTTTHHHHHHHCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT---------------
T ss_pred eEECCHHHHHHHHhcCCeEEEEEECCCCHH-HHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc---------------
Confidence 344555555422124799999999999998 9999999999999996431 1247777777542
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE-eCCCCChhHHHHHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF-FGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~-~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++.|+|...|+ ++ +.++|+++.+ |.|..+.+.+.+.+.+.+.
T Consensus 71 -------------~~~l~~~~~v~~~Pt--------------~~-~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (382)
T 2r2j_A 71 -------------HSDIAQRYRISKYPT--------------LK-LFRNGMMMKREYRGQRSVKALADYIRQQKS 117 (382)
T ss_dssp -------------CHHHHHHTTCCEESE--------------EE-EEETTEEEEEECCSCCSHHHHHHHHHHHHS
T ss_pred -------------cHHHHHhcCCCcCCE--------------EE-EEeCCcEeeeeecCcchHHHHHHHHHHhcc
Confidence 145788999999996 44 5578998874 8888899988888887763
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=101.15 Aligned_cols=92 Identities=13% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |..+.|.+.++.+++.++ +.++.|++|.. ....
T Consensus 34 ~~~~vlV~F~A~wC~~-C~~~~p~~~~la~~~~~~----~~~~~v~~d~~--------------------------~~~~ 82 (298)
T 3ed3_A 34 TNYTSLVEFYAPWCGH-CKKLSSTFRKAAKRLDGV----VQVAAVNCDLN--------------------------KNKA 82 (298)
T ss_dssp SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----SEEEEEETTST--------------------------TTHH
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHccCC----cEEEEEEccCc--------------------------cCHH
Confidence 4789999999999998 999999999999999643 66777887632 1256
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCC----------------eEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM----------------EFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG----------------~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|+|...|+ +++++..+ .....|.|..+.+.+.+.+.+.+
T Consensus 83 l~~~~~I~~~Pt--------------~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 83 LCAKYDVNGFPT--------------LMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp HHHHTTCCBSSE--------------EEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred HHHhCCCCccce--------------EEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 788999999887 67776543 13556778888888888776654
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-09 Score=92.11 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=75.3
Q ss_pred CCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 169 HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 169 ~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.+++.+...--.+++++|+||++||++ |....|.+.++.+++.++ +.++.++.|++|.
T Consensus 135 ~~~~~~~~~~~~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~~~-~~~v~~~~vd~~~-------------------- 192 (241)
T 3idv_A 135 LTKENFDEVVNDADIILVEFYAPWCGH-CKKLAPEYEKAAKELSKR-SPPIPLAKVDATA-------------------- 192 (241)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECTTCTG-GGGTHHHHHHHHHHHHTS-SSCCCEEEEETTT--------------------
T ss_pred ccHHHHHHhhccCCeEEEEEECCCCHH-HHHhHHHHHHHHHHHhcc-CCcEEEEEEECCC--------------------
Confidence 344444322225789999999999998 999999999999999865 3346667666542
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
...+++.|+|...|+ +++++ +|+.+. |.|..+.+.+.+.|.+.+
T Consensus 193 --------~~~l~~~~~v~~~Pt--------------~~~~~-~g~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 193 --------ETDLAKRFDVSGYPT--------------LKIFR-KGRPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp --------CHHHHHHTTCCSSSE--------------EEEEE-TTEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred --------CHHHHHHcCCcccCE--------------EEEEE-CCeEEE-ecCCCCHHHHHHHHHhhh
Confidence 134688899998886 55554 688777 678888888888887664
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=87.40 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=59.2
Q ss_pred cccCCCeEEEEEecC-------CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCcee
Q 020776 177 KDFLGKWTVIYFGFT-------HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249 (321)
Q Consensus 177 sd~kGK~vLL~Fwat-------wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~ 249 (321)
.+..||+++|+||++ ||++ |....|.|.++.+++.+ ++.++.|++|. . .. +
T Consensus 20 ~~~~~~~v~v~F~a~~~~~~~~wC~~-C~~~~p~l~~~~~~~~~----~~~~~~vd~~~---~-~~---~---------- 77 (123)
T 1wou_A 20 EQHNGKTIFAYFTGSKDAGGKSWCPD-CVQAEPVVREGLKHISE----GCVFIYCQVGE---K-PY---W---------- 77 (123)
T ss_dssp HTTTTSEEEEEEECCBCTTCCBSCHH-HHHHHHHHHHHGGGCCT----TEEEEEEECCC---H-HH---H----------
T ss_pred HHhCCCEEEEEEEccCCCCCCCcCHH-HHHhhHHHHHHHHHcCC----CcEEEEEECCC---c-hh---h----------
Confidence 344689999999999 9998 99999999999887753 58888888752 1 11 0
Q ss_pred ecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 250 LTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 250 l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
.|....+++.|+|..+|+ ++++++.+++..
T Consensus 78 ----~d~~~~~~~~~~i~~~Pt--------------~~~~~~~~~~~g 107 (123)
T 1wou_A 78 ----KDPNNDFRKNLKVTAVPT--------------LLKYGTPQKLVE 107 (123)
T ss_dssp ----HCTTCHHHHHHCCCSSSE--------------EEETTSSCEEEG
T ss_pred ----hchhHHHHHHCCCCeeCE--------------EEEEcCCceEec
Confidence 123345677899998887 777777455443
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.9e-09 Score=90.55 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=68.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++|++||++||++ |+...|.++++..++. ++.++.|++|. ...
T Consensus 135 ~~~~~~v~F~a~wC~~-C~~~~~~~~~~~~~~~-----~v~~~~vd~~~----------------------------~~~ 180 (229)
T 2ywm_A 135 DIPIEIWVFVTTSCGY-CPSAAVMAWDFALAND-----YITSKVIDASE----------------------------NQD 180 (229)
T ss_dssp CSCEEEEEEECTTCTT-HHHHHHHHHHHHHHCT-----TEEEEEEEGGG----------------------------CHH
T ss_pred CCCeEEEEEECCCCcc-hHHHHHHHHHHHHHCC-----CeEEEEEECCC----------------------------CHH
Confidence 4566689999999998 9999999999988872 47777777542 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ +++ +|++ ..+.|..+.+++.+.|.+.+++.
T Consensus 181 l~~~~~v~~~Pt--------------~~~---~G~~-~~~~G~~~~~~l~~~l~~~~~~~ 222 (229)
T 2ywm_A 181 LAEQFQVVGVPK--------------IVI---NKGV-AEFVGAQPENAFLGYIMAVYEKL 222 (229)
T ss_dssp HHHHTTCCSSSE--------------EEE---GGGT-EEEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccCE--------------EEE---CCEE-EEeeCCCCHHHHHHHHHHHhhhh
Confidence 688899998885 454 7884 55668888888999888887654
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.6e-11 Score=93.02 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=61.2
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
+.++++++.+|++||+||++||++ |..+.|.+.++.+++. .|.+|.+..
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~-C~~~~p~~~~~a~~~~----------~v~~~~~~~-------------------- 51 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPH-CQDQKELFGAAFDQVP----------YVECSPNGP-------------------- 51 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHH-HHHHHHHHGGGGGGSC----------EEESCTTCT--------------------
T ss_pred HhhHHHHhcCCCEEEEEECCCCHH-HHHHHHHHHHHHHhCC----------EEEEecccc--------------------
Confidence 456778888999999999999998 9999999998875442 233332100
Q ss_pred CChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 252 GSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+...+++++|+|..+|+ ++| +|++ +.|..+.+++.+.+
T Consensus 52 --~~~~~~l~~~~~V~~~PT---------------~~i--~G~~---~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 52 --GTPQAQECTEAGITSYPT---------------WII--NGRT---YTGVRSLEALAVAS 90 (106)
T ss_dssp --TSCCCHHHHHTTCCSSSE---------------EEE--TTEE---EESCCCHHHHHHHH
T ss_pred --cchhHHHHHHcCCeEeCE---------------EEE--CCEE---ecCCCCHHHHHHHh
Confidence 011245688999999985 444 7874 55777777665543
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=74.03 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=53.6
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHH
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARA 263 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ 263 (321)
..|+||++||++ |....|.++++.++++. ++.++.|+ ..+++++
T Consensus 2 ~~v~f~a~wC~~-C~~~~~~l~~~~~~~~~----~~~~~~v~-------------------------------~~~~~~~ 45 (77)
T 1ilo_A 2 MKIQIYGTGCAN-CQMLEKNAREAVKELGI----DAEFEKIK-------------------------------EMDQILE 45 (77)
T ss_dssp EEEEEECSSSST-THHHHHHHHHHHHHTTC----CEEEEEEC-------------------------------SHHHHHH
T ss_pred cEEEEEcCCChh-HHHHHHHHHHHHHHcCC----ceEEEEec-------------------------------CHHHHHH
Confidence 468999999998 99999999999888753 46555442 1245778
Q ss_pred cCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC-ChhHHHHH
Q 020776 264 YRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN-DVNSLADG 311 (321)
Q Consensus 264 ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~-~~~~l~~~ 311 (321)
|++...|+ +++ +|+++.. |.. +.+++.+.
T Consensus 46 ~~v~~~Pt--------------~~~---~G~~~~~--G~~~~~~~l~~~ 75 (77)
T 1ilo_A 46 AGLTALPG--------------LAV---DGELKIM--GRVASKEEIKKI 75 (77)
T ss_dssp HTCSSSSC--------------EEE---TTEEEEC--SSCCCHHHHHHH
T ss_pred CCCCcCCE--------------EEE---CCEEEEc--CCCCCHHHHHHH
Confidence 99999886 444 8998876 554 66655543
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-09 Score=84.74 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=56.0
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++|||+||++||++ |+...|.|.++.++|. ++.++-|++|. .
T Consensus 23 ~~~vvv~F~a~wc~~-C~~~~p~l~~la~~~~-----~v~f~kvd~d~-------------------------------~ 65 (118)
T 3evi_A 23 DVWVIIHLYRSSIPM-CLLVNQHLSLLARKFP-----ETKFVKAIVNS-------------------------------C 65 (118)
T ss_dssp TCEEEEEEECTTSHH-HHHHHHHHHHHHHHCT-----TSEEEEEEGGG-------------------------------T
T ss_pred CCeEEEEEeCCCChH-HHHHHHHHHHHHHHCC-----CCEEEEEEhHH-------------------------------h
Confidence 459999999999998 9999999999999885 35666666541 0
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
+..|+|...| ++++-++|+.+.++.|..
T Consensus 66 ~~~~~v~~~P---------------T~~~fk~G~~v~~~~G~~ 93 (118)
T 3evi_A 66 IQHYHDNCLP---------------TIFVYKNGQIEAKFIGII 93 (118)
T ss_dssp STTCCGGGCS---------------EEEEEETTEEEEEEESTT
T ss_pred HHHCCCCCCC---------------EEEEEECCEEEEEEeChh
Confidence 3568888888 467778999999876643
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-09 Score=96.24 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=55.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++|||+||++||++ |..+.|.|.+++.+|. ++.++.|++|. ..
T Consensus 132 ~~k~VvV~Fya~wC~~-Ck~l~p~l~~La~~~~-----~v~f~kVd~d~-----------------------------~~ 176 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKG-CDALNSSLICLAAEYP-----MVKFCKIKASN-----------------------------TG 176 (245)
T ss_dssp TTCEEEEEEECTTSTT-HHHHHHHHHHHHHHCT-----TSEEEEEEHHH-----------------------------HC
T ss_pred CCCEEEEEEECCCChH-HHHHHHHHHHHHHHCC-----CCEEEEEeCCc-----------------------------HH
Confidence 5899999999999998 9999999999999885 35666665420 11
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
++..|+|...|+ ++++ ++|+++..+.|.
T Consensus 177 l~~~~~I~~~PT--------------ll~~-~~G~~v~~~vG~ 204 (245)
T 1a0r_P 177 AGDRFSSDVLPT--------------LLVY-KGGELLSNFISV 204 (245)
T ss_dssp CTTSSCTTTCSE--------------EEEE-ETTEEEEEETTG
T ss_pred HHHHCCCCCCCE--------------EEEE-ECCEEEEEEeCC
Confidence 345688888775 5544 699999887664
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=84.16 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=83.9
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----------------------
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP---------------------- 228 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp---------------------- 228 (321)
+....+.+-.+|++|+.||..|||+ |....+.|.++.+++.+ +++.+..+.+..
T Consensus 12 ~~~~~~G~~~a~v~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~---v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~ 87 (175)
T 3gyk_A 12 PNAPVLGNPEGDVTVVEFFDYNCPY-CRRAMAEVQGLVDADPN---VRLVYREWPILGEGSDFAARAALAARQQGKYEAF 87 (175)
T ss_dssp TTSCEEECTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHCTT---EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHH
T ss_pred CCCCCcCCCCCCEEEEEEECCCCcc-HHHHHHHHHHHHHhCCC---EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHH
Confidence 4445566778999999999999998 99999999999887642 234444443320
Q ss_pred --------CCCCHHHHHHHHHHhCCCceeecC---------ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC
Q 020776 229 --------ERDTVEQVREYVKEFHPKLIGLTG---------SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP 291 (321)
Q Consensus 229 --------~~Dt~e~l~~~~~~~~~~~~~l~~---------~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~ 291 (321)
..-+.+.+.+++++.|++...+.. ..+...+.++++||.++|+ ++|
T Consensus 88 ~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt---------------~~i-- 150 (175)
T 3gyk_A 88 HWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPS---------------FVV-- 150 (175)
T ss_dssp HHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSE---------------EEE--
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCE---------------EEE--
Confidence 012456777777777766432210 0234556778899998884 556
Q ss_pred CCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 292 KMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 292 dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+|+ .+.|..+.+.+.+.|.+++++
T Consensus 151 ~g~---~~~G~~~~~~l~~~i~~~l~~ 174 (175)
T 3gyk_A 151 EDA---LVPGFVEQSQLQDAVDRARKA 174 (175)
T ss_dssp TTE---EECSCCCHHHHHHHHHHHHHH
T ss_pred CCE---EeeCCCCHHHHHHHHHHHHhc
Confidence 454 344778888888888887754
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=99.91 Aligned_cols=110 Identities=12% Similarity=0.224 Sum_probs=74.3
Q ss_pred EEcCCCCeee--ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcC----CcEEEEEEeeCCCCCCHHHHHHH
Q 020776 166 LINHDGKNVT--EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSG----IDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 166 l~d~~G~~vs--Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g----~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
+...++..+. +..-.+|++||+||++||++ |+.+.|.+.++++++.++.+ .++.++.|++|.+
T Consensus 25 V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~p-Ck~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~---------- 93 (470)
T 3qcp_A 25 VVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGA-CRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE---------- 93 (470)
T ss_dssp EEECSCSCGGGTCTTGGGSCEEEEEECTTCHH-HHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC----------
T ss_pred cEECCHHHHHHHHHhCCCCeEEEEEECCCCHH-HHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC----------
Confidence 4444555443 22224589999999999998 99999999999999974422 1477777776531
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCe-EEEEeC------------CCCChh
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKME-FVKFFG------------KNNDVN 306 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~-Iv~~~~------------~~~~~~ 306 (321)
.++++.|+|...|+ ++++++.|. ....|. ...+.+
T Consensus 94 ------------------~~la~~y~V~~~PT--------------lilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~ 141 (470)
T 3qcp_A 94 ------------------VDLCRKYDINFVPR--------------LFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVD 141 (470)
T ss_dssp ------------------HHHHHHTTCCSSCE--------------EEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHH
T ss_pred ------------------HHHHHHcCCCccCe--------------EEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHH
Confidence 35688899998887 777766553 222222 235666
Q ss_pred HHHHHHHHHHHH
Q 020776 307 SLADGIIKEIKQ 318 (321)
Q Consensus 307 ~l~~~l~~~L~~ 318 (321)
++...+++++.+
T Consensus 142 eLe~~~e~Link 153 (470)
T 3qcp_A 142 ELESEVRRLVNK 153 (470)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 777777766643
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=81.16 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+|++|||++ |....|.++++.++ + ++.++.|.+|.. .+--..+
T Consensus 24 ~~~vvi~khatwCgp-c~~~~~~~e~~~~~--~----~v~~~~vdVde~------------------------r~~Sn~I 72 (112)
T 3iv4_A 24 NKYVFVLKHSETCPI-SANAYDQFNKFLYE--R----DMDGYYLIVQQE------------------------RDLSDYI 72 (112)
T ss_dssp CSEEEEEEECTTCHH-HHHHHHHHHHHHHH--H----TCCEEEEEGGGG------------------------HHHHHHH
T ss_pred CCCEEEEEECCcCHh-HHHHHHHHHHHhcc--C----CceEEEEEeecC------------------------chhhHHH
Confidence 799999999999997 99999999999873 2 355666776632 2223567
Q ss_pred HHHcCceE-eecCCCCCCcccccceEEEEEcCCCeEEEE-eCCCCChhHHHHH
Q 020776 261 ARAYRVYY-MKTAEEDSDYLVDHSIVMYLMSPKMEFVKF-FGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~-~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~-~~~~~~~~~l~~~ 311 (321)
+..|||.. +|+ +++=++|++++. .-+.++.+.+.+.
T Consensus 73 A~~~~V~h~sPq---------------~il~k~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 73 AKKTNVKHESPQ---------------AFYFVNGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp HHHHTCCCCSSE---------------EEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred HHHhCCccCCCe---------------EEEEECCEEEEEeeccccCHHHHHHh
Confidence 89999984 674 555599999998 4456777655543
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.5e-09 Score=103.05 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=76.4
Q ss_pred EcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 167 INHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 167 ~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
...+|+.+...-. .+|+|||+||++||++ |+.+.|.+.++.+++++. .++.++.|+.|.+
T Consensus 355 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~-C~~~~p~~~~l~~~~~~~--~~v~~~~id~~~~---------------- 415 (481)
T 3f8u_A 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGH-CKNLEPKYKELGEKLSKD--PNIVIAKMDATAN---------------- 415 (481)
T ss_dssp EEECTTTHHHHHTCTTCEEEEEEECTTBHH-HHHHHHHHHHHHHHTTTC--SSEEEEEEETTSS----------------
T ss_pred EEecccCHHHHhhcCCCcEEEEEecCcChh-HHHhhHHHHHHHHHhccC--CCEEEEEEECCch----------------
Confidence 3445555543223 4899999999999998 999999999999999764 2577776665431
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~~l~~~L 316 (321)
.+.+.|+|...|+ +++++++|++ +..+.|..+.+.+.+.|.+.+
T Consensus 416 -------------~~~~~~~v~~~Pt--------------~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 416 -------------DVPSPYEVRGFPT--------------IYFSPANKKLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp -------------CCCTTCCCCSSSE--------------EEEECTTCTTSCEECCSCCSHHHHHHHHHHHC
T ss_pred -------------hhHhhCCCcccCE--------------EEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhc
Confidence 1234677877776 8888888874 566778888888888777654
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-09 Score=85.89 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+.+.+||+||+.||++ |...-+.+...++..... ..+.++-|.+|.+.. ..
T Consensus 17 ~~~~~LV~F~A~wC~~-Ck~~~~~i~~~~~~~a~~--~~~~l~~vdv~~~~~--------------------------~~ 67 (116)
T 3dml_A 17 KAELRLLMFEQPGCLY-CARWDAEIAPQYPLTDEG--RAAPVQRLQMRDPLP--------------------------PG 67 (116)
T ss_dssp --CEEEEEEECTTCHH-HHHHHHHTTTTGGGSHHH--HHSCEEEEETTSCCC--------------------------TT
T ss_pred cCCCEEEEEECCCCHH-HHHHHHHHHhhHHHhhhc--ccceEEEEECCCCCc--------------------------hh
Confidence 4578999999999998 998876555443322111 124445566653210 11
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
++..|+|.++|+ +++++ +|+.+.+..|..+.+.+...|.+++.+.
T Consensus 68 la~~~~V~g~PT--------------~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~~~ 112 (116)
T 3dml_A 68 LELARPVTFTPT--------------FVLMA-GDVESGRLEGYPGEDFFWPMLARLIGQA 112 (116)
T ss_dssp CBCSSCCCSSSE--------------EEEEE-TTEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCE--------------EEEEE-CCEEEeeecCCCCHHHHHHHHHHHHhhc
Confidence 245677877776 78888 9999999999999999999999888764
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.3e-08 Score=98.02 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=72.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |+...|.+.++.++++++ +.++.|++|. ...
T Consensus 20 ~~~~~lv~F~a~wC~~-C~~~~p~~~~~a~~~~~~----v~~~~vd~~~----------------------------~~~ 66 (481)
T 3f8u_A 20 SAGLMLVEFFAPWCGH-AKRLAPEYEAAATRLKGI----VPLAKVDCTA----------------------------NTN 66 (481)
T ss_dssp SSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----CCEEEEETTT----------------------------CHH
T ss_pred CCCeEEEEEECCCCHH-HHHhHHHHHHHHHHhcCc----eEEEEEECCC----------------------------CHH
Confidence 3489999999999998 999999999999999753 5566666542 145
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|+|...|+ +++-++|+++..+.|..+.+.+.+.+.+.+
T Consensus 67 l~~~~~v~~~Pt---------------l~~~~~g~~~~~~~G~~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 67 TCNKYGVSGYPT---------------LKIFRDGEEAGAYDGPRTADGIVSHLKKQA 108 (481)
T ss_dssp HHHHTTCCEESE---------------EEEEETTEEEEECCSCSSHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCE---------------EEEEeCCceeeeecCccCHHHHHHHHHhhc
Confidence 688999999995 444489988888889999998888887765
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=98.74 E-value=8.8e-09 Score=91.47 Aligned_cols=75 Identities=9% Similarity=-0.000 Sum_probs=57.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+|++|||+||++||++ |....|.|.++..+|. ++.++.|++| ...
T Consensus 119 ~~k~vvV~F~a~wC~~-C~~l~p~l~~la~~~~-----~v~f~~vd~~-----------------------------~~~ 163 (217)
T 2trc_P 119 KVTTIVVNIYEDGVRG-CDALNSSLECLAAEYP-----MVKFCKIRAS-----------------------------NTG 163 (217)
T ss_dssp TTCEEEEEEECTTSTT-HHHHHHHHHHHHTTCT-----TSEEEEEEHH-----------------------------HHT
T ss_pred CCcEEEEEEECCCCcc-HHHHHHHHHHHHHHCC-----CeEEEEEECC-----------------------------cHH
Confidence 4699999999999998 9999999999988874 4666666532 112
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
++..|+|...|+ ++++ ++|+++..+.|..+
T Consensus 164 l~~~~~i~~~PT--------------l~~~-~~G~~v~~~~G~~~ 193 (217)
T 2trc_P 164 AGDRFSSDVLPT--------------LLVY-KGGELISNFISVAE 193 (217)
T ss_dssp CSTTSCGGGCSE--------------EEEE-ETTEEEEEETTGGG
T ss_pred HHHHCCCCCCCE--------------EEEE-ECCEEEEEEeCCcc
Confidence 356688888885 5555 59999988766544
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-08 Score=86.95 Aligned_cols=120 Identities=8% Similarity=0.038 Sum_probs=74.8
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee--CC-CCC-------------CHHHHH
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV--DP-ERD-------------TVEQVR 237 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~--Dp-~~D-------------t~e~l~ 237 (321)
+.+...++|++|+.||++|||+ |..+.+.|.++.+ + ++.++.+.+ .. ..+ ....+.
T Consensus 79 ~~~g~~~~k~~vv~F~d~~Cp~-C~~~~~~l~~l~~----~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~ 150 (216)
T 1eej_A 79 IVYKAPQEKHVITVFTDITCGY-CHKLHEQMADYNA----L---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFD 150 (216)
T ss_dssp EEECCTTCCEEEEEEECTTCHH-HHHHHTTHHHHHH----T---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHH
T ss_pred eeecCCCCCEEEEEEECCCCHH-HHHHHHHHHHHHh----C---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHH
Confidence 3444557899999999999998 9999999988753 2 244444443 21 111 112233
Q ss_pred HHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 238 EYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 238 ~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++....++++.......+...+++++|||..+|+ + ++ .+|.. +.|..+.+++.+.|.++++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt--------------~-v~-~dG~~---~~G~~~~~~l~~~l~~~~~ 211 (216)
T 1eej_A 151 DVMAGKSVAPASCDVDIADHYALGVQLGVSGTPA--------------V-VL-SNGTL---VPGYQPPKEMKEFLDEHQK 211 (216)
T ss_dssp HHHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSE--------------E-EC-TTSCE---EESCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCChhHHHHHHHHHHHHHHHcCCCccCE--------------E-EE-cCCeE---ecCCCCHHHHHHHHHHhhh
Confidence 3333333322112223567778899999999986 4 44 35643 3467788888888887766
Q ss_pred HHh
Q 020776 318 QYK 320 (321)
Q Consensus 318 ~~k 320 (321)
..+
T Consensus 212 ~~~ 214 (216)
T 1eej_A 212 MTS 214 (216)
T ss_dssp HHH
T ss_pred hcc
Confidence 543
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-08 Score=84.38 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=80.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC-------------------------------
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP------------------------------- 228 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp------------------------------- 228 (321)
.++++|+.||..|||+ |....+.|.++.+++.+ ++.+..+.+.-
T Consensus 24 ~~~~~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~----~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~ 98 (192)
T 3h93_A 24 PGKIEVVELFWYGCPH-CYAFEPTIVPWSEKLPA----DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAI 98 (192)
T ss_dssp TTSEEEEEEECTTCHH-HHHHHHHHHHHHHTCCT----TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCChh-HHHhhHHHHHHHHhCCC----CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6899999999999998 99999999998887754 46665555421
Q ss_pred -----CCCCHHHHHHHHHHhCCCceeec---C------ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCe
Q 020776 229 -----ERDTVEQVREYVKEFHPKLIGLT---G------SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKME 294 (321)
Q Consensus 229 -----~~Dt~e~l~~~~~~~~~~~~~l~---~------~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~ 294 (321)
.-.+.+.+.+++++.|++..-+. . ..+.....++.+||.++| +|+| +|+
T Consensus 99 ~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtP---------------t~~v--ng~ 161 (192)
T 3h93_A 99 HKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVP---------------TMVV--NGK 161 (192)
T ss_dssp HTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSS---------------EEEE--TTT
T ss_pred HHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCC---------------eEEE--CCE
Confidence 11356667777777766532110 0 012334556778888887 4566 576
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 295 FVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 295 Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+....+..+.+.+.+.|..++++.+
T Consensus 162 ~~~~~~G~~~~e~l~~~i~~l~~k~~ 187 (192)
T 3h93_A 162 YRFDIGSAGGPEETLKLADYLIEKER 187 (192)
T ss_dssp EEEEHHHHTSHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCHHHHHHHHHHHHHHHH
Confidence 65554456678888888888887653
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-08 Score=99.12 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=72.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||.||++||++ |+...|.+.++.+++++. ++.++.|++|.+ ..
T Consensus 30 ~~~~~lv~F~a~wC~~-C~~~~p~~~~~a~~~~~~---~v~~~~vd~~~~----------------------------~~ 77 (504)
T 2b5e_A 30 SHDLVLAEFFAPWCGH-CKNMAPEYVKAAETLVEK---NITLAQIDCTEN----------------------------QD 77 (504)
T ss_dssp TCSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT---TCEEEEEETTTC----------------------------HH
T ss_pred cCCeEEEEEECCCCHH-HHHhHHHHHHHHHHhccC---CeEEEEEECCCC----------------------------HH
Confidence 4799999999999998 999999999999999754 577777776521 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE--EEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF--VKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I--v~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|+|...|+ ++++ ++|++ +..|.|..+.+.+.+.+.+.+
T Consensus 78 l~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~~~G~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 78 LCMEHNIPGFPS--------------LKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQS 121 (504)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred HHHhcCCCcCCE--------------EEEE-eCCccccceeecCCCCHHHHHHHHHHhc
Confidence 788899998886 5666 46775 667778889888888887665
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-08 Score=102.37 Aligned_cols=91 Identities=9% Similarity=0.036 Sum_probs=71.5
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.++.|++++|+||++||++ |..++|.|.++++++++ ++.++.|++|..
T Consensus 451 ~~~~~~~vlv~F~a~wC~~-c~~~~p~~~~~a~~~~~----~v~~~~vd~~~~--------------------------- 498 (780)
T 3apo_A 451 PASDKEPWLVDFFAPWSPP-SRALLPELRKASTLLYG----QLKVGTLDCTIH--------------------------- 498 (780)
T ss_dssp CTTCCSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TCEEEEEETTTC---------------------------
T ss_pred HHcCCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhcC----CeEEEEEeCCCC---------------------------
Confidence 3447899999999999998 99999999999999974 377777776521
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..+++.|||...|+ ++++ ++|++ ..+.|..+.+.+.+.+.+.+
T Consensus 499 -~~~~~~~~v~~~Pt--------------~~~~-~~g~~-~~~~g~~~~~~l~~fi~~~~ 541 (780)
T 3apo_A 499 -EGLCNMYNIQAYPT--------------TVVF-NQSSI-HEYEGHHSAEQILEFIEDLR 541 (780)
T ss_dssp -HHHHHHTTCCSSSE--------------EEEE-ETTEE-EEECSCSCHHHHHHHHHHHH
T ss_pred -HHHHHHcCCCcCCe--------------EEEE-cCCce-eeecCcccHHHHHHHHHhhc
Confidence 23677899988886 7777 46877 56778888888887777665
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.6e-08 Score=82.32 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=77.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC-----------------------------
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER----------------------------- 230 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~----------------------------- 230 (321)
.++++|+.||..|||+ |....+.|.++.+++.+ ++.++.+.++-..
T Consensus 24 ~~~~~vv~f~d~~Cp~-C~~~~~~l~~l~~~~~~----~v~~~~~~~~~~~~s~~aa~a~~aa~~~g~~~~~~~lf~~~~ 98 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPH-CAAIEPMVEDWAKTAPQ----DVVLKQVPIAFNAGMKPLQQLYYTLQALERPDLHPKVFTAIH 98 (195)
T ss_dssp TTCEEEEEEECTTCHH-HHHHHHHHHHHHHTCCT----TEEEEEEECCSSGGGHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcc-HHHhhHHHHHHHHHCCC----CeEEEEEecccCcchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5899999999999998 99999999999888764 4666667765211
Q ss_pred ------CCHHHHHHHHHHhCCCceeec---C------ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 231 ------DTVEQVREYVKEFHPKLIGLT---G------SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 231 ------Dt~e~l~~~~~~~~~~~~~l~---~------~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
.+.+.+.+++++.|++...+. . ......+.++.+||.++| +|+| +|+.
T Consensus 99 ~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtP---------------t~vi--ng~~ 161 (195)
T 3hd5_A 99 TERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTP---------------AFAV--GGRY 161 (195)
T ss_dssp TSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSS---------------EEEE--TTTE
T ss_pred HhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCc---------------eEEE--CCEE
Confidence 245666667777665532110 0 012334556778888877 4666 4665
Q ss_pred EEEeCCCCCh-hHHHHHHHHHHHHH
Q 020776 296 VKFFGKNNDV-NSLADGIIKEIKQY 319 (321)
Q Consensus 296 v~~~~~~~~~-~~l~~~l~~~L~~~ 319 (321)
+.-.....+. +.+.+.|..++++.
T Consensus 162 ~~~g~~~~~~~e~~~~~i~~L~~~~ 186 (195)
T 3hd5_A 162 MTSPVLAGNDYAGALKVVDQLIVQS 186 (195)
T ss_dssp EECTTTTTGGGTTHHHHHHHHHHHH
T ss_pred EeCccccCChHHHHHHHHHHHHHHH
Confidence 4432233344 77777777777654
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5e-08 Score=91.98 Aligned_cols=87 Identities=10% Similarity=0.100 Sum_probs=66.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHH-------HHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQK-------LAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTG 252 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~-------L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~ 252 (321)
.++++||+||++||+ |..+.|. +.++.+.+++. ++.++.|++|.+
T Consensus 27 ~~~~~lV~F~a~wC~--c~~~~p~~~~~~~~~~~~a~~~~~~---~v~~~~Vd~~~~----------------------- 78 (350)
T 1sji_A 27 KYDVLCLYYHESVSS--DKVAQKQFQLKEIVLELVAQVLEHK---DIGFVMVDAKKE----------------------- 78 (350)
T ss_dssp TCSEEEEEEECCSCS--SSTTSHHHHHHHHHHHHHHHHGGGS---SEEEEEEETTTT-----------------------
T ss_pred hCCeEEEEEECCCCc--chhhCchhhhhhHHHHHHHHHHhhc---CcEEEEEeCCCC-----------------------
Confidence 478999999999998 9888888 78888888654 587777776531
Q ss_pred ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 253 SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 253 ~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..++++|+|...|+ ++++ ++|++ ..|.|..+.+.+.+.+.+.
T Consensus 79 -----~~l~~~~~v~~~Pt--------------~~~~-~~g~~-~~~~G~~~~~~l~~~i~~~ 120 (350)
T 1sji_A 79 -----AKLAKKLGFDEEGS--------------LYVL-KGDRT-IEFDGEFAADVLVEFLLDL 120 (350)
T ss_dssp -----HHHHHHHTCCSTTE--------------EEEE-ETTEE-EEECSCCCHHHHHHHHHTT
T ss_pred -----HHHHHhcCCCccce--------------EEEE-ECCcE-EEecCCCCHHHHHHHHHHh
Confidence 34688899998886 6666 78884 4667888888877776654
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-08 Score=105.44 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=72.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |+.+.|.+.++++++++ ++.++.|++|.. ..
T Consensus 674 ~~~~v~v~F~a~wC~~-C~~~~p~~~~la~~~~~----~~~~~~vd~~~~----------------------------~~ 720 (780)
T 3apo_A 674 GKTHWVVDFYAPWSGP-SQNFAPEFELLARMIKG----KVRAGKVDCQAY----------------------------PQ 720 (780)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTT----TCEEEEEETTTC----------------------------HH
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CceEEEEECCCC----------------------------HH
Confidence 4789999999999998 99999999999999964 377777776521 24
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC----CCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK----NNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~----~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ ++++ ++|+++.++.| ..+.+++.+.|.+++++.
T Consensus 721 ~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 721 TCQKAGIKAYPS--------------VKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp HHHHTTCCSSSE--------------EEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred HHHhcCCCcCCE--------------EEEE-cCCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 678899988886 6666 78887655434 578889999998887654
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=81.04 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=78.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC--CC----------------------------
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD--PE---------------------------- 229 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D--p~---------------------------- 229 (321)
.++++|++||..|||+ |....+.|.++.+++.. ++.+..+.++ +.
T Consensus 21 ~~~~~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~----~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~ 95 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVH-CHHFDPLLLKLGKALPS----DAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAV 95 (195)
T ss_dssp SSSEEEEEEECTTSCC-TTSSCHHHHHHHHHSCT----TEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCChh-HHHHhHHHHHHHHHCCC----ceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5899999999999998 99999999999888753 4666655542 10
Q ss_pred ------CCCHHHHHHHHHHh-CCCceeec---C------ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC
Q 020776 230 ------RDTVEQVREYVKEF-HPKLIGLT---G------SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM 293 (321)
Q Consensus 230 ------~Dt~e~l~~~~~~~-~~~~~~l~---~------~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG 293 (321)
..+.+.+.+++++. |++...+. . ..+.....++.+||.++| +|+|| |
T Consensus 96 ~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtP---------------t~vin--g 158 (195)
T 2znm_A 96 YEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTP---------------TVIVG--G 158 (195)
T ss_dssp HHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSS---------------EEEET--T
T ss_pred HHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCC---------------eEEEC--C
Confidence 12456777777777 76653211 0 123345667788888888 46775 5
Q ss_pred eEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 294 EFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 294 ~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+.+ ..+..+.+++.+.|.+++++.
T Consensus 159 ~~~--~~g~~~~~~l~~~i~~~l~~~ 182 (195)
T 2znm_A 159 KYR--VIFNNGFDGGVHTIKELVAKV 182 (195)
T ss_dssp TEE--ECCCSHHHHHHHHHHHHHHHH
T ss_pred EEE--EcCCCCHHHHHHHHHHHHHHH
Confidence 532 235567788888888887654
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-08 Score=93.15 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=70.3
Q ss_pred cCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 168 NHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 168 d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
..+++.+...-+ .+|++||+||++||++ |+...|.+.++.++++++ .++.++.|..+.+
T Consensus 253 ~l~~~~f~~~~~~~~k~~lv~f~a~wC~~-C~~~~p~~~~la~~~~~~--~~v~~~~vd~~~~----------------- 312 (361)
T 3uem_A 253 VLVGKNFEDVAFDEKKNVFVEFYAPWCGH-CKQLAPIWDKLGETYKDH--ENIVIAKMDSTAN----------------- 312 (361)
T ss_dssp EECTTTHHHHHTCTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTC--SSEEEEEEETTTC-----------------
T ss_pred EeecCchhhhcccCCCcEEEEEecCcCHh-HHHHHHHHHHHHHHhccC--CcEEEEEEECCcc-----------------
Confidence 344555443222 5899999999999998 999999999999999764 2576666654421
Q ss_pred ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHH
Q 020776 247 LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 247 ~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~ 313 (321)
+ .+.|+|...|+ +++++++ |+....|.|..+.+.+.+.|.
T Consensus 313 --------~-----~~~~~v~~~Pt--------------~~~~~~~~~~~~~~~~G~~~~~~l~~~l~ 353 (361)
T 3uem_A 313 --------E-----VEAVKVHSFPT--------------LKFFPASADRTVIDYNGERTLDGFKKFLE 353 (361)
T ss_dssp --------B-----CSSCCCCSSSE--------------EEEECSSSSCCCEECCSCSSHHHHHHHHT
T ss_pred --------c-----hhhcCCcccCe--------------EEEEECCCCcceeEecCCCCHHHHHHHHH
Confidence 0 24577777776 8888655 667777878888776666554
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-08 Score=98.12 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=72.6
Q ss_pred EEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 166 LINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 166 l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
+...+|+.+...-. .+|++||+||++||++ |+.+.|.+.++.++++.. ..++.++.|+.+.+
T Consensus 360 v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~~~-~~~v~~~~vd~~~~--------------- 422 (504)
T 2b5e_A 360 VFQLVGKNHDEIVNDPKKDVLVLYYAPWCGH-CKRLAPTYQELADTYANA-TSDVLIAKLDHTEN--------------- 422 (504)
T ss_dssp EEEECTTTHHHHHHCTTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHHHH-CSSCEEEEEEGGGC---------------
T ss_pred ceecccccHHHhhccCCCCEEEEEECCCChh-HHHHhHHHHHHHHHhhcc-CCcEEEEEecCCcc---------------
Confidence 44555665543322 4899999999999998 999999999999999733 23566665554311
Q ss_pred CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE--EEEeCCCCChhHHHHHHHHHH
Q 020776 245 PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF--VKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 245 ~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I--v~~~~~~~~~~~l~~~l~~~L 316 (321)
+ ... |+|...|+ ++++ ++|+. +..+.|..+.+.+.+.|.+.+
T Consensus 423 ----------~----~~~-~~v~~~Pt--------------~~~~-~~G~~~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 423 ----------D----VRG-VVIEGYPT--------------IVLY-PGGKKSESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp ----------C----CSS-CCCSSSSE--------------EEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred ----------c----ccc-CCceecCe--------------EEEE-eCCceecceEecCCCCHHHHHHHHHhcC
Confidence 0 112 67777775 6666 78876 566778888888888777654
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-07 Score=78.25 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=49.4
Q ss_pred CCCeEEEEEec-------CCCCCCcHHHHHHHHHHHHHHhhh-cCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 180 LGKWTVIYFGF-------THCPDICPDELQKLAAAVDKIKEN-SGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 180 kGK~vLL~Fwa-------twCp~vC~~elp~L~~l~~~~~~~-~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
++.+|||.||| .||++ |+...|.++++.++|..+ .+.++.+.-|++|.
T Consensus 36 ~~~~vvV~F~A~~~~~~~~wCgp-Ck~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~----------------------- 91 (178)
T 3ga4_A 36 PGYFNILYITMRGTNSNGMSCQL-CHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNE----------------------- 91 (178)
T ss_dssp TTCEEEEEEECCSBCTTSCBCHH-HHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT-----------------------
T ss_pred CCCcEEEEEeCCCCCCCCCCChh-HHHHHHHHHHHHHHhhhccCCCCEEEEEEECcc-----------------------
Confidence 46789999999 49998 999999999999999732 11257777666653
Q ss_pred CChHHHHHHHHHcCceEeec
Q 020776 252 GSPDEIRNIARAYRVYYMKT 271 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~~~p~ 271 (321)
..+++++|||..+|+
T Consensus 92 -----~~~la~~~~I~siPt 106 (178)
T 3ga4_A 92 -----VPQLVKDLKLQNVPH 106 (178)
T ss_dssp -----CHHHHHHTTCCSSCE
T ss_pred -----CHHHHHHcCCCCCCE
Confidence 256788999999996
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=75.25 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=76.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee--CC-----------------------------
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV--DP----------------------------- 228 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~--Dp----------------------------- 228 (321)
.++++|+.||..|||+ |....+.|.++.+++.+ +|.+..+.+ ++
T Consensus 24 ~a~v~i~~f~d~~Cp~-C~~~~~~l~~l~~~~~~----~v~~~~~p~~~~~~s~~a~~a~~~a~~~~~~~~~~~~lf~~~ 98 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPH-CAHFDSKLQAWGARQAK----DVRFTLVPAVFGGVWDPFARAYLAADVLGVAKRSHTAMFEAI 98 (193)
T ss_dssp TTCEEEEEEECTTCHH-HHHHHHHHHHHHHTSCT----TEEEEEEECCCSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCChh-HhhhhHHHHHHHHhcCC----ceEEEEeCcccCCCcHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 6889999999999998 99999999998887753 466555554 21
Q ss_pred --------CCCCHHHHHHHHHHhCCCceeec---C------ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC
Q 020776 229 --------ERDTVEQVREYVKEFHPKLIGLT---G------SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP 291 (321)
Q Consensus 229 --------~~Dt~e~l~~~~~~~~~~~~~l~---~------~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~ 291 (321)
...+.+.+.+++++.|++..-+. . ..+.....++.+||.++| +|+||
T Consensus 99 ~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtP---------------t~vin- 162 (193)
T 2rem_A 99 HEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTP---------------TIVVN- 162 (193)
T ss_dssp HTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSSS---------------EEEET-
T ss_pred HHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCCC---------------eEEEC-
Confidence 11245667777777766543110 0 022234556778888877 46775
Q ss_pred CCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 292 KMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 292 dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
|+.+ ..+. +.+++.+.|.+++++.
T Consensus 163 -g~~~--~~g~-~~~~l~~~i~~~~~~~ 186 (193)
T 2rem_A 163 -GRYM--VTGH-DFEDTLRITDYLVSRE 186 (193)
T ss_dssp -TTEE--ECCS-SHHHHHHHHHHHHHHH
T ss_pred -CEEE--ecCC-CHHHHHHHHHHHHHHH
Confidence 5433 1344 8888888888887654
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=83.49 Aligned_cols=89 Identities=8% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHH------HHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDEL------QKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~el------p~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
.++++||.||++||++ |...- |.+.++.+.++.. ++.++.|++|.+
T Consensus 29 ~~~~vlV~FyApWC~~-~~~~~~l~~~~p~~e~~a~~~~~~---~v~~~~Vd~~~~------------------------ 80 (367)
T 3us3_A 29 KYEVLALLYHEPPEDD-KASQRQFEMEELILELAAQVLEDK---GVGFGLVDSEKD------------------------ 80 (367)
T ss_dssp HCSEEEEEEECCCCSS-HHHHHHHHHHHHHHHHHHHHHTTT---TEEEEEEETTTT------------------------
T ss_pred hCCeEEEEEECCCchh-HHHhhhhccccHHHHHHHHHhhcC---CceEEEEeCccc------------------------
Confidence 4689999999999998 84432 5777888877643 577777776531
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..++++|+|...|+ ++++ ++|+.+ .|.|..+.+.+.+.|.+.+
T Consensus 81 ----~~l~~~~~V~~~PT--------------l~~f-~~G~~~-~y~G~~~~~~i~~~i~~~~ 123 (367)
T 3us3_A 81 ----AAVAKKLGLTEEDS--------------IYVF-KEDEVI-EYDGEFSADTLVEFLLDVL 123 (367)
T ss_dssp ----HHHHHHHTCCSTTE--------------EEEE-ETTEEE-ECCSCCSHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCCcCce--------------EEEE-ECCcEE-EeCCCCCHHHHHHHHHHhc
Confidence 35788999999886 5555 478875 6778889888888887765
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-07 Score=74.92 Aligned_cols=89 Identities=12% Similarity=0.002 Sum_probs=65.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|+++||++ |.+ |....|.|.++.++|+.+ +.++.|++|.. ..
T Consensus 22 ~~~pv~v~f~a~-~~~-c~~~~p~l~~~A~~~~gk----~~f~~vd~d~~----------------------------~~ 67 (133)
T 2djk_A 22 AGIPLAYIFAET-AEE-RKELSDKLKPIAEAQRGV----INFGTIDAKAF----------------------------GA 67 (133)
T ss_dssp TTSCEEEEECSC-SSS-HHHHHHHHHHHHHSSTTT----SEEEEECTTTT----------------------------GG
T ss_pred CCCCEEEEEecC-hhh-HHHHHHHHHHHHHHhCCe----EEEEEEchHHh----------------------------HH
Confidence 367899999999 777 999999999999988754 66666665421 22
Q ss_pred HHHHcCceE--eecCCCCCCcccccceEEEEEcC-CCeEEEEeC--CCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYY--MKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFG--KNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~--~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~--~~~~~~~l~~~l~~~L~ 317 (321)
++..||+.. +|+ +++++. +|+. +... +..+.+.+.+.|.+.++
T Consensus 68 ~a~~~gi~~~~iPt--------------l~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~ 115 (133)
T 2djk_A 68 HAGNLNLKTDKFPA--------------FAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp GTTTTTCCSSSSSE--------------EEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccCCE--------------EEEEecCcCcc-cCCCCccccCHHHHHHHHHHHHc
Confidence 467788877 665 666653 5776 4554 77888888888887764
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-07 Score=74.45 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l 207 (321)
+++++++ ||++||++ |....+.|+++
T Consensus 18 ~~~~vv~-f~a~~C~~-C~~~~~~l~~~ 43 (116)
T 2e7p_A 18 SSAPVVV-FSKTYCGY-CNRVKQLLTQV 43 (116)
T ss_dssp TSSSEEE-EECTTCHH-HHHHHHHHHHH
T ss_pred cCCCEEE-EECCCChh-HHHHHHHHHHc
Confidence 4566666 99999998 99999988877
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=77.09 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=61.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC-CCCH-------------HHHHHHHHHhCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE-RDTV-------------EQVREYVKEFHP 245 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~-~Dt~-------------e~l~~~~~~~~~ 245 (321)
.+|++|+.||..|||+ |....+.|.++.+ . +..+.++.+.+... .+.. ..+.++....++
T Consensus 85 ~~k~~vv~F~d~~Cp~-C~~~~~~l~~~~~----~-~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHY-CHLLHQQLKEYND----L-GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHH-HHHHHTTHHHHHH----T-TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHh-HHHHHHHHHHHHh----C-CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 5789999999999998 9999999888533 2 33344343333211 1111 111121111111
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
+........+...++++.|||.++|+ +++ .||+ .+.|..+.+++.+.|.
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt---------------~vi-~nG~---~~~G~~~~~~l~~~l~ 207 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPS---------------IVT-STGE---LIGGYLKPADLLRALE 207 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCE---------------EEC-TTSC---CCCSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCE---------------EEE-eCCE---EecCCCCHHHHHHHHH
Confidence 11011112456677889999999985 445 5676 3446667666555443
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=74.83 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=63.2
Q ss_pred ccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 178 DFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 178 d~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
+.+++++|++||++ ||++ |....|.+.++.+. . .++.++.|++|. ..
T Consensus 19 ~~~~~v~lv~f~~~~~C~~-C~~~~~~~~~la~~-~----~~v~~~~vd~~~--------------------------~~ 66 (226)
T 1a8l_A 19 KMVNPVKLIVFVRKDHCQY-CDQLKQLVQELSEL-T----DKLSYEIVDFDT--------------------------PE 66 (226)
T ss_dssp GCCSCEEEEEEECSSSCTT-HHHHHHHHHHHHTT-C----TTEEEEEEETTS--------------------------HH
T ss_pred hcCCCeEEEEEecCCCCch-hHHHHHHHHHHHhh-C----CceEEEEEeCCC--------------------------cc
Confidence 45667889999999 9998 99999999998643 2 257777776541 11
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE-EEeCCCCChhHHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV-KFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv-~~~~~~~~~~~l~~~l~~~L 316 (321)
..++++.|+|...|+ ++++ ++|... ..+.+..+.+++.+.+...+
T Consensus 67 ~~~~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~~G~~~~~~l~~~l~~~l 112 (226)
T 1a8l_A 67 GKELAKRYRIDRAPA--------------TTIT-QDGKDFGVRYFGLPAGHEFAAFLEDIV 112 (226)
T ss_dssp HHHHHHHTTCCSSSE--------------EEEE-ETTBCCSEEEESCCCTTHHHHHHHHHH
T ss_pred cHHHHHHcCCCcCce--------------EEEE-cCCceeeEEEeccCcHHHHHHHHHHHH
Confidence 356788999998885 4444 566432 44546666666666665544
|
| >4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.5e-06 Score=70.71 Aligned_cols=136 Identities=13% Similarity=0.045 Sum_probs=95.4
Q ss_pred cCCCCCCCCCCCCCeEEE--cC-----C----C--Ceeecccc--CCCeEEEEEecCCCCCCcHH-HHHHHHHHHHHH-h
Q 020776 150 KQGPSVGKAAIGGPFKLI--NH-----D----G--KNVTEKDF--LGKWTVIYFGFTHCPDICPD-ELQKLAAAVDKI-K 212 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~--d~-----~----G--~~vsLsd~--kGK~vLL~FwatwCp~vC~~-elp~L~~l~~~~-~ 212 (321)
.-...+|++.|..|+++. .. + | +++++++. +||.|||++..---.|.|.. .+|...+.++++ +
T Consensus 23 ~~~~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k 102 (199)
T 4h86_A 23 SMSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVK 102 (199)
T ss_dssp CBCTTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHH
T ss_pred hhHHHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHH
Confidence 345679999996665543 21 1 2 34677664 79999998886555557986 599999888876 5
Q ss_pred hhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC----CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEE
Q 020776 213 ENSGIDIVPAFISVDPERDTVEQVREYVKEFHP----KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYL 288 (321)
Q Consensus 213 ~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~----~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~L 288 (321)
.+ |.+ .++.|++ +++-.+++|.+.++. .+..+ .|...+++++||+...... ......+..+|
T Consensus 103 ~k-Gvd-~I~ciSV----ND~FVm~AW~k~~~~~~~~~i~~l---aD~~~eftkalGl~~~~~~-----gg~RS~Rya~I 168 (199)
T 4h86_A 103 EK-EVD-QVIVVTV----DNPFANQAWAKSLGVKDTTHIKFA---SDPGCAFTKSIGFELAVGD-----GVYWSGRWAMV 168 (199)
T ss_dssp HS-CCC-EEEEEES----SCHHHHHHHHHHTTCCCCSSEEEE---ECGGGHHHHHTTCEEEEET-----TEEEECSEEEE
T ss_pred hc-CCc-EEEEEEc----CCHHHHHHHHHHhccccccccccc---CCcchHHHHhcCceeecCC-----CcceeeEEEEE
Confidence 55 554 3456776 357999999999875 35566 7888999999998664321 12234566889
Q ss_pred EcCCCeEEEEeC
Q 020776 289 MSPKMEFVKFFG 300 (321)
Q Consensus 289 ID~dG~Iv~~~~ 300 (321)
|| ||+|.+.+.
T Consensus 169 Vd-DGvV~~~~v 179 (199)
T 4h86_A 169 VE-NGIVTYAAK 179 (199)
T ss_dssp EE-TTEEEEEEE
T ss_pred EE-CCEEEEEEE
Confidence 98 999988753
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-06 Score=77.32 Aligned_cols=123 Identities=12% Similarity=0.083 Sum_probs=71.6
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC-CCCCHHHHH---------HHHHH
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP-ERDTVEQVR---------EYVKE 242 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp-~~Dt~e~l~---------~~~~~ 242 (321)
.+.+..-.+|++|+.||..|||+ |....+.|.++.++ | +|.++.+.+-- ..++...+. +|.+.
T Consensus 89 ~i~~G~~~ak~~v~~F~D~~Cp~-C~~~~~~l~~~~~~-----g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~ 161 (241)
T 1v58_A 89 WLLDGKKDAPVIVYVFADPFCPY-CKQFWQQARPWVDS-----G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQ 161 (241)
T ss_dssp CEEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHT-----T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHH
T ss_pred CceECCCCCCeEEEEEECCCChh-HHHHHHHHHHHHhC-----C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHH
Confidence 34445556899999999999998 99999999886653 1 35544444310 112222211 12222
Q ss_pred hCCCc-----eee-------cCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 243 FHPKL-----IGL-------TGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 243 ~~~~~-----~~l-------~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+...| ... ....+...++++.|||..+|+ +++.|.+|++ ....|..+.+++.+
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt--------------~vi~~~~G~~-~~~~G~~~~~~L~~ 226 (241)
T 1v58_A 162 YEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPA--------------IYYMSKENTL-QQAVGLPDQKTLNI 226 (241)
T ss_dssp HHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCE--------------EEEEETTTEE-EEEESSCCHHHHHH
T ss_pred HHHHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCE--------------EEEECCCCCE-EEecCCCCHHHHHH
Confidence 11111 000 001234566788899998886 7777888976 44557778877777
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
.|.+.+.
T Consensus 227 ~l~~~~~ 233 (241)
T 1v58_A 227 IMGNKLQ 233 (241)
T ss_dssp HTTC---
T ss_pred HHHHHHH
Confidence 6665543
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-06 Score=69.11 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=39.2
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
+.+.+..++++|+.|+..+||+ |....+.+.++.++|.+. + +|.++...+
T Consensus 20 ~~~G~~~a~v~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~~~-~-~v~~~~~~~ 69 (175)
T 1z6m_A 20 LHIGESNAPVKMIEFINVRCPY-CRKWFEESEELLAQSVKS-G-KVERIIKLF 69 (175)
T ss_dssp EEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHHT-T-SEEEEEEEC
T ss_pred cccCCCCCCeEEEEEECCCCcc-hHHHHHHHHHHHHHHhhC-C-cEEEEEEeC
Confidence 4556667899999999999998 999999999999988443 1 466555544
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7e-06 Score=70.91 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.++++|+.||..|||+ |....|.|.++.+++.+ ++.+.-+.++
T Consensus 23 ~~~v~vv~f~d~~Cp~-C~~~~~~l~~~~~~~~~----~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPH-CAHLEPVLSKHAKSFKD----DMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHH-HHHHHHHHHHHHTTCCT----TEEEEEEECC
T ss_pred CCCcEEEEEECCCChh-HHHHHHHHHHHHHHCCC----CeEEEEecCC
Confidence 4799999999999998 99999999998877754 4666666664
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-06 Score=64.93 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=50.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAY 264 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~y 264 (321)
|+.||++||++ |....+.|.++..++ +.-|++|.+ .+++.+|
T Consensus 3 vv~f~a~~C~~-C~~~~~~L~~~~~~~---------~~~vdid~~----------------------------~~l~~~~ 44 (87)
T 1ttz_A 3 LTLYQRDDCHL-CDQAVEALAQARAGA---------FFSVFIDDD----------------------------AALESAY 44 (87)
T ss_dssp EEEEECSSCHH-HHHHHHHHHHTTCCC---------EEEEECTTC----------------------------HHHHHHH
T ss_pred EEEEECCCCch-HHHHHHHHHHHHHhh---------eEEEECCCC----------------------------HHHHHHh
Confidence 68899999998 999888887763211 234565521 2356678
Q ss_pred CceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 265 RVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 265 gv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
|+. +|+ +++ .+|+.+. +..+.+++.+.|.+.+.
T Consensus 45 g~~-vPt---------------l~~-~~G~~v~---g~~~~~~L~~~l~~~~~ 77 (87)
T 1ttz_A 45 GLR-VPV---------------LRD-PMGRELD---WPFDAPRLRAWLDAAPH 77 (87)
T ss_dssp TTT-CSE---------------EEC-TTCCEEE---SCCCHHHHHHHHHTCC-
T ss_pred CCC-cCe---------------EEE-ECCEEEe---CCCCHHHHHHHHHHHHH
Confidence 887 774 454 7899875 66788777777765443
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-06 Score=72.57 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=64.7
Q ss_pred cCCCeEEEEE----ecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 179 FLGKWTVIYF----GFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 179 ~kGK~vLL~F----watwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
.++.++|+.| |+.||++ |...+|.+.++++++.+. ..+.++.|++|.
T Consensus 19 ~~~~v~v~~~~~~~~~~~C~~-c~~~~~~~~~~a~~~~~~--~~v~~~~vd~~~-------------------------- 69 (229)
T 2ywm_A 19 FKEPVSIKLFSQAIGCESCQT-AEELLKETVEVIGEAVGQ--DKIKLDIYSPFT-------------------------- 69 (229)
T ss_dssp CCSCEEEEEECCCTTCGGGGH-HHHHHHHHHHHHHHHHCT--TTEEEEEECTTT--------------------------
T ss_pred ccCCeEEEEEccCCCCcccHH-HHHHHHHHHHHHhccCCC--CceEEEEecCcc--------------------------
Confidence 3445555666 5888998 999999999998888532 257776665432
Q ss_pred HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 255 DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 255 d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..+++++|+|...|+ +++++ +|.....|.|..+.+++.+.+.+.+
T Consensus 70 --~~~l~~~~~v~~~Pt--------------l~~~~-~~~~~~~~~G~~~~~~l~~~~~~~~ 114 (229)
T 2ywm_A 70 --HKEETEKYGVDRVPT--------------IVIEG-DKDYGIRYIGLPAGLEFTTLINGIF 114 (229)
T ss_dssp --CHHHHHHTTCCBSSE--------------EEEES-SSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred --cHHHHHHcCCCcCcE--------------EEEEC-CCcccceecCCccHHHHHHHHHHHH
Confidence 256789999999886 55554 5666666667777777777766654
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-06 Score=64.23 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=52.7
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHH
Q 020776 183 WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIAR 262 (321)
Q Consensus 183 ~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~ 262 (321)
.+|+.||++||++ |....+.|.++.+++ + +.+.-|++|.+ .+++.
T Consensus 30 ~~vv~y~~~~C~~-C~~a~~~L~~l~~e~----~--i~~~~vDId~d----------------------------~~l~~ 74 (107)
T 2fgx_A 30 RKLVVYGREGCHL-CEEMIASLRVLQKKS----W--FELEVINIDGN----------------------------EHLTR 74 (107)
T ss_dssp CCEEEEECSSCHH-HHHHHHHHHHHHHHS----C--CCCEEEETTTC----------------------------HHHHH
T ss_pred cEEEEEeCCCChh-HHHHHHHHHHHHHhc----C--CeEEEEECCCC----------------------------HHHHH
Confidence 5689999999998 999999999988765 2 33344565521 22456
Q ss_pred HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 263 AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 263 ~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.|++. +| ++++-.+|+++. .+..+.+++.+.|
T Consensus 75 ~ygv~-VP---------------~l~~~~dG~~v~--~g~~~~~~L~~~L 106 (107)
T 2fgx_A 75 LYNDR-VP---------------VLFAVNEDKELC--HYFLDSDVIGAYL 106 (107)
T ss_dssp HSTTS-CS---------------EEEETTTTEEEE--CSSCCCHHHHHHH
T ss_pred HhCCC-Cc---------------eEEEEECCEEEE--ecCCCHHHHHHHh
Confidence 78876 77 455556898873 3557777665543
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=77.10 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=62.1
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
..++..++.||++||++ |+...|.|+++..++. ++.+..|++|. ..
T Consensus 115 ~~~~~~i~~f~a~~C~~-C~~~~~~l~~~a~~~~-----~v~~~~vd~~~----------------------------~~ 160 (521)
T 1hyu_A 115 IDGDFEFETYYSLSCHN-CPDVVQALNLMAVLNP-----RIKHTAIDGGT----------------------------FQ 160 (521)
T ss_dssp CCSCEEEEEEECTTCSS-HHHHHHHHHHHHHHCT-----TEEEEEEETTT----------------------------CH
T ss_pred cCCCcceEEEECCCCcC-cHHHHHHHHHHHhHcC-----ceEEEEEechh----------------------------hH
Confidence 44678899999999998 9999999999987763 47666666542 14
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++.+|++..+|+ + ++ +|+.+.. +..+.+++.+.+.+
T Consensus 161 ~~~~~~~i~svPt--------------~-~i--~g~~~~~--G~~~~~~l~~~l~~ 197 (521)
T 1hyu_A 161 NEITERNVMGVPA--------------V-FV--NGKEFGQ--GRMTLTEIVAKVDT 197 (521)
T ss_dssp HHHHHTTCCSSSE--------------E-EE--TTEEEEE--SCCCHHHHHHHHCC
T ss_pred HHHHHhCCCccCE--------------E-EE--CCEEEec--CCCCHHHHHHHHhh
Confidence 5688899999885 4 44 8888765 66777777666543
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=97.95 E-value=5e-06 Score=61.14 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~ 211 (321)
++.||++|||+ |....+.|+++.+++
T Consensus 4 ~~~f~~~~C~~-C~~~~~~l~~~~~~~ 29 (80)
T 2k8s_A 4 KAIFYHAGCPV-CVSAEQAVANAIDPS 29 (80)
T ss_dssp EEEEEECSCHH-HHHHHHHHHHHSCTT
T ss_pred eEEEeCCCCCc-hHHHHHHHHHHHHhc
Confidence 67789999998 999999998876544
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=66.26 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=64.8
Q ss_pred CCCeEEEEEe--cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFG--FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~Fw--atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.+++|||.|| ++||+ ..|.+.++.+++... ..++.+.-|++|...+ ...
T Consensus 32 ~~~~vlV~Fy~~ApWCg-----l~P~~e~lA~~~~~~-~~~v~~akVD~d~~g~-----------------------~~n 82 (248)
T 2c0g_A 32 RFPYSVVKFDIASPYGE-----KHEAFTAFSKSAHKA-TKDLLIATVGVKDYGE-----------------------LEN 82 (248)
T ss_dssp TSSEEEEEEEESSCCSH-----HHHHHHHHHHHHHHH-CSSEEEEEEEECSSTT-----------------------CTT
T ss_pred cCCCEEEEEECCCCCCc-----cHHHHHHHHHHHhcc-CCCeEEEEEECCcccc-----------------------ccc
Confidence 4689999999 99997 789999999998751 1258888888763100 012
Q ss_pred HHHHHHcCce--EeecCCCCCCcccccceEEEEEcCCCeE--EEEe--CCCCChhHHHHHHHHH
Q 020776 258 RNIARAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKMEF--VKFF--GKNNDVNSLADGIIKE 315 (321)
Q Consensus 258 ~~~a~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~I--v~~~--~~~~~~~~l~~~l~~~ 315 (321)
..+++.|+|. ..|+ ++++ + |.+ ...| .+..+.+.+.+.|.+.
T Consensus 83 ~~la~~~~V~~~~~PT--------------l~~F-~-G~~~~~~~y~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 83 KALGDRYKVDDKNFPS--------------IFLF-K-GNADEYVQLPSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp HHHHHHTTCCTTSCCE--------------EEEE-S-SSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCCCCe--------------EEEE-e-CCcCcceeecccCCCCHHHHHHHHHHh
Confidence 4578889999 8886 5555 4 773 4445 6788888888777665
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.2e-05 Score=57.78 Aligned_cols=37 Identities=16% Similarity=0.410 Sum_probs=28.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
++.||++|||+ |....+.|+++..++. ++.+..+++|
T Consensus 3 v~~f~~~~C~~-C~~~~~~l~~l~~~~~-----~i~~~~vdi~ 39 (85)
T 1ego_A 3 TVIFGRSGCPY-CVRAKDLAEKLSNERD-----DFQYQYVDIR 39 (85)
T ss_dssp EEEECCTTSTH-HHHHHHHHHHHHHHHS-----SCEEEEECHH
T ss_pred EEEEeCCCCCC-HHHHHHHHHHHHhcCC-----CceEEEEecc
Confidence 67899999998 9999999999887653 3455555543
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.4e-06 Score=79.00 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=56.2
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecC
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTG 252 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~ 252 (321)
.+.+++.-.+..+++||++||++ |++..|.++++.+++ + .|.+|.. |.
T Consensus 189 ~~~la~~l~~~~vV~F~A~WC~~-Ck~l~p~le~lA~~l------~----~Vd~d~~-d~-------------------- 236 (291)
T 3kp9_A 189 AVGLAAHLRQIGGTMYGAYWCPH-CQDQKELFGAAFDQV------P----YVECSPN-GP-------------------- 236 (291)
T ss_dssp HHHHHHHHHHTTCEEEECTTCHH-HHHHHHHHGGGGGGS------C----EEESCSS-CS--------------------
T ss_pred HHHHHHHhCCCCEEEEECCCCHH-HHHHHHHHHHHHHHc------C----EEEEeec-Cc--------------------
Confidence 44555544444579999999998 999999998886433 1 2444421 10
Q ss_pred ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 253 SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 253 ~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+...+++++|++...|+ +++ +|+. +.|..+.+++.+.+
T Consensus 237 -~~~~~~la~~~gI~~vPT---------------~~i--~G~~---~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 237 -GTPQAQECTEAGITSYPT---------------WII--NGRT---YTGVRSLEALAVAS 275 (291)
T ss_dssp -SSCCCHHHHTTTCCSTTE---------------EEE--TTEE---EESCCCHHHHHHHT
T ss_pred -hhhHHHHHHHcCCcccCe---------------EEE--CCEE---ecCCCCHHHHHHHH
Confidence 011245688899999885 444 7764 55777777666544
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00014 Score=65.25 Aligned_cols=91 Identities=9% Similarity=0.112 Sum_probs=64.0
Q ss_pred CCCeEEEEEec--CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFGF--THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~Fwa--twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.+++|||.||+ +||+ ..|.+.++.+++.+. .++.++.|++|... .+..
T Consensus 21 ~~~~vlV~FyA~~pWCg-----l~P~~e~lA~~~~~~--~~v~~akVDvd~~g-----------------------~~~~ 70 (240)
T 2qc7_A 21 KSKFVLVKFDTQYPYGE-----KQDEFKRLAENSASS--DDLLVAEVGISDYG-----------------------DKLN 70 (240)
T ss_dssp GCSEEEEEECCSSCCSH-----HHHHHHHHHHHHTTC--TTEEEEEECCCCSS-----------------------SCCS
T ss_pred CCCCEEEEEeCCCCCCc-----chHHHHHHHHHhcCC--CCeEEEEEeCCccc-----------------------chhh
Confidence 36899999999 9998 689999999988642 25777777765310 0112
Q ss_pred HHHHHHcCce--EeecCCCCCCcccccceEEEEEcCCCe--EEEEeCCCCChhHHHHHHHHH
Q 020776 258 RNIARAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKME--FVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 258 ~~~a~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~--Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|+|. ..|+ ++++ ++|. ....|.|..+.+.+.+.|.+.
T Consensus 71 ~~l~~~~~V~~~~~PT--------------l~~f-~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 71 MELSEKYKLDKESYPV--------------FYLF-RDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp HHHHHHTTCCGGGCSE--------------EEEE-ETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCE--------------EEEE-eCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 4578889999 8885 4444 6676 345677888888887777654
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=97.66 E-value=9e-05 Score=69.47 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=63.5
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
+.++|.|++.||++ |....+.+.+++++|+++ +.++.|..|. .....++
T Consensus 136 ~~~~v~F~~~~~~~-~~~~~~~~~~~A~~~~~~----i~f~~vd~~~--------------------------~~~~~~~ 184 (361)
T 3uem_A 136 KTHILLFLPKSVSD-YDGKLSNFKTAAESFKGK----ILFIFIDSDH--------------------------TDNQRIL 184 (361)
T ss_dssp CEEEEEECCSSSSS-HHHHHHHHHHHHGGGTTT----CEEEEECTTS--------------------------GGGHHHH
T ss_pred CcEEEEEEeCCchh-HHHHHHHHHHHHHHccCc----eEEEEecCCh--------------------------HHHHHHH
Confidence 57789999999998 999999999999999754 6555554331 1224567
Q ss_pred HHcCceE--eecCCCCCCcccccceEEEEEcCCCeEEEE-e-CCCCChhHHHHHHHHHHH
Q 020776 262 RAYRVYY--MKTAEEDSDYLVDHSIVMYLMSPKMEFVKF-F-GKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 262 ~~ygv~~--~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~-~-~~~~~~~~l~~~l~~~L~ 317 (321)
+.||+.. .|+ +.+++.++....+ + .+..+.+.+.+.+.+.++
T Consensus 185 ~~fgi~~~~~P~--------------~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~ 230 (361)
T 3uem_A 185 EFFGLKKEECPA--------------VRLITLEEEMTKYKPESEELTAERITEFCHRFLE 230 (361)
T ss_dssp HHTTCCTTTCSE--------------EEEEECC--CCEECCSSCCCCHHHHHHHHHHHHT
T ss_pred HHcCCCccCCcc--------------EEEEEcCCcccccCCCccccCHHHHHHHHHHHhc
Confidence 7788875 565 7777765543333 2 357788888888877664
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=1.8e-05 Score=61.07 Aligned_cols=80 Identities=13% Similarity=0.265 Sum_probs=50.9
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
.+++|+.||++||++ |....+.|.++.. ++.+.-|++|.. + ..++
T Consensus 15 ~~~~v~~f~~~~C~~-C~~~~~~L~~l~~--------~i~~~~vdi~~~-~-------------------------~~el 59 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPL-CDEAKEVLQPYKD--------RFILQEVDITLP-E-------------------------NSTW 59 (100)
T ss_dssp CCCEEEEEECSSCHH-HHHHHHHTSTTSS--------SSEEEEEETTSS-T-------------------------THHH
T ss_pred CCCEEEEEeCCCCcc-hHHHHHHHHHhhh--------CCeEEEEECCCc-c-------------------------hHHH
Confidence 567889999999998 9998888876531 245555666511 1 1345
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++.|| ..+|+ +++ +|+.+ .. +..+.+++.+.|.+.
T Consensus 60 ~~~~g-~~vP~---------------l~~--~g~~~-~~-~g~~~~~l~~~l~~~ 94 (100)
T 1wjk_A 60 YERYK-FDIPV---------------FHL--NGQFL-MM-HRVNTSKLEKQLRKL 94 (100)
T ss_dssp HHHSS-SSCSE---------------EEE--SSSEE-EE-SSCCHHHHHHHHHSS
T ss_pred HHHHC-CCCCE---------------EEE--CCEEE-Ee-cCCCHHHHHHHHHHH
Confidence 67788 77774 445 46665 22 446777666655443
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=60.85 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=67.4
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee---CCCC-----------CCHHHHHHHHH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV---DPER-----------DTVEQVREYVK 241 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~---Dp~~-----------Dt~e~l~~~~~ 241 (321)
+..-.++++|+.|...+||+ |....+.|.++ . .+.+.++.+.+ .++. |....+.++..
T Consensus 9 ~~~~~a~~~vv~f~D~~Cp~-C~~~~~~l~~l----~---~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~ 80 (147)
T 3gv1_A 9 EVRGNGKLKVAVFSDPDCPF-CKRLEHEFEKM----T---DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMR 80 (147)
T ss_dssp EEETTCCEEEEEEECTTCHH-HHHHHHHHTTC----C---SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred eecCCCCEEEEEEECCCChh-HHHHHHHHhhc----C---ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33345799999999999998 99998887654 1 22344333343 2210 11112222222
Q ss_pred HhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 242 EFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 242 ~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
....+ ..-.....+...+++++|||..+|+ ++| .||++ ..|..+.+++.+.|.+.+
T Consensus 81 ~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt---------------~vi-~nG~~---i~G~~~~~~l~~~i~~~~ 138 (147)
T 3gv1_A 81 KGKFPVGGSICDNPVAETTSLGEQFGFNGTPT---------------LVF-PNGRT---QSGYSPMPQLEEIIRKNQ 138 (147)
T ss_dssp HCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCE---------------EEC-TTSCE---EESCCCTTHHHHHHHHTS
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhCCCccCE---------------EEE-ECCEE---eeCCCCHHHHHHHHHHHH
Confidence 11111 1112234567788899999999984 556 57875 336777887777776654
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00038 Score=62.16 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=56.8
Q ss_pred CCeEEEEEecCC--CCCCcHHHHHHHHHHHHHHhhhcCC-cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 181 GKWTVIYFGFTH--CPDICPDELQKLAAAVDKIKENSGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 181 GK~vLL~Fwatw--Cp~vC~~elp~L~~l~~~~~~~~g~-~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
+++|+|.||+.| |++ |....+.+.++.+.+....|. .+.++.++.| ..
T Consensus 25 ~~pv~v~~~~~~~~c~~-c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d----------------------------~~ 75 (243)
T 2hls_A 25 VNPVEVHVFLSKSGCET-CEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE----------------------------SD 75 (243)
T ss_dssp CSCEEEEEEECSSSCTT-HHHHHHHHHHHHHHSCEETTEESEEEEEEETT----------------------------TT
T ss_pred CCCEEEEEEeCCCCCCc-hHHHHHHHHHHHHhccCCCCCceeEEEEecCC----------------------------cC
Confidence 578999999999 998 999999999998775211010 1665555543 12
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
..+++.|||...|+ +.++ +| ..+|.+....+++.+.+...+
T Consensus 76 ~~~~~~~gv~~~Pt--------------~~i~--~g--~~~~~G~~~~~~l~~fv~~~l 116 (243)
T 2hls_A 76 SDKFSEFKVERVPT--------------VAFL--GG--EVRWTGIPAGEEIRALVEVIM 116 (243)
T ss_dssp HHHHHHTTCCSSSE--------------EEET--TT--TEEEESCCCTTHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCE--------------EEEE--CC--ceeEcCCCcHHHHHHHHHHHH
Confidence 45688899988775 4444 56 333434444555555555443
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00024 Score=60.78 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=28.2
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~ 211 (321)
++++||.||..|||+ |....|.|.++.+++
T Consensus 22 ~~~~vvef~d~~Cp~-C~~~~~~~~~~~~~~ 51 (185)
T 3feu_A 22 GMAPVTEVFALSCGH-CRNMENFLPVISQEA 51 (185)
T ss_dssp CCCSEEEEECTTCHH-HHHHGGGHHHHHHHH
T ss_pred CCCEEEEEECCCChh-HHHhhHHHHHHHHHh
Confidence 689999999999998 999999999998888
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00019 Score=61.58 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=31.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.++++||.||..|||+ |....|.+ .++.+++.+ ++.++.+.++
T Consensus 13 ~~~~~vvef~d~~Cp~-C~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~ 58 (189)
T 3l9v_A 13 VDAPAVVEFFSFYCPP-CYAFSQTMGVDQAIRHVLPQ----GSRMVKYHVS 58 (189)
T ss_dssp TTCCSEEEEECTTCHH-HHHHHHTSCHHHHHHTTCCT----TCCEEEEECS
T ss_pred CCCCEEEEEECCCChh-HHHHhHhccchHHHHHhCCC----CCEEEEEech
Confidence 4578999999999998 99999986 566665543 3444444443
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00033 Score=58.71 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~ 214 (321)
.++++||.|+.-.||+ |...-+.+.++.+++.++
T Consensus 20 ~~~~~vvEf~dy~Cp~-C~~~~~~~~~l~~~~~~~ 53 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPH-CNTFEPIIAQLKQQLPEG 53 (184)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHTSCTT
T ss_pred CCCCEEEEEECCCCHh-HHHHhHHHHHHHhhcCCc
Confidence 4688999999999998 999999999988888654
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0038 Score=53.33 Aligned_cols=114 Identities=9% Similarity=0.109 Sum_probs=73.1
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
.-.+|+++|++..+||++ |......+ .++.+-+++ ++++...+++. .+....+....+-.+ .
T Consensus 52 k~e~K~LlVyLhs~~~~~-~~~f~~~~L~~~~V~~~l~~----nfV~w~~dv~~----~e~~~~~~~~~~~~~------g 116 (178)
T 2ec4_A 52 ARDRKLLAIYLHHDESVL-TNVFCSQMLCAESIVSYLSQ----NFITWAWDLTK----DSNRARFLTMCNRHF------G 116 (178)
T ss_dssp TTTCCEEEEEEECSSCSH-HHHHHHHTTTCHHHHHHHHH----TEEEEEEECCS----HHHHHHHHHHHHHHT------C
T ss_pred hhhCcEEEEEEeCCCCcc-HHHHHHHhcCCHHHHHHHHc----CEEEEEEeCCC----chhhhhhhhhhhhhh------H
Confidence 456899999999999998 88765433 234444443 47666666542 233222222221000 0
Q ss_pred HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC---CeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 255 DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK---MEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 255 d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d---G~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
-......+.|++...|. +.+|+++ ++++.+..|..+++++.+.|.+.+++++
T Consensus 117 ~~~a~~~~~~~~~~~P~--------------l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~ 171 (178)
T 2ec4_A 117 SVVAQTIRTQKTDQFPL--------------FLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT 171 (178)
T ss_dssp HHHHHHHHHSCSTTCSE--------------EEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCe--------------EEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 01122235577777776 8899876 4788888899999999999999888764
|
| >3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00032 Score=59.48 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH-HHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL-AAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L-~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.+++++|.||..+||+ |....+.| .++.+++.. ++.+..+.++.
T Consensus 16 ~~~~~~ief~d~~CP~-C~~~~~~l~~~l~~~~~~----~v~~~~~~l~~ 60 (195)
T 3c7m_A 16 NADKTLIKVFSYACPF-CYKYDKAVTGPVSEKVKD----IVAFTPFHLET 60 (195)
T ss_dssp SCTTEEEEEECTTCHH-HHHHHHHTHHHHHHHTTT----TCEEEEEECTT
T ss_pred CCCcEEEEEEeCcCcc-hhhCcHHHHHHHHHhCCC----ceEEEEEecCc
Confidence 4678899999999998 99999999 888887753 34545555443
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00037 Score=50.57 Aligned_cols=21 Identities=10% Similarity=0.407 Sum_probs=17.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.||++|||+ |....+.|.+
T Consensus 3 v~~f~~~~C~~-C~~~~~~l~~ 23 (81)
T 1h75_A 3 ITIYTRNDCVQ-CHATKRAMEN 23 (81)
T ss_dssp EEEEECTTCHH-HHHHHHHHHH
T ss_pred EEEEcCCCChh-HHHHHHHHHH
Confidence 56799999998 9998777765
|
| >3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0049 Score=52.03 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH-HHHHHHHhhhcCCcEEEEEEeeC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL-AAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L-~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
.++++|+.|+...||. |....+.+ .++.++|.+...+.+++..+.+.
T Consensus 10 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~ 57 (186)
T 3bci_A 10 NGKPLVVVYGDYKCPY-CKELDEKVMPKLRKNYIDNHKVEYQFVNLAFL 57 (186)
T ss_dssp -CCCEEEEEECTTCHH-HHHHHHHHHHHHHHHTTTTTSSEEEEEECCCS
T ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHHHHHhccCCeEEEEEEecCcC
Confidence 4688999999999998 99999998 46777786542344554444443
|
| >3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.002 Score=55.36 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEee
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.++++|+.|+.-|||+ |....+.| .++.+++.++ ..++.+-+.+
T Consensus 20 ~~~~~vvef~d~~Cp~-C~~~~~~l~~~~~l~~~~~~~--v~~~~~~~~~ 66 (191)
T 3l9s_A 20 AGEPQVLEFFSFYCPH-CYQFEEVLHVSDNVKKKLPEG--TKMTKYHVEF 66 (191)
T ss_dssp CSSSCEEEEECTTCHH-HHHHHHTSCHHHHHHHHSCTT--CCEEEEECSS
T ss_pred CCCCeEEEEECCCChh-HHHhChhccchHHHHHhCCCC--cEEEEEeccc
Confidence 4589999999999998 99999987 5888887653 3454444444
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|+++|||+ |....+.|.++
T Consensus 14 v~~f~~~~C~~-C~~~~~~L~~~ 35 (105)
T 1kte_A 14 VVVFIKPTCPF-CRKTQELLSQL 35 (105)
T ss_dssp EEEEECSSCHH-HHHHHHHHHHS
T ss_pred EEEEEcCCCHh-HHHHHHHHHHc
Confidence 56689999998 99988887765
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0036 Score=44.21 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|+++||++ |....+.|+++
T Consensus 3 i~~y~~~~C~~-C~~~~~~l~~~ 24 (75)
T 1r7h_A 3 ITLYTKPACVQ-CTATKKALDRA 24 (75)
T ss_dssp EEEEECTTCHH-HHHHHHHHHHT
T ss_pred EEEEeCCCChH-HHHHHHHHHHc
Confidence 56789999998 99988877654
|
| >3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.005 Score=54.39 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.4
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHH-HHHHHHHhhhcCCcEEEEEEee
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKL-AAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L-~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
+.+-.++++|+.|+.-.||. |....+.+ .++.++|-+.. +|.++...+
T Consensus 34 ~G~~~A~vtIvef~Dy~CP~-C~~~~~~~~~~l~~~~~~~g--~V~~v~~~~ 82 (226)
T 3f4s_A 34 LGDPKAPILMIEYASLTCYH-CSLFHRNVFPKIKEKYIDTG--KMLYIFRHF 82 (226)
T ss_dssp ESCTTCSEEEEEEECTTCHH-HHHHHHHTHHHHHHHHTTTT--SEEEEEEEC
T ss_pred cCCCCCCEEEEEEECCCCHH-HHHHHHHHHHHHHHHcccCC--eEEEEEEeC
Confidence 44456789999999999998 99988864 67877885431 355554443
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0066 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=19.1
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHH
Q 020776 183 WTVIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 183 ~vLL~FwatwCp~vC~~elp~L~~l 207 (321)
..++.||.+|||+ |....+.|.+.
T Consensus 22 ~~v~ly~~~~Cp~-C~~ak~~L~~~ 45 (103)
T 3nzn_A 22 GKVIMYGLSTCVW-CKKTKKLLTDL 45 (103)
T ss_dssp SCEEEEECSSCHH-HHHHHHHHHHH
T ss_pred CeEEEEcCCCCch-HHHHHHHHHHc
Confidence 3455689999998 99988887765
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0005 Score=59.60 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.++++||.||+.|||+ |....|.| .++.+++.+ ++.+.-+.++-
T Consensus 112 ~~~~~vveFf~~~C~~-C~~~~p~~~~~~~l~~~~~~----~v~~~~~~v~~ 158 (197)
T 1un2_A 112 AGAPQVLEFFSFFCPH-CYQFEEVLHISDNVKKKLPE----GVKMTKYHVNF 158 (197)
T ss_dssp TTCCSEEEEECTTCHH-HHHHHHTSCHHHHHTTSSCT----TCCEEEEECSS
T ss_pred CCCCEEEEEECCCChh-HHHhCcccccHHHHHHHCCC----CCEEEEeccCc
Confidence 3689999999999998 99999998 888777753 35566666653
|
| >3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.018 Score=49.62 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=36.3
Q ss_pred CCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHH-HHHHHHHhhhcCCcEEEEEEee
Q 020776 170 DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL-AAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 170 ~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L-~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
+|..+ +.+-.++++|+.|+.-.||. |....+.+ ..+.++|.+.. +|.++...+
T Consensus 19 ~~~~~-~G~~~a~vtvvef~D~~CP~-C~~~~~~~~~~l~~~~~~~g--~v~~~~~~~ 72 (202)
T 3gha_A 19 KGQPV-LGKDDAPVTVVEFGDYKCPS-CKVFNSDIFPKIQKDFIDKG--DVKFSFVNV 72 (202)
T ss_dssp TTSCE-ESCTTCSEEEEEEECTTCHH-HHHHHHHTHHHHHHHTTTTT--SEEEEEEEC
T ss_pred CCCce-ecCCCCCEEEEEEECCCChh-HHHHHHHhhHHHHHHhccCC--eEEEEEEec
Confidence 44433 44456789999999999998 99988876 45666675431 466665554
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0053 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.8
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHH
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l 207 (321)
|+| |+.+|||+ |....+.|.++
T Consensus 29 vvv-f~~~~Cp~-C~~~~~~L~~~ 50 (130)
T 2cq9_A 29 VVI-FSKTSCSY-CTMAKKLFHDM 50 (130)
T ss_dssp EEE-EECSSCSH-HHHHHHHHHHH
T ss_pred EEE-EEcCCChH-HHHHHHHHHHc
Confidence 444 99999998 99988877765
|
| >3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=48.86 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=32.0
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 183 WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 183 ~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
..|.+|+..-||. |-...+.|.++.++|.+ ++.+......+++
T Consensus 3 ~~I~~~~D~~CP~-cy~~~~~l~~l~~~~~~--~v~v~~~p~~L~~ 45 (208)
T 3kzq_A 3 IKLYYVHDPMCSW-CWGYKPTIEKLKQQLPG--VIQFEYVVGGLAP 45 (208)
T ss_dssp EEEEEEECTTCHH-HHHHHHHHHHHHHHSCT--TSEEEEEECCSSC
T ss_pred eEEEEEECCCCch-hhhhhHHHHHHHHhCCC--CceEEEEeccccc
Confidence 3577888899998 99999999999998853 2455555444444
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=19.0
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l 207 (321)
+..|+.|+.+|||+ |....+.|.++
T Consensus 18 ~~~vv~f~~~~Cp~-C~~~~~~L~~~ 42 (114)
T 2hze_A 18 NNKVTIFVKYTCPF-CRNALDILNKF 42 (114)
T ss_dssp TTCEEEEECTTCHH-HHHHHHHHTTS
T ss_pred cCCEEEEEeCCChh-HHHHHHHHHHc
Confidence 34567799999998 99877776543
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.011 Score=43.55 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=17.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|+++|||+ |....+.|.+.
T Consensus 8 v~~y~~~~C~~-C~~~~~~L~~~ 29 (89)
T 2klx_A 8 IILYTRPNCPY-CKRARDLLDKK 29 (89)
T ss_dssp EEEESCSCCTT-THHHHHHHHHH
T ss_pred EEEEECCCChh-HHHHHHHHHHc
Confidence 56789999998 99887777654
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0069 Score=49.84 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.1
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHH
Q 020776 183 WTVIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 183 ~vLL~FwatwCp~vC~~elp~L~~l 207 (321)
.|+| |+.+|||+ |....+.|.++
T Consensus 50 ~Vvv-f~~~~Cp~-C~~~k~~L~~~ 72 (146)
T 2ht9_A 50 CVVI-FSKTSCSY-CTMAKKLFHDM 72 (146)
T ss_dssp SEEE-EECTTCHH-HHHHHHHHHHH
T ss_pred CEEE-EECCCChh-HHHHHHHHHHc
Confidence 3444 99999998 99988877765
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.017 Score=42.69 Aligned_cols=22 Identities=32% Similarity=0.853 Sum_probs=17.6
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|+.+|||+ |......|.++
T Consensus 14 v~ly~~~~Cp~-C~~~~~~L~~~ 35 (92)
T 3ic4_A 14 VLMYGLSTCPH-CKRTLEFLKRE 35 (92)
T ss_dssp SEEEECTTCHH-HHHHHHHHHHH
T ss_pred EEEEECCCChH-HHHHHHHHHHc
Confidence 55688999998 99977777664
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.008 Score=43.89 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.0
Q ss_pred EEEEEecCCCCCCcHHHHHHHHH
Q 020776 184 TVIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~ 206 (321)
.++.|+.+|||+ |......|.+
T Consensus 5 ~v~ly~~~~Cp~-C~~~~~~L~~ 26 (89)
T 3msz_A 5 KVKIYTRNGCPY-CVWAKQWFEE 26 (89)
T ss_dssp CEEEEECTTCHH-HHHHHHHHHH
T ss_pred EEEEEEcCCChh-HHHHHHHHHH
Confidence 367789999998 9987666654
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.082 Score=46.00 Aligned_cols=91 Identities=5% Similarity=0.082 Sum_probs=57.5
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
+.+++.|...||+. |....+.++++.++++++ +.++.+..|.+ ....+.
T Consensus 132 ~~~~l~f~~~~~~~-~~~~~~~~~~vAk~~k~~----i~F~~vd~~~~--------------------------~~~~~l 180 (227)
T 4f9z_D 132 QIHLLLIMNKASPE-YEENMHRYQKAAKLFQGK----ILFILVDSGMK--------------------------ENGKVI 180 (227)
T ss_dssp CEEEEEEECTTSTT-HHHHHHHHHHHHHHTTTT----CEEEEEETTSG--------------------------GGHHHH
T ss_pred ceEEEEEEcCCcch-HHHHHHHHHHHHHHhhCC----EEEEEeCCccH--------------------------hHHHHH
Confidence 34555666789998 999999999999999754 66665554311 112234
Q ss_pred HHcCce--EeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChhHHHHHHHHHHH
Q 020776 262 RAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 262 ~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~~l~~~l~~~L~ 317 (321)
+.||+. ..| .+.+++..+...+.+ .+..+.+.+.+-+...++
T Consensus 181 ~~fgl~~~~~P--------------~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 181 SFFKLKESQLP--------------ALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp HHTTCCGGGCS--------------EEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred HHcCCCcccCC--------------EEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence 566665 233 377777665544444 356777777776666553
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.075 Score=40.10 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=15.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
|+.|..+|||+ |...-..|.+
T Consensus 6 I~vYs~~~Cp~-C~~aK~~L~~ 26 (92)
T 2lqo_A 6 LTIYTTSWCGY-CLRLKTALTA 26 (92)
T ss_dssp EEEEECTTCSS-HHHHHHHHHH
T ss_pred EEEEcCCCCHh-HHHHHHHHHh
Confidence 56678999998 9886555543
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0099 Score=46.84 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=15.0
Q ss_pred EEEEecCCCCCCcHHH-HHHHH
Q 020776 185 VIYFGFTHCPDICPDE-LQKLA 205 (321)
Q Consensus 185 LL~FwatwCp~vC~~e-lp~L~ 205 (321)
|+.|+.+|||+ |... .+.|.
T Consensus 27 Vvvf~~~~Cp~-C~~alk~~L~ 47 (118)
T 3c1r_A 27 IFVASKTYCPY-CHAALNTLFE 47 (118)
T ss_dssp EEEEECSSCHH-HHHHHHHHHT
T ss_pred EEEEEcCCCcC-HHHHHHHHHH
Confidence 45599999998 9987 44443
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.025 Score=40.51 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|+.+|||+ |....+.|.+.
T Consensus 3 i~~y~~~~C~~-C~~~~~~l~~~ 24 (82)
T 1fov_A 3 VEIYTKETCPY-CHRAKALLSSK 24 (82)
T ss_dssp EEEEECSSCHH-HHHHHHHHHHH
T ss_pred EEEEECCCChh-HHHHHHHHHHC
Confidence 45688999998 99887777653
|
| >2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.15 Score=43.53 Aligned_cols=41 Identities=5% Similarity=-0.058 Sum_probs=28.5
Q ss_pred cccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 278 y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+.+...|+++++ .+|+.+..+.|..+.+.+.+.|.++++++
T Consensus 172 ~gv~g~Pt~~i~-~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 172 WGISGFPALVVE-SGTDRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp TTCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred cCCcccceEEEE-ECCEEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 444555555544 47877656678888899999888887653
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.021 Score=44.15 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=17.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
|+.|+.+|||+ |....+.|.++
T Consensus 21 v~vy~~~~Cp~-C~~~~~~L~~~ 42 (113)
T 3rhb_A 21 VVIYSKTWCSY-CTEVKTLFKRL 42 (113)
T ss_dssp EEEEECTTCHH-HHHHHHHHHHT
T ss_pred EEEEECCCChh-HHHHHHHHHHc
Confidence 55689999998 99877777654
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.044 Score=41.75 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=19.6
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l 207 (321)
+.-|+.|+.+|||+ |......|.+.
T Consensus 15 ~~~v~vy~~~~Cp~-C~~ak~~L~~~ 39 (99)
T 3qmx_A 15 SAKIEIYTWSTCPF-CMRALALLKRK 39 (99)
T ss_dssp CCCEEEEECTTCHH-HHHHHHHHHHH
T ss_pred CCCEEEEEcCCChh-HHHHHHHHHHC
Confidence 34456789999998 99988877765
|
| >3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.09 Score=45.49 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=36.7
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHH-HHhhhcCCcEEEEEEee
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVD-KIKENSGIDIVPAFISV 226 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~-~~~~~~g~~v~vV~IS~ 226 (321)
..+.+-.++++|+.|..-.||. |....+.+....+ +|-+. .+|.+++..+
T Consensus 8 ~~~G~~~a~vtivef~D~~Cp~-C~~~~~~~~~~l~~~~i~~--g~v~~v~r~~ 58 (205)
T 3gmf_A 8 HLLGNPAAKLRLVEFVSYTCPH-CSHFEIESEGQLKIGMVQP--GKGAIEVRNF 58 (205)
T ss_dssp EEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTTT--TSEEEEEEEC
T ss_pred ceecCCCCCeEEEEEECCCCHH-HHHHHHHHHHHHHHHhccC--CeEEEEEEeC
Confidence 3345556889999999999998 9999888866655 77433 2577776665
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.046 Score=40.23 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=16.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|+.+||++ |....+.|.+
T Consensus 8 v~ly~~~~C~~-C~~~~~~L~~ 28 (92)
T 2khp_A 8 VIIYTRPGCPY-CARAKALLAR 28 (92)
T ss_dssp EEEEECTTCHH-HHHHHHHHHH
T ss_pred EEEEECCCChh-HHHHHHHHHH
Confidence 56789999998 9987776664
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.054 Score=41.32 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=17.3
Q ss_pred CeEEEEEec-----CCCCCCcHHHHHHHHHH
Q 020776 182 KWTVIYFGF-----THCPDICPDELQKLAAA 207 (321)
Q Consensus 182 K~vLL~Fwa-----twCp~vC~~elp~L~~l 207 (321)
..|+| |+. +|||+ |....+.|.++
T Consensus 17 ~~vvv-f~~g~~~~~~C~~-C~~~~~~L~~~ 45 (105)
T 2yan_A 17 ASVML-FMKGNKQEAKCGF-SKQILEILNST 45 (105)
T ss_dssp SSEEE-EESBCSSSBCTTH-HHHHHHHHHHH
T ss_pred CCEEE-EEecCCCCCCCcc-HHHHHHHHHHC
Confidence 34555 555 99998 99877777655
|
| >3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.047 Score=49.64 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=32.5
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
-.|+.+|+.|+...||+ |+...+.|.+..++ ..|.++.+.+
T Consensus 145 ~~gk~~I~vFtDp~CPY-Ckkl~~~l~~~l~~------~~Vr~i~~Pi 185 (273)
T 3tdg_A 145 ANKDKILYIVSDPMCPH-CQKELTKLRDHLKE------NTVRMVVVGW 185 (273)
T ss_dssp GGTTCEEEEEECTTCHH-HHHHHHTHHHHHHH------CEEEEEECCC
T ss_pred CCCCeEEEEEECcCChh-HHHHHHHHHHHhhC------CcEEEEEeec
Confidence 35789999999999998 99999999976543 2566666654
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.042 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=15.5
Q ss_pred EEEEecCCCCCCcHHH-HHHHHH
Q 020776 185 VIYFGFTHCPDICPDE-LQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~e-lp~L~~ 206 (321)
|+.|+.+|||+ |... .+.|.+
T Consensus 39 Vvvy~~~~Cp~-C~~a~k~~L~~ 60 (129)
T 3ctg_A 39 VFVAAKTYCPY-CKATLSTLFQE 60 (129)
T ss_dssp EEEEECTTCHH-HHHHHHHHHTT
T ss_pred EEEEECCCCCc-hHHHHHHHHHh
Confidence 56789999998 9977 444443
|
| >2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.61 Score=42.21 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=27.7
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
+..|..|...+||+ |...-..|.++..++ ++..+.+.+|
T Consensus 43 ~~~VelyTs~gCp~-C~~Ak~lL~~~~~~~------~vi~l~~~v~ 81 (270)
T 2axo_A 43 KGVVELFTSQGCAS-CPPADEALRKMIQKG------DVVGLSYHVD 81 (270)
T ss_dssp CCEEEEEECTTCTT-CHHHHHHHHHHHHHT------SSEEEEEECS
T ss_pred CcEEEEEeCCCCCC-hHHHHHHHHHhhccC------CeeeEEEEEE
Confidence 35777899999998 999888888776543 3444455544
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.15 Score=39.47 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=16.2
Q ss_pred EEEecCCCCCCcHHHHHHHHHH
Q 020776 186 IYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l 207 (321)
+.|+.+|||+ |......|.++
T Consensus 20 ~vy~~~~Cp~-C~~ak~~L~~~ 40 (114)
T 3h8q_A 20 VIFSKSYCPH-STRVKELFSSL 40 (114)
T ss_dssp EEEECTTCHH-HHHHHHHHHHT
T ss_pred EEEEcCCCCc-HHHHHHHHHHc
Confidence 3489999998 98877766654
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=91.56 E-value=0.25 Score=37.81 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=17.9
Q ss_pred CCeEEEEEec----CCCCCCcHHHHHHHHHH
Q 020776 181 GKWTVIYFGF----THCPDICPDELQKLAAA 207 (321)
Q Consensus 181 GK~vLL~Fwa----twCp~vC~~elp~L~~l 207 (321)
...|+|++.+ +|||+ |......|.+.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~-C~~ak~~L~~~ 43 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGF-SKQILEILNST 43 (109)
T ss_dssp TSSEEEEESSTTTCCCSST-HHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCCCch-HHHHHHHHHHc
Confidence 3346665554 99998 99877777654
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=44.08 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 255 DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 255 d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+....++++|||...|+ +++++++|++..........+.+...|
T Consensus 192 ~~~~~l~~~f~v~~~Ps--------------lvl~~~~g~~~~~~~~~~~r~~~~~~l 235 (244)
T 3q6o_A 192 NTEANVVRKFGVTDFPS--------------CYLLFRNGSVSRVPVLMESRSFYTAYL 235 (244)
T ss_dssp TTCHHHHHHHTCCCSSE--------------EEEEETTSCEEECCCSSSSHHHHHHHH
T ss_pred CchHHHHHHcCCCCCCe--------------EEEEeCCCCeEeeccccccHHHHHHHH
Confidence 34467899999998887 899999999988764444434333333
|
| >2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=2.3 Score=35.82 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=24.0
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
.|.+|+-.-||. |-.-.+.|.++.+++.
T Consensus 2 ~I~~~~D~~CP~-cy~~~~~l~~~~~~~~ 29 (203)
T 2imf_A 2 IVDFYFDFLSPF-SYLANQRLSKLAQDYG 29 (203)
T ss_dssp EEEEEECTTCHH-HHHHHHHHHHHHHHHC
T ss_pred eEEEEEeCCCHH-HHHHHHHHHHHHHHcC
Confidence 356778899998 9999999999998873
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.81 E-value=3.4 Score=32.44 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~ 211 (321)
.+++||-||.+||.+ | .+.+.++.+.+
T Consensus 39 ~~v~VVGfF~~~~~~-~---~~~F~~~A~~~ 65 (124)
T 2l4c_A 39 TEVAVIGFFQDLEIP-A---VPILHSMVQKF 65 (124)
T ss_dssp SSEEEEEECSCTTST-H---HHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCh-h---HHHHHHHHHhC
Confidence 578999999999998 8 45566666666
|
| >1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A | Back alignment and structure |
|---|
Probab=86.83 E-value=0.44 Score=38.01 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=36.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
+..|+.++|+. |......|.+. |..+.++ .++.+..+.++++++.+..+..+.
T Consensus 3 i~lY~~~~C~~-C~ka~~~L~~~--------gi~y~~~--di~~~~~~~~el~~~l~~~~~~~~ 55 (132)
T 1z3e_A 3 VTLYTSPSCTS-CRKARAWLEEH--------EIPFVER--NIFSEPLSIDEIKQILRMTEDGTD 55 (132)
T ss_dssp EEEEECTTCHH-HHHHHHHHHHT--------TCCEEEE--ETTTSCCCHHHHHHHHHTCSSCGG
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCceEEE--EccCCCccHHHHHHHHHHcCCCHH
Confidence 45678899998 99877666643 5566554 554444567899999887665543
|
| >3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=86.68 E-value=0.69 Score=36.39 Aligned_cols=55 Identities=11% Similarity=0.337 Sum_probs=38.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
+..|..++|+. |+.....|++- |..+.++ .+..+..+.++++.+.+..+.++.-+
T Consensus 5 i~iY~~~~C~~-c~ka~~~L~~~--------gi~~~~~--di~~~~~~~~eL~~~l~~~g~~~~~l 59 (120)
T 3fz4_A 5 LTFYEYPKCST-CRRAKAELDDL--------AWDYDAI--DIKKNPPAASLIRNWLENSGLELKKF 59 (120)
T ss_dssp EEEEECSSCHH-HHHHHHHHHHH--------TCCEEEE--ETTTSCCCHHHHHHHHHHSCCCGGGG
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCceEEE--EeccCchhHHHHHHHHHHcCCCHHHH
Confidence 44567899997 99877666543 5566655 44433467899999999998665433
|
| >3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12 | Back alignment and structure |
|---|
Probab=86.34 E-value=0.45 Score=37.40 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=36.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
+..|..++|+. |......|++. |..+.++ .++.+..+.++++++....+..+.
T Consensus 2 i~iY~~~~C~~-c~ka~~~L~~~--------gi~~~~~--di~~~~~~~~el~~~l~~~~~~~~ 54 (120)
T 3l78_A 2 VTLFLSPSCTS-CRKARAWLNRH--------DVVFQEH--NIMTSPLSRDELLKILSYTENGTE 54 (120)
T ss_dssp EEEEECSSCHH-HHHHHHHHHHT--------TCCEEEE--ETTTSCCCHHHHHHHHHHCSSTHH
T ss_pred EEEEeCCCCHH-HHHHHHHHHHc--------CCCeEEE--ecccCCCcHHHHHHHHhhcCCCHH
Confidence 45677899998 98876666542 5556554 554444678999999998776553
|
| >3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=85.13 E-value=0.5 Score=37.20 Aligned_cols=55 Identities=16% Similarity=0.366 Sum_probs=38.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
+..|..++|+. |......|.+- |..+.++-|.-| ..+.+++.++.+..+.++.-+
T Consensus 6 i~iY~~p~C~~-c~ka~~~L~~~--------gi~~~~~di~~~--~~~~~eL~~~l~~~g~~~~~l 60 (120)
T 3gkx_A 6 TLFLQYPACST-CQKAKKWLIEN--------NIEYTNRLIVDD--NPTVEELKAWIPLSGLPVKKF 60 (120)
T ss_dssp CEEEECTTCHH-HHHHHHHHHHT--------TCCCEEEETTTT--CCCHHHHHHHHHHHTSCGGGG
T ss_pred EEEEECCCChH-HHHHHHHHHHc--------CCceEEEecccC--cCCHHHHHHHHHHcCCCHHHe
Confidence 45667899997 98877666542 556655544434 467899999999998665443
|
| >3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=82.50 E-value=1.1 Score=37.60 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=32.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
.++++|+.|..-.||. |....+.+.++.+++. ..+|.++...
T Consensus 13 ~a~vtiv~f~D~~Cp~-C~~~~~~~~~~l~~~~---~g~v~~v~r~ 54 (182)
T 3gn3_A 13 HGPRLFEVFLEPTCPF-SVKAFFKLDDLLAQAG---EDNVTVRIRL 54 (182)
T ss_dssp CCSEEEEEEECTTCHH-HHHHHTTHHHHHHHHC---TTTEEEEEEE
T ss_pred CCCEEEEEEECCCCHh-HHHHHHHHHHHHHHhC---CCCEEEEEEE
Confidence 4688999999999998 9999999988877762 1246666554
|
| >2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A | Back alignment and structure |
|---|
Probab=81.48 E-value=0.58 Score=37.69 Aligned_cols=24 Identities=25% Similarity=0.312 Sum_probs=16.9
Q ss_pred CeEEEEEec----CCCCCCcHHHHHHHHH
Q 020776 182 KWTVIYFGF----THCPDICPDELQKLAA 206 (321)
Q Consensus 182 K~vLL~Fwa----twCp~vC~~elp~L~~ 206 (321)
..|+||.++ +|||+ |......|.+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~-C~~ak~~L~~ 62 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGF-SAQAVQALAA 62 (135)
T ss_dssp CSEEEEESBCSSSBSSHH-HHHHHHHHHT
T ss_pred CCEEEEEEecCCCCCCcc-HHHHHHHHHH
Confidence 346666665 79998 9986666654
|
| >1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A | Back alignment and structure |
|---|
Probab=81.47 E-value=2.4 Score=30.53 Aligned_cols=21 Identities=19% Similarity=0.611 Sum_probs=15.2
Q ss_pred EEEEecC----CCCCCcHHHHHHHHH
Q 020776 185 VIYFGFT----HCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~Fwat----wCp~vC~~elp~L~~ 206 (321)
++.|+.+ |||. |......|++
T Consensus 2 v~iY~~~~~~~~Cp~-C~~ak~~L~~ 26 (87)
T 1aba_A 2 FKVYGYDSNIHKCGP-CDNAKRLLTV 26 (87)
T ss_dssp EEEEECCTTTSCCHH-HHHHHHHHHH
T ss_pred EEEEEeCCCCCcCcc-HHHHHHHHHH
Confidence 3457889 9998 9876665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 321 | ||||
| d1wp0a1 | 160 | c.47.1.10 (A:138-297) Thioredoxin-like protein Sco | 2e-30 | |
| d2b7ka1 | 169 | c.47.1.10 (A:111-279) Thioredoxin-like protein Sco | 1e-28 | |
| d1xzoa1 | 172 | c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 | 2e-19 | |
| d1e2ya_ | 167 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 1e-06 | |
| d1n8ja_ | 186 | c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC | 1e-06 | |
| d1uula_ | 194 | c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi | 2e-06 | |
| d1prxa_ | 220 | c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa | 4e-06 | |
| d2bmxa1 | 169 | c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase | 7e-06 | |
| d1i5ga_ | 144 | c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul | 8e-06 | |
| d1qmva_ | 197 | c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox | 9e-06 | |
| d1zyea1 | 158 | c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) | 5e-05 | |
| d1q98a_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus i | 8e-05 | |
| d2zcta1 | 237 | c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni | 2e-04 | |
| d2h01a1 | 170 | c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio | 4e-04 | |
| d1qxha_ | 164 | c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia c | 5e-04 | |
| d1xvqa_ | 166 | c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium | 7e-04 | |
| d1zofa1 | 170 | c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He | 8e-04 | |
| d1jfua_ | 176 | c.47.1.10 (A:) Membrane-anchored thioredoxin-like | 0.001 | |
| d1we0a1 | 166 | c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase | 0.001 | |
| d2fy6a1 | 143 | c.47.1.10 (A:33-175) Peptide methionine sulfoxide | 0.001 | |
| d1o73a_ | 144 | c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei | 0.004 | |
| d1zzoa1 | 134 | c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri | 0.004 |
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (276), Expect = 2e-30
Identities = 81/160 (50%), Positives = 113/160 (70%), Gaps = 2/160 (1%)
Query: 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGID-IV 220
GPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K+ VD+I + + +
Sbjct: 1 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLT 60
Query: 221 PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEE-DSDYL 279
P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY ++ D DY+
Sbjct: 61 PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 120
Query: 280 VDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
VDH+I+MYL+ P EF+ +FG+N +A I ++ Y
Sbjct: 121 VDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 160
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Score = 106 bits (265), Expect = 1e-28
Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
GK ++GGPF L + G TEK+ LGK+++IYFGF++CPDICPDEL KL ++ +
Sbjct: 1 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY 60
Query: 216 GIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED 275
GI + P FI+ DP RD+ ++EY+ +FHP ++GLTG+ DE++N + YRVY+
Sbjct: 61 GITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVK 120
Query: 276 S--DYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
DYLVDHSI YLM P+ +FV G+N D + D I++ +K Y
Sbjct: 121 PGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Score = 82.0 bits (201), Expect = 2e-19
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Query: 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222
PF N DGKNV+ + G+ + F FT+C ICP + K+K + + +
Sbjct: 13 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 72
Query: 223 FISVDPERDTVEQVREYVKEFHPK---LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYL 279
F VDPE D +Q++++ + LTG A + + + + +
Sbjct: 73 FS-VDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIE-EFALKSFKAIVKKPEGEDQ 130
Query: 280 VDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
V H YL+ P + +K + + D II ++K
Sbjct: 131 VIHQSSFYLVGPDGKVLKDYNGVENTP--YDDIISDVKSAST 170
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Score = 45.7 bits (107), Expect = 1e-06
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 11/142 (7%)
Query: 156 GKAAIGGP---FK----LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAV 208
G A + P F + N K V+ + GK+ V+ F + D ++
Sbjct: 1 GAAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVL---FFYPMDFTFVCPTEIIQFS 57
Query: 209 DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
D K + I+ S D E ++ K+ + + D+ + IARAY V
Sbjct: 58 DDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLD 117
Query: 269 MKTAEED-SDYLVDHSIVMYLM 289
+ +++D + + +
Sbjct: 118 EDSGVAYRGVFIIDPNGKLRQI 139
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Score = 46.0 bits (108), Expect = 1e-06
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%)
Query: 155 VGKAAIGGPFKL---INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211
+ PFK N + VTEKD G+W+V +F + P EL +A +++
Sbjct: 3 INTKIK--PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEEL 60
Query: 212 KENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT 271
++ + +S D K + D + R +
Sbjct: 61 QKL---GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIG---DPTGALTRNFDNMREDE 114
Query: 272 AEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317
D +++ P+ + A ++++IK
Sbjct: 115 GLADRA--------TFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 152
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 18/169 (10%)
Query: 156 GKAAIGGP---FK----LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAV 208
G+A P F + N K V + GKW V++F + D ++
Sbjct: 1 GEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFF---YPMDFTFVCPTEICQFS 57
Query: 209 DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
D++KE S I S+D E + K + + D+ + I ++Y V
Sbjct: 58 DRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVL- 116
Query: 269 MKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317
+ V + + +++ PK + + V D ++ +K
Sbjct: 117 ------KEEDGVAYRGL-FIIDPKQNLRQITVNDLPVGRDVDEALRLVK 158
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 4e-06
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 8/165 (4%)
Query: 155 VGKAAIGGP-FKLINHDGKNVTEKDFLG-KWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212
+G A P F+ G+ + DFLG W +++ +C EL + A +
Sbjct: 3 LGDVA---PNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 58
Query: 213 ENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTA 272
+ + I + SV+ + + Y E + + D R +A +
Sbjct: 59 KRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 118
Query: 273 EEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317
+E + + ++ P + D I++ +
Sbjct: 119 DEKGMPVTARVVFVF--GPDKKLKLSILYPATTGRNFDEILRVVI 161
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.5 bits (101), Expect = 7e-06
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)
Query: 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214
+G K +T + GKW V+ F D ++AA E
Sbjct: 18 IGGDLSKVDAKQPGDYFTTITSDEHPGKWRVV---FFWPKDFTFVCPTEIAAFSKLNDEF 74
Query: 215 SGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEE 274
D +S+D E + ++ L+ D R +++A V +
Sbjct: 75 EDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLS---DIKRELSQAAGVLNADGVAD 131
Query: 275 DSDYLVD 281
++VD
Sbjct: 132 RVTFIVD 138
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Score = 42.9 bits (100), Expect = 8e-06
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 7/108 (6%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
++ ++ GK YF + CP Q + ++ +
Sbjct: 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK---NFEVML 67
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT 271
IS D ++ E ++Y + + + + + V + T
Sbjct: 68 ISWD---ESAEDFKDYYAKMPWLALPF-EDRKGMEFLTTGFDVKSIPT 111
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 9e-06
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 156 GKAAIGGP---FKL---INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVD 209
G A IG P FK ++ K V D+ GK+ V++F +CP E+ A +
Sbjct: 3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEII---AFSN 59
Query: 210 KIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM 269
+ ++ + +SVD + + + KE + + D R ++ Y V
Sbjct: 60 RAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT 119
Query: 270 K 270
Sbjct: 120 D 120
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225
+++ + K ++ DF GK+ V++F + D ++ A DK E ++ +S
Sbjct: 11 VVSGEFKEISLDDFKGKYLVLFF---YPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVS 67
Query: 226 VDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK 270
VD + + K + + D + I+R Y V
Sbjct: 68 VDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEG 112
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Score = 40.2 bits (93), Expect = 8e-05
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211
P VG+ F L+ +D +V DF K V+ + +C ++K K+
Sbjct: 16 PQVGEIV---ENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL 72
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFL--GKWTVIYF-GFTHCPDICPDELQKLAAAV 208
P +G+ P ++ G ++ GKW V++ P +C E
Sbjct: 1 PLIGERF---PEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTP-VCTTEFVS---FA 53
Query: 209 DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
+ ++ + + +SVD ++ + ++ D +AR + +
Sbjct: 54 RRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPF-PIIADPQGTVARRLGLLH 112
Query: 269 M 269
Sbjct: 113 A 113
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Score = 38.3 bits (88), Expect = 4e-04
Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Query: 168 NHDGKNVTEKDFLGKW-TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226
++ V+ DF+GK ++YF + D ++ A + ++ SV
Sbjct: 13 DNTFGEVSLSDFIGKKYVLLYF---YPLDFTFVCPSEIIALDKALDSFKERNVELLGCSV 69
Query: 227 DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVM 286
D + + + + + I T D ++IAR+Y V + ++ + L+D V+
Sbjct: 70 DSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVV 129
Query: 287 YLMSPKMEFVK 297
+ +
Sbjct: 130 QHLLVNNLALG 140
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Score = 37.9 bits (87), Expect = 5e-04
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 14/119 (11%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211
P G A F L+ D +VT F GK V+ + +C ++K +I
Sbjct: 18 PQAGSKA---QTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI 74
Query: 212 KENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK 270
+ V IS D + +T S +AY V
Sbjct: 75 -----DNTVVLCISADL-----PFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIAD 123
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.6 bits (86), Expect = 7e-04
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 153 PSVGKAAIGGP-FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL 204
P+VG A P F L D ++ F GK ++ + +C ++
Sbjct: 17 PAVGSPA---PAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTF 66
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Score = 37.1 bits (85), Expect = 8e-04
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 11/134 (8%)
Query: 155 VGKAAIGGP-FKL-----INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAV 208
V K A P FK N ++ LGK VI F D ++ A
Sbjct: 3 VTKLA---PDFKAPAVLGNNEVDEHFELSKNLGKNGVIL--FFWPKDFTFVCPTEIIAFD 57
Query: 209 DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268
++K+ +S+D E+ V++ + D ++I+R Y V +
Sbjct: 58 KRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF 117
Query: 269 MKTAEEDSDYLVDH 282
+ +L+D
Sbjct: 118 EEAIALRGAFLIDK 131
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 36.9 bits (84), Expect = 0.001
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICP 198
+ DGK DF GK ++ T C
Sbjct: 39 LAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRK 73
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Score = 36.8 bits (84), Expect = 0.001
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 155 VGKAAIGGPFKLI----NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK 210
+G PF+ D VTE D GKW+++ F + D +L +
Sbjct: 3 IGTEVQ--PFRAQAFQSGKDFFEVTEADLKGKWSIVVF---YPADFSFVCPTELEDVQKE 57
Query: 211 IKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK 270
E + + +S + I D + I+R + V +
Sbjct: 58 YAELKKLGVEVYSVS---TDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEE 114
Query: 271 T 271
T
Sbjct: 115 T 115
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Score = 36.4 bits (83), Expect = 0.001
Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 4/108 (3%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
L D + + K T+I F + CP + Q + + S +++
Sbjct: 6 STLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQT--EKWAQDAKFSSANLITVA 63
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT 271
+++ + + + IA++ + +
Sbjct: 64 SPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNG--GTIAQSLNISVYPS 109
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Score = 34.9 bits (79), Expect = 0.004
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 7/108 (6%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
+ V+ +GK +YF + CP +
Sbjct: 11 ATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAK---NFEVVL 67
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKT 271
IS D + +Y + + + + + + V + T
Sbjct: 68 ISWD---ENESDFHDYYGKMPWLALPF-DQRSTVSELGKTFGVESIPT 111
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 34.7 bits (78), Expect = 0.004
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICP 198
F DG + + LGK V++F CP
Sbjct: 8 FSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQG 42
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 321 | |||
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.95 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.95 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.93 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.93 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.93 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 99.92 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.91 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 99.91 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.91 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 99.9 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 99.9 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 99.9 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 99.9 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.89 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.89 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.88 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 99.88 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.88 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 99.88 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 99.88 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 99.87 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.87 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.85 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.85 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 99.84 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 99.84 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 99.84 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 99.83 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 99.83 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 99.82 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 99.81 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 99.81 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 99.81 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 99.79 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 99.77 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.42 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 99.4 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.4 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.36 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.36 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.36 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.35 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.34 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.33 | |
| d1tp9a1 | 162 | Plant peroxiredoxin {Western balsam poplar(Populus | 99.33 | |
| d1nm3a2 | 163 | N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus | 99.3 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.27 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.27 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.27 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.26 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.24 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.22 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.2 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.18 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.17 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.1 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 99.09 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.05 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.03 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.03 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.01 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.91 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 98.89 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.85 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.85 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 98.83 | |
| d1xiya1 | 179 | 1-Cys peroxiredoxin {Malaria parasite (Plasmodium | 98.69 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 98.53 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 98.52 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 98.52 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 98.38 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.99 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 97.85 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.54 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.53 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.13 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.07 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.06 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 96.97 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 96.62 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 91.4 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 91.1 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 89.35 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 85.12 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 83.84 |
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=2.8e-27 Score=201.81 Aligned_cols=153 Identities=25% Similarity=0.427 Sum_probs=122.6
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
++.++| +|+|+|.+|+.+++++++||++||+||+||||++|+.+++.|.++++++++. +.++.+|+||+||++|+++
T Consensus 7 ~~~~~p--~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~-~~~v~~v~isiDp~~Dtp~ 83 (172)
T d1xzoa1 7 LNYEVE--PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRIISFSVDPENDKPK 83 (172)
T ss_dssp CCEECC--CCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHT-TCCCEEEEEESCTTTCCHH
T ss_pred CCCcCC--CeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccc-cccccccccccccccchHH
Confidence 455556 9999999999999999999999999999999877999999999999999766 7789999999999999999
Q ss_pred HHHHHHHHhCCC---ceeecCCh-HHHHH-HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC--ChhH
Q 020776 235 QVREYVKEFHPK---LIGLTGSP-DEIRN-IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN--DVNS 307 (321)
Q Consensus 235 ~l~~~~~~~~~~---~~~l~~~~-d~~~~-~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~--~~~~ 307 (321)
.+++|++.++.+ |.++++.. ..... ..+.|++..... .+++.+.|++.+||||++|+|+..|.+.. ..++
T Consensus 84 ~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~ 160 (172)
T d1xzoa1 84 QLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKP---EGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDD 160 (172)
T ss_dssp HHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCC---SSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHH
T ss_pred HHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEecc---CCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHH
Confidence 999999999875 45666532 33333 346677654332 34567899999999999999998875533 3344
Q ss_pred HHHHHH
Q 020776 308 LADGII 313 (321)
Q Consensus 308 l~~~l~ 313 (321)
+.++|+
T Consensus 161 l~~dik 166 (172)
T d1xzoa1 161 IISDVK 166 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.4e-27 Score=194.65 Aligned_cols=158 Identities=53% Similarity=1.051 Sum_probs=143.0
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhc-CCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS-GIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~-g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
+||+|+|.+|+++++++|+||++||+||+||||.+|..+++.|.++++++++.. ...+.++.++.||.+|+++...++.
T Consensus 1 gdF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1wp0a1 1 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV 80 (160)
T ss_dssp CCCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred CCeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHH
Confidence 489999999999999999999999999999999889999999999999987762 2356788899999999999999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCC-CCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE-EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~-~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
..++.+|..++........+.+.|++...+... .+.+|.+.|++.+||||++|+|+.+|.+..+++++.++|.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~~ 160 (160)
T d1wp0a1 81 KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 160 (160)
T ss_dssp HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 999999999998888889999999998887543 3567999999999999999999999988889999999999999864
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.7e-26 Score=199.95 Aligned_cols=143 Identities=19% Similarity=0.246 Sum_probs=119.9
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee-CCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-DPE 229 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~-Dp~ 229 (321)
+...+|+++| +|+|+|.+|+.++|++++||+|||+||++|||+ |+.++|.|++++++|+++ +.+|+|+. |+.
T Consensus 4 p~l~vG~~aP--dF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~-C~~~~p~l~~l~~~y~~~----v~~v~i~snd~~ 76 (187)
T d2cvba1 4 PELPLESPLI--DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPY-VKGSIGELVALAERYRGK----VAFVGINANDYE 76 (187)
T ss_dssp CCCCTTCBCC--CCEEECTTSCEEEGGGCCSSEEEEEEECSSCHH-HHTTHHHHHHHHHHTTTT----EEEEEEECCCTT
T ss_pred CCCCCCCccC--ccEeecCCCCEEEHHHhCCCeEEEEEeCCCCcc-chhhhhhhhhhhhhcccc----ceeeeeeccccc
Confidence 4578899999 999999999999999999999999999999998 999999999999999753 77777754 222
Q ss_pred ---CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC----
Q 020776 230 ---RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN---- 302 (321)
Q Consensus 230 ---~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~---- 302 (321)
.++++.+++|+++++++|+++ .|...+++++|++..+|+ +||||++|+|+++-.-+
T Consensus 77 ~~~~~~~e~~~~~~~~~~~~~p~l---~D~~~~~~~~~~v~~~P~--------------~~liD~~G~i~y~G~idd~~~ 139 (187)
T d2cvba1 77 KYPEDAPEKMAAFAEEHGIFFPYL---LDETQEVAKAYRALRTPE--------------VFLFDERRLLRYHGRVNDNPK 139 (187)
T ss_dssp TCGGGSHHHHHHHHHHHTCCSCEE---ECSSSHHHHHTTCCEESE--------------EEEECTTCBEEEEECSSSCTT
T ss_pred cccccchHHHHHHHHHhCCcceee---echhhhhcccccccceee--------------EEEEcCCCeEEEEeeecCCCC
Confidence 357899999999999999999 777789999999999998 99999999999873211
Q ss_pred ----CChhHHHHHHHHHHH
Q 020776 303 ----NDVNSLADGIIKEIK 317 (321)
Q Consensus 303 ----~~~~~l~~~l~~~L~ 317 (321)
.+...+.+.|+.+++
T Consensus 140 ~~~~~~~~~L~~Ai~~ll~ 158 (187)
T d2cvba1 140 DPSKVQSHDLEAAIEALLR 158 (187)
T ss_dssp CGGGCCCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHc
Confidence 222346666666654
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=4.3e-26 Score=186.84 Aligned_cols=134 Identities=22% Similarity=0.341 Sum_probs=118.1
Q ss_pred CCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 156 G~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
|+++| +|+++|.+|+++++++++||++||+||++||++ |..+++.++++++++.++ ++.+|+|++| ++.+.
T Consensus 2 G~~~P--~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~~~~v~i~~~---~~~~~ 72 (137)
T d1st9a_ 2 GSDAP--NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEP-CKKEFPYMANQYKHFKSQ---GVEIVAVNVG---ESKIA 72 (137)
T ss_dssp CEECC--CCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHGGG---TEEEEEEEES---CCHHH
T ss_pred cCcCC--CeEEECCCcCEEeHHHhCCCEEEEEEeeccccc-eeeccccccccccccccc---cccccccccc---chhhh
Confidence 67788 999999999999999999999999999999997 999999999999999876 6888999987 57899
Q ss_pred HHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 236 VREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 236 l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++|+++++++|+++ .|...++++.|++..+|+ +||||++|+|++++.|..+.+.+ +++.++
T Consensus 73 ~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~liD~~G~i~~~~~G~~~~~~~-~~~l~~ 134 (137)
T d1st9a_ 73 VHNFMKSYGVNFPVV---LDTDRQVLDAYDVSPLPT--------------TFLINPEGKVVKVVTGTMTESMI-HDYMNL 134 (137)
T ss_dssp HHHHHHHTTCCSCEE---EETTSHHHHHTTCCSSCE--------------EEEECTTSEEEEEEESCCCHHHH-HHHHHH
T ss_pred HHHHHHHcCCCcccc---ccccchhhhhhhccccce--------------EEEECCCCEEEEEEECCCCHHHH-HHHHHh
Confidence 999999999999988 566678899999988887 99999999999999888876554 334444
Q ss_pred H
Q 020776 316 I 316 (321)
Q Consensus 316 L 316 (321)
|
T Consensus 135 l 135 (137)
T d1st9a_ 135 I 135 (137)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=6e-26 Score=185.65 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=110.9
Q ss_pred CCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 156 G~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
|+.++ +|++++.+|+++++++++||+|||+||++|||+ |..++|.|++++++++ ++.+|+|+.| ++.+.
T Consensus 1 ~d~~~--~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~-C~~~~p~l~~~~~~~~-----~v~~v~v~~~---~~~~~ 69 (134)
T d1lu4a_ 1 ADERL--QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPF-CNAEAPSLSQVAAANP-----AVTFVGIATR---ADVGA 69 (134)
T ss_dssp CGGGG--CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEECS---SCHHH
T ss_pred CCCCC--cceeECCCCCEEcHHHhCCCEEEEEEeecccCC-ceecchhHHHHhhhhc-----cccccccccc---cchhh
Confidence 45666 999999999999999999999999999999997 9999999999988653 4666778875 56789
Q ss_pred HHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe--CCCCChhHHHHHHH
Q 020776 236 VREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF--GKNNDVNSLADGII 313 (321)
Q Consensus 236 l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~--~~~~~~~~l~~~l~ 313 (321)
+++|+++++++|+.+ .|....+++.|++...|+ +||||++|+|++.. .+..+.+++.+.|.
T Consensus 70 ~~~~~~~~~~~~p~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~v~~~~g~~~~~~l~~~l~ 132 (134)
T d1lu4a_ 70 MQSFVSKYNLNFTNL---NDADGVIWARYNVPWQPA--------------FVFYRADGTSTFVNNPTAAMSQDELSGRVA 132 (134)
T ss_dssp HHHHHHHHTCCSEEE---ECTTSHHHHHTTCCSSSE--------------EEEECTTSCEEEECCSSSCCCHHHHHHHHH
T ss_pred hhhhhhhhcccccee---eCchHHHHHHcCCCcCCE--------------EEEEeCCCeEEEEeccCCCCCHHHHHHHHH
Confidence 999999999999998 566678999999998887 99999999998753 44566666666554
Q ss_pred H
Q 020776 314 K 314 (321)
Q Consensus 314 ~ 314 (321)
+
T Consensus 133 ~ 133 (134)
T d1lu4a_ 133 A 133 (134)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.5e-24 Score=178.83 Aligned_cols=164 Identities=46% Similarity=0.945 Sum_probs=137.1
Q ss_pred CCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 156 G~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
|.|+.++||+|+|.+|+++++++|+||++||+||++||++.|..+...+..++..+.+.....+.++.++.++..++.+.
T Consensus 1 g~p~~g~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d2b7ka1 1 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAV 80 (169)
T ss_dssp CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHH
T ss_pred CCCCcCCCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhh
Confidence 44565569999999999999999999999999999999988999999999998888776555677888899988889999
Q ss_pred HHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCC--CCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 236 VREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE--EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 236 l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~--~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
...+....+..+..+++..+........|++....... ....|.+.|++.+||||++|+|+.++.+..+++.+.++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~ 160 (169)
T d2b7ka1 81 LKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIV 160 (169)
T ss_dssp HHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHH
T ss_pred hhhhhccccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999888888999999987765432 3356889999999999999999999988999999999999
Q ss_pred HHHHHH
Q 020776 314 KEIKQY 319 (321)
Q Consensus 314 ~~L~~~ 319 (321)
+.|+++
T Consensus 161 e~ik~l 166 (169)
T d2b7ka1 161 EHVKSY 166 (169)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 999876
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=8.4e-25 Score=180.54 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=117.2
Q ss_pred CCCCCCCCCCeEEEc--CCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC--
Q 020776 154 SVGKAAIGGPFKLIN--HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE-- 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d--~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~-- 229 (321)
.+|+++| +|++.+ .+|+.+++++++||++||+||++||++ |..++|.|++++++++++ +.+|+|+++..
T Consensus 2 k~g~~aP--~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~-C~~~~p~l~~l~~~~~~~----~~~i~v~~~~~~~ 74 (143)
T d2b5xa1 2 KLRQPMP--ELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHL-CKEAMPQVNEFRDKYQDQ----LNVVAVHMPRSED 74 (143)
T ss_dssp CTTCBCC--CCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT----SEEEEEECCCSTT
T ss_pred CCCCcCC--CCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcc-hhhhhhhhhhhhhhhhcc----ccceeEEeecccc
Confidence 5788998 998766 589999999999999999999999998 999999999999999754 56677776543
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
..+.+.+++|+++++++|+++ .|....+++.|++..+|+ +||||++|+|++.+.|..+.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~p~~---~D~~~~~~~~~~v~~~P~--------------~~~id~~G~i~~~~~G~~~~~~l~ 137 (143)
T d2b5xa1 75 DLDPGKIKETAAEHDITQPIF---VDSDHALTDAFENEYVPA--------------YYVFDKTGQLRHFQAGGSGMKMLE 137 (143)
T ss_dssp TSSHHHHHHHHHHTTCCSCEE---ECSSCHHHHHTCCCCSSE--------------EEEECTTCBEEEEEESCSTTHHHH
T ss_pred ccchhhhhhHHHhhccCcccc---ccCccchHHHcCCCcCCE--------------EEEECCCCEEEEEEECCCCHHHHH
Confidence 235788999999999999988 566678899999988887 999999999999988888877777
Q ss_pred HHHHHH
Q 020776 310 DGIIKE 315 (321)
Q Consensus 310 ~~l~~~ 315 (321)
+.|+++
T Consensus 138 ~~l~~l 143 (143)
T d2b5xa1 138 KRVNRV 143 (143)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 666553
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.91 E-value=3.8e-24 Score=182.55 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=104.1
Q ss_pred CCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 020776 160 IGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 160 P~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
+.|+|+++|.+|+.++|++++||+|||+||++||++ |..+++.++++++++.++ ++.+|+|++|. ++++.+++|
T Consensus 35 ~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~-C~~~~~~l~~~~~~~~~~---~~~vv~vs~d~--~~~~~~~~~ 108 (176)
T d1jfua_ 35 KLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVP-CRKEMPALDELQGKLSGP---NFEVVAINIDT--RDPEKPKTF 108 (176)
T ss_dssp BCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHCBT---TEEEEEEECCC--SCTTHHHHH
T ss_pred cCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccc-hHHHHHhhhhcccccccc---ccccccccccc--cchhhhhhh
Confidence 344999999999999999999999999999999998 999999999999999866 67788888874 456899999
Q ss_pred HHHhCCCce-eecCCh-HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh--hHHHHHHHHH
Q 020776 240 VKEFHPKLI-GLTGSP-DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV--NSLADGIIKE 315 (321)
Q Consensus 240 ~~~~~~~~~-~l~~~~-d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~--~~l~~~l~~~ 315 (321)
+++++.++. .+.... .....+...|++...|+ +||||++|+|++++.|..+. +++.+.|+.+
T Consensus 109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~--------------~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al 174 (176)
T d1jfua_ 109 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPT--------------SVLVDPQGCEIATIAGPAEWASEDALKLIRAA 174 (176)
T ss_dssp HHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSE--------------EEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred HhhhCCcceeeeecchhHHHHHHhhhccCCCCCe--------------EEEEcCCCEEEEEEECCCCCChHHHHHHHHHh
Confidence 999998765 442211 12223334445555554 99999999999988775544 3444444443
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=2.6e-24 Score=175.31 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=105.0
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+|+++|.+|+++++++++||++||+||++|||+ |..++|.|.++++++++ +.+|.|+.+ |..+..++|+++
T Consensus 7 df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~-C~~~~p~l~~l~~~~~~-----~~~v~v~~~---d~~~~~~~~~~~ 77 (134)
T d1zzoa1 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPT-CQGEAPVVGQVAASHPE-----VTFVGVAGL---DQVPAMQEFVNK 77 (134)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCTT-----SEEEEEECS---SCHHHHHHHHHH
T ss_pred ceeEEcCCCCEEeHHHhCCCEEEEEecccccCc-ccccchhhHHHHhhhcc-----ccccccccc---ccchhHHHHHHh
Confidence 899999999999999999999999999999998 99999999999998863 344556643 667899999999
Q ss_pred hCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 243 FHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 243 ~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
++.. |+.+ .|...++++.|++...|+ +||||++|+|+++. +..+.+++.+.|++
T Consensus 78 ~~~~~~~~l---~D~~~~~~~~~~v~~~P~--------------~~iiD~~G~i~~~~-g~~~~~~l~~~i~~ 132 (134)
T d1zzoa1 78 YPVKTFTQL---ADTDGSVWANFGVTQQPA--------------YAFVDPHGNVDVVR-GRMSQDELTRRVTA 132 (134)
T ss_dssp TTCTTSEEE---ECTTCHHHHHTTCCSSSE--------------EEEECTTCCEEEEE-SCCCHHHHHHHHHH
T ss_pred cCCcceeEE---eeccchHHHhcCCCccCe--------------EEEECCCCeEEEEE-CCCCHHHHHHHHHh
Confidence 9875 7777 556668999999998887 99999999997754 67777666655554
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=6.1e-24 Score=180.42 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=122.2
Q ss_pred CCCCCCCCCCCCeEEEcCCC---------------CeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhc
Q 020776 152 GPSVGKAAIGGPFKLINHDG---------------KNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENS 215 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G---------------~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~ 215 (321)
...||+++| +|++++.+| +.++|++++||++||+|| ++|||. |..+++.+++.+++|++.
T Consensus 2 ~l~vGd~aP--dF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~-C~~~~~~~~~~~~~~~~~- 77 (169)
T d2bmxa1 2 LLTIGDQFP--AYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFV-CPTEIAAFSKLNDEFEDR- 77 (169)
T ss_dssp BCCTTCBCC--CCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCC-CHHHHHHHHHTHHHHHTT-
T ss_pred CCCCCCCCC--CCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCcc-cccccccccccccccccc-
Confidence 467999999 999998888 688999999999999999 999997 999999999999999977
Q ss_pred CCcEEEEEEeeCCCCCCHHHHHHHHHHhC----CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC
Q 020776 216 GIDIVPAFISVDPERDTVEQVREYVKEFH----PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP 291 (321)
Q Consensus 216 g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~----~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~ 291 (321)
++++|+|+.| +++...+|.+.++ ++|+++ .|...+++++||+.... ....+++||||+
T Consensus 78 --g~~vv~is~d----~~~~~~~~~~~~~~~~~~~f~ll---~D~~~~v~~~ygv~~~~---------~~~~r~~fvID~ 139 (169)
T d2bmxa1 78 --DAQILGVSID----SEFAHFQWRAQHNDLKTLPFPML---SDIKRELSQAAGVLNAD---------GVADRVTFIVDP 139 (169)
T ss_dssp --TEEEEEEESS----CHHHHHHHHHHCTTGGGCCSCEE---ECTTSHHHHHHTCBCTT---------SSBCEEEEEECT
T ss_pred --Ccceeecccc----chhhhhhhcccccccccceEEEE---eccHHHHHHHcCCCccC---------CccceeEEEEcC
Confidence 6888999975 4677778887775 788998 77888999999985311 134577999999
Q ss_pred CCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 292 KMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 292 dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
+|+|++.+......+...+++++.|+++|
T Consensus 140 ~G~I~~~~~~~~~~~~~~~evl~~l~alq 168 (169)
T d2bmxa1 140 NNEIQFVSATAGSVGRNVDEVLRVLDALQ 168 (169)
T ss_dssp TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 99999876555444455678888888876
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.90 E-value=2.4e-24 Score=180.52 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeecccc--CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDF--LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~--kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.+||+++| +|+|+|.+|+.++|+++ +||++||+|| ++|||. |..+++.|+++++++++. .+.+|+|+.
T Consensus 2 i~vG~~aP--dF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vv~is~--- 72 (160)
T d2cx4a1 2 VELGEKAP--DFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPV-CTKELCTFRDKMAQLEKA---NAEVLAISV--- 72 (160)
T ss_dssp CCTTSBCC--CCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHH-HHHHHHHHHHTCTTTSTT---CCEEEEEES---
T ss_pred CcCCCCCc--CeEeECCCCCEEehHHHhhCCCEEEEEecccccCCc-hhhhhhhhhccccccccc---ccccccccc---
Confidence 46899999 99999999999999998 7999999998 899997 999999999999999876 567788885
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC-----CCC
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK-----NND 304 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~-----~~~ 304 (321)
|+++.+++|.++++++|+++ .|....++++||+...... .+...+.|++||||++|+|++.+.+ ..+
T Consensus 73 -d~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~----~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~ 144 (160)
T d2cx4a1 73 -DSPWCLKKFKDENRLAFNLL---SDYNREVIKLYNVYHEDLK----GLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPD 144 (160)
T ss_dssp -SCHHHHHHHHHHHTCSSEEE---ECTTSHHHHHTTCEEEEET----TEEEEECCEEEEECTTSBEEEEEECSSTTCCCC
T ss_pred -cchhhhhhhcccceeeEEEe---ecCCcchHHHcCccccccc----cccccceeeEEEEcCCCEEEEEEEeCCCCCCCC
Confidence 46799999999999999998 6667889999999875431 2334466789999999999987532 224
Q ss_pred hhHHHHHHHHHHHH
Q 020776 305 VNSLADGIIKEIKQ 318 (321)
Q Consensus 305 ~~~l~~~l~~~L~~ 318 (321)
.+++.+++++++.+
T Consensus 145 ~~eil~~l~~l~~e 158 (160)
T d2cx4a1 145 YDEVVREANKIAGE 158 (160)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccc
Confidence 45555666555544
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=99.90 E-value=2.3e-24 Score=183.09 Aligned_cols=128 Identities=21% Similarity=0.269 Sum_probs=106.3
Q ss_pred CCCCCCCCCCeEEEc----CCCCeeeccccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 154 SVGKAAIGGPFKLIN----HDGKNVTEKDFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d----~~G~~vsLsd~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.||+++| +|++++ .++++++|++++||++||+||.. |||. |..|++.|++.+++|++. ++++|+||.|
T Consensus 2 lvG~~aP--~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~-C~~e~~~~~~~~~~f~~~---g~~vv~IS~D- 74 (166)
T d1we0a1 2 LIGTEVQ--PFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFV-CPTELEDVQKEYAELKKL---GVEVYSVSTD- 74 (166)
T ss_dssp CTTCBCC--CCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSS-CTHHHHHHHHHHHHHHHT---TEEEEEEESS-
T ss_pred CCCCcCC--CCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcH-HHHHHHHHHHHHHhhccc---ceEEEecccc-
Confidence 5899999 999996 44567999999999999999976 9997 999999999999999987 7899999975
Q ss_pred CCCCHHHHHHHHHH----hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 229 ERDTVEQVREYVKE----FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~----~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+++..++|+++ ++++|+.+ .|..++++++||+..... ....+.+||||++|+|++.+...
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~fpll---~D~~~~v~~~ygv~~~~~--------~~~~r~tfvID~~G~I~~~~i~~ 138 (166)
T d1we0a1 75 ---THFVHKAWHENSPAVGSIEYIMI---GDPSQTISRQFDVLNEET--------GLADRGTFIIDPDGVIQAIEINA 138 (166)
T ss_dssp ---CHHHHHHHHHSCHHHHTCCSEEE---ECTTCHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEEEEEC
T ss_pred ---cHHHHHHHhhhhhhhcccccccc---cCcccHHHHHhCCCcccc--------CcccceEEEECCCCcEEEEEEcC
Confidence 45666777665 47899999 778889999999975432 12457799999999999875443
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.90 E-value=1.1e-23 Score=175.66 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=116.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCC-eEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGK-WTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK-~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
..||+++| +|+++|.+|++++|++++|| ++|| +||++|||. |..+++.|++++++++++ ++.+++|+.
T Consensus 2 l~vG~~aP--dF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~-C~~e~~~l~~~~~~~~~~---~~~vi~vs~---- 71 (153)
T d1xvwa1 2 LNVGATAP--DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGI-CQGELDQLRDHLPEFEND---DSAALAISV---- 71 (153)
T ss_dssp CCTTSBCC--CCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSH-HHHHHHHHHHTGGGTSSS---SEEEEEEES----
T ss_pred CCCcCCCc--CeEEECCCCCEEeHHHHcCCCcEEEEecccccccc-hhhhhhhhhhhhhhhccc---ccccccccc----
Confidence 46899999 99999999999999999995 4544 556999997 999999999999999765 788899985
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
|+++.+++|+++++++|+.+.. .+....+++.||+...+.. ...+++||||++|+|++.+...........
T Consensus 72 d~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ygv~~~~~g--------~~~r~tfvID~~G~I~~~~~~~~~~~~~~~ 142 (153)
T d1xvwa1 72 GPPPTHKIWATQSGFTFPLLSD-FWPHGAVSQAYGVFNEQAG--------IANRGTFVVDRSGIIRFAEMKQPGEVRDQR 142 (153)
T ss_dssp CCHHHHHHHHHHHTCCSCEEEC-TTTTTHHHHHTTCEETTTT--------EECSEEEEECTTSBEEEEEECCTTCCCCHH
T ss_pred hhhhHHHHHhhhhccceeEEec-ccccchhHHHhhhhhhccC--------ceeeeEEEECCCCEEEEEEEeCCCcccCHH
Confidence 5689999999999999987743 3445778999998654321 233579999999999987644333233355
Q ss_pred HHHHHHHHHh
Q 020776 311 GIIKEIKQYK 320 (321)
Q Consensus 311 ~l~~~L~~~k 320 (321)
+++++|++++
T Consensus 143 ~~~~~L~aL~ 152 (153)
T d1xvwa1 143 LWTDALAALT 152 (153)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 6777777664
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=99.89 E-value=1.1e-23 Score=178.55 Aligned_cols=147 Identities=17% Similarity=0.251 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCeE----EEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 153 PSVGKAAIGGPFK----LINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 153 ~~vG~~aP~p~f~----l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
..||++|| +|+ |.|.+|++++|+|++||+|||+|| ++||+. |..+++.|++.+++|++. ++.+++||.|
T Consensus 3 ~kvG~~AP--dF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~-C~~e~~~l~~~~~~~~~~---~~~v~~is~d 76 (167)
T d1e2ya_ 3 AKLNHPAP--EFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFV-CPTEIIQFSDDAKRFAEI---NTEVISCSCD 76 (167)
T ss_dssp CCTTSBCC--CCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSS-CCHHHHHHHHTHHHHHTT---TEEEEEEESS
T ss_pred ccCCCCCC--CCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccc-cchhhHHHHHHHHHhhcC---ceEEEeecCC
Confidence 57999999 999 567899999999999999999999 999997 999999999999999976 6888999965
Q ss_pred CCCCCHHHHHHHHHHhC-------CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVKEFH-------PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~-------~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+.+...+|..... .+++.+ .|....+++.|++..... ....+++||||++|+|++.+.
T Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~l---~d~~~~~~~~y~v~~~~~--------g~~~r~tfvID~~G~Ir~~~~ 141 (167)
T d1e2ya_ 77 ----SEYSHLQWTSVDRKKGGLGPMAIPML---ADKTKAIARAYGVLDEDS--------GVAYRGVFIIDPNGKLRQIII 141 (167)
T ss_dssp ----CHHHHHHHHHSCGGGTCCCCCSSCEE---ECTTCHHHHHHTCEETTT--------TEECEEEEEECTTSBEEEEEE
T ss_pred ----cHHhHHHHHhhHHHhccccccccccc---ccchhHHHHHcCCCcccC--------CCceeEEEEECCCCEEEEEEE
Confidence 4677777776542 466666 677888999999854221 124467999999999998864
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q 020776 301 KNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 301 ~~~~~~~l~~~l~~~L~~~k 320 (321)
.........+++++.|++++
T Consensus 142 ~~~~~~~~~~evL~~l~alq 161 (167)
T d1e2ya_ 142 NDMPIGRNVEEVIRLVEALQ 161 (167)
T ss_dssp ECTTBCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHh
Confidence 44433334556666665554
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.89 E-value=1.3e-23 Score=173.30 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=109.0
Q ss_pred CeEEEcCCC--------CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 163 PFKLINHDG--------KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 163 ~f~l~d~~G--------~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+|++++.+| ..+++++++||+|||+||++||++ |+.++|.++++++++ ++.+++|+.+ ++..
T Consensus 5 ~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~-C~~~~p~l~~l~~~~------~~~~~~i~~~---~~~~ 74 (144)
T d1knga_ 5 QTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVP-CHDEAPLLTELGKDK------RFQLVGINYK---DAAD 74 (144)
T ss_dssp CCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHH-HHHHHHHHHHHTTCT------TSEEEEEEES---CCHH
T ss_pred CCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeecccccc-ccccCchhhhhhhcc------CceeEEEEee---echH
Confidence 777766665 678899999999999999999998 999999999886554 3455666765 4567
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..++|.++++..++.+. .|...++++.|++..+|+ ++|||++|+|++.+.|..+.+++.+.|++
T Consensus 75 ~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~v~~~P~--------------~~liD~~G~i~~~~~G~~~~~~l~~~i~~ 138 (144)
T d1knga_ 75 NARRFLGRYGNPFGRVG--VDANGRASIEWGVYGVPE--------------TFVVGREGTIVYKLVGPITPDNLRSVLLP 138 (144)
T ss_dssp HHHHHHHHHCCCCSEEE--EETTSHHHHHTTCCSSCE--------------EEEECTTSBEEEEEESCCCHHHHHHTHHH
T ss_pred HHHHHHHHcCCcccccc--ccccchhhhhcCccccce--------------EEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 88999999998876442 455677999999998887 99999999999999899999999999998
Q ss_pred HHHHH
Q 020776 315 EIKQY 319 (321)
Q Consensus 315 ~L~~~ 319 (321)
+|++.
T Consensus 139 ~l~ka 143 (144)
T d1knga_ 139 QMEKA 143 (144)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.88 E-value=1.8e-24 Score=178.02 Aligned_cols=132 Identities=16% Similarity=0.074 Sum_probs=106.2
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC---CCCHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE---RDTVEQVREY 239 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~---~Dt~e~l~~~ 239 (321)
..+|++.+|+++++++++||++||+||++||++ |+.++|.|++++++++.. ++.+++|+.+.. .+..+..+.+
T Consensus 5 ~~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~-C~~~~~~l~~l~~~~~~~---~~~~i~v~~~~~~~~~~~~~~~~~~ 80 (143)
T d2fy6a1 5 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPL-CLSELGQTEKWAQDAKFS---SANLITVASPGFLHEKKDGDFQKWY 80 (143)
T ss_dssp HHTCEETTSCBGGGGCCTTSCEEEEEECTTCHH-HHTTHHHHHHHHHCGGGT---TSEEEEEECTTSTTCCCTTHHHHHH
T ss_pred cceeECCCCCEeeHHHhCCCEEEEEEECCCCcc-ccccCcchhhhhhhhccC---CcEEEEEeeeecccccchhhhhhhh
Confidence 457899999999999999999999999999998 999999999999999876 566677776522 2333334444
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
.+.....|+++ .|....+++.|++...|+ +||||++|+|++++.|.++.+++.+.|++.
T Consensus 81 ~~~~~~~~~~~---~D~~~~~~~~~~v~~~P~--------------~~liD~~G~i~~~~~G~~~~~~~~~~l~~~ 139 (143)
T d2fy6a1 81 AGLNYPKLPVV---TDNGGTIAQSLNISVYPS--------------WALIGKDGDVQRIVKGSINEAQALALIRDP 139 (143)
T ss_dssp TTSCCTTSCEE---ECTTCHHHHHTTCCSSSE--------------EEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred hhcCCcccccc---cccchHHHHHcCCCccCE--------------EEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence 44445678888 566778999999998887 999999999999998999877666655543
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=7.5e-23 Score=171.69 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeecccc--CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDF--LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~--kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
...||+++| +|+|+|.+|+.++|+++ +|++||++|| ++|||. |..+++.+++.+++|++. +.+++||.
T Consensus 4 ~L~vG~~aP--~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~-C~~~~~~~~~~~~~~~~~----~~~~~is~-- 74 (156)
T d2a4va1 4 ELEIGDPIP--DLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPG-STRQASGFRDNYQELKEY----AAVFGLSA-- 74 (156)
T ss_dssp CCCTTCBCC--SCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHH-HHHHHHHHHHHHHHHTTT----CEEEEEES--
T ss_pred cCCCCCCCC--CeEEECCCCCEEeeHHHcCCccEEEEEecccccCcc-hhhhhHHHHHHHHHHhhc----cceeeecc--
Confidence 567999999 99999999999999998 5678888888 899997 999999999999999753 45678885
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC---Ch
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN---DV 305 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~---~~ 305 (321)
|+++.+++|+++++++|+++ .|...+++++||+...|.. ..+.+++|+.||+|++++.+.. ..
T Consensus 75 --d~~~~~~~f~~~~~l~f~~L---~D~~~~v~~~ygv~~~~~~---------~~~r~~~i~~dg~i~~~~~~~~~~~~~ 140 (156)
T d2a4va1 75 --DSVTSQKKFQSKQNLPYHLL---SDPKREFIGLLGAKKTPLS---------GSIRSHFIFVDGKLKFKRVKISPEVSV 140 (156)
T ss_dssp --CCHHHHHHHHHHHTCSSEEE---ECTTCHHHHHHTCBSSSSS---------CBCCEEEEEETTEEEEEEESCCHHHHH
T ss_pred --chhhhHHhhhcccCccceec---cchHHHHHHHcCCCccccC---------CeeEEEEEEECCeEEEEEEEeCCCCCc
Confidence 56899999999999999999 7888999999999765531 1112445557999999875443 34
Q ss_pred hHHHHHHHHHHHHHhC
Q 020776 306 NSLADGIIKEIKQYKR 321 (321)
Q Consensus 306 ~~l~~~l~~~L~~~kk 321 (321)
+...+++.+.|++++|
T Consensus 141 ~~~~~evl~~lk~l~~ 156 (156)
T d2a4va1 141 NDAKKEVLEVAEKFKE 156 (156)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHhcC
Confidence 4556778888888875
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.9e-23 Score=169.62 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=105.5
Q ss_pred EcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 167 INHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 167 ~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
.|.+|+.++.+++ +||+|||+||+|||++ |+.++|.|+++++ + ++.+++++.| ++......+..+.+.
T Consensus 5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~p-C~~e~p~l~~~~~----~---~~~vi~i~~~---~~~~~~~~~~~~~~~ 73 (136)
T d1z5ye1 5 LDNPGQFYQADVLTQGKPVLLNVWATWCPT-SRAEHQYLNQLSA----Q---GIRVVGMNYK---DDRQKAISWLKELGN 73 (136)
T ss_dssp SSSTTCEECHHHHHSSSCEEEEEECTTCHH-HHHHHHHHHHHHH----T---TCCEEEEEES---CCHHHHHHHHHHHCC
T ss_pred ccCCCcEecHHHHcCCCEEEEEEEcCcCCC-cCccccchhhhhh----h---hhhhcccccc---cchhhhHHHHHHcCC
Confidence 4566999999998 8999999999999998 9999999988743 2 3556677765 446788888888886
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+..+. .|....+++.|++..+|+ +||||++|+|++++.|..+.+++.+.|.++|++++
T Consensus 74 ~~~~~~--~d~~~~~~~~~~v~~~P~--------------~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~ 132 (136)
T d1z5ye1 74 PYALSL--FDGDGMLGLDLGVYGAPE--------------TFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 132 (136)
T ss_dssp CCSEEE--EESSCHHHHHHTCCSBSE--------------EEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred ccceee--cccchhHHHhcccCCcce--------------EEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 654332 455667899999999887 99999999999999899999999999999998875
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.88 E-value=2.1e-22 Score=169.44 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=117.5
Q ss_pred CCCCCCeEEE---cCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 158 AAIGGPFKLI---NHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 158 ~aP~p~f~l~---d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
.|| +|+++ +.+|++++|+|++||+|||+|| +.|||. |..|++.+++.+++|.+. ++.+++||. |++
T Consensus 2 ~AP--~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~-C~~e~~~~~~~~~~~~~~---~~~vigIS~----d~~ 71 (158)
T d1zyea1 2 HAP--YFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFV-CPTEIIAFSDKASEFHDV---NCEVVAVSV----DSH 71 (158)
T ss_dssp BCC--CCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSS-SHHHHHHHHHHHHHHHHT---TEEEEEEES----SCH
T ss_pred CCC--CCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCc-cccchhhHHHhHHHhhcC---CceEEeccC----cCH
Confidence 456 99987 4577899999999999999999 889996 999999999999999977 788899996 457
Q ss_pred HHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 234 EQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 234 e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
...++|++.. +.+|+.+ .|....+++.||+...+.. ...+++||||++|+|++.+....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~f~ll---sD~~~~~~~~ygv~~~~~g--------~~~R~tfvID~~G~I~~~~i~~~~~~ 140 (158)
T d1zyea1 72 FSHLAWINTPRKNGGLGHMNIALL---SDLTKQISRDYGVLLEGPG--------LALRGLFIIDPNGVIKHLSVNDLPVG 140 (158)
T ss_dssp HHHHHHHTSCGGGTCCCSCSSEEE---ECTTSHHHHHTTCEETTTT--------EECEEEEEECTTSBEEEEEEECTTCC
T ss_pred HHHHHHHhhhHhhccccccccccc---cccccHHHHHHHhccccCC--------ccccEEEEECCCCEEEEEEEeCCCCC
Confidence 8999999875 6789999 7788889999999864431 24578999999999998865555555
Q ss_pred HHHHHHHHHHHHHh
Q 020776 307 SLADGIIKEIKQYK 320 (321)
Q Consensus 307 ~l~~~l~~~L~~~k 320 (321)
...+++.+.|++++
T Consensus 141 ~~~~EiL~~lkalq 154 (158)
T d1zyea1 141 RSVEETLRLVKAFQ 154 (158)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh
Confidence 56777788887765
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.88 E-value=7.6e-23 Score=177.84 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=121.2
Q ss_pred CCCCCCCCCCeEE----EcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 154 SVGKAAIGGPFKL----INHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 154 ~vG~~aP~p~f~l----~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
..|.||| +|++ .|.+|++++|+|++||+|||+|| +.||+. |..|++.+++++++|++. ++++|+||.|
T Consensus 4 e~~~PAP--dFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~-C~~E~~~f~~~~~~f~~~---g~~VlgIS~D- 76 (194)
T d1uula_ 4 EDLHPAP--DFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFV-CPTEICQFSDRVKEFSDI---GCEVLACSMD- 76 (194)
T ss_dssp CTTSBCC--CCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSH-HHHHHHHHHHTHHHHHTT---TEEEEEEESS-
T ss_pred ccCCCCC--CCcccccccCCCCcEEehHHhCCCeEEEEEEeCCcccc-chhhhhHHHhhhhhhccC---ceEEEEEecC-
Confidence 3456777 9994 47789999999999999999999 999996 999999999999999876 7899999965
Q ss_pred CCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 229 ERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.+..++|.+.+ +++|+++ .|..++++++||+..... ....+.+||||++|+|++.+..
T Consensus 77 ---s~~s~~~~~~~~~~~~~~~~l~fpll---sD~~~~v~~~ygv~~~~~--------~~~~R~tfvID~~G~I~~~~~~ 142 (194)
T d1uula_ 77 ---SEYSHLAWTSIERKRGGLGQMNIPIL---ADKTKCIMKSYGVLKEED--------GVAYRGLFIIDPKQNLRQITVN 142 (194)
T ss_dssp ---CHHHHHHHHHSCGGGTCCCSCSSCEE---ECTTCHHHHHHTCEETTT--------TEECEEEEEECTTSBEEEEEEE
T ss_pred ---chhhhhhhhhhhhhhccccCCCccee---eCCcchHHHHcCCeeccC--------CceEEEEEEECCCCeEEEEEEe
Confidence 568888888765 4788888 888899999999964322 1234779999999999999777
Q ss_pred CCChhHHHHHHHHHHHHHh
Q 020776 302 NNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~~~k 320 (321)
..+.....+++.+.+++++
T Consensus 143 ~~~~~r~~~E~Lr~l~alQ 161 (194)
T d1uula_ 143 DLPVGRDVDEALRLVKAFQ 161 (194)
T ss_dssp CTTBCCCHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHhh
Confidence 7777777888888887765
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=99.87 E-value=1.9e-22 Score=171.69 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=118.3
Q ss_pred CCCCCCCCCCeEEEcCCC-----CeeeccccCCC-eEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 154 SVGKAAIGGPFKLINHDG-----KNVTEKDFLGK-WTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G-----~~vsLsd~kGK-~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.||++|| +|++++.+| +.++|++++|| +|||+|| +.|||. |..|++.+++.++++++. ++++|+||.
T Consensus 2 lVG~~AP--dF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~-C~~e~~~~~~~~~~f~~~---g~~Vvgis~ 75 (170)
T d1zofa1 2 VVTKLAP--DFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFV-CPTEIIAFDKRVKDFHEK---GFNVIGVSI 75 (170)
T ss_dssp CTTSBCC--CCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSS-CCTHHHHHHHTHHHHHHT---TEEEEEEES
T ss_pred CCCCcCC--CcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCc-CHHHHHHHHHhHHhhccC---CeeEecccc
Confidence 5899999 999999888 47999999985 8999999 999996 999999999999999877 788999996
Q ss_pred CCCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
| +.+..++|++++ +.+|+.+ .|...++.++||+.... ....+++||||++|+|++.+
T Consensus 76 d----~~~~~~~~~~~~~~~~~~~~~~~~~l---~D~~~~v~~~ygv~~~~---------~~~~r~tfvID~~G~I~~~~ 139 (170)
T d1zofa1 76 D----SEQVHFAWKNTPVEKGGIGQVSFPMV---ADITKSISRDYDVLFEE---------AIALRGAFLIDKNMKVRHAV 139 (170)
T ss_dssp S----CHHHHHHHHTSCGGGTCCCCCSSCEE---ECTTSHHHHHTTCEETT---------TEECEEEEEEETTTEEEEEE
T ss_pred c----chhhHHHHHhhhhhcccccCcccccc---cccccHHHHHcCCCccc---------cceeEEEEEEcCCCeEEEEE
Confidence 4 568888888775 5678888 77788999999996421 12457799999999999876
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 020776 300 GKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 300 ~~~~~~~~l~~~l~~~L~~~k 320 (321)
..........+++++.|++++
T Consensus 140 ~~~~~~~~~~~eiL~~l~aLq 160 (170)
T d1zofa1 140 INDLPLGRNADEMLRMVDALL 160 (170)
T ss_dssp EESSSCCCHHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHhh
Confidence 454544455677777777664
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.87 E-value=1.3e-22 Score=167.67 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=100.3
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+|..+| +|+..+.+|.+++|++++||+|||+||++||++ |+.++|.|++++++|.++ .++.+|+|+.| ++.+
T Consensus 4 ~~k~~P--~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~-C~~~~p~l~~l~~~~~~~--~~~~vi~is~d---~~~~ 75 (144)
T d1o73a_ 4 LAKYLP--GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP-CRGFTPVLAEFYEKHHVA--KNFEVVLISWD---ENES 75 (144)
T ss_dssp GGGTSC--TTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECC---SSHH
T ss_pred cccCCC--CceeeccCCCEEeHHHhCCCEEEEEeChhhCcc-chhhhHHHHHHHHHHhhc--cCeEEEEEecc---hhHH
Confidence 456777 999999999999999999999999999999998 999999999999999654 36899999987 4567
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEe
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFF 299 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~ 299 (321)
.+++|.++.+. +.......+....+++.|++..+|+ +||||++ |+|+...
T Consensus 76 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~y~v~~~Pt--------------~~lID~~~G~Ii~~~ 126 (144)
T d1o73a_ 76 DFHDYYGKMPW-LALPFDQRSTVSELGKTFGVESIPT--------------LITINADTGAIIGTQ 126 (144)
T ss_dssp HHHHHHTTCSS-EECCTTCHHHHHHHHHHHTCCSSSE--------------EEEEETTTCCEEESC
T ss_pred HHHHHHHhccc-cceeeeccchHHHHHHHcCCCcCCE--------------EEEEECCCCEEEeec
Confidence 88888877642 2222223455667899999999887 9999998 9998753
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.6e-21 Score=169.75 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=123.0
Q ss_pred CCCCCCCCCCCCeEEE---cCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 152 GPSVGKAAIGGPFKLI---NHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~---d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
...||++|| +|+++ |.+|+.++|+|++||++||+|| ..||+. |..|+..|++.+++|++. ++.+++||.|
T Consensus 4 ~~~VG~~AP--~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~-C~~e~~~~~~~~~~f~~~---g~~vigIS~D 77 (197)
T d1qmva_ 4 NARIGKPAP--DFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFV-CPTEIIAFSNRAEDFRKL---GCEVLGVSVD 77 (197)
T ss_dssp TBCTTSBCC--CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSH-HHHHHHHHHHTHHHHHTT---TEEEEEEESS
T ss_pred CCcCCCcCC--CCCCcceeCCCCcEEeHHHhCCCeEEEEEeccccccc-chhhhHHHHHHHHHhccC---CcEEEEEecC
Confidence 457999999 99885 6678899999999999999999 889995 999999999999999976 7999999965
Q ss_pred CCCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++..++|.+.. +++|+.+ .|..++++++||+..... -...+.+||||++|+|++.+.
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~~fpll---~D~~~~va~~ygv~~~~~--------g~~~R~tfiID~~g~Ir~~~~ 142 (197)
T d1qmva_ 78 ----SQFTHLAWINTPRKEGGLGPLNIPLL---ADVTRRLSEDYGVLKTDE--------GIAYRGLFIIDGKGVLRQITV 142 (197)
T ss_dssp ----CHHHHHHHHTSCGGGTCCCSCSSCEE---ECTTCHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEEEE
T ss_pred ----CHHHHHhhhcchhhhcCcCCCccceE---eccchHHHHHhCCCcccC--------CeeeEEEEEECCCCcEEEEEe
Confidence 568888888764 5789999 788899999999875332 124578999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q 020776 301 KNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 301 ~~~~~~~l~~~l~~~L~~~k 320 (321)
...+.....+++.+.|++++
T Consensus 143 ~~~~~~r~~~E~lr~l~alq 162 (197)
T d1qmva_ 143 NDLPVGRSVDEALRLVQAFQ 162 (197)
T ss_dssp ECTTBCCCHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHhhc
Confidence 66666666777777776664
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.85 E-value=1.9e-21 Score=160.90 Aligned_cols=115 Identities=13% Similarity=0.224 Sum_probs=96.4
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
.+.+.+.+|..|++++++||+|||+|||+||++ |+.++|.|++++++++++ .++++|+|+.| ++.+.+++|.++
T Consensus 10 ~~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~p-C~~~~p~L~~l~~~~~~~--~~~~vi~vs~D---~~~~~~~~~~~~ 83 (144)
T d1i5ga_ 10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPP-SRAFTPQLIDFYKAHAEK--KNFEVMLISWD---ESAEDFKDYYAK 83 (144)
T ss_dssp CSEEEETTEEEEEGGGGTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECC---SSHHHHHHHHTT
T ss_pred chhhccCCCCEeeHHHcCCCEEEEEEEecCCch-HhhhhHhHHHHHHHHHhc--cCcEEEEEecc---ccHHHHHHHHHh
Confidence 567788889999999999999999999999998 999999999999999865 36889999988 457889999998
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEE
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKF 298 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~ 298 (321)
++..+..+ .+.+....+++.|+|..+|+ ++|||++ |+|+..
T Consensus 84 ~~~~~~~~-~d~~~~~~l~~~y~v~~iPt--------------~~lid~~~G~vi~~ 125 (144)
T d1i5ga_ 84 MPWLALPF-EDRKGMEFLTTGFDVKSIPT--------------LVGVEADSGNIITT 125 (144)
T ss_dssp CSSEECCT-TCHHHHHHHHHHTTCCSSSE--------------EEEEETTTCCEEES
T ss_pred CCCCceee-EChHHHHHHHHHCCCCCcCE--------------EEEEeCCCCEEEee
Confidence 87554433 23334456889999999998 9999997 899764
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=3.8e-21 Score=165.89 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=117.6
Q ss_pred CCCCCCCCCCeEEEc-CCC--CeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLIN-HDG--KNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d-~~G--~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.||+++| +|++++ .+| ++++|++++||++||+|| ..||| +|..|++.+++.+++|++. ++++++||.
T Consensus 2 lIg~~aP--~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp-~C~~e~~~f~~~~~~f~~~---~~~v~gIS~--- 72 (186)
T d1n8ja_ 2 LINTKIK--PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTF-VSPTELGDVADHYEELQKL---GVDVYSVST--- 72 (186)
T ss_dssp CTTCBCC--CCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCS-HHHHHHHHHHHHHHHHHHT---TEEEEEEES---
T ss_pred CCCCcCC--CCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCC-ccHHHHHHHHHhhhhcccc---cEEEEeccc---
Confidence 4889999 999876 345 478999999999999999 55566 5999999999999999876 788999996
Q ss_pred CCCHHHHHHHHHHhC----CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 230 RDTVEQVREYVKEFH----PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~----~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
|+++..++|+++++ ++|+.+ .|..++++++||+..... -...+.+||||++|+|++.+......
T Consensus 73 -Ds~~sh~~f~~~~~~~~~~~fpll---sD~~~~v~~~yGv~~~~~--------g~~~r~tfiID~~G~Ir~~~v~~~~~ 140 (186)
T d1n8ja_ 73 -DTHFTHKAWHSSSETIAKIKYAMI---GDPTGALTRNFDNMREDE--------GLADRATFVVDPQGIIQAIEVTAEGI 140 (186)
T ss_dssp -SCHHHHHHHHHHCTTGGGCCSEEE---ECTTSHHHHHTTCEETTT--------TEECEEEEEECTTSBEEEEEEECTTB
T ss_pred -cCHHHHHHHhcccccccccccccc---ccHHHHHHHHhCCCcccC--------CcceeeEEEECchheEEEEeecCCCc
Confidence 56799999999875 889999 788899999999975322 12347799999999999887555555
Q ss_pred hHHHHHHHHHHHHHh
Q 020776 306 NSLADGIIKEIKQYK 320 (321)
Q Consensus 306 ~~l~~~l~~~L~~~k 320 (321)
....+++++.|++++
T Consensus 141 ~r~~~eiL~~lkaLQ 155 (186)
T d1n8ja_ 141 GRDASDLLRKIKAAQ 155 (186)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 555666666666554
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.7e-21 Score=163.33 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=107.3
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
...+++|++|| +|+|+|.+|+.++|++++||++||+|| +.|||. |..+++.|++++.+++ ++.+++||.
T Consensus 15 g~~~~vG~~AP--dF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~-C~~~~~~l~~~~~~~~-----~~~vv~Is~-- 84 (164)
T d1qxha_ 15 NSIPQAGSKAQ--TFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGV-CAASVRKFNQLATEID-----NTVVLCISA-- 84 (164)
T ss_dssp SCCCCTTSBCC--CCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSC-CCHHHHHHHHHHHTST-----TEEEEEEES--
T ss_pred CCcCCCCCCCC--CeEEECCCCCEEeHHHhCCCeEEEEEecchhccc-chHHHHHHHHHHHhhc-----cceeeeEEc--
Confidence 34689999999 999999999999999999999999988 669997 9999999999887653 578889996
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|+++..++|.++++.+++.+.. .|...+++++||+.....+ .+. .+.+++||||++|+|++..
T Consensus 85 --d~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~ygv~~~~~~----~~g-~~~ra~fvID~~G~I~y~~ 147 (164)
T d1qxha_ 85 --DLPFAQSRFCGAEGLNNVITLS-TFRNAEFLQAYGVAIADGP----LKG-LAARAVVVIDENDNVIFSQ 147 (164)
T ss_dssp --SCHHHHTTCCSSTTCTTEEEEE-CTTCHHHHHHTTCBBCSST----TTT-SBCCEEEEECTTSBEEEEE
T ss_pred --CCHHHHHHHHHHhCCCcceeec-cccchhhHHhcCeEeecCc----ccC-cccCEEEEEcCCCEEEEEE
Confidence 4678999999999988876632 3556889999998653211 111 2457899999999999874
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=99.84 E-value=3.5e-21 Score=158.22 Aligned_cols=120 Identities=16% Similarity=0.246 Sum_probs=97.7
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+|..+| +|++.+.+|+++++++++||+|||+||++||++ |..+++.|.+++++|.++ .++.+|+|+.| ++.+
T Consensus 2 ~~k~~P--~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~-C~~~~~~l~~l~~~~~~~--~~~~~v~is~d---~~~~ 73 (144)
T d1o8xa_ 2 LDKYLP--GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP-ARGFTPQLIEFYDKFHES--KNFEVVFCTWD---EEED 73 (144)
T ss_dssp GGGTST--TCCEEEETTEEEEGGGGTTCEEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEECC---CSHH
T ss_pred CCCCCC--CcEeEcCCCCEEeHHHhCCCEEEEEeccccccc-cccccchhHHhhhhcccc--ccccccccccc---ccHH
Confidence 345666 999999999999999999999999999999998 999999999999999765 36888899987 3456
Q ss_pred HHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEE
Q 020776 235 QVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKF 298 (321)
Q Consensus 235 ~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~ 298 (321)
.+..+...... .+++. ..+...++++.|+|..+|+ +||||++ |+|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~--~~d~~~~l~~~y~v~~~Pt--------------~~liD~~~G~Vi~~ 123 (144)
T d1o8xa_ 74 GFAGYFAKMPWLAVPFA--QSEAVQKLSKHFNVESIPT--------------LIGVDADSGDVVTT 123 (144)
T ss_dssp HHHHHHTTCSSEECCGG--GHHHHHHHHHHTTCCSSSE--------------EEEEETTTCCEEES
T ss_pred HHHHHHhhccccceeee--cccchhhHHHHcCCCcCCE--------------EEEEeCCCCEEEEE
Confidence 66666655432 22222 2456678999999999988 9999998 898765
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.83 E-value=6.3e-21 Score=160.84 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
..+.+|+++| +|+|.+.+|++++|++++||++||.|| +.|||. |..+++.|++.+.+++ ++.+++|+.
T Consensus 14 ~~l~vG~~aP--dF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~-C~~~~~~l~~~~~~~~-----~~~vv~Is~--- 82 (163)
T d1psqa_ 14 KQLQVGDKAL--DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGI-CSTQTRRFNEELAGLD-----NTVVLTVSM--- 82 (163)
T ss_dssp CCCCTTSBCC--CCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHH-HHHHHHHHHHHTTTCT-----TEEEEEEES---
T ss_pred CCCCCCCCCC--CeEEECCCCCEEehHHhCCcEEEEEecccccccc-chhhHHHHHHHHHhhc-----ccceEEEEe---
Confidence 5788999999 999999999999999999999999998 779996 9999999988877764 477788886
Q ss_pred CCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChhHH
Q 020776 230 RDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNSL 308 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~~l 308 (321)
|+++..++|.+.++..+..+.. .+....+++.||+...+. . ...+++||||++|+|++.. ..+...+.-
T Consensus 83 -d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ygv~~~~~-------~-~~~Ra~fvID~~G~I~y~~~~~~~~~~~~ 152 (163)
T d1psqa_ 83 -DLPFAQKRWCGAEGLDNAIMLS-DYFDHSFGRDYALLINEW-------H-LLARAVFVLDTDNTIRYVEYVDNINSEPN 152 (163)
T ss_dssp -SCHHHHHHHHHHHTCTTSEEEE-CTTTCHHHHHHTCBCTTT-------C-SBCCEEEEECTTCBEEEEEECSBTTSCCC
T ss_pred -ccHHHHHHHHHHcCCcceeeec-cccchhHHHhheeecccc-------c-ceeEEEEEECCCCEEEEEEEcCCCCCCCC
Confidence 4578899999999866544322 233457899999875432 1 1345689999999999874 232322222
Q ss_pred HHHHHHHHHH
Q 020776 309 ADGIIKEIKQ 318 (321)
Q Consensus 309 ~~~l~~~L~~ 318 (321)
.+++.+.|++
T Consensus 153 ~~~il~alk~ 162 (163)
T d1psqa_ 153 FEAAIAAAKA 162 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3445555554
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=99.83 E-value=1e-20 Score=168.77 Aligned_cols=147 Identities=16% Similarity=0.246 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeecccc---CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDF---LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~---kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
|.||+++| +|++.+.+|+ +.+.++ +|||+||+|| +.|||. |..|++.|++.+++|+++ ++.+|+||+|.
T Consensus 1 PlIGd~aP--dF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpv-CttEl~~~~~~~~ef~~~---g~~vigiS~Ds 73 (237)
T d2zcta1 1 PLIGERFP--EMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPV-CTTEFVSFARRYEDFQRL---GVDLIGLSVDS 73 (237)
T ss_dssp CCTTSBCC--CEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHH-HHHHHHHHHHTHHHHHHT---TEEEEEEESSC
T ss_pred CCCCCCCC--CeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCcc-CHHHHHHHHhhhhhhccC---CcceeeccCCc
Confidence 56999999 9999999994 777664 7999999998 999995 999999999999999987 68899999864
Q ss_pred CCCCHHHHHHHHHH------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 229 ERDTVEQVREYVKE------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
.+..++|.+. .+++|+++ .|...+++++||+..... .....+++||||++|+|++.+...
T Consensus 74 ----~~sh~~w~~~~~~~~~~~l~fpll---sD~~~~vak~yGv~~~~~-------~~~~~RatFIIDpdG~Ir~~~~~~ 139 (237)
T d2zcta1 74 ----VFSHIKWKEWIERHIGVRIPFPII---ADPQGTVARRLGLLHAES-------ATHTVRGVFIVDARGVIRTMLYYP 139 (237)
T ss_dssp ----HHHHHHHHHHHHHHHCCCCCSCEE---ECGGGHHHHHTTCC-----------CCTTCCEEEEECTTSBEEEEEECC
T ss_pred ----HHHHHHHhhhhhhhcccccccccc---cCcchHHHHHcCCccccc-------cccceeeeEEECCCCEEEEEEEeC
Confidence 4555555543 45788888 788899999999854221 112457899999999999886666
Q ss_pred CChhHHHHHHHHHHHHHh
Q 020776 303 NDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 303 ~~~~~l~~~l~~~L~~~k 320 (321)
.+.....++|++.|+.+|
T Consensus 140 ~~~gR~~dEiLr~l~aLQ 157 (237)
T d2zcta1 140 MELGRLVDEILRIVKALK 157 (237)
T ss_dssp TTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 666666777888877765
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=2.1e-20 Score=158.02 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=102.3
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
....++||+++| +|+|.+.+|++++|++++||++||+||.+ |||. |..+++.|++.++ +. ++.+++|+.|
T Consensus 13 ~g~~p~iG~~aP--~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~-C~~e~~~l~~~~~---~~---g~~vv~Is~d 83 (166)
T d1xvqa_ 13 VGELPAVGSPAP--AFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPV-CATSVRTFDERAA---AS---GATVLCVSKD 83 (166)
T ss_dssp SSCCCCTTSBCC--CCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSC-CCHHHHHHHHHHH---HT---TCEEEEEESS
T ss_pred CCCCCCCcCCCC--CeEEECCCCCEEehHHhCCcEEEEEeeecccccc-cHHHHHHHhhhcc---cc---cccccccccc
Confidence 334689999999 99999999999999999999999999955 6675 9999988866544 33 4667888965
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChh
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVN 306 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~ 306 (321)
++..+++|.++++..+..+. .+....+.+.|++...... .+ -...+++||||++|+|++.+ ..+...+
T Consensus 84 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~----~~-g~~~ra~fvID~~G~I~y~~~~~~~~~~ 152 (166)
T d1xvqa_ 84 ----LPFAQKRFCGAEGTENVMPA--SAFRDSFGEDYGVTIADGP----MA-GLLARAIVVIGADGNVAYTELVPEIAQE 152 (166)
T ss_dssp ----CHHHHTTCC------CEEEE--ECTTSSHHHHTTCBBCSST----TT-TSBCSEEEEECTTSBEEEEEECSBTTCC
T ss_pred ----hHHHHHHHHHHhCCcccccc--cchhHHHHHHhCeeeccCc----cc-CceeeEEEEEeCCCEEEEEEEcCCCCCC
Confidence 46888899998887776553 2334567888988753211 11 12346799999999999864 2333333
Q ss_pred HHHHHHHHHHHH
Q 020776 307 SLADGIIKEIKQ 318 (321)
Q Consensus 307 ~l~~~l~~~L~~ 318 (321)
...+++.++|+.
T Consensus 153 ~~~d~il~aL~a 164 (166)
T d1xvqa_ 153 PNYEAALAALGA 164 (166)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 234445555543
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=99.81 E-value=3.1e-20 Score=156.78 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=105.7
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
....++||+++| +|+|+|.+|++++|++++||++||+||.+||.++|..|++.|++.+++++ ++.+++||+
T Consensus 12 ~g~~p~vG~~AP--dF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----~~~vi~iS~-- 82 (164)
T d1q98a_ 12 GGHFPQVGEIVE--NFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----NTIVLCISA-- 82 (164)
T ss_dssp ESCCCCTTCBCC--CCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----TEEEEEEES--
T ss_pred CCCCCCCCCCCC--CcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----cceEEeecC--
Confidence 445689999999 99999999999999999999999999966443359999999999999885 477889996
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|+++..++|.+++++.+..+.. .+....+++.|++....... +. ...+++||||++|+|++..
T Consensus 83 --d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~----~g-~~~Ra~fvID~~G~I~y~~ 145 (164)
T d1q98a_ 83 --DLPFAQARFCGAEGIENAKTVS-TFRNHALHSQLGVDIQTGPL----AG-LTSRAVIVLDEQNNVLHSQ 145 (164)
T ss_dssp --SCHHHHTTCTTTTTCTTEEEEE-CTTCTHHHHHTTCEECSSTT----TT-SBCCEEEEECTTSBEEEEE
T ss_pred --CcHHHHHHHHHHhCCccccccc-cccchhHHHhhceecccCcc----cc-CcccEEEEECCCCEEEEEE
Confidence 5688999999999987543322 23346788999987643211 11 1347899999999999874
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.81 E-value=6.3e-20 Score=155.90 Aligned_cols=139 Identities=24% Similarity=0.303 Sum_probs=113.3
Q ss_pred CCeEEE----cCCCCeeeccccCC-CeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 162 GPFKLI----NHDGKNVTEKDFLG-KWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 162 p~f~l~----d~~G~~vsLsd~kG-K~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
|+|+++ |.++++++|+|++| |+|||+|| +.|||. |..|+..+++.+++|++. ++.+|+||. |++..
T Consensus 3 PdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~-Ct~e~~~f~~~~~~f~~~---g~~vigIS~----D~~~~ 74 (170)
T d2h01a1 3 PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFV-CPSEIIALDKALDSFKER---NVELLGCSV----DSKFT 74 (170)
T ss_dssp CCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSS-CCHHHHHHHHTHHHHHHT---TEEEEEEES----SCHHH
T ss_pred CCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCc-cchhhHHHhhhhhhhhcC---CeeEecccC----CcHHH
Confidence 499999 45667899999998 89999998 899996 999999999999999987 788999995 56788
Q ss_pred HHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 236 VREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 236 l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
.++|.+++ +.+|+.+ .|..+.++++||+.... ....+.+||||++|+|++.+.........
T Consensus 75 ~~~~~~~~~~~~~~~~~~f~ll---sD~~~~~~~~ygv~~~~---------~~~~R~tfiId~~G~I~~~~~~~~~~~~~ 142 (170)
T d2h01a1 75 HLAWKKTPLSQGGIGNIKHTLI---SDISKSIARSYDVLFNE---------SVALRAFVLIDKQGVVQHLLVNNLALGRS 142 (170)
T ss_dssp HHHHHTSCGGGTCCCSCSSEEE---ECTTSHHHHHTTCEETT---------TEECCEEEEECTTSBEEEEEEGGGSSGGG
T ss_pred HHhHhhhhhhhccccccCCcee---EcCccHHHHHhCCcccc---------ccceeeeEEEcCCCeEEEEEEecCCCCCC
Confidence 88998764 3788888 78889999999995421 13456799999999999987665655556
Q ss_pred HHHHHHHHHHHh
Q 020776 309 ADGIIKEIKQYK 320 (321)
Q Consensus 309 ~~~l~~~L~~~k 320 (321)
.+++++.|++++
T Consensus 143 ~~eil~~l~~lq 154 (170)
T d2h01a1 143 VDEILRLIDALQ 154 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 677777777664
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.9e-20 Score=162.81 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
..||++|| +|++.+.+|+ ++|++++| ||+||+|| +.|||. |..|+..+++.+++|++. ++.+++||+|
T Consensus 1 L~VGd~AP--dF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpv-C~~El~~~~~~~~~f~~~---g~~v~giS~D--- 70 (220)
T d1prxa_ 1 LLLGDVAP--NFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPV-CTTELGRAAKLAPEFAKR---NVKLIALSID--- 70 (220)
T ss_dssp CCTTCBCC--CCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHH-HHHHHHHHHHHHHHHHTT---TEEEEEEESS---
T ss_pred CCCCCCCC--CcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCc-chhhHHHHHHHHHHhhcc---cceeeccccc---
Confidence 36899999 9999999996 99999987 89999999 678885 999999999999999976 7899999975
Q ss_pred CCHHHHHHHHHHh----------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 231 DTVEQVREYVKEF----------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 231 Dt~e~l~~~~~~~----------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+.+...+|.+.. +++|+.+ .|..++++++||+........ .. .....+++||||++|+|++.+.
T Consensus 71 -s~~sh~~~~~~~~~~~~~~~~~~l~fpll---sD~~~~va~~ygv~~~~~~~~-~~-~~~~~RatFIID~~g~Ir~~~~ 144 (220)
T d1prxa_ 71 -SVEDHLAWSKDINAYNSEEPTEKLPFPII---DDRNRELAILLGMLDPAEKDE-KG-MPVTARVVFVFGPDKKLKLSIL 144 (220)
T ss_dssp -CHHHHHHHHHHHHHHTTSCCCSCCSSCEE---ECTTCHHHHHTTSSCSCTTCS-SS-CCTTCCEEEEECTTSBEEEEEE
T ss_pred -cccchhhhhhhhhhccccccccCcccccc---cCcccHHHHHhCCcccccccc-cc-ceeeeEEEEEEcCccceeEEEE
Confidence 456666665542 4788998 788899999999976443111 11 1235578999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q 020776 301 KNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 301 ~~~~~~~l~~~l~~~L~~~k 320 (321)
.........+++.+.+++++
T Consensus 145 ~~~~~gR~~dEiLr~l~alq 164 (220)
T d1prxa_ 145 YPATTGRNFDEILRVVISLQ 164 (220)
T ss_dssp CCTTBCCCHHHHHHHHHHHH
T ss_pred ecCCcccchHHHHHHHHHHh
Confidence 66666666777777777664
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.79 E-value=3e-19 Score=157.41 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=122.3
Q ss_pred CCCCCCCCCCCCeEEEcCCCC-eeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGK-NVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~-~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
+..||+++| +|++.+.++. +++++++ +|||+||+|| +.||| +|..|+..+++.+++|++. ++.+++||.|
T Consensus 1 gi~iGd~aP--dF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTp-vCttEl~~f~~~~~eF~~~---~~~vigiS~D- 73 (219)
T d1xcca_ 1 GYHLGATFP--NFTAKASGIDGDFELYKYIENSWAILFSHPNDFTP-VCTTELAELGKMHEDFLKL---NCKLIGFSCN- 73 (219)
T ss_dssp CCCTTCBCC--CCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCH-HHHHHHHHHHHTHHHHHTT---TEEEEEEESS-
T ss_pred CCcCCCCCC--CcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCc-ccchhHHHHHHhhhhhccc---ceEEEeecCc-
Confidence 467999999 9999876433 6999996 7999999999 67777 6999999999999999976 7999999964
Q ss_pred CCCCHHHHHHHHHHh-------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 229 ERDTVEQVREYVKEF-------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~-------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.+..++|.+.. +++|+.+ .|..++++++||+........ .-.....+++||||++|+|++.+..
T Consensus 74 ---s~~sh~~w~~~~~~~~~~~~l~fpll---sD~~~~va~~ygv~~~~~~~~--~~~~~~~R~tFiIDp~g~Ir~~~~~ 145 (219)
T d1xcca_ 74 ---SKESHDKWIEDIKYYGKLNKWEIPIV---CDESRELANKLKIMDEQEKDI--TGLPLTCRCLFFISPEKKIKATVLY 145 (219)
T ss_dssp ---CHHHHHHHHHHHHHHHTCSCCCCCEE---ECTTSHHHHHHTCEEEEEECT--TSCEEECEEEEEECTTSBEEEEEEE
T ss_pred ---cHhHHhHHhhhhHhhcccCCCCcccc---cccccHHHHHhCCcccccccC--cccceeeeeeEEEcCcceEEEEEEe
Confidence 578888888775 6889999 788899999999976543111 0011234789999999999987655
Q ss_pred CCChhHHHHHHHHHHHHHh
Q 020776 302 NNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~~~k 320 (321)
........+++++.|+++|
T Consensus 146 ~~~~gr~~~EiLr~l~aLQ 164 (219)
T d1xcca_ 146 PATTGRNAHEILRVLKSLQ 164 (219)
T ss_dssp CTTBCCCHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHH
Confidence 6666667777777777765
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=6.8e-19 Score=151.31 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=109.1
Q ss_pred CeEEEcCC-CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHH
Q 020776 163 PFKLINHD-GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVR 237 (321)
Q Consensus 163 ~f~l~d~~-G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~ 237 (321)
||+++|.+ |++++|++++||+|||+||||||++ |..+.+.|++++++|+++ ++.+|++.++. +.++.++++
T Consensus 5 df~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~-t~~~y~~L~~L~~ky~~~---g~~Il~fP~nqF~~qE~~~~~ei~ 80 (184)
T d2f8aa1 5 AFSARPLAGGEPVSLGSLRGKVLLIENVASLGGT-TVRDYTQMNELQRRLGPR---GLVVLGFPCNQFGHQENAKNEEIL 80 (184)
T ss_dssp GCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTT-HHHHHHHHHHHHHHHGGG---TEEEEEEECCCSTTTTCSCHHHHH
T ss_pred eeEEEECCCCCEecHHHcCCCEEEEEEecccCCc-chhhhHHHHHhhhhhccc---ceeEEEeeccccccccccchhhhh
Confidence 89999986 7889999999999999999999998 999999999999999988 68888888762 345788999
Q ss_pred HHHHH------hCCCceeec-----CC-hHHHHH-HHHHcC--------ceEeecCC---CCCCcccccceEEEEEcCCC
Q 020776 238 EYVKE------FHPKLIGLT-----GS-PDEIRN-IARAYR--------VYYMKTAE---EDSDYLVDHSIVMYLMSPKM 293 (321)
Q Consensus 238 ~~~~~------~~~~~~~l~-----~~-~d~~~~-~a~~yg--------v~~~p~~~---~~~~y~v~~~~~~~LID~dG 293 (321)
+|++. ++++|++.. |. ..+.-. +..... +...|... ....-.+.+..+.||||++|
T Consensus 81 ~f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G 160 (184)
T d2f8aa1 81 NSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDG 160 (184)
T ss_dssp HHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTS
T ss_pred hhhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCC
Confidence 99974 456666543 11 112211 222222 11111000 00011234445689999999
Q ss_pred eEEEEeCCCCChhHHHHHHHHHHH
Q 020776 294 EFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 294 ~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+++.+|.+..+++++.++|+++|.
T Consensus 161 ~vv~rf~~~~~p~~i~~~Ie~lL~ 184 (184)
T d2f8aa1 161 VPLRRYSRRFQTIDIEPDIEALLS 184 (184)
T ss_dssp CEEEEECTTSCGGGGHHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHHHhC
Confidence 999999999999999999988873
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.42 E-value=8.6e-13 Score=102.02 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=76.0
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.+..++++|++||++||++ |+.+.|.+.++..+.....+..|.++.|+.|.
T Consensus 11 ~~~~~~v~i~~F~a~wC~~-C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~---------------------------- 61 (107)
T d1a8la2 11 RNIDQDVRILVFVTPTCPY-CPLAVRMAHKFAIENTKAGKGKILGDMVEAIE---------------------------- 61 (107)
T ss_dssp TTCCSCEEEEEEECSSCTT-HHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG----------------------------
T ss_pred HhcCCCeEEEEEEcCcccc-chhhChhHHhhhhhhhhccCCcEEEEEecccc----------------------------
Confidence 4455667788899999998 99999999999877655445567766666431
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
...++++|+|..+|+ ++++++|+++.++.|..+.+++.+.|.++|
T Consensus 62 ~~~l~~~~~V~~vPT---------------i~i~~~G~~~~~~~G~~~~~~~~~~i~~al 106 (107)
T d1a8la2 62 YPEWADQYNVMAVPK---------------IVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 106 (107)
T ss_dssp CHHHHHHTTCCSSCE---------------EEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ccccccccccccceE---------------EEEEeCCeEEEEEECCCCHHHHHHHHHHhh
Confidence 135688999999884 567899999999999999999999988876
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.7e-13 Score=114.45 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCeEEEc-CCCCeeecccc-CCCeEEEEEe-cCCCCCCcH-HHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 153 PSVGKAAIGGPFKLIN-HDGKNVTEKDF-LGKWTVIYFG-FTHCPDICP-DELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d-~~G~~vsLsd~-kGK~vLL~Fw-atwCp~vC~-~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.+||+.+| +|+|.+ .+|+.++++++ +||+|||+|+ ..|||. |. .+++.+.+.++++.++ |.. .++.+++|
T Consensus 3 ikVGd~aP--~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~-Ct~~~~~~~~~~~~~~~~~-g~~-~i~~~s~~- 76 (161)
T d1hd2a_ 3 IKVGDAIP--AVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPG-CSKTHLPGFVEQAEALKAK-GVQ-VVACLSVN- 76 (161)
T ss_dssp CCTTCBCC--CCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHH-HHHTHHHHHHHTHHHHHTT-TCC-EEEEEESS-
T ss_pred CCCCCcCC--CeEEEecCCCcEEEhHHHhCCCeEEEEEEecccccc-chhhhhhHHHhhhHHHHHc-CCe-EEEEEecC-
Confidence 57999999 999985 56899999995 8999999999 778885 95 5888999999999877 433 33456654
Q ss_pred CCCCHHHHHHHHHHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 229 ERDTVEQVREYVKEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
++..+++|.+..+. +++.+ .|..++++++||+.......+ ..+.+. +..+++|+++|+|++.+.
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~ll---sD~~~~~a~~~g~~~~~~~~g-~~~~~~-s~r~~~I~~~G~I~~~~v 142 (161)
T d1hd2a_ 77 ---DAFVTGEWGRAHKAEGKVRLL---ADPTGAFGKETDLLLDDSLVS-IFGNRR-LKRFSMVVQDGIVKALNV 142 (161)
T ss_dssp ---CHHHHHHHHHHTTCTTTCEEE---ECTTCHHHHHHTCBCCSTTHH-HHSSCC-BCCEEEEEETTEEEEEEE
T ss_pred ---chhhhhhhhhhcccccccccc---cCCcceeeeeeeeeeccccCc-cccccE-EeEEEEEECCCEEEEEEE
Confidence 56788888888765 46777 788899999999875432110 000111 223455556999988753
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=7.2e-14 Score=109.34 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=73.4
Q ss_pred eEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 164 f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
+.+.|.+.-.-.+.+..||+|||+||++||++ |....|.++++..++++. +.++.|.+|..
T Consensus 8 ~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~-C~~~~p~~~~l~~~~~~~----~~~~~i~~d~~-------------- 68 (111)
T d1xwaa_ 8 YQVKDKADLDGQLTKASGKLVVLDFFATWCGP-CKMISPKLVELSTQFADN----VVVLKVDVDEC-------------- 68 (111)
T ss_dssp EECCSHHHHHHHHHHHTTSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----EEEEEEETTTC--------------
T ss_pred EEECCHHHHHHHHHhcCCCEEEEEEECCcccC-ccccchhHHHHhhhcccc----eEEEEEEeecC--------------
Confidence 44444443333456668999999999999998 999999999999998753 77777775521
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
..++++|+|...|+ + ++-++|+++.++.|. +.+++.+.|+
T Consensus 69 --------------~~l~~~~~V~~~Pt--------------~-~~~~~G~~v~~~~G~-~~~~l~~~I~ 108 (111)
T d1xwaa_ 69 --------------EDIAMEYNISSMPT--------------F-VFLKNGVKVEEFAGA-NAKRLEDVIK 108 (111)
T ss_dssp --------------HHHHHHTTCCSSSE--------------E-EEEETTEEEEEEESC-CHHHHHHHHH
T ss_pred --------------cchhhcCCCccccE--------------E-EEEECCEEEEEEeCC-CHHHHHHHHH
Confidence 34577899998885 4 444899999998764 5555554444
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=2.7e-13 Score=106.58 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=71.3
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecC
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTG 252 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~ 252 (321)
...+++.+||+|||+||++||++ |..+.|.+.+..+..+.. .++..+.+.++.+
T Consensus 14 ~~~l~~~~gK~vlv~F~a~wC~~-C~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~----------------------- 67 (117)
T d2fwha1 14 NQALVEAKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQKAL--ADTVLLQANVTAN----------------------- 67 (117)
T ss_dssp HHHHHHHTTSCEEEEEECTTCHH-HHHHHHHTTTSHHHHHHT--TTSEEEEEECTTC-----------------------
T ss_pred HHHHHHcCCCeEEEEEecccCCc-ccccchhHHhHHHHHHhc--cceEEEecccccc-----------------------
Confidence 34456678999999999999998 999988874433322221 1344444444321
Q ss_pred ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE--EeCCCCChhHHHHHHHH
Q 020776 253 SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK--FFGKNNDVNSLADGIIK 314 (321)
Q Consensus 253 ~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~--~~~~~~~~~~l~~~l~~ 314 (321)
.+....+++.|+|.++|+ ++++|++|+++. ++.|..+++++.+.|.+
T Consensus 68 -~~~~~~l~~~~~v~~~Pt--------------~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 68 -DAQDVALLKHLNVLGLPT--------------ILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp -CHHHHHHHHHTTCCSSSE--------------EEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred -hhHHHHHHhhhehhhceE--------------EEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 344567788999999887 999999999874 45678888877776654
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.36 E-value=2.2e-12 Score=99.98 Aligned_cols=88 Identities=13% Similarity=0.197 Sum_probs=72.6
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+|++||+||++||++ |....|.+.++..++.+. +.++.|++|.. ..+
T Consensus 20 ~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~----~~~~~vd~d~~----------------------------~~l 66 (108)
T d1thxa_ 20 EQPVLVYFWASWCGP-CQLMSPLINLAANTYSDR----LKVVKLEIDPN----------------------------PTT 66 (108)
T ss_dssp SSCEEEEEECTTCTT-HHHHHHHHHHHHHHTTTT----CEEEEEESTTC----------------------------HHH
T ss_pred CCcEEEEEECCCCCC-ccccchHHHHHHHhcCCc----ceeceeccccc----------------------------HHH
Confidence 589999999999998 999999999999888653 66677776531 346
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++|+|...|+ ++++ ++|+.+.++.|..+.+++.+.|++.|
T Consensus 67 ~~~~~I~~~Pt--------------~~~~-~~g~~v~~~~G~~~~~~l~~~i~~~L 107 (108)
T d1thxa_ 67 VKKYKVEGVPA--------------LRLV-KGEQILDSTEGVISKDKLLSFLDTHL 107 (108)
T ss_dssp HHHTTCCSSSE--------------EEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHhcccCCCE--------------EEEE-ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence 88999999886 6666 58999999889999888888888765
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.36 E-value=4e-13 Score=103.81 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|++||+||++||++ |....|.+.++..+++++ +.++.|++|.. ..
T Consensus 16 ~~k~vvv~F~a~wC~~-C~~~~~~~~~l~~~~~~~----~~~~~vd~~~~----------------------------~~ 62 (105)
T d1nw2a_ 16 GDKPVLVDFWAAWCGP-CRMMAPVLEEFAEAHADK----VTVAKLNVDEN----------------------------PE 62 (105)
T ss_dssp SSSCEEEEEECTTCHH-HHHHHHHHHHHHHHHTTT----CEEEEEETTTC----------------------------HH
T ss_pred CCCcEEEEEECCCCCC-cccccchhhhhhhhcCCc----eEEEEEECCCC----------------------------cc
Confidence 4689999999999998 999999999999999754 77777775521 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|+|...|+ +++ -++|+.+.++.|..+.+++.+.|.++|
T Consensus 63 ~~~~~~V~~~Pt--------------~~~-~~~G~~~~~~~G~~~~~~l~~~i~~~L 104 (105)
T d1nw2a_ 63 TTSQFGIMSIPT--------------LIL-FKGGEPVKQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp HHHHTTCCBSSE--------------EEE-EETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred cHHHCCcceeeE--------------EEE-EECCEEEEEEECCCCHHHHHHHHHHHh
Confidence 578899999985 444 479999999989888887777666554
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.35 E-value=1e-12 Score=101.73 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |....|.+.++..++..+ +.++.|++|.. ..
T Consensus 18 s~kpvlv~F~a~wC~~-C~~~~p~~~~~~~~~~~~----~~~~~vd~d~~----------------------------~~ 64 (107)
T d1dbya_ 18 SSVPVLVDFWAPWCGP-CRIIAPVVDEIAGEYKDK----LKCVKLNTDES----------------------------PN 64 (107)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----CEEEEEETTTC----------------------------HH
T ss_pred CCCcEEEEEECCCCCC-ccccChHHHHHHHhhccc----ceEEEEecccc----------------------------hh
Confidence 4689999999999998 999999999998888654 66677776532 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|+|...|+ ++++ ++|+.+.++.|..+.+++.+.|.+.|
T Consensus 65 l~~~~~V~~~Pt--------------~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L 106 (107)
T d1dbya_ 65 VASEYGIRSIPT--------------IMVF-KGGKKCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp HHHHHTCCSSCE--------------EEEE-SSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred HHHHhcccceEE--------------EEEE-ECCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 688899999996 5666 58999999989889888888877765
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.6e-12 Score=100.75 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=72.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |+...|.+.++..++.. ++.++.+.+|.. ..
T Consensus 19 ~~~~v~v~F~a~wC~~-C~~~~~~~~~~a~~~~~----~~~~~~vd~d~~----------------------------~~ 65 (108)
T d2trxa_ 19 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG----KLTVAKLNIDQN----------------------------PG 65 (108)
T ss_dssp CSSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TEEEEEEETTTC----------------------------TT
T ss_pred CCCcEEEEEECCCCCC-ccccCcHHHHHHHHhhc----ceeeeeccccch----------------------------hh
Confidence 3689999999999998 99999999999887754 477777776532 23
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|+|...|+ + ++-++|+.+.++.|..+.+++.+.|++.|
T Consensus 66 l~~~~~v~~~PT--------------~-~~~~~G~~v~~~~G~~~~~~l~~~i~~~L 107 (108)
T d2trxa_ 66 TAPKYGIRGIPT--------------L-LLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp HHHHTTCCSSSE--------------E-EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEE--------------E-EEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence 578899999885 4 44479999999989999998888888776
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.33 E-value=1.3e-12 Score=100.59 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=71.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+|++||+||++||++ |....|.+.++.+++.++ +.++.|+.|.. ..+
T Consensus 17 ~~~vlv~F~a~wC~~-C~~~~~~~~~l~~~~~~~----~~~~~v~~d~~----------------------------~~l 63 (104)
T d1fb6a_ 17 EVPVMVDFWAPWCGP-CKLIAPVIDELAKEYSGK----IAVYKLNTDEA----------------------------PGI 63 (104)
T ss_dssp SSCEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT----CEEEEEETTTC----------------------------HHH
T ss_pred CCcEEEEEEcCccCC-ccccCchhHHHHHhhcCc----cceeEEecccc----------------------------hhh
Confidence 689999999999998 999999999999998754 55566665531 346
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++|+|...|+ +++ .++|+.+.++.|..+.+++.+.|.+.|
T Consensus 64 ~~~~~V~~~Pt--------------~~~-~~~G~~v~~~~G~~~~~~l~~~i~~~L 104 (104)
T d1fb6a_ 64 ATQYNIRSIPT--------------VLF-FKNGERKESIIGAVPKSTLTDSIEKYL 104 (104)
T ss_dssp HHHTTCCSSSE--------------EEE-EETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred hhhcceeeeeE--------------EEE-EEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence 88999999995 444 479999999989889888888877653
|
| >d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Plant peroxiredoxin species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]
Probab=99.33 E-value=2.4e-12 Score=107.31 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=99.7
Q ss_pred CCCCCCCCCCCCeEEE----cCCCCeeeccc-cCCCeEEEEEe-cCCCCCCcH-HHHHHHHHHHHHHhhhcCCcEEEEEE
Q 020776 152 GPSVGKAAIGGPFKLI----NHDGKNVTEKD-FLGKWTVIYFG-FTHCPDICP-DELQKLAAAVDKIKENSGIDIVPAFI 224 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~----d~~G~~vsLsd-~kGK~vLL~Fw-atwCp~vC~-~elp~L~~l~~~~~~~~g~~v~vV~I 224 (321)
...||+++| +|+|. +.+++++++++ ++||+|||+|+ ..|+| +|. ++++...+..+++.++ |. ..++.|
T Consensus 3 ~l~vGd~~P--df~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~-~Ct~e~~~~~~~~~d~~~~~-g~-~~v~~i 77 (162)
T d1tp9a1 3 PIAVGDVLP--DGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTP-TCSLKHVPGFIEKAGELKSK-GV-TEILCI 77 (162)
T ss_dssp CCCTTCBCC--CCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCH-HHHHTHHHHHHHHHHHHHHT-TC-CCEEEE
T ss_pred CCCCCCCCC--CeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccch-hhhhhcchHHHHhhhHHHHc-CC-cceeee
Confidence 468999999 99996 44567899988 59999999999 56666 696 5677888888888776 32 234566
Q ss_pred eeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 225 SVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
|+ |++..+++|....+.. ++.+ .|...+++++||+........ +.....+.+|||| ||+|++.+.
T Consensus 78 sv----d~~~~~~~~~~~~~~~~~~~~l---sD~~~~~~~~~g~~~~~~~~g---~g~~~~R~tfiId-dg~I~~~~v 144 (162)
T d1tp9a1 78 SV----NDPFVMKAWAKSYPENKHVKFL---ADGSATYTHALGLELDLQEKG---LGTRSRRFALLVD-DLKVKAANI 144 (162)
T ss_dssp ES----SCHHHHHHHHHTCTTCSSEEEE---ECTTSHHHHHTTCEEEETTTT---SEEEECCEEEEEE-TTEEEEEEE
T ss_pred ec----cchhhhhhhhhhcccccccccc---cchhhHHHhhhhhcccccccc---CCcEEEEEEEEEE-CCEEEEEEE
Confidence 75 4579999999988754 6666 778889999999877554211 2223457799999 899998764
|
| >d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: N-terminal, Prx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=99.30 E-value=4.7e-12 Score=105.74 Aligned_cols=134 Identities=11% Similarity=0.072 Sum_probs=93.9
Q ss_pred CCCCCCCCCCeEEEcCCC---Ceeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLINHDG---KNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G---~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
..|+.+| +|+++...| +.++++++ +||+|||+|+.---.++|..++..+...+.++.+..+.+.+++.++.
T Consensus 2 ~~Gd~~P--dftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~--- 76 (163)
T d1nm3a2 2 MEGKKVP--QVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN--- 76 (163)
T ss_dssp CTTSBCC--CCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS---
T ss_pred CCCCCCC--CeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecC---
Confidence 4689999 999997766 47999995 99999999984444446999988766665544433355566555542
Q ss_pred CCCHHHHHHHHHHh-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 230 RDTVEQVREYVKEF-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++..++++.+.. ..++..+ .|....++++||+.......+ ......+.+|||| ||+|++.+..
T Consensus 77 --d~~~~~a~~~~~~~~~~~ll---sD~~~~~~~~~g~~~~~~~~g---~g~~s~R~~~Iid-dG~I~~~~v~ 140 (163)
T d1nm3a2 77 --DTFVMNAWKEDEKSENISFI---PDGNGEFTEGMGMLVGKEDLG---FGKRSWRYSMLVK-NGVVEKMFIE 140 (163)
T ss_dssp --CHHHHHHHHHHTTCTTSEEE---ECTTSHHHHHTTCEEECTTTT---CCEEECCEEEEEE-TTEEEEEEEC
T ss_pred --CHHHHHHHhhhhccCceeee---ccCChHHHHHhhhhccccccc---cccccceEEEEEe-CCEEEEEEEe
Confidence 345555555544 5678888 778889999999877544221 1223557899999 9999887643
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.27 E-value=3.9e-12 Score=99.90 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |....|.|.++.+++. ++.++.|++|. ...
T Consensus 25 ~~~~vvv~F~a~wC~~-C~~~~p~l~~l~~~~~-----~v~~~~vd~d~----------------------------~~~ 70 (113)
T d1r26a_ 25 EDILTVAWFTAVWCGP-CKTIERPMEKIAYEFP-----TVKFAKVDADN----------------------------NSE 70 (113)
T ss_dssp SSSCEEEEEECTTCHH-HHHTHHHHHHHHHHCT-----TSEEEEEETTT----------------------------CHH
T ss_pred CCCeEEEEEECCCCcc-chhhceeccccccccc-----ccccccccccc----------------------------chh
Confidence 4689999999999998 9999999999998874 46667666542 145
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|+|...|+ +++-++|+.+.++.| .+++.+.+.|+++|++
T Consensus 71 l~~~~~V~~~Pt---------------~~~~~~G~~v~~~~G-~~~~~l~~~l~~~ike 113 (113)
T d1r26a_ 71 IVSKCRVLQLPT---------------FIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD 113 (113)
T ss_dssp HHHHTTCCSSSE---------------EEEEETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred hHHHccccCCCE---------------EEEEECCEEEEEEeC-CCHHHHHHHHHHHhcC
Confidence 688999999885 455589999999877 4688888888888864
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.7e-12 Score=99.05 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=70.2
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
-.+|+++|+||++||++ |....|.+.++.+++. ++.++.|++|. ..
T Consensus 19 ~~~klvvv~F~a~wC~~-Ck~~~p~~~~la~~~~-----~~~f~~vd~d~----------------------------~~ 64 (107)
T d1gh2a_ 19 AGSRLAVVKFTMRGCGP-CLRIAPAFSSMSNKYP-----QAVFLEVDVHQ----------------------------CQ 64 (107)
T ss_dssp TTTSCEEEEEECSSCHH-HHHHHHHHHHHHHHCT-----TSEEEEEETTT----------------------------SH
T ss_pred CCCCEEEEEEECCCCCC-ccccchhhhccccccc-----ccccccccccc----------------------------ch
Confidence 35789999999999998 9999999999998875 35556566542 13
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.+++.|+|...|+ +++-++|+.+.++.| .+.+++.+.|.+.|+
T Consensus 65 ~l~~~~~v~~~Pt---------------~~~~~~G~~v~~~~G-~~~~~l~~~i~k~le 107 (107)
T d1gh2a_ 65 GTAATNNISATPT---------------FQFFRNKVRIDQYQG-ADAVGLEEKIKQHLE 107 (107)
T ss_dssp HHHHHTTCCSSSE---------------EEEEETTEEEEEEES-SCHHHHHHHHHHHHC
T ss_pred hhhhhcCceeceE---------------EEEEECCEEEEEEeC-CCHHHHHHHHHHhhC
Confidence 4678899999885 455589999999877 588888888877764
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.27 E-value=3.7e-12 Score=99.96 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||++||++ |....|.+.++.+++. ++.++.|..|. ...
T Consensus 27 ~~~~vlv~F~a~wC~~-C~~~~p~~~~l~~~~~-----~~~~~~vd~~~----------------------------~~~ 72 (114)
T d1xfla_ 27 SKTLVVVDFTASWCGP-CRFIAPFFADLAKKLP-----NVLFLKVDTDE----------------------------LKS 72 (114)
T ss_dssp TTCEEEEEEECTTCHH-HHHHHHHHHHHHHHCS-----SEEEEEEETTT----------------------------SHH
T ss_pred cCCeEEEEEEcCCCCC-ccccccchhhhccccc-----ccceeEEEeee----------------------------cee
Confidence 4799999999999998 9999999999988775 46666666442 235
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|+|...|+ ++++ ++|+++.++.| .+.+++.+.|.+.|
T Consensus 73 l~~~~~V~~~Pt--------------~~~~-~~G~~v~~~~G-~~~~~l~~~i~k~l 113 (114)
T d1xfla_ 73 VASDWAIQAMPT--------------FMFL-KEGKILDKVVG-AKKDELQSTIAKHL 113 (114)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred eccccceeeeEE--------------EEEE-ECCEEEEEEeC-cCHHHHHHHHHHhh
Confidence 678899999885 4444 89999999877 46777777666654
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.26 E-value=6e-12 Score=98.50 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=68.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |....|.++++.+++.+ ++.++.|++|. ...
T Consensus 23 ~~k~vvv~f~a~wC~~-C~~~~p~~~~l~~~~~~----~v~~~~vd~d~----------------------------~~~ 69 (112)
T d1ep7a_ 23 EHKPIVVDFTATWCGP-CKMIAPLFETLSNDYAG----KVIFLKVDVDA----------------------------VAA 69 (112)
T ss_dssp HTCCEEEEEECTTCHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTT----------------------------THH
T ss_pred cCCeEEEEEEcCCcCC-Ccccchhhhhhhhcccc----eEEEEEeeccc----------------------------ccc
Confidence 5799999999999998 99999999999999864 36677777542 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|+|...|+ +++-++|+.+.++.| .+.+++.+.|.+..
T Consensus 70 l~~~~~v~~~Pt---------------~~~~~~G~~v~~~~G-~~~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 70 VAEAAGITAMPT---------------FHVYKDGVKADDLVG-ASQDKLKALVAKHA 110 (112)
T ss_dssp HHHHHTCCBSSE---------------EEEEETTEEEEEEES-CCHHHHHHHHHHHH
T ss_pred ccccccccCCCE---------------EEEEECCEEEEEEeC-cCHHHHHHHHHHHh
Confidence 678899999985 444479999999877 46666666665543
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=5.3e-12 Score=97.49 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |....|.+.++.+++.+ +.++-|.+|. ...
T Consensus 19 ~~k~vvv~F~a~wC~~-C~~~~p~~~~l~~~~~~-----~~~~~vd~d~----------------------------~~~ 64 (105)
T d2ifqa1 19 GDKLVVVDFSATWCGP-CKMIKPFFHSLSEKYSN-----VIFLEVDVDD----------------------------CQD 64 (105)
T ss_dssp TTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCTT-----SEEEEEETTT----------------------------CHH
T ss_pred CCCEEEEEEEcCCccc-hhhhhhhhhhhcccccc-----ceeeeccccc----------------------------CHh
Confidence 4689999999999998 99999999999888752 3455555442 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|+|...|+ ++++ ++|+.+.++.|. +.+++.+.|.++
T Consensus 65 ~~~~~~V~~~Pt--------------~~~~-~~G~~v~~~~G~-~~~~l~~~i~~~ 104 (105)
T d2ifqa1 65 VASECEVKCMPT--------------FQFF-KKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp HHHHTTCCBSSE--------------EEEE-ETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred HHHHcCceEEEE--------------EEEE-ECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 577899999885 4444 899999998774 677666666554
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.24 E-value=3.2e-12 Score=101.44 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=68.0
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
...+++|+|.||++|||+ |....|.|.++.++|.+. ++.++.|+ .|..
T Consensus 27 ~~~~~~vll~f~a~wCp~-C~~~~pvl~eL~~~~~~~---~~~~~~Vd----------------------------~d~~ 74 (119)
T d2es7a1 27 RVGDGVILLSSDPRRTPE-VSDNPVMIAELLREFPQF---DWQVAVAD----------------------------LEQS 74 (119)
T ss_dssp -CCSEEEEECCCSCC-----CCHHHHHHHHHHTCTTS---CCEEEEEC----------------------------HHHH
T ss_pred hCCCcEEEEeecCCCCcc-HHHHHHHHHHHHHhcCCC---ceEEEEEE----------------------------CCCC
Confidence 334678999999999998 999999999999998643 45555444 3455
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.++++.|||...|+ ++++ ++|+.+..+.|..+.+++.+.|+++|+
T Consensus 75 ~~l~~~~~V~~~Pt--------------~~~~-~~G~~v~~~~G~~~~~~l~~~i~~lLd 119 (119)
T d2es7a1 75 EAIGDRFNVRRFPA--------------TLVF-TDGKLRGALSGIHPWAELLTLMRSIVD 119 (119)
T ss_dssp HHHHHTTTCCSSSE--------------EEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred HHHHHhcCcCcceE--------------EEEE-EcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence 77899999999996 5555 899999999999999999998888763
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.7e-12 Score=102.97 Aligned_cols=92 Identities=7% Similarity=0.080 Sum_probs=76.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|||.||++|||+ |....|.|.++.++|.+. .+.+..|+ .|...+
T Consensus 35 ~~~vVll~f~a~wCp~-C~~~~pvl~ela~~~~~~---~~~~a~Vd----------------------------~d~~~~ 82 (132)
T d2hfda1 35 PDGVVLLSSDPKRTPE-VSDNPVMIGELLREFPDY---TWQVAIAD----------------------------LEQSEA 82 (132)
T ss_dssp SEEEEEECSCCSCCSS-SSCCTHHHHHHHTTCTTS---CEEEEEEC----------------------------HHHHHH
T ss_pred CCcEEEEEeeCCCChh-HHHHHHHHHHHHHHccCC---cceeEEEE----------------------------ecCCHH
Confidence 4578999999999998 999999999999988754 45544444 445578
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
+++.|+|...|+ ++++ ++|+.+..+.|..+.+++.+.|.++++.
T Consensus 83 la~~~~V~~~PT--------------~~~~-~~G~~v~~~~G~~~~~~l~~~i~~ll~~ 126 (132)
T d2hfda1 83 IGDRFGVFRFPA--------------TLVF-TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_dssp HHHHHTCCSCCE--------------EEEE-ETTEEEEEECCCSCHHHHHHHHHHHHSC
T ss_pred HHHhhccCccee--------------EEEE-EcCcEeeeecCCCCHHHHHHHHHHHhCc
Confidence 899999999996 5555 8999999999999999999999888764
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.20 E-value=1.5e-11 Score=96.13 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=65.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |....|.|.++.+++. ++.++.|++|. ...
T Consensus 25 ~~k~vvv~F~a~wC~~-C~~~~p~~~~~~~~~~-----~~~~~~vd~d~----------------------------~~~ 70 (113)
T d1ti3a_ 25 SQKLIVVDFTASWCPP-CKMIAPIFAELAKKFP-----NVTFLKVDVDE----------------------------LKA 70 (113)
T ss_dssp SSSEEEEEEECSSCHH-HHHHHHHHHHHHHHCS-----SEEEEEEETTT----------------------------CHH
T ss_pred CCCEEEEEEEcCcccc-chhhhhhhhhhhccCC-----CceEEeeeeec----------------------------ccc
Confidence 4799999999999998 9999999999988774 45566666542 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++++|+|...|+ ++++ ++|+.+.++.| .+.+++.+.|.+.
T Consensus 71 l~~~~~I~~~Pt--------------~~~~-k~G~~v~~~~G-~~~~~l~~~i~k~ 110 (113)
T d1ti3a_ 71 VAEEWNVEAMPT--------------FIFL-KDGKLVDKTVG-ADKDGLPTLVAKH 110 (113)
T ss_dssp HHHHHHCSSTTE--------------EEEE-ETTEEEEEEEC-CCTTHHHHHHHHH
T ss_pred ccccCeecccce--------------EEEE-ECCEEEEEEcC-CCHHHHHHHHHHH
Confidence 678899998885 4444 69999999877 4666666666554
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.18 E-value=2.3e-11 Score=95.14 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+++|+||++||++ |....|.+.++.+++. ++.++.|++|.+ ...
T Consensus 24 ~~k~vvv~f~a~wC~~-C~~~~p~~~~l~~~~~-----~v~~~~vd~~~~---------------------------~~~ 70 (112)
T d1f9ma_ 24 GDKPVVLDMFTQWCGP-CKAMAPKYEKLAEEYL-----DVIFLKLDCNQE---------------------------NKT 70 (112)
T ss_dssp TTSCEEEEEECTTCHH-HHHHHHHHHHHHHHCT-----TSEEEEEECSST---------------------------THH
T ss_pred CCCEEEEEEEcCCCcc-hHHHHHHHhhhccccc-----cceeeccccccc---------------------------chh
Confidence 4589999999999998 9999999999999885 345566665421 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|+|...|+ ++++ ++|+++.++.|. +++++.+.|+++
T Consensus 71 l~~~~~V~~~Pt--------------~~~~-k~G~~v~~~~G~-~~~~l~e~i~~~ 110 (112)
T d1f9ma_ 71 LAKELGIRVVPT--------------FKIL-KENSVVGEVTGA-KYDKLLEAIQAA 110 (112)
T ss_dssp HHHHHCCSSSSE--------------EEEE-ETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred hHhheeeccCCE--------------EEEE-ECCEEEEEEeCC-CHHHHHHHHHHc
Confidence 678899999986 5555 899999998774 555555555443
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.17 E-value=1.8e-11 Score=90.63 Aligned_cols=83 Identities=19% Similarity=0.365 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+|+.|++||++||++ |+...|.+.++.+++.+ .+.++.+..|.+ .++
T Consensus 2 ~kv~v~~F~a~wC~~-C~~~~p~~~~~~~~~~~----~~~~~~~~~d~~----------------------------~~l 48 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPH-CPAAKRVVEEVANEMPD----AVEVEYINVMEN----------------------------PQK 48 (85)
T ss_dssp CCEEEEEEECCCSSC-CCTHHHHHHHHHHHCSS----SEEEEEEESSSS----------------------------CCT
T ss_pred CceEEEEEECCCCcC-hHhhhhhcccccccccc----cccccccccccc----------------------------ccc
Confidence 689999999999998 99999999999888754 366666665432 123
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+++|+|...|+ ++++++|++ .|..+.+++.+.|++.
T Consensus 49 a~~~~V~~~Pt---------------~~i~~~g~~----~G~~~~~~l~~~i~~~ 84 (85)
T d1fo5a_ 49 AMEYGIMAVPT---------------IVINGDVEF----IGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTSTTTCCSSE---------------EEETTEEEC----CSSSSSHHHHHHHHHH
T ss_pred cccCCceEeeE---------------EEEECCcEE----ECCCCHHHHHHHHHhc
Confidence 67899999884 678888864 4667777777777664
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.10 E-value=1e-10 Score=89.70 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=62.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |....|.+.++.+++.+ +.++.+++|. ...
T Consensus 17 ~~~~vvv~F~a~wC~~-C~~~~~~~~~l~~~~~~-----~~~~~vd~d~----------------------------~~~ 62 (103)
T d1syra_ 17 QNELVIVDFFAEWCGP-CKRIAPFYEECSKTYTK-----MVFIKVDVDE----------------------------VSE 62 (103)
T ss_dssp HCSEEEEEEECTTCHH-HHHHHHHHHHHHHHCTT-----SEEEEEETTT----------------------------THH
T ss_pred CCCcEEEEEeCCcccC-cccccccchhhhhcccc-----eEEEeecccc----------------------------Ccc
Confidence 4689999999999998 99999999999998853 3455566542 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
++++|+|...|+ +++-++|+.+.++.|. +.+++.+.|
T Consensus 63 ~~~~~~V~~~Pt---------------~i~~k~G~~v~~~~G~-~~~~l~~~i 99 (103)
T d1syra_ 63 VTEKENITSMPT---------------FKVYKNGSSVDTLLGA-NDSALKQLI 99 (103)
T ss_dssp HHHHTTCCSSSE---------------EEEEETTEEEEEEESC-CHHHHHHHH
T ss_pred eeeeeeeecceE---------------EEEEECCEEEEEEeCc-CHHHHHHHH
Confidence 678899999985 5555799999998773 555444433
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.09 E-value=1.7e-13 Score=114.82 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=47.2
Q ss_pred eccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 175 TEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 175 sLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
.+.++++++++|+||+||||+ |+.++|.|.++++++. ++.++.|++| ++++.+.+|..+.+..+
T Consensus 48 ~l~~~~~~~~~l~~~~tWC~~-C~~~~P~l~~l~~~~~-----~~~~~~i~~d---~~~~~~~~~~~~~~~~~ 111 (166)
T d1z6na1 48 RLQRIERRYRLLVAGEMWCPD-CQINLAALDFAQRLQP-----NIELAIISKG---RAEDDLRQRLALERIAI 111 (166)
T ss_dssp HHHTCCSCEEEEEECCTTCHH-HHHHHHHHHHHHHHCT-----TEEEEEECHH---HHHHHTTTTTTCSSCCS
T ss_pred HHHHhcCCeEEEEEEeCcCcc-HHHHHHHHHHHHHHCC-----CCcEEEEECc---cCHHHHHHHHHhccccc
Confidence 467788999999999999999 9999999999998875 3445556654 33455555555444443
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.05 E-value=1.2e-10 Score=91.07 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=67.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+...|.|.++..+++. .+. ++.+|.. ++ .+....
T Consensus 25 ~~~~~~v~f~~~~C~~-C~~~~p~l~~~~~~~~~----~v~--~v~~~~~-~~---------------------~~~~~~ 75 (115)
T d1zmaa1 25 KKETATFFIGRKTCPY-CRKFAGTLSGVVAETKA----HIY--FINSEEP-SQ---------------------LNDLQA 75 (115)
T ss_dssp TTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHCC----CCE--EEETTCG-GG---------------------HHHHHH
T ss_pred cCCCEEEEEcCCCCcc-HHHHHHHHHHHHHHhhh----hhh--hheeecc-cc---------------------cccccc
Confidence 4789999999999998 99999999999888753 344 4455421 11 334456
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
++++|+|..+|+ ++++ ++|+++.++.|..+.+++.+.|
T Consensus 76 ~~~~~~V~~~PT--------------li~~-~~gk~~~~~~G~~~~~el~~fl 113 (115)
T d1zmaa1 76 FRSRYGIPTVPG--------------FVHI-TDGQINVRCDSSMSAQEIKDFA 113 (115)
T ss_dssp HHHHHTCCSSCE--------------EEEE-ETTEEEEECCTTCCHHHHHHHH
T ss_pred cccccccccccE--------------EEEE-ECCEEEEEEcCCCCHHHHHHHH
Confidence 788888988886 5555 6999999999998887776654
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3e-11 Score=95.66 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=60.5
Q ss_pred ccccCCCeEEEEEecC-------CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 176 EKDFLGKWTVIYFGFT-------HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 176 Lsd~kGK~vLL~Fwat-------wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
+.+.+||+|+|+|||+ ||++ |+.+.|.+.++.+++.+ ++.++.|++|. .++
T Consensus 16 l~~~~gk~v~v~F~a~~~~~g~sWC~p-Ck~~~P~~~~l~~~~~~----~~~~~~vdv~~---~~~-------------- 73 (119)
T d1woua_ 16 VEQHNGKTIFAYFTGSKDAGGKSWCPD-CVQAEPVVREGLKHISE----GCVFIYCQVGE---KPY-------------- 73 (119)
T ss_dssp HHTTTTSEEEEEEECCBCTTCCBSCHH-HHHHHHHHHHHGGGCCT----TEEEEEEECCC---HHH--------------
T ss_pred HHHcCCCEEEEEEEecCCCCCCCCChh-HHHHHHHHHHHHHhcCC----ceEEEEEECCC---Ccc--------------
Confidence 4566899999999996 9998 99999999999887764 48888888762 111
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV 296 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv 296 (321)
+ .|....+.++|+|..+|+ +++++..+++.
T Consensus 74 -~---~d~~~~l~~~~~V~~iPT--------------~i~~~~g~~l~ 103 (119)
T d1woua_ 74 -W---KDPNNDFRKNLKVTAVPT--------------LLKYGTPQKLV 103 (119)
T ss_dssp -H---HCTTCHHHHHHCCCSSSE--------------EEETTSSCEEE
T ss_pred -c---chhhhhHHHhCCeEEEEE--------------EEEEECCeEEe
Confidence 1 233355788899999996 66666555554
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.03 E-value=6.5e-11 Score=87.80 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=61.8
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHH
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARA 263 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ 263 (321)
.|..||++||++ |+...|.++++.++|.+ ++.++.|++|.+ .+++++
T Consensus 4 ~v~~F~a~wC~~-C~~~~p~~~~l~~~~~~----~v~~~~vd~d~~----------------------------~~l~~~ 50 (85)
T d1nhoa_ 4 NIEVFTSPTCPY-CPMAIEVVDEAKKEFGD----KIDVEKIDIMVD----------------------------REKAIE 50 (85)
T ss_dssp CEEEESCSSSCC-STTHHHHHHHHHHHHCS----SCCEEEECTTTC----------------------------GGGGGG
T ss_pred EEEEEECCCCcc-hHHHHHHHhhhcccccc----cccccccccccc----------------------------hhhHHh
Confidence 456699999998 99999999999999864 366666665532 235788
Q ss_pred cCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 264 YRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 264 ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
|||.+.|+ +++|.+|+ +.|..+.+++.+.|.+.|+
T Consensus 51 ~~V~~~Pt---------------~~~~~~~~----~~G~~~~~~l~~~i~~~l~ 85 (85)
T d1nhoa_ 51 YGLMAVPA---------------IAINGVVR----FVGAPSREELFEAINDEME 85 (85)
T ss_dssp TCSSCSSE---------------EEETTTEE----EECSSCCHHHHHHHHHHCC
T ss_pred cCceEeCE---------------EEECCcEE----EEcCCCHHHHHHHHHHhhC
Confidence 99999995 56676653 3367788888888887653
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.2e-10 Score=91.86 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||+||++||++ |....|.|.++.++|+++ +.++-|++|.. .+
T Consensus 21 ~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~~~~----v~~~~VDvd~~----------------------------~~ 67 (137)
T d1qgva_ 21 EDRVVVIRFGHDWDPT-CMKMDEVLYSIAEKVKNF----AVIYLVDITEV----------------------------PD 67 (137)
T ss_dssp SSSEEEEEEECTTSHH-HHHHHHHHHHHHHHHTTT----EEEEEEETTTC----------------------------CT
T ss_pred CCCEEEEEEECCCCcc-chhcChHHHHHHHHhhcc----ceEEEeecccc----------------------------ch
Confidence 4789999999999998 999999999999999753 77777777643 13
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC----------CChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN----------NDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~----------~~~~~l~~~l~~~L~~ 318 (321)
+++.|+|...|+ ++ +-++|+.+....+. .+.+++.+.++.+.+.
T Consensus 68 la~~~~I~~~PT--------------~~-~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~ 121 (137)
T d1qgva_ 68 FNKMYELYDPCT--------------VM-FFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG 121 (137)
T ss_dssp TTTSSCSCSSCE--------------EE-EEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhcCeeeEEE--------------EE-EEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHH
Confidence 577899998885 44 44678777653332 2445556555555443
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.8e-09 Score=86.32 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=70.9
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-++|++||+|++.||++ |...-... .++.+.+.+ +++++.|+.|
T Consensus 38 Ak~~~K~llV~~~~~~C~~-C~~m~~~v~~d~~V~~~l~~----~fV~~~v~~~-------------------------- 86 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFA-CQCLNRDVWSNEAVKNIIRE----HFIFWQVYHD-------------------------- 86 (147)
T ss_dssp HHHHTCEEEEEEECSCTTT-HHHHHHHTTTCHHHHHHHHH----TEEEEEEESS--------------------------
T ss_pred HHHcCCcEEEEEecCCCCc-hHHHHHhccCCHHHHHHHhh----heeEeeeccc--------------------------
Confidence 3446899999999999998 98765433 344444443 3666666643
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.++...+++.|++...|+ +++||| +|+++..+ +..+++++.+.|.+.|++..
T Consensus 87 ~~e~~~~~~~y~v~~~Pt--------------i~~idp~~ge~v~~~-~~~~~~~fl~~L~~fl~~~~ 139 (147)
T d2dlxa1 87 SEEGQRYIQFYKLGDFPY--------------VSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLGEHG 139 (147)
T ss_dssp SHHHHHHHHHHTCCSSSE--------------EEEECTTTCCCCEEE-SSCCHHHHHHHHHHHHHHTC
T ss_pred chhhhhhhhheecCceeE--------------EEEEeCCCCeEeccc-CCCCHHHHHHHHHHHHhhCC
Confidence 223455678888888887 999998 58888766 55789999999999887653
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.89 E-value=4.2e-09 Score=79.69 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=62.1
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.+++|.+.++.|+++|||+ |+...|.++++..++. ++.+..|+.|.
T Consensus 11 k~l~~~~~i~~F~s~~C~~-C~~~~p~~~~~a~~~~-----~i~~~~vd~~~---------------------------- 56 (96)
T d1hyua4 11 RDIDGDFEFETYYSLSCHN-CPDVVQALNLMAVLNP-----RIKHTAIDGGT---------------------------- 56 (96)
T ss_dssp HHCCSCEEEEEEECTTCSS-HHHHHHHHHHHHHHCT-----TEEEEEEETTT----------------------------
T ss_pred HhcCCCeEEEEEECCCCcc-hHHHHHHHHHHHHhCC-----ceEEEEEeccc----------------------------
Confidence 3567888999999999998 9999999999876543 57766666542
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
..+++..|+|...|+ + ++ +|+.++ .|..+.+++.+.|
T Consensus 57 ~~~l~~~~~I~~vPt--------------~-~~--ng~~~~--~G~~~~~~l~~~l 93 (96)
T d1hyua4 57 FQNEITERNVMGVPA--------------V-FV--NGKEFG--QGRMTLTEIVAKV 93 (96)
T ss_dssp CHHHHHHTTCCSSSE--------------E-EE--TTEEEE--ESCCCHHHHHHHH
T ss_pred chHHHhhcccccccE--------------E-EE--CCEEEE--ecCCCHHHHHHHH
Confidence 145678899999986 4 44 788764 3777777766654
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=3.8e-09 Score=82.81 Aligned_cols=89 Identities=11% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++.+||.||++||++ |....|.+.++...+.+. ++.+..|++|. ...
T Consensus 26 ~~~~~lV~fya~wC~~-C~~~~~~~~~la~~~~~~---~v~~~~vd~~~----------------------------~~~ 73 (119)
T d2b5ea4 26 SHDLVLAEFFAPWCGH-CKNMAPEYVKAAETLVEK---NITLAQIDCTE----------------------------NQD 73 (119)
T ss_dssp TCSEEEEEEECTTCHH-HHHHHHHHHHHHHHTTTT---TCEEEEEETTT----------------------------CHH
T ss_pred cCCeEEEEEECCccCc-ccccchhhhhhhhhhccc---ceeeeeeeccc----------------------------hHH
Confidence 4689999999999998 999999999999998754 46666666542 145
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE--EEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV--KFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~~~~~~~~~~~l~~~l~~~ 315 (321)
+..+|+|...|+ ++++ ++|+.. ..|.|..+.+.+.+.|.+.
T Consensus 74 l~~~~~v~~~Pt--------------i~~f-~~g~~~~~~~y~g~~~~~~l~~fi~k~ 116 (119)
T d2b5ea4 74 LCMEHNIPGFPS--------------LKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQ 116 (119)
T ss_dssp HHHHTTCCSSSE--------------EEEE-ETTCTTCEEECCSCCSHHHHHHHHHHH
T ss_pred HHHHhccccCCe--------------EEEE-ECCEEeeeEEecCCCCHHHHHHHHHHh
Confidence 688899998886 5555 566443 3466778887777776654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=8.4e-10 Score=88.33 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=64.7
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+..+.-.||+|||+||++||++ |+.+.+.+.+..+..+.. .+++.|.|..|.+.+.
T Consensus 18 l~~A~~~~Kpvlv~F~a~wC~~-C~~~~~~~~~~~~~~~~~--~~fv~v~vd~~~~~~~--------------------- 73 (135)
T d1sena_ 18 KKEAAASGLPLMVIIHKSWCGA-CKALKPKFAESTEISELS--HNFVMVNLEDEEEPKD--------------------- 73 (135)
T ss_dssp HHHHHHHTCCEEEEEECTTCHH-HHHHHHHHHTCHHHHHHH--TTSEEEEEEGGGSCSC---------------------
T ss_pred HHHHHHcCCcEEEEEEecCCCC-ceecchhhhhhHHHHHhc--CCcEEEeCCCCcCHHH---------------------
Confidence 3344457999999999999998 999999998775544432 3555554443321100
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC----------CCChhHHHHHHHHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK----------NNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~----------~~~~~~l~~~l~~~L~~~ 319 (321)
. ...+...+.|+ ++++|++|+++..+.+ ..+.+.+.+.++++++++
T Consensus 74 ~------~~~~~~~~~Pt--------------~~~~d~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 129 (135)
T d1sena_ 74 E------DFSPDGGYIPR--------------ILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 129 (135)
T ss_dssp G------GGCTTCSCSSE--------------EEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred H------HHHhhccccee--------------EEEECCCCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHh
Confidence 0 00111222344 8999999998865433 345577777777777765
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=6.1e-10 Score=87.27 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=66.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|.+||.||++||++ |+...|.+.++.+++..+ +..+.++-|++|.. ..
T Consensus 23 ~~k~vlV~Fya~wC~~-C~~~~p~~~~~~~~~~~~-~~~v~~~~vd~~~~----------------------------~~ 72 (120)
T d1meka_ 23 AHKYLLVEFYAPWCGH-CKALAPEYAKAAGKLKAE-GSEIRLAKVDATEE----------------------------SD 72 (120)
T ss_dssp HCSEEEEEEECSSCST-TSTTHHHHHHHHHTTTTT-CCCCBCEEEETTTC----------------------------CS
T ss_pred cCCcEEEEEECCCcCC-ccccchhhhhhccccccc-ccceeeeccccccc----------------------------hh
Confidence 4799999999999998 999999999999999765 34566666665432 12
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE--EEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF--VKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I--v~~~~~~~~~~~l~~~l~~~ 315 (321)
+..+|+|...|+ ++++ ++|+. ...+.|..+.+++.+.|++.
T Consensus 73 l~~~~~i~~~Pt--------------~~~~-~~G~~~~~~~~~g~~~~~~l~~fi~~~ 115 (120)
T d1meka_ 73 LAQQYGVRGYPT--------------IKFF-RNGDTASPKEYTAGREADDIVNWLKKR 115 (120)
T ss_dssp SHHHHTCCSSSE--------------EEEE-ESSCSSSCEECCCCSSHHHHHHHHHTT
T ss_pred HHHHhCCccCCe--------------EEEE-ECCeEeeeEEecCCCCHHHHHHHHHHh
Confidence 466789988886 5555 45533 34566778887777776653
|
| >d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.69 E-value=8.6e-08 Score=80.43 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=86.4
Q ss_pred Ceeeccc-cCCCeEEEEEecCCCCCCcHH-HHHHHHHHHHHHh-hhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc-
Q 020776 172 KNVTEKD-FLGKWTVIYFGFTHCPDICPD-ELQKLAAAVDKIK-ENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL- 247 (321)
Q Consensus 172 ~~vsLsd-~kGK~vLL~FwatwCp~vC~~-elp~L~~l~~~~~-~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~- 247 (321)
+.+++++ |+||.|||++..---.+.|.. .+|.+.+-++++. ++ |.+ .++.||+ +++-.+++|.+.++.+.
T Consensus 32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~-gvd-~I~~iSv----nD~fv~~aW~~~~~~~~I 105 (179)
T d1xiya1 32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN-NFD-DIYCITN----NDIYVLKSWFKSMDIKKI 105 (179)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS-CCS-EEEEEES----SCHHHHHHHHHHTTCCSS
T ss_pred eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhc-CCc-eEEEEec----CCHHHHHHHHhhcCcceE
Confidence 3567777 599999998886656557976 6999999999994 44 554 4566786 46899999999998765
Q ss_pred eeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 248 IGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 248 ~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
.++ .|...+++++||+...... ..+.....+..+||| ||.|.+.+
T Consensus 106 ~~l---sD~~g~f~k~lg~~~d~~~---~g~G~Rs~R~a~iid-dg~I~~~~ 150 (179)
T d1xiya1 106 KYI---SDGNSSFTDSMNMLVDKSN---FFMGMRPWRFVAIVE-NNILVKMF 150 (179)
T ss_dssp EEE---ECTTSHHHHHTTCEEECGG---GTCCEEECCEEEEEE-TTEEEEEE
T ss_pred EEe---eCCchHHHHhhhccccccc---CCCeeEEeeEEEEEE-CCEEEEEE
Confidence 556 7888999999998764332 113344567789999 89998875
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=2.7e-08 Score=79.89 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=68.5
Q ss_pred EEEcCCCCeeeccc-cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 165 KLINHDGKNVTEKD-FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 165 ~l~d~~G~~vsLsd-~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
.+..+.|+++.-.- -.++.|||.||++||++ |....|.+.++.+.|++. +..+.++ .+|..
T Consensus 13 ~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~-C~~~~p~~~~la~~~~~~-~~~v~~~--~~d~~-------------- 74 (140)
T d2b5ea1 13 SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGH-CKRLAPTYQELADTYANA-TSDVLIA--KLDHT-------------- 74 (140)
T ss_dssp SEEEECTTTHHHHHHCTTCCEEEEEECTTCHH-HHHHHHHHHHHHHHHHHH-CSSCEEE--EEEGG--------------
T ss_pred CcEEecCcCHHHHHhcCCCCEEEEEEeccCcc-cchhHHHHHHHHHHHhcc-ccceEEE--eeecc--------------
Confidence 34445566554211 13689999999999998 999999999999999866 3344444 44421
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE--eCCCCChhHHHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF--FGKNNDVNSLADGIIKE 315 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~--~~~~~~~~~l~~~l~~~ 315 (321)
..+++.|+|...|+ ++++ ++|..... |.|..+.+.+.+.|.+.
T Consensus 75 --------------~~~~~~~~v~~~Pt--------------l~~f-~~g~~~~~~~y~G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 75 --------------ENDVRGVVIEGYPT--------------IVLY-PGGKKSESVVYQGSRSLDSLFDFIKEN 119 (140)
T ss_dssp --------------GCCCSSCCCSSSSE--------------EEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred --------------chhccccccccCCe--------------EEEE-ECCEEcceeEeCCCCCHHHHHHHHHHc
Confidence 01245678877775 5555 45655432 55777888887777653
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.52 E-value=3e-07 Score=72.08 Aligned_cols=89 Identities=7% Similarity=0.157 Sum_probs=61.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHH-------HHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAA-------AVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTG 252 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~-------l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~ 252 (321)
+.+.++|.||++||+. | ...|.... +.+.+++. .|.+..|+++.
T Consensus 27 ~~~~~~V~FyapwC~~-~-~~~~~~~~~~~~~~~~a~~~~~~---~v~~a~Vd~~~------------------------ 77 (124)
T d1a8ya1 27 KYEVLALLYHEPPEDD-K-ASQRQFEMEELILELAAQVLEDK---GVGFGLVDSEK------------------------ 77 (124)
T ss_dssp HCSEEEEEEECCCCSS-H-HHHHHHHHHHHHHHHHHHHTGGG---TEEEEEEETTT------------------------
T ss_pred hCCeEEEEEECCCccc-h-hhhhHHHHHHHHHHHHHHHhccC---CeEEEEEEeec------------------------
Confidence 4678999999999985 4 33343333 33333322 57766666542
Q ss_pred ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 253 SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 253 ~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++.|+|...|+ ++++. +|+.+. |.|..+.+.+.+.|.+.++
T Consensus 78 ----~~~l~~~~~I~~yPT--------------i~~f~-~g~~~~-y~G~r~~~~l~~fi~~~l~ 122 (124)
T d1a8ya1 78 ----DAAVAKKLGLTEEDS--------------IYVFK-EDEVIE-YDGEFSADTLVEFLLDVLE 122 (124)
T ss_dssp ----SHHHHHTTTCCSTTC--------------EEEEE-SSSEEE-CCSCCSHHHHHHHHHHHHS
T ss_pred ----ccchhhccccccCCc--------------EEEec-cCccEE-eeCCCCHHHHHHHHHHhcC
Confidence 245688899999997 66664 677764 5688999999999988875
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=3.6e-07 Score=71.55 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=67.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+.|.+||.||++||++ |+. |.+.++.+++.+. ..++.+.-|.++... .+...+
T Consensus 18 ~~~~~lV~Fya~wC~~-ck~--p~f~kla~~~~~~-~~~v~ia~Vd~~~~~-----------------------~~~n~~ 70 (122)
T d2c0ga2 18 RFPYSVVKFDIASPYG-EKH--EAFTAFSKSAHKA-TKDLLIATVGVKDYG-----------------------ELENKA 70 (122)
T ss_dssp TSSEEEEEEEESSCCS-HHH--HHHHHHHHHHHHH-CSSEEEEEEEECSST-----------------------TCTTHH
T ss_pred cCCcEEEEEECCCCCc-ccC--HHHHHHHHHHHHh-CCCeEEEeccccccc-----------------------cccCHH
Confidence 4689999999999998 994 8999999998765 456777777765321 223456
Q ss_pred HHHHcCce--EeecCCCCCCcccccceEEEEEcCCCeEE--EEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKMEFV--KFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~~~~~~~~~~~l~~~l~~~ 315 (321)
+++.|++. ..|+ ++++..++... ..+.+..+.+.+.+.|.+.
T Consensus 71 l~~~~~i~~~~~PT--------------i~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~ 116 (122)
T d2c0ga2 71 LGDRYKVDDKNFPS--------------IFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116 (122)
T ss_dssp HHHHTTCCTTSCCE--------------EEEESSSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCc--------------EEEEeCCcccccccccCCCCCHHHHHHHHHHh
Confidence 78888874 4675 77776554332 3356777877777777654
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=98.38 E-value=1.9e-07 Score=71.88 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~ 214 (321)
.+|++||.||++||++ |....|.+.++.+.+.+.
T Consensus 19 ~~k~vlV~fya~wC~~-Ck~~~p~~~~la~~~~~~ 52 (116)
T d2djja1 19 DTKDVLIEFYAPWCGH-CKALAPKYEELGALYAKS 52 (116)
T ss_dssp TTSCEEEEEECSSCTT-HHHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEEeccccc-ccccchHHHHHHHHHhcc
Confidence 4689999999999998 999999999999999765
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=3.9e-06 Score=72.19 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++.+|||.||++||++ |...-+.|.++..+|. .+.++-|..| .. .
T Consensus 119 ~~~~Vvvhfy~~~~~~-C~~~~~~l~~lA~~~~-----~vkF~ki~~~----------------------------~~-~ 163 (217)
T d2trcp_ 119 KVTTIVVNIYEDGVRG-CDALNSSLECLAAEYP-----MVKFCKIRAS----------------------------NT-G 163 (217)
T ss_dssp TTCEEEEEEECTTSTT-HHHHHHHHHHHHTTCT-----TSEEEEEEHH----------------------------HH-T
T ss_pred CCCeEEEEEEcCCCCC-hhhhhhhHHHHhhhcc-----cceEEEEccc----------------------------cc-h
Confidence 4679999999999998 9999999999998885 3566655532 10 1
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+...|++...| ++++-++|.++..+.+
T Consensus 164 ~~~~~~i~~lP---------------tl~~yk~G~~v~~~vg 190 (217)
T d2trcp_ 164 AGDRFSSDVLP---------------TLLVYKGGELISNFIS 190 (217)
T ss_dssp CSTTSCGGGCS---------------EEEEEETTEEEEEETT
T ss_pred hHHhCCCCCCC---------------eEEEEECCEEEEEEEC
Confidence 23457888888 4667799999998755
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.85 E-value=6e-06 Score=62.27 Aligned_cols=81 Identities=14% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
..-++|+.||..||++ |....+.|+++..+|. ..+ +.+|.+ ...+
T Consensus 14 ~~~p~i~lft~~~C~~-C~~a~~~L~~~~~~~~------~~~--v~vd~~--------------------------~~~~ 58 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPL-CDEAKEVLQPYKDRFI------LQE--VDITLP--------------------------ENST 58 (100)
T ss_dssp CCCCEEEEEECSSCHH-HHHHHHHTSTTSSSSE------EEE--EETTSS--------------------------TTHH
T ss_pred CCCCEEEEEECCCCCC-hHHHHHHHHHhhhhcc------eEE--Eecccc--------------------------cCHH
Confidence 3467899999999998 9998888888855442 333 444432 2245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+.+.|++. +| +++| +|+.+.. +..+.+++.+.|+++
T Consensus 59 l~~~y~~~-VP---------------vl~i--dg~~~~~--g~~d~~~L~~~L~~l 94 (100)
T d1wjka_ 59 WYERYKFD-IP---------------VFHL--NGQFLMM--HRVNTSKLEKQLRKL 94 (100)
T ss_dssp HHHHSSSS-CS---------------EEEE--SSSEEEE--SSCCHHHHHHHHHSS
T ss_pred HHHHhccc-CC---------------ceee--cCceEEe--CCCCHHHHHHHHHHH
Confidence 67788876 66 4566 4655533 567877777766543
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00067 Score=55.20 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=68.9
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC-CCCHH------------HHHH
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE-RDTVE------------QVRE 238 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~-~Dt~e------------~l~~ 238 (321)
..+....-..+.+|+.|....||+ |....+.++++.++. ++.++.+.+.-. .++.. ....
T Consensus 27 ~~i~~G~~~a~~tv~vF~D~~CP~-C~~~~~~l~~l~~~~------~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~ 99 (169)
T d1v58a1 27 HWLLDGKKDAPVIVYVFADPFCPY-CKQFWQQARPWVDSG------KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQ 99 (169)
T ss_dssp CCEEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHTT------SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHH
T ss_pred CCceeCCCCCCEEEEEEECCCCcc-hHHHHHHHHHHHhcc------ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHH
Confidence 344444445678999999999998 999999998876533 355555544211 12221 2222
Q ss_pred HHHHhCCCceeec---CC------hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 239 YVKEFHPKLIGLT---GS------PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 239 ~~~~~~~~~~~l~---~~------~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
+....+....... .+ -+...++++.+|+.++|+ +|+.|++|.+.. ..|..+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt--------------~i~~~~~g~~~~-~~G~~~~~~l~ 164 (169)
T d1v58a1 100 QYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPA--------------IYYMSKENTLQQ-AVGLPDQKTLN 164 (169)
T ss_dssp HHHHTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCE--------------EEEEETTTEEEE-EESSCCHHHHH
T ss_pred HHHHhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCE--------------EEEECCCCCEEE-ecCCCCHHHHH
Confidence 2222222111111 11 233456778889888886 788899998744 44666665544
Q ss_pred H
Q 020776 310 D 310 (321)
Q Consensus 310 ~ 310 (321)
+
T Consensus 165 ~ 165 (169)
T d1v58a1 165 I 165 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.0002 Score=57.60 Aligned_cols=118 Identities=10% Similarity=-0.004 Sum_probs=71.1
Q ss_pred eccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH------------H-
Q 020776 175 TEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV------------K- 241 (321)
Q Consensus 175 sLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~------------~- 241 (321)
.+..-.+|.||+.|....||+ |....+.|.++.+ . +.++.++.+.+... .+....... .
T Consensus 20 v~g~~~ak~tIv~FsD~~Cpy-C~~~~~~l~~~~~----~-~~~~~~~~~p~~~~--~~~~~~~a~~~~~~~~~~~~~~~ 91 (156)
T d1eeja1 20 VYKAPQEKHVITVFTDITCGY-CHKLHEQMADYNA----L-GITVRYLAFPRQGL--DSDAEKEMKAIWCAKDKNKAFDD 91 (156)
T ss_dssp EECCTTCCEEEEEEECTTCHH-HHHHHTTHHHHHH----T-TEEEEEEECCTTCS--SSHHHHHHHHHHTSSSHHHHHHH
T ss_pred eecCCCCCEEEEEEeCCCCHH-HHHHHHHHHHhhc----c-CceEEEEecccccc--chhhHHHHHHHHHhhhhhhhhHH
Confidence 333445789999999999998 9999999988743 2 22333333322211 111111110 0
Q ss_pred -HhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 242 -EFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 242 -~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+. .-.-.....+...++++.+||.++|+ +| + .||+++. |..+.+++.+.|.++.++
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt--------------~~-~-~nG~~v~---G~~~~e~l~~~i~~~~k~ 152 (156)
T d1eeja1 92 VMAGKSVAPASCDVDIADHYALGVQLGVSGTPA--------------VV-L-SNGTLVP---GYQPPKEMKEFLDEHQKM 152 (156)
T ss_dssp HHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSE--------------EE-C-TTSCEEE---SCCCHHHHHHHHHHHHHH
T ss_pred HHhccccchhhhcchHHHHHHHHHHcCCcCCCE--------------EE-E-eCCeEec---CCCCHHHHHHHHHHHHHH
Confidence 1111 11111223566778899999999885 33 3 4687654 778899999888887765
Q ss_pred H
Q 020776 319 Y 319 (321)
Q Consensus 319 ~ 319 (321)
-
T Consensus 153 ~ 153 (156)
T d1eeja1 153 T 153 (156)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.13 E-value=0.0019 Score=51.50 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=39.9
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.+.+.+-..++.|+.|+.-.||+ |....+.+.++..++.+. ..+.++.+..
T Consensus 16 ~~~~G~~~a~v~I~ef~d~~Cp~-C~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 66 (172)
T d1z6ma1 16 GLHIGESNAPVKMIEFINVRCPY-CRKWFEESEELLAQSVKS--GKVERIIKLF 66 (172)
T ss_dssp SEEESCTTCSEEEEEEECTTCHH-HHHHHHHHHHHHHHHHHT--TSEEEEEEEC
T ss_pred CCeecCCCCCEEEEEEECCCCHh-HHHHHHHHhhhhhhhccc--cceeeeeccc
Confidence 34466666788999999999998 999999999999999876 2455554444
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.07 E-value=0.00068 Score=54.58 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=33.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.++++|+.|+.-.||+ |...-+.+.++.+++.+. ..+....+.+
T Consensus 17 ~~~~~Ivef~d~~Cp~-C~~~~~~~~~l~~~~~~~--~~~~~~~~~~ 60 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPH-CNTFEPIIAQLKQQLPEG--AKFQKNHVSF 60 (181)
T ss_dssp CSSCEEEEEECTTCHH-HHHHHHHHHHHHHTSCTT--CEEEEEECSS
T ss_pred CCCCEEEEEECCCCcc-chhhhhhhhhHhhhcccc--cceeEEeccc
Confidence 5788999999999998 999999999998888654 2344444444
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.06 E-value=0.00037 Score=55.69 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=65.7
Q ss_pred eccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC-CCHHHHHHH------------HH
Q 020776 175 TEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER-DTVEQVREY------------VK 241 (321)
Q Consensus 175 sLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~-Dt~e~l~~~------------~~ 241 (321)
.+..-.+|.+|+.|.-..||+ |....+.+.++.+. +..++++...+.... +........ +.
T Consensus 20 i~g~~~ak~~I~~FsD~~CPy-C~~~~~~l~~l~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~ 93 (150)
T d1t3ba1 20 VYPAKNEKHVVTVFMDITCHY-CHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAE 93 (150)
T ss_dssp EECCTTCSEEEEEEECTTCHH-HHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHH
T ss_pred EECCCCCCEEEEEEECCCCHH-HHHHhHHHHHHhcc-----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHh
Confidence 334446789999999999998 99999999888642 223444433322111 111111111 11
Q ss_pred HhC-CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 242 EFH-PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 242 ~~~-~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
... ..-.......+....+++.+||.++|+ +|+ .||+++ .|..+.+++.+.|++
T Consensus 94 ~~~~~~~~~~~~~i~~~~~la~~lGv~GTPt--------------~~~--~nG~~i---~G~~~~~~l~~~l~~ 148 (150)
T d1t3ba1 94 KGNLPKEVKTPNIVKKHYELGIQFGVRGTPS--------------IVT--STGELI---GGYLKPADLLRALEE 148 (150)
T ss_dssp TTCCCSSCCCSSHHHHHHHHHHHHTCCSSCE--------------EEC--TTSCCC---CSCCCHHHHHHHHHH
T ss_pred hhccccchhhhhHHHHHHHHHHhcCcCCCCE--------------EEE--cCCcEe---cCCCCHHHHHHHHHh
Confidence 111 111111112455677889999999985 443 467654 477788877776654
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.97 E-value=0.0014 Score=50.17 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++.+||.|++.||.. |.. |..+++.+++.+. .++..--|.+..- +.+....
T Consensus 20 ~~~~~lV~F~~~wc~~-~~~--~~~~~la~~~~~~--~~~~~~~V~~~~v-----------------------d~~~n~~ 71 (122)
T d1g7ea_ 20 KSKFVLVKFDTQYPYG-EKQ--DEFKRLAENSASS--DDLLVAEVGISDY-----------------------GDKLNME 71 (122)
T ss_dssp GSSEEEEEEECSSCCT-TTT--HHHHHHHHHGGGC--SSEEEEEEESCCT-----------------------TSCHHHH
T ss_pred hCCeEEEEEecCCcCc-ccC--HHHHHHHHHHHHH--HHHhhhccceeec-----------------------cccccHH
Confidence 4789999999999976 753 6788888888765 2332222333210 1334455
Q ss_pred HHHHcC--ceEeecCCCCCCcccccceEEEEEcCCCeE--EEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYR--VYYMKTAEEDSDYLVDHSIVMYLMSPKMEF--VKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~yg--v~~~p~~~~~~~y~v~~~~~~~LID~dG~I--v~~~~~~~~~~~l~~~l~~ 314 (321)
+...|+ |...|+ ++++ ++|.. ...|.|..+.+.+.+.|++
T Consensus 72 l~~~~~~~I~~yPT--------------i~~f-~~G~~~~~~~y~G~rt~~~l~~fi~~ 115 (122)
T d1g7ea_ 72 LSEKYKLDKESYPV--------------FYLF-RDGDFENPVPYSGAVKVGAIQRWLKG 115 (122)
T ss_dssp HHHHHTCSSSSCEE--------------EEEE-ESSCCCCCEEEESCCCHHHHHHHHHT
T ss_pred HHHhhcccccCCCe--------------EEEE-ecCcccCceecCCCCCHHHHHHHHHh
Confidence 666655 556675 4444 45542 2345678888887777654
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0021 Score=52.03 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=31.3
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
..++++|+.|+.-.||+ |...-+.|..+.+..+.. ...+.++.+.+
T Consensus 16 ~~~~~~VvEffdy~Cp~-C~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 61 (188)
T d1fvka_ 16 VAGAPQVLEFFSFFCPH-CYQFEEVLHISDNVKKKL-PEGVKMTKYHV 61 (188)
T ss_dssp CTTCCSEEEEECTTCHH-HHHHHHTTCHHHHHHTTS-CTTCCEEEEEC
T ss_pred CCCCCEEEEEECCCChh-hHHHHHHHHHHHHHhhcc-CCceEEEEEec
Confidence 45788999999999998 999888876665544332 22344444443
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.40 E-value=0.6 Score=32.31 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=24.9
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEE
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 224 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~I 224 (321)
|..+++.|+. |.......++...++ |.+..+.-|
T Consensus 4 IkVlg~gC~~-C~~~~~~v~~a~~e~----gi~a~v~kv 37 (77)
T d1iloa_ 4 IQIYGTGCAN-CQMLEKNAREAVKEL----GIDAEFEKI 37 (77)
T ss_dssp EEEECSSSST-THHHHHHHHHHHHHT----TCCEEEEEE
T ss_pred EEEeCCCCcc-HHHHHHHHHHHHHHc----CCceEEEEe
Confidence 3345899998 999888888877665 556666544
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.10 E-value=0.81 Score=34.24 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=37.1
Q ss_pred cccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 177 KDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 177 sd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++..+.|+.|-. ..|+. |.....-|+++.. +.+ .+.+.....| .+
T Consensus 18 ~~l~~pV~l~~~~~~~~~~~-~~e~~~ll~ela~-lSd----ki~~~~~~~~--------------------------~~ 65 (119)
T d1a8la1 18 SKMVNPVKLIVFVRKDHCQY-CDQLKQLVQELSE-LTD----KLSYEIVDFD--------------------------TP 65 (119)
T ss_dssp GGCCSCEEEEEEECSSSCTT-HHHHHHHHHHHHT-TCT----TEEEEEEETT--------------------------SH
T ss_pred HhCCCCEEEEEEecCCCchh-HHHHHHHHHHHHh-hCC----CeEEEEeccC--------------------------cc
Confidence 44555566666654 46987 8875555555532 222 3544333322 34
Q ss_pred HHHHHHHHcCceEeec
Q 020776 256 EIRNIARAYRVYYMKT 271 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~ 271 (321)
...++++.|++...|+
T Consensus 66 e~~~~~~~~~ver~Ps 81 (119)
T d1a8la1 66 EGKELAKRYRIDRAPA 81 (119)
T ss_dssp HHHHHHHHTTCCSSSE
T ss_pred hhhhHHHhhccccCce
Confidence 5567889999988885
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=89.35 E-value=0.28 Score=33.10 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=15.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|..+|||+ |...-..|++
T Consensus 3 v~iYt~~~C~~-C~~ak~~L~~ 23 (74)
T d1r7ha_ 3 ITLYTKPACVQ-CTATKKALDR 23 (74)
T ss_dssp EEEEECTTCHH-HHHHHHHHHH
T ss_pred EEEEeCCCChh-HHHHHHHHHH
Confidence 56778999998 9886665543
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.12 E-value=4 Score=33.59 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=29.9
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
+.||=.|-+.||.. |+..-..|.++.+. .+|..|++.+|
T Consensus 6 ~aVVElFTSqgCss-CPpAd~~L~~L~~~------~~Vi~La~HVd 44 (225)
T d2axoa1 6 KGVVELFTSQGCAS-CPPADEALRKMIQK------GDVVGLSYHVD 44 (225)
T ss_dssp CCEEEEEECTTCTT-CHHHHHHHHHHHHH------TSSEEEEEECS
T ss_pred CcEEEEeeCCCCCC-CHHHHHHHHHhhCC------CCEEEEEeccc
Confidence 34555788999998 99988888887542 26888888887
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.84 E-value=0.51 Score=34.26 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=16.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|..+|||+ |...-..|.++
T Consensus 14 Vviysk~~Cp~-C~~ak~ll~~~ 35 (105)
T d1ktea_ 14 VVVFIKPTCPF-CRKTQELLSQL 35 (105)
T ss_dssp EEEEECSSCHH-HHHHHHHHHHS
T ss_pred EEEEECCCCch-HHHHHHHHHHh
Confidence 45678899998 98866655543
|