Citrus Sinensis ID: 020796
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | ||||||
| 255581890 | 321 | conserved hypothetical protein [Ricinus | 1.0 | 1.0 | 0.831 | 1e-157 | |
| 224142297 | 321 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.834 | 1e-157 | |
| 363808210 | 354 | uncharacterized protein LOC100809430 [Gl | 1.0 | 0.906 | 0.800 | 1e-150 | |
| 356547785 | 366 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.871 | 0.799 | 1e-149 | |
| 357479849 | 467 | hypothetical protein MTR_4g129200 [Medic | 0.981 | 0.674 | 0.800 | 1e-149 | |
| 357479845 | 354 | hypothetical protein MTR_4g129180 [Medic | 1.0 | 0.906 | 0.778 | 1e-146 | |
| 449464334 | 398 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.798 | 0.770 | 1e-145 | |
| 297793281 | 347 | hypothetical protein ARALYDRAFT_495867 [ | 0.962 | 0.890 | 0.799 | 1e-144 | |
| 30696915 | 352 | alpha-rhamnosidase-like protein [Arabido | 0.962 | 0.877 | 0.789 | 1e-143 | |
| 145334835 | 358 | alpha-rhamnosidase-like protein [Arabido | 0.962 | 0.863 | 0.789 | 1e-143 |
| >gi|255581890|ref|XP_002531744.1| conserved hypothetical protein [Ricinus communis] gi|223528614|gb|EEF30633.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/321 (83%), Positives = 291/321 (90%)
Query: 1 MKKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQ 60
M+KDC I+G + EEFTFP SAPF +CHASTIVEVDK HFLVAYFGG+ EGAPDVKIWLQ
Sbjct: 1 MRKDCYIRGPLKEEFTFPEKSAPFDNCHASTIVEVDKDHFLVAYFGGTLEGAPDVKIWLQ 60
Query: 61 TFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVT 120
T+KDG WQSP+I DE+P VPMWNPVLFKL S LLLFYKIGQEVQKWSGCMKRSY+KGVT
Sbjct: 61 TYKDGFWQSPVIVDEQPEVPMWNPVLFKLSSEELLLFYKIGQEVQKWSGCMKRSYDKGVT 120
Query: 121 WSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180
W+ REQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWG+WMEVT DAGRSW+KYGPIY
Sbjct: 121 WTAREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGAWMEVTADAGRSWKKYGPIY 180
Query: 181 IPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240
I N SLSVIQPV F TA TLRVL+RSF+GIG++CMSES DGGL W YAK T+L NPNSG
Sbjct: 181 IVNTSLSVIQPVLFQTAKGTLRVLLRSFDGIGKICMSESLDGGLNWGYAKLTELPNPNSG 240
Query: 241 IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG 300
IDGVKLKDGRLLLAYNT+SRGVLKVA+S+DDGDSW+D +TLEENL MEFSYPAVIQASDG
Sbjct: 241 IDGVKLKDGRLLLAYNTISRGVLKVAISEDDGDSWYDVITLEENLEMEFSYPAVIQASDG 300
Query: 301 SVHITYTYNRTQIKHVVLLPN 321
SVHI+YTYNRTQIK+VVL PN
Sbjct: 301 SVHISYTYNRTQIKYVVLQPN 321
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142297|ref|XP_002324495.1| predicted protein [Populus trichocarpa] gi|222865929|gb|EEF03060.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 268/321 (83%), Positives = 291/321 (90%)
Query: 1 MKKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQ 60
M KDC LV EEFTFPANS+PF SCHASTIVEVDK HFLVAYFGG+ EGAPDVKIW+Q
Sbjct: 1 MSKDCHNWQLVKEEFTFPANSSPFNSCHASTIVEVDKNHFLVAYFGGTKEGAPDVKIWIQ 60
Query: 61 TFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVT 120
T+KDG WQSPII D++ +VPMWNPVLFKL S LLLFYK+GQEVQKWSGCMKRSY+KGVT
Sbjct: 61 TYKDGYWQSPIIVDDQLDVPMWNPVLFKLASEELLLFYKVGQEVQKWSGCMKRSYDKGVT 120
Query: 121 WSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180
WS+REQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWG+WMEVT DAGRSWRK+GPIY
Sbjct: 121 WSKREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGAWMEVTADAGRSWRKHGPIY 180
Query: 181 IPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240
+ N SLSVIQPVPF TA+ T RVL+RSF+ IGRVCMSES DGG+TW YAKPT+L NPNSG
Sbjct: 181 VENTSLSVIQPVPFQTADGTFRVLLRSFDDIGRVCMSESYDGGVTWGYAKPTELPNPNSG 240
Query: 241 IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG 300
IDGVKLKDG +LLAYNT+SRGVLKVA+SKDDGDSWHD +TLEE L MEFSYPAVIQASDG
Sbjct: 241 IDGVKLKDGPVLLAYNTISRGVLKVAVSKDDGDSWHDVVTLEEKLDMEFSYPAVIQASDG 300
Query: 301 SVHITYTYNRTQIKHVVLLPN 321
SVHITYTYNRTQIKHVVL P+
Sbjct: 301 SVHITYTYNRTQIKHVVLQPS 321
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363808210|ref|NP_001242743.1| uncharacterized protein LOC100809430 [Glycine max] gi|255636459|gb|ACU18568.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/321 (80%), Positives = 282/321 (87%)
Query: 1 MKKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQ 60
M +C I+G + EEFT+ A SAPFKSCHASTIVEVDK HFLVAYFGG+ EGAPDVKIW+Q
Sbjct: 34 MASNCSIEGPLVEEFTYQAGSAPFKSCHASTIVEVDKDHFLVAYFGGTFEGAPDVKIWVQ 93
Query: 61 TFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVT 120
T+K+GRWQ+P+IADEEPNVPMWNP LFKLPS+ LLLFYKIGQEVQKWSG MKRSY+KG T
Sbjct: 94 TYKNGRWQAPVIADEEPNVPMWNPALFKLPSDELLLFYKIGQEVQKWSGFMKRSYDKGKT 153
Query: 121 WSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180
W+ REQLPPGILGP KNKPILLENG LLCGSSVESWNSWG+W+EVT D GRSW KYGPIY
Sbjct: 154 WTGREQLPPGILGPIKNKPILLENGNLLCGSSVESWNSWGAWVEVTTDFGRSWSKYGPIY 213
Query: 181 IPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240
I N+ LSVIQPVP+ TA+ LRVL+RSF+GIGRVCMSES DGG TW YAKPTQL NPNSG
Sbjct: 214 IENKPLSVIQPVPYQTADGKLRVLLRSFDGIGRVCMSESSDGGKTWGYAKPTQLPNPNSG 273
Query: 241 IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG 300
IDGVKL+DGRLLLAYNTVSR V KVALSKDDGDSW + LTLE+ MEFSYPAVIQ SDG
Sbjct: 274 IDGVKLRDGRLLLAYNTVSRSVPKVALSKDDGDSWCEVLTLEDTSGMEFSYPAVIQDSDG 333
Query: 301 SVHITYTYNRTQIKHVVLLPN 321
+HITYTYNRTQIK VVL P+
Sbjct: 334 RIHITYTYNRTQIKRVVLRPS 354
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547785|ref|XP_003542289.1| PREDICTED: uncharacterized protein LOC100779946 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/319 (79%), Positives = 278/319 (87%)
Query: 2 KKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQT 61
K +KG V EEFTFP S PF SCHASTIVEV KGHFLVAYFGGS EGAPDVKIWLQT
Sbjct: 40 KNSSYVKGPVVEEFTFPERSTPFNSCHASTIVEVGKGHFLVAYFGGSSEGAPDVKIWLQT 99
Query: 62 FKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTW 121
+K GRW+SPIIADEEPNVPMWNPVLFKLPSN LLLFYKIG +VQKWSG MKRSY+KG+TW
Sbjct: 100 YKSGRWKSPIIADEEPNVPMWNPVLFKLPSNELLLFYKIGLDVQKWSGFMKRSYDKGITW 159
Query: 122 SEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYI 181
+EREQLP GILGP KNKP+LLENG LLCGSSVESWNSWG+W EVT D G +WRKYGPIYI
Sbjct: 160 TEREQLPSGILGPIKNKPLLLENGDLLCGSSVESWNSWGAWAEVTTDFGGAWRKYGPIYI 219
Query: 182 PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGI 241
N+ VIQPVP+ TA TLRVL+RSF G+GR+ MSES DGG +W YAKPTQL NPNSGI
Sbjct: 220 ENKPHGVIQPVPYQTAKGTLRVLLRSFTGLGRIYMSESFDGGKSWGYAKPTQLPNPNSGI 279
Query: 242 DGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGS 301
DGVKLKDGRLLLAYNT+SRGVLK+ALS+DDGDSWH+ALTLE+ L MEFSYPAVIQASDG
Sbjct: 280 DGVKLKDGRLLLAYNTISRGVLKLALSEDDGDSWHEALTLEDTLGMEFSYPAVIQASDGR 339
Query: 302 VHITYTYNRTQIKHVVLLP 320
VH+TYTY RTQIKHVV+ P
Sbjct: 340 VHVTYTYKRTQIKHVVVRP 358
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479849|ref|XP_003610210.1| hypothetical protein MTR_4g129200 [Medicago truncatula] gi|355511265|gb|AES92407.1| hypothetical protein MTR_4g129200 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/316 (80%), Positives = 279/316 (88%), Gaps = 1/316 (0%)
Query: 7 IKGLVAEEFTFPANSA-PFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG 65
I+GLV EEFTFPA S+ PF SCHASTIVEV KGHFLVAYFGG+ EGAPDVKIWLQT+K+G
Sbjct: 38 IQGLVVEEFTFPAKSSVPFNSCHASTIVEVGKGHFLVAYFGGTSEGAPDVKIWLQTYKNG 97
Query: 66 RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE 125
WQ+P+I DEEPNVPMWNPVLFKLPSN LLLFYKIGQ+ QKWSG +KRSY+KG+TW+ERE
Sbjct: 98 IWQAPVIGDEEPNVPMWNPVLFKLPSNVLLLFYKIGQDFQKWSGFIKRSYDKGITWTERE 157
Query: 126 QLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNES 185
QLPPGILGP KNKPILLENG LLCGSSVESWNSWGSW EVT D G++WRKYGPIYI N
Sbjct: 158 QLPPGILGPIKNKPILLENGDLLCGSSVESWNSWGSWAEVTTDFGKTWRKYGPIYIKNNP 217
Query: 186 LSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVK 245
L VIQPVP+ TA TLRVL+RSF GIGRV MSES DGG TW YA+PTQL NPNSGIDG+K
Sbjct: 218 LGVIQPVPYQTAKGTLRVLLRSFTGIGRVYMSESFDGGKTWGYAEPTQLHNPNSGIDGIK 277
Query: 246 LKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHIT 305
LKDGRLL+AYNT+SRGVLK+ALS+DDGDSWH ALTLE+ + MEFSYPAVIQASDG VH+T
Sbjct: 278 LKDGRLLIAYNTISRGVLKLALSEDDGDSWHQALTLEDTVGMEFSYPAVIQASDGRVHVT 337
Query: 306 YTYNRTQIKHVVLLPN 321
YTYNRTQIK V+ N
Sbjct: 338 YTYNRTQIKAKVMQTN 353
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357479845|ref|XP_003610208.1| hypothetical protein MTR_4g129180 [Medicago truncatula] gi|355511263|gb|AES92405.1| hypothetical protein MTR_4g129180 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 250/321 (77%), Positives = 280/321 (87%)
Query: 1 MKKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQ 60
M+ C I G + EE TF SAPF +CHASTIVE DK HFLVAYFGG+ EGAPDVKIWLQ
Sbjct: 34 MENRCPIYGPLTEELTFLEGSAPFNNCHASTIVEFDKDHFLVAYFGGTSEGAPDVKIWLQ 93
Query: 61 TFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVT 120
T K+GRW+SP+IADE+PNVPMWNPVLFKLPS+ LLLFYKIGQEVQKWSG +KRSY+KG T
Sbjct: 94 TCKNGRWESPVIADEQPNVPMWNPVLFKLPSDELLLFYKIGQEVQKWSGFVKRSYDKGNT 153
Query: 121 WSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180
W+EREQLPPGILGP KNKPILLENG L+CGSSVESWNSWG+W+EVT D GRSW K+GPIY
Sbjct: 154 WTEREQLPPGILGPIKNKPILLENGHLICGSSVESWNSWGAWVEVTSDFGRSWSKHGPIY 213
Query: 181 IPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240
I NE LSVIQPVP+ TA+ LRVL+RSF+GIGRVC+SES DGG TW +AKPTQL NPNSG
Sbjct: 214 IENEPLSVIQPVPYQTADGKLRVLLRSFDGIGRVCISESSDGGQTWGHAKPTQLPNPNSG 273
Query: 241 IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG 300
IDGVKL+DGR+LL YNT SRG+LKVALS DDGDSW++ALTLE++ MEFSYPAVIQASDG
Sbjct: 274 IDGVKLRDGRILLVYNTTSRGILKVALSNDDGDSWYEALTLEDSSGMEFSYPAVIQASDG 333
Query: 301 SVHITYTYNRTQIKHVVLLPN 321
+HITYTY RTQIKHV L PN
Sbjct: 334 LIHITYTYKRTQIKHVTLRPN 354
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464334|ref|XP_004149884.1| PREDICTED: uncharacterized protein LOC101219119 [Cucumis sativus] gi|449507997|ref|XP_004163188.1| PREDICTED: uncharacterized protein LOC101230872 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/318 (77%), Positives = 273/318 (85%)
Query: 1 MKKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQ 60
M K + G + EEFTFPANS PF +CHASTIVEVDK H+LVAYFGG+ EGAPDVKIWLQ
Sbjct: 73 MGKGSYVDGPLQEEFTFPANSVPFNNCHASTIVEVDKDHYLVAYFGGTLEGAPDVKIWLQ 132
Query: 61 TFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVT 120
FK+G W SPI+ADEEP++PMWNPVLFKLPS+ LLLFYK+GQEVQKWSGCMKRSY+KG+T
Sbjct: 133 AFKNGSWHSPIVADEEPDIPMWNPVLFKLPSDELLLFYKVGQEVQKWSGCMKRSYDKGIT 192
Query: 121 WSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180
W+ REQLPPGILGP KNKPILLENG+LLCGSSVESWNSWG+WMEVT D+GRSWRK+GPIY
Sbjct: 193 WTAREQLPPGILGPIKNKPILLENGVLLCGSSVESWNSWGAWMEVTSDSGRSWRKFGPIY 252
Query: 181 IPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240
+ N SLSVIQPVP+ TAN LRVL+RSF GI +CMSES DGG WS+A PT L NPNSG
Sbjct: 253 MKNRSLSVIQPVPYQTANGNLRVLLRSFTGIDSICMSESNDGGHNWSFAIPTNLPNPNSG 312
Query: 241 IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG 300
IDGVKL+DGRLLL YNTVSRGVLKV LS DDGDSW D +TLE+ EFSYPAVI+ASD
Sbjct: 313 IDGVKLRDGRLLLVYNTVSRGVLKVGLSLDDGDSWQDVMTLEDEPENEFSYPAVIEASDD 372
Query: 301 SVHITYTYNRTQIKHVVL 318
S+HITYTY R QIKHVV
Sbjct: 373 SIHITYTYRRKQIKHVVF 390
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793281|ref|XP_002864525.1| hypothetical protein ARALYDRAFT_495867 [Arabidopsis lyrata subsp. lyrata] gi|297310360|gb|EFH40784.1| hypothetical protein ARALYDRAFT_495867 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/309 (79%), Positives = 270/309 (87%)
Query: 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQS 69
++ E FTFPA+SAPFKSCHASTIVEV + HFL AYFGG+ EGAPDVKIWLQ FKDG+W S
Sbjct: 8 VLLETFTFPADSAPFKSCHASTIVEVVEDHFLTAYFGGTTEGAPDVKIWLQHFKDGQWDS 67
Query: 70 PIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP 129
P+I DEEP VPMWNPVLFKLPS LLLFYKIGQEVQKWSGCMKRSY+KG TW+EREQLPP
Sbjct: 68 PVIVDEEPGVPMWNPVLFKLPSQELLLFYKIGQEVQKWSGCMKRSYDKGRTWTEREQLPP 127
Query: 130 GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVI 189
GILGP KNKPILLE+G LLCGSSVESWNSWG+WMEVT DAGRSWRK GPIYI +SLSVI
Sbjct: 128 GILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRSWRKQGPIYIQGKSLSVI 187
Query: 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDG 249
QPVP+ TA LRVL+RSF GI ++C+SES DGG WS+A PT L NPNSGIDGVKLKDG
Sbjct: 188 QPVPYQTAAGKLRVLLRSFTGIDKICISESSDGGENWSFAVPTVLPNPNSGIDGVKLKDG 247
Query: 250 RLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN 309
RL+LAYNT SRGVLKV +S DDGDSW D LTLEE+ MEFSYPAVIQA DG+VH+TYTYN
Sbjct: 248 RLVLAYNTDSRGVLKVGVSLDDGDSWTDVLTLEESPGMEFSYPAVIQAGDGNVHVTYTYN 307
Query: 310 RTQIKHVVL 318
RTQIKHVVL
Sbjct: 308 RTQIKHVVL 316
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696915|ref|NP_851204.1| alpha-rhamnosidase-like protein [Arabidopsis thaliana] gi|119360001|gb|ABL66729.1| At5g57700 [Arabidopsis thaliana] gi|332009554|gb|AED96937.1| alpha-rhamnosidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/309 (78%), Positives = 272/309 (88%)
Query: 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQS 69
++ E FTFPA+SAPFKSCHASTIVEV K HFL AYFGG+ EGAPDVKIWLQ FKDG+W S
Sbjct: 13 VLLETFTFPADSAPFKSCHASTIVEVVKDHFLAAYFGGTREGAPDVKIWLQHFKDGQWDS 72
Query: 70 PIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP 129
P+I DEEP VPM+NPVLFKLPS+ LLLFYKIGQEVQKWSGCMKRSY+KG+TW+EREQLPP
Sbjct: 73 PVIVDEEPGVPMYNPVLFKLPSHELLLFYKIGQEVQKWSGCMKRSYDKGITWTEREQLPP 132
Query: 130 GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVI 189
GILGP KNKPILLE+G LLCGSSVESWNSWG+WMEVT DAGR+WRK GPIYI +SLSVI
Sbjct: 133 GILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRTWRKKGPIYIQGKSLSVI 192
Query: 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDG 249
QPVP+ TA LR+L+RSF GI R+C+SES DGG WS+A PT L NPNSGIDGVKLKDG
Sbjct: 193 QPVPYQTAAGNLRILLRSFTGIDRICISESLDGGENWSFAVPTVLPNPNSGIDGVKLKDG 252
Query: 250 RLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN 309
RL+LAYNT SRGVLK+ +S DDGDSW D LTLEE+ ME+SYPAVIQA DG+VH+TYTYN
Sbjct: 253 RLVLAYNTDSRGVLKLGVSLDDGDSWTDILTLEESPGMEYSYPAVIQAGDGNVHVTYTYN 312
Query: 310 RTQIKHVVL 318
RTQIKHVVL
Sbjct: 313 RTQIKHVVL 321
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145334835|ref|NP_001078763.1| alpha-rhamnosidase-like protein [Arabidopsis thaliana] gi|332009556|gb|AED96939.1| alpha-rhamnosidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/309 (78%), Positives = 272/309 (88%)
Query: 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQS 69
++ E FTFPA+SAPFKSCHASTIVEV K HFL AYFGG+ EGAPDVKIWLQ FKDG+W S
Sbjct: 19 VLLETFTFPADSAPFKSCHASTIVEVVKDHFLAAYFGGTREGAPDVKIWLQHFKDGQWDS 78
Query: 70 PIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP 129
P+I DEEP VPM+NPVLFKLPS+ LLLFYKIGQEVQKWSGCMKRSY+KG+TW+EREQLPP
Sbjct: 79 PVIVDEEPGVPMYNPVLFKLPSHELLLFYKIGQEVQKWSGCMKRSYDKGITWTEREQLPP 138
Query: 130 GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVI 189
GILGP KNKPILLE+G LLCGSSVESWNSWG+WMEVT DAGR+WRK GPIYI +SLSVI
Sbjct: 139 GILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRTWRKKGPIYIQGKSLSVI 198
Query: 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDG 249
QPVP+ TA LR+L+RSF GI R+C+SES DGG WS+A PT L NPNSGIDGVKLKDG
Sbjct: 199 QPVPYQTAAGNLRILLRSFTGIDRICISESLDGGENWSFAVPTVLPNPNSGIDGVKLKDG 258
Query: 250 RLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN 309
RL+LAYNT SRGVLK+ +S DDGDSW D LTLEE+ ME+SYPAVIQA DG+VH+TYTYN
Sbjct: 259 RLVLAYNTDSRGVLKLGVSLDDGDSWTDILTLEESPGMEYSYPAVIQAGDGNVHVTYTYN 318
Query: 310 RTQIKHVVL 318
RTQIKHVVL
Sbjct: 319 RTQIKHVVL 327
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 321 | ||||||
| TAIR|locus:2172580 | 358 | AT5G57700 "AT5G57700" [Arabido | 0.962 | 0.863 | 0.789 | 4.7e-135 | |
| UNIPROTKB|G4ML05 | 396 | MGG_08616 "Glycosyl hydrolase" | 0.311 | 0.252 | 0.371 | 3.6e-15 |
| TAIR|locus:2172580 AT5G57700 "AT5G57700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 244/309 (78%), Positives = 272/309 (88%)
Query: 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQS 69
++ E FTFPA+SAPFKSCHASTIVEV K HFL AYFGG+ EGAPDVKIWLQ FKDG+W S
Sbjct: 19 VLLETFTFPADSAPFKSCHASTIVEVVKDHFLAAYFGGTREGAPDVKIWLQHFKDGQWDS 78
Query: 70 PIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP 129
P+I DEEP VPM+NPVLFKLPS+ LLLFYKIGQEVQKWSGCMKRSY+KG+TW+EREQLPP
Sbjct: 79 PVIVDEEPGVPMYNPVLFKLPSHELLLFYKIGQEVQKWSGCMKRSYDKGITWTEREQLPP 138
Query: 130 GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVI 189
GILGP KNKPILLE+G LLCGSSVESWNSWG+WMEVT DAGR+WRK GPIYI +SLSVI
Sbjct: 139 GILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRTWRKKGPIYIQGKSLSVI 198
Query: 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDG 249
QPVP+ TA LR+L+RSF GI R+C+SES DGG WS+A PT L NPNSGIDGVKLKDG
Sbjct: 199 QPVPYQTAAGNLRILLRSFTGIDRICISESLDGGENWSFAVPTVLPNPNSGIDGVKLKDG 258
Query: 250 RLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN 309
RL+LAYNT SRGVLK+ +S DDGDSW D LTLEE+ ME+SYPAVIQA DG+VH+TYTYN
Sbjct: 259 RLVLAYNTDSRGVLKLGVSLDDGDSWTDILTLEESPGMEYSYPAVIQAGDGNVHVTYTYN 318
Query: 310 RTQIKHVVL 318
RTQIKHVVL
Sbjct: 319 RTQIKHVVL 327
|
|
| UNIPROTKB|G4ML05 MGG_08616 "Glycosyl hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 39/105 (37%), Positives = 52/105 (49%)
Query: 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG--RWQSPIIADEEPNVPMWNPV 85
HAS ++ + G L A+FGGS EG D+ IWL G W SP+ ++P NPV
Sbjct: 33 HASNLLLLPSGELLCAWFGGSMEGISDIYIWLSRLAPGAKEWTSPLQVSKDPGRSEQNPV 92
Query: 86 LFKLPSNGLLLFYKIGQEVQKWSGCMKR---SYNKGVTWSEREQL 127
LF +G L QE + C+ R S + G TW E E+L
Sbjct: 93 LFLDERSGNLWCIYTAQEHGAQNKCLVRRRISSDLGKTWGEAEEL 137
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 321 | |||
| pfam13088 | 279 | pfam13088, BNR_2, BNR repeat-like domain | 2e-94 | |
| COG4692 | 381 | COG4692, COG4692, Predicted neuraminidase (sialida | 2e-26 |
| >gnl|CDD|221914 pfam13088, BNR_2, BNR repeat-like domain | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 2e-94
Identities = 126/282 (44%), Positives = 156/282 (55%), Gaps = 18/282 (6%)
Query: 38 GHFLVAYFGGSCEGAPDVKIWL--QTFKDGRWQSP-IIAD--EEPNVPMWNPVLFKLPSN 92
G L A+FGGS EGAPDV IW G W +P ++AD + NPVLF P
Sbjct: 1 GTLLAAWFGGSREGAPDVAIWRSRSDDGGGTWSAPVVVADGEGRYGRKLGNPVLFVDPDG 60
Query: 93 GLLLFYKIGQEVQKWSGCM---KRSYNKGVTWSEREQLPPG----ILGPSKNKPILLENG 145
LLLFYK+G W+G + S + G TWS +LP G I GP KNKPI L +G
Sbjct: 61 TLLLFYKVGVSPGGWAGSLIYLITSTDDGKTWSAPRRLPDGPFLNISGPVKNKPIQLSDG 120
Query: 146 LLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLM 205
LL + E WG+ +E++ D G++W K P IQP + L L
Sbjct: 121 RLLLPAYHELGGKWGAHLELSDDGGKTWTKGRPPNAGT--GGEIQPSILPLPDGRLLALF 178
Query: 206 RSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVS---RGV 262
RS N GR+ SES DGG TWS +PT L NPNSGID V L DGRLLL YN S R
Sbjct: 179 RSRN-AGRILRSESSDGGETWSPPEPTDLPNPNSGIDAVNLSDGRLLLVYNPASKKGRAP 237
Query: 263 LKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHI 304
L +A+S DDG +W + LTLE+ E+SYPA+IQ DG +H+
Sbjct: 238 LSLAVSYDDGKTWEELLTLEDGPGGEYSYPALIQTPDGKLHV 279
|
This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. Length = 279 |
| >gnl|CDD|227036 COG4692, COG4692, Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 71/350 (20%), Positives = 124/350 (35%), Gaps = 57/350 (16%)
Query: 23 PFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMW 82
P + HA+ + + G + A+FGG+ EG D+ + + W P + +
Sbjct: 29 PMQQNHAAFLHRLPDGTLVCAWFGGTLEGKSDIFLSVLASSLNSWGEPQRLSADFSHSEQ 88
Query: 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPS----KNK 138
NPVLFK S+ L LF+ + + + + +L + P +
Sbjct: 89 NPVLFK-ASDNLWLFHTSQNQDECRIRMATKERDAHDPTRLIAKLGNYLDLPRGCFIRAP 147
Query: 139 PILLENG-----LLLCGSSVES-WN--SWGSWMEVTVDAGRSWR---------------- 174
+ +G + C WN + + ++D G+SWR
Sbjct: 148 LVGRSDGAWLLPIFRCIQRPGQIWNGSHDRAAVGPSLDLGKSWRLKDLNTSDGCVHLSPY 207
Query: 175 --------------KYGPIYI-----PNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVC 215
+ +Y + S QP N ++ +G R+
Sbjct: 208 HEGDTQYAALFRRRQADNVYRCELLDGGRTWSQPQPTLVPNNNSSIAAFRNLKDG--RIA 265
Query: 216 MSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVS-----RGVLKVALSKD 270
M + W + T+L N + + V + N V+ R +D
Sbjct: 266 MICNPPNAADWRASLYTELGNDDDDANLVGGCVPIWGVPRNPVNSDDGLRRFPLRIAIED 325
Query: 271 DGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320
+ S +L+ + E SYP +++ D S+HI YTYNR IK+V L P
Sbjct: 326 NPGSCLSLNSLDGH-NKEMSYPWLLEGPD-SLHIAYTYNRRAIKYVRLNP 373
|
Length = 381 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 100.0 | |
| cd00260 | 351 | Sialidase Sialidases or neuraminidases function to | 100.0 | |
| COG4692 | 381 | Predicted neuraminidase (sialidase) [Carbohydrate | 99.95 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 99.85 | |
| cd00260 | 351 | Sialidase Sialidases or neuraminidases function to | 99.73 | |
| PF13859 | 310 | BNR_3: BNR repeat-like domain; PDB: 3B69_A. | 99.73 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 99.41 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 99.37 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 99.32 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 99.26 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 99.19 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 99.0 | |
| COG4409 | 728 | NanH Neuraminidase (sialidase) [Carbohydrate trans | 98.96 | |
| PTZ00334 | 780 | trans-sialidase; Provisional | 98.89 | |
| PF13859 | 310 | BNR_3: BNR repeat-like domain; PDB: 3B69_A. | 98.83 | |
| cd08984 | 294 | GH43_5 Glycosyl hydrolase family 43. This glycosyl | 98.77 | |
| COG4447 | 339 | Uncharacterized protein related to plant photosyst | 98.65 | |
| cd08994 | 291 | GH43_like_2 Glycosyl hydrolase 43-like family cons | 98.61 | |
| cd08984 | 294 | GH43_5 Glycosyl hydrolase family 43. This glycosyl | 98.55 | |
| cd08772 | 286 | GH43_62_32_68 Glycosyl hydrolase families: GH43, G | 98.46 | |
| cd08994 | 291 | GH43_like_2 Glycosyl hydrolase 43-like family cons | 98.44 | |
| cd08995 | 280 | GH32_Aec43_like Glycosyl hydrolase family 32. This | 98.41 | |
| cd08772 | 286 | GH43_62_32_68 Glycosyl hydrolase families: GH43, G | 98.41 | |
| cd08993 | 268 | GH43_DUF377 Glycosyl hydrolase family 43 containin | 98.36 | |
| cd08996 | 298 | GH32_B_Fructosidase Glycosyl hydrolase family 32, | 98.31 | |
| cd08979 | 276 | GH_J Glycosyl hydrolase families 32 and 68, which | 98.25 | |
| smart00602 | 612 | VPS10 VPS10 domain. | 98.23 | |
| cd08979 | 276 | GH_J Glycosyl hydrolase families 32 and 68, which | 98.13 | |
| cd08978 | 271 | GH_F Glycosyl hydrolase families 43 and 62 form CA | 98.09 | |
| cd08999 | 287 | GH43_ABN_2 Glycosyl hydrolase family 43. This glyc | 98.01 | |
| cd08996 | 298 | GH32_B_Fructosidase Glycosyl hydrolase family 32, | 98.0 | |
| cd08993 | 268 | GH43_DUF377 Glycosyl hydrolase family 43 containin | 97.94 | |
| cd08999 | 287 | GH43_ABN_2 Glycosyl hydrolase family 43. This glyc | 97.88 | |
| COG4447 | 339 | Uncharacterized protein related to plant photosyst | 97.84 | |
| PF04616 | 286 | Glyco_hydro_43: Glycosyl hydrolases family 43; Int | 97.82 | |
| cd08995 | 280 | GH32_Aec43_like Glycosyl hydrolase family 32. This | 97.79 | |
| PF04616 | 286 | Glyco_hydro_43: Glycosyl hydrolases family 43; Int | 97.76 | |
| cd08978 | 271 | GH_F Glycosyl hydrolase families 43 and 62 form CA | 97.76 | |
| cd08990 | 274 | GH43_AXH_like Glycosyl hydrolase family 43, includ | 97.75 | |
| TIGR01322 | 445 | scrB_fam sucrose-6-phosphate hydrolase. | 97.71 | |
| PF00251 | 308 | Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t | 97.7 | |
| smart00602 | 612 | VPS10 VPS10 domain. | 97.7 | |
| cd08983 | 276 | GH43_4 Glycosyl hydrolase family 43. This glycosyl | 97.68 | |
| COG4692 | 381 | Predicted neuraminidase (sialidase) [Carbohydrate | 97.61 | |
| smart00640 | 437 | Glyco_32 Glycosyl hydrolases family 32. | 97.61 | |
| cd08983 | 276 | GH43_4 Glycosyl hydrolase family 43. This glycosyl | 97.54 | |
| PF02012 | 12 | BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe | 97.5 | |
| cd08990 | 274 | GH43_AXH_like Glycosyl hydrolase family 43, includ | 97.46 | |
| cd08981 | 291 | GH43_2 Glycosyl hydrolase family 43. This glycosyl | 97.39 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 97.28 | |
| PF02012 | 12 | BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe | 97.26 | |
| cd08998 | 288 | GH43_ABN_1 Glycosyl hydrolase family 43. This glyc | 97.19 | |
| PF00251 | 308 | Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t | 96.97 | |
| COG4409 | 728 | NanH Neuraminidase (sialidase) [Carbohydrate trans | 96.97 | |
| PF04041 | 312 | DUF377: Domain of unknown function (DUF377); Inter | 96.92 | |
| cd08991 | 294 | GH43_bXyl_2 Glycosyl hydrolase family 43. This gly | 96.86 | |
| cd08991 | 294 | GH43_bXyl_2 Glycosyl hydrolase family 43. This gly | 96.78 | |
| smart00640 | 437 | Glyco_32 Glycosyl hydrolases family 32. | 96.74 | |
| cd08985 | 265 | GH43_6 Glycosyl hydrolase family 43. This glycosyl | 96.7 | |
| cd08980 | 288 | GH43_1 Glycosyl hydrolase family 43. This glycosyl | 96.69 | |
| cd09000 | 288 | GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy | 96.57 | |
| cd09004 | 275 | GH43_bXyl Glycosyl hydrolase family 43, includes m | 96.56 | |
| cd08998 | 288 | GH43_ABN_1 Glycosyl hydrolase family 43. This glyc | 96.33 | |
| cd09000 | 288 | GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy | 96.32 | |
| COG1621 | 486 | SacC Beta-fructosidases (levanase/invertase) [Carb | 96.25 | |
| cd09001 | 269 | GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy | 96.22 | |
| cd09004 | 275 | GH43_bXyl Glycosyl hydrolase family 43, includes m | 96.18 | |
| PTZ00334 | 780 | trans-sialidase; Provisional | 95.93 | |
| cd08986 | 269 | GH43_7 Glycosyl hydrolase family 43. This glycosyl | 95.92 | |
| TIGR01322 | 445 | scrB_fam sucrose-6-phosphate hydrolase. | 95.76 | |
| COG3507 | 549 | XynB Beta-xylosidase [Carbohydrate transport and m | 95.38 | |
| PF04041 | 312 | DUF377: Domain of unknown function (DUF377); Inter | 95.31 | |
| cd08992 | 349 | GH43_like_1 Glycosyl hydrolase family 43, uncharac | 95.25 | |
| cd09003 | 311 | GH43_AXH_1 Glycosyl hydrolase family 43. This glyc | 95.06 | |
| cd09001 | 269 | GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy | 94.68 | |
| cd08986 | 269 | GH43_7 Glycosyl hydrolase family 43. This glycosyl | 94.37 | |
| cd08989 | 269 | GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo | 94.36 | |
| PF13810 | 316 | DUF4185: Domain of unknown function (DUF4185) | 94.34 | |
| cd08997 | 349 | GH68 Glycosyl hydrolase family 68, includes levans | 93.62 | |
| cd08981 | 291 | GH43_2 Glycosyl hydrolase family 43. This glycosyl | 93.15 | |
| COG1621 | 486 | SacC Beta-fructosidases (levanase/invertase) [Carb | 92.96 | |
| cd08982 | 295 | GH43_3 Glycosyl hydrolase family 43. This glycosyl | 92.75 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 92.51 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 92.02 | |
| cd08980 | 288 | GH43_1 Glycosyl hydrolase family 43. This glycosyl | 91.8 | |
| cd09002 | 280 | GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy | 91.27 | |
| cd09002 | 280 | GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy | 90.26 | |
| cd08989 | 269 | GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo | 89.04 | |
| PF13810 | 316 | DUF4185: Domain of unknown function (DUF4185) | 87.77 | |
| PF03664 | 271 | Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int | 86.73 | |
| cd08987 | 303 | GH62 Glycosyl hydrolase family 62, characterized a | 86.71 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 86.43 | |
| cd08985 | 265 | GH43_6 Glycosyl hydrolase family 43. This glycosyl | 86.25 | |
| cd08992 | 349 | GH43_like_1 Glycosyl hydrolase family 43, uncharac | 85.81 | |
| KOG0228 | 571 | consensus Beta-fructofuranosidase (invertase) [Car | 85.1 | |
| cd08997 | 349 | GH68 Glycosyl hydrolase family 68, includes levans | 84.32 | |
| KOG3511 | 720 | consensus Sortilin and related receptors [General | 83.8 | |
| cd08988 | 279 | GH43_ABN Glycosyl hydrolase family 43. This glycos | 81.59 | |
| PF03404 | 131 | Mo-co_dimer: Mo-co oxidoreductase dimerisation dom | 81.44 | |
| PF03664 | 271 | Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int | 81.24 |
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=296.16 Aligned_cols=263 Identities=36% Similarity=0.608 Sum_probs=211.5
Q ss_pred CcEEEEEecCCCCCCCCcEEEEEEeCC-C-CcCCcEEccCCC--CCCCCCeEEEEeCCCcEEEEEEeccccCCc---eeE
Q 020796 38 GHFLVAYFGGSCEGAPDVKIWLQTFKD-G-RWQSPIIADEEP--NVPMWNPVLFKLPSNGLLLFYKIGQEVQKW---SGC 110 (321)
Q Consensus 38 g~l~~~~~~~~~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~--~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~---~~~ 110 (321)
|+|+|+|+++..++..++.|++|+|+| | ||++|+.|...+ ...+.+|+++.+++|+|+|+|..+.....+ ...
T Consensus 1 G~l~a~~~~~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~ 80 (275)
T PF13088_consen 1 GRLLAVWEGGSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIY 80 (275)
T ss_dssp SEEEEEEEESSCSCCEEEEEEEECCCCCTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEE
T ss_pred CeEEEEEECCcccCCCCEEEEEEEeeCCCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEE
Confidence 789999999887887788888887776 5 999999887655 567889999988999999999654333222 233
Q ss_pred EEEecCCCCCCCCCccCCCC----CCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCc
Q 020796 111 MKRSYNKGVTWSEREQLPPG----ILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 111 ~~~S~D~G~TWs~~~~l~~~----~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~ 186 (321)
+.+|+|+|+||+++..|..+ ..++..++++++++|+++++.+.+........+++|+|+|+||+...++. ...
T Consensus 81 ~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~---~~~ 157 (275)
T PF13088_consen 81 YSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP---DGQ 157 (275)
T ss_dssp EEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE---CSE
T ss_pred EEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc---ccC
Confidence 58999999999999876543 22334455678889999999776633345778999999999999886442 223
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeC-CCCCeEEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNT-VSRGVLKV 265 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~-~~r~~l~~ 265 (321)
+++|+.++++++|+|++++|.. ....+++++|.|+|+||+++..+.++.+.+.+.++.+++|+++|+++. ..|.++.+
T Consensus 158 ~~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l 236 (275)
T PF13088_consen 158 GECEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSL 236 (275)
T ss_dssp EEEEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEE
T ss_pred CcceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEE
Confidence 6789999999999999999996 335889999999999999988777888777777788999999999985 36889999
Q ss_pred EEEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEE
Q 020796 266 ALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHI 304 (321)
Q Consensus 266 ~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v 304 (321)
++|.|+|++|.++..|.+++...++||.+++.+||.|||
T Consensus 237 ~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 237 YVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 999999999999999988766679999999999999986
|
... |
| >cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=244.87 Aligned_cols=298 Identities=18% Similarity=0.231 Sum_probs=216.5
Q ss_pred EEecCCCC--CCCccccceEEEecCCcEEEEEecCCC---CCCC-CcEEEEEEeCC-C-CcCCcEEccCCCC--CCCCCe
Q 020796 15 FTFPANSA--PFKSCHASTIVEVDKGHFLVAYFGGSC---EGAP-DVKIWLQTFKD-G-RWQSPIIADEEPN--VPMWNP 84 (321)
Q Consensus 15 ~~f~~~~~--~~~~~~~p~l~~~~~g~l~~~~~~~~~---~g~~-~~~i~~s~s~~-G-tWs~~~~~~~~~~--~~~~~p 84 (321)
+||.++.. .+.++|+|+|+.+++ .|+++. +.+. .... .+.|++++|.| | ||++++.+..... ....+|
T Consensus 2 ~i~~~~~~~~~~~~~RiPsl~~~~~-~lla~~-e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p 79 (351)
T cd00260 2 DIFVRGGSDGGVGSFRIPSLVCTPG-TLLAFA-DARYGGCSDRSNAIDIVARRSTDGGKTWSPSTVISDGDGKSSRVKDP 79 (351)
T ss_pred ceEecCCCCCceEEEecceEEEECC-EEEEEE-EEEEcCCCCCCcccceeEEEeccCCCcccccEEehhcCCCCCcEEcc
Confidence 68899866 889999999999997 666654 4332 1122 56688888876 5 9999988765433 457789
Q ss_pred EEEEeCCCcEEEEEEecccc----------CCceeEEEEecCCCCCCCCCccCCCCCCC-------CCCCccEEccCCeE
Q 020796 85 VLFKLPSNGLLLFYKIGQEV----------QKWSGCMKRSYNKGVTWSEREQLPPGILG-------PSKNKPILLENGLL 147 (321)
Q Consensus 85 ~l~~~~~G~l~l~~~~~~~~----------~~~~~~~~~S~D~G~TWs~~~~l~~~~~g-------~~~~~~~~~~~G~~ 147 (321)
+++.+++|+|+|++...... ..+...+.+|+|+|+||+.|..+.+.... ...+..+++.+|+|
T Consensus 80 ~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grl 159 (351)
T cd00260 80 TVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRL 159 (351)
T ss_pred eEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcE
Confidence 99887669999998653221 12345688999999999999887754310 11234577889999
Q ss_pred EEeeecccCC-CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCC
Q 020796 148 LCGSSVESWN-SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 148 ~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tW 226 (321)
+++.+.+... .....+++|+|+|+||+..... ....++.|+.+++++||+|++++|... .+.+.+++|.|+|+||
T Consensus 160 v~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~---~~~~~~~e~~i~el~dG~l~~~~R~~~-~~~~~~~~S~D~G~tW 235 (351)
T cd00260 160 VFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGV---NDAGGCSECSVVELSDGKLYMYTRDNS-GGRRPVYESRDMGTTW 235 (351)
T ss_pred EEEEEEEcCCCCEEEEEEEECCCCCCcEECCCC---CCCCCCcCCEEEEecCCEEEEEEeeCC-CCcEEEEEEcCCCcCc
Confidence 9997764422 3467889999999999876422 111356789999999999999999874 3677788999999999
Q ss_pred CCCccCCC---------CCCCCceeEEEcCC--CcEEEEE-eC---CCCCeEEEEEEcCCCCCCCcceeecccCCCceec
Q 020796 227 SYAKPTQL---------LNPNSGIDGVKLKD--GRLLLAY-NT---VSRGVLKVALSKDDGDSWHDALTLEENLAMEFSY 291 (321)
Q Consensus 227 s~~~~~~~---------~~~~~~~~~~~~~~--g~~~lv~-~~---~~r~~l~~~~S~D~G~tW~~~~~l~~~~~~~~~y 291 (321)
+.+..... +.+.....++.+.. |+.++++ ++ ..|..+.+++|.|+|++|.....+..+.. ..+|
T Consensus 236 s~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~d~g~~w~~~~~i~~~~~-~~~Y 314 (351)
T cd00260 236 TEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNSPDSRSNLTLWLTDNNGSRWLDVGPISNGTD-GSGY 314 (351)
T ss_pred ccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCCCCCCCceEEEEEeCCCceEEeeeeeccCCC-ceEE
Confidence 99875432 12221123344332 5444544 33 26889999999999999999988886532 4799
Q ss_pred eEEEEccC-----CeEEEEEEeCC----CeeEEEEeC
Q 020796 292 PAVIQASD-----GSVHITYTYNR----TQIKHVVLL 319 (321)
Q Consensus 292 p~~~~~~d-----g~l~v~y~~~~----~~i~~~~~~ 319 (321)
+.++++.| +.++++||..+ ..|+++.++
T Consensus 315 s~~~~~~~~~~~~~~~~~l~E~~~~~~~~~i~~~~~~ 351 (351)
T cd00260 315 STLTELPDTGDSCGYLGLLYELGRGLGSNSIVYVLFT 351 (351)
T ss_pred eeeeecCCccCCCCEEEEEEEcCCCCCcceEEEEEcC
Confidence 99999888 89999999986 788888764
|
They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. |
| >COG4692 Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=195.63 Aligned_cols=298 Identities=28% Similarity=0.402 Sum_probs=216.9
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEeCCC
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSN 92 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~~~G 92 (321)
+.++|... .+-.++|.+.+..+++|++.++||+++-||..|+.+.+..+.-..|.+|+.++-....++++|++|..+++
T Consensus 20 ~~vl~l~~-s~~~q~haaflhrl~~gtlv~awF~gt~eg~~D~~~s~~a~~~n~w~~pqrlsa~~~~s~~npvlf~~sdn 98 (381)
T COG4692 20 GRVLFLLI-SPMQQNHAAFLHRLPDGTLVCAWFGGTLEGKSDIFLSVLASSLNSWGEPQRLSADFSHSEQNPVLFKASDN 98 (381)
T ss_pred eeEEEeec-cccccCchHhhhcccccceechhhcccccCccchheeeehhhhcccCCcceeeeccCccccCceEEecCCc
Confidence 44556553 35578899999999999999999999999988986666666666999999998777788999999988766
Q ss_pred cEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCC---CC-CCCCccEEccCCeEEEeeec------ccCC--CCc
Q 020796 93 GLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGI---LG-PSKNKPILLENGLLLCGSSV------ESWN--SWG 160 (321)
Q Consensus 93 ~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~---~g-~~~~~~~~~~~G~~~~~~~~------~~~~--~~~ 160 (321)
||||++.+.....+-.....|+|.+.+|+-+..+.... .| ++....+..++|.|+.+.+. ..++ .++
T Consensus 99 -lwLF~t~~n~~~~~~~~~~~e~d~~~~~~~~a~lgn~l~lprg~~i~~~lv~~s~GaW~~~i~~~~~~pg~i~~~~~~r 177 (381)
T COG4692 99 -LWLFHTSQNQDECRIRMATKERDAHDPTRLIAKLGNYLDLPRGCFIRAPLVGRSDGAWLLPIFRCIQRPGQIWNGSHDR 177 (381)
T ss_pred -eEEEEccCCcceeeeeeeeeccccCCchhhhhccCCchhccCCCceeeeEEEecccchhhhhhhhhcCcccccCchhhh
Confidence 99999864222222334678999999999887654321 23 35555666789998875442 1122 357
Q ss_pred EEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCc
Q 020796 161 SWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSG 240 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~ 240 (321)
..+-+|.|.|++|+... ++ ...||+........++++.++++... .++++...+.|+|.+|+.++++..|...+.
T Consensus 178 a~v~~s~d~gk~wr~~~-ln---~s~g~v~l~p~~~~~t~y~al~~~~q-~~~~~~~el~~~~r~~~~~QPTl~p~~~~~ 252 (381)
T COG4692 178 AAVGPSLDLGKSWRLKD-LN---TSDGCVHLSPYHEGDTQYAALFRRRQ-ADNVYRCELLDGGRTWSQPQPTLVPNNNSS 252 (381)
T ss_pred cccccccccCceeeecc-cc---ccCccEecChhhcccccchhhhhhhh-cCCeeeeeeccCcccccCcCccccCCCCch
Confidence 88999999999999753 42 23477766666556788888886543 367888899999999999998877776666
Q ss_pred eeEEE-cCCCcEEEEEeCC--------------------------------CCC-----------eEEEEEEcCCCCCCC
Q 020796 241 IDGVK-LKDGRLLLAYNTV--------------------------------SRG-----------VLKVALSKDDGDSWH 276 (321)
Q Consensus 241 ~~~~~-~~~g~~~lv~~~~--------------------------------~r~-----------~l~~~~S~D~G~tW~ 276 (321)
+.+.+ +.+|+++++.+.. .|. ++++ -+.|++.+|-
T Consensus 253 I~a~rn~~dg~i~~~c~~~~~adw~~~~~t~L~n~dd~~nl~~~~~~i~~v~~nPv~s~~g~R~~~~~i-a~~dn~~s~l 331 (381)
T COG4692 253 IAAFRNLKDGRIAMICNPPNAADWRASLYTELGNDDDDANLVGGCVPIWGVPRNPVNSDDGLRRFPLRI-AIEDNPGSCL 331 (381)
T ss_pred hhhhhhcCccceEEecCCCchhhhchhhhhhccCCccccCcccCccceEEeecCCcCCccccccchhhe-eeccCCCcce
Confidence 66665 7888888886532 011 1111 1245555666
Q ss_pred cceeecccCCCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 277 DALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 277 ~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
....++. .+...+||.+..-++ .|+++|++||--||+|||.+
T Consensus 332 sl~~ld~-~n~E~SYP~~~~~~~-~lhI~YTynR~~IkyvRl~~ 373 (381)
T COG4692 332 SLNSLDG-HNKEMSYPWLLEGPD-SLHIAYTYNRRAIKYVRLNP 373 (381)
T ss_pred ecccccc-cCceeccchhccCCC-eEEEEEEeeccceeEEEecH
Confidence 5555543 345789999998555 99999999999999999975
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=163.27 Aligned_cols=233 Identities=22% Similarity=0.322 Sum_probs=150.1
Q ss_pred eeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCC-C-CcCCcEEccCCCCC---CCCCeE
Q 020796 12 AEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKD-G-RWQSPIIADEEPNV---PMWNPV 85 (321)
Q Consensus 12 ~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~~---~~~~p~ 85 (321)
+...|+.... +......|.|+..++|+|+++|..+.. .+.....+...+|.| | ||+++..+...... ......
T Consensus 34 ~~~~v~~~~~-~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~ 112 (275)
T PF13088_consen 34 EPRIVADGPK-PGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGP 112 (275)
T ss_dssp EEEEEETSTB-TTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEE
T ss_pred CCEEEeeccc-cCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceee
Confidence 3455666652 235557799998889999999844332 223344555688876 7 99999876533111 112222
Q ss_pred EEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEE
Q 020796 86 LFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEV 165 (321)
Q Consensus 86 l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 165 (321)
++..++|++++.+.. .........+.+|+|+|+||+....+... .+..+...+.+++|++++....+ .....++++
T Consensus 113 ~i~~~~G~l~~~~~~-~~~~~~~~~~~~S~D~G~tW~~~~~~~~~-~~~~e~~~~~~~dG~l~~~~R~~--~~~~~~~~~ 188 (275)
T PF13088_consen 113 PIQLPDGRLIAPYYH-ESGGSFSAFVYYSDDGGKTWSSGSPIPDG-QGECEPSIVELPDGRLLAVFRTE--GNDDIYISR 188 (275)
T ss_dssp EEEECTTEEEEEEEE-ESSCEEEEEEEEESSTTSSEEEEEECECS-EEEEEEEEEEETTSEEEEEEEEC--SSTEEEEEE
T ss_pred eeEecCCCEEEEEee-ccccCcceEEEEeCCCCceeecccccccc-CCcceeEEEECCCCcEEEEEEcc--CCCcEEEEE
Confidence 345569998876432 22233456788999999999988765421 12233344567899988765442 223678999
Q ss_pred ECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCC---CCcee
Q 020796 166 TVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNP---NSGID 242 (321)
Q Consensus 166 S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~---~~~~~ 242 (321)
|.|+|+||+.+.++.++... ..+.++.+++|++++++........+.+..|.|+|+||+.+..+. +.+ .+...
T Consensus 189 S~D~G~TWs~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~-~~~~~~~~Y~~ 264 (275)
T PF13088_consen 189 STDGGRTWSPPQPTNLPNPN---SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTID-DGPNGDSGYPS 264 (275)
T ss_dssp ESSTTSS-EEEEEEECSSCC---EEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEE-EEE-CCEEEEE
T ss_pred ECCCCCcCCCceecccCccc---CCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEe-CCCCCcEECCe
Confidence 99999999997755544321 234566788999999988544456788899999999999866542 112 23356
Q ss_pred EEEcCCCcEEE
Q 020796 243 GVKLKDGRLLL 253 (321)
Q Consensus 243 ~~~~~~g~~~l 253 (321)
++.++||++++
T Consensus 265 ~~~~~dg~l~i 275 (275)
T PF13088_consen 265 LTQLPDGKLYI 275 (275)
T ss_dssp EEEEETTEEEE
T ss_pred eEEeCCCcCCC
Confidence 67778888875
|
... |
| >cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-15 Score=139.33 Aligned_cols=204 Identities=20% Similarity=0.203 Sum_probs=128.6
Q ss_pred CCCCCeEEEEeCCCcEEEEEEecc----ccC-CceeEEEEecCCCCCCCCCccCCCCCCC--CCCCccEEccC-CeEEEe
Q 020796 79 VPMWNPVLFKLPSNGLLLFYKIGQ----EVQ-KWSGCMKRSYNKGVTWSEREQLPPGILG--PSKNKPILLEN-GLLLCG 150 (321)
Q Consensus 79 ~~~~~p~l~~~~~G~l~l~~~~~~----~~~-~~~~~~~~S~D~G~TWs~~~~l~~~~~g--~~~~~~~~~~~-G~~~~~ 150 (321)
..++.|.|+..++ .|++++.... +.. .-+..+++|+|+|+||+++..+...... ....+.++... |++++.
T Consensus 14 ~~~RiPsl~~~~~-~lla~~e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p~~v~~~~g~l~l~ 92 (351)
T cd00260 14 GSFRIPSLVCTPG-TLLAFADARYGGCSDRSNAIDIVARRSTDGGKTWSPSTVISDGDGKSSRVKDPTVVVDGLGRVFLL 92 (351)
T ss_pred EEEecceEEEECC-EEEEEEEEEEcCCCCCCcccceeEEEeccCCCcccccEEehhcCCCCCcEEcceEEEcCCCCEEEE
Confidence 3577899998877 7777765321 112 2245688999999999999877653211 11222233333 888665
Q ss_pred eeccc-----------CCCCcEEEEEECCCCceeEEeeceecCCC--Ccceee--e-eEEEcCCCeEEEEEeecCC--CC
Q 020796 151 SSVES-----------WNSWGSWMEVTVDAGRSWRKYGPIYIPNE--SLSVIQ--P-VPFHTANRTLRVLMRSFNG--IG 212 (321)
Q Consensus 151 ~~~~~-----------~~~~~~~~~~S~D~G~tW~~~~~~~~~~~--~~~~~~--~-~~~~~~~G~l~~~~r~~~~--~~ 212 (321)
..... .......+.+|+|+|+||+.+..+..... ...... + ..+++.+|+|++.++.... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~ 172 (351)
T cd00260 93 VGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRV 172 (351)
T ss_pred EEECCCcccccccccCCCceEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCE
Confidence 33211 11346788999999999998764432110 111111 1 2355678999888765432 23
Q ss_pred cEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 213 RVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 213 ~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
...+.+|+|+|+||+...............++.+++|+++|+.+......+.++.|.|+|+||+++.....
T Consensus 173 ~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~ 243 (351)
T cd00260 173 SSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLS 243 (351)
T ss_pred EEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCcc
Confidence 45667899999999876543210112235678888999999887643456678999999999999865443
|
They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. |
| >PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=133.33 Aligned_cols=267 Identities=18% Similarity=0.293 Sum_probs=141.5
Q ss_pred cceEEEecCCcEEEEEecCCC---CCCCCcEEEEEEeCC-C-CcCCcEEccCC----CCCCCCCeEEEEeCCCcEEEEEE
Q 020796 29 ASTIVEVDKGHFLVAYFGGSC---EGAPDVKIWLQTFKD-G-RWQSPIIADEE----PNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~---~g~~~~~i~~s~s~~-G-tWs~~~~~~~~----~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
.|+|+.. +|.|+|+ .+.+. .......|....+.+ + +|+.+..+... ......+|..+ .+.+.||++..
T Consensus 1 vPSLV~v-gGvv~Av-AEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtv-vkgn~IymLvG 77 (310)
T PF13859_consen 1 VPSLVEV-GGVVFAV-AEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTV-VKGNKIYMLVG 77 (310)
T ss_dssp -EEEEEE-TTEEEEE-EEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEE-EETTEEEEEEE
T ss_pred CCCEEEE-CCEEEEE-EEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeee-ecceeEEEEEE
Confidence 4899988 4778776 34332 112234455555543 5 99998754321 12234467643 45788998864
Q ss_pred ecc---ccCCceeEEEEecCCCCCCCCCccCCCCCC----CC--CCCccEEccCCeEEEeeecccCCCC--cEEEEEECC
Q 020796 100 IGQ---EVQKWSGCMKRSYNKGVTWSEREQLPPGIL----GP--SKNKPILLENGLLLCGSSVESWNSW--GSWMEVTVD 168 (321)
Q Consensus 100 ~~~---~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~----g~--~~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~S~D 168 (321)
... ....|...+++|+|+|.+|..+..+..... .. -.++.+++.||.+++|......++. ...+++|+|
T Consensus 78 ~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d 157 (310)
T PF13859_consen 78 SYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTD 157 (310)
T ss_dssp EESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESS
T ss_pred EEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECC
Confidence 311 123566778899999999999988764221 11 1234578899999998654332333 567899999
Q ss_pred CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-C-----CCCCC-Cce
Q 020796 169 AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-Q-----LLNPN-SGI 241 (321)
Q Consensus 169 ~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~-----~~~~~-~~~ 241 (321)
+|++|..+.... ..+|.+|++++.++|+|+|+.+...+..++| .|.|.|.||+.+..+ . .+... ..+
T Consensus 158 ~g~~W~lskg~s----~~gC~~psv~EWe~gkLlM~~~c~~g~rrVY--eS~DmG~tWtea~gtlsrVw~ns~~~~~~~v 231 (310)
T PF13859_consen 158 DGKTWKLSKGMS----PAGCSDPSVVEWEDGKLLMMTACDDGRRRVY--ESGDMGTTWTEALGTLSRVWGNSQGVQGGFV 231 (310)
T ss_dssp TTSS-EE-S--------TT-EEEEEEEE-TTEEEEEEE-TTS---EE--EESSTTSS-EE-TTTTTT---SST-----EE
T ss_pred CccceEeccccC----CCCcceEEEEeccCCeeEEEEecccceEEEE--EEcccceehhhccCccceeeccccccCccce
Confidence 999999875331 2489999999998999999998876434554 689999999985432 1 11111 112
Q ss_pred eE--EEcCCCcEEEEEe-C-------CCCCeEEEEEEcCCCCCCCcceeecccCCCceeceEEEEccCC------eEEEE
Q 020796 242 DG--VKLKDGRLLLAYN-T-------VSRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDG------SVHIT 305 (321)
Q Consensus 242 ~~--~~~~~g~~~lv~~-~-------~~r~~l~~~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg------~l~v~ 305 (321)
.+ ....+|+-+|++. + ..+..|.++++ |+-+++.-- .+.... .+..+..|....++ .|+++
T Consensus 232 ~~~~ta~iegr~VmL~T~~~y~~~~~~~~~~L~LWlT-Dn~r~~~vG-pvs~~~-~~~~~ssLLY~~~~~~~~~~~L~~l 308 (310)
T PF13859_consen 232 TAGITATIEGRKVMLYTQPVYSSGNEKEKGRLHLWLT-DNNRIFDVG-PVSMED-DDAAASSLLYKSGKGNNNKEELIAL 308 (310)
T ss_dssp EE----EETTEEEEEEEEE---SS-T-T-B-EEEEEE-SSS-EEEEE-E-S-TT--B---EEEEE-SS--------EEEE
T ss_pred eeeeeeccCCcEEEEEEEeeccccCccccceeEEEeC-CCcEEEEEe-cccCCC-cchhhhhceEecCCcccceeeEEEe
Confidence 22 1234577667653 2 15678999996 445544332 232111 24567788875443 48999
Q ss_pred EE
Q 020796 306 YT 307 (321)
Q Consensus 306 y~ 307 (321)
|+
T Consensus 309 ye 310 (310)
T PF13859_consen 309 YE 310 (310)
T ss_dssp EE
T ss_pred cC
Confidence 86
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-11 Score=105.50 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCcEEEEEecCCCCCCC--CcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEE
Q 020796 37 KGHFLVAYFGGSCEGAP--DVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKR 113 (321)
Q Consensus 37 ~g~l~~~~~~~~~~g~~--~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~ 113 (321)
+..|+.++|....+|.. .....+.+.++| ||++...-.+.+...+.+.+-+ . +.+.++. +. .+.+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f-~-~~~g~iv---G~-----~g~ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISF-D-GNEGWIV---GE-----PGLLLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEE-E-TTEEEEE---EE-----TTEEEE
T ss_pred CCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEe-c-CCceEEE---cC-----CceEEE
Confidence 45778887775544311 112456677777 9998663333221222222222 2 3445543 21 346899
Q ss_pred ecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeE
Q 020796 114 SYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVP 193 (321)
Q Consensus 114 S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~ 193 (321)
|+|+|+||+.... .....|.. ..+..+.++.+++.. ....+++|+|+|++|+.... + ..+.+ ..+
T Consensus 86 T~DgG~tW~~v~l-~~~lpgs~-~~i~~l~~~~~~l~~-------~~G~iy~T~DgG~tW~~~~~----~-~~gs~-~~~ 150 (302)
T PF14870_consen 86 TTDGGKTWERVPL-SSKLPGSP-FGITALGDGSAELAG-------DRGAIYRTTDGGKTWQAVVS----E-TSGSI-NDI 150 (302)
T ss_dssp ESSTTSS-EE-----TT-SS-E-EEEEEEETTEEEEEE-------TT--EEEESSTTSSEEEEE-----S-----E-EEE
T ss_pred ecCCCCCcEEeec-CCCCCCCe-eEEEEcCCCcEEEEc-------CCCcEEEeCCCCCCeeEccc----C-Cccee-EeE
Confidence 9999999987542 21111100 112344556555432 23679999999999997531 1 11211 123
Q ss_pred EEcCCCeEEEEEeecC--------------------------------------CCCcEEEEEeccCCcCCCCCccCCCC
Q 020796 194 FHTANRTLRVLMRSFN--------------------------------------GIGRVCMSESCDGGLTWSYAKPTQLL 235 (321)
Q Consensus 194 ~~~~~G~l~~~~r~~~--------------------------------------~~~~~~~~~S~D~G~tWs~~~~~~~~ 235 (321)
...+||+++++-.... ..+.++.+...|.+.+|+++.. ++.
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~-~~~ 229 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPII-PIK 229 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B--TTS
T ss_pred EECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccC-Ccc
Confidence 4455666555431100 0022222211255566665431 111
Q ss_pred CCCCc-eeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 236 NPNSG-IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 236 ~~~~~-~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
....+ +.+....++.++++.... .+++|.|+|+||++......
T Consensus 230 ~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 230 TNGYGILDLAYRPPNEIWAVGGSG-----TLLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp S--S-EEEEEESSSS-EEEEESTT------EEEESSTTSS-EE-GGGTT
T ss_pred cCceeeEEEEecCCCCEEEEeCCc-----cEEEeCCCCccceECccccC
Confidence 11111 233444456666665433 68899999999998765543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-10 Score=102.46 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=83.7
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEE-CCCCceeEEeeceecCCCCc
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVT-VDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S-~D~G~tW~~~~~~~~~~~~~ 186 (321)
.+.+++|+|+|+||+....-.. +.. ..+...++|.+++.. ....++.| +|+|++|+... . .. ..
T Consensus 151 ~G~i~~S~DgG~tW~~~~~~~~---g~~-~~i~~~~~g~~v~~g-------~~G~i~~s~~~gg~tW~~~~-~--~~-~~ 215 (334)
T PRK13684 151 VGAIYRTTDGGKNWEALVEDAA---GVV-RNLRRSPDGKYVAVS-------SRGNFYSTWEPGQTAWTPHQ-R--NS-SR 215 (334)
T ss_pred cceEEEECCCCCCceeCcCCCc---ceE-EEEEECCCCeEEEEe-------CCceEEEEcCCCCCeEEEee-C--CC-cc
Confidence 4568999999999997543221 111 112234566544331 13456666 47779998753 1 11 11
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCce-eEEEcCCCcEEEEEeCCCCCeEEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGI-DGVKLKDGRLLLAYNTVSRGVLKV 265 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~-~~~~~~~g~~~lv~~~~~r~~l~~ 265 (321)
.. ..+...++|+++++... +.++ ..|.|+|.+|+.... +.......+ .+...++++++++.+.. .+
T Consensus 216 ~l--~~i~~~~~g~~~~vg~~----G~~~-~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~G-----~v 282 (334)
T PRK13684 216 RL--QSMGFQPDGNLWMLARG----GQIR-FNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGNG-----TL 282 (334)
T ss_pred cc--eeeeEcCCCCEEEEecC----CEEE-EccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCCC-----eE
Confidence 11 23455677888776432 3333 337899999997532 111111122 33444578888887643 56
Q ss_pred EEEcCCCCCCCcce
Q 020796 266 ALSKDDGDSWHDAL 279 (321)
Q Consensus 266 ~~S~D~G~tW~~~~ 279 (321)
.+|.|+|++|+...
T Consensus 283 ~~S~d~G~tW~~~~ 296 (334)
T PRK13684 283 LVSKDGGKTWEKDP 296 (334)
T ss_pred EEeCCCCCCCeECC
Confidence 78999999999864
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-10 Score=100.72 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=109.7
Q ss_pred CcEEEEEe--cCCCCCC--CCcEEEEEEeCCC-CcCCcEEcc-CCCCC-CCCCeEEEEeCCCcEEEEEEeccccCCceeE
Q 020796 38 GHFLVAYF--GGSCEGA--PDVKIWLQTFKDG-RWQSPIIAD-EEPNV-PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGC 110 (321)
Q Consensus 38 g~l~~~~~--~~~~~g~--~~~~i~~s~s~~G-tWs~~~~~~-~~~~~-~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~ 110 (321)
..|+.++| ....+|. +...+.+.+.++| ||++..... .++.. .+.+-+.+. +++.|++ + ..+.
T Consensus 88 ~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~--~~~g~~v---G-----~~G~ 157 (398)
T PLN00033 88 VVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFK--GKEGWII---G-----KPAI 157 (398)
T ss_pred CceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEE--CCEEEEE---c-----CceE
Confidence 36888888 3333331 1223456666667 999854211 11221 122222232 3455543 2 1457
Q ss_pred EEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEee--cee--cC-CCC
Q 020796 111 MKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYG--PIY--IP-NES 185 (321)
Q Consensus 111 ~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~--~~~--~~-~~~ 185 (321)
+.+|+|+|+||+.... .+...+. ........++..++.. ....+++|+|+|++|+... +.. +. ...
T Consensus 158 il~T~DgG~tW~~~~~-~~~~p~~-~~~i~~~~~~~~~ivg-------~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~ 228 (398)
T PLN00033 158 LLHTSDGGETWERIPL-SPKLPGE-PVLIKATGPKSAEMVT-------DEGAIYVTSNAGRNWKAAVEETVSATLNRTVS 228 (398)
T ss_pred EEEEcCCCCCceECcc-ccCCCCC-ceEEEEECCCceEEEe-------ccceEEEECCCCCCceEccccccccccccccc
Confidence 8999999999986432 1111000 0111222334333331 2456999999999999752 100 00 000
Q ss_pred ---cc--ee---eeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcC-CCCCccCCCCCCCCceeEEEcCCCcEEEEEe
Q 020796 186 ---LS--VI---QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLT-WSYAKPTQLLNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 186 ---~~--~~---~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~t-Ws~~~~~~~~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
.+ .. -..+...+||+++++... +.++ +|.|.|.+ |.+... +....-..+....+|.++|+.+
T Consensus 229 s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~----G~~~--~s~d~G~~~W~~~~~---~~~~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 229 SGISGASYYTGTFSTVNRSPDGDYVAVSSR----GNFY--LTWEPGQPYWQPHNR---ASARRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred ccccccceeccceeeEEEcCCCCEEEEECC----ccEE--EecCCCCcceEEecC---CCccceeeeeEcCCCCEEEEeC
Confidence 00 00 113345677877765432 4444 57788887 786442 2222222344567899999987
Q ss_pred CCCCCeEEEEEEcCCCCCCC
Q 020796 257 TVSRGVLKVALSKDDGDSWH 276 (321)
Q Consensus 257 ~~~r~~l~~~~S~D~G~tW~ 276 (321)
.. .+..|.|+|.+|+
T Consensus 300 ~G-----~l~~S~d~G~~~~ 314 (398)
T PLN00033 300 GG-----GLYVSKGTGLTEE 314 (398)
T ss_pred Cc-----eEEEecCCCCccc
Confidence 64 6788999999885
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-09 Score=97.52 Aligned_cols=189 Identities=19% Similarity=0.208 Sum_probs=105.5
Q ss_pred EEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC-----
Q 020796 56 KIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP----- 129 (321)
Q Consensus 56 ~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~----- 129 (321)
.+++.+.++| ||+....-...|.... .+....++..+++ . ..+.+++|+|+|+||+.....+.
T Consensus 156 G~il~T~DgG~tW~~~~~~~~~p~~~~---~i~~~~~~~~~iv-g-------~~G~v~~S~D~G~tW~~~~~~t~~~~l~ 224 (398)
T PLN00033 156 AILLHTSDGGETWERIPLSPKLPGEPV---LIKATGPKSAEMV-T-------DEGAIYVTSNAGRNWKAAVEETVSATLN 224 (398)
T ss_pred eEEEEEcCCCCCceECccccCCCCCce---EEEEECCCceEEE-e-------ccceEEEECCCCCCceEccccccccccc
Confidence 3556666667 9986432111121111 1222334444443 1 14568999999999986522110
Q ss_pred -----CCCC--CCCCc---cEEccCCeEEEeeecccCCCCcEEEEEECCCCce-eEEeeceecCCCCcceeeeeEEEcCC
Q 020796 130 -----GILG--PSKNK---PILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS-WRKYGPIYIPNESLSVIQPVPFHTAN 198 (321)
Q Consensus 130 -----~~~g--~~~~~---~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (321)
+..+ +..+. .....+|++++.. .+..+++|.|+|.+ |++.. . +. .... ..+....+
T Consensus 225 ~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg-------~~G~~~~s~d~G~~~W~~~~-~--~~-~~~l--~~v~~~~d 291 (398)
T PLN00033 225 RTVSSGISGASYYTGTFSTVNRSPDGDYVAVS-------SRGNFYLTWEPGQPYWQPHN-R--AS-ARRI--QNMGWRAD 291 (398)
T ss_pred ccccccccccceeccceeeEEEcCCCCEEEEE-------CCccEEEecCCCCcceEEec-C--CC-ccce--eeeeEcCC
Confidence 1111 01111 2334566655542 23568999999987 89753 2 11 1111 23444678
Q ss_pred CeEEEEEeecCCCCcEEEEEeccCCcCCCC--CccCCCCCCCCc-eeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCC
Q 020796 199 RTLRVLMRSFNGIGRVCMSESCDGGLTWSY--AKPTQLLNPNSG-IDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSW 275 (321)
Q Consensus 199 G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~--~~~~~~~~~~~~-~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW 275 (321)
|.++++.+. +.+ ..|.|.|++|+. ......+..... ..+...+++.++++.+.. .+.+|.|+|++|
T Consensus 292 g~l~l~g~~----G~l--~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-----~v~~s~D~G~tW 360 (398)
T PLN00033 292 GGLWLLTRG----GGL--YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG-----ILLRSTDGGKSW 360 (398)
T ss_pred CCEEEEeCC----ceE--EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-----cEEEeCCCCcce
Confidence 899887644 445 457899998863 222222211112 334556778998888754 678899999999
Q ss_pred Ccce
Q 020796 276 HDAL 279 (321)
Q Consensus 276 ~~~~ 279 (321)
+...
T Consensus 361 ~~~~ 364 (398)
T PLN00033 361 KRDK 364 (398)
T ss_pred eEcc
Confidence 9864
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-09 Score=94.67 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=79.7
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcc
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLS 187 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~ 187 (321)
.+.+.+|+|+|+||+....- ....+ .........++.+++. +....+++|+|+|+||+....- . .+
T Consensus 108 ~g~i~~S~DgG~tW~~~~~~-~~~~~-~~~~i~~~~~~~~~~~-------g~~G~i~~S~DgG~tW~~~~~~-~----~g 173 (334)
T PRK13684 108 PSLLLHTTDGGKNWTRIPLS-EKLPG-SPYLITALGPGTAEMA-------TNVGAIYRTTDGGKNWEALVED-A----AG 173 (334)
T ss_pred CceEEEECCCCCCCeEccCC-cCCCC-CceEEEEECCCcceee-------eccceEEEECCCCCCceeCcCC-C----cc
Confidence 34688999999999876421 11101 0001222223333332 1245799999999999985411 1 12
Q ss_pred eeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEE
Q 020796 188 VIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVAL 267 (321)
Q Consensus 188 ~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~ 267 (321)
.+ ..+...++|.++++... +.++. ..+|+|++|+.... +....-..+...++++++++.+.. .+.+
T Consensus 174 ~~-~~i~~~~~g~~v~~g~~----G~i~~-s~~~gg~tW~~~~~---~~~~~l~~i~~~~~g~~~~vg~~G-----~~~~ 239 (334)
T PRK13684 174 VV-RNLRRSPDGKYVAVSSR----GNFYS-TWEPGQTAWTPHQR---NSSRRLQSMGFQPDGNLWMLARGG-----QIRF 239 (334)
T ss_pred eE-EEEEECCCCeEEEEeCC----ceEEE-EcCCCCCeEEEeeC---CCcccceeeeEcCCCCEEEEecCC-----EEEE
Confidence 11 13444566766544321 44443 23577899987432 111111234455788988886543 2334
Q ss_pred -EcCCCCCCCcce
Q 020796 268 -SKDDGDSWHDAL 279 (321)
Q Consensus 268 -S~D~G~tW~~~~ 279 (321)
|.|+|.+|+.+.
T Consensus 240 ~s~d~G~sW~~~~ 252 (334)
T PRK13684 240 NDPDDLESWSKPI 252 (334)
T ss_pred ccCCCCCcccccc
Confidence 689999999753
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.4e-09 Score=92.03 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=70.3
Q ss_pred eEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeece--ecCCCCc
Q 020796 109 GCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI--YIPNESL 186 (321)
Q Consensus 109 ~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~--~~~~~~~ 186 (321)
+.+.+|+|+|+||++...-.+....... ..+...+...++.. + ...+++|+|+|+||+... + .+++..+
T Consensus 37 g~il~T~DGG~tW~~~~~~~~~~~~~~l-~~I~f~~~~g~ivG--~-----~g~ll~T~DgG~tW~~v~-l~~~lpgs~~ 107 (302)
T PF14870_consen 37 GTILKTTDGGKTWQPVSLDLDNPFDYHL-NSISFDGNEGWIVG--E-----PGLLLHTTDGGKTWERVP-LSSKLPGSPF 107 (302)
T ss_dssp TEEEEESSTTSS-EE-----S-----EE-EEEEEETTEEEEEE--E-----TTEEEEESSTTSS-EE-----TT-SS-EE
T ss_pred CEEEEECCCCccccccccCCCccceeeE-EEEEecCCceEEEc--C-----CceEEEecCCCCCcEEee-cCCCCCCCee
Confidence 4688999999999976532111101111 11233344444431 1 356999999999999863 2 1232221
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVA 266 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~ 266 (321)
.+..+.++.++++.. .+.+| +|.|+|+||+.... + ...+-..+.+.++|++++|... +. ++
T Consensus 108 -----~i~~l~~~~~~l~~~----~G~iy--~T~DgG~tW~~~~~-~--~~gs~~~~~r~~dG~~vavs~~---G~--~~ 168 (302)
T PF14870_consen 108 -----GITALGDGSAELAGD----RGAIY--RTTDGGKTWQAVVS-E--TSGSINDITRSSDGRYVAVSSR---GN--FY 168 (302)
T ss_dssp -----EEEEEETTEEEEEET----T--EE--EESSTTSSEEEEE--S------EEEEEE-TTS-EEEEETT---SS--EE
T ss_pred -----EEEEcCCCcEEEEcC----CCcEE--EeCCCCCCeeEccc-C--CcceeEeEEECCCCcEEEEECc---cc--EE
Confidence 344556666655432 25565 58999999987442 1 1111234567889998888753 32 45
Q ss_pred EEcCCCCC-CCcce
Q 020796 267 LSKDDGDS-WHDAL 279 (321)
Q Consensus 267 ~S~D~G~t-W~~~~ 279 (321)
.|.|.|.+ |.+..
T Consensus 169 ~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 169 SSWDPGQTTWQPHN 182 (302)
T ss_dssp EEE-TT-SS-EEEE
T ss_pred EEecCCCccceEEc
Confidence 56666754 76654
|
|
| >COG4409 NanH Neuraminidase (sialidase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-07 Score=90.08 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=87.7
Q ss_pred EEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCC-CCCCc
Q 020796 162 WMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLL-NPNSG 240 (321)
Q Consensus 162 ~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~-~~~~~ 240 (321)
...+|+|+|++|+... .+++.... ..+..++++.+|.+.++.|... +.+.++.|.|+|+||+.+.-.+.. ++..+
T Consensus 546 ~~~~sDd~~~~sq~sv-~~i~~~~~-saeaa~vel~~~~~~~f~Rt~~--~~~~Y~~skd~G~tWs~~~y~~~~~n~~~g 621 (728)
T COG4409 546 YNKLSDDGGANSQVSV-TPIPSSTQ-SAEAAMVELSKGKIQAFGRTDQ--GKIAYRTSKDGGETWSVDKYFSYGGNVSYG 621 (728)
T ss_pred ceeeecCCCCcceeee-eecCcccc-chhHHHHHhccchhhhhhhhcc--cceeEEEeccCCeeeehhhhccccCCccce
Confidence 3466788888888763 22222211 2344667888888888888764 457778899999999976543211 11111
Q ss_pred -----eeEEEcCCCcEEEE-EeCC-------CCCeEEEEEEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEE
Q 020796 241 -----IDGVKLKDGRLLLA-YNTV-------SRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYT 307 (321)
Q Consensus 241 -----~~~~~~~~g~~~lv-~~~~-------~r~~l~~~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~ 307 (321)
+....+.|+..+++ ..+. .|..|.+.-|.|++.+|..+.-+.- +...+.|..+.+++.-...+.++
T Consensus 622 t~~Ssis~~~~~D~~~av~~~~pn~~~g~~~g~~~Lglin~~d~~~~wky~~dv~y-~~~~~~ys~i~~l~~~~~~~~~e 700 (728)
T COG4409 622 TQYSSISYRQLGDGEHAVIVSTPNGNIGGKDGRYRLGLINSSDNPIDWKYHQDVDY-KIGGYAYSYILELDNEKQGTPFE 700 (728)
T ss_pred eeeeeeeeeccCCcceEEEEecCCCCcccccceEEeeeeeccCCcceeeeeeeccc-ccCceEeeeeecCCchhccceee
Confidence 22234556655554 4443 3556666777899999998853332 23467888888887655544444
Q ss_pred e
Q 020796 308 Y 308 (321)
Q Consensus 308 ~ 308 (321)
.
T Consensus 701 ~ 701 (728)
T COG4409 701 K 701 (728)
T ss_pred e
Confidence 3
|
|
| >PTZ00334 trans-sialidase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-08 Score=93.43 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=105.5
Q ss_pred CccEEccCCeEEEeeecccCCCC-cEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEE
Q 020796 137 NKPILLENGLLLCGSSVESWNSW-GSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVC 215 (321)
Q Consensus 137 ~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~ 215 (321)
+..+++.||.+++|......++. ...+++|+|+|. |..+... + ..+|.+|.+++.++|+|+|+.+...+..++
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~-W~ls~g~--s--~~gC~~P~I~EWe~gkLlM~t~C~dG~RrV- 336 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATES-GNLSKGM--S--ADGCSDPSVVEWKEGKLMMMTACDDGRRRV- 336 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCC-eEEcCCC--C--CCCCCCCEEEEEcCCeEEEEEEeCCCCEEE-
Confidence 45688999999998654322232 346788999986 9865422 1 247899999999889999988776533344
Q ss_pred EEEeccCCcCCCCCccCC------C-----CCCCCceeEEEcCCCcEEEEEeC-C-------CCCeEEEEEEcCCCCCCC
Q 020796 216 MSESCDGGLTWSYAKPTQ------L-----LNPNSGIDGVKLKDGRLLLAYNT-V-------SRGVLKVALSKDDGDSWH 276 (321)
Q Consensus 216 ~~~S~D~G~tWs~~~~~~------~-----~~~~~~~~~~~~~~g~~~lv~~~-~-------~r~~l~~~~S~D~G~tW~ 276 (321)
..|.|.|.||+....+- . +...+.+-.+. .+++-+|++.. . .+..|.+|++ |+.+.+.
T Consensus 337 -YES~DmG~tWtEAlGTLsrVW~ns~~~~~~~~~~~~iTat-Ie~r~VML~T~p~y~~~~~~~~~~L~LWlT-Dn~ri~~ 413 (780)
T PTZ00334 337 -YESGDKGDSWTEALGTLSRVWGNKQKGNEKGVGSGFSTAT-IENRDVMLVTLPVYSNRKGKEKGELHLWLT-DNTHIVD 413 (780)
T ss_pred -EEECCCCCChhhCCCccceeeccCCCCCCCCCCCccEEEE-ECCCEEEEEecccccCcccccccceeEEEe-cCCeEEE
Confidence 56899999999865320 0 11112222222 25777777642 1 2567888886 4444443
Q ss_pred cceeecccCCCceeceEEEEcc-------CCeEEEEEEeCC------CeeEEEEeCC
Q 020796 277 DALTLEENLAMEFSYPAVIQAS-------DGSVHITYTYNR------TQIKHVVLLP 320 (321)
Q Consensus 277 ~~~~l~~~~~~~~~yp~~~~~~-------dg~l~v~y~~~~------~~i~~~~~~~ 320 (321)
---+-.+. +..+..|.... ++.|+++|+..+ ..|-.++||+
T Consensus 414 vGpvs~d~---~~~aSsLLY~~~~~~~~~~~~L~~LyEk~~~~~~~s~~i~~~rLTe 467 (780)
T PTZ00334 414 IGPVSGDD---DAAASSLLYKSAGSGNNNNERLIALYEKKKGGGESSLGMVSVRLTA 467 (780)
T ss_pred eccccccc---cchhhhheeeccccCCCcccceEEEeeeccCCCCccceEEeehhHH
Confidence 22111111 23455565532 237999998643 2677888775
|
|
| >PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-07 Score=82.03 Aligned_cols=192 Identities=19% Similarity=0.219 Sum_probs=99.8
Q ss_pred eEEEEeCCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCCCCCC--C--CCCccEEccCCeEEEe--eec
Q 020796 84 PVLFKLPSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPPGILG--P--SKNKPILLENGLLLCG--SSV 153 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g--~--~~~~~~~~~~G~~~~~--~~~ 153 (321)
|.|+.. +|.|+++....-. .........++.|+|.||+.+..+...... . ...+..+...+.||+- .|.
T Consensus 2 PSLV~v-gGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~ 80 (310)
T PF13859_consen 2 PSLVEV-GGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYS 80 (310)
T ss_dssp EEEEEE-TTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEES
T ss_pred CCEEEE-CCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEe
Confidence 778766 8888887664311 122234456799999999988754321110 0 1111223345666553 233
Q ss_pred ccC--CCCcEEEEEECCCCceeEEeeceecCCCC--cceee--eeEEEcCCCeEEEEEeecC--CCC-cEEEEEeccCCc
Q 020796 154 ESW--NSWGSWMEVTVDAGRSWRKYGPIYIPNES--LSVIQ--PVPFHTANRTLRVLMRSFN--GIG-RVCMSESCDGGL 224 (321)
Q Consensus 154 ~~~--~~~~~~~~~S~D~G~tW~~~~~~~~~~~~--~~~~~--~~~~~~~~G~l~~~~r~~~--~~~-~~~~~~S~D~G~ 224 (321)
+.. ..+...+..|+|+|++|..+..+.-.... ..++. -+-+.+.||+|+.-..... +.. ..++.+|.|+|+
T Consensus 81 ~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~ 160 (310)
T PF13859_consen 81 RSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGK 160 (310)
T ss_dssp S--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTS
T ss_pred ccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCcc
Confidence 211 24567788999999999987644211100 01111 1234678999887665432 222 346678999999
Q ss_pred CCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcc
Q 020796 225 TWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 225 tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~ 278 (321)
+|..+..+. +.-+..+.++.-.+|+|+|+.... ...-.++.|.|-|.||++.
T Consensus 161 ~W~lskg~s-~~gC~~psv~EWe~gkLlM~~~c~-~g~rrVYeS~DmG~tWtea 212 (310)
T PF13859_consen 161 TWKLSKGMS-PAGCSDPSVVEWEDGKLLMMTACD-DGRRRVYESGDMGTTWTEA 212 (310)
T ss_dssp S-EE-S-----TT-EEEEEEEE-TTEEEEEEE-T-TS---EEEESSTTSS-EE-
T ss_pred ceEeccccC-CCCcceEEEEeccCCeeEEEEecc-cceEEEEEEcccceehhhc
Confidence 999765432 233344566766789999997643 1223689999999999874
|
|
| >cd08984 GH43_5 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-06 Score=75.60 Aligned_cols=217 Identities=16% Similarity=0.173 Sum_probs=127.5
Q ss_pred CCCeEEEEeC-CCcEEEEEEeccc--c---CCc----eeEEEEecCCCCCCCCCccCCCC-C----CCCCCCccEEccCC
Q 020796 81 MWNPVLFKLP-SNGLLLFYKIGQE--V---QKW----SGCMKRSYNKGVTWSEREQLPPG-I----LGPSKNKPILLENG 145 (321)
Q Consensus 81 ~~~p~l~~~~-~G~l~l~~~~~~~--~---~~~----~~~~~~S~D~G~TWs~~~~l~~~-~----~g~~~~~~~~~~~G 145 (321)
..+|.++..+ +|+.+|+|+.... . ..| ...++.|+|++.+|+....+... . .....+. +...+|
T Consensus 11 ~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~-v~~~~G 89 (294)
T cd08984 11 AADPTIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPE-VVWHGG 89 (294)
T ss_pred CCCCEEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCce-EEEECC
Confidence 6789988775 5678999863110 0 111 24578888879999866543211 1 1112222 334578
Q ss_pred eEEEeeeccc------CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEe
Q 020796 146 LLLCGSSVES------WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSES 219 (321)
Q Consensus 146 ~~~~~~~~~~------~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S 219 (321)
+.++...... .....+.++.|+| ..+|+...++..+ ..+++.+.++...+|++++++........++++.|
T Consensus 90 ~y~myys~~~~~~~~~~~~~~i~~a~S~D-l~~w~~~~~~~~~--~~~~iD~~vf~~~dg~~yl~y~~~~~~~~~~~a~s 166 (294)
T cd08984 90 VYHMYVTYIPGVPPDWGGPRRIVHYTSPN-LWDWTFVGRVDLD--SDRVIDACVFKLPDGRWRMWYKDERRGSTTYAADS 166 (294)
T ss_pred EEEEEEEecCCCCcccCCCcEEEEEECCC-cCcceECCccccC--CCCcEEeEEEEeCCCEEEEEEECCCCCeEEEEEEC
Confidence 8755422111 1123566778887 5789976644222 23567788887777999999865432345678888
Q ss_pred ccCCcCCCCCccCCCCC-CCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce-eecccC-----CCceece
Q 020796 220 CDGGLTWSYAKPTQLLN-PNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL-TLEENL-----AMEFSYP 292 (321)
Q Consensus 220 ~D~G~tWs~~~~~~~~~-~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~-~l~~~~-----~~~~~yp 292 (321)
.| +.+|+..... ++. ...++.+.+ .+|+.+|++.. ...+.++.|. +-..|++.. ++.... +...++|
T Consensus 167 ~D-~~~w~~~~~~-i~~~~~EgP~v~k-~~g~yym~~~~--~~g~~~~~S~-D~~~W~~~~~~l~~~~~~~~~~~~~~H~ 240 (294)
T cd08984 167 ED-LYHWTVEGPV-LGDRPHEGPNVFR-WKGYYWMIIDE--WKGLGVYRSK-DAENWERQGGILLKPGTRPDDGAKGRHA 240 (294)
T ss_pred CC-CCEEEeCCcc-ccCCCCCCCCeeE-ECCEEEEEEcC--CceEEEEECC-ChhhcEECCeeeccCCCCccccccccCC
Confidence 88 7889874321 111 122344455 36888888743 2235666665 466998754 333211 1234788
Q ss_pred EEEEccCCeEEEEEEe
Q 020796 293 AVIQASDGSVHITYTY 308 (321)
Q Consensus 293 ~~~~~~dg~l~v~y~~ 308 (321)
.+++.+ |+.+++|-.
T Consensus 241 ~i~~~~-~~~y~~Yh~ 255 (294)
T cd08984 241 DVVVTG-DRAYIFYFT 255 (294)
T ss_pred cEEEeC-CEEEEEEEe
Confidence 999855 588888865
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=73.67 Aligned_cols=234 Identities=16% Similarity=0.146 Sum_probs=120.5
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCC--CCcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEe
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGA--PDVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKL 89 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~--~~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~ 89 (321)
...|++..+. .....+.+..+.-..+..+.|.+. +|. ++..+++.+.++| ||...- ....+. .....+.+.+
T Consensus 63 rgtiletdd~--g~tw~qal~~~gr~~f~sv~f~~~-egw~vGe~sqll~T~DgGqsWARi~-~~e~~e-g~~~sI~f~d 137 (339)
T COG4447 63 RGTILETDDG--GITWAQALDFLGRHAFHSVSFLGM-EGWIVGEPSQLLHTTDGGQSWARIP-LSEKLE-GFPDSITFLD 137 (339)
T ss_pred cceEEEecCC--cccchhhhchhhhhheeeeeeecc-cccccCCcceEEEecCCCcchhhch-hhcCCC-CCcceeEEec
Confidence 3455665432 233456666554456777777764 332 2333555666666 998632 222222 1222344444
Q ss_pred C-CCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECC
Q 020796 90 P-SNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVD 168 (321)
Q Consensus 90 ~-~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D 168 (321)
+ .|.++ +. .+.+..++|+|++|+....-..+.. ..+.+..-.||..+... .+..++.|-+
T Consensus 138 ~q~g~m~---------gd-~Gail~T~DgGk~Wk~l~e~~v~~~--~~n~ia~s~dng~vaVg-------~rGs~f~T~~ 198 (339)
T COG4447 138 DQRGEML---------GD-QGAILKTTDGGKNWKALVEKAVGLA--VPNEIARSADNGYVAVG-------ARGSFFSTWG 198 (339)
T ss_pred chhhhhh---------cc-cceEEEecCCcccHhHhcccccchh--hhhhhhhhccCCeEEEe-------cCcceEecCC
Confidence 2 23221 11 3468899999999987553221211 11111122345533321 1235777888
Q ss_pred CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCcc-CCCC-CCCCceeEEEc
Q 020796 169 AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP-TQLL-NPNSGIDGVKL 246 (321)
Q Consensus 169 ~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~-~~~~-~~~~~~~~~~~ 246 (321)
-|++|-.+.. .+. ....|.... .++|.+-++.|... +.. +.+.++|..|++... .+.. .+-+-......
T Consensus 199 aGqt~~~~~g---~~s-~~~letmg~-adag~~g~la~g~q--g~~--f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~ 269 (339)
T COG4447 199 AGQTVWLPHG---RNS-SRRLETMGL-ADAGSKGLLARGGQ--GDQ--FSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPR 269 (339)
T ss_pred CCccEEeccC---CCc-cchhccccc-ccCCccceEEEccc--cce--eecCCCcccccccccchhcccCCCcccccccc
Confidence 9999876531 111 112232222 35676555555532 333 457899999997532 1111 01111223334
Q ss_pred CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeeccc
Q 020796 247 KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEEN 284 (321)
Q Consensus 247 ~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~~ 284 (321)
.+++++++.... .+..|.|+|++|++-.-+.+.
T Consensus 270 a~~~v~v~G~gG-----nvl~StdgG~t~skd~g~~er 302 (339)
T COG4447 270 APPEVWVSGIGG-----NVLASTDGGTTWSKDGGVEER 302 (339)
T ss_pred CCCCeEEeccCc-----cEEEecCCCeeEeccCChhhh
Confidence 567888876432 467799999999976655543
|
|
| >cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-05 Score=67.30 Aligned_cols=203 Identities=14% Similarity=0.141 Sum_probs=116.6
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CC----CCCcEEEEEEeCC--CCcCCcEE-ccCCCC-----CCCCCeEEEEeCC
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EG----APDVKIWLQTFKD--GRWQSPII-ADEEPN-----VPMWNPVLFKLPS 91 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g----~~~~~i~~s~s~~--GtWs~~~~-~~~~~~-----~~~~~p~l~~~~~ 91 (321)
..++.|.++..++|+.++.|..-.. .+ .....|.++.|++ |.|..... +.+.+. ...++|.++.. +
T Consensus 11 ~~~w~~~vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~P~vi~~-~ 89 (291)
T cd08994 11 YSVWGGSIIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHNPTIKRF-D 89 (291)
T ss_pred eEEEecceEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccCCeEEEE-C
Confidence 7788999999998988887654221 11 0123477777775 58986443 333221 24567887665 6
Q ss_pred CcEEEEEEeccc-------cCCceeEEEEecCCCCCCCC-Ccc-CCCCCC-----CCCCCccEEccCCeEEEeeecccCC
Q 020796 92 NGLLLFYKIGQE-------VQKWSGCMKRSYNKGVTWSE-REQ-LPPGIL-----GPSKNKPILLENGLLLCGSSVESWN 157 (321)
Q Consensus 92 G~l~l~~~~~~~-------~~~~~~~~~~S~D~G~TWs~-~~~-l~~~~~-----g~~~~~~~~~~~G~~~~~~~~~~~~ 157 (321)
|+.+++|..... .......+..|++-...|+. ..+ +.++.. +.....++...+|++++........
T Consensus 90 g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~~ 169 (291)
T cd08994 90 GKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTYN 169 (291)
T ss_pred CEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEeccccC
Confidence 999999985321 11223457788774458976 222 222211 1122223333378765542221111
Q ss_pred ----CCcEEEEEECCCCceeEEeeceec--CCCCcceeeeeEEEcCCCeEEEEEeecC-----CCCcEEEEEeccCCcCC
Q 020796 158 ----SWGSWMEVTVDAGRSWRKYGPIYI--PNESLSVIQPVPFHTANRTLRVLMRSFN-----GIGRVCMSESCDGGLTW 226 (321)
Q Consensus 158 ----~~~~~~~~S~D~G~tW~~~~~~~~--~~~~~~~~~~~~~~~~~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tW 226 (321)
.....+++|+|....|+......+ +........|.+... +|+.+|++.... ..+.+.+++|.| |.+|
T Consensus 170 ~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~-~g~yym~~~~~~~~~~~~~~~i~~a~S~D-g~~W 247 (291)
T cd08994 170 PTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYD-KGQFHMIVKDMLGYVTGEKGGGAYFRSKD-GIHW 247 (291)
T ss_pred CCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEEe-CCEEEEEEeecccCcCCCCceEEEEECCC-CCCc
Confidence 123567888887556987531111 112223345777765 489999886543 245788888977 8899
Q ss_pred CCCc
Q 020796 227 SYAK 230 (321)
Q Consensus 227 s~~~ 230 (321)
+...
T Consensus 248 ~~~~ 251 (291)
T cd08994 248 KLAP 251 (291)
T ss_pred eecC
Confidence 8753
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f |
| >cd08984 GH43_5 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-05 Score=67.89 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=119.8
Q ss_pred CCccccceEEEecC-CcEEEEEecCCCCCC-------CCcEEEEEEeCC-C-CcCCcEEccC---CC-CCCCCCeEEEEe
Q 020796 24 FKSCHASTIVEVDK-GHFLVAYFGGSCEGA-------PDVKIWLQTFKD-G-RWQSPIIADE---EP-NVPMWNPVLFKL 89 (321)
Q Consensus 24 ~~~~~~p~l~~~~~-g~l~~~~~~~~~~g~-------~~~~i~~s~s~~-G-tWs~~~~~~~---~~-~~~~~~p~l~~~ 89 (321)
+.-++.|.|+..++ |++++.|..-+.... ....|.+.+|+| + +|+....+.. .. ....+.|.++..
T Consensus 8 ~~g~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~v~~~ 87 (294)
T cd08984 8 YDGAADPTIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPEVVWH 87 (294)
T ss_pred CCCCCCCEEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCceEEEE
Confidence 34468899998874 577776643111111 113588899998 8 9987654321 11 234678988765
Q ss_pred CCCcEEEEEEecccc-----CCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEE
Q 020796 90 PSNGLLLFYKIGQEV-----QKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWME 164 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~-----~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 164 (321)
+|+-+|+|+..... +.....+..|+| ..+|+....+.....+.+.+.++...+|++++....+. .+....+.
T Consensus 88 -~G~y~myys~~~~~~~~~~~~~~i~~a~S~D-l~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~~-~~~~~~~a 164 (294)
T cd08984 88 -GGVYHMYVTYIPGVPPDWGGPRRIVHYTSPN-LWDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDER-RGSTTYAA 164 (294)
T ss_pred -CCEEEEEEEecCCCCcccCCCcEEEEEECCC-cCcceECCccccCCCCcEEeEEEEeCCCEEEEEEECCC-CCeEEEEE
Confidence 79999999863221 112344677887 57897655432111222333344445577665432221 22334566
Q ss_pred EECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-CCC------CC
Q 020796 165 VTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-QLL------NP 237 (321)
Q Consensus 165 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~~~------~~ 237 (321)
.|+| +.+|+...++ +... ..-.|.++.. +|..++++.. ...+.+.+|+|. .+|+....+ ..+ +.
T Consensus 165 ~s~D-~~~w~~~~~~-i~~~--~~EgP~v~k~-~g~yym~~~~---~~g~~~~~S~D~-~~W~~~~~~l~~~~~~~~~~~ 235 (294)
T cd08984 165 DSED-LYHWTVEGPV-LGDR--PHEGPNVFRW-KGYYWMIIDE---WKGLGVYRSKDA-ENWERQGGILLKPGTRPDDGA 235 (294)
T ss_pred ECCC-CCEEEeCCcc-ccCC--CCCCCCeeEE-CCEEEEEEcC---CceEEEEECCCh-hhcEECCeeeccCCCCccccc
Confidence 6665 7899976533 2111 1123666665 5788777532 123556778774 499863321 111 11
Q ss_pred CCc-eeEEEcCCCcEEEEEe
Q 020796 238 NSG-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~~-~~~~~~~~g~~~lv~~ 256 (321)
..+ ..++.. +|+.+++|.
T Consensus 236 ~~~H~~i~~~-~~~~y~~Yh 254 (294)
T cd08984 236 KGRHADVVVT-GDRAYIFYF 254 (294)
T ss_pred cccCCcEEEe-CCEEEEEEE
Confidence 112 234443 478888885
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00011 Score=64.70 Aligned_cols=222 Identities=19% Similarity=0.215 Sum_probs=122.7
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCC-----C-C---CCCCCCCccEEccCCeEEEeeec
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLP-----P-G---ILGPSKNKPILLENGLLLCGSSV 153 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~-----~-~---~~g~~~~~~~~~~~G~~~~~~~~ 153 (321)
+|.++.. +|+.+|+++.....+.....+.+|+| +.+|+....+. + . ..+...+.++...+|++++....
T Consensus 2 DP~i~~~-~g~yyl~~~~~~~~~~~~~~~~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~yt~ 79 (286)
T cd08772 2 DPNLIKY-NGTYYIFFSGDDKNGNPGIAHATSKD-LVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLYYTD 79 (286)
T ss_pred CCeEEEE-CCEEEEEEEccCCCCCceEEEEECCC-cCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEEEEe
Confidence 5776554 68999988753211122234778877 78998766432 1 1 11223334444444876543221
Q ss_pred cc--CCCCcEEEEEECCCCceeEEee--ceec----CCCCcceeeeeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCC
Q 020796 154 ES--WNSWGSWMEVTVDAGRSWRKYG--PIYI----PNESLSVIQPVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGG 223 (321)
Q Consensus 154 ~~--~~~~~~~~~~S~D~G~tW~~~~--~~~~----~~~~~~~~~~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G 223 (321)
.. .....+.++.|+|....|+... ++.. ......++.|.++..++|+.++++.... ..+.+++++|+| +
T Consensus 80 ~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~~~~~~~~~~i~~~~s~d-~ 158 (286)
T cd08772 80 VSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFGSGDHHNFGGIFLYESDD-D 158 (286)
T ss_pred ecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEccccCCCCCeEEEEEcCC-C
Confidence 11 1234677888988777777542 1111 0112345678888887799999886542 235788899987 5
Q ss_pred cCCCCCccC--CC----CCCCCceeEEEcCCCcEEEEEeCC------CCCeEEEEEEcCCCCCCCcce------eecc-c
Q 020796 224 LTWSYAKPT--QL----LNPNSGIDGVKLKDGRLLLAYNTV------SRGVLKVALSKDDGDSWHDAL------TLEE-N 284 (321)
Q Consensus 224 ~tWs~~~~~--~~----~~~~~~~~~~~~~~g~~~lv~~~~------~r~~l~~~~S~D~G~tW~~~~------~l~~-~ 284 (321)
.+|...... .. .....+..+... +|+.+|++... ....+.+++|++....|.... .... .
T Consensus 159 ~~w~~~~~~~~~~~~~~~~~~E~P~~~~~-~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 237 (286)
T cd08772 159 TTWKKGSAELLISEGEGGKQIEGPGLLKK-NGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPKSDTSGGLSLTGGN 237 (286)
T ss_pred CCcccccceeeEeeccCCCceeccEEEEE-CCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccCCCCCCcccccccc
Confidence 678653321 00 011112344443 58888888542 234667788876555675432 1111 1
Q ss_pred -CCCceeceEEEEccCCeEEEEEEe
Q 020796 285 -LAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 285 -~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
...++..+.+++..+|+.+++|-.
T Consensus 238 ~~~~~~~~~~~~~~~~g~~~~~~~~ 262 (286)
T cd08772 238 DGGVGPYHAAAFNDAGGRVVLVYHA 262 (286)
T ss_pred CCCCCCCccEEEECCCCCEEEEEEe
Confidence 112344556666566777766544
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 |
| >cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00014 Score=64.47 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=127.9
Q ss_pred CCCCCCCeEEEEeCCCcEEEEEEecccc---CCc----eeEEEEecCCCCCCCCCcc-CCCCCCCC-----CCCccEEcc
Q 020796 77 PNVPMWNPVLFKLPSNGLLLFYKIGQEV---QKW----SGCMKRSYNKGVTWSEREQ-LPPGILGP-----SKNKPILLE 143 (321)
Q Consensus 77 ~~~~~~~p~l~~~~~G~l~l~~~~~~~~---~~~----~~~~~~S~D~G~TWs~~~~-l~~~~~g~-----~~~~~~~~~ 143 (321)
+....+.|.++..++|+.+|||+..... ..| ...++.|+|.-..|+.... +.++..+. +..+.+...
T Consensus 9 ~~~~~w~~~vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~~P~vi~~ 88 (291)
T cd08994 9 EDYSVWGGSIIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTHNPTIKRF 88 (291)
T ss_pred CCeEEEecceEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCccCCeEEEE
Confidence 5667888999888889999999852211 111 2457788886567975443 33221111 122223334
Q ss_pred CCeEEEeeeccc--------CCCCcEEEEEECCCCceeEE-eeceecCC----CCcceeeeeEEEcCCCeEEEEEeecC-
Q 020796 144 NGLLLCGSSVES--------WNSWGSWMEVTVDAGRSWRK-YGPIYIPN----ESLSVIQPVPFHTANRTLRVLMRSFN- 209 (321)
Q Consensus 144 ~G~~~~~~~~~~--------~~~~~~~~~~S~D~G~tW~~-~~~~~~~~----~~~~~~~~~~~~~~~G~l~~~~r~~~- 209 (321)
+|+.++...... .....+.++.|++-...|+. ..++..+. ...+...|.++..++|+++|+++...
T Consensus 89 ~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~~m~y~g~~~ 168 (291)
T cd08994 89 DGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSYLLVYKGGTY 168 (291)
T ss_pred CCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCEEEEEecccc
Confidence 688654322111 11235778888875558988 34443221 12234567887766899999886542
Q ss_pred ----CCCcEEEEEeccCCcCCCCCccCCC--CCC---CCceeEEEcCCCcEEEEEeCC------CCCeEEEEEEcCCCCC
Q 020796 210 ----GIGRVCMSESCDGGLTWSYAKPTQL--LNP---NSGIDGVKLKDGRLLLAYNTV------SRGVLKVALSKDDGDS 274 (321)
Q Consensus 210 ----~~~~~~~~~S~D~G~tWs~~~~~~~--~~~---~~~~~~~~~~~g~~~lv~~~~------~r~~l~~~~S~D~G~t 274 (321)
....+.++.|.|....|+......+ +.. .....+.. .+|+.+|++... .+..+.++.|. ||.+
T Consensus 169 ~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~-~~g~yym~~~~~~~~~~~~~~~i~~a~S~-Dg~~ 246 (291)
T cd08994 169 NPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWY-DKGQFHMIVKDMLGYVTGEKGGGAYFRSK-DGIH 246 (291)
T ss_pred CCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEE-eCCEEEEEEeecccCcCCCCceEEEEECC-CCCC
Confidence 1234677888887566976421111 111 11123344 459999998643 24566777775 5889
Q ss_pred CCcceeec--------cc---CCCceeceEEEEccCCeEEEEE
Q 020796 275 WHDALTLE--------EN---LAMEFSYPAVIQASDGSVHITY 306 (321)
Q Consensus 275 W~~~~~l~--------~~---~~~~~~yp~~~~~~dg~l~v~y 306 (321)
|+....+. ++ ......-|.+.+..||+-.++|
T Consensus 247 W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~g~~~~l~ 289 (291)
T cd08994 247 WKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDEDGKPTYLF 289 (291)
T ss_pred ceecCcceeeeeEEcCCCcccccccccCCEEEEcCCCCEEEEe
Confidence 98765441 11 1123455777744556544444
|
This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f |
| >cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00034 Score=61.68 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=100.6
Q ss_pred ceEEEecCCcEEEEEecCCCCCC---CCcEEEEEEeCCC-CcCCcE-EccCCC----CCCCCCeEEEEeCCCcEEEEEEe
Q 020796 30 STIVEVDKGHFLVAYFGGSCEGA---PDVKIWLQTFKDG-RWQSPI-IADEEP----NVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 30 p~l~~~~~g~l~~~~~~~~~~g~---~~~~i~~s~s~~G-tWs~~~-~~~~~~----~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
|+++... |++++.|........ ....+...+|+|+ +|+... .+...+ ...++.|.++.. +|+++|+|+.
T Consensus 3 ~~~~~~~-G~yhlfyq~~p~~~~~~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs~~~~-~g~~~l~YTg 80 (280)
T cd08995 3 PMPFYDD-GTFHIFYLHDPRNGPPEGLRHPWSLLTTKDLVNYEDHGEAIPRGGDEDDDDAIGTGSVIKG-EGTYHAFYTG 80 (280)
T ss_pred ccceEEC-CEEEEEEEcCCCCCCcccCCceEEEEEccCcCccEECcceecCCCCcccccCceEeEEEee-CCEEEEEEEE
Confidence 5665544 888887755433221 3345778899999 998643 333211 234667877654 6999999985
Q ss_pred cccc--CCceeEEEEecCCCCCCCCCc--cCCCCCCC----CCCCccEEcc--CCeEEEeeeccc-----CCCCcEEEEE
Q 020796 101 GQEV--QKWSGCMKRSYNKGVTWSERE--QLPPGILG----PSKNKPILLE--NGLLLCGSSVES-----WNSWGSWMEV 165 (321)
Q Consensus 101 ~~~~--~~~~~~~~~S~D~G~TWs~~~--~l~~~~~g----~~~~~~~~~~--~G~~~~~~~~~~-----~~~~~~~~~~ 165 (321)
.... ......++.|+| |.+|++.. ++.+...+ ..+.+.+... +|++++...... .....+.++.
T Consensus 81 ~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~~~ 159 (280)
T cd08995 81 HNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIALFT 159 (280)
T ss_pred ECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEEEE
Confidence 3221 122356788887 58998653 22211111 1222223222 477654322111 1112344455
Q ss_pred ECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCC
Q 020796 166 TVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 166 S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~ 228 (321)
| ++..+|+...++..+. .....| |.++.+ +|+.++++..........+.++.+-...|..
T Consensus 160 S-~Dl~~W~~~~~~~~~~-~~~~~E~P~l~~~-~g~~~L~~s~~~~~~~~~Y~~~~~~~g~~~~ 220 (280)
T cd08995 160 S-KDLKNWEYEEPFYAPG-LYFMPECPDLFKM-GDWWYLVYSEFSENRKTHYRVSKSPFGPWRA 220 (280)
T ss_pred e-CCcCcceecCceecCC-CcceeecceEEEE-CCEEEEEEEeccCCCcEEEEEeCCCCCCeEc
Confidence 5 5688998775442221 112233 677777 4777777754432233344455433233443
|
This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a |
| >cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00041 Score=61.00 Aligned_cols=196 Identities=12% Similarity=0.147 Sum_probs=110.5
Q ss_pred cceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-cc----CC---CCCCCCCeEEEEeCCCcEEEEEE
Q 020796 29 ASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-AD----EE---PNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~----~~---~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
.|.|+... |+.++.+..... + ....+.+.+|+|+ +|+.... +. +. .....+.|.++..++|+.+|+|+
T Consensus 2 DP~i~~~~-g~yyl~~~~~~~-~-~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~yt 78 (286)
T cd08772 2 DPNLIKYN-GTYYIFFSGDDK-N-GNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLYYT 78 (286)
T ss_pred CCeEEEEC-CEEEEEEEccCC-C-CCceEEEEECCCcCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEEEE
Confidence 57877654 888876644321 1 2345788999998 9997543 21 11 12357789888776699999998
Q ss_pred eccc-cCCceeEEEEecCCCCCCCCCcc--C-CC---C--CCCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCC
Q 020796 100 IGQE-VQKWSGCMKRSYNKGVTWSEREQ--L-PP---G--ILGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDA 169 (321)
Q Consensus 100 ~~~~-~~~~~~~~~~S~D~G~TWs~~~~--l-~~---~--~~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~ 169 (321)
.... .......+..|+|....|+.... + .. . ....+-+.++...+|++++...... .....+.++.|+|.
T Consensus 79 ~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~~~~~~~~~~i~~~~s~d~ 158 (286)
T cd08772 79 DVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFGSGDHHNFGGIFLYESDDD 158 (286)
T ss_pred eecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEccccCCCCCeEEEEEcCCC
Confidence 6422 12234568889887777775421 1 11 0 1111222233444488766532211 01235667777764
Q ss_pred CceeEEeece--ecCCCCcceee-eeEEEcCCCeEEEEEeecC-----CCCcEEEEEeccCCcCCCCC
Q 020796 170 GRSWRKYGPI--YIPNESLSVIQ-PVPFHTANRTLRVLMRSFN-----GIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 170 G~tW~~~~~~--~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tWs~~ 229 (321)
.+|....+. .......+..| |.++.. +|+.++++.... ....+.+++|++....|...
T Consensus 159 -~~w~~~~~~~~~~~~~~~~~~E~P~~~~~-~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~ 224 (286)
T cd08772 159 -TTWKKGSAELLISEGEGGKQIEGPGLLKK-NGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPK 224 (286)
T ss_pred -CCcccccceeeEeeccCCCceeccEEEEE-CCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccC
Confidence 677654432 11111122333 566665 578888775432 13467788888877777654
|
Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 |
| >cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00038 Score=61.04 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCc--cC-CC-CC---CCCCCCccEEccCCeEEEeeeccc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE--QL-PP-GI---LGPSKNKPILLENGLLLCGSSVES 155 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~--~l-~~-~~---~g~~~~~~~~~~~G~~~~~~~~~~ 155 (321)
||.++.. +|+.+++|+...........+.+|+| |.+|+... .+ ++ .. ...+..+-+...+|++++......
T Consensus 2 nP~v~~~-~G~y~l~y~~~~~~~~~~ig~A~S~D-g~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~~g~y~m~Yta~~ 79 (268)
T cd08993 2 NPAVVYD-NGEFYLLYRAAGNDGVIRLGLARSRD-GLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKIDDTYYITYAARP 79 (268)
T ss_pred cCeEEEE-CCEEEEEEEEECCCCceEEEEEEECC-CceEEECCcceEcCCCCCcccccCccCcEEEEECCEEEEEEEccC
Confidence 5766654 89999999853222222345788988 78997532 12 21 11 111233333445777654322211
Q ss_pred --CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEE-cCCCeEEEEEeecC----CCCcEEEEEeccCCcCCCC
Q 020796 156 --WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFH-TANRTLRVLMRSFN----GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 156 --~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~-~~~G~l~~~~r~~~----~~~~~~~~~S~D~G~tWs~ 228 (321)
.....+.++.|+| +.+|+..... ..+... .+.+.. .-+|+.+|++|... ....++++.|+| +.+|+.
T Consensus 80 ~~~~~~~i~lA~S~D-~~~W~~~~~~-~~~~~~---d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~D-l~~W~~ 153 (268)
T cd08993 80 NAPNGTRIGLATTKD-FITFERLGTS-LVPNNR---DGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPD-LVHWGN 153 (268)
T ss_pred CCCCCcEEEEEEeCC-cceEEEeccc-CCCCCC---CEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCC-cCccCC
Confidence 1234577888876 7899986532 222111 122222 12689999987542 246899999988 789987
Q ss_pred Ccc
Q 020796 229 AKP 231 (321)
Q Consensus 229 ~~~ 231 (321)
...
T Consensus 154 ~~~ 156 (268)
T cd08993 154 HRF 156 (268)
T ss_pred CeE
Confidence 543
|
This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00041 Score=61.74 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=95.7
Q ss_pred EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCCc-EEccCC---CCCCCCCeEEEEeCCCcEEEEEEeccc--
Q 020796 32 IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQSP-IIADEE---PNVPMWNPVLFKLPSNGLLLFYKIGQE-- 103 (321)
Q Consensus 32 l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~~-~~~~~~---~~~~~~~p~l~~~~~G~l~l~~~~~~~-- 103 (321)
|+. .+|+.++.|.-... .....+....++|+|. +|+.. ..+.+. .......++++.+.+|+++++|+....
T Consensus 9 ~~~-~~G~yhlfyq~~p~~~~~~~~~wgha~S~Dlv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~YTg~~~~~ 87 (298)
T cd08996 9 LVY-FNGKYHLFYQYNPFGPVWGNMHWGHATSKDLVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLFYTGNVKLD 87 (298)
T ss_pred eeE-ECCEEEEEEcCCCCCCCCCCcEEEEEEecCccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEEEeceeCCC
Confidence 443 45888886643322 1123456778899998 99974 334321 122455677666655899999985321
Q ss_pred -cCCceeEEEEecCCCCCCCCCccCC----CCC-CCCCCCccEEccCCeEEEeeecccC-CCCcEEEEEECCCCceeEEe
Q 020796 104 -VQKWSGCMKRSYNKGVTWSEREQLP----PGI-LGPSKNKPILLENGLLLCGSSVESW-NSWGSWMEVTVDAGRSWRKY 176 (321)
Q Consensus 104 -~~~~~~~~~~S~D~G~TWs~~~~l~----~~~-~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~ 176 (321)
.......+++|+|+|.+|++....+ +.. ....+.+-+...+|++++....... ....+.++.| +++.+|+..
T Consensus 88 ~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~g~~~m~~g~~~~~~~~~i~ly~S-~Dl~~W~~~ 166 (298)
T cd08996 88 GGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHDGKWYMVLGAGTEDGTGRILLYRS-DDLKNWEYL 166 (298)
T ss_pred CCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeECCEEEEEEEEEecCCCcEEEEEEC-CCCCCCEEc
Confidence 1223456889999999998754321 111 1113333344445777554222111 1223445555 568999987
Q ss_pred ecee-cCCCCccee-eeeEEEcCC-CeEEEEEeec
Q 020796 177 GPIY-IPNESLSVI-QPVPFHTAN-RTLRVLMRSF 208 (321)
Q Consensus 177 ~~~~-~~~~~~~~~-~~~~~~~~~-G~l~~~~r~~ 208 (321)
.++. ..+..-... .|.++.+.+ |+.++++...
T Consensus 167 ~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~ 201 (298)
T cd08996 167 GELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQ 201 (298)
T ss_pred ceecccCCCccceEeCCcEEEECCCCeEEEEECCC
Confidence 6442 111111222 367777753 6777766544
|
Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal |
| >cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00064 Score=59.57 Aligned_cols=175 Identities=13% Similarity=0.158 Sum_probs=94.3
Q ss_pred ccceEEEecCCcEEEEEecCCCCC--CCCcEEEEEEeCCC-CcCCcEE-c--cCCC---CCCCCCeEEEEeCCCcEEEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEG--APDVKIWLQTFKDG-RWQSPII-A--DEEP---NVPMWNPVLFKLPSNGLLLFY 98 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g--~~~~~i~~s~s~~G-tWs~~~~-~--~~~~---~~~~~~p~l~~~~~G~l~l~~ 98 (321)
..|.++. |++++.|....... .....+.+++|+|+ +|+.... + .+.+ ....+.|.++...+|+.+++|
T Consensus 7 ~~~~~~~---g~yhlfy~~~~~~~~~~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Y 83 (276)
T cd08979 7 FNPAVVV---GKYHLFYLAAPRGGGDGNTSRIGAASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFY 83 (276)
T ss_pred cCCceEe---eeEEEEEEccCcCcCCCCcceeEEEEcCCCCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEE
Confidence 3455543 77888765543321 11334778999999 9997543 3 1111 235678888777669999999
Q ss_pred Eeccc--cCCceeEEEEecCCCCCCCCCccCC-------C--C--CCCCCCCccEEccC--CeEEEeeecccC-CCCcEE
Q 020796 99 KIGQE--VQKWSGCMKRSYNKGVTWSEREQLP-------P--G--ILGPSKNKPILLEN--GLLLCGSSVESW-NSWGSW 162 (321)
Q Consensus 99 ~~~~~--~~~~~~~~~~S~D~G~TWs~~~~l~-------~--~--~~g~~~~~~~~~~~--G~~~~~~~~~~~-~~~~~~ 162 (321)
+.... .......++.|+| +.+|+...... . . .....+.+.+...+ |.+++....... ....+.
T Consensus 84 t~~~~~~~~~~~i~~A~S~D-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~~i~ 162 (276)
T cd08979 84 TGYDRPKGAVQRIGLATSKD-LIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIG 162 (276)
T ss_pred ecccCCCCCcceEEEEECCC-CCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCcEEE
Confidence 85321 2223455777876 68898765331 0 0 00112222333333 776553222111 123455
Q ss_pred EEEECCCCceeEEeecee--cCCCCcce-eeeeEEEcCCCeEEEEEeec
Q 020796 163 MEVTVDAGRSWRKYGPIY--IPNESLSV-IQPVPFHTANRTLRVLMRSF 208 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~--~~~~~~~~-~~~~~~~~~~G~l~~~~r~~ 208 (321)
++.|+ ++.+|+....+. ..+..... ..|.++..+ |..++++...
T Consensus 163 ~a~S~-D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~-g~~~l~~~~~ 209 (276)
T cd08979 163 LATSP-DLIHWTPVPPPPGPRTGYDDGQLEVPQVVKID-GRWYLLYSGR 209 (276)
T ss_pred EEECC-CCCcceECCCCCCCCCcccCCcCccceEEEEC-CEEEEEEEec
Confidence 55554 579999866431 11111111 236777664 7888877654
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta |
| >smart00602 VPS10 VPS10 domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0012 Score=64.70 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=101.0
Q ss_pred EeCCC-CcCCcEEccCCCCCC-CCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCcc-CCCCCCCCCCC
Q 020796 61 TFKDG-RWQSPIIADEEPNVP-MWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQ-LPPGILGPSKN 137 (321)
Q Consensus 61 ~s~~G-tWs~~~~~~~~~~~~-~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~-l~~~~~g~~~~ 137 (321)
.|.|| +|........ .... ...-.++...+|.|+|...... ....+.+..|+.+|.+++.... +.....|.+.=
T Consensus 197 VS~Dg~~f~~a~~P~~-~~i~~~~~ytildss~~~vfl~V~~~~--~~~~g~ly~Sds~G~~F~~sl~~~~~~~~g~vDf 273 (612)
T smart00602 197 VSNDRSTFAMAKFPKY-HALGKQQAYTILDSDEDSVFLHVSENN--QNDTGNLYISDSRGTKFSLSLENVNRYTGGYIDF 273 (612)
T ss_pred EECCCCcceEEeCCCC-cccCccccEEEEecCCCcEEEEEecCC--CCceeEEEEECCCCCEEEEehhhhccCCCceeeE
Confidence 34455 8987664322 1111 1123455557899988754311 2234568899999999986321 11111111000
Q ss_pred ccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeec-ee-cCCCCcceee-----eeE------EEc--------
Q 020796 138 KPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGP-IY-IPNESLSVIQ-----PVP------FHT-------- 196 (321)
Q Consensus 138 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~-~~-~~~~~~~~~~-----~~~------~~~-------- 196 (321)
..+.--+|..+...... ......-.+|-|+|.+|+...+ .. ..+....|.- .++ .+.
T Consensus 274 ~kv~~l~Gv~ian~~~~--~~~~~~t~ITfd~G~~W~~l~~p~~d~~g~~~~C~~~~~~~CsLhl~~~~~~~~~~~~~~s 351 (612)
T smart00602 274 YKVEGLKGIYIANIVSK--VDKQLQTKITFDKGGDWSLLKPPDVDNEGKKFNCDLTSLEKCSLHLHLRYSESPYSGDIAS 351 (612)
T ss_pred EEecCcceEEEEEEecc--cccceEEEEEecCCCceEccCCCCcccCCCccCCCCCCCCCcEEEEeecccccCCCCcccc
Confidence 00111134333222110 1224556889999999996542 11 1121221110 011 000
Q ss_pred ---CCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcC
Q 020796 197 ---ANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKD 270 (321)
Q Consensus 197 ---~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D 270 (321)
..|-++++..... .....-...|.|+|.||...... + ......+.|-++++..... ..-.+.+|.|
T Consensus 352 s~~apGii~~~GnvG~~L~~~~~~~tfiS~DgG~tW~~~~~~----~---~~~~~gD~G~iivav~~~~-~t~~i~YS~d 423 (612)
T smart00602 352 SKSAPGIIIASGNVGDGLASYWEPSTFISSDGGLTWRLVFDG----P---HLYAYGDHGGIIVAIEYNS-PTNELKYSTD 423 (612)
T ss_pred cCCCCeEEEEECcccccccccCCCCEEEEcCCCcchHhhcCC----c---eeEEecCCccEEEEEcCCC-CccEEEEECC
Confidence 1132233222211 01122334588999999986531 1 2233445677777664332 2237889999
Q ss_pred CCCCCCccee
Q 020796 271 DGDSWHDALT 280 (321)
Q Consensus 271 ~G~tW~~~~~ 280 (321)
+|+||....+
T Consensus 424 ~G~tW~~~~~ 433 (612)
T smart00602 424 EGKTWKTYTF 433 (612)
T ss_pred CCCceeEeec
Confidence 9999987654
|
|
| >cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0024 Score=55.95 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=88.0
Q ss_pred CcEEEEEEeccccCC----ceeEEEEecCCCCCCCCCccCC-C---C---CCCCCCCccEEccCCeEEEeeeccc---CC
Q 020796 92 NGLLLFYKIGQEVQK----WSGCMKRSYNKGVTWSEREQLP-P---G---ILGPSKNKPILLENGLLLCGSSVES---WN 157 (321)
Q Consensus 92 G~l~l~~~~~~~~~~----~~~~~~~S~D~G~TWs~~~~l~-~---~---~~g~~~~~~~~~~~G~~~~~~~~~~---~~ 157 (321)
|+.+|||........ ....+.+|+| +.+|+....+. . + ..+...+.++...+|++++...... ..
T Consensus 14 g~yhlfy~~~~~~~~~~~~~~~~~a~S~D-~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Yt~~~~~~~~ 92 (276)
T cd08979 14 GKYHLFYLAAPRGGGDGNTSRIGAASSDD-GTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFYTGYDRPKGA 92 (276)
T ss_pred eeEEEEEEccCcCcCCCCcceeEEEEcCC-CCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEEecccCCCCC
Confidence 788999985433221 1234566655 89998765422 1 1 1122233344443377654322111 11
Q ss_pred CCcEEEEEECCCCceeEEeeceec--------C--CCCcceeeeeEEEcCC-CeEEEEEeecC--CCCcEEEEEeccCCc
Q 020796 158 SWGSWMEVTVDAGRSWRKYGPIYI--------P--NESLSVIQPVPFHTAN-RTLRVLMRSFN--GIGRVCMSESCDGGL 224 (321)
Q Consensus 158 ~~~~~~~~S~D~G~tW~~~~~~~~--------~--~~~~~~~~~~~~~~~~-G~l~~~~r~~~--~~~~~~~~~S~D~G~ 224 (321)
...+.++.|+| +.+|+....... . ........|.++..++ |+.+|++.... ..+.+.++.|.| +.
T Consensus 93 ~~~i~~A~S~D-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~~~i~~a~S~D-~~ 170 (276)
T cd08979 93 VQRIGLATSKD-LIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADERGAIGLATSPD-LI 170 (276)
T ss_pred cceEEEEECCC-CCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCCcEEEEEECCC-CC
Confidence 23456777775 788988653210 0 1122345677777665 88888886543 246788888877 78
Q ss_pred CCCCCccC--CCCCC----CCceeEEEcCCCcEEEEEeCC
Q 020796 225 TWSYAKPT--QLLNP----NSGIDGVKLKDGRLLLAYNTV 258 (321)
Q Consensus 225 tWs~~~~~--~~~~~----~~~~~~~~~~~g~~~lv~~~~ 258 (321)
+|+..... ..... -..+.+.++ +|+.+|++...
T Consensus 171 ~W~~~~~~~~~~~~~~~~~~e~P~~~~~-~g~~~l~~~~~ 209 (276)
T cd08979 171 HWTPVPPPPGPRTGYDDGQLEVPQVVKI-DGRWYLLYSGR 209 (276)
T ss_pred cceECCCCCCCCCcccCCcCccceEEEE-CCEEEEEEEec
Confidence 99865432 11110 012344454 48888888643
|
This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta |
| >cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0027 Score=55.35 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=121.0
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC------CC--CCCCCCccEEccCCeEEEeeecc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP------GI--LGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~------~~--~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
+|.++.. +|+.+++++.... ......+.+|+| +..|+....+.. .. .+....+-+...+|++++.....
T Consensus 2 DP~v~~~-~~~yyl~~t~~~~-~~~~i~i~~S~D-l~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~~g~yyl~y~~~ 78 (271)
T cd08978 2 DPYILRY-NGKYYLYGSTDDA-AGPGVQVWSSKD-LVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYYEGKYYLYYSVS 78 (271)
T ss_pred CCcEEEE-CCEEEEEEecCCc-CCCcEEEEECCc-cCCcEECCcccccccccCCcccCCceeCCeEEEECCEEEEEEEcc
Confidence 5777665 6788888764211 111235667776 789987665421 11 11122222334468876543322
Q ss_pred c--CCCCcEEEEEECCCCceeEEeec-eecCCCCcceeeeeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCC
Q 020796 155 S--WNSWGSWMEVTVDAGRSWRKYGP-IYIPNESLSVIQPVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 155 ~--~~~~~~~~~~S~D~G~tW~~~~~-~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~ 228 (321)
. .....+.++.|+| ...|..... ..........+.|.++..++|+.++++.... ..+.++++++.+....+..
T Consensus 79 ~~~~~~~~i~~a~s~d-~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 157 (271)
T cd08978 79 DFDYNGSGIGVATSED-PTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAGFGGIYISELTDDLTKPTG 157 (271)
T ss_pred cCCCCcccEEEEECCC-CCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCCCCcEEEEEECcccccccC
Confidence 1 1234566676655 555544210 0111222356678888888899999886542 1357888888887666543
Q ss_pred CccC---C-CC-CCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCccee-----eccc--CCCceece
Q 020796 229 AKPT---Q-LL-NPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDALT-----LEEN--LAMEFSYP 292 (321)
Q Consensus 229 ~~~~---~-~~-~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~~-----l~~~--~~~~~~yp 292 (321)
...+ . .. ....+..+.. .+|..+|++... ....+.+++|.+-.-.|..... +... .....++.
T Consensus 158 ~~~~~~~~~~~~~~~EgP~~~k-~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~~gh~ 236 (271)
T cd08978 158 PPVLSASSGNNNAVTEGPTIFK-KNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVGLGHG 236 (271)
T ss_pred CceeeeeeccCCCceEccEEEE-ECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCccccCCCc
Confidence 2210 0 00 0111233444 458899988643 2345677777654445665321 1111 11245667
Q ss_pred EEEEccCCeEEEEEEeCC
Q 020796 293 AVIQASDGSVHITYTYNR 310 (321)
Q Consensus 293 ~~~~~~dg~l~v~y~~~~ 310 (321)
.++..++|..+++|...+
T Consensus 237 ~~~~~~~g~~~~~yh~~~ 254 (271)
T cd08978 237 SVVRDKNGEWYLVYHAYN 254 (271)
T ss_pred eEEECCCCCEEEEEEeec
Confidence 788877788888887653
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma |
| >cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0052 Score=54.27 Aligned_cols=223 Identities=16% Similarity=0.086 Sum_probs=121.9
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCC-C----CCCCCCccEEccCCeEEEeeecc
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPG-I----LGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-~----~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
...+|.++.. +|+-+++.+... .....+.+|+| ..+|+....+.+. . .+....+.+...+|++++.....
T Consensus 7 ~~~DP~i~~~-~g~yy~~~t~~~---~~~i~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~waP~v~~~~g~y~~~y~~~ 81 (287)
T cd08999 7 DFPDPSVIRV-DGTYYAYATNGN---GPNVPIATSTD-LVNWTYLGDAFPKLPRWWTGGDFWAPDVSYVNGKYVLYYSAR 81 (287)
T ss_pred CCCCCeEEEE-CCEEEEEEeCCC---CCcEEEEECCC-CCCcEECCcccCCCCCcccCCCccCceEEEECCEEEEEEEee
Confidence 3467888776 788888766421 12334677777 7899866543221 1 11122222344568865542221
Q ss_pred cC--CCCcEEEEEECCCCceeEEeeceec--CCCCcceeeeeEEEcCCCeEEEEEeecCC----CCcEEEEEeccCCcCC
Q 020796 155 SW--NSWGSWMEVTVDAGRSWRKYGPIYI--PNESLSVIQPVPFHTANRTLRVLMRSFNG----IGRVCMSESCDGGLTW 226 (321)
Q Consensus 155 ~~--~~~~~~~~~S~D~G~tW~~~~~~~~--~~~~~~~~~~~~~~~~~G~l~~~~r~~~~----~~~~~~~~S~D~G~tW 226 (321)
.. ....+.++.|+|-.-.|+......+ +......+.|.++..+||+.++++..... ...+++++...++.+|
T Consensus 82 ~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~~~~~~~~i~~~~ls~d~~~~ 161 (287)
T cd08999 82 DKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGNSIGKPTPIYLQELSADGLTL 161 (287)
T ss_pred cCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCCCCCCCceEEEEEeCCCCccc
Confidence 11 1234567778775457876543221 12223456788888778999888754321 1236665433447888
Q ss_pred CCCc-cC-C--C--CC-CCCceeEEEcCCCcEEEEEeCC----C--CCeEEEEEEcCCCCCCCcce--eecc--cCC--C
Q 020796 227 SYAK-PT-Q--L--LN-PNSGIDGVKLKDGRLLLAYNTV----S--RGVLKVALSKDDGDSWHDAL--TLEE--NLA--M 287 (321)
Q Consensus 227 s~~~-~~-~--~--~~-~~~~~~~~~~~~g~~~lv~~~~----~--r~~l~~~~S~D~G~tW~~~~--~l~~--~~~--~ 287 (321)
.... .+ . . .. ...+..+.. .+|+.+|++... . ...+.++.|.+--..|.+.. ++.. ... .
T Consensus 162 ~~~~~~i~~~~~~~~~~~~EgP~i~k-~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~~~~ 240 (287)
T cd08999 162 TGEPVRLLRNDEDWEGPLVEAPYLVK-RGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNGRWV 240 (287)
T ss_pred cCCcEeeecccccccCCceEeeEEEE-ECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCCeEE
Confidence 6432 11 0 0 00 111233444 479999988542 2 45667788876444687642 2221 111 1
Q ss_pred ceeceEEEEccCCeEEEEEEe
Q 020796 288 EFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 288 ~~~yp~~~~~~dg~l~v~y~~ 308 (321)
+-++..++..++|..+++|-.
T Consensus 241 g~gh~~~~~~~~g~~~~~yh~ 261 (287)
T cd08999 241 GPGHNTVVTDDDGRDWLLYHA 261 (287)
T ss_pred cCCCCeEEECCCCCEEEEEEE
Confidence 235778888778888888754
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0023 Score=56.95 Aligned_cols=214 Identities=19% Similarity=0.218 Sum_probs=112.3
Q ss_pred CCCcEEEEEEeccccCCc---eeEEEEecCCCCCCCCCcc-CCC-C---CCCCCCCccEEccCCeEEEeeeccc-----C
Q 020796 90 PSNGLLLFYKIGQEVQKW---SGCMKRSYNKGVTWSEREQ-LPP-G---ILGPSKNKPILLENGLLLCGSSVES-----W 156 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~---~~~~~~S~D~G~TWs~~~~-l~~-~---~~g~~~~~~~~~~~G~~~~~~~~~~-----~ 156 (321)
.+|+.+|||+.......+ .-..++|+| ..+|+.... +.+ . ..|...+.++...+|++++. |... .
T Consensus 12 ~~G~yhlfyq~~p~~~~~~~~~wgha~S~D-lv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~-YTg~~~~~~~ 89 (298)
T cd08996 12 FNGKYHLFYQYNPFGPVWGNMHWGHATSKD-LVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLF-YTGNVKLDGG 89 (298)
T ss_pred ECCEEEEEEcCCCCCCCCCCcEEEEEEecC-ccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEE-EeceeCCCCC
Confidence 378999999753322111 223578887 799987543 222 1 12233344444333775443 2211 1
Q ss_pred CCCcEEEEEECCCCceeEEeeceec----CCCCcceeeeeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc
Q 020796 157 NSWGSWMEVTVDAGRSWRKYGPIYI----PNESLSVIQPVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 157 ~~~~~~~~~S~D~G~tW~~~~~~~~----~~~~~~~~~~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~ 230 (321)
......+++|+|+|.+|++...... .........|.++..+ |+.+|++.... ..+.+.+.+|.| +.+|+...
T Consensus 90 ~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~-g~~~m~~g~~~~~~~~~i~ly~S~D-l~~W~~~~ 167 (298)
T cd08996 90 RRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD-GKWYMVLGAGTEDGTGRILLYRSDD-LKNWEYLG 167 (298)
T ss_pred ceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC-CEEEEEEEEEecCCCcEEEEEECCC-CCCCEEcc
Confidence 1234678899999999998652211 1112334567777654 88877765432 246777788877 88998654
Q ss_pred cC--CCCCCC---CceeEEEcCC-CcEEEEEeCCCC------CeEEEEEEcCCCCCCCc----ceeecccCCCceeceE-
Q 020796 231 PT--QLLNPN---SGIDGVKLKD-GRLLLAYNTVSR------GVLKVALSKDDGDSWHD----ALTLEENLAMEFSYPA- 293 (321)
Q Consensus 231 ~~--~~~~~~---~~~~~~~~~~-g~~~lv~~~~~r------~~l~~~~S~D~G~tW~~----~~~l~~~~~~~~~yp~- 293 (321)
.+ ...... ..+.+.++.+ ++.+|++..... ......+..-++.++.. ...++.+. + -|..
T Consensus 168 ~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~~~~~~~~~~~~~~lD~G~--d-fYA~q 244 (298)
T cd08996 168 ELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQGLEPEGNGSGTGYLVGDFDGTTFTFDHTEFGELDYGF--D-FYAPQ 244 (298)
T ss_pred eecccCCCccceEeCCcEEEECCCCeEEEEECCCCCCCCCCccceEEEEEEEECCCCeEecCCceEecCCC--C-eEeCc
Confidence 32 111110 1234455543 788888754311 12233333334555542 34444332 2 3443
Q ss_pred EEEccCC-eEEEEEEeCC
Q 020796 294 VIQASDG-SVHITYTYNR 310 (321)
Q Consensus 294 ~~~~~dg-~l~v~y~~~~ 310 (321)
....++| ++.+.|-.+.
T Consensus 245 ~~~~~~~r~i~~gW~~~~ 262 (298)
T cd08996 245 TFVDPDGRRILIGWMGNW 262 (298)
T ss_pred eeeCCCCCEEEEEEecCC
Confidence 3333244 5677786653
|
Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal |
| >cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00086 Score=58.77 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=80.8
Q ss_pred EEccCCeEEEeeecccCC-CCcEEEEEECCCCceeEEee-ceecC--C---CCcceeeeeEEEcCCCeEEEEEeecC---
Q 020796 140 ILLENGLLLCGSSVESWN-SWGSWMEVTVDAGRSWRKYG-PIYIP--N---ESLSVIQPVPFHTANRTLRVLMRSFN--- 209 (321)
Q Consensus 140 ~~~~~G~~~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~-~~~~~--~---~~~~~~~~~~~~~~~G~l~~~~r~~~--- 209 (321)
++..+|.+++........ .....+++|.| |.+|+... ++..+ . ...++..|.++.. +|+++|++....
T Consensus 5 v~~~~G~y~l~y~~~~~~~~~~ig~A~S~D-g~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~-~g~y~m~Yta~~~~~ 82 (268)
T cd08993 5 VVYDNGEFYLLYRAAGNDGVIRLGLARSRD-GLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKI-DDTYYITYAARPNAP 82 (268)
T ss_pred EEEECCEEEEEEEEECCCCceEEEEEEECC-CceEEECCcceEcCCCCCcccccCccCcEEEEE-CCEEEEEEEccCCCC
Confidence 344688765542221111 23467888988 89998753 22222 1 1234456777754 678988886543
Q ss_pred CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEE-cCCCcEEEEEeCC-----CCCeEEEEEEcCCCCCCCcceee
Q 020796 210 GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVK-LKDGRLLLAYNTV-----SRGVLKVALSKDDGDSWHDALTL 281 (321)
Q Consensus 210 ~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~-~~~g~~~lv~~~~-----~r~~l~~~~S~D~G~tW~~~~~l 281 (321)
....+.++.|+| +.+|+.......+.... ..+.. ..+|+.+|+++.. ....+.++.|.| +.+|.....+
T Consensus 83 ~~~~i~lA~S~D-~~~W~~~~~~~~~~~~d-~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~D-l~~W~~~~~~ 157 (268)
T cd08993 83 NGTRIGLATTKD-FITFERLGTSLVPNNRD-GILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPD-LVHWGNHRFV 157 (268)
T ss_pred CCcEEEEEEeCC-cceEEEecccCCCCCCC-EEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCC-cCccCCCeEE
Confidence 234688899988 78998643211111111 11111 1379999998653 245778888875 8899886644
|
This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.015 Score=51.25 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=118.5
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCCC----CCCCCCeEEEEeCCCcEEEEEE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEEP----NVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~~----~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
..+.|+|+.. +|+.+++..... ...+.+.+|+|. +|+.... +...+ ....+.|.++.. +|+.+|+|.
T Consensus 7 ~~~DP~i~~~-~g~yy~~~t~~~-----~~~i~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~v~~~-~g~y~~~y~ 79 (287)
T cd08999 7 DFPDPSVIRV-DGTYYAYATNGN-----GPNVPIATSTDLVNWTYLGDAFPKLPRWWTGGDFWAPDVSYV-NGKYVLYYS 79 (287)
T ss_pred CCCCCeEEEE-CCEEEEEEeCCC-----CCcEEEEECCCCCCcEECCcccCCCCCcccCCCccCceEEEE-CCEEEEEEE
Confidence 4578999887 588887543321 134788889987 9987543 33211 235677877665 599999988
Q ss_pred ecccc-CCceeEEEEecCCCCCCCCCccCC----CCCCCCCCCccEEccCCeEEEeeeccc-CCC--CcEEEEEECCCCc
Q 020796 100 IGQEV-QKWSGCMKRSYNKGVTWSEREQLP----PGILGPSKNKPILLENGLLLCGSSVES-WNS--WGSWMEVTVDAGR 171 (321)
Q Consensus 100 ~~~~~-~~~~~~~~~S~D~G~TWs~~~~l~----~~~~g~~~~~~~~~~~G~~~~~~~~~~-~~~--~~~~~~~S~D~G~ 171 (321)
..... ......++.|+|-...|+....+. .+....+...++...+|++++...... ..+ ..+++...+.++.
T Consensus 80 ~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~~~~~~~~i~~~~ls~d~~ 159 (287)
T cd08999 80 ARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGNSIGKPTPIYLQELSADGL 159 (287)
T ss_pred eecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCCCCCCCceEEEEEeCCCCc
Confidence 53221 122344677877555787643221 111112233344545788766532211 111 1244444445677
Q ss_pred eeEEee-ceecCC--CCcceee-eeEEEcCCCeEEEEEeecC---C--CCcEEEEEeccCCcCCCCCccCCCCC--CC--
Q 020796 172 SWRKYG-PIYIPN--ESLSVIQ-PVPFHTANRTLRVLMRSFN---G--IGRVCMSESCDGGLTWSYAKPTQLLN--PN-- 238 (321)
Q Consensus 172 tW~~~~-~~~~~~--~~~~~~~-~~~~~~~~G~l~~~~r~~~---~--~~~~~~~~S~D~G~tWs~~~~~~~~~--~~-- 238 (321)
+|.... .+..+. .....+| |.++.. +|+.++++.... . ...+.+++|+|---.|+......+.. ..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~~~EgP~i~k~-~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~~ 238 (287)
T cd08999 160 TLTGEPVRLLRNDEDWEGPLVEAPYLVKR-GGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNGR 238 (287)
T ss_pred cccCCcEeeecccccccCCceEeeEEEEE-CCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCCe
Confidence 775432 121111 1112233 566654 689888875432 1 23577788887655788643211110 10
Q ss_pred ----CceeEEEcCCCcEEEEEe
Q 020796 239 ----SGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 239 ----~~~~~~~~~~g~~~lv~~ 256 (321)
+...++..++|+.+++|.
T Consensus 239 ~~g~gh~~~~~~~~g~~~~~yh 260 (287)
T cd08999 239 WVGPGHNTVVTDDDGRDWLLYH 260 (287)
T ss_pred EEcCCCCeEEECCCCCEEEEEE
Confidence 112344555788888774
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.2e-05 Score=63.33 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=77.1
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccC-CCCcEEEEEECCCCceeEEeeceecCCCCc
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESW-NSWGSWMEVTVDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~ 186 (321)
++.|.-++|+|.||.+... .-+.. ..... .+. ..|.| .+....+++|+|+|+||.+.. +... ..
T Consensus 63 rgtiletdd~g~tw~qal~-~~gr~--~f~sv--------~f~-~~egw~vGe~sqll~T~DgGqsWARi~-~~e~--~e 127 (339)
T COG4447 63 RGTILETDDGGITWAQALD-FLGRH--AFHSV--------SFL-GMEGWIVGEPSQLLHTTDGGQSWARIP-LSEK--LE 127 (339)
T ss_pred cceEEEecCCcccchhhhc-hhhhh--heeee--------eee-cccccccCCcceEEEecCCCcchhhch-hhcC--CC
Confidence 3468899999999987653 22211 11111 111 11232 244567999999999999853 2211 11
Q ss_pred ceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCC--CCCCceeEEEcCCCcEEEEEeCCCCCeEE
Q 020796 187 SVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLL--NPNSGIDGVKLKDGRLLLAYNTVSRGVLK 264 (321)
Q Consensus 187 ~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~--~~~~~~~~~~~~~g~~~lv~~~~~r~~l~ 264 (321)
+.. -+|..+++.+-+|+.. .+.| .+++|+|++|+...+-..+ .++ .+.+..|+.+++|.... .
T Consensus 128 g~~-~sI~f~d~q~g~m~gd----~Gai--l~T~DgGk~Wk~l~e~~v~~~~~n---~ia~s~dng~vaVg~rG-----s 192 (339)
T COG4447 128 GFP-DSITFLDDQRGEMLGD----QGAI--LKTTDGGKNWKALVEKAVGLAVPN---EIARSADNGYVAVGARG-----S 192 (339)
T ss_pred CCc-ceeEEecchhhhhhcc----cceE--EEecCCcccHhHhcccccchhhhh---hhhhhccCCeEEEecCc-----c
Confidence 211 1333344434333322 2444 4578999999986542211 111 12344678888887532 3
Q ss_pred EEEEcCCCCCCCcce
Q 020796 265 VALSKDDGDSWHDAL 279 (321)
Q Consensus 265 ~~~S~D~G~tW~~~~ 279 (321)
++.+-+-|++|-.++
T Consensus 193 ~f~T~~aGqt~~~~~ 207 (339)
T COG4447 193 FFSTWGAGQTVWLPH 207 (339)
T ss_pred eEecCCCCccEEecc
Confidence 455667788876554
|
|
| >PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0033 Score=55.44 Aligned_cols=223 Identities=18% Similarity=0.154 Sum_probs=128.3
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCC--C-CCC---C-CCccEEccCCeEEEeee
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPG--I-LGP---S-KNKPILLENGLLLCGSS 152 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~--~-~g~---~-~~~~~~~~~G~~~~~~~ 152 (321)
...+|.++.. +|+.+++.+..... ....+.+|+| -.+|+....+... . ... . ..+-+...+|++++...
T Consensus 9 ~~~DP~i~~~-~~~yY~~~t~~~~~--~~i~v~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~ 84 (286)
T PF04616_consen 9 DYADPSIVRF-GDGYYLYGTTDPEG--PGIPVWSSKD-LVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYS 84 (286)
T ss_dssp SECSEEEEEE-TTEEEEEEEEBTCE--SBEEEEEESS-SSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEE-CCEEEEEEEcCCCC--CeEEEEECCC-CcccccceeeecccccccccccccccCCeEEEcCCeEEEEEE
Confidence 4567988776 45577776542111 2345777776 6889987753321 1 100 0 11224445888766544
Q ss_pred ccc-CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCC---CcEEEEEeccCCcCCCC
Q 020796 153 VES-WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGI---GRVCMSESCDGGLTWSY 228 (321)
Q Consensus 153 ~~~-~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~---~~~~~~~S~D~G~tWs~ 228 (321)
... .....+.++.|++-.-.|+.+..+... ....+.|.++..+||+.++++...... ..+++++..+.+.++..
T Consensus 85 ~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~--~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~ 162 (286)
T PF04616_consen 85 DSGGDAGSGIGVATADSPDGPWTDPGKIPIP--GGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLTG 162 (286)
T ss_dssp EESTSTTEEEEEEEESSTTS-EEEEEEEEEE--SSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEEE
T ss_pred ccCCCCCcceeEEEeCCcccccccccceeec--cccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCccccccC
Confidence 111 123457888888776799988654322 234567889888889999988765322 35677666665665554
Q ss_pred Cc-cCCCCC-------CCCceeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCCCCCC--Ccce-eecc----cCCCcee
Q 020796 229 AK-PTQLLN-------PNSGIDGVKLKDGRLLLAYNTV---SRGVLKVALSKDDGDSW--HDAL-TLEE----NLAMEFS 290 (321)
Q Consensus 229 ~~-~~~~~~-------~~~~~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~G~tW--~~~~-~l~~----~~~~~~~ 290 (321)
.. ....+. ...+..+.. .+|..+|++... ....+.++.|.+--..| .+.. ++.. ....+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~Egp~~~k-~~g~yYl~~s~~~~~~~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g~g 241 (286)
T PF04616_consen 163 EPVVVIFPGDEGWDGGVVEGPFVFK-HGGKYYLFYSAGGTGSPYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYGPG 241 (286)
T ss_dssp EECEEEEEESGSSTTTBEEEEEEEE-ETTEEEEEEEESGSSTTTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEEEE
T ss_pred cccccccccccccCCccccceEEEE-cCCCEEEEEeccCCCCCceEEEeeccCCCCceeeccCCeEEEeeccCCccccCc
Confidence 33 110111 111233444 578999998632 23667888887533333 3222 2221 1123567
Q ss_pred ceEEEEccCCeEEEEEEeC
Q 020796 291 YPAVIQASDGSVHITYTYN 309 (321)
Q Consensus 291 yp~~~~~~dg~l~v~y~~~ 309 (321)
+..++..+||..+++|...
T Consensus 242 H~~~~~~~~g~~~~~yh~~ 260 (286)
T PF04616_consen 242 HGSVFKDPDGRWYIVYHAR 260 (286)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred cCCEEECCCCCEEEEEeec
Confidence 8889988899988888653
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B .... |
| >cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.01 Score=52.34 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=110.1
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCc-----eeEEEEecCCCCCCCCCcc-CCCC-----CCCCCCCccEEccCCeEEEee
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKW-----SGCMKRSYNKGVTWSEREQ-LPPG-----ILGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~-----~~~~~~S~D~G~TWs~~~~-l~~~-----~~g~~~~~~~~~~~G~~~~~~ 151 (321)
+|.++.. +|+.+|||+.......+ .-.+++|+| +.+|+.... +.++ ..+...+.+ +..+|++++..
T Consensus 2 d~~~~~~-~G~yhlfyq~~p~~~~~~~~~~~wgha~S~D-lv~W~~~~~al~~~~~~~d~~g~~sgs~-~~~~g~~~l~Y 78 (280)
T cd08995 2 DPMPFYD-DGTFHIFYLHDPRNGPPEGLRHPWSLLTTKD-LVNYEDHGEAIPRGGDEDDDDAIGTGSV-IKGEGTYHAFY 78 (280)
T ss_pred CccceEE-CCEEEEEEEcCCCCCCcccCCceEEEEEccC-cCccEECcceecCCCCcccccCceEeEE-EeeCCEEEEEE
Confidence 4555544 79999999853322222 124677887 899976543 2221 112222233 33467765432
Q ss_pred ecc-cC--CCCcEEEEEECCCCceeEEee--ceecCCC---CcceeeeeEEEcC-CCeEEEEEeec------CCCCcEEE
Q 020796 152 SVE-SW--NSWGSWMEVTVDAGRSWRKYG--PIYIPNE---SLSVIQPVPFHTA-NRTLRVLMRSF------NGIGRVCM 216 (321)
Q Consensus 152 ~~~-~~--~~~~~~~~~S~D~G~tW~~~~--~~~~~~~---~~~~~~~~~~~~~-~G~l~~~~r~~------~~~~~~~~ 216 (321)
... .. ....+.+++|+| |.+|++.. ++..++. ......|.++..+ +|+.+|++... ...+.+.+
T Consensus 79 Tg~~~~~~~~~~i~~A~S~D-~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~~g~i~~ 157 (280)
T cd08995 79 TGHNLDGKPKQVVMHATSDD-LITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNRRGCIAL 157 (280)
T ss_pred EEECCCCCCcEEEEEEECCC-CCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCCCeEEEE
Confidence 111 11 112456778877 58999854 2221111 1223457777654 58887776432 22356777
Q ss_pred EEeccCCcCCCCCccCCCCCC---CCceeEEEcCCCcEEEEEeCC-CCCeEEEEEEcCCCCCCCcce--eecccCCCcee
Q 020796 217 SESCDGGLTWSYAKPTQLLNP---NSGIDGVKLKDGRLLLAYNTV-SRGVLKVALSKDDGDSWHDAL--TLEENLAMEFS 290 (321)
Q Consensus 217 ~~S~D~G~tWs~~~~~~~~~~---~~~~~~~~~~~g~~~lv~~~~-~r~~l~~~~S~D~G~tW~~~~--~l~~~~~~~~~ 290 (321)
..|.| ..+|+....+..+.. -..+.+.++ +|+.+|++... ......+.++.+....|..+. .++ + .++=
T Consensus 158 ~~S~D-l~~W~~~~~~~~~~~~~~~E~P~l~~~-~g~~~L~~s~~~~~~~~~Y~~~~~~~g~~~~~~~~~~d-g--~dfY 232 (280)
T cd08995 158 FTSKD-LKNWEYEEPFYAPGLYFMPECPDLFKM-GDWWYLVYSEFSENRKTHYRVSKSPFGPWRAPDDDTFD-G--RAFY 232 (280)
T ss_pred EEeCC-cCcceecCceecCCCcceeecceEEEE-CCEEEEEEEeccCCCcEEEEEeCCCCCCeEcCCcCccC-c--cccc
Confidence 77866 789986533211111 012344554 58888888653 223344555543222343322 222 2 2332
Q ss_pred ceEEEEccCCeEEEEEEeC
Q 020796 291 YPAVIQASDGSVHITYTYN 309 (321)
Q Consensus 291 yp~~~~~~dg~l~v~y~~~ 309 (321)
-|.....++.+|.+.|-.+
T Consensus 233 A~~~~~~~~r~i~~gw~~~ 251 (280)
T cd08995 233 AAKTASDGTRRFLFGWVPT 251 (280)
T ss_pred ceeEEEeCCeEEEEEEecC
Confidence 2334443433567778654
|
This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a |
| >PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0063 Score=53.63 Aligned_cols=225 Identities=14% Similarity=0.152 Sum_probs=123.7
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-CCC-----CC-CCCeEEEEeCCCcEEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-EPN-----VP-MWNPVLFKLPSNGLLL 96 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~~~-----~~-~~~p~l~~~~~G~l~l 96 (321)
...+.|.|+...+ ..+++.... ... -.|.+.+|+|- +|+....+.. .+. .. .+.|.+... +|+.+|
T Consensus 8 ~~~~DP~i~~~~~-~yY~~~t~~-~~~---~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~-~g~yy~ 81 (286)
T PF04616_consen 8 GDYADPSIVRFGD-GYYLYGTTD-PEG---PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYI-NGKYYM 81 (286)
T ss_dssp SSECSEEEEEETT-EEEEEEEEB-TCE---SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEE-TTEEEE
T ss_pred CCCCCCEEEEECC-EEEEEEEcC-CCC---CeEEEEECCCCcccccceeeecccccccccccccccCCeEEEc-CCeEEE
Confidence 4457899998775 466543221 111 23778889996 9998875432 111 11 277988754 899999
Q ss_pred EEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCC--CCcEEEEEECCCCceeE
Q 020796 97 FYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWN--SWGSWMEVTVDAGRSWR 174 (321)
Q Consensus 97 ~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~S~D~G~tW~ 174 (321)
+|............+..|++-...|+.+..+.......+-..++...||+.++........ ...+.+...++++.++.
T Consensus 82 y~~~~~~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~ 161 (286)
T PF04616_consen 82 YYSDSGGDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLT 161 (286)
T ss_dssp EEEEESTSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEE
T ss_pred EEEccCCCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCcccccc
Confidence 9882122223346688888776789888765321111122234455569987764432111 12456666666677766
Q ss_pred Eee-ceecCC---CCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCC--ccCCC--CCC----CC
Q 020796 175 KYG-PIYIPN---ESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYA--KPTQL--LNP----NS 239 (321)
Q Consensus 175 ~~~-~~~~~~---~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~--~~~~~--~~~----~~ 239 (321)
... .+..++ ......| |.++. .+|.+++++.... ....+.+++|.|---.|+.. .++-. ... ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~Egp~~~k-~~g~yYl~~s~~~~~~~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g~ 240 (286)
T PF04616_consen 162 GEPVVVIFPGDEGWDGGVVEGPFVFK-HGGKYYLFYSAGGTGSPYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYGP 240 (286)
T ss_dssp EEECEEEEEESGSSTTTBEEEEEEEE-ETTEEEEEEEESGSSTTTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEEE
T ss_pred CcccccccccccccCCccccceEEEE-cCCCEEEEEeccCCCCCceEEEeeccCCCCceeeccCCeEEEeeccCCccccC
Confidence 554 121111 1223445 55555 4688888876432 23467778887764444322 21100 000 01
Q ss_pred c-eeEEEcCCCcEEEEEe
Q 020796 240 G-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 240 ~-~~~~~~~~g~~~lv~~ 256 (321)
+ ..++..++|+.+++|.
T Consensus 241 gH~~~~~~~~g~~~~~yh 258 (286)
T PF04616_consen 241 GHGSVFKDPDGRWYIVYH 258 (286)
T ss_dssp EEEEEEEETTSEEEEEEE
T ss_pred ccCCEEECCCCCEEEEEe
Confidence 1 2456667888888875
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B .... |
| >cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.023 Score=49.51 Aligned_cols=221 Identities=11% Similarity=0.015 Sum_probs=115.4
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-c----CC---CCCCCCCeEEEEeCCCcEEEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-D----EE---PNVPMWNPVLFKLPSNGLLLFY 98 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~----~~---~~~~~~~p~l~~~~~G~l~l~~ 98 (321)
|.|+|+... |+.++.+..... ....|.+.+|+|+ +|+....+ . .. .....+.|.++.. +|+.+|+|
T Consensus 1 ~DP~v~~~~-~~yyl~~t~~~~---~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~-~g~yyl~y 75 (271)
T cd08978 1 ADPYILRYN-GKYYLYGSTDDA---AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYY-EGKYYLYY 75 (271)
T ss_pred CCCcEEEEC-CEEEEEEecCCc---CCCcEEEEECCccCCcEECCcccccccccCCcccCCceeCCeEEEE-CCEEEEEE
Confidence 468888765 577765543211 1224677788888 99875433 1 11 1235778988766 59999998
Q ss_pred Eeccc-cCCceeEEEEecCCCCCCCCCc---cCCCCCCCCCCCccEEccCCeEEEeeecccC--CCCcEEEEEECCCCce
Q 020796 99 KIGQE-VQKWSGCMKRSYNKGVTWSERE---QLPPGILGPSKNKPILLENGLLLCGSSVESW--NSWGSWMEVTVDAGRS 172 (321)
Q Consensus 99 ~~~~~-~~~~~~~~~~S~D~G~TWs~~~---~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~S~D~G~t 172 (321)
..... .......++.|+| ...|.... .........+...++...+|+.++....... ....+.+..++++...
T Consensus 76 ~~~~~~~~~~~i~~a~s~d-~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~~~~i~~~~l~~~~~~ 154 (271)
T cd08978 76 SVSDFDYNGSGIGVATSED-PTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAGFGGIYISELTDDLTK 154 (271)
T ss_pred EcccCCCCcccEEEEECCC-CCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCCCCcEEEEEECccccc
Confidence 86321 1122345666655 45654432 1111111122333444445887665322110 1235678888887665
Q ss_pred eEEeece-ecCCCCccee-eeeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCCccC------C----CCCC
Q 020796 173 WRKYGPI-YIPNESLSVI-QPVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYAKPT------Q----LLNP 237 (321)
Q Consensus 173 W~~~~~~-~~~~~~~~~~-~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~~~~------~----~~~~ 237 (321)
+.....+ .......... .|.++.. +|..++++.... ....+.+++|++---.|+..... . ..++
T Consensus 155 ~~~~~~~~~~~~~~~~~~EgP~~~k~-~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~~ 233 (271)
T cd08978 155 PTGPPVLSASSGNNNAVTEGPTIFKK-NGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVGL 233 (271)
T ss_pred ccCCceeeeeeccCCCceEccEEEEE-CCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCccccC
Confidence 5432211 0011111122 3566654 588888876542 23567778887765667753211 0 0011
Q ss_pred CCceeEEEcCCCcEEEEEe
Q 020796 238 NSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~~~~~~~~~~g~~~lv~~ 256 (321)
+...+++..+|+.++++.
T Consensus 234 -gh~~~~~~~~g~~~~~yh 251 (271)
T cd08978 234 -GHGSVVRDKNGEWYLVYH 251 (271)
T ss_pred -CCceEEECCCCCEEEEEE
Confidence 112345555678888875
|
This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma |
| >cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.023 Score=49.96 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=116.3
Q ss_pred CeEEEEeCCCcEEEEEEeccccCC---c---eeEEEEecCCCCCCCCCccCCC-CC-----CCCCCCccEEccCCeEEEe
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQK---W---SGCMKRSYNKGVTWSEREQLPP-GI-----LGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~---~---~~~~~~S~D~G~TWs~~~~l~~-~~-----~g~~~~~~~~~~~G~~~~~ 150 (321)
+|.++.. +|+.+++.+....... + ...+..|+| ..+|+....+.+ .. .+.+..+-+...+|++++.
T Consensus 2 DP~~~~~-~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~D-l~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~~~g~yy~y 79 (274)
T cd08990 2 DPAAHVF-NGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPD-LVNWTDHGVILSVTDFPAWAKGQAWAPDVVEKNGKYYLY 79 (274)
T ss_pred CCCcEEE-CCEEEEEeCCCCCCCCCCccccceEEEEECCC-CCCcEECcccccCCCCCccccCCcCcCeEEEECCEEEEE
Confidence 3555544 6888877553211110 1 124566776 789986654322 11 1112222234457886553
Q ss_pred eeccc-CCCCcEEEEEECCCCceeEEeeceecC---CCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCC
Q 020796 151 SSVES-WNSWGSWMEVTVDAGRSWRKYGPIYIP---NESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 151 ~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tW 226 (321)
..... .....+.++.|+|-.-.|+....+.+. ......+.|.+...+||+.++++... ..++++.-.++..+|
T Consensus 80 y~~~~~~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~---~~~~~~~l~~d~~~~ 156 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG---LGLRVAKLKPDMLSL 156 (274)
T ss_pred EEeecCCCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc---CCEEEEEeCcccccc
Confidence 22211 112356778887755568876533211 11234567888887889999987543 345555444447788
Q ss_pred CCCcc-CCC--------CCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce-eecccCCCceeceEEEE
Q 020796 227 SYAKP-TQL--------LNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL-TLEENLAMEFSYPAVIQ 296 (321)
Q Consensus 227 s~~~~-~~~--------~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~-~l~~~~~~~~~yp~~~~ 296 (321)
+.... +.. .....+..+.. .+|+.+|+|.......+.+++|++=--.|.... ++........+++.++.
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~EgP~i~k-~~G~YYl~yS~~~~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~gh~~~~~ 235 (274)
T cd08990 157 KGEPVEIVITDGAGDELRRFFEAPWVHK-RNGTYYLSYSTGDPEEIAYATSDSPLGPFTYRGVILDPPVNGGTNHGSIVE 235 (274)
T ss_pred CCCcEEEEeccccCCCCCCcccceeEEE-ECCEEEEEEECCCCcEEEEEEcCCCCCCcccCcEEecCCCCCCCCCCeEEE
Confidence 65321 110 01112233444 579999998754455667777764322454433 22211122456777776
Q ss_pred ccCCeEEEEEEeC
Q 020796 297 ASDGSVHITYTYN 309 (321)
Q Consensus 297 ~~dg~l~v~y~~~ 309 (321)
. +|..|++|-..
T Consensus 236 ~-~g~~y~~yh~~ 247 (274)
T cd08990 236 F-KGQWYLFYHRA 247 (274)
T ss_pred E-CCeEEEEEECC
Confidence 4 58889888653
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of |
| >TIGR01322 scrB_fam sucrose-6-phosphate hydrolase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.018 Score=54.38 Aligned_cols=175 Identities=13% Similarity=0.061 Sum_probs=91.3
Q ss_pred cceEEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCCC---CCCCCeEEEEeCCCcEEEEEEecc
Q 020796 29 ASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEPN---VPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~~---~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
.|--+...+|+.++.|.-... ...+.+....++|+|. +|+. +..+.+... ..+..+..+. .+|+++++|+...
T Consensus 28 DPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~G~~sGsav~-~~g~~~l~YTg~~ 106 (445)
T TIGR01322 28 DPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKDLVHWEDEGVALAPDDPYDSHGCYSGSAVD-NNGQLTLMYTGNV 106 (445)
T ss_pred CCCcceEECCEEEEEEccCCCCCccCceEEEEEECCCccccEECCccCcCCCcccCCceEECeEEe-eCCEEEEEEeccc
Confidence 344233446888887643222 1123344556788898 9986 455544321 2344566554 5899999998532
Q ss_pred ccC----CceeEEEEecCCCCCCCCCc-c-CCCCCCC---CCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCcee
Q 020796 103 EVQ----KWSGCMKRSYNKGVTWSERE-Q-LPPGILG---PSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 103 ~~~----~~~~~~~~S~D~G~TWs~~~-~-l~~~~~g---~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW 173 (321)
... ....++++|+|+ .+|++.. + +.+...+ ..+.+-+...+|++++.............+++++++..+|
T Consensus 107 ~~~~~~~~~~q~lA~S~Dg-~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~~g~~~M~~g~~~~~~~g~i~ly~S~Dl~~W 185 (445)
T TIGR01322 107 RDSDWNRESYQCLATMDDD-GHFEKFGIVVIELPPAGYTAHFRDPKVWKHNGHWYMVIGAQTETEKGSILLYRSKDLKNW 185 (445)
T ss_pred cCCCCCeeEEEEEEEcCCC-CeEEECCCceEeCCCCCCcCcCCCCcEEeECCEEEEEEEEecCCCceEEEEEECCCcccC
Confidence 111 112357889885 5898754 2 2221111 1232334445687755422211111123344555678999
Q ss_pred EEeeceecCC----CCcc-ee-eeeEEEcCCCeEEEEEe
Q 020796 174 RKYGPIYIPN----ESLS-VI-QPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~~~~~~~~----~~~~-~~-~~~~~~~~~G~l~~~~r 206 (321)
+...++..+. ...+ .. .|.++.+. |+-++++.
T Consensus 186 ~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~-~k~vL~~s 223 (445)
T TIGR01322 186 TFVGEILGDGQNGLDDRGYMWECPDLFSLD-GQDVLLFS 223 (445)
T ss_pred eEecccccccccccCCccceEECCeEEEEC-CcEEEEEe
Confidence 9877553322 1122 23 37788885 45555543
|
|
| >PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0062 Score=54.56 Aligned_cols=169 Identities=17% Similarity=0.235 Sum_probs=91.2
Q ss_pred ccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCCc-EEccCCCC---CCCCCeEEEEeCCCcEEEEEEe
Q 020796 28 HAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQSP-IIADEEPN---VPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 28 ~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~~-~~~~~~~~---~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
..|- ++. -+|+.+++|.-... ...+.+.---++|+|- +|+.. ..+.++.. ..+...+.+.+. ++++++|+.
T Consensus 10 NDPnG~~~-~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~d~~g~~SGs~~~~~-~~~~~~YTg 87 (308)
T PF00251_consen 10 NDPNGLVY-YDGKYHLFYQYNPFGPEWGNMHWGHATSKDLVHWEHLPVALPPDEEYDADGCFSGSAVVDD-DNLVLFYTG 87 (308)
T ss_dssp EEEEEEEE-ETTEEEEEEEEETTSSSS-SBEEEEEEESSSSSEEEEEEEE-SSSGGGTTEEEEEEEEEET-TCEEEEEEE
T ss_pred ECCccCeE-eCCEEEEEeccCCCCcccceeEEEEEECCCCCCceeCCceEcccccCCcCccCcceEEEEC-CEEEEEEec
Confidence 3453 554 66999987744332 1122444556889998 99974 34544321 124445555664 489999996
Q ss_pred ccccCCceeEEEEecCCCCCCCCCc---cCCC----CCCCCCCCccE-EccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 101 GQEVQKWSGCMKRSYNKGVTWSERE---QLPP----GILGPSKNKPI-LLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 101 ~~~~~~~~~~~~~S~D~G~TWs~~~---~l~~----~~~g~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
..........+++|+|+|.+|++.. +|.. +.....+.+-+ ...+|++++...........+.++.|+ +..+
T Consensus 88 ~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~~~g~i~~y~S~-Dl~~ 166 (308)
T PF00251_consen 88 NNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRDGRGCILLYTSD-DLIH 166 (308)
T ss_dssp EETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEETTEEEEEEEEES-SSSS
T ss_pred cCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEeccccCcceEEEEEcC-Cccc
Confidence 4332233456899989999998832 2221 11111222223 345687765432211112234556665 5799
Q ss_pred eEEeeceecCCC-Ccceee-eeEEEcCCC
Q 020796 173 WRKYGPIYIPNE-SLSVIQ-PVPFHTANR 199 (321)
Q Consensus 173 W~~~~~~~~~~~-~~~~~~-~~~~~~~~G 199 (321)
|+....+...+. .....| |.++.+++.
T Consensus 167 W~~~~~l~~~~~~~g~~~ECPdlf~l~~~ 195 (308)
T PF00251_consen 167 WEYLGPLFIPGDNGGGMWECPDLFPLDGK 195 (308)
T ss_dssp EEEEEEESEEETTTSSEEEEEEEEEEEBT
T ss_pred CceeCcccccccccccccccceEEEECCc
Confidence 998875543322 122333 677776554
|
; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A .... |
| >smart00602 VPS10 VPS10 domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0072 Score=59.28 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=32.7
Q ss_pred EEEEecCCCCCCCCCccCCCCCCCCCCCccEEcc-CCe-EEEeeecccCCCCcEEEEEECCCCceeEEee
Q 020796 110 CMKRSYNKGVTWSEREQLPPGILGPSKNKPILLE-NGL-LLCGSSVESWNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 110 ~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~-~G~-~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
.+.+|+|+|+||+... ++... .......+ +.. +++.... +....+++|+|+|+||+...
T Consensus 56 ~ly~S~D~GkTW~~~~-~p~~~----~~~l~~hp~~~~~il~~~~~----~~~~~ly~S~DgG~tW~~i~ 116 (612)
T smart00602 56 YIFISSDEGKSFQKFT-LPFPP----LPSLLYHPKHPDYVLAYSKD----CNYKVLYVSKDFGKTWTEIQ 116 (612)
T ss_pred cEEEeecCCcceeEEE-CCCCC----ccceEECCCCCCEEEEEecC----CCCceEEEEcCCCCCcEEcc
Confidence 4889999999998653 22110 01111111 223 3332111 11136899999999999753
|
|
| >cd08983 GH43_4 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.032 Score=49.09 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=107.0
Q ss_pred CCccccceEEEe-cCCcEEEEEecCCCC--CCCCcEEEEEEeCCC-CcCCcEEcc-C-CCCCCCCCeEEEEeC-CCcEEE
Q 020796 24 FKSCHASTIVEV-DKGHFLVAYFGGSCE--GAPDVKIWLQTFKDG-RWQSPIIAD-E-EPNVPMWNPVLFKLP-SNGLLL 96 (321)
Q Consensus 24 ~~~~~~p~l~~~-~~g~l~~~~~~~~~~--g~~~~~i~~s~s~~G-tWs~~~~~~-~-~~~~~~~~p~l~~~~-~G~l~l 96 (321)
-...|.|.|+.. ++|+.++++...... +.....|.+.+|.|- +|+.+..+. . ......|.|.++.++ +|+.+|
T Consensus 15 ~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~~ 94 (276)
T cd08983 15 TKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYVV 94 (276)
T ss_pred CCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCCCcCcEeCccceEcCCCCeEEE
Confidence 366788999988 567777766443211 112345888999997 999887643 2 122346789887765 788888
Q ss_pred EEEeccccC---CceeEE-EEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 97 FYKIGQEVQ---KWSGCM-KRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 97 ~~~~~~~~~---~~~~~~-~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
+|+...... .....+ ..++.+-.+|+.+..+.....+.+-..++. .+|..++....+. ...+.+.+|++---.
T Consensus 95 ~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~~~~~~~ID~~v~~-~~g~~Yl~~k~~~--~~~i~~~~s~~l~g~ 171 (276)
T cd08983 95 YWSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWIDLGANVIDTTVVK-VGGTYYRFYKNEG--SKDIELARSKSLTGP 171 (276)
T ss_pred EEecccCCCCCCCccEEEEEEecCcccccCCCeEeecCCCCeEeeEEEE-eCCEEEEEEecCC--CCcEEEEEeCCCCCC
Confidence 888642210 111122 233334679998877543211222222233 3477665533222 234666777753224
Q ss_pred eEEeeceecCCCCcceeeeeEEEcCC-CeEEEEEeecCCCCcEEEEEeccCCc-CCCC
Q 020796 173 WRKYGPIYIPNESLSVIQPVPFHTAN-RTLRVLMRSFNGIGRVCMSESCDGGL-TWSY 228 (321)
Q Consensus 173 W~~~~~~~~~~~~~~~~~~~~~~~~~-G~l~~~~r~~~~~~~~~~~~S~D~G~-tWs~ 228 (321)
|+...... .......-.|.++...+ |..++++..-.. +.-+...|.|... .|+.
T Consensus 172 ~~~~~~~~-~~~~~~~EgP~v~k~~~~~~y~L~~d~y~~-~~Y~~~~t~d~~~~~~~~ 227 (276)
T cd08983 172 WTIVGTGD-AGWGGAVEGPTVFKLNNGGGWYLYGDNYSG-GGYYPFDTSDLASTSWTK 227 (276)
T ss_pred ceEecccc-cCCCCceeCCeEEEECCCCEEEEEEEECCC-CCeEEEEecCcCCCceec
Confidence 66543110 11111222367777665 577777654322 2333355667533 3543
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >COG4692 Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00032 Score=60.44 Aligned_cols=193 Identities=14% Similarity=0.132 Sum_probs=103.2
Q ss_pred eEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccE-EccCCeEEEeeecccCCCCcEE
Q 020796 84 PVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPI-LLENGLLLCGSSVESWNSWGSW 162 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~ 162 (321)
+.+...++|++.+.|-.+...+.-+.++..+.-.-..|.+|..+.....+...++.. ..+++-|++...+..+.-+...
T Consensus 36 aflhrl~~gtlv~awF~gt~eg~~D~~~s~~a~~~n~w~~pqrlsa~~~~s~~npvlf~~sdnlwLF~t~~n~~~~~~~~ 115 (381)
T COG4692 36 AFLHRLPDGTLVCAWFGGTLEGKSDIFLSVLASSLNSWGEPQRLSADFSHSEQNPVLFKASDNLWLFHTSQNQDECRIRM 115 (381)
T ss_pred HhhhcccccceechhhcccccCccchheeeehhhhcccCCcceeeeccCccccCceEEecCCceEEEEccCCcceeeeee
Confidence 445566889988877655444444444555555567999999887543222233333 3455533333222222223445
Q ss_pred EEEECCCCceeEEeeceecC-CCCcce-eeeeEEEcCCCeEEE-EEeecC--------CCCcEEEEEeccCCcCCCCCcc
Q 020796 163 MEVTVDAGRSWRKYGPIYIP-NESLSV-IQPVPFHTANRTLRV-LMRSFN--------GIGRVCMSESCDGGLTWSYAKP 231 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~~~-~~~~~~-~~~~~~~~~~G~l~~-~~r~~~--------~~~~~~~~~S~D~G~tWs~~~~ 231 (321)
...|.|.+.+|+...++..+ --..|| +...++..++|..++ +||.-. ...+..+..|.|.|++|+-..
T Consensus 116 ~~~e~d~~~~~~~~a~lgn~l~lprg~~i~~~lv~~s~GaW~~~i~~~~~~pg~i~~~~~~ra~v~~s~d~gk~wr~~~- 194 (381)
T COG4692 116 ATKERDAHDPTRLIAKLGNYLDLPRGCFIRAPLVGRSDGAWLLPIFRCIQRPGQIWNGSHDRAAVGPSLDLGKSWRLKD- 194 (381)
T ss_pred eeeccccCCchhhhhccCCchhccCCCceeeeEEEecccchhhhhhhhhcCcccccCchhhhcccccccccCceeeecc-
Confidence 67788999999987544211 011232 344455556776444 444211 123578889999999998632
Q ss_pred CCCCCCCCceeE--EEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 232 TQLLNPNSGIDG--VKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 232 ~~~~~~~~~~~~--~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
++ ...+.+.+ ...-+++..++++......++-..+.|.|++|..+.
T Consensus 195 ln--~s~g~v~l~p~~~~~t~y~al~~~~q~~~~~~~el~~~~r~~~~~Q 242 (381)
T COG4692 195 LN--TSDGCVHLSPYHEGDTQYAALFRRRQADNVYRCELLDGGRTWSQPQ 242 (381)
T ss_pred cc--ccCccEecChhhcccccchhhhhhhhcCCeeeeeeccCcccccCcC
Confidence 21 11222221 122345555666433223333345667777777665
|
|
| >smart00640 Glyco_32 Glycosyl hydrolases family 32 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.032 Score=52.57 Aligned_cols=199 Identities=13% Similarity=0.156 Sum_probs=103.7
Q ss_pred cccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEE
Q 020796 27 CHAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 27 ~~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
...|- |+.. +|+.++.|.-... ...+.+....++|+|. +|+. +..+.+.. ...+..+..+.+ +|+++++|+
T Consensus 9 ~NDPnGl~~~-~G~yHlFyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~~-~~~~~~~YT 86 (437)
T smart00640 9 MNDPNGLIYY-KGKYHLFYQYNPFGPVWGNIHWGHAVSKDLVHWTHLPVALAPDEWYDSNGVFSGSAVID-PGNLSLLYT 86 (437)
T ss_pred cCCCCeeeEE-CCEEEEEEecCCCCCCCCCeEEEEEEcCCcceeeecCcccCCCCcCCCCcEEEEEEEEC-CCceEEEEc
Confidence 34455 5444 6899987744322 1122455677889998 9986 44454432 123566766554 567999998
Q ss_pred ecccc------CCceeEEEEecCCCCCCCCC--ccC-CCCC---CCCCCCccEEccC-CeEEEeeecccCCCCcEEEEEE
Q 020796 100 IGQEV------QKWSGCMKRSYNKGVTWSER--EQL-PPGI---LGPSKNKPILLEN-GLLLCGSSVESWNSWGSWMEVT 166 (321)
Q Consensus 100 ~~~~~------~~~~~~~~~S~D~G~TWs~~--~~l-~~~~---~g~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~S 166 (321)
..... ......+..|+|+|.+|++. .++ .+.. ....+.+-+...+ |++++.............++++
T Consensus 87 g~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~~~~~~G~i~ly~ 166 (437)
T smart00640 87 GNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGASDEDKTGIALLYR 166 (437)
T ss_pred CCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEEEecCCCeEEEEEE
Confidence 53211 11222366788889999874 222 2211 1112322232334 4765543221112223345555
Q ss_pred CCCCceeEEeeceecCC-CCc-ceee-eeEEEcCCC----eEEEEEeecCCCCcEEEEEeccCC-cCCCC
Q 020796 167 VDAGRSWRKYGPIYIPN-ESL-SVIQ-PVPFHTANR----TLRVLMRSFNGIGRVCMSESCDGG-LTWSY 228 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~-~~~-~~~~-~~~~~~~~G----~l~~~~r~~~~~~~~~~~~S~D~G-~tWs~ 228 (321)
+++..+|+...++..++ ... ...| |.++.+++. +-++++...+.....|..-+.| | .+|.+
T Consensus 167 S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~g~~~~~y~~G~~~-g~~~f~~ 235 (437)
T smart00640 167 STDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQGGSGNYYFVGYFD-GSDQFTP 235 (437)
T ss_pred CCCcccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcCCCCccEEEEEEEc-CceeEeE
Confidence 56789999877653321 111 2233 677777541 5455554332223455554555 4 46764
|
|
| >cd08983 GH43_4 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.053 Score=47.75 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=99.3
Q ss_pred CCCCCCeEEEEe-CCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCC--CCCCC-CCCccEEcc-CCeEE
Q 020796 78 NVPMWNPVLFKL-PSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPP--GILGP-SKNKPILLE-NGLLL 148 (321)
Q Consensus 78 ~~~~~~p~l~~~-~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~--~~~g~-~~~~~~~~~-~G~~~ 148 (321)
.....+|.++.. .+|+-+++++.... .+.....+.+|+| -.+|+....+.. ...+. ..+.++-.+ +|+.+
T Consensus 15 ~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~D-Lv~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~ 93 (276)
T cd08983 15 TKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTD-LVNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYV 93 (276)
T ss_pred CCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCc-ccCCcccceeecCCCCcCcEeCccceEcCCCCeEE
Confidence 345778999887 56777777764211 0122344667766 689998876531 11121 222333333 57765
Q ss_pred EeeecccCC----CCcEEEEEEC-CCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCC
Q 020796 149 CGSSVESWN----SWGSWMEVTV-DAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGG 223 (321)
Q Consensus 149 ~~~~~~~~~----~~~~~~~~S~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G 223 (321)
+........ .....++.++ .+..+|+.+.++. . ...+.+.+.++..+ |+.++++.... ...+.+++|.+--
T Consensus 94 ~~~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~-~-~~~~~ID~~v~~~~-g~~Yl~~k~~~-~~~i~~~~s~~l~ 169 (276)
T cd08983 94 VYWSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWI-D-LGANVIDTTVVKVG-GTYYRFYKNEG-SKDIELARSKSLT 169 (276)
T ss_pred EEEecccCCCCCCCccEEEEEEecCcccccCCCeEee-c-CCCCeEeeEEEEeC-CEEEEEEecCC-CCcEEEEEeCCCC
Confidence 543222111 1122233332 3567899765442 2 23466777877764 89999886543 2567888887743
Q ss_pred cCCCCCccC-CC-CCCCCceeEEEcCC-CcEEEEEeCCCCCeEEEEEEcCC
Q 020796 224 LTWSYAKPT-QL-LNPNSGIDGVKLKD-GRLLLAYNTVSRGVLKVALSKDD 271 (321)
Q Consensus 224 ~tWs~~~~~-~~-~~~~~~~~~~~~~~-g~~~lv~~~~~r~~l~~~~S~D~ 271 (321)
-.|+..... .. .....++.+.+..+ |..+|.+..-.........|.|-
T Consensus 170 g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y~~~~Y~~~~t~d~ 220 (276)
T cd08983 170 GPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNYSGGGYYPFDTSDL 220 (276)
T ss_pred CCceEecccccCCCCceeCCeEEEECCCCEEEEEEEECCCCCeEEEEecCc
Confidence 346543321 00 11122345555554 57777765322223344556654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.1e-05 Score=31.90 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.6
Q ss_pred EEECCCCceeEE
Q 020796 164 EVTVDAGRSWRK 175 (321)
Q Consensus 164 ~~S~D~G~tW~~ 175 (321)
++|+|+|+||++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 589999999984
|
The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A .... |
| >cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.066 Score=46.97 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=110.7
Q ss_pred ceEEEecCCcEEEEEecCCCCCC-----CCcEEEEEEeCCC-CcCCcEEc-c--CCC---CCCCCCeEEEEeCCCcEEEE
Q 020796 30 STIVEVDKGHFLVAYFGGSCEGA-----PDVKIWLQTFKDG-RWQSPIIA-D--EEP---NVPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 30 p~l~~~~~g~l~~~~~~~~~~g~-----~~~~i~~s~s~~G-tWs~~~~~-~--~~~---~~~~~~p~l~~~~~G~l~l~ 97 (321)
|+++... |++++.. .....+. ....+.+..|+|. +|+....+ . ..+ ....+.|.+... +|+.+|+
T Consensus 3 P~~~~~~-~~yy~~~-t~~~~~~~~~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~~-~g~yy~y 79 (274)
T cd08990 3 PAAHVFN-GRVYIYT-SHDEAGGGGDDFCMNDYHVFSSPDLVNWTDHGVILSVTDFPAWAKGQAWAPDVVEK-NGKYYLY 79 (274)
T ss_pred CCcEEEC-CEEEEEe-CCCCCCCCCCccccceEEEEECCCCCCcEECcccccCCCCCccccCCcCcCeEEEE-CCEEEEE
Confidence 6777654 7777643 3222111 1123667778887 99875433 2 112 245788988764 7899999
Q ss_pred EEeccccCCceeEEEEecCCCCCCCCCccCC--C---CCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 98 YKIGQEVQKWSGCMKRSYNKGVTWSEREQLP--P---GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~--~---~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
|............+.+|+|-...|+....+. . .....+-+.+++..||+.++.... ...+.+....++..+
T Consensus 80 y~~~~~~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~----~~~~~~~~l~~d~~~ 155 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGG----GLGLRVAKLKPDMLS 155 (274)
T ss_pred EEeecCCCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECC----cCCEEEEEeCccccc
Confidence 8864221223445778877555688765432 1 111112222344456887664211 123445544445677
Q ss_pred eEEeec-eec----CCCCcceee-eeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-C---CCCCCCcee
Q 020796 173 WRKYGP-IYI----PNESLSVIQ-PVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-Q---LLNPNSGID 242 (321)
Q Consensus 173 W~~~~~-~~~----~~~~~~~~~-~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~---~~~~~~~~~ 242 (321)
|..... +.. .....+..| |.++. .+|+.++++.... ...+.+++|++----|+....+ . ..++. ...
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~EgP~i~k-~~G~YYl~yS~~~-~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~g-h~~ 232 (274)
T cd08990 156 LKGEPVEIVITDGAGDELRRFFEAPWVHK-RNGTYYLSYSTGD-PEEIAYATSDSPLGPFTYRGVILDPPVNGGTN-HGS 232 (274)
T ss_pred cCCCcEEEEeccccCCCCCCcccceeEEE-ECCEEEEEEECCC-CcEEEEEEcCCCCCCcccCcEEecCCCCCCCC-CCe
Confidence 754321 211 011122333 55555 4689999876543 3556667776554345432111 1 11111 122
Q ss_pred EEEcCCCcEEEEEe
Q 020796 243 GVKLKDGRLLLAYN 256 (321)
Q Consensus 243 ~~~~~~g~~~lv~~ 256 (321)
++. .+|+.+|+|.
T Consensus 233 ~~~-~~g~~y~~yh 245 (274)
T cd08990 233 IVE-FKGQWYLFYH 245 (274)
T ss_pred EEE-ECCeEEEEEE
Confidence 344 3488888875
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of |
| >cd08981 GH43_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.088 Score=46.72 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=119.1
Q ss_pred ccccceEEEec-CCcEEEEEecCCCC-CCCCcEEEEEEeCCC-CcCCcEEcc-CCC----CCCCCCeEEEEeCCCcEEEE
Q 020796 26 SCHASTIVEVD-KGHFLVAYFGGSCE-GAPDVKIWLQTFKDG-RWQSPIIAD-EEP----NVPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 26 ~~~~p~l~~~~-~g~l~~~~~~~~~~-g~~~~~i~~s~s~~G-tWs~~~~~~-~~~----~~~~~~p~l~~~~~G~l~l~ 97 (321)
..|.|.|+..+ +|+.+++....... +.....|.+.+|+|- +|+....+. ..+ ....+.|.+.. .+|+.+++
T Consensus 5 ~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~-~~G~yyly 83 (291)
T cd08981 5 RIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHE-YKGRYYMF 83 (291)
T ss_pred cccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeee-eCCEEEEE
Confidence 46889999875 56677654322111 111224778889996 999865433 211 13467898865 48999988
Q ss_pred EEecccc-CCceeEEEEecCCCCCCCCCc--cCCCCCCCCCCCccEEccCCeEEEeeecccC---CCCcEEEEE-ECCCC
Q 020796 98 YKIGQEV-QKWSGCMKRSYNKGVTWSERE--QLPPGILGPSKNKPILLENGLLLCGSSVESW---NSWGSWMEV-TVDAG 170 (321)
Q Consensus 98 ~~~~~~~-~~~~~~~~~S~D~G~TWs~~~--~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~~~-S~D~G 170 (321)
|...... ......+..|++=---|+.+. .+.+.....+-+..++..||++++.... .+ ....+.+.. +.|..
T Consensus 84 ~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~-~~~~~~~~~i~~~eL~~d~~ 162 (291)
T cd08981 84 ATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCH-EWVQVYDGTIEAVRLSPDLS 162 (291)
T ss_pred EEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEe-cccccCCCCEEEEEeCCCcc
Confidence 8753221 112345666654323466543 1222111112233445567988765321 11 111233333 33322
Q ss_pred c--------------eeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeec-CCCCcEEEEEeccC--CcCCCCCc-c
Q 020796 171 R--------------SWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSF-NGIGRVCMSESCDG--GLTWSYAK-P 231 (321)
Q Consensus 171 ~--------------tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~-~~~~~~~~~~S~D~--G~tWs~~~-~ 231 (321)
+ .|.........+......| |.+...++|++++++... .....+.+++|+.+ =--|+... +
T Consensus 163 ~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~~~~Y~~~~~rs~s~~~~GPy~~~~~p 242 (291)
T cd08981 163 RAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFSDGGYAQGVARSESGTLLGPWVQEPEP 242 (291)
T ss_pred ccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecCCCCEEEEEEEcCCCCccCCcEECCCc
Confidence 1 1211100000000001122 456655688988877532 22245666666541 11255422 2
Q ss_pred CCCCCCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCC
Q 020796 232 TQLLNPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGD 273 (321)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~ 273 (321)
+-..++. ...++...+|+.++++... .|..+.+-+|.++++
T Consensus 243 i~~~~~G-H~s~v~~~~G~~~~vyH~~~~~~~~~~~~~~~~~~~~~ 287 (291)
T cd08981 243 LISDDGG-HGMLFRTFDGRLMLSLHTPNKHPDERPIFIEVDEDGDK 287 (291)
T ss_pred ccCCCCC-CCeeEEcCCCCEEEEEECCCCCCCeeeEEEEEeecCCe
Confidence 1111222 1245667789999988532 445556667776654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.093 Score=44.74 Aligned_cols=210 Identities=13% Similarity=0.136 Sum_probs=91.3
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-CC-CcCCcEEccC-CCCCC-----CCCe
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-DG-RWQSPIIADE-EPNVP-----MWNP 84 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-~G-tWs~~~~~~~-~~~~~-----~~~p 84 (321)
|.-||+=.++||..+....-+..-++-+++-|..+.++|-.+..|...+|. || ||+.|+.+.+ .|.++ ++..
T Consensus 1 ~g~L~kiTdTp~YnAWtQDKaFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSM 80 (367)
T PF12217_consen 1 QGELFKITDTPYYNAWTQDKAFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSM 80 (367)
T ss_dssp SEEEEE----SSEEE--TT--EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-E
T ss_pred CCceeeeecCccccccccccceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeee
Confidence 345788778887776665566666788999999888889888888888886 58 9999998864 23322 2222
Q ss_pred EEEEeCCCcEEEEEEeccccCCc-eeE--EEEecCCCCCCCCCcc--CCCCCC-CCC--C-CccEEccCCeEEEeeeccc
Q 020796 85 VLFKLPSNGLLLFYKIGQEVQKW-SGC--MKRSYNKGVTWSEREQ--LPPGIL-GPS--K-NKPILLENGLLLCGSSVES 155 (321)
Q Consensus 85 ~l~~~~~G~l~l~~~~~~~~~~~-~~~--~~~S~D~G~TWs~~~~--l~~~~~-g~~--~-~~~~~~~~G~~~~~~~~~~ 155 (321)
.++ ..+|+++.....-.... ..+ ..|-.=.-.-|+.... ++.-.. +.. + ++-....+.. +...++.+
T Consensus 81 Gv~---~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~-fA~GyHnG 156 (367)
T PF12217_consen 81 GVV---GNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQ-FAVGYHNG 156 (367)
T ss_dssp EEE---TTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS--EEEEEEE-
T ss_pred eee---cceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCc-eeEEeccC
Confidence 222 46787765432111110 000 1111112233443221 111000 000 0 0111222333 33334432
Q ss_pred C-CCCcEEEEEECC---CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCC-CCcEEEEEeccCCcCCCCC
Q 020796 156 W-NSWGSWMEVTVD---AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNG-IGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 156 ~-~~~~~~~~~S~D---~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~-~~~~~~~~S~D~G~tWs~~ 229 (321)
. ....+.+++-.| .+....... ++. .-.....||.+-.. +|.|++..|...+ .-.-.+.+|.|.|++|+..
T Consensus 157 D~sPRe~G~~yfs~~~~sp~~~vrr~-i~s-ey~~~AsEPCvkyY-~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~sl 232 (367)
T PF12217_consen 157 DVSPRELGFLYFSDAFASPGVFVRRI-IPS-EYERNASEPCVKYY-DGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSL 232 (367)
T ss_dssp SSSS-EEEEEEETTTTT-TT--EEEE---G-GG-TTEEEEEEEEE-TTEEEEEEEES-TTS---EEEEESSTTSS-EEE
T ss_pred CCCcceeeEEEecccccCCcceeeee-chh-hhccccccchhhhh-CCEEEEEEcCcCCCCCcceeeeecccCCchhhc
Confidence 2 223444444443 344444322 211 11124568887655 5899998887643 1123457899999999864
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00014 Score=31.22 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.2
Q ss_pred EEecCCCCCCCC
Q 020796 112 KRSYNKGVTWSE 123 (321)
Q Consensus 112 ~~S~D~G~TWs~ 123 (321)
++|+|+|+||++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 479999999973
|
The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A .... |
| >cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.14 Score=45.19 Aligned_cols=188 Identities=13% Similarity=0.115 Sum_probs=97.0
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCC----------CCCCCCCeEEEEeCCCcE
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEE----------PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~----------~~~~~~~p~l~~~~~G~l 94 (321)
+|.|+|+... |+.++.. ... .|.+.+|+|. +|+.... +... .....+.|.+... +|+.
T Consensus 1 ~~DP~v~~~~-~~yyl~~-t~~-------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~-~g~y 70 (288)
T cd08998 1 VHDPSIIKEG-DTYYLFS-TGN-------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYL-NGKY 70 (288)
T ss_pred CCCCeEEEEC-CEEEEEE-cCC-------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccCCeEEEE-CCEE
Confidence 4789998776 6777643 321 4778899987 9986543 2221 1235678988765 8999
Q ss_pred EEEEEecccc-CCceeEEEEecCC-CCCCCCCccCCC-CC--C--CCCCCccEEccCCeEEEeeecccCCCCcEEEE-EE
Q 020796 95 LLFYKIGQEV-QKWSGCMKRSYNK-GVTWSEREQLPP-GI--L--GPSKNKPILLENGLLLCGSSVESWNSWGSWME-VT 166 (321)
Q Consensus 95 ~l~~~~~~~~-~~~~~~~~~S~D~-G~TWs~~~~l~~-~~--~--g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~S 166 (321)
+|+|...... ......+..|+|- -..|+....+.. +. . ..+.+.++...+|+.++.. ...+ ..+.+. .+
T Consensus 71 yl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~-~~~~--~~i~~~~l~ 147 (288)
T cd08998 71 YLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSF-GSFW--GGIFLVELD 147 (288)
T ss_pred EEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEe-eecc--CCEEEEEeC
Confidence 9999864221 2233457788775 357987654322 11 0 1122233444478876642 2111 123333 33
Q ss_pred CCCCc--eeE-EeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCCC
Q 020796 167 VDAGR--SWR-KYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 167 ~D~G~--tW~-~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs~ 228 (321)
.|.|+ .|. ....+.......+..| |.++. .+|..++++.... ....+.+++|++----|+.
T Consensus 148 ~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k-~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~ 218 (288)
T cd08998 148 PKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIY-RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVD 218 (288)
T ss_pred cccCCccCCCCcceEEeccCCCCCceeeeEEEE-eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCC
Confidence 34343 221 0111111110112334 45554 4688888764321 1224666777653334553
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.056 Score=48.40 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=114.1
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCcc-CCCCC----CCCCCCccEEccCCeEEEeeecc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSEREQ-LPPGI----LGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~~-l~~~~----~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
+|.-..--+|+.+|||........+. =..++|+| -.+|+.... |.++. .|+..+.+++. ++++++. |+.
T Consensus 11 DPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~aL~P~~~~d~~g~~SGs~~~~-~~~~~~~-YTg 87 (308)
T PF00251_consen 11 DPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKD-LVHWEHLPVALPPDEEYDADGCFSGSAVVD-DDNLVLF-YTG 87 (308)
T ss_dssp EEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESS-SSSEEEEEEEE-SSSGGGTTEEEEEEEEEE-TTCEEEE-EEE
T ss_pred CCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCC-CCCceeCCceEcccccCCcCccCcceEEEE-CCEEEEE-Eec
Confidence 45322235899999998644322221 13567776 589986543 34432 22233344443 4455433 221
Q ss_pred c-CC-CCcEEEEEECCCCceeEEe---eceec---CCCCcceeeeeEEEcCCCeEEEEEeec-CCCCcEEEEEeccCCcC
Q 020796 155 S-WN-SWGSWMEVTVDAGRSWRKY---GPIYI---PNESLSVIQPVPFHTANRTLRVLMRSF-NGIGRVCMSESCDGGLT 225 (321)
Q Consensus 155 ~-~~-~~~~~~~~S~D~G~tW~~~---~~~~~---~~~~~~~~~~~~~~~~~G~l~~~~r~~-~~~~~~~~~~S~D~G~t 225 (321)
. .. .....+++|+|+|.+|++. .++.. .+.......|.++...+|+.+|+.-.. ...+.+.+.+|+| ..+
T Consensus 88 ~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~~~g~i~~y~S~D-l~~ 166 (308)
T PF00251_consen 88 NNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRDGRGCILLYTSDD-LIH 166 (308)
T ss_dssp EETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEETTEEEEEEEEESS-SSS
T ss_pred cCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEeccccCcceEEEEEcCC-ccc
Confidence 1 11 2345789999999999994 34432 123345567888666778877776433 2345677788877 789
Q ss_pred CCCCccCCCCCC-CCc----eeEEEcCCC-c------EEEEEeCC----CCCeEEEEE-EcC-CCCCCCc----ceeecc
Q 020796 226 WSYAKPTQLLNP-NSG----IDGVKLKDG-R------LLLAYNTV----SRGVLKVAL-SKD-DGDSWHD----ALTLEE 283 (321)
Q Consensus 226 Ws~~~~~~~~~~-~~~----~~~~~~~~g-~------~~lv~~~~----~r~~l~~~~-S~D-~G~tW~~----~~~l~~ 283 (321)
|+....+..... ... +.+..+.+. . ++|++... ........+ ..| ++.+|.. ...++.
T Consensus 167 W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~vG~~d~~~~~f~~~~~~~~~lD~ 246 (308)
T PF00251_consen 167 WEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYMVGDFDFDGGTFTPDDSSFQRLDY 246 (308)
T ss_dssp EEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEEEEEEETTTTEEEESSTTSEESBS
T ss_pred CceeCcccccccccccccccceEEEECCcccccceEEEEEEecccccccccccceEEeEEecCCCCeeeeeccccceecc
Confidence 987554322211 111 234454443 3 34554431 122223333 222 6777743 344443
Q ss_pred cCCCceeceE-EEEccCC--eEEEEEEeCC
Q 020796 284 NLAMEFSYPA-VIQASDG--SVHITYTYNR 310 (321)
Q Consensus 284 ~~~~~~~yp~-~~~~~dg--~l~v~y~~~~ 310 (321)
+. + -|.. .....++ ++.+.|..+.
T Consensus 247 G~--d-fYA~qtf~~~~~~r~i~~gW~~~~ 273 (308)
T PF00251_consen 247 GF--D-FYAPQTFYDPDGGRRILIGWMGEW 273 (308)
T ss_dssp SS--S--EEEEEEEETTTTEEEEEEEES-T
T ss_pred Cc--c-ccCCchhcCCCcCcEEEEEEecCC
Confidence 32 2 3444 4444444 6778887754
|
; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A .... |
| >COG4409 NanH Neuraminidase (sialidase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.079 Score=51.39 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=31.3
Q ss_pred CeEEEEeCCCcEEEEEEeccc-----cCCceeEEEEecCCCCCCCCCc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQE-----VQKWSGCMKRSYNKGVTWSERE 125 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~-----~~~~~~~~~~S~D~G~TWs~~~ 125 (321)
.|++...++|+++..|..... ...-..+..+|+|+|+||.+|.
T Consensus 277 iP~~~t~sNg~VlsswDar~~~t~D~~~~~~i~~s~SdD~GkTW~~p~ 324 (728)
T COG4409 277 IPVLYTLSNGTVLSSWDARYANTGDQKQPINIAASYSDDNGKTWHKPE 324 (728)
T ss_pred cceeeccCCceEEEeccccccccccccccCceEEEEEccCCcccccce
Confidence 588888889999988764211 1112356789999999999976
|
|
| >PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.26 Score=44.20 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCCeEEEEeCCC-cEEEEEEeccc-cCCceeEEEEecCCCCCCCCCcc--CCCCC----CCCCCCccEEccCCeEEEee
Q 020796 80 PMWNPVLFKLPSN-GLLLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQ--LPPGI----LGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 80 ~~~~p~l~~~~~G-~l~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~--l~~~~----~g~~~~~~~~~~~G~~~~~~ 151 (321)
...||..+...++ +++++|..... .......+.+|+|+ .+|+.... +.+.. .|+--.+++.. +++.++..
T Consensus 31 ~vfNpgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-i~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~yymtY 108 (312)
T PF04041_consen 31 AVFNPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDDG-IHFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTYYMTY 108 (312)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESSS-SS-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEEEEEE
T ss_pred eEEcCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccCC-cCceECCCCEEccCCCCcccCccceeEEEE-CCEEEEEE
Confidence 4567877654444 27777654222 11113457889875 78853321 11211 22111233333 56655432
Q ss_pred ecccCCCCcEEEEEECCCCceeEEeeceecCCC----------CcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEecc
Q 020796 152 SVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNE----------SLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCD 221 (321)
Q Consensus 152 ~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~----------~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D 221 (321)
......+....+..|+ +..+|+....+..... ..+..-|.- -+|+++++.| ...++++.|.|
T Consensus 109 ta~~~~~~~~~la~s~-D~~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~k---i~Gky~m~~r----~~~i~la~S~D 180 (312)
T PF04041_consen 109 TAYSGKGPRIGLATSK-DFKHWERHGKIFPPFNGNEDYRDFWSKDGALFPEK---INGKYAMLHR----DPSIWLAYSPD 180 (312)
T ss_dssp EEEESSSEEEEEEEES-SSSSEEEEECTTTTTCTS-EEEEEEEECCEEEESE---ETTEEEEEEE----SSSBEEEEESS
T ss_pred EEecCCCcccceEEcc-chHhhEEeccccCcccccccccccccCceEEEEEE---ECCEEEEEEC----CCCEEEEecCC
Confidence 1122234455666666 5799998763321111 112222221 2789999998 36789999966
Q ss_pred CCcCCCCCcc-CCCCCC----CC----ceeEEEcCCCcEEEEEe
Q 020796 222 GGLTWSYAKP-TQLLNP----NS----GIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 222 ~G~tWs~~~~-~~~~~~----~~----~~~~~~~~~g~~~lv~~ 256 (321)
+..|..... +-.+.+ .. +...+.+++| ++++|.
T Consensus 181 -l~~W~~~~~~~~~~~~~~~d~~kiG~g~pPi~t~~G-wL~iyH 222 (312)
T PF04041_consen 181 -LIHWGNHREPLLSPRPGWWDSSKIGAGPPPIKTDEG-WLLIYH 222 (312)
T ss_dssp -SSSEEEEBETSB--STTSSCSSEEEE-S-EEEETTE-EEEEEE
T ss_pred -cccccccccccccCCCCcChhhcccCCCCceEecCC-EEEEEe
Confidence 799987543 211111 11 1233667778 666666
|
On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B. |
| >cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.3 Score=43.26 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=100.0
Q ss_pred cceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCCC----CCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 29 ASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEEP----NVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 29 ~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~~----~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
.|+|+... |+.+++.... .. ...|.+.+|+|. +|+.... +...+ ....+.|.++.. +|+.+|+|+...
T Consensus 2 DP~v~~~~-g~yyl~~t~~-~~---~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~waP~v~~~-~g~yyl~ys~~~ 75 (294)
T cd08991 2 DPFVLRYN-GKYYAYGTGG-AD---GRGFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWAPEVYYY-NGKFYMYYSAND 75 (294)
T ss_pred CCeEEEEC-CEEEEEEeCC-CC---CCeeEEEECCCCCCceECCccccCCCCCccCCcEEccEEEEE-CCEEEEEEEecc
Confidence 47888776 7777754332 11 123677889997 9987543 22211 235677888765 699999998642
Q ss_pred cc-CCceeEEEEecCCCCCCCCCcc--CCCCCCCCCCCccEEccCCeEEEeeecccCCC--CcEEEEEECCCCceeEEee
Q 020796 103 EV-QKWSGCMKRSYNKGVTWSEREQ--LPPGILGPSKNKPILLENGLLLCGSSVESWNS--WGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 103 ~~-~~~~~~~~~S~D~G~TWs~~~~--l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~--~~~~~~~S~D~G~tW~~~~ 177 (321)
.. ......+..|+|--..|+.... +..+. ..+.+.++...||+.++......... ..+.+..-..++.+|....
T Consensus 76 ~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~-~~iD~~vf~d~dG~~yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~ 154 (294)
T cd08991 76 RDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEP-KSIDAHPFIDDDGKPYLYYSRNNYGNRVSDIYGTELVDDKLSIKTEL 154 (294)
T ss_pred CCCCcceEEEEEeCCCCCCCCcCCCCcccCCC-cccCCceEECCCCCEEEEEEecCCCCcccceEEEEEccceeeeccce
Confidence 21 2234567788765445765432 22211 12333445556688766532211111 1233333333455554221
Q ss_pred c---eecC-------------C--CCcceee-eeEEEcCCCeEEEEEeecCC---CCcEEEEEeccCCcCCCCC
Q 020796 178 P---IYIP-------------N--ESLSVIQ-PVPFHTANRTLRVLMRSFNG---IGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 178 ~---~~~~-------------~--~~~~~~~-~~~~~~~~G~l~~~~r~~~~---~~~~~~~~S~D~G~tWs~~ 229 (321)
. +... + ......| |.++.. +|.+++++..... ...+.+++|++---.|+..
T Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~-~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~ 227 (294)
T cd08991 155 VGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKH-NGRYYLTYSANHYENEDYGVGYATADSPLGPWTKY 227 (294)
T ss_pred eeccccccccccccccccccccccccCceeeCcEEEEE-CCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEec
Confidence 0 0000 0 0112233 455554 6888888754321 2256677887644568764
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.24 Score=43.91 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=91.4
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
.....|.|+... |+.++.|..... +.....|.++++++ |.|+.........+....+|.++.+.+|+.+|+|....
T Consensus 53 ~~~waP~v~~~~-g~yyl~ys~~~~-~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~ 130 (294)
T cd08991 53 RGFWAPEVYYYN-GKFYMYYSANDR-DEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNN 130 (294)
T ss_pred CcEEccEEEEEC-CEEEEEEEeccC-CCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecC
Confidence 345679998765 888876655432 22345677888875 56775321111122234578999888899999987422
Q ss_pred ccCC-ceeEEEEecCCCCCCCCCccC---C---CC--------C------CCCCCCccEEccCCeEEEeeecccC--CCC
Q 020796 103 EVQK-WSGCMKRSYNKGVTWSEREQL---P---PG--------I------LGPSKNKPILLENGLLLCGSSVESW--NSW 159 (321)
Q Consensus 103 ~~~~-~~~~~~~S~D~G~TWs~~~~l---~---~~--------~------~g~~~~~~~~~~~G~~~~~~~~~~~--~~~ 159 (321)
.... ....+..-..++.+|...... . ++ . ....+++.+...+|..++....... ...
T Consensus 131 ~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y 210 (294)
T cd08991 131 YGNRVSDIYGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDY 210 (294)
T ss_pred CCCcccceEEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCc
Confidence 1111 122333333345555422110 0 00 0 0113344455557887665332211 123
Q ss_pred cEEEEEECCCCceeEEe--eceecCCC---CcceeeeeEEEcCC-CeEEEEEe
Q 020796 160 GSWMEVTVDAGRSWRKY--GPIYIPNE---SLSVIQPVPFHTAN-RTLRVLMR 206 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~--~~~~~~~~---~~~~~~~~~~~~~~-G~l~~~~r 206 (321)
.+.+++|++---.|+.. .++..... ..+.-+.+++..++ |+.++++.
T Consensus 211 ~~~~a~s~~~~gp~~~~~~~pl~~~~~~~~~~g~gh~~~~~~~~g~~~~~~yh 263 (294)
T cd08991 211 GVGYATADSPLGPWTKYSNNPILRRNGDKGVEGTGHNSVVKSPDGGELYIVYH 263 (294)
T ss_pred eEEEEEcCCCCCCcEecCCCceEeeCCCCceEeCCCCceEECCCCCEEEEEEe
Confidence 56677887544568764 23322111 12222345666666 56666554
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >smart00640 Glyco_32 Glycosyl hydrolases family 32 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.3 Score=45.99 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCeE-EEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCc-cCCCCC----CCCCCCccEEccCCeEEEee
Q 020796 81 MWNPV-LFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSERE-QLPPGI----LGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 81 ~~~p~-l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~-~l~~~~----~g~~~~~~~~~~~G~~~~~~ 151 (321)
..+|. ++.. +|+.+|||+.......|. -..+.|+ +..+|+... .|.++. .|+..+.++.. +|++.+.
T Consensus 9 ~NDPnGl~~~-~G~yHlFyq~~p~~~~~g~~~Wgha~S~-Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~~-~~~~~~~- 84 (437)
T smart00640 9 MNDPNGLIYY-KGKYHLFYQYNPFGPVWGNIHWGHAVSK-DLVHWTHLPVALAPDEWYDSNGVFSGSAVID-PGNLSLL- 84 (437)
T ss_pred cCCCCeeeEE-CCEEEEEEecCCCCCCCCCeEEEEEEcC-CcceeeecCcccCCCCcCCCCcEEEEEEEEC-CCceEEE-
Confidence 34455 3333 899999998543222221 1355666 489997643 344431 23333444443 4544332
Q ss_pred eccc---CC---C--CcEEEEEECCCCceeEEe--eceecCCC---CcceeeeeEEEcCCCeEEEEEeec--CCCCcEEE
Q 020796 152 SVES---WN---S--WGSWMEVTVDAGRSWRKY--GPIYIPNE---SLSVIQPVPFHTANRTLRVLMRSF--NGIGRVCM 216 (321)
Q Consensus 152 ~~~~---~~---~--~~~~~~~S~D~G~tW~~~--~~~~~~~~---~~~~~~~~~~~~~~G~l~~~~r~~--~~~~~~~~ 216 (321)
|... .. . ....+..|+|+|.+|++. .|+..+.. ......|.+...++|+.+|++... ...+.+.+
T Consensus 85 YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~~~~~~G~i~l 164 (437)
T smart00640 85 YTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGASDEDKTGIALL 164 (437)
T ss_pred EcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEEEecCCCeEEEE
Confidence 2211 01 1 122367888999999986 35532211 123445777665556777766432 23466887
Q ss_pred EEeccCCcCCCCCcc
Q 020796 217 SESCDGGLTWSYAKP 231 (321)
Q Consensus 217 ~~S~D~G~tWs~~~~ 231 (321)
..|+| .++|+....
T Consensus 165 y~S~D-l~~W~~~~~ 178 (437)
T smart00640 165 YRSTD-LKNWTLLGE 178 (437)
T ss_pred EECCC-cccCeECCc
Confidence 88876 789986544
|
|
| >cd08985 GH43_6 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.37 Score=42.11 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=85.4
Q ss_pred CccccceEEEec-CCcEEEEEecCCCCCCCCcEEEEEEeC--CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEec
Q 020796 25 KSCHASTIVEVD-KGHFLVAYFGGSCEGAPDVKIWLQTFK--DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 25 ~~~~~p~l~~~~-~g~l~~~~~~~~~~g~~~~~i~~s~s~--~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
.....|.|+..+ +|+.++ |+.....+.....|.+++++ .|-|+....+.+ .+....+|.++.+.||+.+|+|...
T Consensus 63 ~~~waP~v~y~~~~g~Y~m-~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~-~~~~~~Dp~vf~DdDG~~Yl~~~~~ 140 (265)
T cd08985 63 RIIERPKVIYNAKTGKYVM-WMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRP-LGYQSRDFGLFVDDDGTAYLLYSDR 140 (265)
T ss_pred cEEECCeEEEeCCCCEEEE-EEEeCCCCCcceeEEEEEeCCCCCCCEECCccCC-CCCCccCCceEEcCCCCEEEEEecC
Confidence 456779998876 477665 44432222234467777776 477876443221 2334578999999999999998742
Q ss_pred cccCCceeEEEEecCCCCCCCCCcc-CCCCCCCCCCCccEEccCCeEEEeeecc-cCCCCcEEEEEECCCCceeEEee
Q 020796 102 QEVQKWSGCMKRSYNKGVTWSEREQ-LPPGILGPSKNKPILLENGLLLCGSSVE-SWNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 102 ~~~~~~~~~~~~S~D~G~TWs~~~~-l~~~~~g~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
. .....+.+-+++..++..... +..+ ...+++.+...+|..++..... .+......+++|++==--|+...
T Consensus 141 ~---~~~i~i~~L~~d~~~~~~~~~~~~~~--~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~ 213 (265)
T cd08985 141 D---NSDLYIYRLTDDYLSVTGEVTTVFVG--AGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLG 213 (265)
T ss_pred C---CCceEEEEeCCCcccccceEEEccCC--CccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccC
Confidence 1 123456666667777765433 1111 1245555555677765543322 23344567788876444566554
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08980 GH43_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.36 Score=42.68 Aligned_cols=180 Identities=12% Similarity=0.141 Sum_probs=91.3
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-----CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-----DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-----~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
....+|.|... +|++++.|......+.....+.+..++ .|.|+.+..+....+....+|.++.+ +|+.|++|.
T Consensus 53 ~~~WAP~i~~~-~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~d-dG~~Yl~~~ 130 (288)
T cd08980 53 GNLWAPELHYI-DGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEH-NGQLYFVWS 130 (288)
T ss_pred ccEECceEEEE-CCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEE-CCEEEEEEE
Confidence 45688999765 588888765432211222234444433 36899886654323334467888887 599999997
Q ss_pred ecccc--CCceeEEEEecCCCCCCC-CCccCCCCC-----C--CCCCCccEEccCCeEEEeeecccC--CCCcEEEEEEC
Q 020796 100 IGQEV--QKWSGCMKRSYNKGVTWS-EREQLPPGI-----L--GPSKNKPILLENGLLLCGSSVESW--NSWGSWMEVTV 167 (321)
Q Consensus 100 ~~~~~--~~~~~~~~~S~D~G~TWs-~~~~l~~~~-----~--g~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~S~ 167 (321)
..... ......+.+..+. .++. ++..+.... . ...+++.+...+|..++....... ..+.+.+++|+
T Consensus 131 ~~~~~~~~~~~i~~~~l~~~-~~~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y~v~~a~~~ 209 (288)
T cd08980 131 GWEGRTNGNQNLYIAKMSNP-WTLTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDYCLGLLTAD 209 (288)
T ss_pred ccCCCCCCCccEEEEECCCC-CccCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCCEEEEEEEc
Confidence 42210 1112334454443 2342 333332211 1 123444445557776654332211 23455666665
Q ss_pred CC-C----ceeEEee-ceecCC---CCcceeeeeEEEcCCCe-EEEEEee
Q 020796 168 DA-G----RSWRKYG-PIYIPN---ESLSVIQPVPFHTANRT-LRVLMRS 207 (321)
Q Consensus 168 D~-G----~tW~~~~-~~~~~~---~~~~~~~~~~~~~~~G~-l~~~~r~ 207 (321)
.. + .+|+... ++.... ...+.-+.+++..++|+ .++++..
T Consensus 210 ~~~~~~~~~~~~~~~~pil~~~~~~~~~g~GH~~iv~~~~G~~~~~~yH~ 259 (288)
T cd08980 210 GGADLLDPASWTKSPTPVFQSSPENGVYGPGHNSFTKSPDGTEDWIVYHA 259 (288)
T ss_pred CCCCCCChhhCcCCCCCceecCCCCccCcCCccceEECCCCCEEEEEEcc
Confidence 32 1 3576532 332111 11233345677777786 7777644
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.49 Score=41.81 Aligned_cols=219 Identities=13% Similarity=0.078 Sum_probs=110.4
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCC----------CCCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEE----------PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~----------~~~~~~~p~l~~~~~G~l 94 (321)
.+..|+|+..+ |+.+.+ ... .+.. ..|.+.+|+|. +|+....+... .....+.|.++.. +|+.
T Consensus 7 ~~~DP~i~~~~-~~yy~~-~t~-~~~~--~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~g~y 80 (288)
T cd09000 7 FYPDPSICRVG-DDYYLV-TSS-FEYF--PGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPTIRYH-DGTF 80 (288)
T ss_pred CCCCCCEEEEC-CEEEEE-ECC-cccC--CCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcceEEEE-CCEE
Confidence 34679998877 666643 221 1111 13677888897 99976432210 1224677888765 8999
Q ss_pred EEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccC-----CCCcEEEEEECCC
Q 020796 95 LLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESW-----NSWGSWMEVTVDA 169 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~S~D~ 169 (321)
+|+|............+..|+|---.|+.+..+.. ..+-..++...+|+.++....... ....+.+...+.+
T Consensus 81 y~yy~~~~~~~~~~~~v~~s~~p~gpw~~~~~~~~---~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~~~~~i~~~~l~~~ 157 (288)
T cd09000 81 YLITTNVDGMKDGGNFIVTADDPAGPWSDPVWLDS---GGIDPSLFFDDDGKVYLVGNGWDERRGYNGHGGIWLQEIDLE 157 (288)
T ss_pred EEEEEecCCCCCCceEEEEeCCCCCCCcCCEecCC---CccCCceeEcCCCCEEEEecccCCccccCCCCcEEEEEEccc
Confidence 99988632211223456677766556886654432 112233445557887664221100 0123444444332
Q ss_pred CceeE-EeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC-C--------C
Q 020796 170 GRSWR-KYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT-Q--------L 234 (321)
Q Consensus 170 G~tW~-~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~-~--------~ 234 (321)
..+.. ....+. .+......| |.++. .+|.+++++.... ....+.+++|++-=-.|+... ++ . .
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~Egp~v~k-~~g~YYl~ys~~~~~~~~~v~~~~s~~~~Gp~~~~~~~~il~~~~~~~~~~ 235 (288)
T cd09000 158 TGKLLGEPKVIW-NGTGGRWPEGPHLYK-RDGWYYLLIAEGGTGYGHSVTVARSRSITGPYEPAPNNPILTNRDLPDSPI 235 (288)
T ss_pred cCCCCCCcEEEE-eCCCCCCcccCeEEE-ECCEEEEEEecCCCCCCeEEEEEEeCCCCCCCccCCCCceEEcCCCCCCcc
Confidence 22221 111111 111111233 45554 4688888875432 123566677765433576521 11 0 0
Q ss_pred CCCCCceeEEEcCCCcEEEEEe
Q 020796 235 LNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 235 ~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
.++. ...++..++|+.+++|.
T Consensus 236 ~g~g-H~~~~~~~dG~~~~~yH 256 (288)
T cd09000 236 QATG-HADLVQTPDGEWWAVFL 256 (288)
T ss_pred eeCC-ccceEECCCCCEEEEEE
Confidence 0111 12356667888888874
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.48 Score=41.55 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=116.3
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCC-ceeEEEEecCCCCCCCCCccCCC-C-----CCCCCCCccEEccCCeEEEeeec
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQK-WSGCMKRSYNKGVTWSEREQLPP-G-----ILGPSKNKPILLENGLLLCGSSV 153 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~-~~~~~~~S~D~G~TWs~~~~l~~-~-----~~g~~~~~~~~~~~G~~~~~~~~ 153 (321)
..+|.++.. +|+-+++.+....... ....+.+|+| -.+|+....+.+ . ..+... +-+...+|++++....
T Consensus 8 ~~DP~i~~~-~g~yY~~~t~~~~~~~~~~~~~~~S~D-l~~W~~~g~~l~~~~~~~~~~~~wA-P~v~~~~g~yy~yys~ 84 (275)
T cd09004 8 YADPEIRIF-GGTYYIYPTSDGAGGEQTPFDVFSSKD-LVNWTKEGIILDMADVSWANRAAWA-PSVIERNGKYYFYFSA 84 (275)
T ss_pred CCCCCeEEE-CCEEEEEEeccCCCCCeeEEEEEECCC-CCCceECcccccccCCcccCCCcCC-CeEEEECCEEEEEEEc
Confidence 567887765 6888877653211110 1223566766 689987665332 1 111222 2233457886654322
Q ss_pred ccCCCCcEEEEEECCCCceeEEe--eceecCC-CCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCc
Q 020796 154 ESWNSWGSWMEVTVDAGRSWRKY--GPIYIPN-ESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 154 ~~~~~~~~~~~~S~D~G~tW~~~--~~~~~~~-~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~ 230 (321)
...+.++.|+|-.-.|+.. .++.... .....+.|.++...+|+.++++... +.+.+....+++.+|....
T Consensus 85 ----~~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~---~~~~i~~l~~d~~~~~~~~ 157 (275)
T cd09004 85 ----NGGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYWGGW---GHCNVAKLNEDMISFDGER 157 (275)
T ss_pred ----CCcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEEcCc---CCEEEEEECCCcccccCcc
Confidence 1346778888755568762 2222111 1223556788887889998887542 3344444445577786543
Q ss_pred cC-CCC--CCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCcce--eecccC--CCceeceEEEEcc-
Q 020796 231 PT-QLL--NPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDAL--TLEENL--AMEFSYPAVIQAS- 298 (321)
Q Consensus 231 ~~-~~~--~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~--~l~~~~--~~~~~yp~~~~~~- 298 (321)
.. ... ....+..+.. .+|+.+|+|... ....+.++.|.+---.|++.. ++.+.. ..+.++..++..+
T Consensus 158 ~~~~~~~~~~~EgP~i~k-~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~~~~~~~~~~~~~g~gH~~~~~~~~ 236 (275)
T cd09004 158 DGSEITPKNYFEGPFMFK-RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPGNIILQQDPGIATGPGHHSVVNVPG 236 (275)
T ss_pred eeeeccCCCceecceEEE-ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCCcEeeeCCCCCcccCCCCEEEEeCC
Confidence 21 111 1112234444 578888887542 233566777764333477643 332211 1234566777766
Q ss_pred CCeEEEEEEe
Q 020796 299 DGSVHITYTY 308 (321)
Q Consensus 299 dg~l~v~y~~ 308 (321)
+|..+++|-.
T Consensus 237 ~~~~~~~yh~ 246 (275)
T cd09004 237 TDEWYIVYHR 246 (275)
T ss_pred CCeEEEEEeC
Confidence 4788888765
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.69 Score=40.85 Aligned_cols=216 Identities=18% Similarity=0.177 Sum_probs=110.3
Q ss_pred CCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC-CC----------CCCCCCccEEccCCeEEEe
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP-GI----------LGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~-~~----------~g~~~~~~~~~~~G~~~~~ 150 (321)
.+|.++.. +|+.+++++.. ...+.+|+|- ..|+....+.. .. .+....+-+...+|++++.
T Consensus 2 ~DP~v~~~-~~~yyl~~t~~------~i~i~~S~Dl-~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~~g~yyl~ 73 (288)
T cd08998 2 HDPSIIKE-GDTYYLFSTGN------GIAIAKSKDL-GNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYLNGKYYLY 73 (288)
T ss_pred CCCeEEEE-CCEEEEEEcCC------CeEEEECCCC-CCcEECCccccCCCccccccccCCCCCccCCeEEEECCEEEEE
Confidence 46777665 67777775531 3457788875 88976654321 10 0111122233348887654
Q ss_pred eeccc-C-CCCcEEEEEECCC-CceeEEeeceecCC---CCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEE-eccCC
Q 020796 151 SSVES-W-NSWGSWMEVTVDA-GRSWRKYGPIYIPN---ESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE-SCDGG 223 (321)
Q Consensus 151 ~~~~~-~-~~~~~~~~~S~D~-G~tW~~~~~~~~~~---~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~-S~D~G 223 (321)
..... . ....+.++.|+|- --.|+...++...+ .....+.|.++..++|+.++++.... ..++++. +.|.|
T Consensus 74 ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~~--~~i~~~~l~~~~~ 151 (288)
T cd08998 74 YSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSFW--GGIFLVELDPKTG 151 (288)
T ss_pred EEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeecc--CCEEEEEeCcccC
Confidence 32211 1 1234667888775 35798765442221 12245678888888999999875432 3344443 34434
Q ss_pred cC--CC-CCccCCC-C---CCCCceeEEEcCCCcEEEEEeCC-------CCCeEEEEEEcCCCCCCCcc--eee-c----
Q 020796 224 LT--WS-YAKPTQL-L---NPNSGIDGVKLKDGRLLLAYNTV-------SRGVLKVALSKDDGDSWHDA--LTL-E---- 282 (321)
Q Consensus 224 ~t--Ws-~~~~~~~-~---~~~~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~S~D~G~tW~~~--~~l-~---- 282 (321)
+. |. .+..+.. + ....+..+.+ .+|..+|++... ....+.+++|.+=---|... ..+ .
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~Egp~~~k-~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~~~~~~~ 230 (288)
T cd08998 152 KPLYPGGYGYNIAGRPRGHGAIEAPYIIY-RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDMLNGGGT 230 (288)
T ss_pred CccCCCCcceEEeccCCCCCceeeeEEEE-eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCchhhCCCc
Confidence 32 21 1111110 0 0112233343 578999887532 12356677775312224432 111 1
Q ss_pred ----ccCC--CceeceEEEEccCCeEEEEEEe
Q 020796 283 ----ENLA--MEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 283 ----~~~~--~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
+... .+.++..+++.+||..+++|-.
T Consensus 231 ~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~ 262 (288)
T cd08998 231 LYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHY 262 (288)
T ss_pred ceeeccCCeEEcCCCCEEEECCCCCEEEEEEE
Confidence 0000 1235667888888888888754
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b |
| >cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.69 Score=40.85 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=88.3
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
....+|.|+.. +|+.++.|...... ....+.+.++++ |.|+++..+.. ...+|.++.+.+|+.|++|....
T Consensus 66 ~~~WAP~v~~~-~g~yy~yy~~~~~~--~~~~~~v~~s~~p~gpw~~~~~~~~----~~iDp~vf~d~dG~~Y~~~~~~~ 138 (288)
T cd09000 66 GGIWAPTIRYH-DGTFYLITTNVDGM--KDGGNFIVTADDPAGPWSDPVWLDS----GGIDPSLFFDDDGKVYLVGNGWD 138 (288)
T ss_pred CceEcceEEEE-CCEEEEEEEecCCC--CCCceEEEEeCCCCCCCcCCEecCC----CccCCceeEcCCCCEEEEecccC
Confidence 34577999876 68888766553221 112344555554 69998765432 44679999988999999987421
Q ss_pred cc----CCceeEEEEecCCCCCC-CCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCceeEE
Q 020796 103 EV----QKWSGCMKRSYNKGVTW-SEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSWRK 175 (321)
Q Consensus 103 ~~----~~~~~~~~~S~D~G~TW-s~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW~~ 175 (321)
.. +....++...+....+. +++..+.... ....+++.+...+|..++...... .....+.+++|++==--|+.
T Consensus 139 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~~~~~~~~v~~~~s~~~~Gp~~~ 218 (288)
T cd09000 139 ERRGYNGHGGIWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEGGTGYGHSVTVARSRSITGPYEP 218 (288)
T ss_pred CccccCCCCcEEEEEEccccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecCCCCCCeEEEEEEeCCCCCCCcc
Confidence 11 11233454444333333 2222222211 112344444445777655432211 11234667777742224654
Q ss_pred e--eceecCCC-----CcceeeeeEEEcCCCeEEEEEe
Q 020796 176 Y--GPIYIPNE-----SLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 176 ~--~~~~~~~~-----~~~~~~~~~~~~~~G~l~~~~r 206 (321)
. .++..... ..|.-+.+++..++|+.++++.
T Consensus 219 ~~~~~il~~~~~~~~~~~g~gH~~~~~~~dG~~~~~yH 256 (288)
T cd09000 219 APNNPILTNRDLPDSPIQATGHADLVQTPDGEWWAVFL 256 (288)
T ss_pred CCCCceEEcCCCCCCcceeCCccceEECCCCCEEEEEE
Confidence 2 12221110 1122234566666777666653
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.48 Score=44.76 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=81.0
Q ss_pred EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEEeccc--
Q 020796 32 IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYKIGQE-- 103 (321)
Q Consensus 32 l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~~~~~-- 103 (321)
++... |+.+++|.=... ...+...=.=.+|+|= +|+. |..+.++. ...+..-..+ ..+|++.+||+....
T Consensus 47 ~iy~~-G~yHlFYQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~piaL~Pd~~~d~~g~ySGSAV-~~~~~l~lfytg~v~~~ 124 (486)
T COG1621 47 LIYFD-GKYHLFYQYNPFGAAHGPKHWGHAVSKDLVHWEHLPIALAPDDDYDSHGCYSGSAV-VDDGNLSLFYTGNVRDS 124 (486)
T ss_pred eeEEC-CEEEEEEecCCCCCCCCCceeeeeccCCcccceECCceecCCCccccCCceeeeEE-EeCCcEEEEEccceecc
Confidence 44344 688876522221 1111222223456776 9986 44555433 2223333333 348889999984221
Q ss_pred --cCCceeEEEEecCCCCCCCCC--ccCCCCCCC---CCCCcc-EEccCCeEEEeeecccCCCCcEEEEEECCCCceeEE
Q 020796 104 --VQKWSGCMKRSYNKGVTWSER--EQLPPGILG---PSKNKP-ILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRK 175 (321)
Q Consensus 104 --~~~~~~~~~~S~D~G~TWs~~--~~l~~~~~g---~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~ 175 (321)
.+....++++|+| |.++++. .++.+...+ ..+.+- +-..+|++++..-.++....+..+++++|+.+.|+.
T Consensus 125 ~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~DL~~W~~ 203 (486)
T COG1621 125 NGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDDLKNWQF 203 (486)
T ss_pred CCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecCCCCceEEEEeCCCccCcEE
Confidence 1122357999999 4555552 222221112 223333 333456665443222222223455566666999999
Q ss_pred eeceecCCCCcc-eee-eeEEEcCCC
Q 020796 176 YGPIYIPNESLS-VIQ-PVPFHTANR 199 (321)
Q Consensus 176 ~~~~~~~~~~~~-~~~-~~~~~~~~G 199 (321)
.+.+.......+ ..| |.++.++.-
T Consensus 204 ~g~~~~~~~~~gym~ECPdlf~l~~~ 229 (486)
T COG1621 204 TGEFGLEQGGLGYMWECPDLFELDGE 229 (486)
T ss_pred EEeeccCCCceeeEEECCCeEEecCc
Confidence 886644311222 122 677776543
|
|
| >cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.47 Score=41.54 Aligned_cols=163 Identities=10% Similarity=0.029 Sum_probs=82.5
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccC
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQ 105 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~ 105 (321)
...+|.|... +|+.++.|... ...+.|..+.+-.|-|+.+..+. ...+|.++.+.+|+.+|+|...
T Consensus 75 ~~WAP~v~~~-~gkyy~yys~~----~~~~~v~~a~~p~Gpw~~~~~~~-----~~iDp~~f~D~dG~~Yl~~~~~---- 140 (269)
T cd09001 75 GQWAPSLRYH-NGTFYVFFCTN----TGGTYIYTADDPEGPWTKTALDG-----GYHDPSLLFDDDGTAYLVYGGG---- 140 (269)
T ss_pred CEECCceEEE-CCEEEEEEEec----CCCeEEEEcCCCCCCCcCCCcCC-----CcccCceEEcCCCCEEEEeCCC----
Confidence 3567999876 68888765443 12233333333347888754332 3467889988899999998631
Q ss_pred CceeEEEEecCCCCCCC-CCcc-CCCCC--CCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceec
Q 020796 106 KWSGCMKRSYNKGVTWS-EREQ-LPPGI--LGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYI 181 (321)
Q Consensus 106 ~~~~~~~~S~D~G~TWs-~~~~-l~~~~--~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~ 181 (321)
...+.+-+.+..+.. .... +.... .+..+++.+...+|..++.............+++|++=---|+... +..
T Consensus 141 --~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~~~~~~~~~~~s~~~~GP~~~~~-~~~ 217 (269)
T cd09001 141 --TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWGGGGRTQTCLRSKSLTGPYESKV-VLE 217 (269)
T ss_pred --cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecCCCCCceEEEEEeCCCCCCcCCcc-eec
Confidence 334444333444442 2222 22111 1234555555567876554332211223566788875222243322 211
Q ss_pred CC--CCcceeeeeEEEcCCCeEEEEE
Q 020796 182 PN--ESLSVIQPVPFHTANRTLRVLM 205 (321)
Q Consensus 182 ~~--~~~~~~~~~~~~~~~G~l~~~~ 205 (321)
.+ ...+.-+.++++.++|+.++++
T Consensus 218 ~~~~~~~~~gh~~~~~~~~G~~~~~~ 243 (269)
T cd09001 218 DGSTGGNGPHQGGIVDTPDGEWYFML 243 (269)
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEE
Confidence 11 1111222356677777755543
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.79 Score=40.14 Aligned_cols=188 Identities=11% Similarity=0.046 Sum_probs=102.8
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cCC----CCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DEE----PNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~~----~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.+.|.++... |+.++..... ..+.....+.+.+|+|- +|+....+ ... .....+.|.++.. +|+.+|+|+.
T Consensus 8 ~~DP~i~~~~-g~yY~~~t~~-~~~~~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~wAP~v~~~-~g~yy~yys~ 84 (275)
T cd09004 8 YADPEIRIFG-GTYYIYPTSD-GAGGEQTPFDVFSSKDLVNWTKEGIILDMADVSWANRAAWAPSVIER-NGKYYFYFSA 84 (275)
T ss_pred CCCCCeEEEC-CEEEEEEecc-CCCCCeeEEEEEECCCCCCceECcccccccCCcccCCCcCCCeEEEE-CCEEEEEEEc
Confidence 5679998765 7888754222 11211234667788886 99976543 221 1235778988765 6999999875
Q ss_pred ccccCCceeEEEEecCCCCCCCCC--ccC-CCCCCC--CCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEE
Q 020796 101 GQEVQKWSGCMKRSYNKGVTWSER--EQL-PPGILG--PSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRK 175 (321)
Q Consensus 101 ~~~~~~~~~~~~~S~D~G~TWs~~--~~l-~~~~~g--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~ 175 (321)
. ....+..|+|-...|+.. .++ .....+ .+.+.++...+|++++.. .. .....+...++++.+|..
T Consensus 85 ~-----~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~-~~---~~~~~i~~l~~d~~~~~~ 155 (275)
T cd09004 85 N-----GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYW-GG---WGHCNVAKLNEDMISFDG 155 (275)
T ss_pred C-----CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEE-cC---cCCEEEEEECCCcccccC
Confidence 2 235677888755678762 122 211111 122223344578876542 21 013445455566777764
Q ss_pred eece-ecCCCCcceee-eeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCC
Q 020796 176 YGPI-YIPNESLSVIQ-PVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 176 ~~~~-~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~ 229 (321)
.... .... ....| |.++. .+|..++++.... ....+.+++|++---.|+..
T Consensus 156 ~~~~~~~~~--~~~~EgP~i~k-~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~ 211 (275)
T cd09004 156 ERDGSEITP--KNYFEGPFMFK-RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERP 211 (275)
T ss_pred cceeeeccC--CCceecceEEE-ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccC
Confidence 4311 1111 12334 55665 4688777765432 12356667776654457764
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >PTZ00334 trans-sialidase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.054 Score=53.68 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred EeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEEC
Q 020796 88 KLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV 167 (321)
Q Consensus 88 ~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~ 167 (321)
.+.||+|..-.......+..-..|++|+|+|. |.-+.-+++. ++..+.++.+.+|+|++....+. + +-.++.|.
T Consensus 267 ~medGTLVFPv~a~~~~g~~vslIiYS~d~g~-W~ls~g~s~~--gC~~P~I~EWe~gkLlM~t~C~d--G-~RrVYES~ 340 (780)
T PTZ00334 267 QMKDGTLVFPVEGTKKDGKAVSLIIYSSATES-GNLSKGMSAD--GCSDPSVVEWKEGKLMMMTACDD--G-RRRVYESG 340 (780)
T ss_pred EecCCeEEEEEEEEcCCCCEEEEEEEecCCCC-eEEcCCCCCC--CCCCCEEEEEcCCeEEEEEEeCC--C-CEEEEEEC
Confidence 45688865332221111222235788999985 9654444332 45566677787899887644321 2 23699999
Q ss_pred CCCceeEEe
Q 020796 168 DAGRSWRKY 176 (321)
Q Consensus 168 D~G~tW~~~ 176 (321)
|.|.||++.
T Consensus 341 DmG~tWtEA 349 (780)
T PTZ00334 341 DKGDSWTEA 349 (780)
T ss_pred CCCCChhhC
Confidence 999999975
|
|
| >cd08986 GH43_7 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.89 Score=39.79 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=85.5
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEecc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQ 102 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~ 102 (321)
....+|.|.... |+.++.|..... +.....+.+++++. |-|+.+... .+.....+|.++.+.+|+.||+|...
T Consensus 77 ~~~WAP~v~~~~-g~yyl~~s~~~~-~~~~~~i~va~a~~p~Gp~~~~~~~--~~~~~~iD~~~f~D~DG~~Yl~~~~~- 151 (269)
T cd08986 77 NAVWAPELHYIK-GRWYLVACMNNP-GYGGSSILLSTSGKIEGPYKHITGN--KPLFPGIDPSLFEDDDGKVYLVWHNT- 151 (269)
T ss_pred CCcCCceEEEEC-CEEEEEEEccCC-CCCceEEEEEeCCCCCCCcEeccCC--CCCCCccCCceEEcCCCCEEEEeeCC-
Confidence 456789998766 888877655422 22334577777764 678865322 12233467889999999999998642
Q ss_pred ccCCceeEEEEecCCCCCCC-CCccCCCCC-----CCCCCCccEEccCCeEEEeeeccc-----CCCCcEEEEEECCCCc
Q 020796 103 EVQKWSGCMKRSYNKGVTWS-EREQLPPGI-----LGPSKNKPILLENGLLLCGSSVES-----WNSWGSWMEVTVDAGR 171 (321)
Q Consensus 103 ~~~~~~~~~~~S~D~G~TWs-~~~~l~~~~-----~g~~~~~~~~~~~G~~~~~~~~~~-----~~~~~~~~~~S~D~G~ 171 (321)
.+.+.+++..+.. ++..+.... ....+++.+...+|..++...... .....+.+++|+.=--
T Consensus 152 -------~i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~G 224 (269)
T cd08986 152 -------LIARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITG 224 (269)
T ss_pred -------ceEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCC
Confidence 1223233333332 222221110 011344445556777555422110 1133566777763111
Q ss_pred eeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEee
Q 020796 172 SWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 172 tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
-|+... +...+.-+.+++..++|+.++++..
T Consensus 225 Py~~~~-----~~~~g~Gh~~~v~~~~G~~~~~~h~ 255 (269)
T cd08986 225 PYGARY-----FAGRFLGHNTPFQDLDGRWWCTAFF 255 (269)
T ss_pred CccccC-----ccccccCCCceEECCCCCEEEEEEc
Confidence 122211 0011112335777788887776644
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >TIGR01322 scrB_fam sucrose-6-phosphate hydrolase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.65 Score=43.87 Aligned_cols=137 Identities=12% Similarity=0.134 Sum_probs=76.4
Q ss_pred EEEECCCCceeEEeeceecCCC---CcceeeeeEEEcCCCeEEEEEeecC----C--CCcEEEEEeccCCcCCCCCc-cC
Q 020796 163 MEVTVDAGRSWRKYGPIYIPNE---SLSVIQPVPFHTANRTLRVLMRSFN----G--IGRVCMSESCDGGLTWSYAK-PT 232 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~~~~~---~~~~~~~~~~~~~~G~l~~~~r~~~----~--~~~~~~~~S~D~G~tWs~~~-~~ 232 (321)
.+.|+ +..+|+....+..+.. ..|+.-++++. .+|++++++.... . .....+++|.|+ .+|++.. ++
T Consensus 59 ha~S~-Dlv~W~~~~~al~P~~~~d~~G~~sGsav~-~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg-~~~~k~~~pv 135 (445)
T TIGR01322 59 HYTSK-DLVHWEDEGVALAPDDPYDSHGCYSGSAVD-NNGQLTLMYTGNVRDSDWNRESYQCLATMDDD-GHFEKFGIVV 135 (445)
T ss_pred EEECC-CccccEECCccCcCCCcccCCceEECeEEe-eCCEEEEEEeccccCCCCCeeEEEEEEEcCCC-CeEEECCCce
Confidence 45565 5899998653322221 23555556554 5789999886531 1 123467889984 5898743 11
Q ss_pred CCCC-CC---C--c-eeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCCCCCCCcceeecccC-------CCceeceEEE
Q 020796 233 QLLN-PN---S--G-IDGVKLKDGRLLLAYNTV---SRGVLKVALSKDDGDSWHDALTLEENL-------AMEFSYPAVI 295 (321)
Q Consensus 233 ~~~~-~~---~--~-~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~G~tW~~~~~l~~~~-------~~~~~yp~~~ 295 (321)
++. +. . + +.+.. .+|+.+|++... ....+.++.| +|.++|+....+.... ....-.|.+.
T Consensus 136 -i~~~~~~~~~~fRDP~V~~-~~g~~~M~~g~~~~~~~g~i~ly~S-~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf 212 (445)
T TIGR01322 136 -IELPPAGYTAHFRDPKVWK-HNGHWYMVIGAQTETEKGSILLYRS-KDLKNWTFVGEILGDGQNGLDDRGYMWECPDLF 212 (445)
T ss_pred -EeCCCCCCcCcCCCCcEEe-ECCEEEEEEEEecCCCceEEEEEEC-CCcccCeEecccccccccccCCccceEECCeEE
Confidence 111 11 0 1 22333 468888876432 2345556666 4689998776543211 1234568888
Q ss_pred EccCCeEEEEE
Q 020796 296 QASDGSVHITY 306 (321)
Q Consensus 296 ~~~dg~l~v~y 306 (321)
.+++. -+++|
T Consensus 213 ~l~~k-~vL~~ 222 (445)
T TIGR01322 213 SLDGQ-DVLLF 222 (445)
T ss_pred EECCc-EEEEE
Confidence 87654 33444
|
|
| >COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.37 Score=45.64 Aligned_cols=72 Identities=21% Similarity=0.330 Sum_probs=49.4
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCC--Cc-EEEEEEeC-CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAP--DV-KIWLQTFK-DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~--~~-~i~~s~s~-~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.-+.+|.|. ..||+.|+.|..-...+.+ +. ..+++... +|+|++|..+... ..-+|.++.+.+|++||++..
T Consensus 89 ~giWAPdl~-y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsDpi~l~~~---~~iDPslf~D~dGr~wlv~~~ 164 (549)
T COG3507 89 GGIWAPDLS-YHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDPIKLNGS---NAIDPSLFFDKDGRKWLVNGS 164 (549)
T ss_pred Cceecccee-cCCCcEEEEEecccccCCcccccccEEEEecCCCCCcccceecCCc---CccCCceeecCCCCEEEEecc
Confidence 556789998 7789999988332222211 22 23344433 6899999987543 235699999999999999874
|
|
| >PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.22 Score=44.57 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=75.9
Q ss_pred CccEEccCCe--EEEeeecccCC-C-CcEEEEEECCCCceeEEee-ceecCC---CCcceeeeeEEEcCCCeEEEEEeec
Q 020796 137 NKPILLENGL--LLCGSSVESWN-S-WGSWMEVTVDAGRSWRKYG-PIYIPN---ESLSVIQPVPFHTANRTLRVLMRSF 208 (321)
Q Consensus 137 ~~~~~~~~G~--~~~~~~~~~~~-~-~~~~~~~S~D~G~tW~~~~-~~~~~~---~~~~~~~~~~~~~~~G~l~~~~r~~ 208 (321)
|+.++..+|. +++..+.+... . ..+.+..|.|+ .+|+... ++..+. +..|+-.|.++..+ ++.+|.+...
T Consensus 34 Npgai~~~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-i~f~~~~~pil~P~~~~e~~GvEDPRVt~i~-d~yymtYta~ 111 (312)
T PF04041_consen 34 NPGAIVFDGGLRVYLLYRAYGSDIGSSRIGLARSDDG-IHFERDPEPILYPDTDYEEWGVEDPRVTKID-DTYYMTYTAY 111 (312)
T ss_dssp EEEEEEETTE--EEEEEEEEESSSSEEEEEEEEESSS-SS-EE-SS-SBEE-SSTTHTEEEEEEEEEET-TEEEEEEEEE
T ss_pred cCcEEEECCeeEEEEEEEeECCCCceeEEEEEEccCC-cCceECCCCEEccCCCCcccCccceeEEEEC-CEEEEEEEEe
Confidence 3444445555 55443332211 2 25778899876 8898754 332222 23566668888775 6788877543
Q ss_pred C-CCCcEEEEEeccCCcCCCCCccCCCCCC-C---------CceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCc
Q 020796 209 N-GIGRVCMSESCDGGLTWSYAKPTQLLNP-N---------SGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHD 277 (321)
Q Consensus 209 ~-~~~~~~~~~S~D~G~tWs~~~~~~~~~~-~---------~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~ 277 (321)
. ....+.++.|+| ..+|........+.. . ...-.-..-+|+++|.++ ...+.++.| +|+..|..
T Consensus 112 ~~~~~~~~la~s~D-~~~~~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---~~~i~la~S-~Dl~~W~~ 186 (312)
T PF04041_consen 112 SGKGPRIGLATSKD-FKHWERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---DPSIWLAYS-PDLIHWGN 186 (312)
T ss_dssp ESSSEEEEEEEESS-SSSEEEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---SSSBEEEEE-SSSSSEEE
T ss_pred cCCCcccceEEccc-hHhhEEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---CCCEEEEec-CCcccccc
Confidence 2 234677888887 788976432211111 0 000011123689888887 456788888 56889987
Q ss_pred ce
Q 020796 278 AL 279 (321)
Q Consensus 278 ~~ 279 (321)
..
T Consensus 187 ~~ 188 (312)
T PF04041_consen 187 HR 188 (312)
T ss_dssp EB
T ss_pred cc
Confidence 54
|
On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B. |
| >cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.3 Score=38.67 Aligned_cols=196 Identities=15% Similarity=0.202 Sum_probs=99.4
Q ss_pred CcEEEEEEeCCC-CcCCcE-EccC-CC----CCCCCCeEEEEeCCCcEEEEEEecccc----CCceeEEEEecCCCCCCC
Q 020796 54 DVKIWLQTFKDG-RWQSPI-IADE-EP----NVPMWNPVLFKLPSNGLLLFYKIGQEV----QKWSGCMKRSYNKGVTWS 122 (321)
Q Consensus 54 ~~~i~~s~s~~G-tWs~~~-~~~~-~~----~~~~~~p~l~~~~~G~l~l~~~~~~~~----~~~~~~~~~S~D~G~TWs 122 (321)
...|.++.|+|| +|...- .+.. .+ ....+.|.++.. +|+.+|+|...... ......+.+|++.-.-|+
T Consensus 78 ~y~I~~A~S~Dgv~W~~~g~~L~~~~~g~Wd~~~vwaP~Vi~~-dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWt 156 (349)
T cd08992 78 KCEIWHATSKDGWTWKEEGPAIGRGEKGAYDDRSVFTPEVLEH-EGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWT 156 (349)
T ss_pred ceEEEEEECCCCCCceECCccccCCCCCCccccceECcEEEEE-CCEEEEEEEecccccCCCCcceEEEEEECCcccccc
Confidence 456889999999 997643 3332 11 135778988754 89999999742111 112345677765433476
Q ss_pred CCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEE
Q 020796 123 EREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLR 202 (321)
Q Consensus 123 ~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~ 202 (321)
.... ....+ ..+|.|.... ...+..+.++ .|... ....|.++.. +|+.+
T Consensus 157 r~d~---Pil~p-------~~dg~w~~d~--------~~~~~~~~~g--~wD~~----------~v~~P~v~~~-~g~yy 205 (349)
T cd08992 157 KSDE---PILSP-------SNDGIWKGDE--------DNRFLVKKKG--SFDSH----------KVHDPCLFPF-NGKFY 205 (349)
T ss_pred cCCC---cEecC-------CcCCceeecc--------CceeEeccCC--CcccC----------ceECCEEEEE-CCEEE
Confidence 4311 00000 0122222110 0112222211 23221 2234566655 68999
Q ss_pred EEEeecC---------CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCC
Q 020796 203 VLMRSFN---------GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGD 273 (321)
Q Consensus 203 ~~~r~~~---------~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~ 273 (321)
|++..+. ....+-+++|++----|+.....++-......++-...+|-..|+..+..... ++..|. ||.
T Consensus 206 L~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~nPi~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-dg~ 283 (349)
T cd08992 206 LYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKSPYNPITNSGHETCVWQYKGGIAAMLTTDGPEKN-TIQFAP-DGI 283 (349)
T ss_pred EEEEccccCcccccCCCCceEEEEEECCCCCCCEeCCCCcccCCCCceEEEecCCceEEEEeccCCCCc-eEEeCC-CCc
Confidence 9886542 12357888888766667653221121222223444445554356655542222 466666 588
Q ss_pred CCCcceeecc
Q 020796 274 SWHDALTLEE 283 (321)
Q Consensus 274 tW~~~~~l~~ 283 (321)
.|.-..++..
T Consensus 284 ~~~~~~~~~~ 293 (349)
T cd08992 284 NFEIMAHIKG 293 (349)
T ss_pred cEEEeeeccC
Confidence 8976555543
|
This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.4 Score=37.93 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=75.8
Q ss_pred ccccceEEEec---CCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCc--E-EccCC-CC----CCCCCeEEEEeCCC
Q 020796 26 SCHASTIVEVD---KGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSP--I-IADEE-PN----VPMWNPVLFKLPSN 92 (321)
Q Consensus 26 ~~~~p~l~~~~---~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~--~-~~~~~-~~----~~~~~p~l~~~~~G 92 (321)
...+|.|+... +|+.++.|..+ ...|.++++++ |.|+.+ . ++... ++ ....+|.++.+.||
T Consensus 77 ~~WAP~v~~~~~~~~gkyylyy~~~------~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG 150 (311)
T cd09003 77 NSWAPSIAVKKINGKGKFYLYFANG------GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDG 150 (311)
T ss_pred ccCCCceEEeccCCCCEEEEEEecC------CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCC
Confidence 45789998776 38888866432 12366666664 789875 2 22221 11 12358999999899
Q ss_pred cEEEEEEeccc----cCCceeEEEEecCCCCCCCC-CccCCCCCCCCCCCccEEccCCeEEEeeeccc-------CCCCc
Q 020796 93 GLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSE-REQLPPGILGPSKNKPILLENGLLLCGSSVES-------WNSWG 160 (321)
Q Consensus 93 ~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~-~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~-------~~~~~ 160 (321)
+.||+|..... ......++.+-+++..+... +..+... ...+++.+...+|..++...... .....
T Consensus 151 ~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D~~~~~g~~~~i~~~--~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~ 228 (311)
T cd09003 151 QGYLYFGGGVPGGRWANPNTARVIKLGDDMISVDGSAVTIDAP--YFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGR 228 (311)
T ss_pred CEEEEECCccCCCccccCCCEEEEEeCCCceeccCCceEccCC--CceEeeeEEEECCEEEEEEeCCCCccCCCCCCcee
Confidence 99999964211 01112445555555444432 2222221 12444455556787655432211 11234
Q ss_pred EEEEEECCCCceeEEe
Q 020796 161 SWMEVTVDAGRSWRKY 176 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~ 176 (321)
+.+++|+.----|+..
T Consensus 229 v~y~~s~~~~GP~~~~ 244 (311)
T cd09003 229 IAYMTSKNPMGPFTYK 244 (311)
T ss_pred EEEEEcCCCCCCcccC
Confidence 5566776432346543
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose |
| >cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.7 Score=36.70 Aligned_cols=210 Identities=10% Similarity=0.014 Sum_probs=105.0
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cC---C-----------CCCCCCCeEEEEe
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DE---E-----------PNVPMWNPVLFKL 89 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~---~-----------~~~~~~~p~l~~~ 89 (321)
..+.|+|+... |+.+++. .... ... .|.+.+|+|- +|+....+ .. . .....+.|.+...
T Consensus 10 ~~~DP~v~~~~-~~yY~~~-t~~~-~~~--gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~~~ 84 (269)
T cd09001 10 DYPDPDVIRVG-DDYYMVS-TTMH-YSP--GAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLRYH 84 (269)
T ss_pred CCCCCeEEEEC-CEEEEEE-CCcc-cCC--CCEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceEEE
Confidence 44789998776 6766643 3211 112 2566678886 99865322 11 0 1124677888655
Q ss_pred CCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCC
Q 020796 90 PSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDA 169 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~ 169 (321)
+|+-+|+|... .....+..|++----|+.+..+. ..+-..+++..||+.++... ...+.+..-+.+
T Consensus 85 -~gkyy~yys~~----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl~~~-----~~~i~~~~l~~d 150 (269)
T cd09001 85 -NGTFYVFFCTN----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYLVYG-----GGTIRLVELSPD 150 (269)
T ss_pred -CCEEEEEEEec----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEEEeC-----CCcEEEEEECcc
Confidence 89988888752 12345666665333476554332 11222344556788776521 123444443333
Q ss_pred CceeEEeeceecCCCC--cceee-eeEEEcCCCeEEEEEeecC-CCCcEEEEEeccCCcCCCCCccCCCC---CCCCc-e
Q 020796 170 GRSWRKYGPIYIPNES--LSVIQ-PVPFHTANRTLRVLMRSFN-GIGRVCMSESCDGGLTWSYAKPTQLL---NPNSG-I 241 (321)
Q Consensus 170 G~tW~~~~~~~~~~~~--~~~~~-~~~~~~~~G~l~~~~r~~~-~~~~~~~~~S~D~G~tWs~~~~~~~~---~~~~~-~ 241 (321)
..+............. ....| |.++. .+|..++++.... ....+.+++|++-=--|+....+..+ ....+ -
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~Egp~i~k-~~G~YYl~~S~~~~~~~~~~~~~s~~~~GP~~~~~~~~~~~~~~~~~gh~ 229 (269)
T cd09001 151 LTGVGGKDQVIIDAGEEIGLGAEGSHLYK-INGYYYIFNIAWGGGGRTQTCLRSKSLTGPYESKVVLEDGSTGGNGPHQG 229 (269)
T ss_pred cCCcCCCceEEEeCCCccccccccCeEEE-ECCEEEEEEecCCCCCceEEEEEeCCCCCCcCCcceecCCCCCCCCCCCE
Confidence 3333211111111110 12333 45554 5789888875542 22356677887643335442211100 00111 2
Q ss_pred eEEEcCCCcEEEEE
Q 020796 242 DGVKLKDGRLLLAY 255 (321)
Q Consensus 242 ~~~~~~~g~~~lv~ 255 (321)
.++..++|+.++++
T Consensus 230 ~~~~~~~G~~~~~~ 243 (269)
T cd09001 230 GIVDTPDGEWYFML 243 (269)
T ss_pred EEEECCCCCEEEEE
Confidence 35666788877775
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend |
| >cd08986 GH43_7 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.3 Score=36.23 Aligned_cols=218 Identities=11% Similarity=-0.035 Sum_probs=105.1
Q ss_pred cccceEEEecCCcEEEEEecCCCC-----C-CCCcEEEEEEeCCC-CcCCcEEc-cCC---------------CCCCCCC
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCE-----G-APDVKIWLQTFKDG-RWQSPIIA-DEE---------------PNVPMWN 83 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~-----g-~~~~~i~~s~s~~G-tWs~~~~~-~~~---------------~~~~~~~ 83 (321)
.|.|.|+...+|..+++....... + .....|.+.+|+|- +|+....+ ... .....+.
T Consensus 2 ~rDP~v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~WA 81 (269)
T cd08986 2 IRDTYVTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVWA 81 (269)
T ss_pred CcCCeEEecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCcCC
Confidence 367999988877766654332110 0 11124778888886 89875432 111 1234677
Q ss_pred eEEEEeCCCcEEEEEEeccccCC-ceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEE
Q 020796 84 PVLFKLPSNGLLLFYKIGQEVQK-WSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSW 162 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~~~~-~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 162 (321)
|.+... +|+.+|+|........ ....+..|++=---|+.+....+ ....+-...++..||+.++.... . ..
T Consensus 82 P~v~~~-~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~~~-~~~~iD~~~f~D~DG~~Yl~~~~----~--~i 153 (269)
T cd08986 82 PELHYI-KGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGNKP-LFPGIDPSLFEDDDGKVYLVWHN----T--LI 153 (269)
T ss_pred ceEEEE-CCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCCCC-CCCccCCceEEcCCCCEEEEeeC----C--ce
Confidence 888765 6999988875321111 12234444432234654432101 11112233445567887765211 1 11
Q ss_pred EEEECCCCceeEEee-ceecCC---CCcceee-eeEEEcCCCeEEEEEeec------CCCCcEEEEEeccCCcCCCCCcc
Q 020796 163 MEVTVDAGRSWRKYG-PIYIPN---ESLSVIQ-PVPFHTANRTLRVLMRSF------NGIGRVCMSESCDGGLTWSYAKP 231 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~-~~~~~~---~~~~~~~-~~~~~~~~G~l~~~~r~~------~~~~~~~~~~S~D~G~tWs~~~~ 231 (321)
...+.| ..+..... .+.... ......| |.+.. .+|..++++... .....+.+++|+.=---|+....
T Consensus 154 ~~l~~d-~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k-~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~~~ 231 (269)
T cd08986 154 ARLKDD-LSGLAGDPVRIDPSPTFYKDEIGHEGAFVFK-YGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGARYF 231 (269)
T ss_pred EeccCc-cccccCCcEEEecccccccCCccccccEEEE-ECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccccCc
Confidence 222333 22322111 111110 0001233 45554 578988887442 11235677777643333433211
Q ss_pred CCCCCCCCceeEEEcCCCcEEEEEe
Q 020796 232 TQLLNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 232 ~~~~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
...++. ...++...+|+.++++.
T Consensus 232 -~~~g~G-h~~~v~~~~G~~~~~~h 254 (269)
T cd08986 232 -AGRFLG-HNTPFQDLDGRWWCTAF 254 (269)
T ss_pred -cccccC-CCceEECCCCCEEEEEE
Confidence 122222 12456778899998875
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=94.36 E-value=3.3 Score=36.22 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=85.9
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccc
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQE 103 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~ 103 (321)
...+|.|... +|+.++.|..... .....|.+.++++ |-|+.+.... ....+|.++.+.+|+.||+|...
T Consensus 67 ~~WAP~v~~~-~G~yy~yy~~~~~--~~~~~i~va~sd~~~Gpw~~~~~~~----~~~IDp~~f~D~dG~~Yl~~~~~-- 137 (269)
T cd08989 67 GIWAPCLSYY-DGKFWLIYTAVKV--WKDCHNYLFTAEDITGPWSRPIFLN----YGGFDPSLFHDDDGKKYLINMGW-- 137 (269)
T ss_pred cEEcceEEEE-CCEEEEEEecccc--CCCceEEEEEECCCCCCCcCCEECC----CCcccCceEEcCCCCEEEEecCC--
Confidence 4578999876 5888876654322 1223466666654 6898876442 13467989998999999998531
Q ss_pred cCCceeEEEE-ecCCCCCCCCCc--cCCCC-CCCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCceeEEee-
Q 020796 104 VQKWSGCMKR-SYNKGVTWSERE--QLPPG-ILGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSWRKYG- 177 (321)
Q Consensus 104 ~~~~~~~~~~-S~D~G~TWs~~~--~l~~~-~~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~- 177 (321)
....+.. +.|.+.-=+++. .+..+ .....+++.+...+|.-++...... .......+.+|+.==--|+...
T Consensus 138 ---~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~ 214 (269)
T cd08989 138 ---SGIRLQEYSPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPD 214 (269)
T ss_pred ---CcEEEEEEChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCC
Confidence 1223333 233222112221 11111 0112344445555777555432211 1223456777773212365432
Q ss_pred -ceecC---C-CCcceeeeeEEEcCCCeEEEEEee
Q 020796 178 -PIYIP---N-ESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 178 -~~~~~---~-~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
++... + ...+.-+.++++.++|+.++++..
T Consensus 215 ~pl~~~~~~~~~~~g~GH~s~v~~~~G~~~~~~h~ 249 (269)
T cd08989 215 NPLVLWDTPGNPLQKCGHASLVETPDGKWYLAHLT 249 (269)
T ss_pred CcceeecCCCCCcccCCCcCeEECcCCCEEEEEEe
Confidence 21110 1 112333456677777886666543
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended |
| >PF13810 DUF4185: Domain of unknown function (DUF4185) | Back alignment and domain information |
|---|
Probab=94.34 E-value=3.7 Score=36.83 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=65.6
Q ss_pred cEEEEEECCCCceeEEeeceecCCC--Ccc------eeeeeEEEcCCCeEEEEEeecCCCCcEEEEEecc----------
Q 020796 160 GSWMEVTVDAGRSWRKYGPIYIPNE--SLS------VIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCD---------- 221 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~~~~~~~~--~~~------~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D---------- 221 (321)
...+.+|+|+|+||+......-.+. ..+ ..+.......+|-++++.....-.+.+++++-.-
T Consensus 128 ~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~gt~~~R~g~~~LaRV~~~~i~d~~aye 207 (316)
T PF13810_consen 128 YSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYGTPFGRNGGVYLARVPPDDILDRSAYE 207 (316)
T ss_pred ceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEeCCCCCCCcEEEEEeCHHHCCChhhcc
Confidence 5779999999999998752211111 011 1122223346777888764322123444444211
Q ss_pred --CCcC--CCCCccC--C-CCCCCCceeEEEc-CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 222 --GGLT--WSYAKPT--Q-LLNPNSGIDGVKL-KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 222 --~G~t--Ws~~~~~--~-~~~~~~~~~~~~~-~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
.|.. |....+- . ++.+.+.+++... ..|+.+|++.+..+..+.+..+.+=---|+.+..+..
T Consensus 208 yw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~~~~~I~~RtA~~P~GpWs~~~~l~~ 277 (316)
T PF13810_consen 208 YWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDAGTGGIVLRTAPSPTGPWSEPKPLVT 277 (316)
T ss_pred ccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecccCCcEEEEecCCCCCCCCCCeeEEe
Confidence 1233 7543221 1 2333344555543 3689999987655556666665432335987776554
|
|
| >cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase | Back alignment and domain information |
|---|
Probab=93.62 E-value=3.8 Score=37.28 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=53.3
Q ss_pred EEecCCCCCCCccccceEEEecCCcEEEEEecCCCC----CCCCcEEEEEEeCCC-----CcCCcEEc-cCC--------
Q 020796 15 FTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCE----GAPDVKIWLQTFKDG-----RWQSPIIA-DEE-------- 76 (321)
Q Consensus 15 ~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~----g~~~~~i~~s~s~~G-----tWs~~~~~-~~~-------- 76 (321)
.||+++..+-..+..++.+...+|++++.|.+.... ....+.|..+++++. .|.....+ .++
T Consensus 59 ~l~p~~~~d~~g~wSGsa~~~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~ 138 (349)
T cd08997 59 KVFPDGLSPGSREWSGSATLDDDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQ 138 (349)
T ss_pred ccCCCCcccCCCeEcceEEEeCCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEecc
Confidence 477766545556667787777779999988765321 123345666666653 34332222 111
Q ss_pred ---------CCCCCCCeEEEEeC-CCcEEEEEEe
Q 020796 77 ---------PNVPMWNPVLFKLP-SNGLLLFYKI 100 (321)
Q Consensus 77 ---------~~~~~~~p~l~~~~-~G~l~l~~~~ 100 (321)
.....++|.++.++ +|..||++..
T Consensus 139 q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfea 172 (349)
T cd08997 139 QYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEG 172 (349)
T ss_pred ccccccccCccCcccCCEEEecCCCCcEEEEEEe
Confidence 12357789999887 7889988875
|
Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n |
| >cd08981 GH43_2 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=93.15 E-value=5.8 Score=35.12 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=109.8
Q ss_pred CCCeEEEEeC-CCcEEEEEEecccc---CCceeEEEEecCCCCCCCCCccCCC-CC--C--CCCCCccEEccCCeEEEee
Q 020796 81 MWNPVLFKLP-SNGLLLFYKIGQEV---QKWSGCMKRSYNKGVTWSEREQLPP-GI--L--GPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 81 ~~~p~l~~~~-~G~l~l~~~~~~~~---~~~~~~~~~S~D~G~TWs~~~~l~~-~~--~--g~~~~~~~~~~~G~~~~~~ 151 (321)
..+|.++..+ +|+-+++.+..... ......+.+|+| -.+|+....+.+ .. . .....+-+...+|+.++..
T Consensus 6 ~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~D-Lv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~G~yyly~ 84 (291)
T cd08981 6 IRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKD-LKDWEGPYPVFRPPDDFWADDNFWAPEVHEYKGRYYMFA 84 (291)
T ss_pred ccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCC-hhcccccceeeccCCCcCccccccCCeeeeeCCEEEEEE
Confidence 4678887764 67777765532111 001234667776 578987655332 11 0 1111222344588876643
Q ss_pred ecccCC--CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeec---CCCCcEEEEEeccCCcCC
Q 020796 152 SVESWN--SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSF---NGIGRVCMSESCDGGLTW 226 (321)
Q Consensus 152 ~~~~~~--~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~---~~~~~~~~~~S~D~G~tW 226 (321)
...... ...+.++.|++=---|+......+.+.....+.|.++..+||+.++++... ...+.+++++=.+.+.+-
T Consensus 85 s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~~~~~~~~i~~~eL~~d~~~~ 164 (291)
T cd08981 85 TFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEWVQVYDGTIEAVRLSPDLSRA 164 (291)
T ss_pred EeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEecccccCCCCEEEEEeCCCcccc
Confidence 222111 123556666642224665421111222234677888888899998876421 112445554433333322
Q ss_pred C-CCccC-CC---C-------------C-CCCceeEEEcCCCcEEEEEeC--CCCCeEEEEEEcC---CCCCCCcce-ee
Q 020796 227 S-YAKPT-QL---L-------------N-PNSGIDGVKLKDGRLLLAYNT--VSRGVLKVALSKD---DGDSWHDAL-TL 281 (321)
Q Consensus 227 s-~~~~~-~~---~-------------~-~~~~~~~~~~~~g~~~lv~~~--~~r~~l~~~~S~D---~G~tW~~~~-~l 281 (321)
. ++..+ .. + . ...+..+...++|+.+|+|.. .....+.+++|.. -| -|.+.. .+
T Consensus 165 ~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~~~~Y~~~~~rs~s~~~~G-Py~~~~~pi 243 (291)
T cd08981 165 IGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFSDGGYAQGVARSESGTLLG-PWVQEPEPL 243 (291)
T ss_pred CCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecCCCCEEEEEEEcCCCCccC-CcEECCCcc
Confidence 1 11110 00 0 0 001223344457898888742 2344566777763 12 265432 22
Q ss_pred cccCCCceeceEEEEccCCeEEEEEEe
Q 020796 282 EENLAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 282 ~~~~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
-.. +.++..+++..+|..|++|-.
T Consensus 244 ~~~---~~GH~s~v~~~~G~~~~vyH~ 267 (291)
T cd08981 244 ISD---DGGHGMLFRTFDGRLMLSLHT 267 (291)
T ss_pred cCC---CCCCCeeEEcCCCCEEEEEEC
Confidence 211 235677888889988888754
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.96 E-value=8.6 Score=36.56 Aligned_cols=214 Identities=18% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCcEEEEEEeccccCCcee---EEEEecCCCCCCCCCc-cCCCC----CCCCCCCccEEccCCeEEEe-eeccc-CCC--
Q 020796 91 SNGLLLFYKIGQEVQKWSG---CMKRSYNKGVTWSERE-QLPPG----ILGPSKNKPILLENGLLLCG-SSVES-WNS-- 158 (321)
Q Consensus 91 ~G~l~l~~~~~~~~~~~~~---~~~~S~D~G~TWs~~~-~l~~~----~~g~~~~~~~~~~~G~~~~~-~~~~~-~~~-- 158 (321)
+|+-++||+-.+....+.. .-..|+ +=.+|+... .|.|+ ..|+..+++++. +|++.+. ..... .+.
T Consensus 51 ~G~yHlFYQ~~P~~~~~g~~~WgHa~S~-Dlv~W~~~piaL~Pd~~~d~~g~ySGSAV~~-~~~l~lfytg~v~~~~~~r 128 (486)
T COG1621 51 DGKYHLFYQYNPFGAAHGPKHWGHAVSK-DLVHWEHLPIALAPDDDYDSHGCYSGSAVVD-DGNLSLFYTGNVRDSNGIR 128 (486)
T ss_pred CCEEEEEEecCCCCCCCCCceeeeeccC-CcccceECCceecCCCccccCCceeeeEEEe-CCcEEEEEccceeccCCcc
Confidence 7899999985332111111 134664 468897544 34442 345556666654 5554332 11111 111
Q ss_pred -CcEEEEEECCCCceeEE-eeceecCCC--CcceeeeeEEEcCCCeEEEEE--eecCCCCcEEEEEeccCCcCCCCCccC
Q 020796 159 -WGSWMEVTVDAGRSWRK-YGPIYIPNE--SLSVIQPVPFHTANRTLRVLM--RSFNGIGRVCMSESCDGGLTWSYAKPT 232 (321)
Q Consensus 159 -~~~~~~~S~D~G~tW~~-~~~~~~~~~--~~~~~~~~~~~~~~G~l~~~~--r~~~~~~~~~~~~S~D~G~tWs~~~~~ 232 (321)
..-.+++|+|+|...+. ..++...+. ...+..|.++...+|+..++. ......+.+.+..|.| .+.|+..-.+
T Consensus 129 ~~~Q~iA~s~dg~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~~~~g~i~lY~S~D-L~~W~~~g~~ 207 (486)
T COG1621 129 QQTQCIAYSEDGGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGEDLKGTILLYESDD-LKNWQFTGEF 207 (486)
T ss_pred eeEEEEEEEcCCCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecCCCCceEEEEeCCC-ccCcEEEEee
Confidence 13468899996665553 233322121 123456776666667654443 3333345677777766 9999976544
Q ss_pred CCCCCCCc-----eeEEEcCCCcEEEEEeCC---------CCCeEEEEEEcCCCCCCCcce----eecccCCCceeceEE
Q 020796 233 QLLNPNSG-----IDGVKLKDGRLLLAYNTV---------SRGVLKVALSKDDGDSWHDAL----TLEENLAMEFSYPAV 294 (321)
Q Consensus 233 ~~~~~~~~-----~~~~~~~~g~~~lv~~~~---------~r~~l~~~~S~D~G~tW~~~~----~l~~~~~~~~~yp~~ 294 (321)
.......+ +.+..++.....+.+-.. ......+.+-.=||+++.... .|+- +.++--|..
T Consensus 208 ~~~~~~~gym~ECPdlf~l~~~~~~~~~pqg~~~~~~~~~n~~~~~Y~vG~~dg~~f~~~~~~~~~LD~--G~DfYApQt 285 (486)
T COG1621 208 GLEQGGLGYMWECPDLFELDGEDVLLFWPQGLSINGGEYDNIYQSGYFVGDFDGKEFKLDDGQFRELDF--GFDFYAPQT 285 (486)
T ss_pred ccCCCceeeEEECCCeEEecCcCceEEcceeeecCCCcCCCcceeEEEEEeeccceeEecCCCceeccc--Cccccceee
Confidence 33211111 223444433333333211 122333444333566654332 2332 345544555
Q ss_pred EEccCCe-EEEEEEeC
Q 020796 295 IQASDGS-VHITYTYN 309 (321)
Q Consensus 295 ~~~~dg~-l~v~y~~~ 309 (321)
...+||+ |++.|..+
T Consensus 286 f~~~dgrri~igWmg~ 301 (486)
T COG1621 286 FLDPDGRRILIGWMGN 301 (486)
T ss_pred ccCCCCCEEEEEeccC
Confidence 5554664 77888653
|
|
| >cd08982 GH43_3 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.8 Score=34.80 Aligned_cols=204 Identities=14% Similarity=0.056 Sum_probs=103.7
Q ss_pred CCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcE
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGS 161 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 161 (321)
.+|.++.. +|+.|++-+. .. .+.+|+| =..|+....+.. ..+...+ -+...+|++++.+... ..
T Consensus 4 ~DP~i~~~-~g~YY~~~T~---~~----~i~~S~D-L~~W~~~g~~~~-~~~~WAP-~i~~~~g~~Y~~~~~~-----~~ 67 (295)
T cd08982 4 ADPVVILF-KGEYYLFASM---SG----GYWHSSD-LIDWDFIPTNSL-PDEGYAP-AVFVYDGTLYYTASTY-----NS 67 (295)
T ss_pred CCCeEEEE-CCEEEEEEeC---CC----CeEECCC-cCCceECCcccC-CCCcCcC-EEEEECCEEEEEEeCC-----Cc
Confidence 46877765 6777765432 11 2678887 578987765322 1122332 3444588877654321 24
Q ss_pred EEEEECCC-CceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEE-EeccCCc---------------
Q 020796 162 WMEVTVDA-GRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMS-ESCDGGL--------------- 224 (321)
Q Consensus 162 ~~~~S~D~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~-~S~D~G~--------------- 224 (321)
.++.|+|- |--|+...+ ......+.+.++..+||+.++++.... ...++++ .+.|.++
T Consensus 68 ~v~~s~~p~gp~w~~~~~----~~~~~~IDp~vf~DdDGk~Yl~~g~~~-~~~i~~~eL~~d~~~~~g~~~~l~~~~~~~ 142 (295)
T cd08982 68 RIYKTADPLSGPWEEVDK----SFPPGLADPALFIDDDGRLYLYYGCSN-NYPLRGVEVDPDTFRPIGEPVELIPGNPDK 142 (295)
T ss_pred eEEEeCCCCCCCcccccc----ccCCCccCCceEECCCCCEEEEEecCC-CCCeEEEEECcccCCccCcceEEEeCCCCC
Confidence 56777763 445776421 112245678888888899999875322 1224332 2333321
Q ss_pred -CCCCCccCC----CCCCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCcce---eecccCC--Ccee
Q 020796 225 -TWSYAKPTQ----LLNPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDAL---TLEENLA--MEFS 290 (321)
Q Consensus 225 -tWs~~~~~~----~~~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~---~l~~~~~--~~~~ 290 (321)
.|...-... ......+..+.. .+|+.+|.|... ....+.+++|++=-.-|.... ++.+... .+.+
T Consensus 143 ~~We~~g~~~~~~~~~~~~EGP~i~k-~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~GP~~~~~~~pil~~~~~~~~g~G 221 (295)
T cd08982 143 HGWERFGENNDNPDKTPWMEGAWMTK-HNGKYYLQYAAPGTEFNTYADGVYVSDSPLGPFTYQPHNPFSYKPGGFITGAG 221 (295)
T ss_pred cCeEecCcccccccCCccccccEEEE-ECCEEEEEEeCCCcccCcEeEEEEEeCCCCCCCCcCCCCccccCCCCeEecCC
Confidence 122110000 000011233343 689999998532 223466777763222243221 2222111 1245
Q ss_pred ceEEEEccCCeEEEEEE
Q 020796 291 YPAVIQASDGSVHITYT 307 (321)
Q Consensus 291 yp~~~~~~dg~l~v~y~ 307 (321)
+..++...+|..|++|.
T Consensus 222 H~s~v~~~~G~~~~~yh 238 (295)
T cd08982 222 HGSTFQDKYGNYWHVGT 238 (295)
T ss_pred cccEEECCCCCEEEEEE
Confidence 66788878888887763
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=92.51 E-value=6.4 Score=33.93 Aligned_cols=163 Identities=11% Similarity=0.083 Sum_probs=66.9
Q ss_pred cCCeEEEeeec---ccCCCCcEEEEEECCCCceeEEeece---ecCCCCcceeeeeEEEcCCCeEEEEEeecC-CCCcEE
Q 020796 143 ENGLLLCGSSV---ESWNSWGSWMEVTVDAGRSWRKYGPI---YIPNESLSVIQPVPFHTANRTLRVLMRSFN-GIGRVC 215 (321)
Q Consensus 143 ~~G~~~~~~~~---~~~~~~~~~~~~S~D~G~tW~~~~~~---~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~-~~~~~~ 215 (321)
-++-|+.|... .+.+..++...+|-|+|+||+.+.=+ ..+....+..-.++-... .||+++...+. ....+.
T Consensus 24 y~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~-NRLfa~iEtR~~a~~km~ 102 (367)
T PF12217_consen 24 YDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVG-NRLFAVIETRTVASNKMV 102 (367)
T ss_dssp ETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEET-TEEEEEEEEEETTT--EE
T ss_pred ecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeec-ceeeEEEeehhhhhhhhh
Confidence 47777766432 22344578889999999999987621 112222232223443334 48888875442 112222
Q ss_pred EEEeccC----CcCCCCCccCCCCCC-CCc------eeEEEcCCCcEEEEEeCC--CCCeEEEEEEcC---CCCCCCcce
Q 020796 216 MSESCDG----GLTWSYAKPTQLLNP-NSG------IDGVKLKDGRLLLAYNTV--SRGVLKVALSKD---DGDSWHDAL 279 (321)
Q Consensus 216 ~~~S~D~----G~tWs~~~~~~~~~~-~~~------~~~~~~~~g~~~lv~~~~--~r~~l~~~~S~D---~G~tW~~~~ 279 (321)
.+.--|. -..|.......++.. .+. .......+....+=|... .-..+.+.+..| .+..+....
T Consensus 103 ~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~ 182 (367)
T PF12217_consen 103 RAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRI 182 (367)
T ss_dssp EEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE
T ss_pred hhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeee
Confidence 1111111 122322111112220 111 123444566665555432 223455555443 233333332
Q ss_pred eecccCCCceeceEEEEccCCeEEEEEEe
Q 020796 280 TLEENLAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 280 ~l~~~~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
+ .+.....++-|.+-.. +|.|++.-+.
T Consensus 183 i-~sey~~~AsEPCvkyY-~g~LyLtTRg 209 (367)
T PF12217_consen 183 I-PSEYERNASEPCVKYY-DGVLYLTTRG 209 (367)
T ss_dssp ---GGG-TTEEEEEEEEE-TTEEEEEEEE
T ss_pred c-hhhhccccccchhhhh-CCEEEEEEcC
Confidence 2 2223345778888774 6788777544
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=92.02 E-value=11 Score=35.41 Aligned_cols=38 Identities=16% Similarity=0.393 Sum_probs=26.1
Q ss_pred EEccCCeEEEeee-------cccCCCCcEEEEEECCCCceeEEee
Q 020796 140 ILLENGLLLCGSS-------VESWNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 140 ~~~~~G~~~~~~~-------~~~~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
++..||++++.-. .+-..+-+..+.+|.|+|+++++..
T Consensus 178 iv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~v 222 (668)
T COG4946 178 IVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFV 222 (668)
T ss_pred EEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeee
Confidence 4667888776421 1111345778999999999999874
|
|
| >cd08980 GH43_1 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=91.80 E-value=8.6 Score=33.84 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=108.2
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccC---CCCC----CCCCCCccEEccCCeEEEeeeccc
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQL---PPGI----LGPSKNKPILLENGLLLCGSSVES 155 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l---~~~~----~g~~~~~~~~~~~G~~~~~~~~~~ 155 (321)
+|.++... ++-+++.+... ....+.+|+| =.+|+..... .+.. .+....+-+...+|+.++......
T Consensus 2 DP~v~~~~-d~yY~~~T~~~----~~~~i~~S~d-l~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~~~g~yylyys~~~ 75 (288)
T cd08980 2 DPWVIRHD-GYYYFTATTGE----DRIELRRSDT-LAGLATAESKVVWTPPDSGPYSGNLWAPELHYIDGKWYIYFAAGD 75 (288)
T ss_pred CCeEEEEC-CEEEEEEEeCC----CcEEEEecCC-hhHhhcCCcEEEecCCCCCCccccEECceEEEECCEEEEEEEccC
Confidence 57787764 46666655321 2345777776 4677654321 1110 011112223445788765432221
Q ss_pred C---CCCcEEEEEECC---CCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC----CCCcEEEEEeccCCcC
Q 020796 156 W---NSWGSWMEVTVD---AGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN----GIGRVCMSESCDGGLT 225 (321)
Q Consensus 156 ~---~~~~~~~~~S~D---~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~----~~~~~~~~~S~D~G~t 225 (321)
. ....+.++.|++ ---.|+....+.... ....+.|.++.. +|+.++++.... ....+++++..+. .+
T Consensus 76 ~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~-~~~~iDp~~~~d-dG~~Yl~~~~~~~~~~~~~~i~~~~l~~~-~~ 152 (288)
T cd08980 76 GGGNANHRMYVLENAGADPPTGPWTFKGRLADPT-DRWAIDGTVFEH-NGQLYFVWSGWEGRTNGNQNLYIAKMSNP-WT 152 (288)
T ss_pred CCCCcceeEEEEEeCCCCCCCCCceEeeEeccCC-CCeeeeeEEEEE-CCEEEEEEEccCCCCCCCccEEEEECCCC-Cc
Confidence 1 123456666664 234699875443222 224567788776 599888774321 1235666665543 34
Q ss_pred CCC-CccCCCCC---------CCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCC-C----CCCCcce--eeccc
Q 020796 226 WSY-AKPTQLLN---------PNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDD-G----DSWHDAL--TLEEN 284 (321)
Q Consensus 226 Ws~-~~~~~~~~---------~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~-G----~tW~~~~--~l~~~ 284 (321)
+.. +..+..+. ...+..+++ .+|.++|.|... ....+.++++... + .+|.+.. ++...
T Consensus 153 ~~g~~~~i~~p~~~we~~~~~~~EgP~~~k-~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~~~pil~~~ 231 (288)
T cd08980 153 LTGPRVLISRPEYDWERQGPGVNEGPAALK-RNGKVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKSPTPVFQSS 231 (288)
T ss_pred cCCcceEecCCCCCceecCceeeECcEEEE-ECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCCCCCceecC
Confidence 431 11111110 011233444 359999988532 2335566666421 1 2475421 22221
Q ss_pred ---CCCceeceEEEEccCCe-EEEEEEe
Q 020796 285 ---LAMEFSYPAVIQASDGS-VHITYTY 308 (321)
Q Consensus 285 ---~~~~~~yp~~~~~~dg~-l~v~y~~ 308 (321)
...+.++..++...+|. .+++|..
T Consensus 232 ~~~~~~g~GH~~iv~~~~G~~~~~~yH~ 259 (288)
T cd08980 232 PENGVYGPGHNSFTKSPDGTEDWIVYHA 259 (288)
T ss_pred CCCccCcCCccceEECCCCCEEEEEEcc
Confidence 11245788888878887 8888854
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=91.27 E-value=9.8 Score=33.46 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=108.8
Q ss_pred CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCC-CCCCCccEEcc
Q 020796 65 GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGIL-GPSKNKPILLE 143 (321)
Q Consensus 65 GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~-g~~~~~~~~~~ 143 (321)
||...|.+-. ...+|.++.. +|+-+++.+. .. ......+.+|+| -.+|+....+.+... +...+ -+.-.
T Consensus 4 ~~~~nPv~~~-----~~~DP~i~~~-~~~yY~~~t~-~~-~~~gi~i~~S~D-L~~W~~~g~~~~~~~~~~WAP-~i~~~ 73 (280)
T cd09002 4 GTYRNPILAG-----DYPDPSILRD-GEDYYMTHSS-FK-YTPGLVIWHSRD-LVNWTPVGPALPEYEGDVWAP-DLCKY 73 (280)
T ss_pred ccEeCCccCC-----CCCCCEEEEE-CCEEEEEEcc-hh-cCCCEEEEECCC-cCCceEccccccCCCCCEEcC-eeEEE
Confidence 4566665321 2347888765 5666664431 11 111234566665 678987654332211 22222 23446
Q ss_pred CCeEEEeeecccC-CCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccC
Q 020796 144 NGLLLCGSSVESW-NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDG 222 (321)
Q Consensus 144 ~G~~~~~~~~~~~-~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~ 222 (321)
+|+.++....... ....+.++.|++---.|+.+. ... ..+++.|.++...||+.++++... . .+..+.|+
T Consensus 74 ~gkyy~yys~~~~~~~~~~~va~ad~p~Gpw~~~~--~~~--~~~~IDp~vf~DddG~~Yl~~~~~----~-~~~l~~d~ 144 (280)
T cd09002 74 DGRYYIYFPAIPEGGNWTNMVIWADSPEGPWSKPI--DLK--IGGCIDPGHVVDEDGNRYLFLSGG----D-RVRLTADG 144 (280)
T ss_pred CCEEEEEEEeecCCCCceEEEEEECCCCCCCcCCE--ecC--CCCccCCceEEcCCCCEEEEECCe----e-EEEECccc
Confidence 8886554332211 123466777765444587542 111 123577888888899999987321 1 11223332
Q ss_pred CcCCCCCccCCC----------CC-CCCceeEEEcCCCcEEEEEeCC--C----CCeEEEEEEcCCCCCCCcce---eec
Q 020796 223 GLTWSYAKPTQL----------LN-PNSGIDGVKLKDGRLLLAYNTV--S----RGVLKVALSKDDGDSWHDAL---TLE 282 (321)
Q Consensus 223 G~tWs~~~~~~~----------~~-~~~~~~~~~~~~g~~~lv~~~~--~----r~~l~~~~S~D~G~tW~~~~---~l~ 282 (321)
...-.++..+.. .. ...+..+.. .+|..+|.+... . ...+.++.|++=--.|.... ++.
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~~~~~~Egp~~~k-~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~ 223 (280)
T cd09002 145 LSTDGKLEHVYDGWRYPEDWVVEGFALEGPKLKK-RNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVR 223 (280)
T ss_pred cEecCcCEEEecCcccccccccCCcccccceEEE-ECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEe
Confidence 111111111000 00 112233444 578888888532 1 12345566653212476532 232
Q ss_pred ccCC----CceeceEEEEccCCeEEEEEEe
Q 020796 283 ENLA----MEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 283 ~~~~----~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
.... .+.++..++..++|.-+++|-.
T Consensus 224 ~~~~~~~~~g~GH~~i~~~~~g~~~~vyH~ 253 (280)
T cd09002 224 TQSPQEPWWSKGHATLVDGPDGQWWMVYHA 253 (280)
T ss_pred cCCCCCCceeCCCCcEEECCCCCEEEEEEe
Confidence 2111 1346778888778887878753
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs |
| >cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=90.26 E-value=12 Score=32.86 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=67.2
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccC
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQ 105 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~ 105 (321)
...|+|+... ++.+++. .... ....|.+.+|+|- +|+....+.+......+.|.+.. .+|+-+|+|......+
T Consensus 15 ~~DP~i~~~~-~~yY~~~-t~~~---~~~gi~i~~S~DL~~W~~~g~~~~~~~~~~WAP~i~~-~~gkyy~yys~~~~~~ 88 (280)
T cd09002 15 YPDPSILRDG-EDYYMTH-SSFK---YTPGLVIWHSRDLVNWTPVGPALPEYEGDVWAPDLCK-YDGRYYIYFPAIPEGG 88 (280)
T ss_pred CCCCEEEEEC-CEEEEEE-cchh---cCCCEEEEECCCcCCceEccccccCCCCCEEcCeeEE-ECCEEEEEEEeecCCC
Confidence 4579998765 5666542 2111 1123677888886 99976543332233567788765 5899998888632222
Q ss_pred CceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEe
Q 020796 106 KWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 106 ~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~ 150 (321)
.....+..|++---.|+.+..+.. .+.+-..+++..||+.++.
T Consensus 89 ~~~~~va~ad~p~Gpw~~~~~~~~--~~~IDp~vf~DddG~~Yl~ 131 (280)
T cd09002 89 NWTNMVIWADSPEGPWSKPIDLKI--GGCIDPGHVVDEDGNRYLF 131 (280)
T ss_pred CceEEEEEECCCCCCCcCCEecCC--CCccCCceEEcCCCCEEEE
Confidence 334456677655456887653321 1113233445567887764
|
This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs |
| >cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase | Back alignment and domain information |
|---|
Probab=89.04 E-value=15 Score=32.09 Aligned_cols=216 Identities=14% Similarity=0.096 Sum_probs=105.1
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cC--------C-CCCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DE--------E-PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~--------~-~~~~~~~p~l~~~~~G~l 94 (321)
..+.|+|+... ++.+++... .+..+ .+.+.+|+|- +|+....+ .. . .....+.|.+... +|+-
T Consensus 7 ~~~DP~ii~~~-~~yY~~~t~--~~~~~--g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~G~y 80 (269)
T cd08989 7 DNPDPSIIRAG-DDYYMASST--FEWFP--GVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLSYY-DGKF 80 (269)
T ss_pred CCCCCcEEEEC-CeEEEEECc--cccCC--CcEEEECCccCCCEEccccccCccccccccCCCCCcEEcceEEEE-CCEE
Confidence 45679999875 667765422 11112 2567788886 99864322 11 0 1234678988664 8999
Q ss_pred EEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEE-ECCCCcee
Q 020796 95 LLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEV-TVDAGRSW 173 (321)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-S~D~G~tW 173 (321)
+|+|..........+.+..|++----|+.+..+.. ..+-+..++..||+.++.... + ..+.+.. +.|.+.-=
T Consensus 81 y~yy~~~~~~~~~~i~va~sd~~~Gpw~~~~~~~~---~~IDp~~f~D~dG~~Yl~~~~--~--~~i~l~~l~~~~~~~~ 153 (269)
T cd08989 81 WLIYTAVKVWKDCHNYLFTAEDITGPWSRPIFLNY---GGFDPSLFHDDDGKKYLINMG--W--SGIRLQEYSPAEKKLI 153 (269)
T ss_pred EEEEeccccCCCceEEEEEECCCCCCCcCCEECCC---CcccCceEEcCCCCEEEEecC--C--CcEEEEEEChhhCCCC
Confidence 99887532212223456666553334876543321 112233445568988765211 1 1233332 22222110
Q ss_pred EEee-ceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCcc--CCC--------CCCCC
Q 020796 174 RKYG-PIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAKP--TQL--------LNPNS 239 (321)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~~--~~~--------~~~~~ 239 (321)
..+. .....+......| |.+.. .+|..++++.... ....+.+++|++-=--|+.... +-+ .++.
T Consensus 154 ~~~~~~~~~~~~~~~~~Egp~~~k-~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~~pl~~~~~~~~~~~g~G- 231 (269)
T cd08989 154 GKPLNKVIIKGTDDGLTEGPHLYK-INGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPDNPLVLWDTPGNPLQKCG- 231 (269)
T ss_pred CCceeEEEecCCCCCccccceEEE-ECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCCCcceeecCCCCCcccCC-
Confidence 0000 0001111112233 44554 5788888775422 1224666777643334665321 100 0111
Q ss_pred ceeEEEcCCCcEEEEEe
Q 020796 240 GIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 240 ~~~~~~~~~g~~~lv~~ 256 (321)
...++..++|+.++++.
T Consensus 232 H~s~v~~~~G~~~~~~h 248 (269)
T cd08989 232 HASLVETPDGKWYLAHL 248 (269)
T ss_pred CcCeEECcCCCEEEEEE
Confidence 12345666788777764
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended |
| >PF13810 DUF4185: Domain of unknown function (DUF4185) | Back alignment and domain information |
|---|
Probab=87.77 E-value=20 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCCcEEEEEEeccc----cCCce---eEEEEecCCCCCCCCCc
Q 020796 90 PSNGLLLFYKIGQE----VQKWS---GCMKRSYNKGVTWSERE 125 (321)
Q Consensus 90 ~~G~l~l~~~~~~~----~~~~~---~~~~~S~D~G~TWs~~~ 125 (321)
-+|++||.|..... .+.|. ..+.+|+|+|+||+...
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~ 145 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVP 145 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCC
Confidence 36889987765322 23342 35899999999998664
|
|
| >PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.73 E-value=19 Score=30.77 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=46.9
Q ss_pred CCCeEEE-EeCCCcEEEEEEeccccCCceeEEEEecC--CCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCC
Q 020796 81 MWNPVLF-KLPSNGLLLFYKIGQEVQKWSGCMKRSYN--KGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWN 157 (321)
Q Consensus 81 ~~~p~l~-~~~~G~l~l~~~~~~~~~~~~~~~~~S~D--~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~ 157 (321)
...|.+| ..|+...+|+|+-+. ..-.++.|+| +-..|+.|+.+..+........++ |-.++|.
T Consensus 76 ~vAP~vFYFaPk~~W~L~yQwg~----~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~i---D~~vI~D------- 141 (271)
T PF03664_consen 76 AVAPQVFYFAPKNIWYLAYQWGP----AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPI---DQWVICD------- 141 (271)
T ss_pred cccceEEEecCCcEEEEEEecCC----CcceeecCCCCCCCccCCCCcccccccccCCCCCce---eeEEEec-------
Confidence 3447775 457777777776431 1113556665 567899999987543100000111 1112221
Q ss_pred CCcEEEEEECCCCceeEEeece
Q 020796 158 SWGSWMEVTVDAGRSWRKYGPI 179 (321)
Q Consensus 158 ~~~~~~~~S~D~G~tW~~~~~~ 179 (321)
....+++.+.|+|+-.....++
T Consensus 142 ~~n~yLFfa~DnGkiYRs~~~i 163 (271)
T PF03664_consen 142 DTNMYLFFAGDNGKIYRSSMPI 163 (271)
T ss_pred CCceEEEEcCCCCcEEEeccch
Confidence 2246788888888887765544
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process |
| >cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases | Back alignment and domain information |
|---|
Probab=86.71 E-value=6.3 Score=34.72 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=39.3
Q ss_pred cccceEEEecC-CcEEEEEecCCCCCCCCcEEEEEEeCC--C--CcCCcEEccC-CC---CCCCCCeEEEEeCCCcEEEE
Q 020796 27 CHASTIVEVDK-GHFLVAYFGGSCEGAPDVKIWLQTFKD--G--RWQSPIIADE-EP---NVPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 27 ~~~p~l~~~~~-g~l~~~~~~~~~~g~~~~~i~~s~s~~--G--tWs~~~~~~~-~~---~~~~~~p~l~~~~~G~l~l~ 97 (321)
..+|.|+.+.. ++.+++|..+ .+.+++++| + .|+.++.+.. .. .....++.+ ...+++.+||
T Consensus 78 fwAPqVfyf~pk~kwYL~Yq~~--------~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YLf 148 (303)
T cd08987 78 RVAPQVFYFAPQNKWYLIYQWW--------PAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYLF 148 (303)
T ss_pred cccCEEeeeccCCEEEEEEecC--------ceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEEE
Confidence 45899986664 4555555432 255788875 4 8999997743 11 112244555 4457888888
Q ss_pred EE
Q 020796 98 YK 99 (321)
Q Consensus 98 ~~ 99 (321)
+.
T Consensus 149 f~ 150 (303)
T cd08987 149 FS 150 (303)
T ss_pred Ee
Confidence 65
|
The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=86.43 E-value=5.2 Score=34.39 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=57.6
Q ss_pred EEcCCCeEEEEEeecCCCCcEE-EEEec-cCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEE---
Q 020796 194 FHTANRTLRVLMRSFNGIGRVC-MSESC-DGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALS--- 268 (321)
Q Consensus 194 ~~~~~G~l~~~~r~~~~~~~~~-~~~S~-D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S--- 268 (321)
..++||+++...-...+...+. +.-+. |+...|.+.... +..+.....+..++||+++++.... .....+.=.
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-m~~~RWYpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~ 150 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-MQSGRWYPTATTLPDGRVLIVGGSN-NPTYEFWPPKGP 150 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-ccCCCccccceECCCCCEEEEeCcC-CCcccccCCccC
Confidence 3568999987664433222222 22222 556788764321 3333334567889999999997432 000000000
Q ss_pred cCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEEe
Q 020796 269 KDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 269 ~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
.....+|.....+.+ .....-||.+.+++||.|++...+
T Consensus 151 ~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCceeeecchhhhc-cCccccCceEEEcCCCCEEEEEcC
Confidence 000111111111111 123468999999999998866544
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >cd08985 GH43_6 Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=86.25 E-value=22 Score=30.97 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=103.1
Q ss_pred ccccceEEEecCCcEEEEEecCCCCC-CCCcEEEEEEeCCC-CcCCcEE-ccCC-------CCCCCCCeEEEEe-CCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEG-APDVKIWLQTFKDG-RWQSPII-ADEE-------PNVPMWNPVLFKL-PSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g-~~~~~i~~s~s~~G-tWs~~~~-~~~~-------~~~~~~~p~l~~~-~~G~l 94 (321)
+.|.+.|+... |+.++. .+....+ ..-..+.+.+|+|- +|+.... +... +....+.|.+... .+|+-
T Consensus 2 ~ah~~~i~~~~-~~yY~y-gs~~~~~~~~~~gi~~~sS~DLvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y 79 (265)
T cd08985 2 QAHGGGILKVG-GTYYWY-GENKGGGDTAFGGVSCYSSTDLVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKY 79 (265)
T ss_pred ccccCceEEEC-CEEEEE-EEecCCCCcccccEEEEECCCCccceECceeccccccccccccCcEEECCeEEEeCCCCEE
Confidence 46888998776 566653 3322111 11234667778885 9997654 3221 1224677888765 46888
Q ss_pred EEEEEeccc-cCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCcee
Q 020796 95 LLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 95 ~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW 173 (321)
+|+|..... .......++.|++=-.-|+......+.....+-..+.+..||+.++....+ ....+.+..-+++..++
T Consensus 80 ~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~--~~~~i~i~~L~~d~~~~ 157 (265)
T cd08985 80 VMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDR--DNSDLYIYRLTDDYLSV 157 (265)
T ss_pred EEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecC--CCCceEEEEeCCCcccc
Confidence 887775211 122234567776543446543322111111122334455678866543221 12345666666677776
Q ss_pred EEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc
Q 020796 174 RKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~ 230 (321)
.........+ ...| |.+... +|..++++.... ....+.+++|++---.|+...
T Consensus 158 ~~~~~~~~~~---~~~EaP~i~K~-~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~ 213 (265)
T cd08985 158 TGEVTTVFVG---AGREAPAIFKR-NGKYYLLTSGLTGWNPNDARYATATSILGPWTDLG 213 (265)
T ss_pred cceEEEccCC---CccccceEEEE-CCEEEEEEccCCCccCCceEEEEecCCCCCccccC
Confidence 5432111111 2233 566654 688888875432 123566677777666677654
|
This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e |
| >cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins | Back alignment and domain information |
|---|
Probab=85.81 E-value=28 Score=31.77 Aligned_cols=115 Identities=15% Similarity=0.244 Sum_probs=63.6
Q ss_pred cEEEEEECCCCceeEEeeceecCC-----CCcceeeeeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCCC
Q 020796 160 GSWMEVTVDAGRSWRKYGPIYIPN-----ESLSVIQPVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs~ 228 (321)
.+.++.|+ +|.+|+....+...+ ...+...|.++.. +|+.+|+++... ....+.+++|++.--.|+.
T Consensus 80 ~I~~A~S~-Dgv~W~~~g~~L~~~~~g~Wd~~~vwaP~Vi~~-dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr 157 (349)
T cd08992 80 EIWHATSK-DGWTWKEEGPAIGRGEKGAYDDRSVFTPEVLEH-EGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTK 157 (349)
T ss_pred EEEEEECC-CCCCceECCccccCCCCCCccccceECcEEEEE-CCEEEEEEEecccccCCCCcceEEEEEECCccccccc
Confidence 35555565 578998776432211 1234567787764 689999986421 1235666777665445986
Q ss_pred Ccc-CCCCCCC------------------------CceeEEEcCCCcEEEEEeCC----------CCCeEEEEEEcCCCC
Q 020796 229 AKP-TQLLNPN------------------------SGIDGVKLKDGRLLLAYNTV----------SRGVLKVALSKDDGD 273 (321)
Q Consensus 229 ~~~-~~~~~~~------------------------~~~~~~~~~~g~~~lv~~~~----------~r~~l~~~~S~D~G~ 273 (321)
... +-.|... ..+.++. .+|+.+|.|+.. ....+.+++|.+---
T Consensus 158 ~d~Pil~p~~dg~w~~d~~~~~~~~~~g~wD~~~v~~P~v~~-~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~G 236 (349)
T cd08992 158 SDEPILSPSNDGIWKGDEDNRFLVKKKGSFDSHKVHDPCLFP-FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEG 236 (349)
T ss_pred CCCcEecCCcCCceeeccCceeEeccCCCcccCceECCEEEE-ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCC
Confidence 321 1011100 0113344 368999998643 123578888875444
Q ss_pred CCCc
Q 020796 274 SWHD 277 (321)
Q Consensus 274 tW~~ 277 (321)
-|.+
T Consensus 237 Pf~r 240 (349)
T cd08992 237 PYVK 240 (349)
T ss_pred CCEe
Confidence 5654
|
This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. |
| >KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.10 E-value=28 Score=33.06 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCcEEEEEecCCC-CCCCCcEEE-EEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEEeccccCC---
Q 020796 37 KGHFLVAYFGGSC-EGAPDVKIW-LQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYKIGQEVQK--- 106 (321)
Q Consensus 37 ~g~l~~~~~~~~~-~g~~~~~i~-~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~~~~~~~~--- 106 (321)
+|..+++|.=+.. .-.+++ ++ =+.|+|= +|.. |-.+.++. ...++.-....+++|.-.++|+. .....
T Consensus 69 kG~yHLFyQyNP~gavwg~i-vWGHavSkDLinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vilytg-~d~~~rqV 146 (571)
T KOG0228|consen 69 KGKYHLFYQYNPKGAVWGNI-VWGHAVSKDLINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVILYTG-IDPNNRQV 146 (571)
T ss_pred CcEEEEEEecCCCCceeeee-EeeeecchhhccccccCcccCCCCccccCccccceEEEccCCCeEEEecc-cCcCceEE
Confidence 4777775533322 112232 33 3456776 9986 33344322 12455555667788887777763 22111
Q ss_pred ------c----eeEEEEecCCCCCCCCCccCCCCCCCCCCCccE--EccCCeEEEeeecccCCCCcEEEEEECCCCceeE
Q 020796 107 ------W----SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPI--LLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWR 174 (321)
Q Consensus 107 ------~----~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~--~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~ 174 (321)
+ ...+..|.|+|.++..+..+..-..-..+.+.+ ..++|+|.+..... .......+++++++=++|+
T Consensus 147 qn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk-~~q~g~a~~Y~S~Df~~W~ 225 (571)
T KOG0228|consen 147 QNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSK-IKQRGKAIIYSSDDFKHWT 225 (571)
T ss_pred EEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEee-cCccceEEEEeccchhhhh
Confidence 0 113678899999998776543210011222222 33578886543221 1234567778888889999
Q ss_pred Eee
Q 020796 175 KYG 177 (321)
Q Consensus 175 ~~~ 177 (321)
+..
T Consensus 226 k~~ 228 (571)
T KOG0228|consen 226 KSS 228 (571)
T ss_pred ccc
Confidence 865
|
|
| >cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase | Back alignment and domain information |
|---|
Probab=84.32 E-value=33 Score=31.32 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=33.6
Q ss_pred CcEEEEEEeCCC-CcCCcEEccCC---CCCCCCCeEEEEeCCCcEEEEEEec
Q 020796 54 DVKIWLQTFKDG-RWQSPIIADEE---PNVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 54 ~~~i~~s~s~~G-tWs~~~~~~~~---~~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
...+....|+|+ +|.....+.++ +...++.+..+...+|+++|||+..
T Consensus 40 ~~~wgh~~S~dlv~W~~~~~l~p~~~~d~~g~wSGsa~~~~dg~~~lfYTg~ 91 (349)
T cd08997 40 DARIGYFYSRAGGNWIDGGKVFPDGLSPGSREWSGSATLDDDGTVQLFYTAV 91 (349)
T ss_pred ceEEEEEEeCCCCcccCCCccCCCCcccCCCeEcceEEEeCCCeEEEEEecc
Confidence 456888889888 99985443332 2345666776666679999999953
|
Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n |
| >KOG3511 consensus Sortilin and related receptors [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.80 E-value=51 Score=33.12 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=48.3
Q ss_pred eeeeEEecCCCCCCCccccceEEEecC-CcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEe
Q 020796 11 VAEEFTFPANSAPFKSCHASTIVEVDK-GHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKL 89 (321)
Q Consensus 11 ~~~~~~f~~~~~~~~~~~~p~l~~~~~-g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~ 89 (321)
+.+...|+....+... -.|+.++. +...+++.. +..++.|++.|.||...+.+.+. . ++.+
T Consensus 180 ~l~~~~fq~~~~~~~~---~~ll~~ps~~D~~l~~~~-------dqkL~iS~D~G~tW~li~ev~~~--~------~~~d 241 (720)
T KOG3511|consen 180 FLQGNTFQPKVPPFPA---ADLLFHPSVSDGLLLLST-------DQKLWISKDGGRTWELIHEVTGL--Y------WFGD 241 (720)
T ss_pred hcccceecccCCCchh---hhheeccccCccceeeec-------cCcEEEecCCCccceEeeeccce--e------EEee
Confidence 5666677776433222 23344443 222222212 12466666555599998874421 1 1112
Q ss_pred CCCc-EEEEEEeccccCCceeEEEEecCCCCCCCCCccC
Q 020796 90 PSNG-LLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQL 127 (321)
Q Consensus 90 ~~G~-l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l 127 (321)
..+- +..-+.. .........+.+|.|.|++|.+....
T Consensus 242 v~~~~~~~~~~~-~e~~~~~~~fyyT~D~Gksw~e~~l~ 279 (720)
T KOG3511|consen 242 VGNIPFTIPYRA-FEAIDVSSEFYYTLDRGKSWNEITLS 279 (720)
T ss_pred ccCccccccccc-ccccCCCceEEEEcccCcccceeecc
Confidence 1111 1111111 11122345688999999999987653
|
|
| >cd08988 GH43_ABN Glycosyl hydrolase family 43 | Back alignment and domain information |
|---|
Probab=81.59 E-value=36 Score=29.81 Aligned_cols=186 Identities=15% Similarity=0.172 Sum_probs=90.9
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-ccCCC----------CCCCCCeEEEEeCCCcEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-ADEEP----------NVPMWNPVLFKLPSNGLL 95 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~~~~----------~~~~~~p~l~~~~~G~l~ 95 (321)
|.|+|+... ++.+++ ... . .+.+.+|+|- +|+.... +...+ ....+.|.+... +|+-+
T Consensus 1 ~DP~vi~~~-~~YY~~-~T~-----~--g~~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~G~yy 70 (279)
T cd08988 1 HDPVIIKEG-DTWYVF-GTG-----P--GITILSSKDLVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQH-NGKFY 70 (279)
T ss_pred CCCEEEEEC-CEEEEE-Eec-----C--CEEEEECCCcCCccccCccccCCCccccccCCCCCCCEecceEEEE-CCEEE
Confidence 568998876 566654 222 1 3677888886 9987543 22111 134678888765 69999
Q ss_pred EEEEecccc-CCceeEEEEecC-CCC----CCCCCccCCC-C---CCCCCCCccEEccCCeEEEeeecccCCCCcEEEE-
Q 020796 96 LFYKIGQEV-QKWSGCMKRSYN-KGV----TWSEREQLPP-G---ILGPSKNKPILLENGLLLCGSSVESWNSWGSWME- 164 (321)
Q Consensus 96 l~~~~~~~~-~~~~~~~~~S~D-~G~----TWs~~~~l~~-~---~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~- 164 (321)
|+|...... ......+..|++ .|. .|+.+..+.. . ....+-+.+++..||+.++.. ...+. .+.+.
T Consensus 71 lyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~-g~~~~--gi~~~e 147 (279)
T cd08988 71 LYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSF-GSFWG--GIKLFE 147 (279)
T ss_pred EEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEe-cccCC--CEEEEE
Confidence 988753221 112344666655 233 2554333321 1 111133334566679987752 21111 23333
Q ss_pred EECCCCce--eEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCC
Q 020796 165 VTVDAGRS--WRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWS 227 (321)
Q Consensus 165 ~S~D~G~t--W~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs 227 (321)
.+.|.++. -.....+..........| |.+.. .+|..++++.... ....+.+++|++----|+
T Consensus 148 L~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k-~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~ 218 (279)
T cd08988 148 LDKDTMKPAEPGELHSIAGRERSSAAIEAPFILY-RGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYL 218 (279)
T ss_pred ECcccCCccCCCcceEEeccCCCCCceEeeEEEE-cCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCC
Confidence 34443331 011111111111112334 45554 4688888764321 123566777765333344
|
This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla |
| >PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) | Back alignment and domain information |
|---|
Probab=81.44 E-value=19 Score=27.69 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=27.2
Q ss_pred cEEEEEECCCCceeEEeeceecCCC-------Ccc--eeeeeEEEcC-CCeEEEEEeec
Q 020796 160 GSWMEVTVDAGRSWRKYGPIYIPNE-------SLS--VIQPVPFHTA-NRTLRVLMRSF 208 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~~~~~~~~~-------~~~--~~~~~~~~~~-~G~l~~~~r~~ 208 (321)
-..|-+|.|+|+||.... +..+.. ... ..+..+...+ .|+..+.+|..
T Consensus 43 I~rVEVS~DgG~tW~~A~-l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~ 100 (131)
T PF03404_consen 43 IARVEVSTDGGKTWQEAT-LDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRAT 100 (131)
T ss_dssp EEEEEEESSTTSSEEE-E-EESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEE
T ss_pred eEEEEEEeCCCCCcEEeE-eccCCCcccccccCcccceeeeccCcCccccceEEEEEEe
Confidence 457889999999999875 332221 111 1233333333 47777777654
|
MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B .... |
| >PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=81.24 E-value=28 Score=29.80 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=29.7
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC---C-CcCCcEEccC
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD---G-RWQSPIIADE 75 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~---G-tWs~~~~~~~ 75 (321)
.-.|.|+++...++|...++- | .....++++.| - .|+.|+.+..
T Consensus 76 ~vAP~vFYFaPk~~W~L~yQw---g--~~~fsY~Ts~DptnpngWSapq~lf~ 123 (271)
T PF03664_consen 76 AVAPQVFYFAPKNIWYLAYQW---G--PAAFSYSTSSDPTNPNGWSAPQPLFS 123 (271)
T ss_pred cccceEEEecCCcEEEEEEec---C--CCcceeecCCCCCCCccCCCCccccc
Confidence 346899988887777665542 2 12356788765 2 8999998753
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A Length = 438 | Back alignment and structure |
|---|
Score = 164 bits (415), Expect = 3e-47
Identities = 40/311 (12%), Positives = 81/311 (26%), Gaps = 28/311 (9%)
Query: 11 VAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDGRWQS 69
+ A H + + G + Y + G D ++ + G W +
Sbjct: 7 IPHRLVGKAL-YESYYDHFGQMDILSDGSLYLIYRRATEHVGGSDGRVVFSKLEGGIWSA 65
Query: 70 PIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLP- 128
P I + + +PS + + S + GVTW + L
Sbjct: 66 PTIVAQAGGQDFRDVAGGTMPSG---RIVAASTVYETGEVKVYVSDDSGVTWVHKFTLAR 122
Query: 129 PGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSV 188
G + + + ++ + D G +W + IY N
Sbjct: 123 GGADYNFAHGKSFQVGARYVIPLYAATGVNYELKWLESSDGGETWGEGSTIYSGN--TPY 180
Query: 189 IQPVPFHTANRTLRVLMRSFNGIG-RVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLK 247
+ + + + R +G G + S D G TW+ N +S L
Sbjct: 181 NETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGTWTDQGNVTAQNGDSTDI---LV 237
Query: 248 DGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLE----------------ENLAMEFSY 291
L Y+ + + + + L + Y
Sbjct: 238 APSLSYIYSEGGTPHVVLLYTNRTTHFCYYRTILLARAVAGSSGWTERVPAYSAPAASGY 297
Query: 292 PAVIQASDGSV 302
+ + +
Sbjct: 298 TSQVVLGGRRI 308
|
| >2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Length = 686 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 5e-34
Identities = 44/248 (17%), Positives = 94/248 (37%), Gaps = 30/248 (12%)
Query: 96 LFYKIG--QEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSS- 152
+FYK + M S N+G +W + + LPP + G N L L SS
Sbjct: 433 VFYKDSLFKVTPTNYIAMTTSQNRGESWEQFKLLPPFL-GEKHNGTYLCPGQGLALKSSN 491
Query: 153 ---VESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN 209
++ S ++ D+G++W+K + + + +R R+
Sbjct: 492 RLIFATYTSGELTYLISDDSGQTWKKSSAS--IPFKNATAEAQMVELRDGVIRTFFRTTT 549
Query: 210 GIGRVCMSESCDGGLTWSYAKPTQLLNPN------SGIDGVKLKDGRLLLAYNTVS---- 259
G ++ S D G TWS + S I +L DG+ + +T +
Sbjct: 550 G--KIAYMTSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDGKEAVILSTPNSRSG 607
Query: 260 ----RGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITY----TYNRT 311
+ V+ + +DD W ++ + ++Y A+ + + + + + +++R
Sbjct: 608 RKGGQLVVGLVNKEDDSIDWKYHYDIDLP-SYGYAYSAITELPNHHIGVLFEKYDSWSRN 666
Query: 312 QIKHVVLL 319
++ ++
Sbjct: 667 ELHLSNVV 674
|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Length = 679 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 43/259 (16%)
Query: 96 LFYK--IGQEVQKWSGCMKRSYNKGVTWSEREQLPP--------GILGPSKNKPILLEN- 144
+FYK + + M+ S ++G +WS+ + + ++GP K I
Sbjct: 413 IFYKNSVFKAFPTNYLAMRYSDDEGASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGEN 472
Query: 145 -GLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRV 203
G LL + +S + D G +W + + + Q V + +L+
Sbjct: 473 AGRLLVPLYSK--SSAELGFMYSDDHGDNWTYVEADNLTGGATAEAQIVE--MPDGSLKT 528
Query: 204 LMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPN------SGIDGVKLKDGRLLLAYNT 257
+R+ + + S DGG TWS P Q ++ S I+ + DG+ + ++
Sbjct: 529 YLRTGSN--CIAEVTSIDGGETWSDRVPLQGISTTSYGTQLSVINYSQPIDGKPAIILSS 586
Query: 258 VS------RGVLKVALSKDDGDSWHDALTLE-------ENLAMEFSYPAVIQASDGSVHI 304
+ G + + L D G++ D ++E + M +SY + + DG V +
Sbjct: 587 PNATNGRKNGKIWIGLVNDTGNTGIDKYSVEWKYSYAVDTPQMGYSYSCLAELPDGQVGL 646
Query: 305 TY------TYNRTQIKHVV 317
Y + N +K ++
Sbjct: 647 LYEKYDSWSRNELHLKDIL 665
|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Length = 679 | Back alignment and structure |
|---|
Score = 41.2 bits (95), Expect = 3e-04
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 7/170 (4%)
Query: 116 NKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRK 175
+ +T + + G + + + S +++ + M + D G SW
Sbjct: 383 DTNLTCKQYDYNFSGNNLIESKTDVDVNMNIFYKNSVFKAFPTNYLAMRYSDDEGASWSD 442
Query: 176 YGPIY-IPNESLSVIQPVPFH-----TANRTLRVLM-RSFNGIGRVCMSESCDGGLTWSY 228
+ E + P T R+L+ + S D G W+Y
Sbjct: 443 LDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKSSAELGFMYSDDHGDNWTY 502
Query: 229 AKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDA 278
+ L + + L Y + S D G++W D
Sbjct: 503 VEADNLTGGATAEAQIVEMPDGSLKTYLRTGSNCIAEVTSIDGGETWSDR 552
|
| >4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} Length = 523 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 2e-25
Identities = 51/332 (15%), Positives = 104/332 (31%), Gaps = 55/332 (16%)
Query: 32 IVEVDKGHFLVAY---FGGSCEGAPDVKIWLQTFKDG--RWQSPIIA---------DEEP 77
+V + G L Y + S + + I + D W+ +A
Sbjct: 186 LVTTNNGTLLGVYDIRYNSSVDLQEKIDIGVSRSTDKGQTWEPMRVAMTFKQTDGLPHGQ 245
Query: 78 NVPMWNPVLFKLPSNGLLLFY----------------KIGQEVQKWSGCMKRSYNKGVTW 121
N +L +N + + + + +S + G TW
Sbjct: 246 NGVGDPSILVDEKTNTIWVVAAWTHGMGNERAWWNSMPGMTPDETAQLMLVKSEDDGKTW 305
Query: 122 SEREQLPPGI-------LGPSKNKPILLENG-LLLCGSSVESWNSWGSWMEVTVDAGRSW 173
SE + + L + I +++G L+ +++ + + + D G++W
Sbjct: 306 SEPINITSQVKDPSWYFLLQGPGRGITMQDGTLVFPIQFIDATRVPNAGIMYSKDRGKTW 365
Query: 174 RKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQ 233
+ V + L + MR G R ++ + D G TW+ ++
Sbjct: 366 HLHNLARTNTTEAQVAE-----VEPGVLMLNMRDNRGGSRA-VATTKDLGKTWTEHPSSR 419
Query: 234 LLNPNSGIDGVKLK-------DGRLLLAY----NTVSRGVLKVALSKDDGDSWHDALTLE 282
S +K G+ LL + T R + + S D G +W +
Sbjct: 420 SALQESVCMASLIKVNAKDNITGKDLLLFSNPNTTKGRNHITIKASLDGGLTWPTEHQVL 479
Query: 283 ENLAMEFSYPAVIQASDGSVHITYTYNRTQIK 314
+ A + Y + +V I Y + +
Sbjct: 480 LDEAEGWGYSCLSMIDKETVGIFYESSVAHMT 511
|
| >1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A* Length = 781 | Back alignment and structure |
|---|
Score = 91.7 bits (226), Expect = 1e-20
Identities = 38/288 (13%), Positives = 76/288 (26%), Gaps = 49/288 (17%)
Query: 77 PNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP------- 129
+ V + + + + + W++ +
Sbjct: 483 AQIDGRLHVQKIVLTQQGHNLVEFDAFYLAQQTPEVEKDLEKLGWTKIKTGNTMSLYGNA 542
Query: 130 --------GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYI 181
GI + +NG L+ + V + D G +W+ + I
Sbjct: 543 SVNPGPGHGITLTRQQNISGSQNGRLIYPAIVLDRFFLNVMSIYSDDGGSNWQTGSTLPI 602
Query: 182 PNESLSVIQPVPFHT--------ANRTLRVLMRSFNG-------IGRVCMSESCDGGLTW 226
P S N L + R S DGG+TW
Sbjct: 603 PFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQFLSKDGGITW 662
Query: 227 SYAKPTQLL--------NPNSGIDGVKLKDGRLLLAY--------NTVSRGVLKVALSKD 270
S + ++ I + DG L + T R L + S D
Sbjct: 663 SLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFD 722
Query: 271 DGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVL 318
+G +W + L +Y + Q + + + + ++ + +
Sbjct: 723 EGVTWKGPIQLVNG---ASAYSDIYQLDSENAIVIVETDNSNMRILRM 767
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* Length = 355 | Back alignment and structure |
|---|
Score = 88.4 bits (218), Expect = 4e-20
Identities = 46/261 (17%), Positives = 75/261 (28%), Gaps = 40/261 (15%)
Query: 82 WNPVLFKLPSNGLLLFY-KIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILG-PSKNKP 139
P +LP+ LL + E + RS + G TW+E ++ + G + +P
Sbjct: 24 LYPRNEQLPNGDLLATWENYSPEPPAVYFPIYRSKDHGKTWNEISRVHDTVNGYGLRYQP 83
Query: 140 ILLE---------NGLLLCGSSVESWNSWGSWMEVTV----DAGRSWRKYGPIYIPNESL 186
L G LL S S + S ++ + D G +W I E+
Sbjct: 84 FLYSLPERVGSFKKGTLLLAGS--SIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEAR 141
Query: 187 SVIQPVPFH-----TANRTLRVLM---RSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPN 238
P L R G+ + + + W
Sbjct: 142 PNNGLTPVWEPFLLANKGKLICYYSDQRDNATYGQTMVHQVTNDLKNWGPVVEDVTYPTY 201
Query: 239 SGIDG----VKLKDGRLLLAYNTVS-------RGVLKVALSKDDGDSWHDALTLE---EN 284
+ G KL +G+ Y S L LS D ++ A +
Sbjct: 202 TDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRLS-SDPENIASAPGQRLVVSS 260
Query: 285 LAMEFSYPAVIQASDGSVHIT 305
S P + G + T
Sbjct: 261 GTQPTSSPYAVWTPYGGENGT 281
|
| >2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* Length = 471 | Back alignment and structure |
|---|
Score = 85.9 bits (211), Expect = 6e-19
Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 47/302 (15%)
Query: 47 GSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEV-- 104
G+ + ++ K ++ + + + +
Sbjct: 151 GAYTIRENGTVYTPDGKATDYRVVVDPVKPAYSDKGDLYKGNQLLGNIYFTTNKTSPFRI 210
Query: 105 -QKWSGCMKRSYNKGVTWSEREQLPPGI-------LGPSKNKPILLENGLL--------- 147
+ M S + G TWS + + P + LG I+L NG
Sbjct: 211 AKDSYLWMSYSDDDGKTWSAPQDITPMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVY 270
Query: 148 LCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI--------------YIPNESLSVIQPVP 193
+ S S + + D G++W + + N +
Sbjct: 271 TTNNVSHLNGSQSSRIIYSDDHGKTWHAGEAVNDNRQVDGQKIHSSTMNNRRAQNTESTV 330
Query: 194 FHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLK----DG 249
N +++ MR G + ++ S DGG+TW + + +
Sbjct: 331 VQLNNGDVKLFMRGLTG--DLQVATSKDGGVTWEKDIKRYPQVKDVYVQMSAIHTMHEGK 388
Query: 250 RLLLAYNTVS-----RGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHI 304
++ N V + ++ +W +++ EF+Y ++ + +G I
Sbjct: 389 EYIILSNAGGPKRENGMVHLARVEENGELTWLKHNPIQKG---EFAYNSLQELGNGEYGI 445
Query: 305 TY 306
Y
Sbjct: 446 LY 447
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A Length = 367 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 3e-18
Identities = 31/230 (13%), Positives = 56/230 (24%), Gaps = 36/230 (15%)
Query: 84 PVLFKLPSNGLLLFY-KIGQEVQKWSGCMKRSYNKGVTWSEREQLPP----------GIL 132
+L LL + E + +S + G TW E ++ L
Sbjct: 31 ARPLELSDGTLLGTWENYSPEPPNVWFPIVKSKDGGKTWKEISKVKDTQNNWGLRYQPQL 90
Query: 133 GPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV--DAGRSWRKYGPIYI------PNE 184
G +LC S + + +EV D G +W + +
Sbjct: 91 YELPRAFGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPG 150
Query: 185 SLSVIQPVPFHTANRT--LRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGID 242
V +P + R + + ++ WS
Sbjct: 151 LTPVWEPFLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKKWSKVVDDTKYANYYARP 210
Query: 243 G----VKLKDGRLLLAYNTVS----------RGVLKVALSKDDGDSWHDA 278
G KL + + Y + LS D + +
Sbjct: 211 GMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFPVYYRLS-KDPQKFLNK 259
|
| >2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* Length = 386 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 3e-17
Identities = 46/345 (13%), Positives = 81/345 (23%), Gaps = 62/345 (17%)
Query: 17 FPANSAPFKSCHASTIVEVDKGHFLVAYFG--GSCEGAPDVKIWLQTFKDG--------R 66
+ F S +V G L G + + D+ + + K
Sbjct: 28 KLSTGIGFHSFRIPAVVRTTTGRILAFAEGRRHTNQDFGDINLVYKRTKTTANNGASPSD 87
Query: 67 WQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSG----------------- 109
W+ NP N + LF +G
Sbjct: 88 WEPLREVVGSGAGTWGNPTPVVDDDNTIYLFLSWNGATYSQNGKDVLPDGTVTKKIDSTW 147
Query: 110 ------CMKRSYNKGVTWSEREQLPPGI-------LGPSKNKPILLENGLLLCGSSVESW 156
+ S + G TWS+ L + I L G L+
Sbjct: 148 EGRRHLYLTESRDDGNTWSKPVDLTKELTPDGWAWDAVGPGNGIRLTTGELVI------P 201
Query: 157 NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCM 216
+ + R+W E V P + L R G +
Sbjct: 202 AMGRNIIGRGAPGNRTWSVQRLSGAGAEGTIVQTP------DGKLYRNDRPSQK-GYRMV 254
Query: 217 SESCDGGLTWSYAKPTQL--LNPNSGIDGVKLKDGRLLLAYNTVS--RGVLKVALSKD-D 271
+ G S + R + + R ++V +S D D
Sbjct: 255 ARGTLEGFGAFAPDAGLPDPACQGSVLRYNSDAPARTIFLNSASGTSRRAMRVRISYDAD 314
Query: 272 GDSWHDALTLEE----NLAMEFSYPAVIQASDGSVHITYTYNRTQ 312
++ LE+ E Y ++ + D + +
Sbjct: 315 AKKFNYGRKLEDAKVSGAGHEGGYSSMTKTGDYKIGALVESDFFN 359
|
| >1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* Length = 382 | Back alignment and structure |
|---|
Score = 78.1 bits (191), Expect = 2e-16
Identities = 40/346 (11%), Positives = 95/346 (27%), Gaps = 67/346 (19%)
Query: 32 IVEVDKGHFLVAYFGG---SCEGAPDVKIWLQTFKDG-----RWQSPII---ADEEPNVP 80
++ + L+A+ + ++ + + D +WQ+ + A + +
Sbjct: 27 LLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHRS 86
Query: 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWSG-----------CMKRSYNKGVTWSEREQLPP 129
M L+ + L LF+ C S + G TWS L
Sbjct: 87 MNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTD 146
Query: 130 GILGPSKNKPILL------------ENGLLLCGSSV------ESWNSWGSWMEVTVDAGR 171
+GP+ + L+ + ++ ++ D GR
Sbjct: 147 AAIGPAYREWSTFAVGPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGR 206
Query: 172 SWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP 231
+W + + V + V + + + + ++S + GL + ++
Sbjct: 207 TWARGHFVAQDTLECQVAE----VETGEQRVVTLNARSHLRARVQAQSTNDGLDFQESQL 262
Query: 232 TQLLNPNSG------------IDGVKLKDGRLLLAYNTVS-----RGVLKVALSKDDGDS 274
+ L + LL + + ++
Sbjct: 263 VKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEA 322
Query: 275 WHDALTLEENLAMEFSYPAVIQASDG---SVHITYTYNRTQIKHVV 317
W + + L + +Y + G S Y + +V
Sbjct: 323 WSEPVLLAKG---SCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIV 365
|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Length = 601 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 3e-14
Identities = 48/328 (14%), Positives = 96/328 (29%), Gaps = 55/328 (16%)
Query: 32 IVEVDKGHFLVAY----FGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPV-- 85
+ G L +Y G G + T W +
Sbjct: 26 LTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKGFSD 85
Query: 86 ---LFKLPSNGLLLFYKIGQ--------------EVQKWSGCMKRSYNKGVTWSEREQLP 128
L + + F+ Q + + S + G+TWS R
Sbjct: 86 PSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITA 145
Query: 129 -------PGILGPSKNKPILLENG-----LLLCGSSVESWNSWGSWMEVTVDAGRSWRKY 176
+ + I L G L+ + + + ++ + + D GR+WR
Sbjct: 146 DITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAG 205
Query: 177 GPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP-TQLL 235
+ + + + ++ + + R G ++ S DGG ++ L
Sbjct: 206 EAVGVG-----MDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHSYGPVTIDRDLP 260
Query: 236 NPNSGIDGVKL--------KDGRLLLAYNTVS---RGVLKVALSKDDGDSWHDALTLEEN 284
+P + ++ ++LL N S R + +S DDG +W + +
Sbjct: 261 DPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG 320
Query: 285 LAMEFSYPAVIQASDGSVHITYTYNRTQ 312
SY + DG+ + Y
Sbjct: 321 ---SMSYSTLTALPDGTYGLLYEPGTGI 345
|
| >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* Length = 449 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 2e-11
Identities = 47/319 (14%), Positives = 113/319 (35%), Gaps = 59/319 (18%)
Query: 56 KIWLQTFKDGR----WQSPIIADEEPNVPMW--NPVLFKLPSNGLLLFYKIGQEVQKWSG 109
K +L + + ++ D++ N + N + + + K G
Sbjct: 126 KEYLCLYDSSGKEFTVRENVVYDKDSNKTEYTTNALGDLFKNGTKIDNINSSTAPLKAKG 185
Query: 110 ----CMKRSYNKGVTWSEREQLPPGI-------LGPSKNKPILLENG-----LLLCGSSV 153
+ S + G TWSE + + + LG + + I ++NG +++
Sbjct: 186 TSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRIVVPVYYT 245
Query: 154 ESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTL------------ 201
S + + D+G++W + + ++
Sbjct: 246 NEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPN 305
Query: 202 -RVLMRSFNGIGRVCMSESCDGGLTW--SYAKPTQLLNPN---SGIDGVKLKDGRLLLAY 255
++ + N G + ++ S DGG TW + K T +L P S I+ + DG+ + +
Sbjct: 306 GQLKLFMRNLSGYLNIATSFDGGATWDETVEKDTNVLEPYCQLSVINYSQKVDGKDAVIF 365
Query: 256 N----------TVSRGVLKVALSKDDG-----DSWHDALTLEENLAMEFSYPAVIQASDG 300
+ TV G++ + ++G W ++ ++Y + + S+G
Sbjct: 366 SNPNARSRSNGTVRIGLINQVGTYENGEPKYEFDWKYNKLVKPG---YYAYSCLTELSNG 422
Query: 301 SVHITY-TYNRTQIKHVVL 318
++ + Y ++ ++ +
Sbjct: 423 NIGLLYEGTPSEEMSYIEM 441
|
| >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* Length = 449 | Back alignment and structure |
|---|
Score = 48.2 bits (113), Expect = 2e-06
Identities = 39/328 (11%), Positives = 89/328 (27%), Gaps = 60/328 (18%)
Query: 32 IVEVDKGHFLVAY----FGGSCEGAPDVKIWLQTFKDG--RWQSPI-IADEEPNVPMWNP 84
+ + +G + + GG+ D+ ++ +DG W I D + +
Sbjct: 28 LFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDYPDKSSVIDT 87
Query: 85 VLFKLPSNGLLLFYKI---------------GQEVQKWSGCMKRSYNKGVTWSEREQLPP 129
L + G + G + + + G ++ RE +
Sbjct: 88 TLIQDDETGRIFLLVTHFPSKYGFWNAGLGSGFKNIDGKEYLCLYDSSGKEFTVRENVVY 147
Query: 130 GILGPSKN----------KPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPI 179
K + + + +++ + + + D G++W + I
Sbjct: 148 DKDSNKTEYTTNALGDLFKNGTKIDNINSSTAPLKAKGTSYINLVYSDDDGKTWSEPQNI 207
Query: 180 YIPNESLSVIQPVPFHTANRTLR-----------VLMRSFNGIGRVCMSESCDGGLTWSY 228
+ + ++ V + G + S D G W+
Sbjct: 208 NFQVKKDWMKFLGIAPGRGIQIKNGEHKGRIVVPVYYTNEKGKQSSAVIYSDDSGKNWTI 267
Query: 229 AKPTQLLNPNSGIDGVKLK-----------------DGRLLLAYNTVSRGVLKVALSKDD 271
+ + K L + G L +A S D
Sbjct: 268 GESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRNLSGYLNIATSFDG 327
Query: 272 GDSWHDALTLEENLAMEFSYPAVIQASD 299
G +W + + + N+ + +VI S
Sbjct: 328 GATWDETVEKDTNVLEPYCQLSVINYSQ 355
|
| >1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 225 TWSYAKPTQLLNPNSGI----DGVKLKDGRLLL---AYNTVSRGVLKVALSKDDGDSWHD 277
WS +P S I D +K G++ + A + RG+ +V +S D G +W +
Sbjct: 254 NWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVE 313
Query: 278 A 278
A
Sbjct: 314 A 314
|
| >2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 213 RVCMSESCDGGLTWSYAKPTQLLNPNSGI----DGVKLKDGRLLL---AYNTVSRGVLKV 265
+ + + A Q L S + G + G L + A++ R V++V
Sbjct: 229 KGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRV 288
Query: 266 ALSKDDGDSWHDA 278
+S D G +W A
Sbjct: 289 DVSLDGGRTWKVA 301
|
| >1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 213 RVCMSESCDGGLTWSYAKPTQLLNPNSGI----DGVKLKDGRLLL---AYNTVSRGVLKV 265
+ + + A Q L S + G + G L + A++ R V++V
Sbjct: 323 KGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRV 382
Query: 266 ALSKDDGDSWHDA 278
+S D G +W A
Sbjct: 383 DVSLDGGRTWKVA 395
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| 4fj6_A | 523 | Glycoside hydrolase family 33, candidate sialidas; | 100.0 | |
| 2bf6_A | 449 | Sialidase, EXO-alpha-sialidase; sialic acid, hydro | 100.0 | |
| 2w20_A | 471 | Sialidase A; secreted, cell WALL, hydrolase, glyco | 100.0 | |
| 2xzi_A | 386 | KDNAse, extracellular sialidase/neuraminidase, put | 100.0 | |
| 2jkb_A | 686 | Sialidase B; intramolecular trans-sialidase, lyase | 100.0 | |
| 1w0p_A | 781 | Sialidase; hydrolase, neuraminidase, lectin; HET: | 100.0 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 100.0 | |
| 2sli_A | 679 | Intramolecular trans-sialidase; hydrolase, neurami | 100.0 | |
| 1so7_A | 382 | Sialidase 2; neuraminidase, ganglioside, sugar-ind | 100.0 | |
| 3sil_A | 379 | Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1 | 99.96 | |
| 1ms9_A | 648 | Trans-sialidase; trans-glycosylation, protein-acrb | 99.95 | |
| 3a72_A | 355 | EXO-arabinanase; arabinase, glycosyl hydrolase, hy | 99.91 | |
| 2ydt_A | 367 | EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; | 99.9 | |
| 3a72_A | 355 | EXO-arabinanase; arabinase, glycosyl hydrolase, hy | 99.87 | |
| 2ydt_A | 367 | EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; | 99.86 | |
| 1w0p_A | 781 | Sialidase; hydrolase, neuraminidase, lectin; HET: | 99.81 | |
| 2w20_A | 471 | Sialidase A; secreted, cell WALL, hydrolase, glyco | 99.77 | |
| 2bf6_A | 449 | Sialidase, EXO-alpha-sialidase; sialic acid, hydro | 99.77 | |
| 4fj6_A | 523 | Glycoside hydrolase family 33, candidate sialidas; | 99.72 | |
| 1w8o_A | 601 | Bacterial sialidase; 3D-structure, glycosidase, hy | 99.71 | |
| 1so7_A | 382 | Sialidase 2; neuraminidase, ganglioside, sugar-ind | 99.64 | |
| 2jkb_A | 686 | Sialidase B; intramolecular trans-sialidase, lyase | 99.62 | |
| 2xzi_A | 386 | KDNAse, extracellular sialidase/neuraminidase, put | 99.61 | |
| 2sli_A | 679 | Intramolecular trans-sialidase; hydrolase, neurami | 99.55 | |
| 3sil_A | 379 | Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1 | 99.53 | |
| 3h6j_A | 438 | Neuraminidase, sialidase; six-bladed beta-propelle | 99.5 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 99.29 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 99.29 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 99.28 | |
| 1ms9_A | 648 | Trans-sialidase; trans-glycosylation, protein-acrb | 99.23 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 99.17 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 99.16 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 99.14 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 99.11 | |
| 3h6j_A | 438 | Neuraminidase, sialidase; six-bladed beta-propelle | 99.05 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 99.05 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 98.99 | |
| 3f6k_A | 685 | Sortilin; protein sorting receptor, 10-bladed beta | 98.94 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 98.81 | |
| 3f6k_A | 685 | Sortilin; protein sorting receptor, 10-bladed beta | 98.64 | |
| 3qc2_A | 364 | Glycosyl hydrolase; 5-bladed beta propeller fold, | 98.34 | |
| 3taw_A | 356 | Hypothetical glycoside hydrolase; 5-bladed beta-pr | 98.29 | |
| 4ffh_A | 492 | Levan fructotransferase; glycoside hydrolase; HET: | 98.15 | |
| 3kst_A | 306 | Endo-1,4-beta-xylanase; structural genomics, joint | 98.1 | |
| 1vkd_A | 338 | Conserved hypothetical protein TM1225; structural | 98.01 | |
| 3qc2_A | 364 | Glycosyl hydrolase; 5-bladed beta propeller fold, | 98.0 | |
| 3pij_A | 526 | Beta-fructofuranosidase; five-bladed beta-propelle | 97.95 | |
| 1y4w_A | 518 | EXO-inulinase; glycoside hydrolase FAMI crystallog | 97.81 | |
| 3qz4_A | 311 | Endo-1,4-beta-xylanase D; 5-bladed beta-propeller | 97.79 | |
| 3taw_A | 356 | Hypothetical glycoside hydrolase; 5-bladed beta-pr | 97.76 | |
| 3kst_A | 306 | Endo-1,4-beta-xylanase; structural genomics, joint | 97.76 | |
| 1w2t_A | 432 | Beta fructosidase; hydrolase, glycosidase, inverta | 97.73 | |
| 3r4z_A | 374 | Glycosyl hydrolase family 32, N terminal; AGAR met | 97.71 | |
| 3p2n_A | 408 | 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p | 97.66 | |
| 3r4z_A | 374 | Glycosyl hydrolase family 32, N terminal; AGAR met | 97.64 | |
| 3qee_A | 307 | Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; | 97.62 | |
| 3ugf_A | 546 | Sucrose:(sucrose/fructan) 6-fructosyltransferase; | 97.58 | |
| 3qee_A | 307 | Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; | 97.57 | |
| 1vkd_A | 338 | Conserved hypothetical protein TM1225; structural | 97.51 | |
| 1uv4_A | 293 | Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy | 97.48 | |
| 4ak5_A | 404 | Anhydro-alpha-L-galactosidase; hydrolase, marine g | 97.47 | |
| 3pij_A | 526 | Beta-fructofuranosidase; five-bladed beta-propelle | 97.45 | |
| 3qz4_A | 311 | Endo-1,4-beta-xylanase D; 5-bladed beta-propeller | 97.45 | |
| 4ffh_A | 492 | Levan fructotransferase; glycoside hydrolase; HET: | 97.44 | |
| 1w2t_A | 432 | Beta fructosidase; hydrolase, glycosidase, inverta | 97.43 | |
| 3kf3_A | 509 | Invertase; GH32, glycoprotein, glycosidase, hydrol | 97.38 | |
| 4ak5_A | 404 | Anhydro-alpha-L-galactosidase; hydrolase, marine g | 97.36 | |
| 3p2n_A | 408 | 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p | 97.28 | |
| 1yrz_A | 528 | Xylan beta-1,4-xylosidase; structural genomics, ny | 97.21 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 97.16 | |
| 3vsf_A | 526 | Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana | 97.16 | |
| 2ac1_A | 541 | Invertase; five fold beta propeller, hydrolase; HE | 97.15 | |
| 1yif_A | 533 | Beta-1,4-xylosidase; glycosidase, xylan, structura | 97.13 | |
| 3cu9_A | 314 | Intracellular arabinanase; glycosyl hydrolase, hig | 97.09 | |
| 1y4w_A | 518 | EXO-inulinase; glycoside hydrolase FAMI crystallog | 97.09 | |
| 3c2u_A | 538 | Xylosidase/arabinosidase; tetramer, glycoside hydr | 97.08 | |
| 1st8_A | 543 | Fructan 1-exohydrolase IIA; five fold beta propell | 97.03 | |
| 3kf3_A | 509 | Invertase; GH32, glycoprotein, glycosidase, hydrol | 96.99 | |
| 3cu9_A | 314 | Intracellular arabinanase; glycosyl hydrolase, hig | 96.92 | |
| 2exh_A | 535 | Beta-D-xylosidase; glykosidase, hydrolsase, family | 96.86 | |
| 3sc7_X | 516 | Inulinase; glycoside hydrolase family 32, glycosyl | 96.85 | |
| 1yrz_A | 528 | Xylan beta-1,4-xylosidase; structural genomics, ny | 96.73 | |
| 3cpn_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 96.64 | |
| 1gyh_A | 318 | Arabinan endo-1,5-alpha-L-arabinosidase A; arabina | 96.51 | |
| 1gyh_A | 318 | Arabinan endo-1,5-alpha-L-arabinosidase A; arabina | 96.49 | |
| 1uv4_A | 293 | Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy | 96.47 | |
| 1yif_A | 533 | Beta-1,4-xylosidase; glycosidase, xylan, structura | 96.39 | |
| 3cpn_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 96.37 | |
| 3nqh_A | 441 | Glycosyl hydrolase; structural genomics, joint cen | 96.3 | |
| 1st8_A | 543 | Fructan 1-exohydrolase IIA; five fold beta propell | 96.3 | |
| 3akh_A | 468 | Putative secreted alpha L-arabinofuranosidase II; | 96.2 | |
| 3akh_A | 468 | Putative secreted alpha L-arabinofuranosidase II; | 96.19 | |
| 2ac1_A | 541 | Invertase; five fold beta propeller, hydrolase; HE | 96.16 | |
| 3ugf_A | 546 | Sucrose:(sucrose/fructan) 6-fructosyltransferase; | 96.12 | |
| 3vsf_A | 526 | Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana | 96.1 | |
| 3c2u_A | 538 | Xylosidase/arabinosidase; tetramer, glycoside hydr | 95.93 | |
| 3c7f_A | 487 | Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- | 95.89 | |
| 3zxk_A | 542 | Hiaxhd3; hydrolase, sugar binding protein; HET: XY | 95.87 | |
| 3sc7_X | 516 | Inulinase; glycoside hydrolase family 32, glycosyl | 95.61 | |
| 2exh_A | 535 | Beta-D-xylosidase; glykosidase, hydrolsase, family | 95.43 | |
| 3nqh_A | 441 | Glycosyl hydrolase; structural genomics, joint cen | 95.34 | |
| 1oyg_A | 447 | Levansucrase; glycoside hydrolase, beta-propeller, | 95.14 | |
| 2x8s_A | 470 | Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; | 94.73 | |
| 3lig_A | 634 | Fructosyltransferase; five bladed beta-propeller f | 93.76 | |
| 3c7f_A | 487 | Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- | 92.62 | |
| 3zxk_A | 542 | Hiaxhd3; hydrolase, sugar binding protein; HET: XY | 91.72 | |
| 3lig_A | 634 | Fructosyltransferase; five bladed beta-propeller f | 90.29 | |
| 2x8s_A | 470 | Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; | 90.27 | |
| 1oyg_A | 447 | Levansucrase; glycoside hydrolase, beta-propeller, | 89.07 | |
| 2yfr_A | 571 | Levansucrase, inulosucrase; fructosyltransferase, | 89.03 | |
| 3k1u_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 86.51 | |
| 1w18_A | 493 | Levansucrase; transferase, fructosyl transferase, | 85.36 | |
| 1w18_A | 493 | Levansucrase; transferase, fructosyl transferase, | 84.81 | |
| 3k1u_A | 330 | Beta-xylosidase, family 43 glycosyl hydrolase; str | 81.78 |
| >4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-39 Score=303.11 Aligned_cols=300 Identities=17% Similarity=0.211 Sum_probs=224.9
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCC----CCcEEEEEEeCC-C-CcCCcEEccCCC--------C
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGA----PDVKIWLQTFKD-G-RWQSPIIADEEP--------N 78 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~----~~~~i~~s~s~~-G-tWs~~~~~~~~~--------~ 78 (321)
+..||++++.++.++|+|+|+.+++|+|+|+|++. .++. +++.|+++||.| | ||++++.+...+ .
T Consensus 167 ~~~~~~~g~~g~~~~riPaL~~~~~G~Lla~~~~r-~~~~~D~~~~i~i~~~rS~DgG~tWs~~~~v~~~~~~~~~~~~~ 245 (523)
T 4fj6_A 167 GIGVRQAGDDGSAAFRIPGLVTTNNGTLLGVYDIR-YNSSVDLQEKIDIGVSRSTDKGQTWEPMRVAMTFKQTDGLPHGQ 245 (523)
T ss_dssp EEEEECTTGGGCSEEEEEEEEECTTSCEEEEEEEE-SSCSCCSSSSEEEEEEEESSTTSSCCCCEEEECCTTGGGCCGGG
T ss_pred eEEEECCCCCCcceEeccceEECCCCcEEEEEece-eccCCCCcCcEEEEEEEeCCCCCEeCCcEEeecccccccCcccc
Confidence 67799999889999999999999999999999774 2222 356789999986 5 999998776432 1
Q ss_pred CCCCCeEEEEeC-CCcEEEEEEeccc---cCC-------------ceeEEEEecCCCCCCCCCccCCCCCCC-------C
Q 020796 79 VPMWNPVLFKLP-SNGLLLFYKIGQE---VQK-------------WSGCMKRSYNKGVTWSEREQLPPGILG-------P 134 (321)
Q Consensus 79 ~~~~~p~l~~~~-~G~l~l~~~~~~~---~~~-------------~~~~~~~S~D~G~TWs~~~~l~~~~~g-------~ 134 (321)
..+++|+++.++ +|+|+|||..... ... ...++.+|+|+|+||+++..+++...+ .
T Consensus 246 ~~~~nP~lvvD~~tG~I~L~~~~~~g~~~~~~w~~~~~g~~~~~t~~~~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~ 325 (523)
T 4fj6_A 246 NGVGDPSILVDEKTNTIWVVAAWTHGMGNERAWWNSMPGMTPDETAQLMLVKSEDDGKTWSEPINITSQVKDPSWYFLLQ 325 (523)
T ss_dssp SCEEEEEEEECTTTCCEEEEEEECCSCTTSCGGGTCCSSSSTTTSCEEEEEEESSTTSSCCCCEECHHHHCCTTCSEEEE
T ss_pred ccccCceEEEECCCCeEEEEEEecccccccccccccccCCCCCcceEEEEEEcCCCCccCCCCeeecccccCCcceEEec
Confidence 346789999886 8999999763211 011 124688999999999999877532110 1
Q ss_pred CCCccEEccCCeEEEeeecccCCC-CcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCc
Q 020796 135 SKNKPILLENGLLLCGSSVESWNS-WGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGR 213 (321)
Q Consensus 135 ~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~ 213 (321)
..++.+++.+|+|+++.+.....+ ....+++|+|+|+||+....+. .++.||.++++++|+|++.+|.... +.
T Consensus 326 g~G~GI~l~dGrLv~P~~~~~~~g~~~s~i~~S~D~G~TW~~~~~~~-----~~~~e~~vve~~dG~L~~~~R~~~~-g~ 399 (523)
T 4fj6_A 326 GPGRGITMQDGTLVFPIQFIDATRVPNAGIMYSKDRGKTWHLHNLAR-----TNTTEAQVAEVEPGVLMLNMRDNRG-GS 399 (523)
T ss_dssp CSEECEECTTSCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCSE-----ETEEEEEEEEEETTEEEEEEEETTC-SB
T ss_pred CCCcceEEeCCeEEEEEEEEcCCCCEEEEEEEECCCCCeEEECCCCC-----ccccCCEEEEecCCEEEEEEEecCC-Cc
Confidence 224568899999999987543222 3567899999999999875332 2588999999999999999998643 44
Q ss_pred EEEEEeccCCcCCCCCcc--CCCCCCCCceeEEEcC-----CC-cEEEEEeCC---CCCeEEEEEEcCCCCCCCcce-ee
Q 020796 214 VCMSESCDGGLTWSYAKP--TQLLNPNSGIDGVKLK-----DG-RLLLAYNTV---SRGVLKVALSKDDGDSWHDAL-TL 281 (321)
Q Consensus 214 ~~~~~S~D~G~tWs~~~~--~~~~~~~~~~~~~~~~-----~g-~~~lv~~~~---~r~~l~~~~S~D~G~tW~~~~-~l 281 (321)
..+++|.|+|+||+++.. ..++.|.....++++. ++ +++|+.++. .|.++.+++|.|+|+||.... ++
T Consensus 400 r~v~~S~D~G~TWt~~~~~~~~L~~P~c~~Sii~~~~~~~~~g~~~lL~snp~~~~~R~~l~v~~S~D~G~TW~~~~~v~ 479 (523)
T 4fj6_A 400 RAVATTKDLGKTWTEHPSSRSALQESVCMASLIKVNAKDNITGKDLLLFSNPNTTKGRNHITIKASLDGGLTWPTEHQVL 479 (523)
T ss_dssp CEEEEESSTTSSCEECTTTTTSSBCSSCCCEEEEECGGGSTTCSCEEEEEEECCSSSSCCEEEEEESSTTSCCCGGGEEE
T ss_pred EEEEEECCCCCccCcCcCccccCCCCCcccEEEEEecccCCCCCcEEEEEccCCCCccccceEEEeCCCCCCCccCceEE
Confidence 567889999999998753 3466655444455543 23 566666643 688999999999999999875 32
Q ss_pred cccCCCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 282 EENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 282 ~~~~~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
.+. ...++||+|++++||.|+|+|+.+++.|++++|+.
T Consensus 480 ~~~-~~~~~Ys~l~~~~dG~i~ilYE~~~~~I~f~~~~l 517 (523)
T 4fj6_A 480 LDE-AEGWGYSCLSMIDKETVGIFYESSVAHMTFQAVKL 517 (523)
T ss_dssp EEC-SCCCCCEEEEECSSSEEEEEECCSSCSEEEEEEEH
T ss_pred EcC-CCCcccceEEEcCCCEEEEEEEcCCCcEEEEEeeH
Confidence 221 23579999999999999999999999999999863
|
| >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=283.41 Aligned_cols=305 Identities=17% Similarity=0.276 Sum_probs=222.2
Q ss_pred eeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCC----CCCCCcEEEEEEeCC-C-CcCCcEEccCCCC-CCCCC
Q 020796 11 VAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSC----EGAPDVKIWLQTFKD-G-RWQSPIIADEEPN-VPMWN 83 (321)
Q Consensus 11 ~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~----~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~-~~~~~ 83 (321)
.++..||+++...+.++|+|+|+.+++|+|+++|.+... .+.+++.|+++||.| | ||++++.+...+. ....+
T Consensus 7 ~~~~~~f~~g~~~~~~~riP~l~~~~~G~lla~~~~r~~~~~d~~~~~~~i~~~rS~DgG~TWs~~~~v~~~~~~~~~~d 86 (449)
T 2bf6_A 7 TEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDYPDKSSVID 86 (449)
T ss_dssp CCCEEEECTTGGGCSEEEEEEEEECTTSCEEEEEEEETTSSCCTTSSCEEEEEEEESSTTSSCCCCEEEECCSTTCEEEE
T ss_pred CCceEEEcCCCCCCceEEcceEEECCCCCEEEEEeCccCccccCCCCcceEEEEEcCCCCCCCCCCEEeecCCCcccccc
Confidence 356789999987889999999999999999999865432 112346799999987 5 9999998876655 45677
Q ss_pred eEEEEeC-CCcEEEEEEecccc----------------------------------------------------------
Q 020796 84 PVLFKLP-SNGLLLFYKIGQEV---------------------------------------------------------- 104 (321)
Q Consensus 84 p~l~~~~-~G~l~l~~~~~~~~---------------------------------------------------------- 104 (321)
|+++.++ +|+|+|+|......
T Consensus 87 p~l~~d~~~G~i~l~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (449)
T 2bf6_A 87 TTLIQDDETGRIFLLVTHFPSKYGFWNAGLGSGFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDSNKTEYTTNALGDLFK 166 (449)
T ss_dssp EEEEECTTTCCEEEEEEEECTTCCTTTCCSSCSEEEETTEEEEEEECTTCCEEEEETTEEECTTSCEEEEEECTTCEEEE
T ss_pred ceeEEECCCCeEEEEEeccccccccccccccccccccccceeeeeecccCcceeeecceeecCcCccceeeecccccccc
Confidence 8988875 89999998641100
Q ss_pred ------------------CCceeEEEEecCCCCCCCCCccCCCCC-------CCCCCCccEEccC----CeEEEeeeccc
Q 020796 105 ------------------QKWSGCMKRSYNKGVTWSEREQLPPGI-------LGPSKNKPILLEN----GLLLCGSSVES 155 (321)
Q Consensus 105 ------------------~~~~~~~~~S~D~G~TWs~~~~l~~~~-------~g~~~~~~~~~~~----G~~~~~~~~~~ 155 (321)
.....++.+|+|+|+||++|..+.... .++..+..+++.+ |+|+++.+.+.
T Consensus 167 ~g~~~~ni~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~~~g~Gi~l~~g~~~Grlv~p~~~~~ 246 (449)
T 2bf6_A 167 NGTKIDNINSSTAPLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRIVVPVYYTN 246 (449)
T ss_dssp TTEEEEETTSSSCSSEECSSCEEEEEEESSTTSSCCCCEECHHHHCCTTCSCEEECSEECEECCSSTTTTCEEEEEEEEC
T ss_pred CcccccceecccCccccccccEEEEEEEcCCCccCCCCccCccccccccceeecccCCeEEEeccCCcCCEEEEEEEEEc
Confidence 011235789999999999988765321 1222334567775 89998876543
Q ss_pred CCC-CcEEEEEECCCCceeEEeeceecC-----C----------CCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEe
Q 020796 156 WNS-WGSWMEVTVDAGRSWRKYGPIYIP-----N----------ESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSES 219 (321)
Q Consensus 156 ~~~-~~~~~~~S~D~G~tW~~~~~~~~~-----~----------~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S 219 (321)
..+ ....+++|+|+|+||+....+... + ...++.||.++++++|+|++++|... +.+.+++|
T Consensus 247 ~~g~~~~~v~~S~D~G~tW~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~e~~vve~~dG~l~~~~R~~~--g~~~v~~S 324 (449)
T 2bf6_A 247 EKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRNLS--GYLNIATS 324 (449)
T ss_dssp TTCCEEEEEEEESSTTSSCEECCCTTTTEECTTSCEECTTTCCCSTTCEEEEEEEECTTSCEEEEEEESS--SEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCceeECCccCcccccccccccccccccccCCCCCCCEEEEecCCEEEEEEEeCC--CCEEEEEE
Confidence 222 357899999999999986532111 0 01357789999999999999999874 56788999
Q ss_pred ccCCcCCCCCcc--CCCCCCCCceeEEE---cCCCcEEEEE-eCC--CCCeEEEEE-------EcCCCC-----CCCcce
Q 020796 220 CDGGLTWSYAKP--TQLLNPNSGIDGVK---LKDGRLLLAY-NTV--SRGVLKVAL-------SKDDGD-----SWHDAL 279 (321)
Q Consensus 220 ~D~G~tWs~~~~--~~~~~~~~~~~~~~---~~~g~~~lv~-~~~--~r~~l~~~~-------S~D~G~-----tW~~~~ 279 (321)
.|+|+||+++.. ..++.+.+...+++ +.+|+.+|++ ++. .|..+.+.+ |.|+|+ +|..+.
T Consensus 325 ~D~G~TWs~~~~~~~~l~~~~~~~~~i~~~~~~dg~~~ll~~~p~~~~R~~g~l~l~~s~~~gS~D~G~~~~~~tW~~~~ 404 (449)
T 2bf6_A 325 FDGGATWDETVEKDTNVLEPYCQLSVINYSQKVDGKDAVIFSNPNARSRSNGTVRIGLINQVGTYENGEPKYEFDWKYNK 404 (449)
T ss_dssp SSTTSCCCSCCEEEEEEECCSSCCEEEECSSCBTTBCEEEEEEECSSSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCccccCccccccccCCCCcCccEEEeecccCCceEEEEeCCCCCCCCceEEEEEEecCCccccCCccccccCcccce
Confidence 999999998753 33555544444444 3578755544 433 454555555 689999 999888
Q ss_pred eecccCCCceeceEEEEccCCeEEEEEEeCC-CeeEEEEeCC
Q 020796 280 TLEENLAMEFSYPAVIQASDGSVHITYTYNR-TQIKHVVLLP 320 (321)
Q Consensus 280 ~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~~-~~i~~~~~~~ 320 (321)
.+..+ .++||.+++++||.|+|+|+.++ +.|++++|++
T Consensus 405 ~l~~~---~~~Ys~l~~~~dg~i~~lYe~~~~~~I~~~~~~~ 443 (449)
T 2bf6_A 405 LVKPG---YYAYSCLTELSNGNIGLLYEGTPSEEMSYIEMNL 443 (449)
T ss_dssp EEEEE---ECCCEEEEECTTSCEEEEECSSSSSCEEEEEECH
T ss_pred EeCCC---CccCCeeEEcCCCEEEEEEEcCCCCeEEEEEECH
Confidence 77653 57999999999999999999875 8899999974
|
| >2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=282.08 Aligned_cols=306 Identities=18% Similarity=0.279 Sum_probs=216.7
Q ss_pred eeeeeEEecCCCC------CCCccccceEEEecCCcEEEEEecCC--CCCCCCcEEEEEEeCC-C-CcCCcEEccCC---
Q 020796 10 LVAEEFTFPANSA------PFKSCHASTIVEVDKGHFLVAYFGGS--CEGAPDVKIWLQTFKD-G-RWQSPIIADEE--- 76 (321)
Q Consensus 10 ~~~~~~~f~~~~~------~~~~~~~p~l~~~~~g~l~~~~~~~~--~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~--- 76 (321)
+..++.||.++.. ++..+|+|+|+.+++|+||++|.+.. .+..+++.|+++||.| | ||++++.+...
T Consensus 3 ~~~~~~~f~~g~~~~~~~~g~~~~riP~l~~~~~G~lla~~~~r~~~~~d~~~i~i~~rrs~d~G~tW~~~~~i~~~~~~ 82 (471)
T 2w20_A 3 LTEKTDIFESGRNGKPNKDGIKSYRIPALLKTDKGTLIAGADERRLHSSDWGDIGMVIRRSEDNGKTWGDRVTITNLRDN 82 (471)
T ss_dssp BCCCEEEECCCBTTCCCTTSCCEEEEEEEEECTTSCEEEEEEEESSCSSSSSSEEEEEEEESSTTSSCCCCEEEECCCCC
T ss_pred cccceeeeeCCCCCccCCCCceeeecceEEECCCCcEEEEECCeecCCCCcccccEEEEECCCCCCcCCCCEEeecCccC
Confidence 4578999999853 57899999999999999999986642 2334567789999987 5 99999987642
Q ss_pred CCCC--------CCCeEEEEeC-CCcEEEEEEecccc-------------------------------------------
Q 020796 77 PNVP--------MWNPVLFKLP-SNGLLLFYKIGQEV------------------------------------------- 104 (321)
Q Consensus 77 ~~~~--------~~~p~l~~~~-~G~l~l~~~~~~~~------------------------------------------- 104 (321)
+... ..+|+++.++ +|+|+|++......
T Consensus 83 ~~~~~~~~~~~~~~d~~~v~D~~tg~i~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 162 (471)
T 2w20_A 83 PKASDPSIGSPVNIDMVLVQDPETKRIFSIYDMFPEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIRENGTVY 162 (471)
T ss_dssp TTCSCGGGCSCEEEEEEEEECTTTCCEEEEEEEECSSSGGGGSCSSCCCCEEEETTEEEEEEEETTCCSCEEECGGGEEE
T ss_pred cccccccCCCcccccceEEEeCCCCeEEEEEecccCcccccccccccCccceeecccceeeeeccccCceeeeccCceee
Confidence 2211 1245777776 79999987531000
Q ss_pred -------------------------------------------------CCceeEEEEecCCCCCCCCCccCCCCC----
Q 020796 105 -------------------------------------------------QKWSGCMKRSYNKGVTWSEREQLPPGI---- 131 (321)
Q Consensus 105 -------------------------------------------------~~~~~~~~~S~D~G~TWs~~~~l~~~~---- 131 (321)
.....++.+|+|+|+||++|..|.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gni~~~~~~~~~~~~~~t~~~~~~~S~D~G~TWs~p~~l~~~~~~~~ 242 (471)
T 2w20_A 163 TPDGKATDYRVVVDPVKPAYSDKGDLYKGNQLLGNIYFTTNKTSPFRIAKDSYLWMSYSDDDGKTWSAPQDITPMVKADW 242 (471)
T ss_dssp CTTSCEEEEEECSSCCSGGGTTTTEEEETTEEEEETTCCSSCSSSEECCSSCEEEEEEESSTTSSCCCCEECHHHHCCTT
T ss_pred cCCCCceeeEeeccccccccccccceecCCcccceeeeecccCCcceecCCceEEEEEECCCcCcCCCCcccCccccccc
Confidence 000134789999999999998775421
Q ss_pred CCC---CCCccEEccC----CeEEEeeecccC-----CCCcEEEEEECCCCceeEEeeceecC----C----------CC
Q 020796 132 LGP---SKNKPILLEN----GLLLCGSSVESW-----NSWGSWMEVTVDAGRSWRKYGPIYIP----N----------ES 185 (321)
Q Consensus 132 ~g~---~~~~~~~~~~----G~~~~~~~~~~~-----~~~~~~~~~S~D~G~tW~~~~~~~~~----~----------~~ 185 (321)
... ..+..+++.+ |+|+++.+.... ......+++|+|+|+||+....+... + ..
T Consensus 243 ~~f~~~gpg~gI~l~d~~~~GrLv~p~~~~~~~~~~~g~~~~~v~~SdD~G~TW~~~~~v~~~~~~~g~~~~~~~~~~~~ 322 (471)
T 2w20_A 243 MKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVSHLNGSQSSRIIYSDDHGKTWHAGEAVNDNRQVDGQKIHSSTMNNRR 322 (471)
T ss_dssp CSCEEECCEECEECCSSTTTTCEEEEEEECCTTTHHHHCCEEEEEEESSTTSSCEECCCTTTTEEETTEEECTTTCCCGG
T ss_pred ccccccCCcceEEecCCCcCCeEEEEEEEeccccCCCCcEEEEEEEECCCCCCcccCCccCcccccCccccccccccccC
Confidence 111 1223578877 999998765321 12357899999999999987644211 0 00
Q ss_pred cceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC--CCCCCCCc-eeEEEcCCCcEEEEEe-CC--C
Q 020796 186 LSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT--QLLNPNSG-IDGVKLKDGRLLLAYN-TV--S 259 (321)
Q Consensus 186 ~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~--~~~~~~~~-~~~~~~~~g~~~lv~~-~~--~ 259 (321)
.++.||.++++++|+|++++|... +.+++++|.|+|+||+++... .++.+... ..+..+.+|+.+|++. +. .
T Consensus 323 ~~~~ep~vve~~dG~L~~~~R~~~--G~~~v~~S~DgG~TWs~~~~~~~~l~~~~~~~s~i~~~~dG~~vll~s~p~~~~ 400 (471)
T 2w20_A 323 AQNTESTVVQLNNGDVKLFMRGLT--GDLQVATSKDGGVTWEKDIKRYPQVKDVYVQMSAIHTMHEGKEYIILSNAGGPK 400 (471)
T ss_dssp GCCCSEEEEECTTSCEEEEECCSS--SEEEEEEESSSSSSCCSCCEEEEEEECCSSCCEEEEEEETTEEEEEEEEECSSS
T ss_pred cCccCCEEEEcCCCeEEEEEEeCC--CCEEEEEEcCCCcCCCCcccccCccCCcccccceEEEccCCCEEEEEecCCCCC
Confidence 246789999999999999998763 567889999999999987532 23333222 2223456888767654 32 3
Q ss_pred CCeEEEE---EEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEEeC-----CCeeEEEEeCC
Q 020796 260 RGVLKVA---LSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN-----RTQIKHVVLLP 320 (321)
Q Consensus 260 r~~l~~~---~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~-----~~~i~~~~~~~ 320 (321)
|..+.++ +|.|+|+||....++..+ .++||.|++++||.|+|+|+.+ +..|++++|++
T Consensus 401 r~~~~l~l~~~S~D~G~tW~~~~~i~~~---~~~Ys~l~~~~dG~l~llye~~~~~~~~~~I~~~r~~~ 466 (471)
T 2w20_A 401 RENGMVHLARVEENGELTWLKHNPIQKG---EFAYNSLQELGNGEYGILYEHTEKGQNAYTLSFRKFNW 466 (471)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEEEEE---ECCCEEEEEEETTEEEEEEEECCTTBCSCEEEEEEEEH
T ss_pred CccceEEEEEEcCCCCcccccCCEECCC---CccceeeEEcCCCEEEEEEEeCCCCCCcceEEEEEcCH
Confidence 4444443 488999999998877653 5799999999999999999986 57899999986
|
| >2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=260.28 Aligned_cols=297 Identities=16% Similarity=0.154 Sum_probs=218.6
Q ss_pred eeeeeeeeEEecCCCC----------CCCccccceEEEecCCcEEEEEecCCC--CCCCCcEEEEEEeC---C-C----C
Q 020796 7 IKGLVAEEFTFPANSA----------PFKSCHASTIVEVDKGHFLVAYFGGSC--EGAPDVKIWLQTFK---D-G----R 66 (321)
Q Consensus 7 ~~~~~~~~~~f~~~~~----------~~~~~~~p~l~~~~~g~l~~~~~~~~~--~g~~~~~i~~s~s~---~-G----t 66 (321)
..-...|+.||+++.. .+.++++|+|+.+++|+|+|+|.+... ...+.+.|++++|. | | |
T Consensus 8 ~~p~~~~~~lf~~~~~~~~~~~~~~~~~~s~r~PsLv~~~~G~l~A~~e~~~~~~~d~g~~~i~~~rS~~~~D~G~~~~t 87 (386)
T 2xzi_A 8 AAPYHDEFPLFRSANMASPDKLSTGIGFHSFRIPAVVRTTTGRILAFAEGRRHTNQDFGDINLVYKRTKTTANNGASPSD 87 (386)
T ss_dssp SCCCEEEEEEECCTTSSSCCBCTTSCBCSEEEEEEEEECTTSCEEEEEEEESSSSCSSSSEEEEEEEBSSSSSTTCSGGG
T ss_pred cCCCcceEEEEeCCccccccccccCCceEEEEeeEEEEeCCCcEEEEEEeeeCCCCCCCceeEEEEEeeeecCCCcCcee
Confidence 3445789999999866 689999999999999999998855322 11245678888887 6 5 8
Q ss_pred cCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccc-----c------------------CCceeEEEEecCCCCCCCC
Q 020796 67 WQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQE-----V------------------QKWSGCMKRSYNKGVTWSE 123 (321)
Q Consensus 67 Ws~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~-----~------------------~~~~~~~~~S~D~G~TWs~ 123 (321)
|++++.+...+.....+|+++.+++|+|+|++..... . ..+...+.+|+|+|+||++
T Consensus 88 W~~~~~l~~~~~~~~~~Pt~v~~~~g~I~l~~~~~~g~y~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~S~D~G~TWs~ 167 (386)
T 2xzi_A 88 WEPLREVVGSGAGTWGNPTPVVDDDNTIYLFLSWNGATYSQNGKDVLPDGTVTKKIDSTWEGRRHLYLTESRDDGNTWSK 167 (386)
T ss_dssp BCCCEEEECCSSSEEEEEEEEECTTSCEEEEEEEECTTEESSSCCBCTTSCBCEECCSSTTTSCEEEEEEESSTTSCCCC
T ss_pred ccCcEEEeeCCCCcccccEEEEeCCCCEEEEEEeccccccccCcceeccCceecccccccccccEEEEEEECCCCccCCC
Confidence 9999988765555667899988778999999853110 0 1234568899999999999
Q ss_pred CccCCCCC-------CCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECC--CCceeEEeeceecCCCCcceeeeeEE
Q 020796 124 REQLPPGI-------LGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVD--AGRSWRKYGPIYIPNESLSVIQPVPF 194 (321)
Q Consensus 124 ~~~l~~~~-------~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D--~G~tW~~~~~~~~~~~~~~~~~~~~~ 194 (321)
+..+.... .....+..+++.+|+|+++.+ ..+++|+| +|+||+....+ +. ..++.++
T Consensus 168 p~~l~~~~~~~~~~~~~~~~g~gI~l~dGrLv~p~~--------~~~~~S~D~~~G~tW~~~~~~--~~----~~e~~vv 233 (386)
T 2xzi_A 168 PVDLTKELTPDGWAWDAVGPGNGIRLTTGELVIPAM--------GRNIIGRGAPGNRTWSVQRLS--GA----GAEGTIV 233 (386)
T ss_dssp CEECHHHHSCTTCCSCCBCSSCCEECTTSCEEEEET--------TEEEEEESSTTSCEEEEEECT--TC----CSSEEEE
T ss_pred cccCccccccccceeeccCCccEEEecCCEEEEEeE--------EEEEEccCCCCCCcccccCcC--CC----CCcCEEE
Confidence 87764211 001123468889999998864 56888999 99999986533 21 2477899
Q ss_pred EcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCcc-CCCCCCCCceeEEEc-CCCcEEEEE-eCC---CCCeEEEEEE
Q 020796 195 HTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP-TQLLNPNSGIDGVKL-KDGRLLLAY-NTV---SRGVLKVALS 268 (321)
Q Consensus 195 ~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~-~~~~~~~~~~~~~~~-~~g~~~lv~-~~~---~r~~l~~~~S 268 (321)
++++|+|++++|...+ +...+++|.| +||+++.. ..++.+.....++++ .+++.+|++ ++. .|..+.+++|
T Consensus 234 e~~dG~L~~~~r~~~g-~~r~v~~S~D--~tWt~~~~~~~l~~~~~~~~~i~~~~~~~~~ll~~~p~~~~~R~~l~l~~S 310 (386)
T 2xzi_A 234 QTPDGKLYRNDRPSQK-GYRMVARGTL--EGFGAFAPDAGLPDPACQGSVLRYNSDAPARTIFLNSASGTSRRAMRVRIS 310 (386)
T ss_dssp ECTTSCEEEEECCSSS-EEEEEEEEET--TEECCCEEEEEEEECSCCCEEEEEESSSSCEEEEEEECSSSCSCCEEEEEE
T ss_pred EeCCCcEEEEEeCCCC-ccEEEEEEeC--CccCcccccCCCCCCCCccEEEEecCCCCCEEEEECCCCCCCCcceEEEEE
Confidence 9999999999988652 2567889999 99999873 234443333334433 244444444 432 5778999999
Q ss_pred cCC-CCCCCcceeecccCC----CceeceEEEEccCCeEEEEEEeC----------CCeeEEEEeCC
Q 020796 269 KDD-GDSWHDALTLEENLA----MEFSYPAVIQASDGSVHITYTYN----------RTQIKHVVLLP 320 (321)
Q Consensus 269 ~D~-G~tW~~~~~l~~~~~----~~~~yp~~~~~~dg~l~v~y~~~----------~~~i~~~~~~~ 320 (321)
.|+ |+||+..+++..++. .+++||.|++..||.|+|+|+.+ ++.|++++|++
T Consensus 311 ~D~~G~tW~~~~~~~~g~~~~~~~~~~ys~l~~~~dg~l~~lye~~~~~~~~~~~~~~~I~~~~~~~ 377 (386)
T 2xzi_A 311 YDADAKKFNYGRKLEDAKVSGAGHEGGYSSMTKTGDYKIGALVESDFFNDGTGKNSYRAIIWRRFNL 377 (386)
T ss_dssp CSTTCCCCCCCEEGGGGCCSSSCEEEEEEEEEECTTSCEEEEEEEECCTTTTSTTCCEEEEEEEECH
T ss_pred cCCCCCccCCceEEecCCccccCCceEeceeEECCCCEEEEEEECCCccccccCCCcceEEEEEEeH
Confidence 999 999999998887652 24899999999999999999987 67899999975
|
| >2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=272.10 Aligned_cols=297 Identities=18% Similarity=0.308 Sum_probs=210.9
Q ss_pred eEEecCCC-CCCCccccceEEEecCCcEEEEEec---CCCCCCCCcEEEEEEeCC-C-CcCCcEEccCC----------C
Q 020796 14 EFTFPANS-APFKSCHASTIVEVDKGHFLVAYFG---GSCEGAPDVKIWLQTFKD-G-RWQSPIIADEE----------P 77 (321)
Q Consensus 14 ~~~f~~~~-~~~~~~~~p~l~~~~~g~l~~~~~~---~~~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~----------~ 77 (321)
+.||+++. ..+.++|+|+|+.+++|+|+|+|-+ +.....+++.|+++||.| | ||++++.+... |
T Consensus 219 ~~lf~~g~~~~~~~yRIPaL~~t~~GtLlA~~d~R~~~~~D~~~~i~iv~rRS~DgG~TWs~~~~i~~~~~~~~~~~~~p 298 (686)
T 2jkb_A 219 QLIFQSGDSTQANYFRIPTLYTLSSGRVLSSIDARYGGTHDSKSKINIATSYSDDNGKTWSEPIFAMKFNDYEEQLVYWP 298 (686)
T ss_dssp BCSSCTTSTTCCSEEECCCCEECTTSCEEEEEEEESSTTCCSSSCEEEEEEEESSTTSSCCCCEEEECCCSBCCCCCCCC
T ss_pred hhhccCCCcCCceeEeeeEEEECCCCcEEEEEecccCCCCcCCCCeEEEEEEcCCCCCcCCCCEEcccCCcccccccccc
Confidence 37888885 4778899999999999999998733 222223578899999987 5 99999977321 1
Q ss_pred ------------CCCCCCeEEEEeC-CCcEEEEEEecccc----------------------------------------
Q 020796 78 ------------NVPMWNPVLFKLP-SNGLLLFYKIGQEV---------------------------------------- 104 (321)
Q Consensus 78 ------------~~~~~~p~l~~~~-~G~l~l~~~~~~~~---------------------------------------- 104 (321)
.....+|+++.++ +|+|+|++......
T Consensus 299 ~d~~~~~~~~~~~~~~~dp~~v~D~~tg~i~l~~~~~~~g~g~~~~~~~~~gy~~~~g~~~~~l~~~~~~~~~~~~~~~G 378 (686)
T 2jkb_A 299 RDNKLKNSQISGSASFIDSSIVEDKKSGKTILLADVMPAGIGNNNANKADSGFKEINGHYYLKLKKNGDNDFRYTVRENG 378 (686)
T ss_dssp CSTTTTTCCCCSCCEEEEEEEEECTTTCCEEEEEEEECTTCCTTTSCTTCCSEEESSSSEEEEEEETTCSSCCEEECGGG
T ss_pred ccccccccccccCcccccceEEEeCCCCeEEEEEEecccccCccccccccccccccCCceeeeeecccccccceeeccCc
Confidence 1223579999885 79999998631100
Q ss_pred -----------------------------------------------------------------CCceeEEEEecCCCC
Q 020796 105 -----------------------------------------------------------------QKWSGCMKRSYNKGV 119 (321)
Q Consensus 105 -----------------------------------------------------------------~~~~~~~~~S~D~G~ 119 (321)
.....++.+|+|+|+
T Consensus 379 ~v~~~~~~~~t~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~v~rS~DgG~ 458 (686)
T 2jkb_A 379 VVYNETTNKPTNYTINDKYEVLEGGKSLTVEQYSVDFDSGSLRERHNGKQVPMNVFYKDSLFKVTPTNYIAMTTSQNRGE 458 (686)
T ss_dssp EEEETTTTEEEEEEECTTSBEEETTEECEEEEEEEECTTSSCEEEEEEEEEECBTTSTTCSEECCSSCEEEEEEESSTTS
T ss_pred eeeccccCccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccCccEEEEEEECCCCC
Confidence 001135789999999
Q ss_pred CCCCCccCCCCCCCCC-------CCccEE-ccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeee
Q 020796 120 TWSEREQLPPGILGPS-------KNKPIL-LENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQP 191 (321)
Q Consensus 120 TWs~~~~l~~~~~g~~-------~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~ 191 (321)
||++|..+++ ..+.. .+..++ +.+|+|+++.+.. ....+++|+|+|+||+....+ .++ ..++.++
T Consensus 459 TWs~p~~l~~-~~~~~~~~~~~~pg~GI~~~~~GrLv~p~~~~----~~s~v~~S~DgG~TW~~~~~~-~p~-~~~~~e~ 531 (686)
T 2jkb_A 459 SWEQFKLLPP-FLGEKHNGTYLCPGQGLALKSSNRLIFATYTS----GELTYLISDDSGQTWKKSSAS-IPF-KNATAEA 531 (686)
T ss_dssp CCCCCEECCC-SSCTTSCCCEECSEECEECTTSSCEEEEEEET----TEEEEEEESSTTSSCEEEEEE-CSC-SSCCCCE
T ss_pred cCCCCeeccc-ccCcccceeeeCCCcceEEccCCeEEEEEecC----CcEEEEEECCCCCeeEeCccc-CCC-CCCceee
Confidence 9999987753 21111 112344 4689999987643 356789999999999987633 222 2356688
Q ss_pred eEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCC-CCCCCCce--e---EEEcCCCcEEEEEe-CC---CCC
Q 020796 192 VPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQ-LLNPNSGI--D---GVKLKDGRLLLAYN-TV---SRG 261 (321)
Q Consensus 192 ~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~-~~~~~~~~--~---~~~~~~g~~~lv~~-~~---~r~ 261 (321)
.++++++|+|++++|... +.+++++|.|+|+||+++.... ++.+..++ . ...+.+|+++|++. +. .|.
T Consensus 532 ~ivel~dG~L~~~~R~~~--G~~~v~~S~DgG~TWs~~~~~~~L~~p~~g~~~sii~~~~l~dG~~~ll~s~p~~~~~R~ 609 (686)
T 2jkb_A 532 QMVELRDGVIRTFFRTTT--GKIAYMTSRDSGETWSKVSYIDGIQQTSYGTQVSAIKYSQLIDGKEAVILSTPNSRSGRK 609 (686)
T ss_dssp EEEEEETTEEEEEECCSS--SSCEEEEESSTTSSCCCCEECSSCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCSSSSB
T ss_pred EEEEecCCEEEEEEEcCC--CcEeEEEeCCCCCCCccccccccCcCCCCceeEEEEEeeecCCCCEEEEEECCCCCCcce
Confidence 899899999999998864 4556789999999999987543 44442221 1 23457899888883 22 354
Q ss_pred eEEEEE----EcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEEEeC----------CCeeEEEEeCC
Q 020796 262 VLKVAL----SKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN----------RTQIKHVVLLP 320 (321)
Q Consensus 262 ~l~~~~----S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~----------~~~i~~~~~~~ 320 (321)
.+.+++ |.|+|+||+.+..+... ...++||.+++.+||.|+|+|+.. |+.|++++|++
T Consensus 610 ~~~l~~S~~~S~D~G~TW~~~~~i~~~-~~~~~Ys~l~~~~DG~i~ilye~g~tW~~~~~~~~~~I~~~rf~~ 681 (686)
T 2jkb_A 610 GGQLVVGLVNKEDDSIDWKYHYDIDLP-SYGYAYSAITELPNHHIGVLFEKYDSWSRNELHLSNVVQYIDLEI 681 (686)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEESSCT-TSBCCSEEEEECTTSCEEEEEECSCSSCTTSCSCSSCEEEEEECH
T ss_pred eeEEEEEEEeccCCCCcccCCeeecCC-CCCccccEEEEeCcCEEEEEEeCCCcccccccccCCceEEEEECH
Confidence 445543 46899999998877643 235789999999999999999873 35899999986
|
| >1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=280.27 Aligned_cols=174 Identities=20% Similarity=0.253 Sum_probs=134.2
Q ss_pred CCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCC--------CCcceeeeeEEEcCCCeEEEEEeecCC-----
Q 020796 144 NGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPN--------ESLSVIQPVPFHTANRTLRVLMRSFNG----- 210 (321)
Q Consensus 144 ~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~--------~~~~~~~~~~~~~~~G~l~~~~r~~~~----- 210 (321)
+|+|+++++.+........+++|+|+|+||+....+..+. ...+++|+.+++++||+|++++|....
T Consensus 565 dGRLV~P~~~~~~~~~~s~~~ySdD~GkTW~~g~~i~~~~~~~~~~~~~~~~~~E~~ivEl~DG~Ll~~~R~~~~~~~~g 644 (781)
T 1w0p_A 565 NGRLIYPAIVLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNG 644 (781)
T ss_dssp TTCEEEEEEEESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETT
T ss_pred CCeEEEEEEEeCCCCcEEEEEEECCCCCccccccccCccccccccccccCCCccCCEEEEecCCEEEEEEecCccccccc
Confidence 7999888766432223577899999999999876543211 013578999999999999999998631
Q ss_pred --CCcEEEEEeccCCcCCCCCccC------CCCCCCCceeEEEc--CCCcEEEEE-eC-------CCCCeEEEEEEcCCC
Q 020796 211 --IGRVCMSESCDGGLTWSYAKPT------QLLNPNSGIDGVKL--KDGRLLLAY-NT-------VSRGVLKVALSKDDG 272 (321)
Q Consensus 211 --~~~~~~~~S~D~G~tWs~~~~~------~~~~~~~~~~~~~~--~~g~~~lv~-~~-------~~r~~l~~~~S~D~G 272 (321)
.+...+++|.|+|+||+++... .++.+.....++++ .+|+.+|++ ++ ..|.+|.+++|.|+|
T Consensus 645 ~~~g~r~va~S~DgG~TWs~~~~~~~~~~p~Lp~p~~~~Sii~~~~~dG~~~Llfsnp~~~~a~~~~R~~L~l~~S~DdG 724 (781)
T 1w0p_A 645 VNYSPRQQFLSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEG 724 (781)
T ss_dssp EECCSEEEEEESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTT
T ss_pred cCcccEEEEEECCCCcCCCCceeccccccccCCCCCccceEEEeccCCCCEEEEEECCcccccCCCCcCCEEEEEECCCC
Confidence 1346778999999999998653 35555444555554 367666766 33 258899999999999
Q ss_pred CCCCcceeecccCCCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 273 DSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 273 ~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
+||..+..|..+ .++||.+++++||.|+|+|+.+++.|++++|.+
T Consensus 725 ~TW~~~~~L~~g---~~gYs~l~~l~DG~i~llYE~~~~~I~f~r~~l 769 (781)
T 1w0p_A 725 VTWKGPIQLVNG---ASAYSDIYQLDSENAIVIVETDNSNMRILRMPI 769 (781)
T ss_dssp SCCEEEEECCSS---BCCSEEEEECSSSEEEEEEECGGGCEEEEEEEH
T ss_pred CCCCCCeEeCCC---CCCCCceEEeCCCEEEEEEEcCCCeEEEEEEcH
Confidence 999999888864 579999999999999999999999999999964
|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=271.50 Aligned_cols=302 Identities=19% Similarity=0.255 Sum_probs=218.1
Q ss_pred eeeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCC--CCCcEEEEEEeCC-C-CcCCcEEccCC----CCCCC
Q 020796 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEG--APDVKIWLQTFKD-G-RWQSPIIADEE----PNVPM 81 (321)
Q Consensus 10 ~~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g--~~~~~i~~s~s~~-G-tWs~~~~~~~~----~~~~~ 81 (321)
+++++.||.++..++.++|+|+|+.+++|+|+++|.+...+. ..++.|++++|.| | ||++++.+... +....
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~P~L~~~~~G~lla~~~~~~~~~~~~~~~~i~~~rS~DgG~TW~~~~~l~~~~~~~~~~~~ 83 (601)
T 1w8o_A 4 LYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKGF 83 (601)
T ss_dssp CEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSCBEE
T ss_pred ceeeEeeeecCCCCcceEeEeeEEECCCCCEEEEEcccCCCCCCCCcceEEEEEeCCCCCCCCCCEEEecCccCCCCCcc
Confidence 468999999987788999999999999999999997754421 2345678888876 5 99999987643 22345
Q ss_pred CCeEEEEeC-CCcEEEEEEeccc-------c-------CCceeEEEEecCCCCCCCCCccCCCCC--CC---C--CCCcc
Q 020796 82 WNPVLFKLP-SNGLLLFYKIGQE-------V-------QKWSGCMKRSYNKGVTWSEREQLPPGI--LG---P--SKNKP 139 (321)
Q Consensus 82 ~~p~l~~~~-~G~l~l~~~~~~~-------~-------~~~~~~~~~S~D~G~TWs~~~~l~~~~--~g---~--~~~~~ 139 (321)
.+|+++.++ +|+|+|+|..... . ..+...+.+|+|+|+||+++..+.... .+ . ..+..
T Consensus 84 ~~P~~~~d~~~g~i~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~g 163 (601)
T 1w8o_A 84 SDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEG 163 (601)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECSEEC
T ss_pred ccceEEEECCCCeEEEEEEeecCCCccccccCCCccCCceEEEEEEEecCCCCCCCCcccccccccCCCeeEEEecCCeE
Confidence 679888774 8999999874211 0 113457899999999999987553211 01 0 01234
Q ss_pred EEccC----CeEEEeeeccc-CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcE
Q 020796 140 ILLEN----GLLLCGSSVES-WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRV 214 (321)
Q Consensus 140 ~~~~~----G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~ 214 (321)
+++.+ |+++++..... .......+++|+|+|+||+....+. .++.++.++++++|+|++++|.....+.+
T Consensus 164 i~~~~~~~~G~l~~~~~~~~g~~~~~~~~~~S~D~G~TW~~~~~~~-----~~~~~~~v~~~~dG~l~~~~r~~~~~~~~ 238 (601)
T 1w8o_A 164 IQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAVG-----VGMDENKTVELSDGRVLLNSRDSARSGYR 238 (601)
T ss_dssp EECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCBC-----SSCCSEEEEECTTSCEEEEECCTTCCSEE
T ss_pred EEccCCCcCceEEEEEEEcCCCCceeEEEEEECCCCcCccCCCCCC-----CCCCcCEEEEeCCCEEEEEEeCCCCCCCE
Confidence 66665 89887643211 1113568899999999999876432 14567888999999999988875434567
Q ss_pred EEEEeccCCcCCCCCcc-CCCCCCCCceeEEEc--------CCCcEEEEEeC---CCCCeEEEEEEcCCCCCCCcceeec
Q 020796 215 CMSESCDGGLTWSYAKP-TQLLNPNSGIDGVKL--------KDGRLLLAYNT---VSRGVLKVALSKDDGDSWHDALTLE 282 (321)
Q Consensus 215 ~~~~S~D~G~tWs~~~~-~~~~~~~~~~~~~~~--------~~g~~~lv~~~---~~r~~l~~~~S~D~G~tW~~~~~l~ 282 (321)
.+++|.|+|+||+++.. ..++.|.....++++ .++.++++.++ ..|..+.+++|.|+|++|..+..+.
T Consensus 239 ~~~~S~DgG~tW~~~~~~~~l~~p~~~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~R~~~~l~~S~D~G~tW~~~~~l~ 318 (601)
T 1w8o_A 239 KVAVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQ 318 (601)
T ss_dssp EEEEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEE
T ss_pred EEEEEcCCCCCCCCCeecCcCCCCCccceEEEecccccCCCCCCCEEEEECCCCCCcccceEEEEeCCCCCCCCCceEeC
Confidence 88999999999998753 234444333345544 13444444343 2677899999999999999988876
Q ss_pred ccCCCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 283 ENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 283 ~~~~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
.+ .++||.+++++||.|+|+|+.+ ++|++++|..
T Consensus 319 ~~---~~~Y~~l~~~~dg~i~~~ye~~-~~i~~~~~~~ 352 (601)
T 1w8o_A 319 PG---SMSYSTLTALPDGTYGLLYEPG-TGIRYANFNL 352 (601)
T ss_dssp EE---ECCCEEEEECTTSCEEEEECCS-SEEEEEEECH
T ss_pred CC---CCCCCeEEEcCCCeEEEEEecC-CcceEEEecH
Confidence 53 4789999999999999999998 8999999864
|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=261.75 Aligned_cols=301 Identities=19% Similarity=0.268 Sum_probs=212.5
Q ss_pred eeeEEecCCC-CCCCccccceEEEecCCcEEEEEecCCC--CC-CCCcEEEEEEeCC-C-CcCCcEEccCC---------
Q 020796 12 AEEFTFPANS-APFKSCHASTIVEVDKGHFLVAYFGGSC--EG-APDVKIWLQTFKD-G-RWQSPIIADEE--------- 76 (321)
Q Consensus 12 ~~~~~f~~~~-~~~~~~~~p~l~~~~~g~l~~~~~~~~~--~g-~~~~~i~~s~s~~-G-tWs~~~~~~~~--------- 76 (321)
.++.||+++. ..+.++|+|+|+.+++|+|+|+|-+... .. .+++.|.++||.| | ||++++.+...
T Consensus 196 ~~~~~f~~g~~~~~~~~rIP~l~~~~~G~lla~~d~r~~~~~D~~~~~~i~~~rS~D~G~TW~~~~~i~~~~~~~~~~~~ 275 (679)
T 2sli_A 196 YGENIFYAGDVTESNYFRIPSLLTLSTGTVISAADARYGGTHDSKSKINIAFAKSTDGGNTWSEPTLPLKFDDYIAKNID 275 (679)
T ss_dssp CSBCSSCTTSTTCCSEEEEEEEEECTTSCEEEEEEEESSTTCCSSSCEEEEEEEESSTTSSCCCCEEEECCCSBCCCCCC
T ss_pred ccceeEeCCCCCCcceEEeeeEEECCCCCEEEEEecccCCCcccCCCeEEEEEEECCCCcCCCCCEEeeecccccccccc
Confidence 3458899886 4778899999999999999998754321 11 2467789999987 6 99999875311
Q ss_pred -C------------CCCCCCeEEEEe-CCCcEEEEEEecc----------------------------ccC---------
Q 020796 77 -P------------NVPMWNPVLFKL-PSNGLLLFYKIGQ----------------------------EVQ--------- 105 (321)
Q Consensus 77 -~------------~~~~~~p~l~~~-~~G~l~l~~~~~~----------------------------~~~--------- 105 (321)
| ...+.+|+++.+ ..|+|+|++...+ ..+
T Consensus 276 ~p~~~~g~~~~~~~~~~~~Dp~~v~D~~tg~i~l~~~~~~~g~g~~~~~~~~g~~~~~g~~~l~l~~~~~~~~~~~y~~~ 355 (679)
T 2sli_A 276 WPRDSVGKNVQIQGSASYIDPVLLEDKLTKRIFLFADLMPAGIGSSNASVGSGFKEVNGKKYLKLRWHKDAGRAYDYTIR 355 (679)
T ss_dssp CCCSTTGGGCCCSSCCEEEEEEEEEETTTTEEEEEEEEECTTCCGGGCCSSCSEEEETTEEEEEEEETTSCTTCCCEEEC
T ss_pred CccccccccccccCCcccccceEEEECCCCeEEEEEEecccccccccccccccccccccceeeeeeeccccccccceeec
Confidence 1 123457998887 4799999875110 000
Q ss_pred --------------------C-------------------------------------------------ceeEEEEecC
Q 020796 106 --------------------K-------------------------------------------------WSGCMKRSYN 116 (321)
Q Consensus 106 --------------------~-------------------------------------------------~~~~~~~S~D 116 (321)
. ...++.+|+|
T Consensus 356 ~~g~v~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~s~~~~~~t~~i~v~~S~D 435 (679)
T 2sli_A 356 EKGVIYNDATNQPTEFRVDGEYNLYQHDTNLTCKQYDYNFSGNNLIESKTDVDVNMNIFYKNSVFKAFPTNYLAMRYSDD 435 (679)
T ss_dssp GGGEEEETTTTEEEEEEECTTCBEEETTEECEEEEEEEEEETTEEEEEEEEEEEECBTTSTTCSEEECSSCEEEEEEESS
T ss_pred ccceeeccccCccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccCCceEEEEEEeCC
Confidence 0 0124679999
Q ss_pred CCCCCCCCccCCCCCCCCC-------CCccEEccC----CeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCC
Q 020796 117 KGVTWSEREQLPPGILGPS-------KNKPILLEN----GLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNES 185 (321)
Q Consensus 117 ~G~TWs~~~~l~~~~~g~~-------~~~~~~~~~----G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~ 185 (321)
+|+||+++..+.+ ..++. .+..+++.+ |+|+++.+... .....+++|+|+|+||+...... + ..
T Consensus 436 gG~TWs~p~~l~~-~~~~~~~~~~~gpG~gI~l~d~~~~GrLv~p~~~~~--~~~s~i~~SdDgG~TW~~~~~~~-p-~~ 510 (679)
T 2sli_A 436 EGASWSDLDIVSS-FKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKS--SAELGFMYSDDHGDNWTYVEADN-L-TG 510 (679)
T ss_dssp TTSSCCCCEECGG-GCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEES--SCSEEEEEESSTTSSCEEEECCC-C-CS
T ss_pred CCccCCCCcccCc-ccCccccceecCCCceEEecCCCCCCEEEEEEEecC--CCEEEEEEECCCCCceEeCccCC-C-CC
Confidence 9999999987764 21111 123567776 99999876543 24678999999999999876321 1 22
Q ss_pred cceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-CCCCCCCc-----eeEEEcCCCcEEEEEeC--
Q 020796 186 LSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-QLLNPNSG-----IDGVKLKDGRLLLAYNT-- 257 (321)
Q Consensus 186 ~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~~~~~~~~-----~~~~~~~~g~~~lv~~~-- 257 (321)
.++.++.++++++|+|++++|... +.+++++|.|+|+||+++... .++.+... +.+..+.+|+.+|+|..
T Consensus 511 ~~~~e~~vve~~dG~L~~~~R~~~--G~~~v~~S~DgG~TWt~~~~~~~L~~p~~g~~~s~i~~~~~~dGr~vll~~~p~ 588 (679)
T 2sli_A 511 GATAEAQIVEMPDGSLKTYLRTGS--NCIAEVTSIDGGETWSDRVPLQGISTTSYGTQLSVINYSQPIDGKPAIILSSPN 588 (679)
T ss_dssp CCCCCEEEEECTTSCEEEEECCSS--SSCEEEEESSTTSSCCCCEECTTCCCCSSCCCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CCccceEEEEeCCCEEEEEEEeCC--CCEEEEEEcCCCcCCCCCccccCCCCCCCceeEEEEEeeecCCCCEEEEEEcCC
Confidence 467899999999999999998864 456778999999999998754 24443211 12224568988888752
Q ss_pred --CCCC--eEEEEEEcCCC--------CCCCcceeecccCCCceeceEEEEccCCeEEEEEEeC----------CCeeEE
Q 020796 258 --VSRG--VLKVALSKDDG--------DSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYN----------RTQIKH 315 (321)
Q Consensus 258 --~~r~--~l~~~~S~D~G--------~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y~~~----------~~~i~~ 315 (321)
..|. .+.+++|.|+| ++|.....++.+ ...++||.|++++||.|+|+|+.. ++.|++
T Consensus 589 ~~~~R~~~~l~ls~S~D~G~t~~~~~~~tW~~~~~i~~g-~~~~~Ys~L~~~~DG~l~llye~g~tw~r~~~~~~~~I~~ 667 (679)
T 2sli_A 589 ATNGRKNGKIWIGLVNDTGNTGIDKYSVEWKYSYAVDTP-QMGYSYSCLAELPDGQVGLLYEKYDSWSRNELHLKDILKF 667 (679)
T ss_dssp CSSSSBCEEEEEEEEEECSCCGGGSEEEEEEEEEESSCT-TSBCCCEEEEECSSSCEEEEEECSCSSCTTSCSCSSCEEE
T ss_pred CCCceeeEEEEEEEEcCCCccccccccCCcccceeecCC-CCCccCceEEEeCCCEEEEEEECCCcccccccccCceEEE
Confidence 2453 45566777999 889887766644 235789999999999999999863 246999
Q ss_pred EEeCC
Q 020796 316 VVLLP 320 (321)
Q Consensus 316 ~~~~~ 320 (321)
++|++
T Consensus 668 ~~f~l 672 (679)
T 2sli_A 668 EKYSI 672 (679)
T ss_dssp EEECH
T ss_pred EEEcH
Confidence 99975
|
| >1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=253.69 Aligned_cols=298 Identities=15% Similarity=0.222 Sum_probs=204.5
Q ss_pred eeeeeeEEecCCCCCCCccccceEE-EecCCcEEEEEecCCC--CCCCCcEEEEEEeCC--C----CcCCcEEccCC--C
Q 020796 9 GLVAEEFTFPANSAPFKSCHASTIV-EVDKGHFLVAYFGGSC--EGAPDVKIWLQTFKD--G----RWQSPIIADEE--P 77 (321)
Q Consensus 9 ~~~~~~~~f~~~~~~~~~~~~p~l~-~~~~g~l~~~~~~~~~--~g~~~~~i~~s~s~~--G----tWs~~~~~~~~--~ 77 (321)
.+++++-+|+. .+..+++|+|+ ..++|+|++++.+... ...+++ |.+.+|.| . ||++++.+... +
T Consensus 7 ~~f~~~~~~~~---~~~s~riP~Lv~~~~~G~l~a~~e~~~~~~~~~~~~-i~~~rS~D~G~~~~~tW~~~~~~~~~~~~ 82 (382)
T 1so7_A 7 PVLQKESVFQS---GAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAEL-IVLRRGDYDAPTHQVQWQAQEVVAQARLD 82 (382)
T ss_dssp CCSEEEEEEEC---TTCCEEEEEEEEETTTTEEEEEEEECC-------CE-EEEEEEEEEGGGTEEEECCCEECTTSCCT
T ss_pred ceeecCcccCC---CceEEEeCeEEEECCCCeEEEEEccCcCCCCCCCCE-EEEEEeeeCCccccceeCCcEEeccCCCC
Confidence 45666666764 45788999999 8889999988755322 122344 66677764 3 89999988654 3
Q ss_pred CCCCCCeEEEEeC-CCcEEEEEEecccc-----------CCceeEEEEecCCCCCCCCCccCCCCCCCC----------C
Q 020796 78 NVPMWNPVLFKLP-SNGLLLFYKIGQEV-----------QKWSGCMKRSYNKGVTWSEREQLPPGILGP----------S 135 (321)
Q Consensus 78 ~~~~~~p~l~~~~-~G~l~l~~~~~~~~-----------~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~----------~ 135 (321)
.....+|+++.++ +|+|++++...... ......+.+|+|+|+||+++..+.....|. .
T Consensus 83 ~~~~~~P~~v~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~DgG~TW~~~~~l~~~~~g~~~~~~~~~~~~ 162 (382)
T 1so7_A 83 GHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVG 162 (382)
T ss_dssp TEEEEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEEC
T ss_pred CCccccceEEEECCCCcEEEEEEEecCCCccceeecCCCCccEEEEEEEcCCCCcCCCCccCChhhcCCCCCCceeeccC
Confidence 3446789888775 79999998743211 112346889999999999987665321111 1
Q ss_pred CCccEEccC--CeEEEeeecccCC------CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEc---CCCeEEEE
Q 020796 136 KNKPILLEN--GLLLCGSSVESWN------SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHT---ANRTLRVL 204 (321)
Q Consensus 136 ~~~~~~~~~--G~~~~~~~~~~~~------~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~---~~G~l~~~ 204 (321)
.+..+++.+ |+|+++.+..... .....+++|+|+|+||+....+ + .+..++.++++ ++|+|+++
T Consensus 163 pg~gi~l~~~~G~lv~p~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~--~---~~~~~~~~~~~~~~~dg~l~~~ 237 (382)
T 1so7_A 163 PGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFV--A---QDTLECQVAEVETGEQRVVTLN 237 (382)
T ss_dssp SSCCEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCC--S---BSEEEEEEEEEEC--CEEEEEE
T ss_pred CCcEeecccCCCcEEEEEEEecccccccCCCceeEEEEECCCCceeEcCccc--C---CCCCccEEEEEEECCCCEEEEE
Confidence 225678888 9999876654211 2356789999999999987643 2 23445556666 88999999
Q ss_pred EeecCCCCcEEEEEeccCCcCCCCCcc-CCCCC-C--CCceeEEEcCC-------CcEEEEEeC-C---CCCeEEE--EE
Q 020796 205 MRSFNGIGRVCMSESCDGGLTWSYAKP-TQLLN-P--NSGIDGVKLKD-------GRLLLAYNT-V---SRGVLKV--AL 267 (321)
Q Consensus 205 ~r~~~~~~~~~~~~S~D~G~tWs~~~~-~~~~~-~--~~~~~~~~~~~-------g~~~lv~~~-~---~r~~l~~--~~ 267 (321)
+|... +.+.+++|.|+|+||+++.. ..++. + .....++.+.. ++.+|+|.. . .|..+.+ .+
T Consensus 238 ~r~~~--g~~~v~~S~D~G~tW~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ll~~~p~~~~~r~~~~v~l~~ 315 (382)
T 1so7_A 238 ARSHL--RARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNP 315 (382)
T ss_dssp EEESS--SEEEEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEES
T ss_pred EecCC--CCEEEEEEcCCCCCCCCCEEcccccCCCCCCcceEEEEeCCccccccCCccEEEEeCCCCCCcccCCEEEEEe
Confidence 98864 46788999999999999763 23333 2 21112233322 677777753 1 4666665 45
Q ss_pred EcCCCCCCCcceeecccCCCceeceEEEEccCC-----eEEEEEEeC-CCeeEEEEeCC
Q 020796 268 SKDDGDSWHDALTLEENLAMEFSYPAVIQASDG-----SVHITYTYN-RTQIKHVVLLP 320 (321)
Q Consensus 268 S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg-----~l~v~y~~~-~~~i~~~~~~~ 320 (321)
|.|+|+||.....+.++ ...|+.+++++|| .|+|+|+.+ ++.|++++|++
T Consensus 316 S~D~G~tW~~~~~l~~~---~~~ys~~~~~~~g~dg~~~l~~lye~~~~~~I~~~~~~~ 371 (382)
T 1so7_A 316 RPPAPEAWSEPVLLAKG---SCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTL 371 (382)
T ss_dssp STTCGGGCCCCEEEEEE---EEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEEH
T ss_pred ecCCCCcCCCCEEECCC---CcccceeEEcCCCCcCCcEEEEEEECCCCCEEEEEEEEH
Confidence 88999999999888764 3678888877776 999999998 89999999975
|
| >3sil_A Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1.05A {Salmonella typhimurium} SCOP: b.68.1.1 PDB: 1dim_A* 1dil_A* 2sil_A 2sim_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=221.55 Aligned_cols=298 Identities=15% Similarity=0.124 Sum_probs=194.8
Q ss_pred eeEEecCCCCCC-CccccceEEEecCCcEEEEEecCCC--CCCCCcEEEEEEeCC-C-CcCCcEEccCCCC----CCCCC
Q 020796 13 EEFTFPANSAPF-KSCHASTIVEVDKGHFLVAYFGGSC--EGAPDVKIWLQTFKD-G-RWQSPIIADEEPN----VPMWN 83 (321)
Q Consensus 13 ~~~~f~~~~~~~-~~~~~p~l~~~~~g~l~~~~~~~~~--~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~----~~~~~ 83 (321)
.+.||+.+...+ ..+|+|+|+..++|.|+|++-+.-. .....+.|.+.+|.+ | ||++++.+..... ....+
T Consensus 18 ~~~lf~~g~~g~~~s~RiPsLv~~~~G~llA~aEar~~~~~d~~~~~i~~~~std~g~TW~~~~vl~~~~~~~~~~~v~~ 97 (379)
T 3sil_A 18 GNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSKLSRVMD 97 (379)
T ss_dssp SCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEEEEECCCCSCTTTCEEEE
T ss_pred ceeeecCCCCceEEEEEccEEEEcCCCEEEEEEEeeecCCCCcccceEEEEEeccCCCCccccEEEEecCCCccceeEec
Confidence 456777775444 4899999999999999987643211 123457788888886 5 9999987764322 23567
Q ss_pred eEEEEeC-CC--cEEEEEEeccc-------------cCCceeEEEEecCCCCCCCCCccCCC------CC-CCC--CCCc
Q 020796 84 PVLFKLP-SN--GLLLFYKIGQE-------------VQKWSGCMKRSYNKGVTWSEREQLPP------GI-LGP--SKNK 138 (321)
Q Consensus 84 p~l~~~~-~G--~l~l~~~~~~~-------------~~~~~~~~~~S~D~G~TWs~~~~l~~------~~-~g~--~~~~ 138 (321)
|+.+.+. +| +|||++..... ...+..++++|+|+|.||+++..... +. ... -.++
T Consensus 98 Pt~vv~~~tG~~~I~llvg~~~~~~~~~~~~~~~~~~~~~~l~lv~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~G~ 177 (379)
T 3sil_A 98 PTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHDIVTKNGTISAMLGGVGS 177 (379)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHHHHHHHCSEEEEEECSEE
T ss_pred CceEEeCCCCCeeEEEEEEeecCCCcceeeccccCCCCceeEEEEEccCCCCcCCCCcccccccccccceeeeecCCCCc
Confidence 9877654 58 99988542110 02345678999999999998652110 10 011 1234
Q ss_pred cEEccCCeEEEeeecccC---C-CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcE
Q 020796 139 PILLENGLLLCGSSVESW---N-SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRV 214 (321)
Q Consensus 139 ~~~~~~G~~~~~~~~~~~---~-~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~ 214 (321)
.+++.+|+|++|.+.... . .....+++|+| |+||+....+. ..+|.||.++++ +|+|+|.+|. . +..
T Consensus 178 GI~l~~G~Lv~P~~~~~~~~~~~~~~s~~iyS~D-G~tW~~~~~~~----~~~~~ep~vvE~-dG~L~m~~R~-~--g~r 248 (379)
T 3sil_A 178 GLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTD-GITWSLPSGYC----EGFGSENNIIEF-NASLVNNIRN-S--GLR 248 (379)
T ss_dssp CEECTTSCEEEEEEEEECTTSSCSEEEEEEEESS-SSSEECCSCCE----ECTTCCEEEEEE-TTEEEEEECC-S--SBC
T ss_pred eEEEcCCcEEEEEEEeeccCCCCCEEEEEEEcCC-CCCeEECCCCC----CccCCCCEEEEE-CCEEEEEEEe-C--CCE
Confidence 689999999998764211 1 23467889999 99999875332 136889999999 8999999998 3 334
Q ss_pred EEEEeccCCcCCCCCccCC----CCCCCCceeEEEc-CCCc-EEEEEeCC------CCCeEEEEEEcC--CCCCCCccee
Q 020796 215 CMSESCDGGLTWSYAKPTQ----LLNPNSGIDGVKL-KDGR-LLLAYNTV------SRGVLKVALSKD--DGDSWHDALT 280 (321)
Q Consensus 215 ~~~~S~D~G~tWs~~~~~~----~~~~~~~~~~~~~-~~g~-~~lv~~~~------~r~~l~~~~S~D--~G~tW~~~~~ 280 (321)
.+++|.|+|+||+++..+. .+.+...-.++.. .+++ ++|+.++. .|.+|.+++|++ ++.+|....-
T Consensus 249 ~v~~S~D~G~tWt~~~~~~~~~~~~~~~~~~s~i~~~~~~~~vmL~t~P~~~~~~~~R~~L~l~~sd~~~~~~~~~~~~g 328 (379)
T 3sil_A 249 RSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGEVKLIDDFY 328 (379)
T ss_dssp BCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCccCCCCcccccccccCCCCcccceEeeccCCCEEEEEECCCCccccccccceEEEEecCCCCCceEEeecc
Confidence 4568999999999875321 1223222222222 2566 44444542 388999999943 4444432211
Q ss_pred ecccCCCceeceEEEE---ccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 281 LEENLAMEFSYPAVIQ---ASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 281 l~~~~~~~~~yp~~~~---~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
.-.+....++|++|+. .+++.|+|+|+.++ .|.+++|+|
T Consensus 329 p~~~~~~~~aySsL~~~~~~~~~~l~~LyE~~~-~i~f~~lte 370 (379)
T 3sil_A 329 PKVGNASGAGYSCLSYRKNVDKETLYVVYEANG-SIEFQDLSR 370 (379)
T ss_dssp CSCCCTTSCCCEEEEEEEETTEEEEEEEEEETT-EEEEEECGG
T ss_pred ccccCCCceecCeeEecCCCCCCEEEEEEECCC-cEEEEecHH
Confidence 1111123578999986 44568999999986 899999987
|
| >1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-26 Score=215.68 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=191.1
Q ss_pred CCCccccceEEEecCCcEEEEEecCCCC--CCCCcEEEEEEeCC-C-CcCCcEEccCCC---CCCCCCeEEEEeCCCcEE
Q 020796 23 PFKSCHASTIVEVDKGHFLVAYFGGSCE--GAPDVKIWLQTFKD-G-RWQSPIIADEEP---NVPMWNPVLFKLPSNGLL 95 (321)
Q Consensus 23 ~~~~~~~p~l~~~~~g~l~~~~~~~~~~--g~~~~~i~~s~s~~-G-tWs~~~~~~~~~---~~~~~~p~l~~~~~G~l~ 95 (321)
.+..+|+|+|+.. +|.|+|++.+.... ....+.|+..++.| | +|++++.+.... .....+|+++. ++|+||
T Consensus 44 ~v~SfRiPSLV~v-~G~LlA~AEar~~~~~d~~~~~Ivs~rS~D~g~tWst~v~v~~~~~~~~~~v~~PTtVv-~gg~I~ 121 (648)
T 1ms9_A 44 VVHSFRLPALVNV-DGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVIV-KGNKLY 121 (648)
T ss_dssp ECSEEEEEEEEEE-TTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEEEEECCCCSSTTCEEEEEEEEE-ETTEEE
T ss_pred ceEEEeccEEEee-CCEEEEEEEEeecCCCCCCcceeEEEEecCCCCceeeeEEEecCCcccceEeeccceee-ecccEE
Confidence 3678999999986 79999877443221 22467788888765 5 999988765432 23466798876 478999
Q ss_pred EEEEeccc----------cCCceeE-----EEEecCCCC-----CCCCCccCCCCCCCC-----------CCCccEEccC
Q 020796 96 LFYKIGQE----------VQKWSGC-----MKRSYNKGV-----TWSEREQLPPGILGP-----------SKNKPILLEN 144 (321)
Q Consensus 96 l~~~~~~~----------~~~~~~~-----~~~S~D~G~-----TWs~~~~l~~~~~g~-----------~~~~~~~~~~ 144 (321)
|++..... ...+... +..|+|+|+ ||++|..|++..... -.++.+++.|
T Consensus 122 LL~g~y~~~~~~~~~~~~~~~~~llLVkG~V~~S~D~Gktsk~ItWs~p~~L~~~~~~~~~~~~~~~~~~GgGsGI~m~d 201 (648)
T 1ms9_A 122 VLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPAEMEGMHTNQFLGGAGVAIVASN 201 (648)
T ss_dssp EEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECGGGCCSBSSSSBEEEEEECSEECEECTT
T ss_pred EEEEeecCCcccccccccCCCcceEEEEeeeccccccccccceeeccCcccCccccccccccceeEEEEecCCceEEecC
Confidence 98752110 0122222 467999999 699998876432111 1234578999
Q ss_pred CeEEEeeecccCCC-CcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCC
Q 020796 145 GLLLCGSSVESWNS-WGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGG 223 (321)
Q Consensus 145 G~~~~~~~~~~~~~-~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G 223 (321)
|+|++|.+.....+ ....+++|+|+|+||+....+ + ..+|.||.++++ +|+|++..|...+ ...+++|.|+|
T Consensus 202 GtLVfPv~~~~~~g~~~s~iiySdD~G~TW~ls~~~--~--~~gc~EpsVvEw-dG~Lmm~~R~~~g--~R~Vy~S~D~G 274 (648)
T 1ms9_A 202 GNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGR--S--AFGCSEPVALEW-EGKLIINTRVDYR--RRLVYESSDMG 274 (648)
T ss_dssp SCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCC--C--CTTEEEEEEEEE-TTEEEEEEEETTS--CCCEEEESSTT
T ss_pred CcEEEEEEEEcccccceeeEEEecCCCCCEEECCCC--C--CCCccceEEEEE-CCEEEEEEEccCC--cEEEEEecCCC
Confidence 99999976543222 346788999999999987633 1 247899999999 7999999998753 33345799999
Q ss_pred cCCCCCccC---------CCCCC--CCceeEEEcCCCcEEEEE-eCC------CCCeEEEEEEcCCCCCCCccee-eccc
Q 020796 224 LTWSYAKPT---------QLLNP--NSGIDGVKLKDGRLLLAY-NTV------SRGVLKVALSKDDGDSWHDALT-LEEN 284 (321)
Q Consensus 224 ~tWs~~~~~---------~~~~~--~~~~~~~~~~~g~~~lv~-~~~------~r~~l~~~~S~D~G~tW~~~~~-l~~~ 284 (321)
+||+++... .++.+ .+.+-.+.. +|+-+|++ ++. .|..|.+++| |++++|....+ +.++
T Consensus 275 ~TWte~~~tlsrVW~n~~~~~~p~~~ss~itati-~gr~vmL~t~P~~~~~~~~r~~L~Lwvs-Dn~~~~~vgpvs~~~~ 352 (648)
T 1ms9_A 275 NTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTI-EGMRVMLFTHPLNFKGRWLRDRLNLWLT-DNQRIYNVGQVSIGDE 352 (648)
T ss_dssp SSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEE-TTEEEEEEEEECCSSCTTCCBCEEEEEE-CSSCEEEEEECSCTTC
T ss_pred ccccccccccccccccccccCCCCCCCceEEecc-CCceEEEEeCcCCCCcccccceeEEEEc-CCCeEEecCccccccC
Confidence 999987642 12222 223322222 45555554 432 2678999998 77777754322 3333
Q ss_pred CCCceeceEEEEccCCeEEEEEEeCC---CeeEEEEeCC
Q 020796 285 LAMEFSYPAVIQASDGSVHITYTYNR---TQIKHVVLLP 320 (321)
Q Consensus 285 ~~~~~~yp~~~~~~dg~l~v~y~~~~---~~i~~~~~~~ 320 (321)
.++|++|++ .||.|+++|+.++ ..|.+++|++
T Consensus 353 ---~~aYSsLl~-~dg~L~lLYE~~~~~~~~I~~~rLte 387 (648)
T 1ms9_A 353 ---NSAYSSVLY-KDDKLYCLHEINSNEVYSLVFARLVG 387 (648)
T ss_dssp ---BCCCEEEEE-ETTEEEEEEEEEETTEEEEEEEECHH
T ss_pred ---cccccceEe-ccceEEEEEEecCCCcceEEehhhhH
Confidence 468999987 7899999999865 4888988875
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=182.55 Aligned_cols=287 Identities=19% Similarity=0.189 Sum_probs=179.7
Q ss_pred eeeeeeEEecCCCCCC--CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC-C-CcCCcEEccCCC-CCCC-C
Q 020796 9 GLVAEEFTFPANSAPF--KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD-G-RWQSPIIADEEP-NVPM-W 82 (321)
Q Consensus 9 ~~~~~~~~f~~~~~~~--~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~-~~~~-~ 82 (321)
..+.++.||++... | .+...|.++.++||+||++|.....+. .+..+.+.+|+| | ||++...+.+.. +... .
T Consensus 4 ~~~~~~~if~~~~~-~~~~~~~yp~~v~L~dG~lLa~~~~~~~~~-~~~~~~v~rS~DgG~TW~~~~~v~~~~~g~~~~~ 81 (355)
T 3a72_A 4 TSLTNVTIFSPPSD-YIVPRTLYPRNEQLPNGDLLATWENYSPEP-PAVYFPIYRSKDHGKTWNEISRVHDTVNGYGLRY 81 (355)
T ss_dssp CCEEEEEEECCCTT-SCTTSEEEEEEEECTTSCEEEEEEECCCSS-SCCCEEEEEESSTTSCCEEEEEECCTTTSSCEEE
T ss_pred ccceeeeEecCCcc-cCCCCCccceEEEcCCCCEEEEEEeecCCC-CCceEEEEEEcCCCcCcCCCcccCCCcCCccccc
Confidence 45788999999753 3 445569999999999999986543321 233455667775 5 999987765432 2222 3
Q ss_pred CeEEEEeC-------CCcEEEEEEecc-ccCCceeEEEEecCCCCCCCCCccCCCCC-C----C--CCCCccEEccCCeE
Q 020796 83 NPVLFKLP-------SNGLLLFYKIGQ-EVQKWSGCMKRSYNKGVTWSEREQLPPGI-L----G--PSKNKPILLENGLL 147 (321)
Q Consensus 83 ~p~l~~~~-------~G~l~l~~~~~~-~~~~~~~~~~~S~D~G~TWs~~~~l~~~~-~----g--~~~~~~~~~~~G~~ 147 (321)
+|.++..| +|+|++...... +.......+.+|+|+|+||++...+..+. . | .+..+.+.+.+|++
T Consensus 82 ~P~l~~lp~~v~~~~~G~ll~~~~~~~~d~~~~~~~v~~S~D~G~TW~~~~~i~~~~~~~~~~g~~~v~eP~~~~~~G~l 161 (355)
T 3a72_A 82 QPFLYSLPERVGSFKKGTLLLAGSSIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEPFLLANKGKL 161 (355)
T ss_dssp EEEEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEESSTTSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTEE
T ss_pred CCcEEecCcccccCCCCcEEEEEeeecCCCCCceEEEEEECCCCccCccCccccccCccccccCCCccccceEEccCCeE
Confidence 68888777 999887744321 11234567899999999999887654311 0 1 01011345678998
Q ss_pred EEeeeccc---CCCCcEEEEEECCCCceeEEeeceecCCCC-cceeeeeEEEcCCCeEEEEEeecCC------CCcEEEE
Q 020796 148 LCGSSVES---WNSWGSWMEVTVDAGRSWRKYGPIYIPNES-LSVIQPVPFHTANRTLRVLMRSFNG------IGRVCMS 217 (321)
Q Consensus 148 ~~~~~~~~---~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~-~~~~~~~~~~~~~G~l~~~~r~~~~------~~~~~~~ 217 (321)
++....+. ..+......+|+| |+||+.+..+...... ....+|.+++++||++++.++.... ...+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~S~D-G~TWs~~~~~~~~~~~~~rpg~p~v~~l~dG~l~l~y~~~~~~~~~~~~~~~~~~ 240 (355)
T 3a72_A 162 ICYYSDQRDNATYGQTMVHQVTND-LKNWGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYR 240 (355)
T ss_dssp EEEEEECCCTTTCSCEEEEEEESS-SSSCCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEEBCTTSSSCBCBEEEE
T ss_pred EEEECCCCCCCCCCcEEEEEECCC-CCCCCCCeeccccCccCCCCCceEEEECCCCCEEEEEEECCCcccCCCceeEEEE
Confidence 77543332 1233456678999 8999876543222111 1123567889999999999876531 2368888
Q ss_pred EeccCCcCCCCCccCCCCC-----CCCceeEEEc----CCCcEEEEEeCCCCCeEEEEEEcCCC-CCCCcceeecccCCC
Q 020796 218 ESCDGGLTWSYAKPTQLLN-----PNSGIDGVKL----KDGRLLLAYNTVSRGVLKVALSKDDG-DSWHDALTLEENLAM 287 (321)
Q Consensus 218 ~S~D~G~tWs~~~~~~~~~-----~~~~~~~~~~----~~g~~~lv~~~~~r~~l~~~~S~D~G-~tW~~~~~l~~~~~~ 287 (321)
.|.| |++|..+....++. +.+...+... .+|++++.+.. + ..+++|.|+| .+|..... . .
T Consensus 241 iS~D-G~tw~~~~~~~~~~~~~~~~~g~p~v~~~~~gg~~g~ll~s~~~--~--~~v~~s~~~g~~~W~~~~~-~----~ 310 (355)
T 3a72_A 241 LSSD-PENIASAPGQRLVVSSGTQPTSSPYAVWTPYGGENGTIIVSSGT--Q--GTLFINKALGEGEWTEIPC-P----E 310 (355)
T ss_dssp EESS-TTCCTTSCCEECCBTTCCCCBSSCEEEEESTTSTTCEEEEECSS--C--SSEEEESSTTCSCBEEECC-S----S
T ss_pred ECCC-cccccCcCCcceecCCCcccCCCCeEEECcCCCCCCeEEEEcCC--C--cEEEEECCCCCCCCeECCC-C----C
Confidence 8977 89998764222211 1122233332 45787777632 2 2477899999 99987752 1 1
Q ss_pred ceeceE-EEEc-cCCe-EEEEEEe
Q 020796 288 EFSYPA-VIQA-SDGS-VHITYTY 308 (321)
Q Consensus 288 ~~~yp~-~~~~-~dg~-l~v~y~~ 308 (321)
..+|.. |..+ +|+. ++++|..
T Consensus 311 ~~~Ys~~l~~~~~~~~~~~~~~~~ 334 (355)
T 3a72_A 311 EHGYTRALRVLSEDGGRYLVVNSA 334 (355)
T ss_dssp CCCTTCEEEECSHHHHCEEEEEEC
T ss_pred CCCCChhheeeccCCceEEEEecc
Confidence 357888 7777 4555 6666654
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=174.94 Aligned_cols=284 Identities=18% Similarity=0.159 Sum_probs=178.0
Q ss_pred eeeeeeEEecCCCCCC--CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC-C-CcCCcEEccCC-CCCC-CC
Q 020796 9 GLVAEEFTFPANSAPF--KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD-G-RWQSPIIADEE-PNVP-MW 82 (321)
Q Consensus 9 ~~~~~~~~f~~~~~~~--~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~-~~~~-~~ 82 (321)
..+.++.||++... | .+...|.++.++||+||++|.....+ ..+..+.+.||+| | ||++...+.+. .+.. ..
T Consensus 9 ~~~~~~~if~~~~~-~~~~~~~yp~~v~L~dG~LLa~~~~~~~~-~~~~~~~v~rS~DgG~TW~~~~~v~~~~~g~~~~~ 86 (367)
T 2ydt_A 9 KTFSNVEIFDPPTN-YRDPQVLYARPLELSDGTLLGTWENYSPE-PPNVWFPIVKSKDGGKTWKEISKVKDTQNNWGLRY 86 (367)
T ss_dssp CCEEEEEEECCCTT-SCTTSEEEEEEEECTTSCEEEEEEECCCS-SSCCCEEEEEESSTTSSCEEEEEECCCSSSSCEEE
T ss_pred CcccceeEecCCcc-cCCCCCCceeEEEcCCCCEEEEEEeccCC-CCCeEEEEEEECCCCcCcCcCcccCCCCCCccccc
Confidence 46789999999753 2 44556999999999999998554322 1334466777776 5 99998766532 2222 23
Q ss_pred CeEEEEeC-------CCcEEEEEEecc-ccCCceeEEEEecCCCCCCCCCccCCCCCC-----C--CCCCccEEccCCeE
Q 020796 83 NPVLFKLP-------SNGLLLFYKIGQ-EVQKWSGCMKRSYNKGVTWSEREQLPPGIL-----G--PSKNKPILLENGLL 147 (321)
Q Consensus 83 ~p~l~~~~-------~G~l~l~~~~~~-~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~-----g--~~~~~~~~~~~G~~ 147 (321)
+|.++..+ +|+|++.+.... +.......+.+|+|+|+||+.+..+..+.. | .+..+.+.+.+|++
T Consensus 87 ~P~l~~lP~~i~~~~~G~lL~~~~s~~~d~~~~~i~v~~S~D~G~TW~~~~~i~~g~~~~~~~g~~~v~eP~~~~~~G~l 166 (367)
T 2ydt_A 87 QPQLYELPRAFGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEPFLMTYKEKL 166 (367)
T ss_dssp EEEEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEESSSSSCCEEEEEEEEESCSSCCTTCCCEEEEEEEEETTEE
T ss_pred CCeEEEccccccccCCCcEEEEEecccCCCCCCeEEEEEECCCCCCCcCCeecccCCCcccccCCCccccceEECCCCcE
Confidence 68887766 899988754321 112345678999999999998876543210 1 01011335678998
Q ss_pred EEeeecccC---CCCcEEEEEECCCCceeEEeeceecCCCCcc--eeeeeEEEcCCCeEEEEEeecCC---------CCc
Q 020796 148 LCGSSVESW---NSWGSWMEVTVDAGRSWRKYGPIYIPNESLS--VIQPVPFHTANRTLRVLMRSFNG---------IGR 213 (321)
Q Consensus 148 ~~~~~~~~~---~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~--~~~~~~~~~~~G~l~~~~r~~~~---------~~~ 213 (321)
++....+.. .+....+.+|+| |+||+.+.... .....+ .-+|.+++++||++++.++.... ...
T Consensus 167 ~v~~~d~~~~~~~~q~l~~~~S~D-G~TWs~~~~~~-~~~~~~~rpg~p~v~~l~dG~l~~~y~~~~~~~~~~~~~~~~~ 244 (367)
T 2ydt_A 167 ILYYSDQRDNATHSQKLVHQTTTD-LKKWSKVVDDT-KYANYYARPGMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFP 244 (367)
T ss_dssp EEEEEECCSTTTCSSEEEEEEESS-SSSCCCCEEEE-CCSSTTCEEEEEEEEECTTSCEEEEEEEETCSCCCTTCSCCCB
T ss_pred EEEECCCCCCCCCCcEEEEEECCC-CCCCCCceecc-ccCCcCCCCCcceEEECCCCcEEEEEEecCCCCcccccccccc
Confidence 765443331 123456678999 79998765332 111111 22467889999999999876531 245
Q ss_pred EEEEEeccCCcCCCCCccCCCCC-----CCCceeEEEc----CCCcEEEEEeCCCCCeEEEEEEcCCCC--CCCcceeec
Q 020796 214 VCMSESCDGGLTWSYAKPTQLLN-----PNSGIDGVKL----KDGRLLLAYNTVSRGVLKVALSKDDGD--SWHDALTLE 282 (321)
Q Consensus 214 ~~~~~S~D~G~tWs~~~~~~~~~-----~~~~~~~~~~----~~g~~~lv~~~~~r~~l~~~~S~D~G~--tW~~~~~l~ 282 (321)
+++..|.| |.+|..+....+.. +.+...++.. .+|++++.+.. +. .+++|.|+|+ +|..... .
T Consensus 245 ~~~~~S~D-G~tw~~~~~~~l~~~~~~~~~~sp~v~~~p~~~~~g~l~~s~~~--~~--~v~~~~~~g~~~~W~~~~~-~ 318 (367)
T 2ydt_A 245 VYYRLSKD-PQKFLNKAHHQIVSNDGTTPAGSPYVVWTPYGGKNGTIVVSCGT--RS--EIFTNQALGDASAWKKWDV-P 318 (367)
T ss_dssp EEEEEESS-TTCCTTSCCEECCCTTCCCCBSSCEEEEESTTSTTCEEEEECSS--CS--CEEEESSTTCTTCCEEECC-S
T ss_pred eEEEEcCC-ccccCCcCCceeecCCCcccCcCceEEECcCCCCCCeEEEEcCC--Cc--eEEEECCCCCCCcceeccC-C
Confidence 78888876 89999874222211 2223344444 46788777642 22 4778999998 9988754 1
Q ss_pred ccCCCceeceE-EEEccCC--eEEEEE
Q 020796 283 ENLAMEFSYPA-VIQASDG--SVHITY 306 (321)
Q Consensus 283 ~~~~~~~~yp~-~~~~~dg--~l~v~y 306 (321)
...+|.. |..++++ .|+|+.
T Consensus 319 ----~~~~Ys~~l~~~~~~~~~l~~~~ 341 (367)
T 2ydt_A 319 ----QPTAYTRSLLTFQKDPDLLMIMG 341 (367)
T ss_dssp ----SCCCTTCEEEEETTEEEEEEEEE
T ss_pred ----CCCCCCcceEecCCCCCEEEEec
Confidence 1347887 6666543 455555
|
| >3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=168.48 Aligned_cols=240 Identities=17% Similarity=0.113 Sum_probs=151.0
Q ss_pred CCcCCcEEccCCCC---CCCCCeEEEEeCCCcEEEEEEeccc-cCCceeEEEEecCCCCCCCCCccCCCCCCCC--C-CC
Q 020796 65 GRWQSPIIADEEPN---VPMWNPVLFKLPSNGLLLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQLPPGILGP--S-KN 137 (321)
Q Consensus 65 GtWs~~~~~~~~~~---~~~~~p~l~~~~~G~l~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~--~-~~ 137 (321)
++|++..++.+... .....|.++..+||+|++.|..... .+.....+++|+|+|+||+++..+.+...|. + ..
T Consensus 4 ~~~~~~~if~~~~~~~~~~~~yp~~v~L~dG~lLa~~~~~~~~~~~~~~~v~rS~DgG~TW~~~~~v~~~~~g~~~~~~P 83 (355)
T 3a72_A 4 TSLTNVTIFSPPSDYIVPRTLYPRNEQLPNGDLLATWENYSPEPPAVYFPIYRSKDHGKTWNEISRVHDTVNGYGLRYQP 83 (355)
T ss_dssp CCEEEEEEECCCTTSCTTSEEEEEEEECTTSCEEEEEEECCCSSSCCCEEEEEESSTTSCCEEEEEECCTTTSSCEEEEE
T ss_pred ccceeeeEecCCcccCCCCCccceEEEcCCCCEEEEEEeecCCCCCceEEEEEEcCCCcCcCCCcccCCCcCCcccccCC
Confidence 35665444443221 1233488999999999998875322 1334456899999999999987766533221 1 11
Q ss_pred ccEEcc-------CCeEEEeeeccc--CCCCcEEEEEECCCCceeEEeeceecCC---CC---cceeeeeEEEcCCCeEE
Q 020796 138 KPILLE-------NGLLLCGSSVES--WNSWGSWMEVTVDAGRSWRKYGPIYIPN---ES---LSVIQPVPFHTANRTLR 202 (321)
Q Consensus 138 ~~~~~~-------~G~~~~~~~~~~--~~~~~~~~~~S~D~G~tW~~~~~~~~~~---~~---~~~~~~~~~~~~~G~l~ 202 (321)
.+++++ +|+|+++...-. .....+.+++|+|+|+||+....+...+ .. .+.++| +..+.+|+|+
T Consensus 84 ~l~~lp~~v~~~~~G~ll~~~~~~~~d~~~~~~~v~~S~D~G~TW~~~~~i~~~~~~~~~~g~~~v~eP-~~~~~~G~l~ 162 (355)
T 3a72_A 84 FLYSLPERVGSFKKGTLLLAGSSIPTDLSSTDIVLYASQDDGMTWDFVSHIAAGGEARPNNGLTPVWEP-FLLANKGKLI 162 (355)
T ss_dssp EEEECSSCBTTBCTTCEEEEEEECCTTCCCEEEEEEEESSTTSCCEEEEEEEEESCSSCCTTCCCEEEE-EEEEETTEEE
T ss_pred cEEecCcccccCCCCcEEEEEeeecCCCCCceEEEEEECCCCccCccCccccccCccccccCCCccccc-eEEccCCeEE
Confidence 122334 899887733211 1234678999999999999986543211 11 124577 4556789999
Q ss_pred EEEeecC----CCCcEEEEEeccCCcCCCCCccCCCCCCC----CceeEEEcCCCcEEEEEeCC-------CCCeEEEEE
Q 020796 203 VLMRSFN----GIGRVCMSESCDGGLTWSYAKPTQLLNPN----SGIDGVKLKDGRLLLAYNTV-------SRGVLKVAL 267 (321)
Q Consensus 203 ~~~r~~~----~~~~~~~~~S~D~G~tWs~~~~~~~~~~~----~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~ 267 (321)
++++... ....++.+.|.| |+||+.+.....+.+. +...++++++|+++|+|+.. .+..+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~S~D-G~TWs~~~~~~~~~~~~~rpg~p~v~~l~dG~l~l~y~~~~~~~~~~~~~~~~~~i 241 (355)
T 3a72_A 163 CYYSDQRDNATYGQTMVHQVTND-LKNWGPVVEDVTYPTYTDRPGMPVVTKLPNGQYFYVYEYGSFFGTETYSFPLYYRL 241 (355)
T ss_dssp EEEEECCCTTTCSCEEEEEEESS-SSSCCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEEBCTTSSSCBCBEEEEE
T ss_pred EEECCCCCCCCCCcEEEEEECCC-CCCCCCCeeccccCccCCCCCceEEEECCCCCEEEEEEECCCcccCCCceeEEEEE
Confidence 9987542 123577789999 8999988754322211 12456789999999999753 235678888
Q ss_pred EcCCCCCCCcce--eec-ccCCCceeceEEEEc----cCCeEEEEEE
Q 020796 268 SKDDGDSWHDAL--TLE-ENLAMEFSYPAVIQA----SDGSVHITYT 307 (321)
Q Consensus 268 S~D~G~tW~~~~--~l~-~~~~~~~~yp~~~~~----~dg~l~v~y~ 307 (321)
|.| |.+|..+. .+. .......+.|.++.. .+|+|++++.
T Consensus 242 S~D-G~tw~~~~~~~~~~~~~~~~~g~p~v~~~~~gg~~g~ll~s~~ 287 (355)
T 3a72_A 242 SSD-PENIASAPGQRLVVSSGTQPTSSPYAVWTPYGGENGTIIVSSG 287 (355)
T ss_dssp ESS-TTCCTTSCCEECCBTTCCCCBSSCEEEEESTTSTTCEEEEECS
T ss_pred CCC-cccccCcCCcceecCCCcccCCCCeEEECcCCCCCCeEEEEcC
Confidence 865 99997653 122 111123567777664 4568887763
|
| >2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=165.66 Aligned_cols=223 Identities=16% Similarity=0.134 Sum_probs=144.6
Q ss_pred CCeEEEEeCCCcEEEEEEeccc-cCCceeEEEEecCCCCCCCCCccCCCCCCCC--CCCc-cEEc-------cCCeEEEe
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQLPPGILGP--SKNK-PILL-------ENGLLLCG 150 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~--~~~~-~~~~-------~~G~~~~~ 150 (321)
..|.++..+||+|+++|..... .+.+...+.+|+|+|+||+++..+.+...+. ..++ +..+ .+|+|++.
T Consensus 29 ~yp~~v~L~dG~LLa~~~~~~~~~~~~~~~v~rS~DgG~TW~~~~~v~~~~~g~~~~~~P~l~~lP~~i~~~~~G~lL~~ 108 (367)
T 2ydt_A 29 LYARPLELSDGTLLGTWENYSPEPPNVWFPIVKSKDGGKTWKEISKVKDTQNNWGLRYQPQLYELPRAFGKYPKGTVLCS 108 (367)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSSCCCEEEEEESSTTSSCEEEEEECCCSSSSCEEEEEEEEECSSCBTTBCTTCEEEE
T ss_pred CceeEEEcCCCCEEEEEEeccCCCCCeEEEEEEECCCCcCcCcCcccCCCCCCcccccCCeEEEccccccccCCCcEEEE
Confidence 3488999999999998875322 1334567899999999999987766533221 1111 1222 38998876
Q ss_pred eeccc--CCCCcEEEEEECCCCceeEEeeceecCCC------CcceeeeeEEEcCCCeEEEEEeecCC----CCcEEEEE
Q 020796 151 SSVES--WNSWGSWMEVTVDAGRSWRKYGPIYIPNE------SLSVIQPVPFHTANRTLRVLMRSFNG----IGRVCMSE 218 (321)
Q Consensus 151 ~~~~~--~~~~~~~~~~S~D~G~tW~~~~~~~~~~~------~~~~~~~~~~~~~~G~l~~~~r~~~~----~~~~~~~~ 218 (321)
...-. .....+.+++|+|+|+||+....+...+. ..+.+|| +....+|+|+++++.... ...+++.+
T Consensus 109 ~~s~~~d~~~~~i~v~~S~D~G~TW~~~~~i~~g~~~~~~~g~~~v~eP-~~~~~~G~l~v~~~d~~~~~~~~q~l~~~~ 187 (367)
T 2ydt_A 109 GSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVWEP-FLMTYKEKLILYYSDQRDNATHSQKLVHQT 187 (367)
T ss_dssp EEECCTTCCCEEEEEEEESSSSSCCEEEEEEEEESCSSCCTTCCCEEEE-EEEEETTEEEEEEEECCSTTTCSSEEEEEE
T ss_pred EecccCCCCCCeEEEEEECCCCCCCcCCeecccCCCcccccCCCccccc-eEECCCCcEEEEECCCCCCCCCCcEEEEEE
Confidence 43211 12446789999999999998765432111 1235578 555778999998866431 22467788
Q ss_pred eccCCcCCCCCccCC-CCCCCCc---eeEEEcCCCcEEEEEeCCC----------CCeEEEEEEcCCCCCCCcce--eec
Q 020796 219 SCDGGLTWSYAKPTQ-LLNPNSG---IDGVKLKDGRLLLAYNTVS----------RGVLKVALSKDDGDSWHDAL--TLE 282 (321)
Q Consensus 219 S~D~G~tWs~~~~~~-~~~~~~~---~~~~~~~~g~~~lv~~~~~----------r~~l~~~~S~D~G~tW~~~~--~l~ 282 (321)
|.| |+||+.+.... .+....+ ..++++++|+++|+|+... +..+.+.+|. ||.+|..+. .+.
T Consensus 188 S~D-G~TWs~~~~~~~~~~~~~rpg~p~v~~l~dG~l~~~y~~~~~~~~~~~~~~~~~~~~~~S~-DG~tw~~~~~~~l~ 265 (367)
T 2ydt_A 188 TTD-LKKWSKVVDDTKYANYYARPGMPTVAKLPNNEYIYVYEYGGGPNPPAGSDYWFPVYYRLSK-DPQKFLNKAHHQIV 265 (367)
T ss_dssp ESS-SSSCCCCEEEECCSSTTCEEEEEEEEECTTSCEEEEEEEETCSCCCTTCSCCCBEEEEEES-STTCCTTSCCEECC
T ss_pred CCC-CCCCCCceeccccCCcCCCCCcceEEECCCCcEEEEEEecCCCCcccccccccceEEEEcC-CccccCCcCCceee
Confidence 999 79999876432 1112111 3467899999999997532 3567788885 589998763 222
Q ss_pred cc-CCCceeceEEEEc----cCCeEEEEEE
Q 020796 283 EN-LAMEFSYPAVIQA----SDGSVHITYT 307 (321)
Q Consensus 283 ~~-~~~~~~yp~~~~~----~dg~l~v~y~ 307 (321)
.. .....+.|.++.. ++|+|++++.
T Consensus 266 ~~~~~~~~~sp~v~~~p~~~~~g~l~~s~~ 295 (367)
T 2ydt_A 266 SNDGTTPAGSPYVVWTPYGGKNGTIVVSCG 295 (367)
T ss_dssp CTTCCCCBSSCEEEEESTTSTTCEEEEECS
T ss_pred cCCCcccCcCceEEECcCCCCCCeEEEEcC
Confidence 11 1123567788776 5678888774
|
| >1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-20 Score=179.96 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=91.3
Q ss_pred cceEEEecCCcEEE-EEecCCCCCCCCcEEEE----EEeCCC-CcCCcEEccCCCC----CCCCCeEEEEeC--CCcEEE
Q 020796 29 ASTIVEVDKGHFLV-AYFGGSCEGAPDVKIWL----QTFKDG-RWQSPIIADEEPN----VPMWNPVLFKLP--SNGLLL 96 (321)
Q Consensus 29 ~p~l~~~~~g~l~~-~~~~~~~~g~~~~~i~~----s~s~~G-tWs~~~~~~~~~~----~~~~~p~l~~~~--~G~l~l 96 (321)
.+++...+||.|++ +|..+. ....+++ +.+.+| ++..+..+...+. ..++.|.|+..+ +|+|++
T Consensus 165 ~~~~~f~~dG~l~~~~~~~~~----~~~~~~~~G~~~~s~dG~~~~~~v~~~~~~~~~f~~~yRIPaL~~~~~~~GtLLA 240 (781)
T 1w0p_A 165 NPSASFYFDGKLIRDNIQPTA----SKQNMIVWGNGSSNTDGVAAYRDIKFEIQGDVIFRGPDRIPSIVASSVTPGVVTA 240 (781)
T ss_dssp SCEEEEEETTEEEEEEECCEE----CCCCEEEEEECCSSSCEEEEEEEEEEEECCEEEECTTCEEEEEEECSSSTTCEEE
T ss_pred CceeEEecCCcEEEEeccCCC----CcccEEEeccccccCCCcccceeEEEecCCCcccCCCCcCcEEEEccCCCCeEEE
Confidence 46777888999999 775532 1223455 456677 6666555543222 235679999888 799999
Q ss_pred EEEeccccCCc-------eeEEEEecCCCCCCCCCccCCCCC---CCC-CCC-ccEEcc-CCeEEEeeec-------cc-
Q 020796 97 FYKIGQEVQKW-------SGCMKRSYNKGVTWSEREQLPPGI---LGP-SKN-KPILLE-NGLLLCGSSV-------ES- 155 (321)
Q Consensus 97 ~~~~~~~~~~~-------~~~~~~S~D~G~TWs~~~~l~~~~---~g~-~~~-~~~~~~-~G~~~~~~~~-------~~- 155 (321)
++......+.. +..++||+|+|+||+++..|..+. .+. ..+ .+++.. +|+|++.... +.
T Consensus 241 ~ad~R~~~~D~g~~~~~~~Iv~rRS~DgG~TWs~~~~v~~~~~~~~~~~~~dP~~v~D~~tG~I~lf~~~~~~~~~~eg~ 320 (781)
T 1w0p_A 241 FAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPIYDPSSNTVLVSYARWPTDAAQNGD 320 (781)
T ss_dssp EEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEEEETTTTEEEEEEEEEETTCCSGGG
T ss_pred EEcccccCCCcccccCCceEEEEEcCCCCcccCCcEEEecCCCCCCCCeeeCCEEEEECCCCEEEEEEEeccCCcccccc
Confidence 98643221111 356899999999999998875431 111 112 223333 6998775321 10
Q ss_pred ----CCCCcEEEEEECCCCceeEEee
Q 020796 156 ----WNSWGSWMEVTVDAGRSWRKYG 177 (321)
Q Consensus 156 ----~~~~~~~~~~S~D~G~tW~~~~ 177 (321)
+....+++.+|+|+|+||+.+.
T Consensus 321 ~~~~~~~~~v~~~~S~D~G~TWS~P~ 346 (781)
T 1w0p_A 321 RIKPWMPNGIFYSVYDVASGNWQAPI 346 (781)
T ss_dssp CCCTTSCCEEEEEEEETTTTEECCCE
T ss_pred ccccCCCceEEEEEecCCCCcccCCe
Confidence 1124578889999999999854
|
| >2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-17 Score=150.85 Aligned_cols=147 Identities=22% Similarity=0.314 Sum_probs=89.9
Q ss_pred EEEEEECCCCceeEEeeceec--CCCCccee--ee-eEEEcCC----CeEEEEEeecC------CCCcEEEEEeccCCcC
Q 020796 161 SWMEVTVDAGRSWRKYGPIYI--PNESLSVI--QP-VPFHTAN----RTLRVLMRSFN------GIGRVCMSESCDGGLT 225 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~~~~~~--~~~~~~~~--~~-~~~~~~~----G~l~~~~r~~~------~~~~~~~~~S~D~G~t 225 (321)
+.+.+|+|+|+||+.+..+.. ...-..++ .| ..+++.+ |+|++.+.... +....++.+|.|+|+|
T Consensus 216 ~~~~~S~D~G~TWs~p~~l~~~~~~~~~~f~~~gpg~gI~l~d~~~~GrLv~p~~~~~~~~~~~g~~~~~v~~SdD~G~T 295 (471)
T 2w20_A 216 LWMSYSDDDGKTWSAPQDITPMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVSHLNGSQSSRIIYSDDHGKT 295 (471)
T ss_dssp EEEEEESSTTSSCCCCEECHHHHCCTTCSCEEECCEECEECCSSTTTTCEEEEEEECCTTTHHHHCCEEEEEEESSTTSS
T ss_pred EEEEEECCCcCcCCCCcccCcccccccccccccCCcceEEecCCCcCCeEEEEEEEeccccCCCCcEEEEEEEECCCCCC
Confidence 457899999999998764421 11101111 12 2356666 89887553321 1234677889999999
Q ss_pred CCCCccCCCCC-----------------CCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceee-cccCCC
Q 020796 226 WSYAKPTQLLN-----------------PNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTL-EENLAM 287 (321)
Q Consensus 226 Ws~~~~~~~~~-----------------~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l-~~~~~~ 287 (321)
|+....+..+. ......++.+++|+++|+++.. ...+.++.|.|+|+||+++... ..-+..
T Consensus 296 W~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~ep~vve~~dG~L~~~~R~~-~G~~~v~~S~DgG~TWs~~~~~~~~l~~~ 374 (471)
T 2w20_A 296 WHAGEAVNDNRQVDGQKIHSSTMNNRRAQNTESTVVQLNNGDVKLFMRGL-TGDLQVATSKDGGVTWEKDIKRYPQVKDV 374 (471)
T ss_dssp CEECCCTTTTEEETTEEECTTTCCCGGGCCCSEEEEECTTSCEEEEECCS-SSEEEEEEESSSSSSCCSCCEEEEEEECC
T ss_pred cccCCccCcccccCccccccccccccCcCccCCEEEEcCCCeEEEEEEeC-CCCEEEEEEcCCCcCCCCcccccCccCCc
Confidence 99876543210 0123457888899999988653 3446789999999999987532 221111
Q ss_pred ceeceEEEEccCCeEEEEEEe
Q 020796 288 EFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 288 ~~~yp~~~~~~dg~l~v~y~~ 308 (321)
.+.-..+....||..+++|..
T Consensus 375 ~~~~s~i~~~~dG~~vll~s~ 395 (471)
T 2w20_A 375 YVQMSAIHTMHEGKEYIILSN 395 (471)
T ss_dssp SSCCEEEEEEETTEEEEEEEE
T ss_pred ccccceEEEccCCCEEEEEec
Confidence 222234444578876666653
|
| >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=153.80 Aligned_cols=213 Identities=18% Similarity=0.213 Sum_probs=130.6
Q ss_pred CcCCcEEccCCCC---CCCCCeEEEEeCCCcEEEEEEecccc-C-----CceeEEEEecCCCCCCCCCccCCCCCC--CC
Q 020796 66 RWQSPIIADEEPN---VPMWNPVLFKLPSNGLLLFYKIGQEV-Q-----KWSGCMKRSYNKGVTWSEREQLPPGIL--GP 134 (321)
Q Consensus 66 tWs~~~~~~~~~~---~~~~~p~l~~~~~G~l~l~~~~~~~~-~-----~~~~~~~~S~D~G~TWs~~~~l~~~~~--g~ 134 (321)
+++++..+...+. ..++.|.|+..++|+|+++|...... . .....++||+|+|+||+++..+.+... ..
T Consensus 5 ~~~~~~~~f~~g~~~~~~~riP~l~~~~~G~lla~~~~r~~~~~d~~~~~~~i~~~rS~DgG~TWs~~~~v~~~~~~~~~ 84 (449)
T 2bf6_A 5 VKTEPVDLFHPGFLNSSNYRIPALFKTKEGTLIASIDARRHGGADAPNNDIDTAVRRSEDGGKTWDEGQIIMDYPDKSSV 84 (449)
T ss_dssp CBCCCEEEECTTGGGCSEEEEEEEEECTTSCEEEEEEEETTSSCCTTSSCEEEEEEEESSTTSSCCCCEEEECCSTTCEE
T ss_pred ccCCceEEEcCCCCCCceEEcceEEECCCCCEEEEEeCccCccccCCCCcceEEEEEcCCCCCCCCCCEEeecCCCcccc
Confidence 7788876654322 35678999999999999999754321 1 135678999999999999988764321 00
Q ss_pred CCCccEEcc-CCeEEEeeec--cc--------------------------------------------------------
Q 020796 135 SKNKPILLE-NGLLLCGSSV--ES-------------------------------------------------------- 155 (321)
Q Consensus 135 ~~~~~~~~~-~G~~~~~~~~--~~-------------------------------------------------------- 155 (321)
....+++.. +|+|++.... ..
T Consensus 85 ~dp~l~~d~~~G~i~l~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (449)
T 2bf6_A 85 IDTTLIQDDETGRIFLLVTHFPSKYGFWNAGLGSGFKNIDGKEYLCLYDSSGKEFTVRENVVYDKDSNKTEYTTNALGDL 164 (449)
T ss_dssp EEEEEEECTTTCCEEEEEEEECTTCCTTTCCSSCSEEEETTEEEEEEECTTCCEEEEETTEEECTTSCEEEEEECTTCEE
T ss_pred ccceeEEECCCCeEEEEEeccccccccccccccccccccccceeeeeecccCcceeeecceeecCcCccceeeecccccc
Confidence 111122222 5777654211 00
Q ss_pred -------------------CCCCcEEEEEECCCCceeEEeeceec--CCCCccee--ee-eEEEcCC----CeEEEEEee
Q 020796 156 -------------------WNSWGSWMEVTVDAGRSWRKYGPIYI--PNESLSVI--QP-VPFHTAN----RTLRVLMRS 207 (321)
Q Consensus 156 -------------------~~~~~~~~~~S~D~G~tW~~~~~~~~--~~~~~~~~--~~-~~~~~~~----G~l~~~~r~ 207 (321)
.......+.+|+|+|+||+++..+.. ...-.... .+ ..+.+.+ |+|++.+..
T Consensus 165 ~~~g~~~~ni~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~~~g~Gi~l~~g~~~Grlv~p~~~ 244 (449)
T 2bf6_A 165 FKNGTKIDNINSSTAPLKAKGTSYINLVYSDDDGKTWSEPQNINFQVKKDWMKFLGIAPGRGIQIKNGEHKGRIVVPVYY 244 (449)
T ss_dssp EETTEEEEETTSSSCSSEECSSCEEEEEEESSTTSSCCCCEECHHHHCCTTCSCEEECSEECEECCSSTTTTCEEEEEEE
T ss_pred ccCcccccceecccCccccccccEEEEEEEcCCCccCCCCccCccccccccceeecccCCeEEEeccCCcCCEEEEEEEE
Confidence 01124568899999999998754421 11100011 11 2234554 898875432
Q ss_pred cC--CCCcEEEEEeccCCcCCCCCccCCCCC------------------CCCceeEEEcCCCcEEEEEeCCCCCeEEEEE
Q 020796 208 FN--GIGRVCMSESCDGGLTWSYAKPTQLLN------------------PNSGIDGVKLKDGRLLLAYNTVSRGVLKVAL 267 (321)
Q Consensus 208 ~~--~~~~~~~~~S~D~G~tWs~~~~~~~~~------------------~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~ 267 (321)
.. +.....+.+|.|+|+||+......... ......++.+++|+++|+++.. ...+.++.
T Consensus 245 ~~~~g~~~~~v~~S~D~G~tW~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~e~~vve~~dG~l~~~~R~~-~g~~~v~~ 323 (449)
T 2bf6_A 245 TNEKGKQSSAVIYSDDSGKNWTIGESPNDNRKLENGKIINSKTLSDDAPQLTECQVVEMPNGQLKLFMRNL-SGYLNIAT 323 (449)
T ss_dssp ECTTCCEEEEEEEESSTTSSCEECCCTTTTEECTTSCEECTTTCCCSTTCEEEEEEEECTTSCEEEEEEES-SSEEEEEE
T ss_pred EcCCCCEEEEEEEECCCCCceeECCccCcccccccccccccccccccCCCCCCCEEEEecCCEEEEEEEeC-CCCEEEEE
Confidence 21 222467788999999999754321100 0112347788899999998754 34568899
Q ss_pred EcCCCCCCCcce
Q 020796 268 SKDDGDSWHDAL 279 (321)
Q Consensus 268 S~D~G~tW~~~~ 279 (321)
|.|+|+||+++.
T Consensus 324 S~D~G~TWs~~~ 335 (449)
T 2bf6_A 324 SFDGGATWDETV 335 (449)
T ss_dssp ESSTTSCCCSCC
T ss_pred ECCCCccccCcc
Confidence 999999999863
|
| >4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=141.85 Aligned_cols=224 Identities=15% Similarity=0.209 Sum_probs=135.0
Q ss_pred cccceEEEec-CCcEEEEEecCC-----------CCCC---CCcEEEEEEeCC-C-CcCCcEEccCC---CCCC--CCCe
Q 020796 27 CHASTIVEVD-KGHFLVAYFGGS-----------CEGA---PDVKIWLQTFKD-G-RWQSPIIADEE---PNVP--MWNP 84 (321)
Q Consensus 27 ~~~p~l~~~~-~g~l~~~~~~~~-----------~~g~---~~~~i~~s~s~~-G-tWs~~~~~~~~---~~~~--~~~p 84 (321)
+..|+++..+ +|+||++|.... ..|. ....+++.+|+| | ||++|..+... +... ...|
T Consensus 248 ~~nP~lvvD~~tG~I~L~~~~~~g~~~~~~w~~~~~g~~~~~t~~~~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~g~ 327 (523)
T 4fj6_A 248 VGDPSILVDEKTNTIWVVAAWTHGMGNERAWWNSMPGMTPDETAQLMLVKSEDDGKTWSEPINITSQVKDPSWYFLLQGP 327 (523)
T ss_dssp EEEEEEEECTTTCCEEEEEEECCSCTTSCGGGTCCSSSSTTTSCEEEEEEESSTTSSCCCCEECHHHHCCTTCSEEEECS
T ss_pred ccCceEEEECCCCeEEEEEEecccccccccccccccCCCCCcceEEEEEEcCCCCccCCCCeeecccccCCcceEEecCC
Confidence 3468998876 799999853211 0111 113577888876 6 99999877532 1110 1111
Q ss_pred -EEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEE
Q 020796 85 -VLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWM 163 (321)
Q Consensus 85 -~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 163 (321)
.-+..++|+|++-.......+.....+.+|+|+|+||+....+.. ++..+.++.+++|++++.+.... .+ ...+
T Consensus 328 G~GI~l~dGrLv~P~~~~~~~g~~~s~i~~S~D~G~TW~~~~~~~~---~~~e~~vve~~dG~L~~~~R~~~-~g-~r~v 402 (523)
T 4fj6_A 328 GRGITMQDGTLVFPIQFIDATRVPNAGIMYSKDRGKTWHLHNLART---NTTEAQVAEVEPGVLMLNMRDNR-GG-SRAV 402 (523)
T ss_dssp EECEECTTSCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCSEE---TEEEEEEEEEETTEEEEEEEETT-CS-BCEE
T ss_pred CcceEEeCCeEEEEEEEEcCCCCEEEEEEEECCCCCeEEECCCCCc---cccCCEEEEecCCEEEEEEEecC-CC-cEEE
Confidence 113457999876433222223334568899999999987654432 23455567788999887543321 12 3478
Q ss_pred EEECCCCceeEEeece--ecCCCCcceeeeeEEEcC-----CC-eEEEEEeecC--CCCcEEEEEeccCCcCCCCCccC-
Q 020796 164 EVTVDAGRSWRKYGPI--YIPNESLSVIQPVPFHTA-----NR-TLRVLMRSFN--GIGRVCMSESCDGGLTWSYAKPT- 232 (321)
Q Consensus 164 ~~S~D~G~tW~~~~~~--~~~~~~~~~~~~~~~~~~-----~G-~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~~~- 232 (321)
++|.|+|+||++.... .++.. . ++.+++... +| +++++..... .+..+.+..|.|+|+||+....+
T Consensus 403 ~~S~D~G~TWt~~~~~~~~L~~P--~-c~~Sii~~~~~~~~~g~~~lL~snp~~~~~R~~l~v~~S~D~G~TW~~~~~v~ 479 (523)
T 4fj6_A 403 ATTKDLGKTWTEHPSSRSALQES--V-CMASLIKVNAKDNITGKDLLLFSNPNTTKGRNHITIKASLDGGLTWPTEHQVL 479 (523)
T ss_dssp EEESSTTSSCEECTTTTTSSBCS--S-CCCEEEEECGGGSTTCSCEEEEEEECCSSSSCCEEEEEESSTTSCCCGGGEEE
T ss_pred EEECCCCCccCcCcCccccCCCC--C-cccEEEEEecccCCCCCcEEEEEccCCCCccccceEEEeCCCCCCCccCceEE
Confidence 9999999999986421 11111 1 233444332 23 5666655432 24467777899999999975422
Q ss_pred -CCCCCCCceeEEEcCCCcEEEEEeCC
Q 020796 233 -QLLNPNSGIDGVKLKDGRLLLAYNTV 258 (321)
Q Consensus 233 -~~~~~~~~~~~~~~~~g~~~lv~~~~ 258 (321)
..+...+..++..+++|+++++|+..
T Consensus 480 ~~~~~~~~Ys~l~~~~dG~i~ilYE~~ 506 (523)
T 4fj6_A 480 LDEAEGWGYSCLSMIDKETVGIFYESS 506 (523)
T ss_dssp EECSCCCCCEEEEECSSSEEEEEECCS
T ss_pred EcCCCCcccceEEEcCCCEEEEEEEcC
Confidence 11223344567888999999999864
|
| >1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=146.61 Aligned_cols=201 Identities=21% Similarity=0.226 Sum_probs=128.3
Q ss_pred CCCCCCeEEEEeCCCcEEEEEEeccccC----CceeEEEEecCCCCCCCCCccCCCCC-CCCC---CCcc-EEc-cCCeE
Q 020796 78 NVPMWNPVLFKLPSNGLLLFYKIGQEVQ----KWSGCMKRSYNKGVTWSEREQLPPGI-LGPS---KNKP-ILL-ENGLL 147 (321)
Q Consensus 78 ~~~~~~p~l~~~~~G~l~l~~~~~~~~~----~~~~~~~~S~D~G~TWs~~~~l~~~~-~g~~---~~~~-~~~-~~G~~ 147 (321)
..++..|.|+..++|+|+++|..+.... .....+.+|+|+|+||+++..+.++. .+.. .++. ++. .+|+|
T Consensus 18 ~~~~~~P~L~~~~~G~lla~~~~~~~~~~~~~~~~i~~~rS~DgG~TW~~~~~l~~~~~~~~~~~~~~P~~~~d~~~g~i 97 (601)
T 1w8o_A 18 FPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKGFSDPSYLVDRETGTI 97 (601)
T ss_dssp CSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSCBEEEEEEEEECTTTCCE
T ss_pred cceEeEeeEEECCCCCEEEEEcccCCCCCCCCcceEEEEEeCCCCCCCCCCEEEecCccCCCCCccccceEEEECCCCeE
Confidence 3456789999999999999988643321 12456899999999999998776532 1111 1122 233 37898
Q ss_pred EEeeec-c--cC------------CCCcEEEEEECCCCceeEEeeceecC--CCCcc-ee-ee-eEEEcCC----CeEEE
Q 020796 148 LCGSSV-E--SW------------NSWGSWMEVTVDAGRSWRKYGPIYIP--NESLS-VI-QP-VPFHTAN----RTLRV 203 (321)
Q Consensus 148 ~~~~~~-~--~~------------~~~~~~~~~S~D~G~tW~~~~~~~~~--~~~~~-~~-~~-~~~~~~~----G~l~~ 203 (321)
++.... . .+ +.....+++|+|+|+||+.+..+... ..... .+ .+ ..+.+.+ |+|++
T Consensus 98 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~~~~G~l~~ 177 (601)
T 1w8o_A 98 FNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQ 177 (601)
T ss_dssp EEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECSEECEECCSSTTTTCEEE
T ss_pred EEEEEeecCCCccccccCCCccCCceEEEEEEEecCCCCCCCCcccccccccCCCeeEEEecCCeEEEccCCCcCceEEE
Confidence 765321 0 00 11346899999999999987633210 01111 11 11 2234554 88887
Q ss_pred EEeecCCC--CcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCC-CCCeEEEEEEcCCCCCCCccee
Q 020796 204 LMRSFNGI--GRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTV-SRGVLKVALSKDDGDSWHDALT 280 (321)
Q Consensus 204 ~~r~~~~~--~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~-~r~~l~~~~S~D~G~tW~~~~~ 280 (321)
.+....+. ....+.+|.|+|+||+....+.. ......++.+++|+++|+++.. .+..+.+++|.|+|+||+++..
T Consensus 178 ~~~~~~g~~~~~~~~~~S~D~G~TW~~~~~~~~--~~~~~~v~~~~dG~l~~~~r~~~~~~~~~~~~S~DgG~tW~~~~~ 255 (601)
T 1w8o_A 178 QYTIINAAGAFQAVSVYSDDHGRTWRAGEAVGV--GMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHSYGPVTI 255 (601)
T ss_dssp EEEEECTTSCEEEEEEEESSTTSSCEECCCBCS--SCCSEEEEECTTSCEEEEECCTTCCSEEEEEEESSTTSCCCCCEE
T ss_pred EEEEcCCCCceeEEEEEECCCCcCccCCCCCCC--CCCcCEEEEeCCCEEEEEEeCCCCCCCEEEEEEcCCCCCCCCCee
Confidence 65443221 24667889999999998765321 2234567788899999977653 2456788999999999998753
|
| >1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-15 Score=135.57 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=121.4
Q ss_pred CCCCCCCeEEE-EeCCCcEEEEEEecccc-CCc-e-eEEEEecCCCC----CCCCCccCCCCCCCC--CCCccE-Ecc-C
Q 020796 77 PNVPMWNPVLF-KLPSNGLLLFYKIGQEV-QKW-S-GCMKRSYNKGV----TWSEREQLPPGILGP--SKNKPI-LLE-N 144 (321)
Q Consensus 77 ~~~~~~~p~l~-~~~~G~l~l~~~~~~~~-~~~-~-~~~~~S~D~G~----TWs~~~~l~~~~~g~--~~~~~~-~~~-~ 144 (321)
...++..|.|+ ..++|+|++++...... ... . ..+.+|+|+|+ ||+++..+.+...+. ..++.+ +.. +
T Consensus 18 ~~~s~riP~Lv~~~~~G~l~a~~e~~~~~~~~~~~~i~~~rS~D~G~~~~~tW~~~~~~~~~~~~~~~~~~P~~v~d~~~ 97 (382)
T 1so7_A 18 GAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHRSMNPCPLYDAQT 97 (382)
T ss_dssp TTCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTEEEEEEEEEECTTT
T ss_pred CceEEEeCeEEEECCCCeEEEEEccCcCCCCCCCCEEEEEEeeeCCccccceeCCcEEeccCCCCCCccccceEEEECCC
Confidence 33456779998 88899999887643211 111 1 46789999999 999998776542110 111222 323 6
Q ss_pred CeEEEeeecc--c----------CCCCcEEEEEECCCCceeEEeeceecC--CC-Ccce----eee-eEEEcCC--CeEE
Q 020796 145 GLLLCGSSVE--S----------WNSWGSWMEVTVDAGRSWRKYGPIYIP--NE-SLSV----IQP-VPFHTAN--RTLR 202 (321)
Q Consensus 145 G~~~~~~~~~--~----------~~~~~~~~~~S~D~G~tW~~~~~~~~~--~~-~~~~----~~~-~~~~~~~--G~l~ 202 (321)
|+|++..... . .......+++|+|+|+||+.+..+... +. .... ..| ..+++.+ |+|+
T Consensus 98 g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~DgG~TW~~~~~l~~~~~g~~~~~~~~~~~~pg~gi~l~~~~G~lv 177 (382)
T 1so7_A 98 GTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGHCLQLNDRARSLV 177 (382)
T ss_dssp CCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSSCCEECCSTTCCEE
T ss_pred CcEEEEEEEecCCCccceeecCCCCccEEEEEEEcCCCCcCCCCccCChhhcCCCCCCceeeccCCCcEeecccCCCcEE
Confidence 8887653211 0 112346789999999999986533210 11 0010 011 3346677 9988
Q ss_pred EEEeec-CC------CCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEc---CCCcEEEEEeCCCCCeEEEEEEcCCC
Q 020796 203 VLMRSF-NG------IGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKL---KDGRLLLAYNTVSRGVLKVALSKDDG 272 (321)
Q Consensus 203 ~~~r~~-~~------~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~---~~g~~~lv~~~~~r~~l~~~~S~D~G 272 (321)
+.+... .. .....+.+|+|+|+||+....+. .. ...+.++.+ .+|+++|+++.. .....++.|.|+|
T Consensus 178 ~p~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~-~~-~~~~~~~~~~~~~dg~l~~~~r~~-~g~~~v~~S~D~G 254 (382)
T 1so7_A 178 VPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVA-QD-TLECQVAEVETGEQRVVTLNARSH-LRARVQAQSTNDG 254 (382)
T ss_dssp EEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCS-BS-EEEEEEEEEEC--CEEEEEEEEES-SSEEEEEEESSTT
T ss_pred EEEEEecccccccCCCceeEEEEECCCCceeEcCcccC-CC-CCccEEEEEEECCCCEEEEEEecC-CCCEEEEEEcCCC
Confidence 743221 11 12456788999999999866432 11 122344555 789999988753 2356889999999
Q ss_pred CCCCccee
Q 020796 273 DSWHDALT 280 (321)
Q Consensus 273 ~tW~~~~~ 280 (321)
+||+++..
T Consensus 255 ~tW~~~~~ 262 (382)
T 1so7_A 255 LDFQESQL 262 (382)
T ss_dssp SSCCCCEE
T ss_pred CCCCCCEE
Confidence 99998753
|
| >2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=141.20 Aligned_cols=195 Identities=17% Similarity=0.171 Sum_probs=121.8
Q ss_pred CcEEEEEEeCC-C-CcCCcEEccCCCCCC----CCCeE--EEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCc
Q 020796 54 DVKIWLQTFKD-G-RWQSPIIADEEPNVP----MWNPV--LFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE 125 (321)
Q Consensus 54 ~~~i~~s~s~~-G-tWs~~~~~~~~~~~~----~~~p~--l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~ 125 (321)
...+++.+|+| | ||++|+.+.+..... ...|. +....+|+|++.+... +...+.+|+|+|+||+...
T Consensus 445 ~~~~~v~rS~DgG~TWs~p~~l~~~~~~~~~~~~~~pg~GI~~~~~GrLv~p~~~~-----~~s~v~~S~DgG~TW~~~~ 519 (686)
T 2jkb_A 445 TNYIAMTTSQNRGESWEQFKLLPPFLGEKHNGTYLCPGQGLALKSSNRLIFATYTS-----GELTYLISDDSGQTWKKSS 519 (686)
T ss_dssp SCEEEEEEESSTTSCCCCCEECCCSSCTTSCCCEECSEECEECTTSSCEEEEEEET-----TEEEEEEESSTTSSCEEEE
T ss_pred ccEEEEEEECCCCCcCCCCeecccccCcccceeeeCCCcceEEccCCeEEEEEecC-----CcEEEEEECCCCCeeEeCc
Confidence 45678888886 6 999998774321111 11221 2224589998865431 3456899999999999877
Q ss_pred cCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeecee-cCCCCcceeeee---EEEcCCCeE
Q 020796 126 QLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY-IPNESLSVIQPV---PFHTANRTL 201 (321)
Q Consensus 126 ~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~~~~~~~---~~~~~~G~l 201 (321)
.+.++..++....++.+++|++++....+. + ...+++|+|+|+||+...... ++....+| +.+ ...+.+|++
T Consensus 520 ~~~p~~~~~~e~~ivel~dG~L~~~~R~~~--G-~~~v~~S~DgG~TWs~~~~~~~L~~p~~g~-~~sii~~~~l~dG~~ 595 (686)
T 2jkb_A 520 ASIPFKNATAEAQMVELRDGVIRTFFRTTT--G-KIAYMTSRDSGETWSKVSYIDGIQQTSYGT-QVSAIKYSQLIDGKE 595 (686)
T ss_dssp EECSCSSCCCCEEEEEEETTEEEEEECCSS--S-SCEEEEESSTTSSCCCCEECSSCCCCSSCC-CCEEEEEEEEETTEE
T ss_pred ccCCCCCCceeeEEEEecCCEEEEEEEcCC--C-cEeEEEeCCCCCCCccccccccCcCCCCce-eEEEEEeeecCCCCE
Confidence 654432233444556678999887654321 2 356899999999999875332 22222233 222 224578998
Q ss_pred EEEEeecC---C--CCcEEEE--EeccCCcCCCCCccCCCCCC-CCceeEEEcCCCcEEEEEeC
Q 020796 202 RVLMRSFN---G--IGRVCMS--ESCDGGLTWSYAKPTQLLNP-NSGIDGVKLKDGRLLLAYNT 257 (321)
Q Consensus 202 ~~~~r~~~---~--~~~~~~~--~S~D~G~tWs~~~~~~~~~~-~~~~~~~~~~~g~~~lv~~~ 257 (321)
++++.... . ...++++ +|.|+|+||+.+..+..+.. .+...++.+++|+++++|+.
T Consensus 596 ~ll~s~p~~~~~R~~~~l~~S~~~S~D~G~TW~~~~~i~~~~~~~~Ys~l~~~~DG~i~ilye~ 659 (686)
T 2jkb_A 596 AVILSTPNSRSGRKGGQLVVGLVNKEDDSIDWKYHYDIDLPSYGYAYSAITELPNHHIGVLFEK 659 (686)
T ss_dssp EEEEEEECCSSSSBCEEEEEEEECTTTCCEEEEEEEESSCTTSBCCSEEEEECTTSCEEEEEEC
T ss_pred EEEEECCCCCCcceeeEEEEEEEeccCCCCcccCCeeecCCCCCccccEEEEeCcCEEEEEEeC
Confidence 77774432 1 1345544 57899999998765543221 23356778889999999863
|
| >2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=132.65 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=123.6
Q ss_pred CCCCCCeEEEEeCCCcEEEEEEeccc-c---CCceeEEEEec---CCC---CCCCCCccCCCCCCCCCCCccE-EccCCe
Q 020796 78 NVPMWNPVLFKLPSNGLLLFYKIGQE-V---QKWSGCMKRSY---NKG---VTWSEREQLPPGILGPSKNKPI-LLENGL 146 (321)
Q Consensus 78 ~~~~~~p~l~~~~~G~l~l~~~~~~~-~---~~~~~~~~~S~---D~G---~TWs~~~~l~~~~~g~~~~~~~-~~~~G~ 146 (321)
..++..|.|+..++|+|+++|..... . +.....+.+|+ |+| +||+++..|.+.......++.+ +..+|+
T Consensus 35 ~~s~r~PsLv~~~~G~l~A~~e~~~~~~~d~g~~~i~~~rS~~~~D~G~~~~tW~~~~~l~~~~~~~~~~Pt~v~~~~g~ 114 (386)
T 2xzi_A 35 FHSFRIPAVVRTTTGRILAFAEGRRHTNQDFGDINLVYKRTKTTANNGASPSDWEPLREVVGSGAGTWGNPTPVVDDDNT 114 (386)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEESSSSCSSSSEEEEEEEBSSSSSTTCSGGGBCCCEEEECCSSSEEEEEEEEECTTSC
T ss_pred eEEEEeeEEEEeCCCcEEEEEEeeeCCCCCCCceeEEEEEeeeecCCCcCceeccCcEEEeeCCCCcccccEEEEeCCCC
Confidence 34577899999899999999875422 1 22235688999 999 9999998876532211222223 333789
Q ss_pred EEEeeec--c-----c----------------C-CCCcEEEEEECCCCceeEEeeceec--CCCCc-c-eeee-eEEEcC
Q 020796 147 LLCGSSV--E-----S----------------W-NSWGSWMEVTVDAGRSWRKYGPIYI--PNESL-S-VIQP-VPFHTA 197 (321)
Q Consensus 147 ~~~~~~~--~-----~----------------~-~~~~~~~~~S~D~G~tW~~~~~~~~--~~~~~-~-~~~~-~~~~~~ 197 (321)
|++.... . . + +.....+.+|+|+|+||+.+..+.. ..... . ...+ ..+++.
T Consensus 115 I~l~~~~~~g~y~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~S~D~G~TWs~p~~l~~~~~~~~~~~~~~~~g~gI~l~ 194 (386)
T 2xzi_A 115 IYLFLSWNGATYSQNGKDVLPDGTVTKKIDSTWEGRRHLYLTESRDDGNTWSKPVDLTKELTPDGWAWDAVGPGNGIRLT 194 (386)
T ss_dssp EEEEEEEECTTEESSSCCBCTTSCBCEECCSSTTTSCEEEEEEESSTTSCCCCCEECHHHHSCTTCCSCCBCSSCCEECT
T ss_pred EEEEEEeccccccccCcceeccCceecccccccccccEEEEEEECCCCccCCCcccCccccccccceeeccCCccEEEec
Confidence 8776421 0 0 0 1235778999999999997654421 11000 0 0011 235677
Q ss_pred CCeEEEEEeecCCCCcEEEEEecc--CCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCC
Q 020796 198 NRTLRVLMRSFNGIGRVCMSESCD--GGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSW 275 (321)
Q Consensus 198 ~G~l~~~~r~~~~~~~~~~~~S~D--~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW 275 (321)
+|+|++.++ ..+.+|.| +|+||+....+ +.+ ..+.++.+.+|+|+|+.+........++.|.| .||
T Consensus 195 dGrLv~p~~-------~~~~~S~D~~~G~tW~~~~~~--~~~-~e~~vve~~dG~L~~~~r~~~g~~r~v~~S~D--~tW 262 (386)
T 2xzi_A 195 TGELVIPAM-------GRNIIGRGAPGNRTWSVQRLS--GAG-AEGTIVQTPDGKLYRNDRPSQKGYRMVARGTL--EGF 262 (386)
T ss_dssp TSCEEEEET-------TEEEEEESSTTSCEEEEEECT--TCC-SSEEEEECTTSCEEEEECCSSSEEEEEEEEET--TEE
T ss_pred CCEEEEEeE-------EEEEEccCCCCCCcccccCcC--CCC-CcCEEEEeCCCcEEEEEeCCCCccEEEEEEeC--Ccc
Confidence 999988665 24456999 99999975443 222 34678888999999988764322457889998 999
Q ss_pred Cccee
Q 020796 276 HDALT 280 (321)
Q Consensus 276 ~~~~~ 280 (321)
+++..
T Consensus 263 t~~~~ 267 (386)
T 2xzi_A 263 GAFAP 267 (386)
T ss_dssp CCCEE
T ss_pred Ccccc
Confidence 99864
|
| >2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=132.40 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=118.3
Q ss_pred EEEEEEeCC-C-CcCCcEEccCCCCCCCCC-----eE-EEEeCC----CcEEEEEEeccccCCceeEEEEecCCCCCCCC
Q 020796 56 KIWLQTFKD-G-RWQSPIIADEEPNVPMWN-----PV-LFKLPS----NGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSE 123 (321)
Q Consensus 56 ~i~~s~s~~-G-tWs~~~~~~~~~~~~~~~-----p~-l~~~~~----G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~ 123 (321)
.+++.+|+| | ||++|..+.. .....+. |. -+...+ |+|++...... .....+.+|+|+|+||+.
T Consensus 427 ~i~v~~S~DgG~TWs~p~~l~~-~~~~~~~~~~~gpG~gI~l~d~~~~GrLv~p~~~~~---~~~s~i~~SdDgG~TW~~ 502 (679)
T 2sli_A 427 YLAMRYSDDEGASWSDLDIVSS-FKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKS---SAELGFMYSDDHGDNWTY 502 (679)
T ss_dssp EEEEEEESSTTSSCCCCEECGG-GCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEES---SCSEEEEEESSTTSSCEE
T ss_pred EEEEEEeCCCCccCCCCcccCc-ccCccccceecCCCceEEecCCCCCCEEEEEEEecC---CCEEEEEEECCCCCceEe
Confidence 478888886 6 9999998764 1111111 11 012334 89887443211 124568899999999998
Q ss_pred CccCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeecee-cCCCCcceeeeeE---EEcCCC
Q 020796 124 REQLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY-IPNESLSVIQPVP---FHTANR 199 (321)
Q Consensus 124 ~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~-~~~~~~~~~~~~~---~~~~~G 199 (321)
...+.+...++....++.+.+|+|++....+ .+ ...+++|.|+|+||++...+. ++....+| +.++ ..+.+|
T Consensus 503 ~~~~~p~~~~~~e~~vve~~dG~L~~~~R~~--~G-~~~v~~S~DgG~TWt~~~~~~~L~~p~~g~-~~s~i~~~~~~dG 578 (679)
T 2sli_A 503 VEADNLTGGATAEAQIVEMPDGSLKTYLRTG--SN-CIAEVTSIDGGETWSDRVPLQGISTTSYGT-QLSVINYSQPIDG 578 (679)
T ss_dssp EECCCCCSCCCCCEEEEECTTSCEEEEECCS--SS-SCEEEEESSTTSSCCCCEECTTCCCCSSCC-CCEEEEEEEEETT
T ss_pred CccCCCCCCCccceEEEEeCCCEEEEEEEeC--CC-CEEEEEEcCCCcCCCCCccccCCCCCCCce-eEEEEEeeecCCC
Confidence 7754432234445556677899988765432 12 457899999999999876331 22211122 2222 234688
Q ss_pred eEEEEEeecC---C--CCcEEEEEeccCC--------cCCCCCccCCCCCC--CCceeEEEcCCCcEEEEEeC
Q 020796 200 TLRVLMRSFN---G--IGRVCMSESCDGG--------LTWSYAKPTQLLNP--NSGIDGVKLKDGRLLLAYNT 257 (321)
Q Consensus 200 ~l~~~~r~~~---~--~~~~~~~~S~D~G--------~tWs~~~~~~~~~~--~~~~~~~~~~~g~~~lv~~~ 257 (321)
+.+++++... . ...++++.|.|+| +||+....+. +.+ .+...++.+++|+++++|+.
T Consensus 579 r~vll~~~p~~~~~R~~~~l~ls~S~D~G~t~~~~~~~tW~~~~~i~-~g~~~~~Ys~L~~~~DG~l~llye~ 650 (679)
T 2sli_A 579 KPAIILSSPNATNGRKNGKIWIGLVNDTGNTGIDKYSVEWKYSYAVD-TPQMGYSYSCLAELPDGQVGLLYEK 650 (679)
T ss_dssp EEEEEEEEECCSSSSBCEEEEEEEEEECSCCGGGSEEEEEEEEEESS-CTTSBCCCEEEEECSSSCEEEEEEC
T ss_pred CEEEEEEcCCCCCceeeEEEEEEEEcCCCccccccccCCcccceeec-CCCCCccCceEEEeCCCEEEEEEEC
Confidence 8877775421 1 2357888899999 8898654332 111 22345677889999999863
|
| >3sil_A Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1.05A {Salmonella typhimurium} SCOP: b.68.1.1 PDB: 1dim_A* 1dil_A* 2sil_A 2sim_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-13 Score=120.08 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=120.7
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCCCCCCC----C-CCccEEcc-CC--eE
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPPGILGP----S-KNKPILLE-NG--LL 147 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~----~-~~~~~~~~-~G--~~ 147 (321)
+++.|.|+..++|.|++|+..... .+.....+.+|+|+|+||+++..+..+.... . ++.+++.. .| +|
T Consensus 32 s~RiPsLv~~~~G~llA~aEar~~~~~d~~~~~i~~~~std~g~TW~~~~vl~~~~~~~~~~~v~~Pt~vv~~~tG~~~I 111 (379)
T 3sil_A 32 YFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSKLSRVMDPTCIVANIQGRETI 111 (379)
T ss_dssp EEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEEEEECCCCSCTTTCEEEEEEEEEEEETTEEEE
T ss_pred EEEccEEEEcCCCEEEEEEEeeecCCCCcccceEEEEEeccCCCCccccEEEEecCCCccceeEecCceEEeCCCCCeeE
Confidence 567799988889999999875322 1223456889999999999987776432111 1 11223333 37 77
Q ss_pred EEee--eccc------------CCCCcEEEEEECCCCceeEEeeceec------CCCCccee-ee-eEEEcCCCeEEEEE
Q 020796 148 LCGS--SVES------------WNSWGSWMEVTVDAGRSWRKYGPIYI------PNESLSVI-QP-VPFHTANRTLRVLM 205 (321)
Q Consensus 148 ~~~~--~~~~------------~~~~~~~~~~S~D~G~tW~~~~~~~~------~~~~~~~~-~~-~~~~~~~G~l~~~~ 205 (321)
++.+ |... .+.++..+.+|+|+|.||+.+. +.. +..-..++ .+ .-+++.+|+|+.-.
T Consensus 112 ~llvg~~~~~~~~~~~~~~~~~~~~~~l~lv~S~D~G~tWs~~~-~~~~~~~~~~~~~~~~~~g~G~GI~l~~G~Lv~P~ 190 (379)
T 3sil_A 112 LVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVE-TNIHDIVTKNGTISAMLGGVGSGLQLNDGKLVFPV 190 (379)
T ss_dssp EEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEEC-CSHHHHHHHHCSEEEEEECSEECEECTTSCEEEEE
T ss_pred EEEEEeecCCCcceeeccccCCCCceeEEEEEccCCCCcCCCCc-ccccccccccceeeeecCCCCceEEEcCCcEEEEE
Confidence 5432 2111 0235678899999999999864 211 01000111 11 23578899988765
Q ss_pred eec---C--CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 206 RSF---N--GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 206 r~~---~--~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
... . +....++.+|+| |+||.....+.. ..+..+.++.+ +|+|+|..+.. ....++.|.|+|.||+++.
T Consensus 191 ~~~~~~~~~~~~~s~~iyS~D-G~tW~~~~~~~~-~~~~ep~vvE~-dG~L~m~~R~~--g~r~v~~S~D~G~tWt~~~ 264 (379)
T 3sil_A 191 QMVRTKNITTVLNTSFIYSTD-GITWSLPSGYCE-GFGSENNIIEF-NASLVNNIRNS--GLRRSFETKDFGKTWTEFP 264 (379)
T ss_dssp EEEECTTSSCSEEEEEEEESS-SSSEECCSCCEE-CTTCCEEEEEE-TTEEEEEECCS--SBCBCEEESSSSSCCEECT
T ss_pred EEeeccCCCCCEEEEEEEcCC-CCCeEECCCCCC-ccCCCCEEEEE-CCEEEEEEEeC--CCEEEEEEcCCCccCCCCc
Confidence 421 1 112356677999 999998654321 12334567777 89999988762 2235789999999999874
|
| >3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=101.09 Aligned_cols=217 Identities=16% Similarity=0.182 Sum_probs=150.5
Q ss_pred CcccceeeeeeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCCCcCCcEEccCCCCCC
Q 020796 2 KKDCGIKGLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDGRWQSPIIADEEPNVP 80 (321)
Q Consensus 2 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~ 80 (321)
..-..|+--|-..-+|++ .+-|.-.+-.+.||.|++.|...++ .|..|..+++++..+|-|+.|.++....+..
T Consensus 2 ntyfdiphrlvgkalyes-----yydhfgqmdilsdgslyliyrratehvggsdgrvvfskleggiwsaptivaqaggqd 76 (438)
T 3h6j_A 2 NTYFDIPHRLVGKALYES-----YYDHFGQMDILSDGSLYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQAGGQD 76 (438)
T ss_dssp CTTCCCCCCCTTCEECSS-----SEEEEEEEEECTTSCEEEEEEEESCCSTTSCCEEEEEEEETTEECCCEEEECCTTCC
T ss_pred CccccCcHHHHhHHHHHH-----HHhhccceeeecCCeEEEEEeechhccCCCCceEEEEeccCccccCcchhhhhcCcc
Confidence 333445555666677777 4667778888999999999976554 4667888999999999999999988766555
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCC--CCCCccEEccCCeEEEeeecccCCC
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILG--PSKNKPILLENGLLLCGSSVESWNS 158 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g--~~~~~~~~~~~G~~~~~~~~~~~~~ 158 (321)
+.+..--.+|.|+|...-+.- .. -...+..|+|.|.||-....+..+-.. ...++..+. .-+.++|.|......
T Consensus 77 frdvaggtmpsgrivaastvy--et-gevkvyvsddsgvtwvhkftlarggadynfahgksfqv-garyviplyaatgvn 152 (438)
T 3h6j_A 77 FRDVAGGTMPSGRIVAASTVY--ET-GEVKVYVSDDSGVTWVHKFTLARGGADYNFAHGKSFQV-GARYVIPLYAATGVN 152 (438)
T ss_dssp EEEEEEEECTTSCEEEEEEET--TT-TEEEEEEESSTTSSCEEEEEECCTTSSEEEECSBCEEE-TTEEEEEEEEEETTE
T ss_pred hhhhcCCcCCCccEEEEEEEE--ec-ccEEEEEecCCCcEEEEEEEeecCCcccccccCceeee-cceEEEEeeeecCcc
Confidence 555444467999998765431 11 134578999999999888777654211 122333332 235556655443334
Q ss_pred CcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCC-CCcEEEEEeccCCcCCCCC
Q 020796 159 WGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNG-IGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 159 ~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~-~~~~~~~~S~D~G~tWs~~ 229 (321)
+....+.|.|+|+||.+...+-..+.+ ..|.+.+...||.|+++.|...+ .+.+....|-|+|-||+..
T Consensus 153 yelkwlessdggetwgegstiysgntp--ynetsylpvgdgvilavarvgsgaggalrqfislddggtwtdq 222 (438)
T 3h6j_A 153 YELKWLESSDGGETWGEGSTIYSGNTP--YNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDGGTWTDQ 222 (438)
T ss_dssp EEEEEEEESSSSSSCEEEEEEEEESSC--EEEEEEEEEETTEEEEEEEETTSTTSCEEEEEESSTTSSCEEE
T ss_pred eEEEEEecCCCCccccCCceeecCCCC--CCccceeecCCcEEEEEEeecCCcchhhheeEEecCCCceecC
Confidence 567889999999999998766432222 34667777789999999988653 3456667789999999874
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-10 Score=101.06 Aligned_cols=181 Identities=18% Similarity=0.247 Sum_probs=101.2
Q ss_pred EEEeCCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCC
Q 020796 59 LQTFKDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKN 137 (321)
Q Consensus 59 ~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~ 137 (321)
+...++| ||++.......+.. .... +...+ +++++. +. .+.+.+|+|+|+||+...... ...+.. .
T Consensus 59 ~~s~DgG~tW~~~~~~~~~~~~-~~~~-i~~~~-~~~~~~---g~-----~g~i~~S~DgG~tW~~~~~~~-~~~~~~-~ 125 (327)
T 2xbg_A 59 METRDGGQTWEPRTLVLDHSDY-RFNS-VSFQG-NEGWIV---GE-----PPIMLHTTDGGQSWSQIPLDP-KLPGSP-R 125 (327)
T ss_dssp EEESSTTSSCEECCCCCSCCCC-EEEE-EEEET-TEEEEE---EE-----TTEEEEESSTTSSCEECCCCT-TCSSCE-E
T ss_pred EEeCCCCCCCeECCCCCCCCCc-cEEE-EEecC-CeEEEE---EC-----CCeEEEECCCCCCceECcccc-CCCCCe-E
Confidence 3334456 99886422211221 1122 33343 666653 21 236889999999998765321 110111 1
Q ss_pred ccEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEE
Q 020796 138 KPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMS 217 (321)
Q Consensus 138 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~ 217 (321)
.+....++++++... ...+++|+|+|+||+.... ...+ .. ..+...++++++++... +.++
T Consensus 126 ~i~~~~~~~~~~~~~-------~g~v~~S~DgG~tW~~~~~-~~~~---~~--~~~~~~~~~~~~~~g~~----G~~~-- 186 (327)
T 2xbg_A 126 LIKALGNGSAEMITN-------VGAIYRTKDSGKNWQALVQ-EAIG---VM--RNLNRSPSGEYVAVSSR----GSFY-- 186 (327)
T ss_dssp EEEEEETTEEEEEET-------TCCEEEESSTTSSEEEEEC-SCCC---CE--EEEEECTTSCEEEEETT----SSEE--
T ss_pred EEEEECCCCEEEEeC-------CccEEEEcCCCCCCEEeec-CCCc---ce--EEEEEcCCCcEEEEECC----CcEE--
Confidence 123345677665421 2358899999999998641 1111 11 24455677888765432 4555
Q ss_pred EeccC-CcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEE-cCCCCCCCcce
Q 020796 218 ESCDG-GLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALS-KDDGDSWHDAL 279 (321)
Q Consensus 218 ~S~D~-G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S-~D~G~tW~~~~ 279 (321)
+|.|+ |++|++... +.+..-..+...++++++++.... .+++| .|+|++|+...
T Consensus 187 ~S~d~gG~tW~~~~~---~~~~~~~~~~~~~~g~~~~~~~~G-----~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 187 STWEPGQTAWEPHNR---TTSRRLHNMGFTPDGRLWMIVNGG-----KIAFSDPDNSENWGELL 242 (327)
T ss_dssp EEECTTCSSCEEEEC---CSSSCEEEEEECTTSCEEEEETTT-----EEEEEETTEEEEECCCB
T ss_pred EEeCCCCCceeECCC---CCCCccceeEECCCCCEEEEeCCc-----eEEEecCCCCCeeEecc
Confidence 46676 899987532 222222344456778988887543 46678 47799999764
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-10 Score=113.16 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=120.5
Q ss_pred CccccceEEEecCC--cEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEE-cc----CCCC-CCCCCeEEEEeC--CCc
Q 020796 25 KSCHASTIVEVDKG--HFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPII-AD----EEPN-VPMWNPVLFKLP--SNG 93 (321)
Q Consensus 25 ~~~~~p~l~~~~~g--~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~-~~----~~~~-~~~~~p~l~~~~--~G~ 93 (321)
...|++.|+..|.+ .+|+. .. .| .|+. ..++| ||++... +. +... .......++.++ .++
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~-~~---~g----gv~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~ 89 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYAR-TD---IG----GTYR-WNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDR 89 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEE-ES---SS----CEEE-EETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTC
T ss_pred CCCceeEEEeCCCCCCEEEEE-ec---cC----cEEE-ECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCE
Confidence 34578888888754 45544 11 11 2443 33445 9998653 21 1010 112234555665 356
Q ss_pred EEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCC----CCCCC-CccEEcc--CCeEEEeeecccCCCCcEEEEEE
Q 020796 94 LLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGI----LGPSK-NKPILLE--NGLLLCGSSVESWNSWGSWMEVT 166 (321)
Q Consensus 94 l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~----~g~~~-~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~S 166 (321)
+|+.-.. .........+.+|+|+|+||++... +... .+... ..+.+.+ .+.+++... ...+++|
T Consensus 90 ~~~~~g~-~~~~~~~~~i~~S~DgG~TW~~~~~-~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~-------~~~l~~S 160 (763)
T 3a0f_A 90 LYLAQGD-YVQWDPWAAFLVSDDRGKTFKQYRS-PVPMGANDMGRNGGERLAVNPHWTDELWFGSR-------TQGLWRS 160 (763)
T ss_dssp EEEEECS-CTTTCSCCEEEEESSTTSSCEEEEC-SSCCCTTSTTTTSBCCEEECTTSTTCEEEECS-------SSCEEEE
T ss_pred EEEEecc-cccCCCCceEEEECCCCCCceeccC-CcccCccccCccccceEEECCCCCCEEEEEeC-------CCcEEEE
Confidence 7664211 0011223569999999999987653 2111 11110 1222222 255555421 2358899
Q ss_pred CCCCceeEEeeceecCC-CCcceeeeeEEEc--CCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCC--------
Q 020796 167 VDAGRSWRKYGPIYIPN-ESLSVIQPVPFHT--ANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLL-------- 235 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~-~~~~~~~~~~~~~--~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~-------- 235 (321)
+|+|+||++...+.... ...+. ..+... ..+++++..... + .+.+|.|+|+||+........
T Consensus 161 ~DgG~TW~~~~~~~~~~~~~~~~--~~i~~~p~~~~~~~~~~~~~---g--~v~~S~DgG~tW~~~~~~~~~~~~~~~~~ 233 (763)
T 3a0f_A 161 TDRAQTWSRMNQLPDSSTYGIGI--ISVIFDPKNVGTAYVASHAV---G--GLWVTWDGGANWSQVGGQPTQWSDWTKSI 233 (763)
T ss_dssp SSTTSSCEECTTSCCCSCTTTCE--EEEEECSSSTTCEEEEESST---T--CEEEESSSSSSCEECTTCCCSCCHHHHHH
T ss_pred CCCCcCccccccCcccCCCccce--EEEEECCCCCCEEEEEEeCC---C--eEEEECCCCCCccccCCCccccccccccc
Confidence 99999999875321100 01122 233332 234676655432 2 345789999999975421100
Q ss_pred ----------CCCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCccee
Q 020796 236 ----------NPNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDALT 280 (321)
Q Consensus 236 ----------~~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~~ 280 (321)
.......+...+++++++++.+. ....-.+++|.|+|++|+....
T Consensus 234 ~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 234 VAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp HHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCT
T ss_pred cccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCC
Confidence 01111223334578999998531 1223478889999999988653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-10 Score=100.66 Aligned_cols=178 Identities=17% Similarity=0.238 Sum_probs=99.7
Q ss_pred CCC-CcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEE
Q 020796 63 KDG-RWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPIL 141 (321)
Q Consensus 63 ~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~ 141 (321)
++| ||+........+... -.++..+++++++. . . .+.+++|+|+|+||+......+.. + ..+..
T Consensus 106 DgG~tW~~~~~~~~~~~~~---~~i~~~~~~~~~~~-~--~-----~g~v~~S~DgG~tW~~~~~~~~~~---~-~~~~~ 170 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSP---RLIKALGNGSAEMI-T--N-----VGAIYRTKDSGKNWQALVQEAIGV---M-RNLNR 170 (327)
T ss_dssp STTSSCEECCCCTTCSSCE---EEEEEEETTEEEEE-E--T-----TCCEEEESSTTSSEEEEECSCCCC---E-EEEEE
T ss_pred CCCCCceECccccCCCCCe---EEEEEECCCCEEEE-e--C-----CccEEEEcCCCCCCEEeecCCCcc---e-EEEEE
Confidence 346 999754322112211 12333456776653 1 1 234889999999998764321111 1 11223
Q ss_pred ccCCeEEEeeecccCCCCcEEEEEECCC-CceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEe-
Q 020796 142 LENGLLLCGSSVESWNSWGSWMEVTVDA-GRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSES- 219 (321)
Q Consensus 142 ~~~G~~~~~~~~~~~~~~~~~~~~S~D~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S- 219 (321)
.++|++++... ...+++|.|+ |++|+... . +..... ..++..++|+++++... +.++ +|
T Consensus 171 ~~~~~~~~~g~-------~G~~~~S~d~gG~tW~~~~-~---~~~~~~--~~~~~~~~g~~~~~~~~----G~~~--~s~ 231 (327)
T 2xbg_A 171 SPSGEYVAVSS-------RGSFYSTWEPGQTAWEPHN-R---TTSRRL--HNMGFTPDGRLWMIVNG----GKIA--FSD 231 (327)
T ss_dssp CTTSCEEEEET-------TSSEEEEECTTCSSCEEEE-C---CSSSCE--EEEEECTTSCEEEEETT----TEEE--EEE
T ss_pred cCCCcEEEEEC-------CCcEEEEeCCCCCceeECC-C---CCCCcc--ceeEECCCCCEEEEeCC----ceEE--Eec
Confidence 45677664421 2347888887 89999863 1 111122 24455678888775432 4444 46
Q ss_pred ccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 220 CDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 220 ~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
.|+|+||+......++....-..+...++++++++.... .+++|.|+|++|+...
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g-----~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG-----ALLCSQDGGQTWQQDV 286 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT-----CEEEESSTTSSCEECG
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC-----eEEEeCCCCcccEEcC
Confidence 588999997542112221111233444568888876532 4688999999998754
|
| >1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-10 Score=105.99 Aligned_cols=197 Identities=17% Similarity=0.181 Sum_probs=115.8
Q ss_pred CCCCCeEEEEeCCCcEEEEEEecccc----CCceeEEEEecCCCCCCCCCccCCCCCCC---CCCCccEEccCCeEEEee
Q 020796 79 VPMWNPVLFKLPSNGLLLFYKIGQEV----QKWSGCMKRSYNKGVTWSEREQLPPGILG---PSKNKPILLENGLLLCGS 151 (321)
Q Consensus 79 ~~~~~p~l~~~~~G~l~l~~~~~~~~----~~~~~~~~~S~D~G~TWs~~~~l~~~~~g---~~~~~~~~~~~G~~~~~~ 151 (321)
.+++.|.|+.. +|.|++++...... ....+.+.+|.|+|.||+.+..+...... ....+..+...|+|++..
T Consensus 46 ~SfRiPSLV~v-~G~LlA~AEar~~~~~d~~~~~Ivs~rS~D~g~tWst~v~v~~~~~~~~~~v~~PTtVv~gg~I~LL~ 124 (648)
T 1ms9_A 46 HSFRLPALVNV-DGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVIVKGNKLYVLV 124 (648)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEEEEECCCCSSTTCEEEEEEEEEETTEEEEEE
T ss_pred EEEeccEEEee-CCEEEEEEEEeecCCCCCCcceeEEEEecCCCCceeeeEEEecCCcccceEeeccceeeecccEEEEE
Confidence 35677999876 99999988753221 22235678899999999988766542211 111122233567876543
Q ss_pred --ecccC---------CCCcEE-----EEEECCCCc-----eeEEeeceecC-CCC-c--ceeee-----eEEEcCCCeE
Q 020796 152 --SVESW---------NSWGSW-----MEVTVDAGR-----SWRKYGPIYIP-NES-L--SVIQP-----VPFHTANRTL 201 (321)
Q Consensus 152 --~~~~~---------~~~~~~-----~~~S~D~G~-----tW~~~~~~~~~-~~~-~--~~~~~-----~~~~~~~G~l 201 (321)
|.... ..+... +..|+|+|+ +|+.+..+... +.. . ...+. .-+++.||+|
T Consensus 125 g~y~~~~~~~~~~~~~~~~~llLVkG~V~~S~D~Gktsk~ItWs~p~~L~~~~~~~~~~~~~~~~~~GgGsGI~m~dGtL 204 (648)
T 1ms9_A 125 GSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPAEMEGMHTNQFLGGAGVAIVASNGNL 204 (648)
T ss_dssp EEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECGGGCCSBSSSSBEEEEEECSEECEECTTSCE
T ss_pred EeecCCcccccccccCCCcceEEEEeeeccccccccccceeeccCcccCccccccccccceeEEEEecCCceEEecCCcE
Confidence 21110 011222 456899998 79976544211 110 0 11111 2356889999
Q ss_pred EEEEeec--CCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 202 RVLMRSF--NGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 202 ~~~~r~~--~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
+.-.... .+....++.+|+|+|+||.....+. +..+....++.. +|+|+|..+.... ...++.|.|.|.||+++.
T Consensus 205 VfPv~~~~~~g~~~s~iiySdD~G~TW~ls~~~~-~~gc~EpsVvEw-dG~Lmm~~R~~~g-~R~Vy~S~D~G~TWte~~ 281 (648)
T 1ms9_A 205 VYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRS-AFGCSEPVALEW-EGKLIINTRVDYR-RRLVYESSDMGNTWLEAV 281 (648)
T ss_dssp EEEEEEEETTCCEEEEEEEESSTTSSCEECSCCC-CTTEEEEEEEEE-TTEEEEEEEETTS-CCCEEEESSTTSSCEECT
T ss_pred EEEEEEEcccccceeeEEEecCCCCCEEECCCCC-CCCccceEEEEE-CCEEEEEEEccCC-cEEEEEecCCCccccccc
Confidence 8755332 2222345678999999999765432 111223566777 7998887764321 124788999999998765
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=107.36 Aligned_cols=232 Identities=19% Similarity=0.145 Sum_probs=118.1
Q ss_pred ccceEEEec--CCcEEEEEecCCCCCCCCcEEEEEEeC-CC-CcCCcEEccCC----CCCCCCCeEEEEeCC--CcEEEE
Q 020796 28 HASTIVEVD--KGHFLVAYFGGSCEGAPDVKIWLQTFK-DG-RWQSPIIADEE----PNVPMWNPVLFKLPS--NGLLLF 97 (321)
Q Consensus 28 ~~p~l~~~~--~g~l~~~~~~~~~~g~~~~~i~~s~s~-~G-tWs~~~~~~~~----~~~~~~~p~l~~~~~--G~l~l~ 97 (321)
..+.|+..+ .+++|++--..... .....| -+|+ +| ||++....... ++..... .+...+. +.+|+.
T Consensus 76 ~~~~ia~dp~~~~~~~~~~g~~~~~-~~~~~i--~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~-~l~v~p~~~~~v~a~ 151 (763)
T 3a0f_A 76 GTESIALDPHNPDRLYLAQGDYVQW-DPWAAF--LVSDDRGKTFKQYRSPVPMGANDMGRNGGE-RLAVNPHWTDELWFG 151 (763)
T ss_dssp SEEEEECCTTCTTCEEEEECSCTTT-CSCCEE--EEESSTTSSCEEEECSSCCCTTSTTTTSBC-CEEECTTSTTCEEEE
T ss_pred ceeEEEECCCCCCEEEEEecccccC-CCCceE--EEECCCCCCceeccCCcccCccccCccccc-eEEECCCCCCEEEEE
Confidence 356666555 35777753111111 122334 3444 35 99987632211 1111111 2445543 566653
Q ss_pred EEeccccCCceeEEEEecCCCCCCCCCccCCCCCCC-CCCCccEEcc-C-CeEEEeeecccCCCCcEEEEEECCCCceeE
Q 020796 98 YKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILG-PSKNKPILLE-N-GLLLCGSSVESWNSWGSWMEVTVDAGRSWR 174 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g-~~~~~~~~~~-~-G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~ 174 (321)
.. ...+++|+|+|+||++...++..... .....+...+ + +++++.... + . .+++|+|+|+||+
T Consensus 152 ---~~-----~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~----~-g-~v~~S~DgG~tW~ 217 (763)
T 3a0f_A 152 ---SR-----TQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHA----V-G-GLWVTWDGGANWS 217 (763)
T ss_dssp ---CS-----SSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESS----T-T-CEEEESSSSSSCE
T ss_pred ---eC-----CCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeC----C-C-eEEEECCCCCCcc
Confidence 11 12478999999999987654432110 0001111211 2 456655331 1 1 5899999999999
Q ss_pred EeeceecCC---------------CCcceeeeeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCCccCCC--
Q 020796 175 KYGPIYIPN---------------ESLSVIQPVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYAKPTQL-- 234 (321)
Q Consensus 175 ~~~~~~~~~---------------~~~~~~~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~~~~~~-- 234 (321)
......... ...+.+...++..++|+|++.+.... +...-.+.+|.|+|+||+...+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~ 297 (763)
T 3a0f_A 218 QVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGA 297 (763)
T ss_dssp ECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSS
T ss_pred ccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCC
Confidence 864221000 00122222334445789988875421 1112344678999999997653211
Q ss_pred ---CC-------CCCceeEEEc-CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcc
Q 020796 235 ---LN-------PNSGIDGVKL-KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 235 ---~~-------~~~~~~~~~~-~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~ 278 (321)
|. +..++..+.. ..++++++..... ....+++|.|+|+||+..
T Consensus 298 ~~~~~~~~~~~~~~gg~~~i~v~~~~~v~~~~~~~~-~~~~l~~S~DgG~tW~~~ 351 (763)
T 3a0f_A 298 NTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLDAN-GEDSVYLSRDAGNSWKDL 351 (763)
T ss_dssp CEESCCCCCTTSCCCEEEEEEECSTBCEEEEEESCT-TSCCEEEESBTTSSEEEH
T ss_pred ccccccccccccccCCceeEEEcCCCeEEEEecCCC-CCCCEEEECCCCCCcccC
Confidence 00 0012222322 3467777665211 223688999999999987
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=100.27 Aligned_cols=169 Identities=15% Similarity=0.194 Sum_probs=88.4
Q ss_pred EEEEeC--CCcEEEEEEeccccCCceeEEEEecCCCCCCCCCcc-CCCCCC-------CCCCCccEEccC--CeEEEeee
Q 020796 85 VLFKLP--SNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQ-LPPGIL-------GPSKNKPILLEN--GLLLCGSS 152 (321)
Q Consensus 85 ~l~~~~--~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~-l~~~~~-------g~~~~~~~~~~~--G~~~~~~~ 152 (321)
.|+.++ .++||+... .+.+.+|+|+|+||+.... +..... +.....+.+.++ +.+++..
T Consensus 181 ~i~~d~~~~~~l~vg~~--------~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~- 251 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMS--------SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN- 251 (394)
T ss_dssp EEEECTTCTTCEEEEEE--------TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-
T ss_pred EEEECCCCCCEEEEEEC--------CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-
Confidence 345554 356776532 1248899999999986542 111100 100011122222 5555532
Q ss_pred cccCCCCcEEEEEECCCCceeEEeeceecCCC--CcceeeeeEEEc--CCCeEEEEEeecC-------CCCcEEEEEecc
Q 020796 153 VESWNSWGSWMEVTVDAGRSWRKYGPIYIPNE--SLSVIQPVPFHT--ANRTLRVLMRSFN-------GIGRVCMSESCD 221 (321)
Q Consensus 153 ~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~--~~~~~~~~~~~~--~~G~l~~~~r~~~-------~~~~~~~~~S~D 221 (321)
...+++|+|+|++|+.... .++.. ..+ ..+... .+++|++..+... ..+...+.+|.|
T Consensus 252 -------~~gl~~s~D~G~tW~~~~~-~l~~~~~~~~---~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~D 320 (394)
T 3b7f_A 252 -------HCGIYRMDRREGVWKRIGD-AMPREVGDIG---FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRD 320 (394)
T ss_dssp -------TTEEEEEETTTTEEECGGG-GSCTTTCSCE---EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESS
T ss_pred -------CCeEEEeCCCCCcceECCC-CCCCCCccce---EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECC
Confidence 1238899999999998642 12211 111 134443 4567877653211 012233457999
Q ss_pred CCcCCCCCccCCCCCCCC-----ceeEEEc--CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 222 GGLTWSYAKPTQLLNPNS-----GIDGVKL--KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 222 ~G~tWs~~~~~~~~~~~~-----~~~~~~~--~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
+|+||+.... .+|.... +..+... ..+.+++..... .+++|.|+|++|+...
T Consensus 321 gG~tW~~~~~-glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g-----~l~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 321 AGESWQRQDR-GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGG-----EIWASADEGEHWQCIA 379 (394)
T ss_dssp TTSCCEEECB-TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTS-----CEEEESSTTSBCEEEE
T ss_pred CCCCceECCC-CCCCccccceEEEEEEEECCCCCCEEEEEeCCC-----eEEEECCCCCCceEcc
Confidence 9999987542 2343211 1122222 224555543221 4789999999999764
|
| >3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-08 Score=81.71 Aligned_cols=193 Identities=20% Similarity=0.254 Sum_probs=119.5
Q ss_pred EEeCCCcEEEEEEec-cccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCc--cEEccCCeEEEeeecccCCCCcEEE
Q 020796 87 FKLPSNGLLLFYKIG-QEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNK--PILLENGLLLCGSSVESWNSWGSWM 163 (321)
Q Consensus 87 ~~~~~G~l~l~~~~~-~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~--~~~~~~G~~~~~~~~~~~~~~~~~~ 163 (321)
-...+|.|++.|... ++.+.-++.+..|+-.|.-|+.|..+...- |..... .-.++.|+++.+... +....+.+
T Consensus 28 dilsdgslyliyrratehvggsdgrvvfskleggiwsaptivaqag-gqdfrdvaggtmpsgrivaastv--yetgevkv 104 (438)
T 3h6j_A 28 DILSDGSLYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQAG-GQDFRDVAGGTMPSGRIVAASTV--YETGEVKV 104 (438)
T ss_dssp EECTTSCEEEEEEEESCCSTTSCCEEEEEEEETTEECCCEEEECCT-TCCEEEEEEEECTTSCEEEEEEE--TTTTEEEE
T ss_pred eeecCCeEEEEEeechhccCCCCceEEEEeccCccccCcchhhhhc-CcchhhhcCCcCCCccEEEEEEE--EecccEEE
Confidence 345799999999853 334555778889988899999998876421 111111 136788998765322 12336789
Q ss_pred EEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEE-EEeecCCCCcEEEEEeccCCcCCCCCccCCCC-CCCCce
Q 020796 164 EVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRV-LMRSFNGIGRVCMSESCDGGLTWSYAKPTQLL-NPNSGI 241 (321)
Q Consensus 164 ~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~-~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~-~~~~~~ 241 (321)
++|+|.|.||-+.-.+.-.+....+.+-.-.+... +.++ ++....-...+..-.|.|+|+||.+-..+-.. .|....
T Consensus 105 yvsddsgvtwvhkftlarggadynfahgksfqvga-ryviplyaatgvnyelkwlessdggetwgegstiysgntpynet 183 (438)
T 3h6j_A 105 YVSDDSGVTWVHKFTLARGGADYNFAHGKSFQVGA-RYVIPLYAATGVNYELKWLESSDGGETWGEGSTIYSGNTPYNET 183 (438)
T ss_dssp EEESSTTSSCEEEEEECCTTSSEEEECSBCEEETT-EEEEEEEEEETTEEEEEEEEESSSSSSCEEEEEEEEESSCEEEE
T ss_pred EEecCCCcEEEEEEEeecCCcccccccCceeeecc-eEEEEeeeecCcceEEEEEecCCCCccccCCceeecCCCCCCcc
Confidence 99999999998865443333333332222233332 3332 22222112356667899999999875433111 121224
Q ss_pred eEEEcCCCcEEEEEeCC--CCCeEEEEEEcCCCCCCCcceeecc
Q 020796 242 DGVKLKDGRLLLAYNTV--SRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 242 ~~~~~~~g~~~lv~~~~--~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
..+...||.++.+.+-. ....|.-.+|.|||.||.....+..
T Consensus 184 sylpvgdgvilavarvgsgaggalrqfislddggtwtdqgnvta 227 (438)
T 3h6j_A 184 SYLPVGDGVILAVARVGSGAGGALRQFISLDDGGTWTDQGNVTA 227 (438)
T ss_dssp EEEEEETTEEEEEEEETTSTTSCEEEEEESSTTSSCEEEEECEE
T ss_pred ceeecCCcEEEEEEeecCCcchhhheeEEecCCCceecCCceEe
Confidence 45666788887776532 3456788899999999998876654
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=100.77 Aligned_cols=229 Identities=14% Similarity=0.141 Sum_probs=113.5
Q ss_pred ccccceEEEecC--CcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCCC-CCCCCeEEEEeCC--CcEEEEEE
Q 020796 26 SCHASTIVEVDK--GHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEPN-VPMWNPVLFKLPS--NGLLLFYK 99 (321)
Q Consensus 26 ~~~~p~l~~~~~--g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~~-~~~~~p~l~~~~~--G~l~l~~~ 99 (321)
..+++.|+..|. +.+|+.- . ...|+.+ .++| ||++......... .....-.++.++. +++|+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~-~-------~ggv~rS-~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~- 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYART-D-------IGGAYRW-DAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ- 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEE-S-------SSCEEEE-ETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE-
T ss_pred CCcEEEEEECCCCCCEEEEEe-c-------CCCEEEe-cCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe-
Confidence 347888888774 5566541 1 1124433 3445 9987321110000 0111123455653 3455532
Q ss_pred ecccc-CCceeEEEEecCCCCCCCCCccCCC-C--CCCC-CCCccEEcc-C-CeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 100 IGQEV-QKWSGCMKRSYNKGVTWSEREQLPP-G--ILGP-SKNKPILLE-N-GLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 100 ~~~~~-~~~~~~~~~S~D~G~TWs~~~~l~~-~--~~g~-~~~~~~~~~-~-G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
+... ..+ +.+.+|+|+|+||++...-.. + ..+. ....+.+.+ + +++++... ...+++|+|+|+|
T Consensus 84 -g~~~~~~~-~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~-------~~gl~~S~DgG~T 154 (789)
T 1sqj_A 84 -GRYVGDEW-AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR-------TEGIWKSSDRAKT 154 (789)
T ss_dssp -CSCTTSSC-CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS-------SSCEEEESSTTSS
T ss_pred -CccCCCcc-cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec-------cCCEEEECCCCcc
Confidence 2111 112 578999999999987643111 1 0111 001122221 2 34444321 1348899999999
Q ss_pred eEEeeceec-CCCCcceeeeeEEEcC-C-CeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCC----------CCCC--
Q 020796 173 WRKYGPIYI-PNESLSVIQPVPFHTA-N-RTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQ----------LLNP-- 237 (321)
Q Consensus 173 W~~~~~~~~-~~~~~~~~~~~~~~~~-~-G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~----------~~~~-- 237 (321)
|++...... .....+. ..+...+ + +.+++..... ..+ .+|.|+|+||+...... ++..
T Consensus 155 W~~~~~~~~~~~~~~~~--~~i~~~p~~~~~~~~~~~~~---~~v--~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~ 227 (789)
T 1sqj_A 155 WTNVTSIPDAFTNGIGY--TSVIFDPERNGTIYASATAP---QGM--YVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKP 227 (789)
T ss_dssp CEEETTSCCCCSTTTCE--EEEEECTTSTTCEEEEESST---TCE--EEESSTTSSCEECTTCCCSCCHHHHHTSTTCCC
T ss_pred cCCCccCccccCCCCCe--EEEEECCCCCCEEEEEEcCC---CeE--EEEcCCCcCcccCCCCcCccccccccccCcccc
Confidence 998652210 0111222 2333322 2 4566654321 334 46899999999754211 1100
Q ss_pred --CCceeEEEc-CCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCccee
Q 020796 238 --NSGIDGVKL-KDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDALT 280 (321)
Q Consensus 238 --~~~~~~~~~-~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~~ 280 (321)
.....+... .++++++++... ....-.+++|.|+|++|+....
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 228 ASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITP 277 (789)
T ss_dssp SSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCC
T ss_pred cccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcC
Confidence 001222221 268888887532 1123368899999999998754
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-08 Score=89.33 Aligned_cols=224 Identities=15% Similarity=0.145 Sum_probs=111.0
Q ss_pred ccceEEEec--CCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc---cCCCCC----CC-CCeEEEEeC---CCc
Q 020796 28 HASTIVEVD--KGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA---DEEPNV----PM-WNPVLFKLP---SNG 93 (321)
Q Consensus 28 ~~p~l~~~~--~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~---~~~~~~----~~-~~p~l~~~~---~G~ 93 (321)
+..+|+..+ ++.||++-..+ .....|+.+ .++| +|++.... ...+.. .. ....++.++ .++
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~g----~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 130 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAARTG----HLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGT 130 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC------CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTC
T ss_pred ceEEEEECCCCCCeEEEEecCC----CCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCE
Confidence 345677666 67788763221 112234432 2345 99865321 111110 00 111244554 567
Q ss_pred EEEEEEeccccCCceeEEEEecCCCCCCCCCccCC--CCC--------C-CCCCC---ccEEcc--CCeEEEeeecccCC
Q 020796 94 LLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLP--PGI--------L-GPSKN---KPILLE--NGLLLCGSSVESWN 157 (321)
Q Consensus 94 l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~--~~~--------~-g~~~~---~~~~~~--~G~~~~~~~~~~~~ 157 (321)
||+.-. .+.+.+|+|+|+||+....+. +.. . +.... .+.+.+ .+++++...
T Consensus 131 l~~g~~--------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~----- 197 (394)
T 3b7f_A 131 WYAGTS--------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS----- 197 (394)
T ss_dssp EEEEEE--------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-----
T ss_pred EEEEec--------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-----
Confidence 776421 235889999999998764321 100 0 00111 111222 255665432
Q ss_pred CCcEEEEEECCCCceeEEeec-ee---cCCC--CcceeeeeEEEcCC--CeEEEEEeecCCCCcEEEEEeccCCcCCCCC
Q 020796 158 SWGSWMEVTVDAGRSWRKYGP-IY---IPNE--SLSVIQPVPFHTAN--RTLRVLMRSFNGIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 158 ~~~~~~~~S~D~G~tW~~~~~-~~---~~~~--~~~~~~~~~~~~~~--G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~ 229 (321)
...+++|+|+|+||+.... .. ++.. ..+..-..++..++ +.|++.. . +.+ .+|.|+|+||+..
T Consensus 198 --~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~---~gl--~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 198 --SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--H---CGI--YRMDRREGVWKRI 268 (394)
T ss_dssp --TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--T---TEE--EEEETTTTEEECG
T ss_pred --CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--C---CeE--EEeCCCCCcceEC
Confidence 1348999999999997631 10 0100 01111123444443 5665532 1 234 5688999999876
Q ss_pred ccCCCCCC--CCceeEEEc--CCCcEEEEEeCCC--------CCeEEEEEEcCCCCCCCcce
Q 020796 230 KPTQLLNP--NSGIDGVKL--KDGRLLLAYNTVS--------RGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 230 ~~~~~~~~--~~~~~~~~~--~~g~~~lv~~~~~--------r~~l~~~~S~D~G~tW~~~~ 279 (321)
.. .++.. .....+... ..+.+++...... .....+++|.|+|++|+...
T Consensus 269 ~~-~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~ 329 (394)
T 3b7f_A 269 GD-AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD 329 (394)
T ss_dssp GG-GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred CC-CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence 42 23321 112233332 3577777642110 12246789999999998753
|
| >3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-07 Score=90.47 Aligned_cols=185 Identities=15% Similarity=0.116 Sum_probs=95.6
Q ss_pred CCC-CcCCcEEccCCCCCCCCCeEEEEeCC--CcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCCCCCCcc
Q 020796 63 KDG-RWQSPIIADEEPNVPMWNPVLFKLPS--NGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKP 139 (321)
Q Consensus 63 ~~G-tWs~~~~~~~~~~~~~~~p~l~~~~~--G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~ 139 (321)
++| ||++.....+.+..... -.|+.+|. ++++++-. .......+.+++|+|+|+||+... ++-.. . ..+
T Consensus 72 DgG~TW~~v~~~~~~~~~~~~-~~IavdP~dp~~vyvag~--~~~~~~~g~v~rS~DgG~TW~~~~-~p~~~---~-~~l 143 (685)
T 3f6k_A 72 DYGKNFKDITDLINNTFIRTE-FGMAIGPENSGKVVLTAE--VSGGSRGGRIFRSSDFAKNFVQTD-LPFHP---L-TQM 143 (685)
T ss_dssp STTSSCEECGGGGTTCCBCGG-GCEEECSTTCCCEEEEEC--CCTTCSSCEEEEESSTTSSCEEEE-CSSCB---S-SCC
T ss_pred CCCCCceECcCCCCCCcccce-eEEEECCCCCCEEEEEEe--ccCCCCCceEEEECCCCceeEecc-CCCCC---c-eEE
Confidence 346 99875432222221111 13556663 35665421 111112456999999999998754 22110 0 122
Q ss_pred EEcc-CCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC----CCCcE
Q 020796 140 ILLE-NGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN----GIGRV 214 (321)
Q Consensus 140 ~~~~-~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~----~~~~~ 214 (321)
...+ +..+++... ....+++|+|+|+||+.... + .. ... .....+|++...... ..+.+
T Consensus 144 ~~~P~~~~~l~a~~------~~~gly~S~DgG~TW~~i~~----~----v~-~~~-f~~~~~Iy~~~~~~~~~~~~~g~l 207 (685)
T 3f6k_A 144 MYSPQNSDYLLALS------TENGLWVSKNFGGKWEEIHK----A----VC-LAK-WGSDNTIFFTTYANGSCKADLGAL 207 (685)
T ss_dssp EEETTEEEEEEEEB------TTCCEEEESSTTSSEEEEES----S----EE-EEE-ECSTTCEEEEECSSSCTTTTTTSE
T ss_pred EEecCCCCEEEEEE------CCCCEEEEeCCCCCcEEeec----C----cc-ccc-cCCCCeEEEEeeccccccCCCCce
Confidence 2222 333333321 12458999999999998641 1 11 011 112345655432221 23466
Q ss_pred EEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 215 CMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 215 ~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
.+.+|.|.|++|..... .+.-..+.+.-++++........+.+++|.|+|.+|.+..
T Consensus 208 ~L~~S~D~g~t~~~l~~--------~i~~f~~~~~yl~va~~~~~g~~~~l~VS~D~G~tf~~a~ 264 (685)
T 3f6k_A 208 ELWRTSDLGKSFKTIGV--------KIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQ 264 (685)
T ss_dssp EEEEESSTTSSCEEEEE--------EEEEEEEETTEEEEEEECTTSSCEEEEEESSTTSSCEECB
T ss_pred EEEEecCCCCCceEeec--------cceeeeeeeeEEEEEEecCCCceEEEEEECcCCcceeEee
Confidence 77789999999975321 1111122233333333333344567889999999998764
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.5e-08 Score=95.31 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=82.6
Q ss_pred EEEEecCCCCCCCCCccCCCC-CCCCCCCccEEcc-C-CeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCC-
Q 020796 110 CMKRSYNKGVTWSEREQLPPG-ILGPSKNKPILLE-N-GLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNES- 185 (321)
Q Consensus 110 ~~~~S~D~G~TWs~~~~l~~~-~~g~~~~~~~~~~-~-G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~- 185 (321)
.+++|+|+|+||+....++.- ........+.+.+ + +.+++.... ...+++|+|+|+||+....+ +...
T Consensus 144 gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~------~~~v~~S~DgG~TW~~~~~~--~~~~~ 215 (789)
T 1sqj_A 144 GIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA------PQGMYVTHDGGVSWEPVAGQ--PSSWL 215 (789)
T ss_dssp CEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS------TTCEEEESSTTSSCEECTTC--CCSCC
T ss_pred CEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC------CCeEEEEcCCCcCcccCCCC--cCccc
Confidence 488999999999976543210 0000001111211 3 345554321 04588999999999986422 1100
Q ss_pred ------c-----ceee-eeEEEcC-CCeEEEEEeecC-----CCCcEEEEEeccCCcCCCCCccCCC---CCC----CC-
Q 020796 186 ------L-----SVIQ-PVPFHTA-NRTLRVLMRSFN-----GIGRVCMSESCDGGLTWSYAKPTQL---LNP----NS- 239 (321)
Q Consensus 186 ------~-----~~~~-~~~~~~~-~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tWs~~~~~~~---~~~----~~- 239 (321)
. ..+. ..++..+ +++|++.++... ..+.+ .+|.|+|+||+....... |.+ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l--~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~ 293 (789)
T 1sqj_A 216 NRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEV--WRQNRTSGAWDDITPRVGNSSPAPYNNQTFP 293 (789)
T ss_dssp HHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCE--EEEETTTCCEEECCCCTTTEESCCCSSCCSC
T ss_pred cccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceE--EEEeCCCCceEECcCCCCccccccccccccc
Confidence 0 0000 1222222 678888774321 12345 468899999998653211 100 11
Q ss_pred --ce-eEEEcC--CCcEEEEEeCCC--CCeEEEEEEcCCCCCCCcce
Q 020796 240 --GI-DGVKLK--DGRLLLAYNTVS--RGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 240 --~~-~~~~~~--~g~~~lv~~~~~--r~~l~~~~S~D~G~tW~~~~ 279 (321)
.+ .+...+ .++++++..... .....+++|.|+|++|++..
T Consensus 294 ~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 294 AGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEESSTTSSEEEHH
T ss_pred cCceEEEEECCCCCCEEEEEEeccCCCcccccEEEecCCCCCceeCc
Confidence 22 222222 245666554211 01136889999999998775
|
| >3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-06 Score=80.17 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=82.1
Q ss_pred eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEcc-C-CeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCC
Q 020796 108 SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLE-N-GLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNES 185 (321)
Q Consensus 108 ~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~-~-G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~ 185 (321)
.+.+++|+|+|+||++...............+.+.+ | +++++....+. ......+++|+|+|+||+... +...+.
T Consensus 64 ~ggvyrS~DgG~TW~~v~~~~~~~~~~~~~~IavdP~dp~~vyvag~~~~-~~~~g~v~rS~DgG~TW~~~~-~p~~~~- 140 (685)
T 3f6k_A 64 QSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSG-GSRGGRIFRSSDFAKNFVQTD-LPFHPL- 140 (685)
T ss_dssp EEEEEEESSTTSSCEECGGGGTTCCBCGGGCEEECSTTCCCEEEEECCCT-TCSSCEEEEESSTTSSCEEEE-CSSCBS-
T ss_pred CCeEEEEeCCCCCceECcCCCCCCcccceeEEEECCCCCCEEEEEEeccC-CCCCceEEEECCCCceeEecc-CCCCCc-
Confidence 456899999999999876532221100001222322 3 35666543211 123567999999999999864 221111
Q ss_pred cceeeeeEEEcC-C-CeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCC-----
Q 020796 186 LSVIQPVPFHTA-N-RTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTV----- 258 (321)
Q Consensus 186 ~~~~~~~~~~~~-~-G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~----- 258 (321)
..+...+ + +.+++. .. .+.+| +|.|+|+||+..... +. .......+.+++.-...
T Consensus 141 -----~~l~~~P~~~~~l~a~--~~--~~gly--~S~DgG~TW~~i~~~-v~------~~~f~~~~~Iy~~~~~~~~~~~ 202 (685)
T 3f6k_A 141 -----TQMMYSPQNSDYLLAL--ST--ENGLW--VSKNFGGKWEEIHKA-VC------LAKWGSDNTIFFTTYANGSCKA 202 (685)
T ss_dssp -----SCCEEETTEEEEEEEE--BT--TCCEE--EESSTTSSEEEEESS-EE------EEEECSTTCEEEEECSSSCTTT
T ss_pred -----eEEEEecCCCCEEEEE--EC--CCCEE--EEeCCCCCcEEeecC-cc------ccccCCCCeEEEEeeccccccC
Confidence 1222222 2 334432 11 24454 589999999975431 11 11122335555443221
Q ss_pred CCCeEEEEEEcCCCCCCCcc
Q 020796 259 SRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 259 ~r~~l~~~~S~D~G~tW~~~ 278 (321)
....+.+..|.|.|++|...
T Consensus 203 ~~g~l~L~~S~D~g~t~~~l 222 (685)
T 3f6k_A 203 DLGALELWRTSDLGKSFKTI 222 (685)
T ss_dssp TTTSEEEEEESSTTSSCEEE
T ss_pred CCCceEEEEecCCCCCceEe
Confidence 34678899999999999753
|
| >3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00013 Score=65.31 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=117.7
Q ss_pred CCCCeEEEEeCCCcEEEEEEecccc------CCceeEEEEecCCCCCCCCC-cc-CCCCCC---------CCCCCccEEc
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEV------QKWSGCMKRSYNKGVTWSER-EQ-LPPGIL---------GPSKNKPILL 142 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~------~~~~~~~~~S~D~G~TWs~~-~~-l~~~~~---------g~~~~~~~~~ 142 (321)
...+|.++. .+|+++|+|+..... +.....+.+|+| |.+|+.. .+ +.+... +...++++..
T Consensus 52 gvfnp~ai~-~dGky~LfY~~~~~~~~~~~~~~~~ig~A~S~D-Gi~w~~~~~Pvl~P~~~~~~~~e~~~gv~DP~v~~~ 129 (364)
T 3qc2_A 52 DTFNPAATL-YNGEIVVLYRAEDKSGVGIGHRTSRLGYATSTD-GTHFQREKTPVFYPDNDSQKELEWPGGCEDPRIAVT 129 (364)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEECSSSSSTTCSCEEEEEEEESS-SSSCEECSSCSBCCCSSTTHHHHTTTEEEEEEEEEC
T ss_pred ceECceEEE-ECCEEEEEEEEECCCCcccCCCceEEEEEEeCC-CceeeEcCcCeEcCCCccccccccCCcEECCEEEEe
Confidence 345576654 489999999864322 112345788887 6789862 22 323211 1112223333
Q ss_pred cCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCC-----CCcceeeeeEE----------EcCCCeEEEEEee
Q 020796 143 ENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPN-----ESLSVIQPVPF----------HTANRTLRVLMRS 207 (321)
Q Consensus 143 ~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~-----~~~~~~~~~~~----------~~~~G~l~~~~r~ 207 (321)
.+|++++...........+.+++|+| +.+|+...++..+. .......++++ +.-+|+++|+++.
T Consensus 130 edG~yym~Yta~~~~~~~i~lA~S~D-l~~W~k~g~i~~p~~~g~f~~~~~kd~~i~~~~r~~~lfp~ki~GkY~M~~g~ 208 (364)
T 3qc2_A 130 DDGLYVMMYTQWNRHVPRLAVATSRN-LKDWTKHGPAFAKAFDGKFFNLGCKSGSILTEVVKGKQVIKKVNGKYFMYWGE 208 (364)
T ss_dssp TTSCEEEEEEEECSSCEEEEEEEESS-SSSCEEEEETTSSHHHHTTTTCCCCCEEEEEEEETTEEEECEETTEEEEEECS
T ss_pred CCCEEEEEEEecCCCCeEEEEEEECC-CCEEEEeeeccCccccccccccccccceeeeeccccceeeEEECCEEEEEEcC
Confidence 57876554221111233566777775 79999876543221 00000111111 2347888888763
Q ss_pred cCCCCcEEEEEeccCCcCCCCCc-------cCCCCCCC--------CceeEEEcCCCcEEEEEeCC------------CC
Q 020796 208 FNGIGRVCMSESCDGGLTWSYAK-------PTQLLNPN--------SGIDGVKLKDGRLLLAYNTV------------SR 260 (321)
Q Consensus 208 ~~~~~~~~~~~S~D~G~tWs~~~-------~~~~~~~~--------~~~~~~~~~~g~~~lv~~~~------------~r 260 (321)
..+.++.|.| +..|+... .+-.+.+. .+...+..++| .+|+|+.. .+
T Consensus 209 ----~~I~la~S~D-l~~W~~~~~~~g~~~~~~~~~~~~wds~~ig~gp~pI~t~~G-wLl~YhGv~~~~~~~~~~~~~~ 282 (364)
T 3qc2_A 209 ----EHVFAATSDD-LIHWTPIVNIDGSLKKLFSPRDGYFDSHLTECGPPAIYTPKG-IVLLYNGKNHSGRGDKRYTANV 282 (364)
T ss_dssp ----SSBEEEEESS-SSSEEECBCTTSCBCCSBCCCTTSSSSSEEEECSCEEEETTE-EEEEEEEECCTTTSCTTSCTTC
T ss_pred ----CeEEEEeCCC-cccceEccccCCCeeeeccCCCChHhhcccccCCCcEEcCCC-EEEEEecccccccccccccCce
Confidence 6788899977 88996421 11011111 11233555666 66777531 23
Q ss_pred CeEEEEEEc-CCCCCCCcce-----ee-cc------cC-CCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 261 GVLKVALSK-DDGDSWHDAL-----TL-EE------NL-AMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 261 ~~l~~~~S~-D~G~tW~~~~-----~l-~~------~~-~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
..+.+++-+ |+- +..+. ++ .+ +. ....-||.-.+..+|.++|-|.-....|-...++|
T Consensus 283 Y~~g~~llD~~dP--~kvi~r~~~p~l~P~~~~E~~G~yv~nVvF~~G~~~~~~~~~iyYG~aD~~i~vA~~~~ 354 (364)
T 3qc2_A 283 YAAGQALFDANDP--TRFITRLDEPFFRPMDSFEKSGQYVDGTVFIEGMVYFKNKWYLYYGCADSKVGVAVYDP 354 (364)
T ss_dssp EEEEEEEECSSCT--TCEEEECSSCSBCCCSGGGCCSSSTTCCEEEEEEEEETTEEEEEEEETTTEEEEEEECT
T ss_pred EEEEEEEEcCCCC--ceeEEcCCCceEcCCCccccCCCCcCCEEEeCCcEeeCCEEEEEEeccccEEEEEEECC
Confidence 455555543 331 21111 11 11 11 12356666555567788777766666666665554
|
| >3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00032 Score=62.76 Aligned_cols=229 Identities=13% Similarity=0.132 Sum_probs=116.3
Q ss_pred CCCeEEEEeCCCcEEEEEEecccc------CCceeEEEEecCCCCCCCC-Ccc-CCCCCC--------CCCC-CccEEcc
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEV------QKWSGCMKRSYNKGVTWSE-REQ-LPPGIL--------GPSK-NKPILLE 143 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~------~~~~~~~~~S~D~G~TWs~-~~~-l~~~~~--------g~~~-~~~~~~~ 143 (321)
+.+|.++. .+|+++|+|+..... +.....+.+|+| |.+|+. +.+ +.+... ..++ ++++...
T Consensus 50 v~sgsai~-~dG~y~lfYtg~~~~~~~~~~~~~~ig~A~S~D-gi~w~~~~~pvl~p~~~~~~~~~~~~~~~DP~v~~~~ 127 (356)
T 3taw_A 50 TFNPAATI-YDGKIVVMYRAEDNSAQGIGSRTSRLGYATSTD-GIHFERDTKPAFYPAKDNQAENECPGGTEDPRIAMTE 127 (356)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSSSCSTTSSCEEECCEEESS-SSSCEECSSCSBCCCSSTTHHHHTTTEEEEEEEEECT
T ss_pred eECcEEEE-ECCEEEEEEEEEcCCCccCCCceeEEEEEEeCC-CccceECCcceecCCCccccccccCCceECCEEEEEC
Confidence 45566655 489999999864321 112344788887 678986 222 222211 1111 2223334
Q ss_pred CCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCC---------CCcceee-------eeEEEcCCCeEEEEEee
Q 020796 144 NGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPN---------ESLSVIQ-------PVPFHTANRTLRVLMRS 207 (321)
Q Consensus 144 ~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~---------~~~~~~~-------~~~~~~~~G~l~~~~r~ 207 (321)
+|.+++...........+.++.|+| +.+|+...++..+. ...+.+- |.+ ..-+|+.+|+++.
T Consensus 128 dg~y~m~yt~~~~~~~~i~la~S~D-l~~W~~~g~i~~~~~~~~~~~~~~k~~~l~p~~~~g~p~v-~k~~G~y~m~~g~ 205 (356)
T 3taw_A 128 DGTYVLLYTQWNRKVPRLAVATSKD-LKHWTKFGPAFEKAYNGKFKDEATKSASLVTTLKGDKQVI-AKVNGKYFMYWGE 205 (356)
T ss_dssp TSCEEEEEEEECSSCEEEEEEEESS-SSSCEEEEETTSSHHHHTTTTSCCCCEEEEEEEETTEEEE-CCBTTBEEEEECS
T ss_pred CCEEEEEEEEeCCCCceEEEEECCC-CCCceEeeeEcCCccccccccccCCccEEeecccCCCceE-EEECCEEEEEeCC
Confidence 6776543222111123455667765 78999876543221 0011111 222 3457899998752
Q ss_pred cCCCCcEEEEEeccCCcCCCCC-------ccCCCCCCC--------CceeEEEcCCCcEEEEEeCC-------------C
Q 020796 208 FNGIGRVCMSESCDGGLTWSYA-------KPTQLLNPN--------SGIDGVKLKDGRLLLAYNTV-------------S 259 (321)
Q Consensus 208 ~~~~~~~~~~~S~D~G~tWs~~-------~~~~~~~~~--------~~~~~~~~~~g~~~lv~~~~-------------~ 259 (321)
..+.+++|.| +.+|+.. ..+-.+.+. ++...+..++| .+|+|+.. .
T Consensus 206 ----~~I~la~S~D-l~~W~~~~~~~~~~~~~l~~~~~~wd~~~ig~gp~pI~t~~G-wll~YhGv~~~~~~~~~~~~~~ 279 (356)
T 3taw_A 206 ----KNVYAATSDN-LIDWDPLLDENGELLKLFSPRSGYFDSQLTECGPPAILTKDG-IVLLYNGKNEPGEKGDTAYPAN 279 (356)
T ss_dssp ----SSBEEEEESS-SSSCEECBCTTSSBCCSBCCCTTSSCSSEEEECSCEEEETTE-EEEEEEEECCSGGGSCTTSCTT
T ss_pred ----ceeeEEECCC-cccCeeccccCCCcceEecCCCChheeccccCCCccEEECCc-EEEEEeccccccccccccccCc
Confidence 5688999988 6799863 111111111 11234566666 77777531 2
Q ss_pred CCeEEEEEEc-CCC-CCCCc---ceeecc------cC-CCceeceEEEEccCCeEEEEEEeCCCeeEEEEeC
Q 020796 260 RGVLKVALSK-DDG-DSWHD---ALTLEE------NL-AMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLL 319 (321)
Q Consensus 260 r~~l~~~~S~-D~G-~tW~~---~~~l~~------~~-~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~ 319 (321)
+..+.+++.+ |+- +-..+ +.+..+ +. .....||.-.+..+|.++|-|.-....|-...+.
T Consensus 280 ~Y~~g~~lld~~dp~kvi~r~~~p~l~P~~~~E~~G~yv~nvvf~~g~~~~~~~~~iyYg~aD~~i~~a~~~ 351 (356)
T 3taw_A 280 SYCAGQALFDVNNPTKLIGRLDKPFLQPTDDFEKSGQYPAGTVFVEGLVYYRNKWYLYYGCADSFVAVAVSD 351 (356)
T ss_dssp CEEEEEEEECSSSTTCEEEECSSCSBCCCSHHHHSSSSTTCBEEEEEEEEETTEEEEEEEETTTEEEEEEEC
T ss_pred eEEEEEEEEcCCCCCEeeecCCCCeEcCCCCcccCCcccCCEEEeCCeEeCCCEEEEEecccceeEEEEEEc
Confidence 3455666653 321 11111 111111 11 1135677755556778877676665555554443
|
| >4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00082 Score=62.66 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=109.3
Q ss_pred Cccccc-eEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCC-cEEccCCCCCCCCCeEEEEeCCCc-------E
Q 020796 25 KSCHAS-TIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQS-PIIADEEPNVPMWNPVLFKLPSNG-------L 94 (321)
Q Consensus 25 ~~~~~p-~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~~~~~~~p~l~~~~~G~-------l 94 (321)
..-..| -++.. +|..+++|.-......... .--++|+|. +|+. +..+.++....+...+.+.+++|+ +
T Consensus 11 gwmNDPNG~~y~-~G~YHlFYQ~~P~~~~~g~-WgHa~S~DLvhW~~~~~aL~P~~~~g~~SGSav~~~~~~~g~~~~~~ 88 (492)
T 4ffh_A 11 GWLCNPQRPVTT-HGAYQLYYLHSDQNNGPGG-WDHASTTDGVAFTHHGTVMPLRPDFPVWSGSAVVDTANTAGFGAGAV 88 (492)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEESSTTCCCE-EEEEEESSSSSCEEEEEEECCBTTBCCCCEEEEEETTCSSSSCTTEE
T ss_pred CCeeCCeeeEEE-CCEEEEEEECCCCCCCCCc-EEEEEeCCCCccEECCCCCCCCCCCCEEeceEEEeCCCccccCCCcE
Confidence 334445 45544 5888887633322111112 456789998 9997 445555444566777777777775 9
Q ss_pred EEEEEeccc--cCCceeEEEEecCCCCCCCCCc-cCCCCCCCC-------------CCCccEEc--cCCeEEEeeecccC
Q 020796 95 LLFYKIGQE--VQKWSGCMKRSYNKGVTWSERE-QLPPGILGP-------------SKNKPILL--ENGLLLCGSSVESW 156 (321)
Q Consensus 95 ~l~~~~~~~--~~~~~~~~~~S~D~G~TWs~~~-~l~~~~~g~-------------~~~~~~~~--~~G~~~~~~~~~~~ 156 (321)
+++|+.... .+....++++|+|+|.+|++.. ++.+..... .+.+-+.. .+|.+++....
T Consensus 89 ~l~YTg~~~~~~~~q~q~lA~S~D~g~~w~k~~nPvi~~p~~~~~~~~~~~~~~~~fRDP~V~~~~~~g~w~mv~a~--- 165 (492)
T 4ffh_A 89 VALATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVIGR--- 165 (492)
T ss_dssp EEEEEEEGGGCGGGEEEEEEEESSSSSSCEECSSCSBCCTTTTTCCSHHHHHHHTCEEEEEEEEETTTTEEEEEEEE---
T ss_pred EEEEeecccCCCCcEEEEEEEeCCCCceEEEcCccccCCCCccccccccccccCCCCcCCEEEEECCCCEEEEEEEC---
Confidence 999985321 1223457899999999998751 221111111 22222333 46787665422
Q ss_pred CCCcEEEEEECCCCceeEEeeceecCCCCcceee-eeEEEcCC----CeEEEEEeecC-----CCCcEEEEEeccCCcCC
Q 020796 157 NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTAN----RTLRVLMRSFN-----GIGRVCMSESCDGGLTW 226 (321)
Q Consensus 157 ~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~----G~l~~~~r~~~-----~~~~~~~~~S~D~G~tW 226 (321)
...+.++.|. +.++|+...++...+..-+..| |.++.++. ++.++++.... .....|+.=..| |.+|
T Consensus 166 -~~~i~ly~S~-DL~~W~~~~~~~~~~~~g~mwECPdlf~l~~~~~~~k~vL~~s~~~~~~~~~~~~~Y~vG~~d-~~~f 242 (492)
T 4ffh_A 166 -LRYAAFYTSP-NLRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWD-GEQF 242 (492)
T ss_dssp -TTEEEEEEES-SSSSCEECCCEECSCGGGCCCEEEEEEEEECTTSCEEEEEEEECCCGGGTCCSSEEEEEEEEC-SSCE
T ss_pred -CCeEEEEECC-CCCCceEeccccccCCccceEECCeEEEECCCCCCceEEEEEccCCCCCCCccceEEEEEEee-CCEE
Confidence 1246666675 5799998876543322112233 67777653 45555554221 123455555566 6778
Q ss_pred CC
Q 020796 227 SY 228 (321)
Q Consensus 227 s~ 228 (321)
.+
T Consensus 243 ~~ 244 (492)
T 4ffh_A 243 HA 244 (492)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00037 Score=61.07 Aligned_cols=220 Identities=15% Similarity=0.059 Sum_probs=124.9
Q ss_pred CCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCC-CC-C---CCCCCCccEE-ccCCeEEEeee
Q 020796 79 VPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLP-PG-I---LGPSKNKPIL-LENGLLLCGSS 152 (321)
Q Consensus 79 ~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~-~~-~---~g~~~~~~~~-~~~G~~~~~~~ 152 (321)
....+|.++.. +|+.+++++.... ......+.+|+| ..+|+....+. +. . .+...+.++. ..+|++++...
T Consensus 22 ~~~~DP~i~~~-~g~yyl~~t~~~~-~~~~i~~~~S~D-Lv~W~~~g~~l~~~~~~~~~~~wAP~v~~~~~~g~~yl~yt 98 (306)
T 3kst_A 22 LPIADPYVMFY-NNKYYAYGTGGTT-AGEGFACFSSDD-LKNWKREGQALSATDSYGTWGFWAPEVYYVESKKKFYLFYS 98 (306)
T ss_dssp BCCEEEEEEEE-TTEEEEEEESCCS-SSSEEEEEEESS-SSEEEEEEEEEEGGGSSCSSCCEEEEEEEETTTTEEEEEEE
T ss_pred ccCCCCEEEEE-CCEEEEEEecCCc-CCCCEEEEEeCC-ccccEECceecCCCCcccccccccCeEEEECCCCEEEEEEE
Confidence 45667988776 8888888764211 111234667776 68998665432 11 1 1222222222 23888766433
Q ss_pred cccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCcc-
Q 020796 153 VESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP- 231 (321)
Q Consensus 153 ~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~- 231 (321)
.. ..+.++.|+|-.-.|+......+.. ...+.|.++...||+.++++........+++++-.+...+|.....
T Consensus 99 ~~----~~i~va~s~~p~Gpw~~~~~~p~~~--~~~iDp~vf~D~dG~~Yl~~~~~~~g~~i~~~~ls~d~~~~~~~~~~ 172 (306)
T 3kst_A 99 AE----EHICVATSTTPEGPFRQEVKQPIWS--EKSIDTSLFIDDDGTPYLYFVRFTDGNVIWVAQMTDDLMSIKTETLN 172 (306)
T ss_dssp ET----TEEEEEEESSTTCCCBCSSCCCSSS--SCCEEEEEEECTTSCEEEEEEEESSSEEEEEEEBCTTSSCBCGGGCE
T ss_pred CC----CcEEEEEcCCCCCCcEeCCCccccC--CCcccceEEEeCCCCEEEEEEEeCCCCEEEEEEeCcccccccCccee
Confidence 21 2567788877555788643111111 3567899988889999888754322234666664455677764321
Q ss_pred -CCCC--------C-CCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCc-c--eeecc-c--CCCceec
Q 020796 232 -TQLL--------N-PNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHD-A--LTLEE-N--LAMEFSY 291 (321)
Q Consensus 232 -~~~~--------~-~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~-~--~~l~~-~--~~~~~~y 291 (321)
...+ . ...+..+.. .+|..+|++... ....+.+++|.+=--.|.. + -++.. . .....++
T Consensus 173 ~~~~~~~~w~~~~~~~~EgP~i~k-~~G~YYL~~S~~~~~~~~y~v~~a~S~s~~GPw~~~~~~pil~~~~~~~~~g~GH 251 (306)
T 3kst_A 173 QCIKAEVSWELLQGKVAEGPSLLK-KNGVYYLIYSANHYENKGYGVGYATSDTPMGPWVKYSKNPLLQGDAATGLVGTGH 251 (306)
T ss_dssp EEECCCSGGGCSSSSBEEEEEEEE-ETTEEEEEEEESCTTSTTCEEEEEEESSTTCCCEECTTCCSBSSBTTTTBCSCEE
T ss_pred eeccCCccceecCCCceecceEEE-ECCEEEEEEEeCCCCCCCceEEEEEeCCCCCCCEeCCCCeeEeecCCCceecCCC
Confidence 0000 0 011233444 579999998532 3446788888753335876 2 13332 1 1124578
Q ss_pred eEEEEccCCeEEEEEEe
Q 020796 292 PAVIQASDGSVHITYTY 308 (321)
Q Consensus 292 p~~~~~~dg~l~v~y~~ 308 (321)
..+++..+|..+++|-.
T Consensus 252 ~~~v~~~~G~~~~vyh~ 268 (306)
T 3kst_A 252 GAPFQCKDGSWKYIFHA 268 (306)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred CceEECCCCCEEEEEec
Confidence 88888889998888865
|
| >1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.002 Score=57.25 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=78.5
Q ss_pred CeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCC---ccCCC--C---CCCC-CCCccEEccCCeEEEeeec
Q 020796 83 NPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSER---EQLPP--G---ILGP-SKNKPILLENGLLLCGSSV 153 (321)
Q Consensus 83 ~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~---~~l~~--~---~~g~-~~~~~~~~~~G~~~~~~~~ 153 (321)
+|.++.. +|+++|+|+.....+.....+..|+|+ .+|+.. ...+. . ..+. ..++ +...+|++++....
T Consensus 58 n~~~i~~-~g~~~lfY~~~~~~~~~~~~~A~S~Dg-i~w~~~~~pvl~p~~~~~~~~~g~~yDP~-v~~~~d~yym~yt~ 134 (338)
T 1vkd_A 58 NSAVVPY-NGEFVGVFRIDHKNTRPFLHFGRSKDG-INWEIEPEEIQWVDVNGEPFQPSYAYDPR-VVKIEDTYYITFCT 134 (338)
T ss_dssp EEEEEEE-TTEEEEEEEEEETTSCEEEEEEEESSS-SSCEECSSCCCEECTTSCBCCCSSEEEEE-EEEETTEEEEEEEE
T ss_pred ccEEEEE-CCEEEEEEEEECCCCcEEEEEEEeCCC-CccEECCCCEEeCCCCCccccCCEEeCcE-EEEECCEEEEEEEE
Confidence 5666554 899999998643222223467889875 599753 22122 1 1121 1222 33346776553222
Q ss_pred ccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcC-CCeEEEEEeecC----CCCcEEEEEeccCCcCCCC
Q 020796 154 ESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTA-NRTLRVLMRSFN----GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 154 ~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~G~l~~~~r~~~----~~~~~~~~~S~D~G~tWs~ 228 (321)
......+.+++|+| +.+|+....+.. +. ...+.+.... +|+.++++|.+. ..+.+++++|.| ..+|+.
T Consensus 135 -~~~~~~i~la~S~D-l~~W~~~~~i~~-~~---~rd~~~fp~~i~Gky~m~~~~q~~~~~~~~~I~~a~S~D-l~~W~~ 207 (338)
T 1vkd_A 135 -DDHGPTIGVGMTKD-FKTFVRLPNAYV-PF---NRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPD-MIHWGN 207 (338)
T ss_dssp -ESSSEEEEEEEESS-SSSEEEECCSSS-SS---EEEEEECSSCBTTBEEEEEEECCSSSCSCCCEEEEEESS-SSCBEE
T ss_pred -cCCcceEEEEEECC-CCeEEECCccCC-Cc---CCceEEEEEEECCEEEEEEEecCCCCCCCcEEEEEEcCC-cccCCc
Confidence 22233566777875 689998764422 11 1223333211 789999987642 356899999988 678985
Q ss_pred Cc
Q 020796 229 AK 230 (321)
Q Consensus 229 ~~ 230 (321)
..
T Consensus 208 ~~ 209 (338)
T 1vkd_A 208 HR 209 (338)
T ss_dssp EE
T ss_pred Cc
Confidence 43
|
| >3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00042 Score=62.10 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=68.2
Q ss_pred CccccceEEEecCCcEEEEEecCCCCC----CCCcEEEEEEeCCC-CcCC-cE-EccCCCC--------CCCCCeEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEG----APDVKIWLQTFKDG-RWQS-PI-IADEEPN--------VPMWNPVLFKL 89 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g----~~~~~i~~s~s~~G-tWs~-~~-~~~~~~~--------~~~~~p~l~~~ 89 (321)
..+..|+++.. +|+++++|......+ .....+.+++|+|| +|+. +. ++.++.. ..+.+|.++..
T Consensus 51 ~gvfnp~ai~~-dGky~LfY~~~~~~~~~~~~~~~~ig~A~S~DGi~w~~~~~Pvl~P~~~~~~~~e~~~gv~DP~v~~~ 129 (364)
T 3qc2_A 51 NDTFNPAATLY-NGEIVVLYRAEDKSGVGIGHRTSRLGYATSTDGTHFQREKTPVFYPDNDSQKELEWPGGCEDPRIAVT 129 (364)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEECSSSSSTTCSCEEEEEEEESSSSSCEECSSCSBCCCSSTTHHHHTTTEEEEEEEEEC
T ss_pred CceECceEEEE-CCEEEEEEEEECCCCcccCCCceEEEEEEeCCCceeeEcCcCeEcCCCccccccccCCcEECCEEEEe
Confidence 46778898854 589999887654332 23467889999999 9986 22 2333222 24568988876
Q ss_pred CCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCC
Q 020796 90 PSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLP 128 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~ 128 (321)
.+|+.+|+|+.. ........+++|+| +.+|+....+.
T Consensus 130 edG~yym~Yta~-~~~~~~i~lA~S~D-l~~W~k~g~i~ 166 (364)
T 3qc2_A 130 DDGLYVMMYTQW-NRHVPRLAVATSRN-LKDWTKHGPAF 166 (364)
T ss_dssp TTSCEEEEEEEE-CSSCEEEEEEEESS-SSSCEEEEETT
T ss_pred CCCEEEEEEEec-CCCCeEEEEEEECC-CCEEEEeeecc
Confidence 789999999863 22233456788876 79998765543
|
| >3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00035 Score=65.69 Aligned_cols=199 Identities=9% Similarity=0.034 Sum_probs=107.0
Q ss_pred ccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEEe
Q 020796 28 HAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 28 ~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
..|- ++.. +|..+++|.-... ...+.+..--++|+|. +|+. |..+.++. ...+..++.+.+.+|+++++|+.
T Consensus 53 NDPNG~~y~-~G~YHlFYQ~~P~~~~wg~~~WgHa~S~DLvhW~~~~~aL~P~~~~d~~g~~SGSav~~~dg~~~l~YTg 131 (526)
T 3pij_A 53 NDPNGLCFY-KGRWHVFYQLHPYGTQWGPMHWGHVSSTDMLNWKREPIMFAPSLEQEKDGVFSGSAVIDDNGDLRFYYTG 131 (526)
T ss_dssp EEEEEEEEE-TTEEEEEEEEETTCSSSCSBEEEEEEESSSSSEEECCCCBCCCBGGGTTEEEEEEEEECTTSCEEEEEEE
T ss_pred eCCeEEEEE-CCEEEEEEEcCCCCCCcCCcEEEEEEeCCCCCceeCeeccCCCCccccCCeEeceEEEccCCEEEEEEec
Confidence 3454 6554 5888887643221 1123466677899999 9996 33344322 12345566666778999999985
Q ss_pred ccc------cCC--ceeEEEEecCCC-CCCCCCccCCCCC-C---CCCCCccEEccCCeEEEeeecccCCCC-cEEEEEE
Q 020796 101 GQE------VQK--WSGCMKRSYNKG-VTWSEREQLPPGI-L---GPSKNKPILLENGLLLCGSSVESWNSW-GSWMEVT 166 (321)
Q Consensus 101 ~~~------~~~--~~~~~~~S~D~G-~TWs~~~~l~~~~-~---g~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~S 166 (321)
... .+. ...++++|+|+| .+|++..++.... . ...+.+-+...+|.+++.......... .+.++.|
T Consensus 132 ~~~~~~~~~~~~~~q~q~lA~S~D~gl~~w~K~~pvi~~P~~~~~~~fRDP~V~~~~g~w~mv~ga~~~~~~G~i~ly~S 211 (526)
T 3pij_A 132 HRWANGHDNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYRDPKVWKTGDTWYMTFGVSSADKRGQMWLFSS 211 (526)
T ss_dssp EEETTSSSGGGCEEEEEEEEEESSTTCSCEEEEEEEECCCGGGEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEE
T ss_pred ccCcccccCCCCceeEEEEEEECCCCcceEEECCccccCCCCccccccccCEEEEECCEEEEEEEEecCCCCcEEEEEEC
Confidence 321 111 235689999999 9998754332111 0 012222233467887654221111122 3455666
Q ss_pred CCCCceeEEeeceecCC-CCcceee-eeEEEcCC--C--eEEEEEeecC----------CCCcEEEEEeccCCcCCCC
Q 020796 167 VDAGRSWRKYGPIYIPN-ESLSVIQ-PVPFHTAN--R--TLRVLMRSFN----------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~-~~~~~~~-~~~~~~~~--G--~l~~~~r~~~----------~~~~~~~~~S~D~G~tWs~ 228 (321)
++.++|+...++.... ..-+..| |.++.+++ | +.++++.... .....|+.=..|.|.+|.+
T Consensus 212 -~Dl~~W~~~g~l~~~~~~~g~mwECPdlf~l~~~~g~~k~vL~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~f~~ 288 (526)
T 3pij_A 212 -KDMVRWEYERVLFQHPDPDVFMLECPDFSPIKDKDGNEKWVIGFSAMGSKPSGFMNRNVSNAGYMIGTWEPGGEFKP 288 (526)
T ss_dssp -SSSSSCEEEEEEEECSCTTCCEEEEEEEEEEECTTSCEEEEEEEEEESCCCBTTBSCSSSEEEEEEEEECTTSCEEE
T ss_pred -CCCCcceEcCcccccCCCccCeEECCEEEEECCCCCceeEEEEEeccccCCCccccccccceeEEEEEEcCCCcEEE
Confidence 4679999887643222 2122333 67777753 2 4444432211 0123455445675677764
|
| >1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0025 Score=59.91 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=108.2
Q ss_pred Cccccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEc----cCC-CCCCCCCeEEEEeCCC---
Q 020796 25 KSCHAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIA----DEE-PNVPMWNPVLFKLPSN--- 92 (321)
Q Consensus 25 ~~~~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~----~~~-~~~~~~~p~l~~~~~G--- 92 (321)
.....|- ++. -+|+.+++|.-... ...+.+....++|+|. +|+. +..+ .++ ....++.++.+.+.+|
T Consensus 18 gw~NDPnG~~~-~~G~yHlfyQ~~P~~~~wg~~~WgHa~S~Dlv~W~~~~~al~~~g~P~~d~~g~~SGsav~~~~~~~g 96 (518)
T 1y4w_A 18 NWMNDPNGLLY-HNGTYHLFFQYNPGGIEWGNISWGHAISEDLTHWEEKPVALLARGFGSDVTEMYFSGSAVADVNNTSG 96 (518)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEECTTCSSSCSCEEEEEEESSSSSCEEEEEEECCBTTTSCCCBEEEEEEEEECTTCTTS
T ss_pred CceECCCcceE-ECCEEEEEEeeCCCCCCCCCcEEEEEEeCCCccEEECCceEecCCCCCCCCCceEeeeEEEcCCCccc
Confidence 3444565 555 46888887743322 1234566778999999 9986 4445 331 2234666777766665
Q ss_pred -------cEEEEEEeccccC------------CceeEEEEecCCCCCCCCC---ccCC-CCCC------CCCCCccEEc-
Q 020796 93 -------GLLLFYKIGQEVQ------------KWSGCMKRSYNKGVTWSER---EQLP-PGIL------GPSKNKPILL- 142 (321)
Q Consensus 93 -------~l~l~~~~~~~~~------------~~~~~~~~S~D~G~TWs~~---~~l~-~~~~------g~~~~~~~~~- 142 (321)
+++++|+...... ....++++|+|+|.+|++. .+|. +... ...+.+.+..
T Consensus 97 ~~~~~~~~~~l~YTg~~~~~~~~~~~~~~~~~~q~q~lA~s~D~g~~w~k~~~~~pvi~~~~~~y~~~~~~fRDP~V~~~ 176 (518)
T 1y4w_A 97 FGKDGKTPLVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWH 176 (518)
T ss_dssp CCCSSSCCEEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEEEE
T ss_pred cccCCCccEEEEEeeeeccccccccccccccceeEEEEEEEcCCCceEEEcCCCCCeEecCCcccccCCCCcCCCcEeEE
Confidence 8999998532111 1345689999999999875 2322 2110 1112222332
Q ss_pred -cCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceee-eeEEEcC-----CCeEEEEEeecCC-----
Q 020796 143 -ENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTA-----NRTLRVLMRSFNG----- 210 (321)
Q Consensus 143 -~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~-----~G~l~~~~r~~~~----- 210 (321)
.+|.+++..... ....+.++.|+ +..+|+...++...+...+..| |.++.++ +++.++++.....
T Consensus 177 ~~~g~w~mv~~~g--~~~~i~ly~S~-DL~~W~~~~~~~~~~~~~~mwECPdlf~l~~~g~~~~k~vL~~s~~~~~~~~~ 253 (518)
T 1y4w_A 177 DESQKWVVVTSIA--ELHKLAIYTSD-NLKDWKLVSEFGPYNAQGGVWECPGLVKLPLDSGNSTKWVITSGLNPGGPPGT 253 (518)
T ss_dssp TTTTEEEEEEEEG--GGTEEEEEEES-SSSSCEEEEEECCCSCCSSEEEEEEEEEEEBTTSSCEEEEEEEEEESCCSTTC
T ss_pred CCCCcEEEEEEec--CCCeEEEEECC-CCCCCeECccccccCCCCCeEECCeEEEeecCCCCceeEEEEeccCCCCcccc
Confidence 258876652110 11246667775 5699998765532222223444 6777762 2356665543211
Q ss_pred --CCcEEEEEeccCCcCCCC
Q 020796 211 --IGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 211 --~~~~~~~~S~D~G~tWs~ 228 (321)
....|+.=..| +.+|.+
T Consensus 254 ~~~~~~Y~vG~~d-~~~f~~ 272 (518)
T 1y4w_A 254 VGSGTQYFVGEFD-GTTFTP 272 (518)
T ss_dssp CSCEEEEEEEEEC-SSCEEE
T ss_pred ccCCcEEEEEEee-CCEEEe
Confidence 12334444455 457764
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0028 Score=55.53 Aligned_cols=221 Identities=12% Similarity=0.012 Sum_probs=124.2
Q ss_pred CCCeEEEEe-CCCcEEEEEEeccccCCc---eeEEEEecCCCCCCCCCccCC-CCC------CCCCCCccEEcc---CCe
Q 020796 81 MWNPVLFKL-PSNGLLLFYKIGQEVQKW---SGCMKRSYNKGVTWSEREQLP-PGI------LGPSKNKPILLE---NGL 146 (321)
Q Consensus 81 ~~~p~l~~~-~~G~l~l~~~~~~~~~~~---~~~~~~S~D~G~TWs~~~~l~-~~~------~g~~~~~~~~~~---~G~ 146 (321)
+.+|.++.. .+|+.+|+.+. .....+ ...+.+|+| ..+|+....+. ... .+...+.++..+ +|+
T Consensus 15 ~~DP~i~~~~~dg~yyl~~t~-~~~~~~~~~~~~~~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~~wAP~v~~~~~~~~Gk 92 (311)
T 3qz4_A 15 HADPEVLYSHQTKRYYIYPTS-DGFPGWGGSYFKVFSSKN-LKTWKEETVILEMGKNVSWANGNAWAPCIEEKKIDGKYK 92 (311)
T ss_dssp EEEEEEEEETTTTEEEEEEEE-CSSGGGCCCEECCEEESS-SSSCEECCCCEEBTTTBTTEEEEEEEEEEEEEEETTEEE
T ss_pred cCCceEEEECCCCEEEEEEec-CCCCCCCCcEEEEEECCC-CCCcEECceecccccCCCcccCCcCCCeeEEeeecCCCE
Confidence 467887665 45899988763 221111 123667776 68998765432 111 111222233332 788
Q ss_pred EEEeeeccc--CCCCcEEEEEECCCCceeEEee-ceecCC-C-CcceeeeeEEEcC-CCeEEEEEeecCCCCcEEEEEec
Q 020796 147 LLCGSSVES--WNSWGSWMEVTVDAGRSWRKYG-PIYIPN-E-SLSVIQPVPFHTA-NRTLRVLMRSFNGIGRVCMSESC 220 (321)
Q Consensus 147 ~~~~~~~~~--~~~~~~~~~~S~D~G~tW~~~~-~~~~~~-~-~~~~~~~~~~~~~-~G~l~~~~r~~~~~~~~~~~~S~ 220 (321)
+++...... .....+.++.|+|-.-.|+... ++.... . ....+.|.++..+ ||+.++++.. +.+++++-.
T Consensus 93 yylyyt~~~~~~~~~~i~va~s~~p~Gpw~~~~~p~~~~~~~g~~~~iDp~vf~dd~dG~~yl~~g~----~~i~~~~l~ 168 (311)
T 3qz4_A 93 YFFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLYWGN----GYMAGAELN 168 (311)
T ss_dssp EEEEEEEEETTCSSCEEEEEEESSTTCCCEECSSCSBCSCTTSSSBSCCCEEEECTTTCCEEEEECB----SSCEEEEBC
T ss_pred EEEEEEeccCCCCCeeEEEEEECCCCCCceECCcceEcCCCCCCcccccccEEEECCCCcEEEEEcC----CCEEEEEeC
Confidence 755422211 1134677888887655899743 232211 1 1245678888887 8999998854 456666644
Q ss_pred cCCcCCCCCc-cCCCCC--------CCCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCcce---eeccc
Q 020796 221 DGGLTWSYAK-PTQLLN--------PNSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDAL---TLEEN 284 (321)
Q Consensus 221 D~G~tWs~~~-~~~~~~--------~~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~---~l~~~ 284 (321)
+.+.+|.... .+-.+. ...+..+.. .+|+.+|++... ....+.+++|.+=---|.... ++...
T Consensus 169 ~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k-~~g~YyL~~s~~~~~~~~y~~~~~~S~~~~GPw~~~~~~pil~~~ 247 (311)
T 3qz4_A 169 DDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIY-RKGIYYFFWSVDDTGSPNYHVVYGTAQSPLGPIEVAKEPIVLIQN 247 (311)
T ss_dssp TTSSSBCGGGCEECCCCCCCTTTTCCCEEEEEEE-ETTEEEEEEEESCTTSTTCEEEEEEESSTTCCCEEEEEEEEECCB
T ss_pred CcccccCCCceEEeCCCCCcccccceeeccEEEE-ECCEEEEEEEcCCCCCCCceEEEEEcCCCCCCCEeCCCCcEEecC
Confidence 4466666421 111111 112234444 579999998643 234778888875322487653 34321
Q ss_pred ---CCCceeceEEEEccCC-eEEEEEEe
Q 020796 285 ---LAMEFSYPAVIQASDG-SVHITYTY 308 (321)
Q Consensus 285 ---~~~~~~yp~~~~~~dg-~l~v~y~~ 308 (321)
.....++..++..++| ..+++|-.
T Consensus 248 ~~~~~~g~gH~~~~~~~~g~~w~~~yh~ 275 (311)
T 3qz4_A 248 PKEEIYGPAHNSILQVPGKDKWYIVYHR 275 (311)
T ss_dssp GGGTBEEEEEEEEEECTTSSCEEEEEEE
T ss_pred CCCceEcCCCCeEEEcCCCCEEEEEEec
Confidence 1125678899998875 67787765
|
| >3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0012 Score=58.98 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=84.9
Q ss_pred cEEEEEECCCCceeEEe-eceecCCC--------CcceeeeeEEEcCCCeEEEEEeecC-CCCcEEEEEeccCCcCCCCC
Q 020796 160 GSWMEVTVDAGRSWRKY-GPIYIPNE--------SLSVIQPVPFHTANRTLRVLMRSFN-GIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~~~-~~~~~~~~--------~~~~~~~~~~~~~~G~l~~~~r~~~-~~~~~~~~~S~D~G~tWs~~ 229 (321)
...+++|+| |.+|++. .++..+.. ..++..|.++..++|++++++.... ....+.+++|.| +.+|+..
T Consensus 82 ~ig~A~S~D-gi~w~~~~~pvl~p~~~~~~~~~~~~~~~DP~v~~~~dg~y~m~yt~~~~~~~~i~la~S~D-l~~W~~~ 159 (356)
T 3taw_A 82 RLGYATSTD-GIHFERDTKPAFYPAKDNQAENECPGGTEDPRIAMTEDGTYVLLYTQWNRKVPRLAVATSKD-LKHWTKF 159 (356)
T ss_dssp EECCEEESS-SSSCEECSSCSBCCCSSTTHHHHTTTEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEEESS-SSSCEEE
T ss_pred EEEEEEeCC-CccceECCcceecCCCccccccccCCceECCEEEEECCCEEEEEEEEeCCCCceEEEEECCC-CCCceEe
Confidence 355678887 6789983 34432221 1355578888777889988876543 235678889988 7899863
Q ss_pred ccCCCC----------CCCCce--------eEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcc-------e-eecc
Q 020796 230 KPTQLL----------NPNSGI--------DGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDA-------L-TLEE 283 (321)
Q Consensus 230 ~~~~~~----------~~~~~~--------~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~-------~-~l~~ 283 (321)
..+-.+ .....+ ..++..+|+.+|++. +..+.++.|.| +.+|.+. . ++..
T Consensus 160 g~i~~~~~~~~~~~~~~k~~~l~p~~~~g~p~v~k~~G~y~m~~g---~~~I~la~S~D-l~~W~~~~~~~~~~~~~l~~ 235 (356)
T 3taw_A 160 GPAFEKAYNGKFKDEATKSASLVTTLKGDKQVIAKVNGKYFMYWG---EKNVYAATSDN-LIDWDPLLDENGELLKLFSP 235 (356)
T ss_dssp EETTSSHHHHTTTTSCCCCEEEEEEEETTEEEECCBTTBEEEEEC---SSSBEEEEESS-SSSCEECBCTTSSBCCSBCC
T ss_pred eeEcCCccccccccccCCccEEeecccCCCceEEEECCEEEEEeC---CceeeEEECCC-cccCeeccccCCCcceEecC
Confidence 322111 111111 113456799999985 34578888875 7799852 2 3332
Q ss_pred cCC-C---ce-eceEEEEccCCeEEEEEEe
Q 020796 284 NLA-M---EF-SYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 284 ~~~-~---~~-~yp~~~~~~dg~l~v~y~~ 308 (321)
... . -. ++|..+..++| .+++|..
T Consensus 236 ~~~~wd~~~ig~gp~pI~t~~G-wll~YhG 264 (356)
T 3taw_A 236 RSGYFDSQLTECGPPAILTKDG-IVLLYNG 264 (356)
T ss_dssp CTTSSCSSEEEECSCEEEETTE-EEEEEEE
T ss_pred CCChheeccccCCCccEEECCc-EEEEEec
Confidence 221 1 12 56777777777 5666654
|
| >3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0078 Score=52.55 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=124.7
Q ss_pred eEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cCCC---CCCCCCeEEEE
Q 020796 14 EFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DEEP---NVPMWNPVLFK 88 (321)
Q Consensus 14 ~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~~~---~~~~~~p~l~~ 88 (321)
+.+|.+. ......+.|.++.. +|+++++.... ... ...+.+.+|+|. +|+....+ .... ....+.|.+..
T Consensus 12 ~~~~~~~-~~~~~~~DP~i~~~-~g~yyl~~t~~-~~~--~~~i~~~~S~DLv~W~~~g~~l~~~~~~~~~~~wAP~v~~ 86 (306)
T 3kst_A 12 QGSVSVE-TNYLPIADPYVMFY-NNKYYAYGTGG-TTA--GEGFACFSSDDLKNWKREGQALSATDSYGTWGFWAPEVYY 86 (306)
T ss_dssp ----CEE-ESSBCCEEEEEEEE-TTEEEEEEESC-CSS--SSEEEEEEESSSSEEEEEEEEEEGGGSSCSSCCEEEEEEE
T ss_pred Cceeeec-CCcccCCCCEEEEE-CCEEEEEEecC-CcC--CCCEEEEEeCCccccEECceecCCCCcccccccccCeEEE
Confidence 4455443 33456788999887 68888765332 111 124778889997 99986543 2211 13467798754
Q ss_pred -eCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCcc--CCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEE
Q 020796 89 -LPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQ--LPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEV 165 (321)
Q Consensus 89 -~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~--l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 165 (321)
..+|+.+|+|+.. ....+..|+|-...|+.... +.. ...+-..++...||+.++.... ...+..+.+..
T Consensus 87 ~~~~g~~yl~yt~~-----~~i~va~s~~p~Gpw~~~~~~p~~~--~~~iDp~vf~D~dG~~Yl~~~~-~~~g~~i~~~~ 158 (306)
T 3kst_A 87 VESKKKFYLFYSAE-----EHICVATSTTPEGPFRQEVKQPIWS--EKSIDTSLFIDDDGTPYLYFVR-FTDGNVIWVAQ 158 (306)
T ss_dssp ETTTTEEEEEEEET-----TEEEEEEESSTTCCCBCSSCCCSSS--SCCEEEEEEECTTSCEEEEEEE-ESSSEEEEEEE
T ss_pred ECCCCEEEEEEECC-----CcEEEEEcCCCCCCcEeCCCccccC--CCcccceEEEeCCCCEEEEEEE-eCCCCEEEEEE
Confidence 3689999999852 14567788876567886432 211 1111122234457887665321 11233455666
Q ss_pred ECCCCceeEEeece-ec-CCC-----Ccceee-eeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCC--ccC
Q 020796 166 TVDAGRSWRKYGPI-YI-PNE-----SLSVIQ-PVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYA--KPT 232 (321)
Q Consensus 166 S~D~G~tW~~~~~~-~~-~~~-----~~~~~~-~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~--~~~ 232 (321)
-+++..+|...... .. +.. .....| |.+.. .+|.+++++.... ....+.+++|++---.|+.. .++
T Consensus 159 ls~d~~~~~~~~~~~~~~~~~~w~~~~~~~~EgP~i~k-~~G~YYL~~S~~~~~~~~y~v~~a~S~s~~GPw~~~~~~pi 237 (306)
T 3kst_A 159 MTDDLMSIKTETLNQCIKAEVSWELLQGKVAEGPSLLK-KNGVYYLIYSANHYENKGYGVGYATSDTPMGPWVKYSKNPL 237 (306)
T ss_dssp BCTTSSCBCGGGCEEEECCCSGGGCSSSSBEEEEEEEE-ETTEEEEEEEESCTTSTTCEEEEEEESSTTCCCEECTTCCS
T ss_pred eCcccccccCcceeeeccCCccceecCCCceecceEEE-ECCEEEEEEEeCCCCCCCceEEEEEeCCCCCCCEeCCCCee
Confidence 55666777643211 11 110 112344 55555 4789998886542 12357788888764568762 121
Q ss_pred CC---CC--CCCce-eEEEcCCCcEEEEEe
Q 020796 233 QL---LN--PNSGI-DGVKLKDGRLLLAYN 256 (321)
Q Consensus 233 ~~---~~--~~~~~-~~~~~~~g~~~lv~~ 256 (321)
-. .. ...++ .++...+|+.+|+|.
T Consensus 238 l~~~~~~~~~g~GH~~~v~~~~G~~~~vyh 267 (306)
T 3kst_A 238 LQGDAATGLVGTGHGAPFQCKDGSWKYIFH 267 (306)
T ss_dssp BSSBTTTTBCSCEEEEEEECTTSCEEEEEE
T ss_pred EeecCCCceecCCCCceEECCCCCEEEEEe
Confidence 11 00 11122 345667899999985
|
| >1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0025 Score=58.52 Aligned_cols=179 Identities=11% Similarity=0.050 Sum_probs=98.0
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCCcE-EccCCC-CCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQSPI-IADEEP-NVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~~~-~~~~~~-~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.....|.-+...+|+.++.|.-... .....+.+..++|+|. +|+... .+.++. ...++.|.++. .+|+++++|+.
T Consensus 13 gw~nDPng~~~~~G~yhlfyq~~p~~~~~g~~~wgha~S~Dlv~W~~~~~aL~p~~~~~g~~sgsav~-~~g~~~l~YTg 91 (432)
T 1w2t_A 13 GWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWRHLPVALYPDDETHGVFSGSAVE-KDGKMFLVYTY 91 (432)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETTSSSCCSCEEEEEEESSSSSCEEEEEEECCSSTTEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCeECCCcCeEECCEEEEEEecCCCCCCCCCcEEEEEEcCCCcCeEECCccCCCCCCCCCEEeeEEEE-ECCEEEEEEec
Confidence 4556677333346888886633221 1123456778899999 998744 344322 23355677655 58999999985
Q ss_pred ccc-c----CCceeEEEEecCCCCCCCC--CccC-CCCCCC---CCCCccEEccCCeEEEeeecccCCC-CcEEEEEECC
Q 020796 101 GQE-V----QKWSGCMKRSYNKGVTWSE--REQL-PPGILG---PSKNKPILLENGLLLCGSSVESWNS-WGSWMEVTVD 168 (321)
Q Consensus 101 ~~~-~----~~~~~~~~~S~D~G~TWs~--~~~l-~~~~~g---~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~S~D 168 (321)
... . .....++++|+| |.+|++ ..++ .....+ ..+.+.+...+|++++......... ..+.++.|.
T Consensus 92 ~~~~~~~~~~~~~q~lA~S~D-~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~dg~~~m~~g~~~~~~~g~i~ly~S~- 169 (432)
T 1w2t_A 92 YRDPTHNKGEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWRMVLGSGKDEKIGRVLLYTSD- 169 (432)
T ss_dssp EECCCSSCCCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEECSSSEEEEEEEEETTTEEEEEEEEES-
T ss_pred CccCCCCCCceEEEEEEEeCC-CCeEEecCCCceEeCCCccccccccCCEEEEECCEEEEEEEEecCCCCcEEEEEECC-
Confidence 322 0 112356889998 569987 2222 211111 0122223334788765432111111 235566665
Q ss_pred CCceeEEeeceecCCCCccee-eeeEEEcCCCeEEEEEeec
Q 020796 169 AGRSWRKYGPIYIPNESLSVI-QPVPFHTANRTLRVLMRSF 208 (321)
Q Consensus 169 ~G~tW~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~~~~r~~ 208 (321)
++.+|+...++...+. -... .|.++.+ +|+.++++..+
T Consensus 170 Dl~~W~~~g~~~~~~~-g~~~EcP~lf~~-~g~~vL~~s~~ 208 (432)
T 1w2t_A 170 DLFHWKYEGAIFEDET-TKEIDCPDLVRI-GEKDILIYSIT 208 (432)
T ss_dssp SSSSCEEEEEEEEETT-CSCCEEEEEEEE-TTEEEEEEEET
T ss_pred CCCCceEccccccCCC-CCEEECCeEEEE-CCEEEEEEeCC
Confidence 5799998765532221 1222 3778877 47877777554
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.007 Score=54.45 Aligned_cols=190 Identities=12% Similarity=0.078 Sum_probs=102.8
Q ss_pred CCcEEEEEEecccc----------------CCceeEEEEecCCCCCCCCCccC-CCCCC------CCCCCccEEccCCeE
Q 020796 91 SNGLLLFYKIGQEV----------------QKWSGCMKRSYNKGVTWSEREQL-PPGIL------GPSKNKPILLENGLL 147 (321)
Q Consensus 91 ~G~l~l~~~~~~~~----------------~~~~~~~~~S~D~G~TWs~~~~l-~~~~~------g~~~~~~~~~~~G~~ 147 (321)
+|+.+|+|+..... +.....+++|+| +.+|+....+ .+... +...+. ++..+|++
T Consensus 60 dG~Yymfyt~~~~~~~G~~~~~~~~~~~~w~~~~i~~a~S~D-Lv~W~~~g~~l~~~~~~~~d~~gvwaPs-vi~~dGky 137 (374)
T 3r4z_A 60 DDEYHVWYTKGEGETVGFGSDNPEDKVFPWDKTEVWHATSKD-KITWKEIGPAIQRGAAGAYDDRAVFTPE-VLRHNGTY 137 (374)
T ss_dssp TTEEEEEEEEEESCCCCSSCSCTTSCSSTTTTCEEEEEEESS-SSEEEEEEEEECCCCTTSTTSSEEEEEE-EEEETTEE
T ss_pred CCEEEEEEEcCCCcccccccccccccccccCccEEEEEECCC-CcCcEeCcccCCCCCCCCccCCCEECCE-EEEECCEE
Confidence 79999999864210 011234667876 6899876543 22111 111122 33458887
Q ss_pred EEeeeccc--C---CCCcEEEEEECCCCceeEEeeceecCCC----------------------CcceeeeeEEEcCCCe
Q 020796 148 LCGSSVES--W---NSWGSWMEVTVDAGRSWRKYGPIYIPNE----------------------SLSVIQPVPFHTANRT 200 (321)
Q Consensus 148 ~~~~~~~~--~---~~~~~~~~~S~D~G~tW~~~~~~~~~~~----------------------~~~~~~~~~~~~~~G~ 200 (321)
++...... . ....+.+++|+|....|+......+.+. ......|.++. .+|+
T Consensus 138 yL~Yt~~~~~~~~~~~~~igvA~Sdd~~Gpw~~~~~Pvi~~~~~~~w~~ddd~~~~~~~~~~~d~~~~~~P~v~~-~~g~ 216 (374)
T 3r4z_A 138 YLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWTKSDAPILSPENDGVWDTDEDNRFLVKEKGSFDSHKVHDPCLMF-FNNR 216 (374)
T ss_dssp EEEEEEECSSCCTTCCBEEEEEEESSTTCCCEECSSCSBCCCCCSEECSSSSCTTCEEECCSTTSSEEEEEEEEE-ETTE
T ss_pred EEEEEeccCCCCCCCcceEEEEEECCCCCCeEECCCCEeCCCcCCceeecCCceEEEecCCccccCccccceEEE-ECCE
Confidence 65422111 1 1246788999988788998532111111 11234566665 4789
Q ss_pred EEEEEeecCC---------CCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCC
Q 020796 201 LRVLMRSFNG---------IGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDD 271 (321)
Q Consensus 201 l~~~~r~~~~---------~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~ 271 (321)
+++++..... ...+.+++|++-.-.|+......+-.......+....++..+|++....... .++.|. |
T Consensus 217 yyl~Y~~~~~~~~~~~~~~~~~igvA~sds~~Gpw~~~~~~Pi~~~~~dp~V~~~~~g~~~mv~~~g~~~~-~l~~S~-D 294 (374)
T 3r4z_A 217 FYLYYKGETMGESMNMGGREIKHGVAIADSPLGPYTKSEYNPITNSGHEVAVWPYKGGMATMLTTDGPEKN-TCQWAE-D 294 (374)
T ss_dssp EEEEEEEECTTCCEETTEECEEEEEEEESSTTCCCEECTTCCCCSSCSSCCEEEETTEEEEEECSSSTTCS-EEEEET-T
T ss_pred EEEEEEecCCCCccccCCCcceEEEEEECCCCCCCEECCCCCEeCCCCCCceEEeCCEEEEEEEecCCCce-EEEECC-C
Confidence 9998865421 1257788888644458763211111111223445545554466664332222 666775 6
Q ss_pred CCCCCcceeecccC
Q 020796 272 GDSWHDALTLEENL 285 (321)
Q Consensus 272 G~tW~~~~~l~~~~ 285 (321)
|.+|.....+...+
T Consensus 295 g~~W~~~~~i~~~p 308 (374)
T 3r4z_A 295 GINFDIMSHIKGAP 308 (374)
T ss_dssp SSSCEEEEECSCCC
T ss_pred cCCeEEcceeccCC
Confidence 89999887776543
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.002 Score=58.61 Aligned_cols=192 Identities=15% Similarity=0.221 Sum_probs=105.3
Q ss_pred ccceEEEecCCcEEEEEecCC--CCC------------CCCcEEEEEEeCCC-CcCCcEE-ccCCC-----CCCCCCeEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGS--CEG------------APDVKIWLQTFKDG-RWQSPII-ADEEP-----NVPMWNPVL 86 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~--~~g------------~~~~~i~~s~s~~G-tWs~~~~-~~~~~-----~~~~~~p~l 86 (321)
+.|..+...+|++++.|.... ..| .....|..++|+|+ +|+.... +.... ....+.|.+
T Consensus 96 ~DP~~vi~~dG~Yylfyt~~~~~~~G~~~~~~~~~~~p~~~~~i~~A~S~Dlv~W~~~g~~l~~~~~~~wd~~gv~aPsV 175 (408)
T 3p2n_A 96 RDPSAIIKENGKYYVWYSKSTGPTQGFGGDIEKDKVFPWDRCDIWYATSEDGWTWKEEGPAVTRGEKGAYDDRSVFTVEI 175 (408)
T ss_dssp ECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESSSSEEEEEEEEECCCSTTSTTSSEEEEEEE
T ss_pred CCCCEEEEECCEEEEEEEeCCCcccccccccccccccccccceEEEEEcCCCCeeeEeCceeCCCCCCCcccCceEeeEE
Confidence 457733345689888765322 111 12457889999998 9997653 33221 123567887
Q ss_pred EEeCCCcEEEEEEecccc-C---CceeEE--EEecCCCCCCCCC-ccC-CCCC----------------CCC-----CCC
Q 020796 87 FKLPSNGLLLFYKIGQEV-Q---KWSGCM--KRSYNKGVTWSER-EQL-PPGI----------------LGP-----SKN 137 (321)
Q Consensus 87 ~~~~~G~l~l~~~~~~~~-~---~~~~~~--~~S~D~G~TWs~~-~~l-~~~~----------------~g~-----~~~ 137 (321)
+.. +|+.+|+|+..... . .....+ ..|.| |. |+.. ..+ .+.. .+. +..
T Consensus 176 i~~-dGkYyL~Yt~~~~~~~~~~~~~i~va~A~S~D-G~-W~~~~~pli~~~~~~~~~~e~d~~~~~~~~~~wd~~~v~~ 252 (408)
T 3p2n_A 176 MKW-EDKYYLCYQTVKSPYNVRVKNQVGLAWADSPD-GP-WTKSEEPILSPADNGVWKGEEQDRFAVIKKGDFDSHKVHD 252 (408)
T ss_dssp EEE-TTEEEEEEEEECSSCCTTCCCEEEEEEESSTT-CC-CEECSSCSBCCCSCCEECSSSCCTTCEEECCSTTSSEEEE
T ss_pred EEE-CCEEEEEEEeecCCCCCcCCCceEEEEEECCC-CC-EEECCcceeCCCCCceEEEecCCcccccccceecCCCeEc
Confidence 665 89999999853211 1 112233 34555 56 9874 223 2210 000 122
Q ss_pred ccEEccCCeEEEeeecccC------C--CCcEEEEEECCCCceeEEee--ceecCCCCcceeeeeEEEcCCCeEEEEEee
Q 020796 138 KPILLENGLLLCGSSVESW------N--SWGSWMEVTVDAGRSWRKYG--PIYIPNESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 138 ~~~~~~~G~~~~~~~~~~~------~--~~~~~~~~S~D~G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
+.+...+|.+++....... . ...+.+++|+|-.-.|+... |+. . ...++.+...++|..+++.+.
T Consensus 253 P~v~~~~G~yyl~Ys~~~~g~~~~~~~~~~~igvA~Sdd~~Gpw~k~~~nPVl-~----~~~dp~Vw~~~dG~y~mi~~~ 327 (408)
T 3p2n_A 253 PCIIPYKGKFYLYYKGEQMGEAITFGGRQIRHGVAIADNPKGPYVKSPYNPIS-N----SGHEICVWPYNGGIASLITTD 327 (408)
T ss_dssp EEEEEETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCCEECTTCCSC-S----SCSSCCEEEETTEEEEEECSS
T ss_pred ceEEEECCEEEEEEEcccCccccccCCCccEEEEEEECCCCCCcEECCCCCcc-c----CCCCCeeEecCCCEEEEEEEC
Confidence 2334457887654322211 1 24567889988655798853 332 1 112466776677877776544
Q ss_pred cCCCCcEEEEEeccCCcCCCCCc
Q 020796 208 FNGIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 208 ~~~~~~~~~~~S~D~G~tWs~~~ 230 (321)
.. +...+.+|.| |..|.-.-
T Consensus 328 g~--gh~~i~~S~D-g~~W~~~~ 347 (408)
T 3p2n_A 328 GP--EKNTIQWAPD-GINFEIKS 347 (408)
T ss_dssp ST--TCSEEEEESS-SSCCEEEE
T ss_pred CC--CcEEEEECCC-CCEEEEEe
Confidence 32 3333356766 89998643
|
| >3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0034 Score=56.54 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=108.6
Q ss_pred ccccce-EEEecCCcEEEEEecCCC--CC------------CCCcEEEEEEeCCC-CcCCcEEc-cCCC-----CCCCCC
Q 020796 26 SCHAST-IVEVDKGHFLVAYFGGSC--EG------------APDVKIWLQTFKDG-RWQSPIIA-DEEP-----NVPMWN 83 (321)
Q Consensus 26 ~~~~p~-l~~~~~g~l~~~~~~~~~--~g------------~~~~~i~~s~s~~G-tWs~~~~~-~~~~-----~~~~~~ 83 (321)
..+.|. |+. .+|++++.|..... .| .....|..++|+|. +|+....+ .... ....+.
T Consensus 49 ~~~DP~~v~~-~dG~Yymfyt~~~~~~~G~~~~~~~~~~~~w~~~~i~~a~S~DLv~W~~~g~~l~~~~~~~~d~~gvwa 127 (374)
T 3r4z_A 49 IRRDPSAVLK-VDDEYHVWYTKGEGETVGFGSDNPEDKVFPWDKTEVWHATSKDKITWKEIGPAIQRGAAGAYDDRAVFT 127 (374)
T ss_dssp EEECCCCBEE-ETTEEEEEEEEEESCCCCSSCSCTTSCSSTTTTCEEEEEEESSSSEEEEEEEEECCCCTTSTTSSEEEE
T ss_pred CcCCCCeEEE-ECCEEEEEEEcCCCcccccccccccccccccCccEEEEEECCCCcCcEeCcccCCCCCCCCccCCCEEC
Confidence 455684 544 46899987744321 11 12456889999998 99986543 3211 124566
Q ss_pred eEEEEeCCCcEEEEEEecccc----CCceeEEEEecCCCCCCCCCcc--CCCCCCC---------------------CCC
Q 020796 84 PVLFKLPSNGLLLFYKIGQEV----QKWSGCMKRSYNKGVTWSEREQ--LPPGILG---------------------PSK 136 (321)
Q Consensus 84 p~l~~~~~G~l~l~~~~~~~~----~~~~~~~~~S~D~G~TWs~~~~--l~~~~~g---------------------~~~ 136 (321)
|.++.. +|+.+|+|+..... ......+++|+|....|+.... +.+...+ .+.
T Consensus 128 Psvi~~-dGkyyL~Yt~~~~~~~~~~~~~igvA~Sdd~~Gpw~~~~~Pvi~~~~~~~w~~ddd~~~~~~~~~~~d~~~~~ 206 (374)
T 3r4z_A 128 PEVLRH-NGTYYLVYQTVKAPYLNRSLEHIAIAYSDSPFGPWTKSDAPILSPENDGVWDTDEDNRFLVKEKGSFDSHKVH 206 (374)
T ss_dssp EEEEEE-TTEEEEEEEEECSSCCTTCCBEEEEEEESSTTCCCEECSSCSBCCCCCSEECSSSSCTTCEEECCSTTSSEEE
T ss_pred CEEEEE-CCEEEEEEEeccCCCCCCCcceEEEEEECCCCCCeEECCCCEeCCCcCCceeecCCceEEEecCCccccCccc
Confidence 887655 89999999853221 1234578899998788986421 1111000 011
Q ss_pred CccEEccCCeEEEeeeccc------CC--CCcEEEEEECCCCceeEEee--ceecCCCCcceeeeeEEEcCCCeEEEEEe
Q 020796 137 NKPILLENGLLLCGSSVES------WN--SWGSWMEVTVDAGRSWRKYG--PIYIPNESLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 137 ~~~~~~~~G~~~~~~~~~~------~~--~~~~~~~~S~D~G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~G~l~~~~r 206 (321)
.+.+...+|.+++...... +. ...+.+++|++-.-.|+... |+.. ...+|.+...++|..+++..
T Consensus 207 ~P~v~~~~g~yyl~Y~~~~~~~~~~~~~~~~~igvA~sds~~Gpw~~~~~~Pi~~-----~~~dp~V~~~~~g~~~mv~~ 281 (374)
T 3r4z_A 207 DPCLMFFNNRFYLYYKGETMGESMNMGGREIKHGVAIADSPLGPYTKSEYNPITN-----SGHEVAVWPYKGGMATMLTT 281 (374)
T ss_dssp EEEEEEETTEEEEEEEEECTTCCEETTEECEEEEEEEESSTTCCCEECTTCCCCS-----SCSSCCEEEETTEEEEEECS
T ss_pred cceEEEECCEEEEEEEecCCCCccccCCCcceEEEEEECCCCCCCEECCCCCEeC-----CCCCCceEEeCCEEEEEEEe
Confidence 1223345787655422211 11 12467888886333598752 3321 12356777766655455543
Q ss_pred ecCCCCcEEEEEeccCCcCCCCCcc
Q 020796 207 SFNGIGRVCMSESCDGGLTWSYAKP 231 (321)
Q Consensus 207 ~~~~~~~~~~~~S~D~G~tWs~~~~ 231 (321)
.....+ .+++|.| |.+|+..-.
T Consensus 282 ~g~~~~--~l~~S~D-g~~W~~~~~ 303 (374)
T 3r4z_A 282 DGPEKN--TCQWAED-GINFDIMSH 303 (374)
T ss_dssp SSTTCS--EEEEETT-SSSCEEEEE
T ss_pred cCCCce--EEEECCC-cCCeEEcce
Confidence 332223 4566876 899987543
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0019 Score=56.50 Aligned_cols=171 Identities=11% Similarity=0.080 Sum_probs=98.3
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcE---EccCC-----C-CCCCCCeEEEEeCCCc
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPI---IADEE-----P-NVPMWNPVLFKLPSNG 93 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~---~~~~~-----~-~~~~~~p~l~~~~~G~ 93 (321)
.....|.|+. .+|++++.|............|.++++++ |.|+.+. ++... + .....+|.++.+.+|+
T Consensus 73 ~~~WAP~i~~-~~Gkyylyyt~~~~~~~~~~~i~va~s~~p~Gpw~~~~~~pl~~~~~~~~~~~~~~~iDp~vf~DddG~ 151 (307)
T 3qee_A 73 GDAWASQVIE-RNGKFYWYVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQ 151 (307)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEEEECTTSCSEEEEEEEESSTTCCCEESSSSCSBCGGGCCSSCCSCCSCCCEEEECTTSC
T ss_pred CCccCceEEE-ECCEEEEEEEeccCCCCCceEEEEEEECCCCCCCEeCCCCeeEecCccccCCCCcCcccCceEECCCCC
Confidence 3467799986 46899886654332222234577777764 6999852 22211 1 1235789999988999
Q ss_pred EEEEEEeccccCCceeEEEEecCCCCCCCCCc-cCCCCCCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCCce
Q 020796 94 LLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE-QLPPGILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 94 l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~-~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~t 172 (321)
.+|+|... ...+.+-+++..+|.... .+. +..+..+++-+...+|..++.... . ....+.+++|++=---
T Consensus 152 ~Yl~~g~~------~i~~~~l~~d~~~~~g~~~~i~-~~~~~~EgP~i~k~~g~YyL~~s~-~-~~~~~~~~~s~~~~GP 222 (307)
T 3qee_A 152 AYLFWGNT------RPRYAKLKKNMVELDGPIRAIE-GLPEFTEAIWVHKYQDNYYLSYAM-G-FPEKIGYAMGKSIKGP 222 (307)
T ss_dssp EEEEECSS------SCEEEEECTTSSSEEEEEEECC-CCTTEEEEEEEEECC-CEEEEEEE-T-TTTEEEEEEESSTTCC
T ss_pred EEEEEeCC------cEEEEEECCccccccCceEEeC-CCCCccCceEEEEECCEEEEEEEC-C-CCcEEEEEECCCCCCC
Confidence 99998631 344555555667775432 232 111123444455567876654332 1 3456788899874345
Q ss_pred eEEeeceecCC-CCcceeeeeEEEcCCCeEEEEEee
Q 020796 173 WRKYGPIYIPN-ESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 173 W~~~~~~~~~~-~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
|+... +.... ...+.-+.++++. +|+.++++..
T Consensus 223 ~~~~~-il~~~~~~~g~gH~~~v~~-~G~~~~~yh~ 256 (307)
T 3qee_A 223 WVYKG-ILNEVAGNTPTNHQAIIEF-NNKHYFIYHT 256 (307)
T ss_dssp CEEEE-EEECCCBTCSCCCCEEEEE-TTEEEEEEEE
T ss_pred cEECC-EEecCCCcccCCCccEEEe-CCcEEEEEcc
Confidence 88764 43222 1223334577877 8888877644
|
| >3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0016 Score=61.14 Aligned_cols=166 Identities=12% Similarity=0.106 Sum_probs=90.7
Q ss_pred cce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCC---CCCCCCeEEEEeCCCcEEEEEEec
Q 020796 29 AST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEP---NVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 29 ~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~---~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
.|- ++.. +|..++.|.-... ...+.+..--++|+|. +|+. +..+.++. ...+..++.+..++|+++++|+..
T Consensus 33 DPNG~~y~-~G~YHLFYQ~nP~~~~wg~~~WGHa~S~DLvhW~~~p~AL~P~~~~D~~G~~SGSavv~~dg~~~l~YTg~ 111 (546)
T 3ugf_A 33 DPDGPIFY-KGWYHFFYQYNPDNPVWGNNTWGHTVSRDLIHWLYLPLALAADQWYDMQGVFSGSATCLPDGRIMMLYTGV 111 (546)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSCSSSCSCEEEEEEESSSSSCEECCCCBCSCSGGGTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCceeEEE-CCEEEEEEecCCCCCCCCCcEEEEEEcCCcCccccCCCCCCCCcccccCCcCcceEEEeeCCeEEEEEEec
Confidence 444 5554 5888887633222 1123456677889998 9996 33344432 123555666567899999999853
Q ss_pred cccCCceeEEEEecCCC----CCCCCCc--c-CC-C-CCC-CCCCCccEE--ccCCeEEEeeecccCCCCc-EEEEEECC
Q 020796 102 QEVQKWSGCMKRSYNKG----VTWSERE--Q-LP-P-GIL-GPSKNKPIL--LENGLLLCGSSVESWNSWG-SWMEVTVD 168 (321)
Q Consensus 102 ~~~~~~~~~~~~S~D~G----~TWs~~~--~-l~-~-~~~-g~~~~~~~~--~~~G~~~~~~~~~~~~~~~-~~~~~S~D 168 (321)
........++++|+|+| .+|++.. + +. + +.. ...+.+-++ ..+|.+++...... +..+ +.+++|+
T Consensus 112 ~~~~~q~q~lA~S~D~~d~~l~~w~K~~~nPVi~~p~g~~~~~fRDPkVvw~~~~g~w~MviGa~~-~~~G~vllY~S~- 189 (546)
T 3ugf_A 112 TKEMVEMLSLAYPADLSDPLLVEWVKYPGNPILSAPPGVSPTEFRDASTGWYVSNGTWRIAIGAKY-NTTGIAMVYETK- 189 (546)
T ss_dssp CTTCCEEEEEEEESCTTCTTCCCEEECTTCCCBCCCTTSCTTSCCCBCCCEECSTTCEEEEEEEEE-TTEEEEEEEEES-
T ss_pred cCCCcEEEEEEEECCCCCCccceeEEcCCCceEeCCCCCCcceeeccceEeECCCCEEEEEEEEcc-CCcceEEEEECC-
Confidence 32223345789999986 8997632 2 22 1 211 123333322 35788765432211 1222 3455665
Q ss_pred CCceeEEeeceecCCCCcceee-eeEEEcC
Q 020796 169 AGRSWRKYGPIYIPNESLSVIQ-PVPFHTA 197 (321)
Q Consensus 169 ~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~ 197 (321)
+.++|+....+.......+..| |.++.++
T Consensus 190 DL~~W~~~~~~~~~~~~~gmwECPDlf~l~ 219 (546)
T 3ugf_A 190 DFKSFKLLEELLHAVPDTGLWECVDLYPVS 219 (546)
T ss_dssp SSSSCEECSSCSEEETTCCCEEEEEEEEEE
T ss_pred CCCCceEcccccccCCCCCeEECCeEEEEC
Confidence 5799998754422111123333 5565543
|
| >3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0094 Score=52.07 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=123.7
Q ss_pred CCeEEEEeCCCcEEEEEEecccc---CCc--e-eEEEEecCCCCCCCCCccCCC-CC-----CCCCCCccEEccCCeEEE
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEV---QKW--S-GCMKRSYNKGVTWSEREQLPP-GI-----LGPSKNKPILLENGLLLC 149 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~---~~~--~-~~~~~S~D~G~TWs~~~~l~~-~~-----~g~~~~~~~~~~~G~~~~ 149 (321)
.+|.++.. +|+.+|+++..... ..+ . ..+.+|+| -.+|+....+.. .. .+...+ -+...+|++++
T Consensus 13 ~DP~i~~~-~g~yYl~~t~~~~~~~~~~~~~~~~~v~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~WAP-~i~~~~Gkyyl 89 (307)
T 3qee_A 13 ADPAALVH-KGRVYLYAGRDEAPDNTTFFVMNEWLVYSSDD-MANWEAHGPGLRAKDFTWAKGDAWAS-QVIERNGKFYW 89 (307)
T ss_dssp EEEEEEEE-TTEEEEEEEEECCSSSSSCCCEEEEEEEEESS-SSSCEEEEEEEEGGGSTTEEEEEEEE-EEEEETTEEEE
T ss_pred CCCceEEE-CCEEEEEEccCcccCCccccccCcEEEEECCC-CCCceECccccccCCCCcccCCccCc-eEEEECCEEEE
Confidence 57887764 78999887642111 011 1 23567766 689987654321 11 111222 23346898765
Q ss_pred eeeccc--CC-CCcEEEEEECCCCceeEEe-e-ceecC------CCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEE
Q 020796 150 GSSVES--WN-SWGSWMEVTVDAGRSWRKY-G-PIYIP------NESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE 218 (321)
Q Consensus 150 ~~~~~~--~~-~~~~~~~~S~D~G~tW~~~-~-~~~~~------~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~ 218 (321)
...... .. ...+.++.|+|-.-.|+.+ . ++... +.....+.|.++...||+.++++... .+++++
T Consensus 90 yyt~~~~~~~~~~~i~va~s~~p~Gpw~~~~~~pl~~~~~~~~~~~~~~~iDp~vf~DddG~~Yl~~g~~----~i~~~~ 165 (307)
T 3qee_A 90 YVTVRHDDTKPGFAIGVAVGDSPIGPFKDALGKALITNDMTTDTPIDWDDIDPSVFIDDDGQAYLFWGNT----RPRYAK 165 (307)
T ss_dssp EEEEEECTTSCSEEEEEEEESSTTCCCEESSSSCSBCGGGCCSSCCSCCSCCCEEEECTTSCEEEEECSS----SCEEEE
T ss_pred EEEeccCCCCCceEEEEEEECCCCCCCEeCCCCeeEecCccccCCCCcCcccCceEECCCCCEEEEEeCC----cEEEEE
Confidence 432211 11 2356788888755589984 2 22211 11223578898888889999987542 344444
Q ss_pred eccCCcCCCCCccCCCCCC---CCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeeccc-CCCceeceEE
Q 020796 219 SCDGGLTWSYAKPTQLLNP---NSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEEN-LAMEFSYPAV 294 (321)
Q Consensus 219 S~D~G~tWs~~~~~~~~~~---~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~~-~~~~~~yp~~ 294 (321)
-.++..+|..... .+..+ ..+..+.. .+|..+|++.......+.+++|.+=--.|....+|... .....++..+
T Consensus 166 l~~d~~~~~g~~~-~i~~~~~~~EgP~i~k-~~g~YyL~~s~~~~~~~~~~~s~~~~GP~~~~~il~~~~~~~g~gH~~~ 243 (307)
T 3qee_A 166 LKKNMVELDGPIR-AIEGLPEFTEAIWVHK-YQDNYYLSYAMGFPEKIGYAMGKSIKGPWVYKGILNEVAGNTPTNHQAI 243 (307)
T ss_dssp ECTTSSSEEEEEE-ECCCCTTEEEEEEEEE-CC-CEEEEEEETTTTEEEEEEESSTTCCCEEEEEEECCCBTCSCCCCEE
T ss_pred ECCccccccCceE-EeCCCCCccCceEEEE-ECCEEEEEEECCCCcEEEEEECCCCCCCcEECCEEecCCCcccCCCccE
Confidence 3344566653221 11111 11234444 67999999876556677888887543358776555532 1224567788
Q ss_pred EEccCCeEEEEEEeCC
Q 020796 295 IQASDGSVHITYTYNR 310 (321)
Q Consensus 295 ~~~~dg~l~v~y~~~~ 310 (321)
++. +|..|++|-..+
T Consensus 244 v~~-~G~~~~~yh~~~ 258 (307)
T 3qee_A 244 IEF-NNKHYFIYHTGA 258 (307)
T ss_dssp EEE-TTEEEEEEEESC
T ss_pred EEe-CCcEEEEEccCc
Confidence 887 899999987643
|
| >1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0036 Score=55.54 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=93.0
Q ss_pred EccCCeEEEeeecccCC-CCcEEEEEECCCCceeEEee-ceecCC-----CCccee-eeeEEEcCCCeEEEEEeecCCCC
Q 020796 141 LLENGLLLCGSSVESWN-SWGSWMEVTVDAGRSWRKYG-PIYIPN-----ESLSVI-QPVPFHTANRTLRVLMRSFNGIG 212 (321)
Q Consensus 141 ~~~~G~~~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~-~~~~~~-----~~~~~~-~~~~~~~~~G~l~~~~r~~~~~~ 212 (321)
+..+|++++....+... .....+++|+|+ .+|+... ++..+. ...++. .|.++.. +|++++++.......
T Consensus 62 i~~~g~~~lfY~~~~~~~~~~~~~A~S~Dg-i~w~~~~~pvl~p~~~~~~~~~g~~yDP~v~~~-~d~yym~yt~~~~~~ 139 (338)
T 1vkd_A 62 VPYNGEFVGVFRIDHKNTRPFLHFGRSKDG-INWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKI-EDTYYITFCTDDHGP 139 (338)
T ss_dssp EEETTEEEEEEEEEETTSCEEEEEEEESSS-SSCEECSSCCCEECTTSCBCCCSSEEEEEEEEE-TTEEEEEEEEESSSE
T ss_pred EEECCEEEEEEEEECCCCcEEEEEEEeCCC-CccEECCCCEEeCCCCCccccCCEEeCcEEEEE-CCEEEEEEEEcCCcc
Confidence 33488776543222211 235668889875 5999752 332221 235663 7888775 468888776522234
Q ss_pred cEEEEEeccCCcCCCCCccCCCCCCCCceeEEEc--CCCcEEEEEeCC-----CCCeEEEEEEcCCCCCCCcceeecc-c
Q 020796 213 RVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKL--KDGRLLLAYNTV-----SRGVLKVALSKDDGDSWHDALTLEE-N 284 (321)
Q Consensus 213 ~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~--~~g~~~lv~~~~-----~r~~l~~~~S~D~G~tW~~~~~l~~-~ 284 (321)
.+.+++|+| +.+|+....+.. +..+-..+.. -+|+.+|+++++ .+..+.++.|.| ..+|.....+-. .
T Consensus 140 ~i~la~S~D-l~~W~~~~~i~~--~~~rd~~~fp~~i~Gky~m~~~~q~~~~~~~~~I~~a~S~D-l~~W~~~~~l~~~~ 215 (338)
T 1vkd_A 140 TIGVGMTKD-FKTFVRLPNAYV--PFNRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPD-MIHWGNHRFVLGRS 215 (338)
T ss_dssp EEEEEEESS-SSSEEEECCSSS--SSEEEEEECSSCBTTBEEEEEEECCSSSCSCCCEEEEEESS-SSCBEEEEEEECCC
T ss_pred eEEEEEECC-CCeEEECCccCC--CcCCceEEEEEEECCEEEEEEEecCCCCCCCcEEEEEEcCC-cccCCcCceEEcCC
Confidence 688899987 789986433221 1112112221 279999998642 456788888875 788987655532 2
Q ss_pred CC--Cce----eceEEEEccCCeEEEEEEe
Q 020796 285 LA--MEF----SYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 285 ~~--~~~----~yp~~~~~~dg~l~v~y~~ 308 (321)
.. .++ ..|..+..++| .+++|..
T Consensus 216 ~~~~wE~~~ig~gp~~i~~~~g-wll~y~G 244 (338)
T 1vkd_A 216 SYNWWENLKIGAGPYPIETSEG-WLLIYHG 244 (338)
T ss_dssp SSCGGGSSEEEECSCCEEETTE-EEEEEEE
T ss_pred CCCCcccCccccCCCcEEeCCc-EEEEEec
Confidence 21 121 25777777777 4455543
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.035 Score=47.93 Aligned_cols=193 Identities=9% Similarity=0.021 Sum_probs=105.5
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cCCC----------CCCCCCeEEEEeCCCc
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DEEP----------NVPMWNPVLFKLPSNG 93 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~~~----------~~~~~~p~l~~~~~G~ 93 (321)
..+.|.++.. +|+.+++..... .. ..+.+.+|+|. +|+....+ ...+ ....+.|.+... +|+
T Consensus 11 ~~~DP~i~~~-~g~yYl~~t~~~--~~--~~i~i~~S~DLv~W~~~g~~l~~~~~w~~~~~~~~~~~~wAP~v~~~-~G~ 84 (293)
T 1uv4_A 11 LLHDPTMIKE-GSSWYALGTGLT--EE--RGLRVLKSSDAKNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYY-NGK 84 (293)
T ss_dssp ECSSCEEEEE-TTEEEEEEECCT--TS--SBEEEEEESSSSSCEEEEEETSSCCGGGGGTSTTCCSBCEEEEEEEE-TTE
T ss_pred cCCCCeEEEE-CCEEEEEEcCCC--CC--CceEEEECCCCCCccCCCccCCCCCcccccccccCCCceecceEEEE-CCE
Confidence 4567899876 688887653321 11 24677888887 99986543 3221 235677988765 899
Q ss_pred EEEEEEecccc-CCceeEEEEecCCC-CCCCCCccC-CCC---CCCCCCCccEEccCCeEEEeeecccCCCCcEEEEEEC
Q 020796 94 LLLFYKIGQEV-QKWSGCMKRSYNKG-VTWSEREQL-PPG---ILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV 167 (321)
Q Consensus 94 l~l~~~~~~~~-~~~~~~~~~S~D~G-~TWs~~~~l-~~~---~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~ 167 (321)
.+|+|+..... ......+..|+|-- -.|+.+..+ ... ....+-+.++...||+.++..... ...+.+...+
T Consensus 85 yylyyt~~~~~~~~~~i~va~s~~p~~Gpw~~~~~~l~~~~~~~~~~iDp~vf~d~dG~~Yl~~g~~---~~~i~~~~l~ 161 (293)
T 1uv4_A 85 YWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSF---WSGIKLTKLD 161 (293)
T ss_dssp EEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBS---TTCEEEEEEC
T ss_pred EEEEEEecCCCCCcceEEEEECCCCCCCCCccCCccEecCCCCCCCCCCCCeEECCCCCEEEEEEec---CCCEEEEEEC
Confidence 99999853211 12234577887643 479876542 211 111122223344679877653211 1245555544
Q ss_pred -CCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCCC
Q 020796 168 -DAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 168 -D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs~ 228 (321)
|.++....+..+...+......| |.++.. +|..++++.... ....+.+++|++----|+.
T Consensus 162 ~d~~~~~g~~~~i~~~~~~~~~~EgP~i~k~-~g~yyL~~s~~~~~~g~~~~y~~~~~~s~~~~GP~~~ 229 (293)
T 1uv4_A 162 KSTMKPTGSLYSIAARPNNGGALEAPTLTYQ-NGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLD 229 (293)
T ss_dssp TTTCSEEEEEEEEECCTTTTTCEEEEEEEEE-TTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBC
T ss_pred chhCccCCcceEEeecCCCCCccCccEEEEE-CCEEEEEEEeCCCcCCCCCcceEEEEEeCCCCCCCCc
Confidence 44443334332322221122344 566654 789888875531 1124677888764345654
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0078 Score=54.65 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=105.2
Q ss_pred CCeEEEEeCCCcEEEEEEeccc--cC--------------CceeEEEEecCCCCCCCCCcc-CCCCCCCC-----CCCcc
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQE--VQ--------------KWSGCMKRSYNKGVTWSEREQ-LPPGILGP-----SKNKP 139 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~--~~--------------~~~~~~~~S~D~G~TWs~~~~-l~~~~~g~-----~~~~~ 139 (321)
.+|..+...+|+.+|+|+.... .+ .....+.+|+| +.+|+.... +.+...+. +..+.
T Consensus 91 ~DP~~v~~~dG~yymfY~~~~~~~~G~~~~~~~~~~~~~~~~~i~~a~S~D-lv~W~~~g~~L~~~~~~~wd~~gv~aP~ 169 (404)
T 4ak5_A 91 RDPSAMLKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKD-GLTWKEQGIAVKRGEKGAYDDRSVFTPE 169 (404)
T ss_dssp ECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESS-SSEEEEEEEEECCCSTTSTTSSEEEEEE
T ss_pred cCCcEEEEECCEEEEEEEeCCCcccccccccccccccccCccEEEEEECCC-CCCceeCceEeecCCCCccccCCEEeeE
Confidence 4566433448999999986432 00 11234667776 689986554 33221111 11122
Q ss_pred EEccCCeEEEeeecccC-----CCCcEEEEEECC-CCceeEEee-ceecCCC---------------------Ccceeee
Q 020796 140 ILLENGLLLCGSSVESW-----NSWGSWMEVTVD-AGRSWRKYG-PIYIPNE---------------------SLSVIQP 191 (321)
Q Consensus 140 ~~~~~G~~~~~~~~~~~-----~~~~~~~~~S~D-~G~tW~~~~-~~~~~~~---------------------~~~~~~~ 191 (321)
++..+|++++....... ....+.+++|++ .| .|+... ++..+.. ...+..|
T Consensus 170 Vi~~~Gkyym~Yt~~~~~~~~~~~~~IgvA~Sdsp~G-pwt~~~~Pvl~~~~~~~W~~ddd~~~~~~~~~~wD~~~~~~P 248 (404)
T 4ak5_A 170 VMEWKGKYYLCYQAVKSPYTVRVKNTIGMACADSPEG-LWTKTDKPVLEPSDTGEWEGDEDNRFKVVSKGDFDSHKVHDP 248 (404)
T ss_dssp EEEETTEEEEEEEEECSCCCTTCCCEEEEEEESSTTC-CCEECSSCSBCCCSCCEECSSSSCTTCEEECCSTTSSEEEEE
T ss_pred EEEECCEEEEEEEeccCCCCCCCcceEEEEEEeCCCC-CceECCCceecCCCCcceeeccCceeeeccCCcccCCcEECC
Confidence 33457886654222111 123567888886 55 698753 2221110 1123457
Q ss_pred eEEEcCCCeEEEEEeecC-C--------CCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCe
Q 020796 192 VPFHTANRTLRVLMRSFN-G--------IGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGV 262 (321)
Q Consensus 192 ~~~~~~~G~l~~~~r~~~-~--------~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~ 262 (321)
.++. .+|++++++.... . ...+.+++|+|.--.|++....++-.......+....++..+|+..+..+..
T Consensus 249 ~v~~-~~g~yyl~Ysg~~~~~~~~~~~~~~~igvA~Sdd~~Gpw~k~~~nPv~~~~~e~~Vw~~~dg~~~ll~~~g~~~g 327 (404)
T 4ak5_A 249 CIIP-YNGKFYMYYKGERMGEEITWGGREIKHGVAIAENPMGPYVKSEYNPISNSGHEVCVWPYKGGIASLITTDGPEKN 327 (404)
T ss_dssp EEEE-ETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCCEECTTCCSCSSCSSCCEEEETTEEEEEECSSSTTCS
T ss_pred EEEE-ECCEEEEEEECCCCCCccccCCCcceEEEEEECCCCCCcEECCCCceecCCCcceEEEeCCcEEEEEEecCCCce
Confidence 7776 4789999886542 1 2368889998854478764211111111122344445555466664432333
Q ss_pred EEEEEEcCCCCCCCcceeeccc
Q 020796 263 LKVALSKDDGDSWHDALTLEEN 284 (321)
Q Consensus 263 l~~~~S~D~G~tW~~~~~l~~~ 284 (321)
.++.|. ||.+|.....+...
T Consensus 328 -~l~~S~-Dg~~W~~~~~l~~~ 347 (404)
T 4ak5_A 328 -TLQWSP-DGINFEIMSVVKGA 347 (404)
T ss_dssp -EEEEES-SSSCCEEEEECSCC
T ss_pred -EEEECC-CCCeEEEeeeeccC
Confidence 566675 59999987766543
|
| >3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0078 Score=56.50 Aligned_cols=222 Identities=16% Similarity=0.204 Sum_probs=116.4
Q ss_pred CCCeE-EEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCcc-CCCC----CCCCCCCccEEccCCeEEEee
Q 020796 81 MWNPV-LFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSEREQ-LPPG----ILGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 81 ~~~p~-l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~~-l~~~----~~g~~~~~~~~~~~G~~~~~~ 151 (321)
..+|. ++. -+|+.+|||+..+....|. -..+.|+| ..+|+.... |.++ ..|+..+.+++..+|++++..
T Consensus 52 mNDPNG~~y-~~G~YHlFYQ~~P~~~~wg~~~WgHa~S~D-LvhW~~~~~aL~P~~~~d~~g~~SGSav~~~dg~~~l~Y 129 (526)
T 3pij_A 52 INDPNGLCF-YKGRWHVFYQLHPYGTQWGPMHWGHVSSTD-MLNWKREPIMFAPSLEQEKDGVFSGSAVIDDNGDLRFYY 129 (526)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEETTCSSSCSBEEEEEEESS-SSSEEECCCCBCCCBGGGTTEEEEEEEEECTTSCEEEEE
T ss_pred eeCCeEEEE-ECCEEEEEEEcCCCCCCcCCcEEEEEEeCC-CCCceeCeeccCCCCccccCCeEeceEEEccCCEEEEEE
Confidence 34455 333 3899999998643322222 13567776 689986433 4442 223344555666677765542
Q ss_pred ecccC------CC---CcEEEEEECCCC-ceeEEeeceecCCC---CcceeeeeEEEcCCCeEEEEE--eecCCCCcEEE
Q 020796 152 SVESW------NS---WGSWMEVTVDAG-RSWRKYGPIYIPNE---SLSVIQPVPFHTANRTLRVLM--RSFNGIGRVCM 216 (321)
Q Consensus 152 ~~~~~------~~---~~~~~~~S~D~G-~tW~~~~~~~~~~~---~~~~~~~~~~~~~~G~l~~~~--r~~~~~~~~~~ 216 (321)
..... .+ ....+++|+|+| .+|++..++...+. ...+..|.+.. .+|+.+|+. +.....+.+.+
T Consensus 130 Tg~~~~~~~~~~~~~~q~q~lA~S~D~gl~~w~K~~pvi~~P~~~~~~~fRDP~V~~-~~g~w~mv~ga~~~~~~G~i~l 208 (526)
T 3pij_A 130 TGHRWANGHDNTGGDWQVQMTALPDNDELTSATKQGMIIDCPTDKVDHHYRDPKVWK-TGDTWYMTFGVSSADKRGQMWL 208 (526)
T ss_dssp EEEEETTSSSGGGCEEEEEEEEEESSTTCSCEEEEEEEECCCGGGEEEEEEEEEEEE-ETTEEEEEEEEEETTSCEEEEE
T ss_pred ecccCcccccCCCCceeEEEEEEECCCCcceEEECCccccCCCCccccccccCEEEE-ECCEEEEEEEEecCCCCcEEEE
Confidence 22110 11 234678999999 99998764432111 12244677765 678877765 33333457888
Q ss_pred EEeccCCcCCCCCccC-CCCCCCCc----eeEEEcCC--C--cEEEEEeCC-----C-----CCeEEEEE-EcCCCCCCC
Q 020796 217 SESCDGGLTWSYAKPT-QLLNPNSG----IDGVKLKD--G--RLLLAYNTV-----S-----RGVLKVAL-SKDDGDSWH 276 (321)
Q Consensus 217 ~~S~D~G~tWs~~~~~-~~~~~~~~----~~~~~~~~--g--~~~lv~~~~-----~-----r~~l~~~~-S~D~G~tW~ 276 (321)
.+|.| .++|+....+ ..+..... +.+..+.+ | +.+|++-.. . .....+.+ ..|.|.+|.
T Consensus 209 y~S~D-l~~W~~~g~l~~~~~~~g~mwECPdlf~l~~~~g~~k~vL~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~f~ 287 (526)
T 3pij_A 209 FSSKD-MVRWEYERVLFQHPDPDVFMLECPDFSPIKDKDGNEKWVIGFSAMGSKPSGFMNRNVSNAGYMIGTWEPGGEFK 287 (526)
T ss_dssp EEESS-SSSCEEEEEEEECSCTTCCEEEEEEEEEEECTTSCEEEEEEEEEESCCCBTTBSCSSSEEEEEEEEECTTSCEE
T ss_pred EECCC-CCcceEcCcccccCCCccCeEECCEEEEECCCCCceeEEEEEeccccCCCccccccccceeEEEEEEcCCCcEE
Confidence 88877 7999864431 11122111 23455542 2 556654211 0 11222223 456467775
Q ss_pred cc---eeecccCCCceeceEEEEccCC-eEEEEEEeC
Q 020796 277 DA---LTLEENLAMEFSYPAVIQASDG-SVHITYTYN 309 (321)
Q Consensus 277 ~~---~~l~~~~~~~~~yp~~~~~~dg-~l~v~y~~~ 309 (321)
+. ..++.+. + -|..-+..++| ++.+.|..+
T Consensus 288 ~~~~~~~lD~G~--d-fYA~qtf~~~gRri~~gW~~~ 321 (526)
T 3pij_A 288 PETEFRLWDCGH--N-YYAPQSFNVDGRQIVYGWMSP 321 (526)
T ss_dssp ESSCCEESCCSS--S-CEEEEEEEETTEEEEEEEECC
T ss_pred ECCcceeeeeCC--C-ccccceeCCCCCEEEEEecCC
Confidence 32 2344331 2 24443333666 567778664
|
| >3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0047 Score=54.05 Aligned_cols=226 Identities=8% Similarity=0.013 Sum_probs=121.0
Q ss_pred ccccceEEEe-cCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cCCC--C---CCCCCeEEEEeC---CCcE
Q 020796 26 SCHASTIVEV-DKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DEEP--N---VPMWNPVLFKLP---SNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~-~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~~~--~---~~~~~p~l~~~~---~G~l 94 (321)
..+.|.|+.. ++|+++++.......+.....+.+.+|+|- +|+....+ .... . ...+.|.++..+ +|+.
T Consensus 14 ~~~DP~i~~~~~dg~yyl~~t~~~~~~~~~~~~~~~~S~DLv~W~~~g~~l~~~~~~~~~~~~~wAP~v~~~~~~~~Gky 93 (311)
T 3qz4_A 14 FHADPEVLYSHQTKRYYIYPTSDGFPGWGGSYFKVFSSKNLKTWKEETVILEMGKNVSWANGNAWAPCIEEKKIDGKYKY 93 (311)
T ss_dssp SEEEEEEEEETTTTEEEEEEEECSSGGGCCCEECCEEESSSSSCEECCCCEEBTTTBTTEEEEEEEEEEEEEEETTEEEE
T ss_pred CcCCceEEEECCCCEEEEEEecCCCCCCCCcEEEEEECCCCCCcEECceecccccCCCcccCCcCCCeeEEeeecCCCEE
Confidence 4578998776 358888754321111222334777888997 99975432 2211 1 246678887765 8999
Q ss_pred EEEEEecccc-CCceeEEEEecCCCCCCCCCcc-C-CCCCCC---CCCCccEEcc-CCeEEEeeecccCCCCcEEEEEEC
Q 020796 95 LLFYKIGQEV-QKWSGCMKRSYNKGVTWSEREQ-L-PPGILG---PSKNKPILLE-NGLLLCGSSVESWNSWGSWMEVTV 167 (321)
Q Consensus 95 ~l~~~~~~~~-~~~~~~~~~S~D~G~TWs~~~~-l-~~~~~g---~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~S~ 167 (321)
+|+|+..... ......++.|+|-...|+.... + .....+ .+-..++... ||+.++.... ..+.+...+
T Consensus 94 ylyyt~~~~~~~~~~i~va~s~~p~Gpw~~~~~p~~~~~~~g~~~~iDp~vf~dd~dG~~yl~~g~-----~~i~~~~l~ 168 (311)
T 3qz4_A 94 FFYYSANPTTNKGKQIGVAVADSPTGPFTDLGKPIITSSPTGRGQQIDVDVFTDPVSGKSYLYWGN-----GYMAGAELN 168 (311)
T ss_dssp EEEEEEEETTCSSCEEEEEEESSTTCCCEECSSCSBCSCTTSSSBSCCCEEEECTTTCCEEEEECB-----SSCEEEEBC
T ss_pred EEEEEeccCCCCCeeEEEEEECCCCCCceECCcceEcCCCCCCcccccccEEEECCCCcEEEEEcC-----CCEEEEEeC
Confidence 9998863221 1234567888876567886321 2 221111 1222334444 7888765321 245566655
Q ss_pred CCCceeEEeeceecCCCC-----cceee-eeEEEcCCCeEEEEEeecCC---CCcEEEEEeccCCcCCCCCcc--CCCCC
Q 020796 168 DAGRSWRKYGPIYIPNES-----LSVIQ-PVPFHTANRTLRVLMRSFNG---IGRVCMSESCDGGLTWSYAKP--TQLLN 236 (321)
Q Consensus 168 D~G~tW~~~~~~~~~~~~-----~~~~~-~~~~~~~~G~l~~~~r~~~~---~~~~~~~~S~D~G~tWs~~~~--~~~~~ 236 (321)
+++.+|.........+.. ....| |.++. .+|.+++++..... ...+.+++|++----|+.... +-...
T Consensus 169 ~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k-~~g~YyL~~s~~~~~~~~y~~~~~~S~~~~GPw~~~~~~pil~~~ 247 (311)
T 3qz4_A 169 DDMLSIKEETTVVLTPKGGTLQTYAYREAPYVIY-RKGIYYFFWSVDDTGSPNYHVVYGTAQSPLGPIEVAKEPIVLIQN 247 (311)
T ss_dssp TTSSSBCGGGCEECCCCCCCTTTTCCCEEEEEEE-ETTEEEEEEEESCTTSTTCEEEEEEESSTTCCCEEEEEEEEECCB
T ss_pred CcccccCCCceEEeCCCCCcccccceeeccEEEE-ECCEEEEEEEcCCCCCCCceEEEEEcCCCCCCCEeCCCCcEEecC
Confidence 556666543211112111 11334 56665 47899988865431 236778888874334765320 10111
Q ss_pred CC-----Cc-eeEEEcCCC-cEEEEEeC
Q 020796 237 PN-----SG-IDGVKLKDG-RLLLAYNT 257 (321)
Q Consensus 237 ~~-----~~-~~~~~~~~g-~~~lv~~~ 257 (321)
+. .+ ..++..++| +.+|+|..
T Consensus 248 ~~~~~~g~gH~~~~~~~~g~~w~~~yh~ 275 (311)
T 3qz4_A 248 PKEEIYGPAHNSILQVPGKDKWYIVYHR 275 (311)
T ss_dssp GGGTBEEEEEEEEEECTTSSCEEEEEEE
T ss_pred CCCceEcCCCCeEEEcCCCCEEEEEEec
Confidence 10 11 234566664 77788753
|
| >4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.03 Score=52.12 Aligned_cols=219 Identities=13% Similarity=0.151 Sum_probs=117.0
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCCcee-EEEEecCCCCCCCCCcc-CCC-CCCCCCCCccEEccCCe-------EEEe
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWSG-CMKRSYNKGVTWSEREQ-LPP-GILGPSKNKPILLENGL-------LLCG 150 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~~~~-~~~~S~D~G~TWs~~~~-l~~-~~~g~~~~~~~~~~~G~-------~~~~ 150 (321)
..+|.-+.--+|+.+|||+..+....|.. ..+.|+| ..+|+.... |.+ ...|+..+.+++..+|. +++.
T Consensus 13 mNDPNG~~y~~G~YHlFYQ~~P~~~~~g~WgHa~S~D-LvhW~~~~~aL~P~~~~g~~SGSav~~~~~~~g~~~~~~~l~ 91 (492)
T 4ffh_A 13 LCNPQRPVTTHGAYQLYYLHSDQNNGPGGWDHASTTD-GVAFTHHGTVMPLRPDFPVWSGSAVVDTANTAGFGAGAVVAL 91 (492)
T ss_dssp EEEEEEEEEETTEEEEEEEEESSTTCCCEEEEEEESS-SSSCEEEEEEECCBTTBCCCCEEEEEETTCSSSSCTTEEEEE
T ss_pred eeCCeeeEEECCEEEEEEECCCCCCCCCcEEEEEeCC-CCccEECCCCCCCCCCCCEEeceEEEeCCCccccCCCcEEEE
Confidence 33453222248999999986433222221 3556776 599986433 444 33455555666666653 4332
Q ss_pred eeccc----CCCCcEEEEEECCCCceeEEe-eceecCCCCcc------------eeeeeEEEc-CCCeEEEEEeecCCCC
Q 020796 151 SSVES----WNSWGSWMEVTVDAGRSWRKY-GPIYIPNESLS------------VIQPVPFHT-ANRTLRVLMRSFNGIG 212 (321)
Q Consensus 151 ~~~~~----~~~~~~~~~~S~D~G~tW~~~-~~~~~~~~~~~------------~~~~~~~~~-~~G~l~~~~r~~~~~~ 212 (321)
|... .......+++|+|+|.+|++. .|+..++.... ...|.+... .+|+.+|+. .. .+
T Consensus 92 -YTg~~~~~~~~q~q~lA~S~D~g~~w~k~~nPvi~~p~~~~~~~~~~~~~~~~fRDP~V~~~~~~g~w~mv~-a~--~~ 167 (492)
T 4ffh_A 92 -ATQPTDGVRKYQEQYLYWSTDGGFTFTALPDPVIVNTDGRAATTPAEIENAEWFRDPKIHWDTARGEWVCVI-GR--LR 167 (492)
T ss_dssp -EEEEGGGCGGGEEEEEEEESSSSSSCEECSSCSBCCTTTTTCCSHHHHHHHTCEEEEEEEEETTTTEEEEEE-EE--TT
T ss_pred -EeecccCCCCcEEEEEEEeCCCCceEEEcCccccCCCCccccccccccccCCCCcCCEEEEECCCCEEEEEE-EC--CC
Confidence 2210 112345688999999999986 24432212112 567888865 578888777 33 25
Q ss_pred cEEEEEeccCCcCCCCCccCCCCCCCC----ceeEEEcCC----CcEEEEEeC--C----CCCeEEEEEEcCCCCCCCcc
Q 020796 213 RVCMSESCDGGLTWSYAKPTQLLNPNS----GIDGVKLKD----GRLLLAYNT--V----SRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 213 ~~~~~~S~D~G~tWs~~~~~~~~~~~~----~~~~~~~~~----g~~~lv~~~--~----~r~~l~~~~S~D~G~tW~~~ 278 (321)
.+.+.+|.| .++|+....+..+.... .+.+.++.. ++.+|++.. . .....++.=..| |.+|.+.
T Consensus 168 ~i~ly~S~D-L~~W~~~~~~~~~~~~g~mwECPdlf~l~~~~~~~k~vL~~s~~~~~~~~~~~~~Y~vG~~d-~~~f~~~ 245 (492)
T 4ffh_A 168 YAAFYTSPN-LRDWTLRRNFDYPNHALGGIECPDLFEITADDGTRHWVLAASMDAYGIGLPMTYAYWTGTWD-GEQFHAD 245 (492)
T ss_dssp EEEEEEESS-SSSCEECCCEECSCGGGCCCEEEEEEEEECTTSCEEEEEEEECCCGGGTCCSSEEEEEEEEC-SSCEEES
T ss_pred eEEEEECCC-CCCceEeccccccCCccceEECCeEEEECCCCCCceEEEEEccCCCCCCCccceEEEEEEee-CCEEEeC
Confidence 777788877 79998654332221111 133445442 466666542 1 122223223445 6777532
Q ss_pred ----eeecccCCCceeceEEEEc----cCC-eEEEEEEeC
Q 020796 279 ----LTLEENLAMEFSYPAVIQA----SDG-SVHITYTYN 309 (321)
Q Consensus 279 ----~~l~~~~~~~~~yp~~~~~----~dg-~l~v~y~~~ 309 (321)
..++.+ .+ -|..-+.. ++| ++.+.|-.+
T Consensus 246 ~~~~~~lD~G--~d-fYA~qtf~~~~~~~grri~~gW~~~ 282 (492)
T 4ffh_A 246 DLTPQWLDWG--WD-WYAAVTWPSIDAPETKRLAIAWMNN 282 (492)
T ss_dssp CSSCEESCCS--SC-CEEEEEEECSSCTTTCEEEEEECCC
T ss_pred CCCccceeeC--CC-cccCCeEccCCCCCCCEEEEEecCC
Confidence 333332 12 35554443 344 677888665
|
| >1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0098 Score=54.58 Aligned_cols=163 Identities=14% Similarity=0.198 Sum_probs=94.1
Q ss_pred EccCCeEEEeeeccc----CCCCcEEEEEECCCCceeEEeeceecCCC-CcceeeeeEEEcCCCeEEEEEeecCC-----
Q 020796 141 LLENGLLLCGSSVES----WNSWGSWMEVTVDAGRSWRKYGPIYIPNE-SLSVIQPVPFHTANRTLRVLMRSFNG----- 210 (321)
Q Consensus 141 ~~~~G~~~~~~~~~~----~~~~~~~~~~S~D~G~tW~~~~~~~~~~~-~~~~~~~~~~~~~~G~l~~~~r~~~~----- 210 (321)
...+|...+...... +.......+.|+| +.+|+...++..+.. ..++..++++. .+|++++++.....
T Consensus 22 ~~~~G~yhlfyq~~p~~~~~g~~~wgha~S~D-lv~W~~~~~aL~p~~~~~g~~sgsav~-~~g~~~l~YTg~~~~~~~~ 99 (432)
T 1w2t_A 22 IFWKGKYHMFYQYNPRKPEWGNICWGHAVSDD-LVHWRHLPVALYPDDETHGVFSGSAVE-KDGKMFLVYTYYRDPTHNK 99 (432)
T ss_dssp EEETTEEEEEEEEETTSSSCCSCEEEEEEESS-SSSCEEEEEEECCSSTTEEEEEEEEEE-ETTEEEEEEEEEECCCSSC
T ss_pred eEECCEEEEEEecCCCCCCCCCcEEEEEEcCC-CcCeEECCccCCCCCCCCCEEeeEEEE-ECCEEEEEEecCccCCCCC
Confidence 345787654321111 1223455678887 899998764332322 24566677765 57899998854321
Q ss_pred --CCcEEEEEeccCCcCCCCC--ccCCCCCCCC-----c-eeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCCCCCCCc
Q 020796 211 --IGRVCMSESCDGGLTWSYA--KPTQLLNPNS-----G-IDGVKLKDGRLLLAYNTV---SRGVLKVALSKDDGDSWHD 277 (321)
Q Consensus 211 --~~~~~~~~S~D~G~tWs~~--~~~~~~~~~~-----~-~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~G~tW~~ 277 (321)
...+.+++|.| |.+|++. .++-.+.+.. + +.+.. .+|+.+|++... .+..+.++.|. |+.+|+.
T Consensus 100 ~~~~~q~lA~S~D-~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~-~dg~~~m~~g~~~~~~~g~i~ly~S~-Dl~~W~~ 176 (432)
T 1w2t_A 100 GEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNR-SNGEWRMVLGSGKDEKIGRVLLYTSD-DLFHWKY 176 (432)
T ss_dssp CCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEE-CSSSEEEEEEEEETTTEEEEEEEEES-SSSSCEE
T ss_pred CceEEEEEEEeCC-CCeEEecCCCceEeCCCccccccccCCEEEE-ECCEEEEEEEEecCCCCcEEEEEECC-CCCCceE
Confidence 12477899999 5699873 2221111211 1 22333 489999987532 23457777776 5899987
Q ss_pred ceeecc-cCCCceeceEEEEccCCeEEEEEEeC
Q 020796 278 ALTLEE-NLAMEFSYPAVIQASDGSVHITYTYN 309 (321)
Q Consensus 278 ~~~l~~-~~~~~~~yp~~~~~~dg~l~v~y~~~ 309 (321)
...+.. ......-.|.+...+ |.-+++|..+
T Consensus 177 ~g~~~~~~~g~~~EcP~lf~~~-g~~vL~~s~~ 208 (432)
T 1w2t_A 177 EGAIFEDETTKEIDCPDLVRIG-EKDILIYSIT 208 (432)
T ss_dssp EEEEEEETTCSCCEEEEEEEET-TEEEEEEEET
T ss_pred ccccccCCCCCEEECCeEEEEC-CEEEEEEeCC
Confidence 654432 112235568888864 5666666653
|
| >3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0068 Score=56.59 Aligned_cols=193 Identities=9% Similarity=0.056 Sum_probs=104.2
Q ss_pred cce-EEEec-CCcEEEEEecCCC-CCCC-CcEEEEEEeCCC-CcCC-cEEccCCC-CCCCCCeEEEEeC-----------
Q 020796 29 AST-IVEVD-KGHFLVAYFGGSC-EGAP-DVKIWLQTFKDG-RWQS-PIIADEEP-NVPMWNPVLFKLP----------- 90 (321)
Q Consensus 29 ~p~-l~~~~-~g~l~~~~~~~~~-~g~~-~~~i~~s~s~~G-tWs~-~~~~~~~~-~~~~~~p~l~~~~----------- 90 (321)
.|- ++..+ +|..++.|.-... ...+ .+..--++|+|. +|+. +..+.++. ...+...+.+.+.
T Consensus 24 DPNG~~y~~~~G~YHlFYQ~nP~~~~wg~~~~WGHa~S~DLvhW~~~~~aL~P~~d~~G~~SGSav~d~~~t~g~~~~~~ 103 (509)
T 3kf3_A 24 DPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSNDLVHWDEHEIAIGPEHDNEGIFSGSIVVDHNNTSGFFNSSI 103 (509)
T ss_dssp EEEEEEEETTTTEEEEEEEEETTCSSCCSSBEEEEEEESSSSSCEECSCCBCCSSTTCEEEEEEEEECTTCTTSCCCTTS
T ss_pred CCcceEEeCCCCEEEEEEecCCCCCCCCCcCEEEEEEccCCCCcEECcccccccccCCCEEeceEEEeCCcccccccccc
Confidence 344 66665 6888887633222 1122 356667889998 9997 34444332 2234455555543
Q ss_pred --CCcEEEEEEeccccCCceeEEEEecCCCCCCCCCc--cCCCCCCCCCCCccEEc--cCCeEEEeeecccCCCCcEEEE
Q 020796 91 --SNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE--QLPPGILGPSKNKPILL--ENGLLLCGSSVESWNSWGSWME 164 (321)
Q Consensus 91 --~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~--~l~~~~~g~~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~ 164 (321)
+|+++++|+. ........++++|+|+|.+|.+.. ++........+.+-+.. .+|.|++..... ....+.++
T Consensus 104 ~p~~~l~~~YTg-~~~~~q~q~lA~S~D~g~~~~k~~~nPVi~~~~~~fRDPkVfw~~~~g~w~Mv~g~~--~~g~i~ly 180 (509)
T 3kf3_A 104 DPNQRIVAIYTN-NIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHEDSNQWIMVVSKS--QEYKIQIF 180 (509)
T ss_dssp CGGGCEEEEEEE-EETTEEEEEEEEESSSSSSCEECTTCCSBCCSCSSCEEEEEEEETTTTEEEEEEEEG--GGTEEEEE
T ss_pred CCCCceEEEECC-CCCCCeeEEEEEECCCCcceEEcCCCceEcCCCCcccCCeEEEECCCCEEEEEEEEC--CCCEEEEE
Confidence 4689999984 222333457899999999998642 22111111123233332 357876543221 11235566
Q ss_pred EECCCCceeEEeeceecCCCCcc-eee-eeEEEcC-----CCeEEEEEeecC-----CCCcEEEEEeccCCcCCCC
Q 020796 165 VTVDAGRSWRKYGPIYIPNESLS-VIQ-PVPFHTA-----NRTLRVLMRSFN-----GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 165 ~S~D~G~tW~~~~~~~~~~~~~~-~~~-~~~~~~~-----~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tWs~ 228 (321)
.|+ +.++|+....+.. + ..| ..| |.++.++ +++.++++..+. .....|+.=..| |.+|.+
T Consensus 181 ~S~-DL~~W~~~~~~~~-~-~~G~mwECPdlf~l~~~~~~~~k~vL~~s~~~~~p~g~~~~~Y~vG~~d-~~~f~~ 252 (509)
T 3kf3_A 181 GSA-NLKNWVLNSNFSS-G-YYGNQYECPGLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFD-GFQFVP 252 (509)
T ss_dssp EES-SSSSCEEEEEECC-B-CCCSCEEEEEEEEEEBTTSSCEEEEEEEEECSCCTTSSCEEEEEEEEEC-SSCEEE
T ss_pred ECC-CCCCceEcccccc-C-CccceeECCeEEEECccCCCCceEEEEEccCCCCCCCCCceEEEEEEEe-CCEEEe
Confidence 665 5799998775532 2 223 233 6777664 356566553221 112344444456 567754
|
| >4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.011 Score=53.65 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=106.5
Q ss_pred ccceEEEecCCcEEEEEecCCC--CCC------------CCcEEEEEEeCCC-CcCCcEE-ccCCC-----CCCCCCeEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSC--EGA------------PDVKIWLQTFKDG-RWQSPII-ADEEP-----NVPMWNPVL 86 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~--~g~------------~~~~i~~s~s~~G-tWs~~~~-~~~~~-----~~~~~~p~l 86 (321)
+.|..+...+|++++.|..... .|. ....|..++|+|+ +|+.... +...+ ....+.|.+
T Consensus 91 ~DP~~v~~~dG~yymfY~~~~~~~~G~~~~~~~~~~~~~~~~~i~~a~S~Dlv~W~~~g~~L~~~~~~~wd~~gv~aP~V 170 (404)
T 4ak5_A 91 RDPSAMLKIGDTYYVWYSKSYGPTQGFAGDIEKDKVFPWDRCDIWYATSKDGLTWKEQGIAVKRGEKGAYDDRSVFTPEV 170 (404)
T ss_dssp ECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESSSSEEEEEEEEECCCSTTSTTSSEEEEEEE
T ss_pred cCCcEEEEECCEEEEEEEeCCCcccccccccccccccccCccEEEEEECCCCCCceeCceEeecCCCCccccCCEEeeEE
Confidence 4577555567999987754331 121 2467889999998 9997543 33321 123567887
Q ss_pred EEeCCCcEEEEEEecccc----CCceeEEEEecC-CCCCCCCCcc--CCCCCCC----------------C-----CCCc
Q 020796 87 FKLPSNGLLLFYKIGQEV----QKWSGCMKRSYN-KGVTWSEREQ--LPPGILG----------------P-----SKNK 138 (321)
Q Consensus 87 ~~~~~G~l~l~~~~~~~~----~~~~~~~~~S~D-~G~TWs~~~~--l~~~~~g----------------~-----~~~~ 138 (321)
+.. +|+.+|+|+..... ......++.|++ .| .|+.... +.+...+ . +..+
T Consensus 171 i~~-~Gkyym~Yt~~~~~~~~~~~~~IgvA~Sdsp~G-pwt~~~~Pvl~~~~~~~W~~ddd~~~~~~~~~~wD~~~~~~P 248 (404)
T 4ak5_A 171 MEW-KGKYYLCYQAVKSPYTVRVKNTIGMACADSPEG-LWTKTDKPVLEPSDTGEWEGDEDNRFKVVSKGDFDSHKVHDP 248 (404)
T ss_dssp EEE-TTEEEEEEEEECSCCCTTCCCEEEEEEESSTTC-CCEECSSCSBCCCSCCEECSSSSCTTCEEECCSTTSSEEEEE
T ss_pred EEE-CCEEEEEEEeccCCCCCCCcceEEEEEEeCCCC-CceECCCceecCCCCcceeeccCceeeeccCCcccCCcEECC
Confidence 665 89999999853221 123456788876 45 6875321 1111100 0 1112
Q ss_pred cEEccCCeEEEeeeccc------CC--CCcEEEEEECCCCceeEEee--ceecCCCCcceeeeeEEEcCCCeEEEEEeec
Q 020796 139 PILLENGLLLCGSSVES------WN--SWGSWMEVTVDAGRSWRKYG--PIYIPNESLSVIQPVPFHTANRTLRVLMRSF 208 (321)
Q Consensus 139 ~~~~~~G~~~~~~~~~~------~~--~~~~~~~~S~D~G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~ 208 (321)
.++..+|++++...... +. ...+.+++|+|---.|+... |+... + .++.+...++|..+++.+..
T Consensus 249 ~v~~~~g~yyl~Ysg~~~~~~~~~~~~~~~igvA~Sdd~~Gpw~k~~~nPv~~~----~-~e~~Vw~~~dg~~~ll~~~g 323 (404)
T 4ak5_A 249 CIIPYNGKFYMYYKGERMGEEITWGGREIKHGVAIAENPMGPYVKSEYNPISNS----G-HEVCVWPYKGGIASLITTDG 323 (404)
T ss_dssp EEEEETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCCEECTTCCSCSS----C-SSCCEEEETTEEEEEECSSS
T ss_pred EEEEECCEEEEEEECCCCCCccccCCCcceEEEEEECCCCCCcEECCCCceecC----C-CcceEEEeCCcEEEEEEecC
Confidence 23345787765422211 11 23567888987534698752 33211 1 23456666665546665443
Q ss_pred CCCCcEEEEEeccCCcCCCCCc
Q 020796 209 NGIGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 209 ~~~~~~~~~~S~D~G~tWs~~~ 230 (321)
...+ .+.+|.| |..|....
T Consensus 324 ~~~g--~l~~S~D-g~~W~~~~ 342 (404)
T 4ak5_A 324 PEKN--TLQWSPD-GINFEIMS 342 (404)
T ss_dssp TTCS--EEEEESS-SSCCEEEE
T ss_pred CCce--EEEECCC-CCeEEEee
Confidence 3333 4456877 89998643
|
| >3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.018 Score=52.29 Aligned_cols=198 Identities=14% Similarity=0.081 Sum_probs=103.6
Q ss_pred CCCeEEEEeCCCcEEEEEEecccc--C--------------CceeEEEEecCCCCCCCCCcc-CCCCCCCC-----CCCc
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEV--Q--------------KWSGCMKRSYNKGVTWSEREQ-LPPGILGP-----SKNK 138 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~--~--------------~~~~~~~~S~D~G~TWs~~~~-l~~~~~g~-----~~~~ 138 (321)
..+|..+...+|+.+|+|+..... + .....+++|+| +.+|+.... +.+...+. +..+
T Consensus 95 ~~DP~~vi~~dG~Yylfyt~~~~~~~G~~~~~~~~~~~p~~~~~i~~A~S~D-lv~W~~~g~~l~~~~~~~wd~~gv~aP 173 (408)
T 3p2n_A 95 RRDPSAIIKENGKYYVWYSKSTGPTQGFGGDIEKDKVFPWDRCDIWYATSED-GWTWKEEGPAVTRGEKGAYDDRSVFTV 173 (408)
T ss_dssp EECCCCBEEETTEEEEEEEEEESCCCCSSSCTTTSCCSTTTTCEEEEEEESS-SSEEEEEEEEECCCSTTSTTSSEEEEE
T ss_pred eCCCCEEEEECCEEEEEEEeCCCcccccccccccccccccccceEEEEEcCC-CCeeeEeCceeCCCCCCCcccCceEee
Confidence 345662223489999999853210 0 11234677876 689987654 32221111 1112
Q ss_pred cEEccCCeEEEeeec--ccCC---CCcEEEEEEC-CCCceeEEee-ceecCC------------------C---Ccceee
Q 020796 139 PILLENGLLLCGSSV--ESWN---SWGSWMEVTV-DAGRSWRKYG-PIYIPN------------------E---SLSVIQ 190 (321)
Q Consensus 139 ~~~~~~G~~~~~~~~--~~~~---~~~~~~~~S~-D~G~tW~~~~-~~~~~~------------------~---~~~~~~ 190 (321)
.++..+|+.++.... .... .....+.+++ .+|. |+... ++..+. . ..++..
T Consensus 174 sVi~~dGkYyL~Yt~~~~~~~~~~~~~i~va~A~S~DG~-W~~~~~pli~~~~~~~~~~e~d~~~~~~~~~~wd~~~v~~ 252 (408)
T 3p2n_A 174 EIMKWEDKYYLCYQTVKSPYNVRVKNQVGLAWADSPDGP-WTKSEEPILSPADNGVWKGEEQDRFAVIKKGDFDSHKVHD 252 (408)
T ss_dssp EEEEETTEEEEEEEEECSSCCTTCCCEEEEEEESSTTCC-CEECSSCSBCCCSCCEECSSSCCTTCEEECCSTTSSEEEE
T ss_pred EEEEECCEEEEEEEeecCCCCCcCCCceEEEEEECCCCC-EEECCcceeCCCCCceEEEecCCcccccccceecCCCeEc
Confidence 233457887553211 1111 1233343332 3466 99853 332111 0 122345
Q ss_pred eeEEEcCCCeEEEEEeecCC---------CCcEEEEEeccCCcCCCCCc--cCCCCCCCCceeEEEcCCCcEEEEEeCCC
Q 020796 191 PVPFHTANRTLRVLMRSFNG---------IGRVCMSESCDGGLTWSYAK--PTQLLNPNSGIDGVKLKDGRLLLAYNTVS 259 (321)
Q Consensus 191 ~~~~~~~~G~l~~~~r~~~~---------~~~~~~~~S~D~G~tWs~~~--~~~~~~~~~~~~~~~~~~g~~~lv~~~~~ 259 (321)
|.++. .+|++++++..... ...+.+++|+|..-.|+... ++-...+ ...+....+|..+|+.++.
T Consensus 253 P~v~~-~~G~yyl~Ys~~~~g~~~~~~~~~~~igvA~Sdd~~Gpw~k~~~nPVl~~~~--dp~Vw~~~dG~y~mi~~~g- 328 (408)
T 3p2n_A 253 PCIIP-YKGKFYLYYKGEQMGEAITFGGRQIRHGVAIADNPKGPYVKSPYNPISNSGH--EICVWPYNGGIASLITTDG- 328 (408)
T ss_dssp EEEEE-ETTEEEEEEEEECTTCCEETTEECCEEEEEEESSTTCCCEECTTCCSCSSCS--SCCEEEETTEEEEEECSSS-
T ss_pred ceEEE-ECCEEEEEEEcccCccccccCCCccEEEEEEECCCCCCcEECCCCCcccCCC--CCeeEecCCCEEEEEEECC-
Confidence 67665 47899998865421 24678899988655798742 2211111 2334445678777776432
Q ss_pred CCeEEEEEEcCCCCCCCcceeecccC
Q 020796 260 RGVLKVALSKDDGDSWHDALTLEENL 285 (321)
Q Consensus 260 r~~l~~~~S~D~G~tW~~~~~l~~~~ 285 (321)
.....+..|. ||.+|.....+...+
T Consensus 329 ~gh~~i~~S~-Dg~~W~~~~~i~~~p 353 (408)
T 3p2n_A 329 PEKNTIQWAP-DGINFEIKSVIPGVN 353 (408)
T ss_dssp TTCSEEEEES-SSSCCEEEEECSCCS
T ss_pred CCcEEEEECC-CCCEEEEEeecccCC
Confidence 2233456665 689999877665544
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.015 Score=54.85 Aligned_cols=177 Identities=13% Similarity=0.157 Sum_probs=100.5
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CCC-CCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEE---
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EGA-PDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLF--- 97 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g~-~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~--- 97 (321)
.....|.|.. .+|++++.|..... .+. .+..+.+.++++ |.|+.|..+. ....+|.++.+.+|+.||+
T Consensus 72 ~~~wAP~i~~-~~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~----~~~iDp~vf~D~dG~~Yl~~~~ 146 (528)
T 1yrz_A 72 GGIWAPCLSY-HDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLN----SSGFDPSLFHDDDGRKWLVNMI 146 (528)
T ss_dssp CEECSCEEEE-ETTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEECC----CSCSCCEEEECTTSCEEEEEEE
T ss_pred CCEECCeEEE-ECCEEEEEEecccCCCCCcccceEEEEEeCCCCCCccccEECC----CCcCCCceEECCCCCEEEEEee
Confidence 4467899987 46899987754221 121 123467777775 5899987652 2457899999889999999
Q ss_pred EEeccccCCc-eeEEEE-ecCCCCCCCCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCcee
Q 020796 98 YKIGQEVQKW-SGCMKR-SYNKGVTWSEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 98 ~~~~~~~~~~-~~~~~~-S~D~G~TWs~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW 173 (321)
|......... .+.+.. +.|.++..+++..+..+. ....+++.+...+|..++...... ...+.+.+++|++=---|
T Consensus 147 ~~~~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~~g~~~~~~~~~~rs~~~~GP~ 226 (528)
T 1yrz_A 147 WDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPY 226 (528)
T ss_dssp ECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred ccCCCCCCCCCeEEEEEECCccCCCCCCCEEEEcCCCCCccCCCEEEEECCEEEEEEeCCCCCCCcEEEEEEECCCCCCC
Confidence 4321111011 234555 444433334444443321 112444445556888766533211 123457889998643468
Q ss_pred EEee--ceecCC-----CCcceeeeeEEEcCCCeEEEEEe
Q 020796 174 RKYG--PIYIPN-----ESLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~~--~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r 206 (321)
+... ++.... ...+.-+.+++..++|+.++++.
T Consensus 227 ~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~~~~~~~ 266 (528)
T 1yrz_A 227 ETDPSYPLVTSTGQPELALQKAGHGSLVETQNGEWYLAHL 266 (528)
T ss_dssp EECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred CcCCCCeEEEecCCCCCceEcCCcCeEEECCCCCEEEEEE
Confidence 8752 343221 11233356788888999877764
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.11 Score=46.31 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=54.9
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-CC-CcCCcEEccC-CCCC-----CCCCe
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-DG-RWQSPIIADE-EPNV-----PMWNP 84 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-~G-tWs~~~~~~~-~~~~-----~~~~p 84 (321)
|.-+|+=..+++...+...=+.+=++-|++=|..+..+|..+..+...+|. || ||+.|+.+.+ .|.+ .++..
T Consensus 73 k~~l~kITdtp~YnAWpQDK~FvyenVIyaP~m~g~rHGv~~LhvswVrSgDdG~TWstPEwLtd~Hp~yptvnyHCmSM 152 (670)
T 3ju4_A 73 QGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSM 152 (670)
T ss_dssp SEEEEECCCCSSEEECCTTCCEEETTEEEEEEEEESSSSSTTCEEEEEEESSTTSSCCCCEECSCCCTTTTTEEEECBCE
T ss_pred eeeEEEEecChhhccCcccceeeeccEeeeeeecccccCccceeEEEEEecCCCCcccCchhhhhcCCCCCccceeeeee
Confidence 344566666665554433333333578889999988899999999888986 48 9999998864 3332 23333
Q ss_pred EEEEeCCCcEEEEEE
Q 020796 85 VLFKLPSNGLLLFYK 99 (321)
Q Consensus 85 ~l~~~~~G~l~l~~~ 99 (321)
.++ ..+|+++..
T Consensus 153 Gv~---~NRLfa~iE 164 (670)
T 3ju4_A 153 GVC---RNRLFAMIE 164 (670)
T ss_dssp EEE---TTEEEEEEE
T ss_pred eee---cceeeEEEe
Confidence 332 456776644
|
| >3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.096 Score=49.24 Aligned_cols=200 Identities=9% Similarity=0.020 Sum_probs=110.5
Q ss_pred CCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEcc-CCC-----CCCCCCeEEEEe-CCCcEE
Q 020796 24 FKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIAD-EEP-----NVPMWNPVLFKL-PSNGLL 95 (321)
Q Consensus 24 ~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~-~~~-----~~~~~~p~l~~~-~~G~l~ 95 (321)
.-..|.|.|+.. +|+++++.... .....-..|.+.+|+|. +|+....+. ... ....+.|.+... .+|+-+
T Consensus 55 ~i~a~DP~Ii~~-~g~YY~~~T~~-~~~~~~~gi~v~~S~DLv~W~~~g~~l~~~~~~~~~~~~~WAP~v~~~~~~Gkyy 132 (526)
T 3vsf_A 55 VIHAHGGGMLKH-GDYYYWYGEYR-DDSNLFLGVSCYRSKDLVNWEYRGEVLSRNSAPELNHCNIERPKVMYNASTGEFV 132 (526)
T ss_dssp BCCCEEEEEEEE-TTEEEEEEEEE-CTTSSEEEEEEEEESSSSSCEEEEEEEETTSSGGGSSCEEEEEEEEECTTTCCEE
T ss_pred EEeccCCeEEEE-CCEEEEEEecC-CCCCCcCcEEEEECCCCCCcCCCCccCCCCCCcCcccCceECCEEEEECCCCEEE
Confidence 356799999984 57888654321 11111134777888997 999876542 211 123678988776 489999
Q ss_pred EEEEecc--ccCCceeEEEEecCCCCCCCCCccCCC----CC-------CCCCCCccEEccCCeEEEeeecccCCCCcEE
Q 020796 96 LFYKIGQ--EVQKWSGCMKRSYNKGVTWSEREQLPP----GI-------LGPSKNKPILLENGLLLCGSSVESWNSWGSW 162 (321)
Q Consensus 96 l~~~~~~--~~~~~~~~~~~S~D~G~TWs~~~~l~~----~~-------~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 162 (321)
|+|.... ..+...+.+..|++---.|+....+.+ +. ...+-..++...||+.++....+ ....+.
T Consensus 133 my~~~~~~~~~~~~~igvats~~p~Gpw~~~g~~~p~~~~g~~~~~~~~~~~iDp~vf~D~dG~~Yl~~~~~--~~~~i~ 210 (526)
T 3vsf_A 133 MWMHWENGINYGQARAAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDTDGKGYFISAAN--ENMDLH 210 (526)
T ss_dssp EEEEEECSSCSCCCEEEEEEESSSSSCCEEEEEECSSCTTCCEETTEESCCCCSEEEEECTTSCEEEEEEET--TTTEEE
T ss_pred EEEEeeCCCCCCcceEEEEEcCCCCCCCEeccccccccccccccCCCCCcccccccEEECCCCCEEEEEEec--CCCceE
Confidence 9988531 112234567788775556774322111 10 01111222344578877654322 122456
Q ss_pred EEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCC--CCcEEEEEeccCCcCCCCCc
Q 020796 163 MEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNG--IGRVCMSESCDGGLTWSYAK 230 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~--~~~~~~~~S~D~G~tWs~~~ 230 (321)
+..-++++.++.........+. ..-.|.++. .+|.+++++....+ ...+.+++|++---.|+...
T Consensus 211 i~~l~~d~~~~~~~~~~~~~g~--~~EgP~i~k-~~G~YYL~~S~~tg~~~~~~~~a~S~s~~GPw~~~~ 277 (526)
T 3vsf_A 211 LYELTPDYKNIASLKAKLFVGQ--QREAPCLIK-RNGYYYLITSGCTGWNPNQAKYAYSKDLASGWSQLY 277 (526)
T ss_dssp EEEECTTSSSEEEEEEEESTTS--CCEEEEEEE-SSSCEEEEEECCCTTSCCCEEECEESCSSSCCCCCE
T ss_pred EEEcCCCcccccCceEEeCCCC--CcCCeEEEE-ECCEEEEEEcCCCCcCCCceEEEEeCCCCCCceeCC
Confidence 6665655555544321222321 122356665 57899998853221 23677788877655688754
|
| >2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.013 Score=55.33 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=83.0
Q ss_pred ccccce-EEEecCCcEEEEEecCCCC-CCCCcEEEEEEeCCC-CcCCc-EEccCCCC---CCCCCeEEEEeCCCcEEEEE
Q 020796 26 SCHAST-IVEVDKGHFLVAYFGGSCE-GAPDVKIWLQTFKDG-RWQSP-IIADEEPN---VPMWNPVLFKLPSNGLLLFY 98 (321)
Q Consensus 26 ~~~~p~-l~~~~~g~l~~~~~~~~~~-g~~~~~i~~s~s~~G-tWs~~-~~~~~~~~---~~~~~p~l~~~~~G~l~l~~ 98 (321)
....|- ++. -+|.+++.|.-.... ..+.+...-++|+|. +|... ..+.++.. ..++.+..+..++|+++++|
T Consensus 20 w~NDPnG~~~-~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~D~~G~~SGsav~~~dg~~~l~Y 98 (541)
T 2ac1_A 20 WMNDPNGPMI-YKGIYHLFYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFDINGCWSGSATILPNGKPVILY 98 (541)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEECTTCSSSCSCEEEEEEESSSSSBEEEEEEECCCSGGGTTCEEEEEEEECTTSCEEEEE
T ss_pred CeeCCCccEE-ECCEEEEEEeeCCCCCCCCCcEEEEEECCCccceEECceeecCCCccccCCEEcceEEEeeCCEEEEEE
Confidence 334455 444 468888876443321 123566778899998 99864 34444321 23455666666799999999
Q ss_pred EeccccCCceeEEEEecCCC----CCCCCCc--c-CCCC----C-CCCCCCcc-EEc-cCCeEEEeeecccCCCC-cEEE
Q 020796 99 KIGQEVQKWSGCMKRSYNKG----VTWSERE--Q-LPPG----I-LGPSKNKP-ILL-ENGLLLCGSSVESWNSW-GSWM 163 (321)
Q Consensus 99 ~~~~~~~~~~~~~~~S~D~G----~TWs~~~--~-l~~~----~-~g~~~~~~-~~~-~~G~~~~~~~~~~~~~~-~~~~ 163 (321)
+..........++++|+|+| .+|++.. + +.+. . ....+.+- +-. .+|.+++...... ... .+.+
T Consensus 99 Tg~~~~~~~~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~~~~~~~~~fRDP~vvw~~~~g~w~m~~ga~~-~~~G~i~l 177 (541)
T 2ac1_A 99 TGIDPKNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKI-HRRGLAIT 177 (541)
T ss_dssp EEECTTSCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTTCCCTTSEECCCCCEECTTSCEEEEEEEEE-TTEEEEEE
T ss_pred EEeCCCCcEEEEEEEECCCCCCCceeEEecCCCcEEcCCCCCCCCCCceECCeEEeEeCCCeEEEEEEEec-CCceEEEE
Confidence 85222223345789999975 8997642 2 2221 1 11123222 222 3788765432111 112 2455
Q ss_pred EEECCCCceeEEee
Q 020796 164 EVTVDAGRSWRKYG 177 (321)
Q Consensus 164 ~~S~D~G~tW~~~~ 177 (321)
++|+ ++.+|+...
T Consensus 178 y~S~-Dl~~W~~~~ 190 (541)
T 2ac1_A 178 YTSK-DFLKWEKSP 190 (541)
T ss_dssp EEES-SSSSCEECS
T ss_pred EECC-CCCCcEEcc
Confidence 6665 579999864
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.072 Score=50.17 Aligned_cols=177 Identities=12% Similarity=0.132 Sum_probs=103.6
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CCC-CCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EGA-PDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g~-~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.....|.|... +|++++.|..... .+. .+..+.+.++++ |.|+.|..+.. ...+|.++.+.+|+.||+|..
T Consensus 70 ~~~WAP~i~~~-~g~~yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~~----~~iDp~~f~D~dG~~Yl~~~~ 144 (533)
T 1yif_A 70 GGVWAPCLSYS-DGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKLNS----SGFDASLFHDTDGKKYLLNML 144 (533)
T ss_dssp CBBCSCEEEEE-TTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCC----SCSCCEEEECTTSCEEEEEEE
T ss_pred CCEECceEEEE-CCEEEEEEEeccCCCCCcccccEEEEEeCCCCCCccccEEcCC----CcCCCceEECCCCCEEEEEEe
Confidence 45678999874 6898887754222 121 234577777776 68999876532 346899998889999999863
Q ss_pred ccc-cC--Cc-eeEEEE-ecCCCCCCCCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCcee
Q 020796 101 GQE-VQ--KW-SGCMKR-SYNKGVTWSEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 101 ~~~-~~--~~-~~~~~~-S~D~G~TWs~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW 173 (321)
... .+ .. ...+.. +.|..+..+++..+..+. ....+++.+...+|..++...... ...+.+.+++|++=---|
T Consensus 145 ~~~~~g~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~gg~~~~~~v~~~rs~s~~GP~ 224 (533)
T 1yif_A 145 WDHRIDRHSFGGIVIQEYSDKEQKLIGKPKVIFEGTDRKLTEAPHLYHIGNYYYLLTAEGGTRYEHAATIARSANIEGPY 224 (533)
T ss_dssp ECCCTTSCSEEEEEEEEEETTTTEECSCCEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred cccccCCCCCCCEEEEEECCccCCCCCCcEEEEcCCCCCccccceEEEECCEEEEEEeCCCCCCCeEEEEEEECCCCcee
Confidence 111 11 11 234444 566555566665554321 122444445556888766533211 123467889997532358
Q ss_pred EEee--ceecCC-----CCcceeeeeEEEcCCCeEEEEEe
Q 020796 174 RKYG--PIYIPN-----ESLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~~--~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r 206 (321)
+... ++.... ...+.-+.+++..++|+.++++.
T Consensus 225 ~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~ 264 (533)
T 1yif_A 225 EVHPDNPILTSWHDPGNPLQKCGHASIVQTHTDEWYLAHL 264 (533)
T ss_dssp EECTTCCSEECTTCTTSSSEEEEEEEEEECTTSCEEEEEE
T ss_pred eeCCCCceEecCCCCCCceEcCCCCeEEECCCCCEEEEEE
Confidence 7642 332221 11233356788888998777663
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.13 Score=44.89 Aligned_cols=216 Identities=17% Similarity=0.126 Sum_probs=117.4
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCC--C----------CCCCCccEEccCCeE
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGI--L----------GPSKNKPILLENGLL 147 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~--~----------g~~~~~~~~~~~G~~ 147 (321)
...+|.++.. +|+.+++++. . ...+.+|+| ..+|+....+.+.. . +.+..+-+...+|++
T Consensus 23 ~~~DP~i~~~-~g~yYl~~t~---~---~i~i~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~~~~~~~~wAP~v~~~~g~y 94 (314)
T 3cu9_A 23 WAHDPVIAKE-GSRWYVFHTG---S---GIQIKTSED-GVHWENMGWVFPSLPDWYKQYVPEKDEDHLWAPDICFYNGIY 94 (314)
T ss_dssp BCSSCEEEEE-TTEEEEEESE---E---TSEEEEESS-SSEEEEEEESCSSCCTTHHHHCTTCCSCEEEEEEEEEETTEE
T ss_pred CcCCCEEEEE-CCEEEEEECC---C---CeeEEECcC-CCCccCCCcccCCcchhhhccCCCcccCceecCcEEEECCEE
Confidence 3567888765 7888876542 1 235778887 78998765432211 0 001111233358887
Q ss_pred EEeeecccC--CCCcEEEEEECC---CCc--eeEEeeceecC--CCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEE
Q 020796 148 LCGSSVESW--NSWGSWMEVTVD---AGR--SWRKYGPIYIP--NESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE 218 (321)
Q Consensus 148 ~~~~~~~~~--~~~~~~~~~S~D---~G~--tW~~~~~~~~~--~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~ 218 (321)
++....... ....+.+++|++ .|- +|+...++... ......+.|.++...||+.++++.... +.+++++
T Consensus 95 ylyyt~~~~~~~~~~igva~s~~~dP~gp~~~w~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Yl~~g~~~--~~i~~~~ 172 (314)
T 3cu9_A 95 YLYYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSFW--SGIQLIQ 172 (314)
T ss_dssp EEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBST--TCEEEEE
T ss_pred EEEEEeccCCCCCceEEEEEeCCCCCCCCCcCcccCCeEecCCCCCCCCccCCCeEEcCCCCEEEEEeccC--CcEEEEE
Confidence 654322211 123456788876 343 49987644221 122346788888878899999886532 3566666
Q ss_pred -eccCCcC---CCCCccCCC----CCCCCceeEEEcCCCcEEEEEeCC-------CCCeEEEEEEcCCCCCCCcc--eee
Q 020796 219 -SCDGGLT---WSYAKPTQL----LNPNSGIDGVKLKDGRLLLAYNTV-------SRGVLKVALSKDDGDSWHDA--LTL 281 (321)
Q Consensus 219 -S~D~G~t---Ws~~~~~~~----~~~~~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~S~D~G~tW~~~--~~l 281 (321)
+.|.++. |. +..+.. .....+..+.. .+|+.+|++... ....+.+++|++=---|... ..+
T Consensus 173 l~~d~~~~~~~~~-~~~~~~~~~~~~~~EgP~i~k-~~G~yyL~~s~~~~~~g~~~~y~~~~~~s~s~~GP~~~~~~~p~ 250 (314)
T 3cu9_A 173 LDTETMKPAAQAE-LLTIASRGEEPNAIEAPFIVC-RNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVDKNGVSM 250 (314)
T ss_dssp CCTTTCSCCTTCC-CEEEECCSSSSCCEEEEEEEE-ETTEEEEEEEESCCSSGGGCCCEEEEEEESSTTSCCBCTTSCBG
T ss_pred ECcccCcccCCCc-eEEecccCCCCCccCccEEEE-ECCEEEEEEEcCCcccCCCCcceEEEEEeCCCCCCCCcCCCCcc
Confidence 4443432 22 111110 01112234444 478999987532 34567888887533357653 122
Q ss_pred cc--------cCC--CceeceEEEEccCCeEEEEEEe
Q 020796 282 EE--------NLA--MEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 282 ~~--------~~~--~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
.. ... .+.++..+++. +|..+++|-.
T Consensus 251 ~~~~~~~~~~~~~~~~g~GH~~~~~~-~g~~~~~yh~ 286 (314)
T 3cu9_A 251 MQGGGTILDEGNDRWIGPGHCAVYFS-GVSAILVNHA 286 (314)
T ss_dssp GGTCCEEEECCCSSEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred ccCCCcEeecCCCcEEcCCCCEEEEc-CCCEEEEEEe
Confidence 11 111 12467788886 8888888754
|
| >1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.055 Score=50.81 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=87.2
Q ss_pred EccCCeEEEeeeccc----CCCCcEEEEEECCCCceeEEeeceec----CC--CCcceeeeeEEEcCCC----------e
Q 020796 141 LLENGLLLCGSSVES----WNSWGSWMEVTVDAGRSWRKYGPIYI----PN--ESLSVIQPVPFHTANR----------T 200 (321)
Q Consensus 141 ~~~~G~~~~~~~~~~----~~~~~~~~~~S~D~G~tW~~~~~~~~----~~--~~~~~~~~~~~~~~~G----------~ 200 (321)
...+|...+...... |.......++|+| +.+|+... +++ .+ ...++.-.+++..++| +
T Consensus 27 ~~~~G~yHlfyQ~~P~~~~wg~~~WgHa~S~D-lv~W~~~~-~al~~~g~P~~d~~g~~SGsav~~~~~~~g~~~~~~~~ 104 (518)
T 1y4w_A 27 LYHNGTYHLFFQYNPGGIEWGNISWGHAISED-LTHWEEKP-VALLARGFGSDVTEMYFSGSAVADVNNTSGFGKDGKTP 104 (518)
T ss_dssp EEETTEEEEEEEECTTCSSSCSCEEEEEEESS-SSSCEEEE-EEECCBTTTSCCCBEEEEEEEEECTTCTTSCCCSSSCC
T ss_pred eEECCEEEEEEeeCCCCCCCCCcEEEEEEeCC-CccEEECC-ceEecCCCCCCCCCceEeeeEEEcCCCccccccCCCcc
Confidence 335777654421111 2223345677775 89999875 334 22 2346666777776665 7
Q ss_pred EEEEEeecC--C------------CCcEEEEEeccCCcCCCCC---ccCCCCC-CC------Cc---eeEEEc-CCCcEE
Q 020796 201 LRVLMRSFN--G------------IGRVCMSESCDGGLTWSYA---KPTQLLN-PN------SG---IDGVKL-KDGRLL 252 (321)
Q Consensus 201 l~~~~r~~~--~------------~~~~~~~~S~D~G~tWs~~---~~~~~~~-~~------~~---~~~~~~-~~g~~~ 252 (321)
+++++.... . ...+.+++|.|+|.+|++. .++ +.. +. .. +.+.+. .+|+.+
T Consensus 105 ~~l~YTg~~~~~~~~~~~~~~~~~~q~q~lA~s~D~g~~w~k~~~~~pv-i~~~~~~y~~~~~~fRDP~V~~~~~~g~w~ 183 (518)
T 1y4w_A 105 LVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPV-IPNPPSPYEAEYQNFRDPFVFWHDESQKWV 183 (518)
T ss_dssp EEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCS-BCSCCTTCGGGTTSEEEEEEEEETTTTEEE
T ss_pred EEEEEeeeeccccccccccccccceeEEEEEEEcCCCceEEEcCCCCCe-EecCCcccccCCCCcCCCcEeEECCCCcEE
Confidence 888875431 0 1357889999999999985 222 211 11 11 234443 368999
Q ss_pred EEEeCCCCCeEEEEEEcCCCCCCCcceeecc-cC-CCceeceEEEEc
Q 020796 253 LAYNTVSRGVLKVALSKDDGDSWHDALTLEE-NL-AMEFSYPAVIQA 297 (321)
Q Consensus 253 lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~-~~-~~~~~yp~~~~~ 297 (321)
|++.-..+..+.++.|. |.++|+....+.. .. ....-=|.+..+
T Consensus 184 mv~~~g~~~~i~ly~S~-DL~~W~~~~~~~~~~~~~~mwECPdlf~l 229 (518)
T 1y4w_A 184 VVTSIAELHKLAIYTSD-NLKDWKLVSEFGPYNAQGGVWECPGLVKL 229 (518)
T ss_dssp EEEEEGGGTEEEEEEES-SSSSCEEEEEECCCSCCSSEEEEEEEEEE
T ss_pred EEEEecCCCeEEEEECC-CCCCCeECccccccCCCCCeEECCeEEEe
Confidence 98321112357778786 4789987665432 11 122333788776
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.073 Score=50.19 Aligned_cols=177 Identities=14% Similarity=0.162 Sum_probs=102.3
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CCC-CCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EGA-PDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g~-~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
....+|.|... +|++++.|..... .|. .+..+.+.++++ |.|+.|..+.. ...+|.++.+.+|+.||+|..
T Consensus 70 ~~~WAP~i~~~-~g~~yly~t~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~~----~~iDp~~f~DddG~~Yl~~~~ 144 (538)
T 3c2u_A 70 GGIWAPDLSYA-DGKFWLIYTDVKVVDGMWKDCHNYLTTAEDIKGPWSKPILLNG----AGFDASLFHDPSGKKYLVNMY 144 (538)
T ss_dssp CEECSCEEEEE-TTEEEEEEEEECCCSSSCCCEEEEEEEESSTTCCCCCCEEEEC----SCSCCEEEECTTSCEEEEEEE
T ss_pred CCEECCeEEEE-CCEEEEEEEeccCCCCCcccccEEEEEECCCCCCccccEecCC----CcCCCeeEECCCCCEEEEEEe
Confidence 44678999875 6899887754322 121 234577777775 68999876632 246899999889999999873
Q ss_pred cccc-C--Cc-eeEEEE-ecCCCCCCCCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCcee
Q 020796 101 GQEV-Q--KW-SGCMKR-SYNKGVTWSEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 101 ~~~~-~--~~-~~~~~~-S~D~G~TWs~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW 173 (321)
.... + .+ .+.+.. +.|.++..+++..+..+. ....+++.+...+|..++...... ...+.+.+++|++=---|
T Consensus 145 ~~~~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~gg~~~~~~~~~~rS~s~~GP~ 224 (538)
T 3c2u_A 145 WDQRVYHHNFYGIALQEYSVAEEKLIGKPEIIYKGTDIAYTEGPHLYYINDMYYLMTAEGGTTYQHSETIARSKTIHGPY 224 (538)
T ss_dssp ECCCTTSCSEEEEEEEEEETTTTEECSCCEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred cCCccCCCCCCCEEEEEECCccCCCCCCCEEEecCCCCCccccceEEEECCEEEEEEecCCCCCCeEEEEEEECCCCCCC
Confidence 1111 1 11 234444 445444445555443321 112444445556888766533211 123467889998643357
Q ss_pred EEee--ceecCC-----CCcceeeeeEEEcCCCeEEEEEe
Q 020796 174 RKYG--PIYIPN-----ESLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~~--~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r 206 (321)
+... ++.... ...+.-+.++++.++|+.++++.
T Consensus 225 ~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~ 264 (538)
T 3c2u_A 225 EIQPDYPLLSAWKEVHNPLQKCGHASLVETQNGQWYLAHL 264 (538)
T ss_dssp EECTTCCSBCCTTCTTCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred ccCCCCceEecCCCCCCceEcCCCCeEEECCCCCEEEEEE
Confidence 6542 332221 11233356788888899777764
|
| >1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.012 Score=55.62 Aligned_cols=149 Identities=12% Similarity=0.135 Sum_probs=82.2
Q ss_pred ccccce-EEEecCCcEEEEEecCCCC-CCCC-cEEEEEEeCCC-CcCCcE-EccCCCC---CCCCCeEEEEeCCCcEEEE
Q 020796 26 SCHAST-IVEVDKGHFLVAYFGGSCE-GAPD-VKIWLQTFKDG-RWQSPI-IADEEPN---VPMWNPVLFKLPSNGLLLF 97 (321)
Q Consensus 26 ~~~~p~-l~~~~~g~l~~~~~~~~~~-g~~~-~~i~~s~s~~G-tWs~~~-~~~~~~~---~~~~~p~l~~~~~G~l~l~ 97 (321)
....|- ++. -+|.+++.|.-.... ..+. +...-++|+|. +|.... .+.++.. ..++.+..+..++|+++++
T Consensus 19 w~NDPnG~~~-~~G~yHlFYQ~~P~~~~~g~~~~WgHa~S~Dlv~W~~~~~aL~P~~~~D~~Gv~SGsav~~~dg~~~l~ 97 (543)
T 1st8_A 19 WMNDPNGPML-YQGVYHFFYQYNPYAATFGDVIIWGHAVSYDLVNWIHLDPAIYPTQEADSKSCWSGSATILPGNIPAML 97 (543)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEEESSCSSCCSCCEEEEEEESSSSSEEECCCSBCCCSGGGTTEEEEEEEEEETTTEEEEE
T ss_pred CeECCcccEE-ECCEEEEEEeeCCCCCCCCCccEEEEEECCCccceEECCeeccCCCccccCCEEcceEEEeeCCEEEEE
Confidence 334455 444 468888876433221 1233 66778899998 997643 3443221 2344566556679999999
Q ss_pred EEeccccCCceeEEEEecCCC----CCCCCCc--c-CCC--CC-CCCCCCcc-EEc-cCCeEEEeeecccCCCC-cEEEE
Q 020796 98 YKIGQEVQKWSGCMKRSYNKG----VTWSERE--Q-LPP--GI-LGPSKNKP-ILL-ENGLLLCGSSVESWNSW-GSWME 164 (321)
Q Consensus 98 ~~~~~~~~~~~~~~~~S~D~G----~TWs~~~--~-l~~--~~-~g~~~~~~-~~~-~~G~~~~~~~~~~~~~~-~~~~~ 164 (321)
|+..........++++|+|+| .+|.+.. + +.+ +. ....+.+- +-. .+|.+++...... ... .+.++
T Consensus 98 YTg~~~~~~q~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~g~~~~~fRDP~vvw~~~~g~w~mv~ga~~-~~~G~i~ly 176 (543)
T 1st8_A 98 YTGSDSKSRQVQDLAWPKNLSDPFLREWVKHPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIVVGGDR-DNNGMAFLY 176 (543)
T ss_dssp EEEECTTSCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTCCTTSEECCCCCEECTTSCEEEEEEEEE-TTEEEEEEE
T ss_pred EEEeCCCCcEEEEEEEECCCCCCCcceeEEcCCCcEEeCCCCCCcCccCCCeEEEECCCCcEEEEEEEec-CCceEEEEE
Confidence 985222223345788999975 8997632 2 222 11 01123222 222 4788765432111 111 24556
Q ss_pred EECCCCceeEEee
Q 020796 165 VTVDAGRSWRKYG 177 (321)
Q Consensus 165 ~S~D~G~tW~~~~ 177 (321)
+|+ ++.+|+...
T Consensus 177 ~S~-Dl~~W~~~~ 188 (543)
T 1st8_A 177 QST-DFVNWKRYD 188 (543)
T ss_dssp EES-SSSSCEECS
T ss_pred ECC-CCCCcEECc
Confidence 665 579999864
|
| >3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.074 Score=49.62 Aligned_cols=219 Identities=12% Similarity=0.147 Sum_probs=113.3
Q ss_pred CCeE-EEEeC-CCcEEEEEEeccccCCce--e--EEEEecCCCCCCCCCcc-CCCC--CCCCCCCccEEcc---------
Q 020796 82 WNPV-LFKLP-SNGLLLFYKIGQEVQKWS--G--CMKRSYNKGVTWSEREQ-LPPG--ILGPSKNKPILLE--------- 143 (321)
Q Consensus 82 ~~p~-l~~~~-~G~l~l~~~~~~~~~~~~--~--~~~~S~D~G~TWs~~~~-l~~~--~~g~~~~~~~~~~--------- 143 (321)
.+|. ++..+ +|+-+|||+..+....|. . ..+.|+| ..+|+.... |.++ ..|+..+.+++..
T Consensus 23 NDPNG~~y~~~~G~YHlFYQ~nP~~~~wg~~~~WGHa~S~D-LvhW~~~~~aL~P~~d~~G~~SGSav~d~~~t~g~~~~ 101 (509)
T 3kf3_A 23 NDPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSND-LVHWDEHEIAIGPEHDNEGIFSGSIVVDHNNTSGFFNS 101 (509)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTCSSCCSSBEEEEEEESS-SSSCEECSCCBCCSSTTCEEEEEEEEECTTCTTSCCCT
T ss_pred eCCcceEEeCCCCEEEEEEecCCCCCCCCCcCEEEEEEccC-CCCcEECcccccccccCCCEEeceEEEeCCcccccccc
Confidence 3454 44443 799999998643332232 1 3567776 599986433 4342 2233334444432
Q ss_pred ----CCeEEEeeecc-cCCCCcEEEEEECCCCceeEEee--ceecCCCCcceeeeeEEEc-CCCeEEEEEeecCCCCcEE
Q 020796 144 ----NGLLLCGSSVE-SWNSWGSWMEVTVDAGRSWRKYG--PIYIPNESLSVIQPVPFHT-ANRTLRVLMRSFNGIGRVC 215 (321)
Q Consensus 144 ----~G~~~~~~~~~-~~~~~~~~~~~S~D~G~tW~~~~--~~~~~~~~~~~~~~~~~~~-~~G~l~~~~r~~~~~~~~~ 215 (321)
+|++++. |.. ........+++|.|+|.+|++.. |+. .........|.++.. .+|+.+|+..... .+.+.
T Consensus 102 ~~~p~~~l~~~-YTg~~~~~q~q~lA~S~D~g~~~~k~~~nPVi-~~~~~~fRDPkVfw~~~~g~w~Mv~g~~~-~g~i~ 178 (509)
T 3kf3_A 102 SIDPNQRIVAI-YTNNIPDNQTQDIAFSLDGGYTFTKYENNPVI-DVSSNQFRDPKVFWHEDSNQWIMVVSKSQ-EYKIQ 178 (509)
T ss_dssp TSCGGGCEEEE-EEEEETTEEEEEEEEESSSSSSCEECTTCCSB-CCSCSSCEEEEEEEETTTTEEEEEEEEGG-GTEEE
T ss_pred ccCCCCceEEE-ECCCCCCCeeEEEEEECCCCcceEEcCCCceE-cCCCCcccCCeEEEECCCCEEEEEEEECC-CCEEE
Confidence 3455432 321 11122456789999999999853 332 222234566888654 4678777764332 35677
Q ss_pred EEEeccCCcCCCCCccCCCCCCC---CceeEEEcC-----CCcEEEEEe-----CCCCCeEEEEE-EcCCCCCCCcc---
Q 020796 216 MSESCDGGLTWSYAKPTQLLNPN---SGIDGVKLK-----DGRLLLAYN-----TVSRGVLKVAL-SKDDGDSWHDA--- 278 (321)
Q Consensus 216 ~~~S~D~G~tWs~~~~~~~~~~~---~~~~~~~~~-----~g~~~lv~~-----~~~r~~l~~~~-S~D~G~tW~~~--- 278 (321)
+.+|.| .++|+....+...... ..+.+.+++ +++.+|++. +.......+.+ ..| |.+|.+.
T Consensus 179 ly~S~D-L~~W~~~~~~~~~~~G~mwECPdlf~l~~~~~~~~k~vL~~s~~~~~p~g~~~~~Y~vG~~d-~~~f~~~~~~ 256 (509)
T 3kf3_A 179 IFGSAN-LKNWVLNSNFSSGYYGNQYECPGLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFD-GFQFVPDDSQ 256 (509)
T ss_dssp EEEESS-SSSCEEEEEECCBCCCSCEEEEEEEEEEBTTSSCEEEEEEEEECSCCTTSSCEEEEEEEEEC-SSCEEESSCB
T ss_pred EEECCC-CCCceEccccccCCccceeECCeEEEECccCCCCceEEEEEccCCCCCCCCCceEEEEEEEe-CCEEEecCcc
Confidence 778877 7999864432211111 112344443 356666653 12222222333 344 6677532
Q ss_pred -eeecccCCCceeceEEEEc-cCC-eEEEEEEeC
Q 020796 279 -LTLEENLAMEFSYPAVIQA-SDG-SVHITYTYN 309 (321)
Q Consensus 279 -~~l~~~~~~~~~yp~~~~~-~dg-~l~v~y~~~ 309 (321)
..++.+ .+ -|..-+.. ++| +|.+.|-.+
T Consensus 257 ~~~lD~G--~D-fYA~qtf~~~~grri~igWm~~ 287 (509)
T 3kf3_A 257 TRFVDIG--KD-FYAFQTFSEVEHGVLGLAWASN 287 (509)
T ss_dssp CEESCCS--SS-CEEEEECBSCSSSEEEEEECSC
T ss_pred ceeeccC--Cc-ceeeceeeCCCCCEEEEEecCC
Confidence 233322 22 35554443 344 677888654
|
| >3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.11 Score=45.25 Aligned_cols=190 Identities=13% Similarity=0.135 Sum_probs=102.0
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-CC-----------CCCCCCeEEEEeCC
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-EP-----------NVPMWNPVLFKLPS 91 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~~-----------~~~~~~p~l~~~~~ 91 (321)
...+.|.++.. +|+.+++. .. + .+.+.+|+|. +|+....+.. .+ ....+.|.+... +
T Consensus 22 ~~~~DP~i~~~-~g~yYl~~-t~-----~--~i~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~~~~~~~wAP~v~~~-~ 91 (314)
T 3cu9_A 22 LWAHDPVIAKE-GSRWYVFH-TG-----S--GIQIKTSEDGVHWENMGWVFPSLPDWYKQYVPEKDEDHLWAPDICFY-N 91 (314)
T ss_dssp CBCSSCEEEEE-TTEEEEEE-SE-----E--TSEEEEESSSSEEEEEEESCSSCCTTHHHHCTTCCSCEEEEEEEEEE-T
T ss_pred cCcCCCEEEEE-CCEEEEEE-CC-----C--CeeEEECcCCCCccCCCcccCCcchhhhccCCCcccCceecCcEEEE-C
Confidence 44678999877 57887643 22 1 2567788887 9998665432 11 134667888765 8
Q ss_pred CcEEEEEEecccc-CCceeEEEEecC---CCC--CCCCCccCCC--C--CCCCCCCccEEccCCeEEEeeecccCCCCcE
Q 020796 92 NGLLLFYKIGQEV-QKWSGCMKRSYN---KGV--TWSEREQLPP--G--ILGPSKNKPILLENGLLLCGSSVESWNSWGS 161 (321)
Q Consensus 92 G~l~l~~~~~~~~-~~~~~~~~~S~D---~G~--TWs~~~~l~~--~--~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 161 (321)
|+.+|+|+..... ......+..|++ .|. +|+.+..+.. . ....+-..++...||+.++..... + ..+
T Consensus 92 g~yylyyt~~~~~~~~~~igva~s~~~dP~gp~~~w~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Yl~~g~~-~--~~i 168 (314)
T 3cu9_A 92 GIYYLYYSVSTFGKNTSVIGLATNQTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSF-W--SGI 168 (314)
T ss_dssp TEEEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBS-T--TCE
T ss_pred CEEEEEEEeccCCCCCceEEEEEeCCCCCCCCCcCcccCCeEecCCCCCCCCccCCCeEEcCCCCEEEEEecc-C--CcE
Confidence 9999999863211 122345677776 343 4987654321 1 111122223344678877653221 1 235
Q ss_pred EEEEEC-CCCce---eEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeec------CCCCcEEEEEeccCCcCCCCC
Q 020796 162 WMEVTV-DAGRS---WRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSF------NGIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 162 ~~~~S~-D~G~t---W~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~------~~~~~~~~~~S~D~G~tWs~~ 229 (321)
.+...+ |.++. |... .+...+......| |.++.. +|..++++... .....+.+++|++----|+..
T Consensus 169 ~~~~l~~d~~~~~~~~~~~-~~~~~~~~~~~~EgP~i~k~-~G~yyL~~s~~~~~~g~~~~y~~~~~~s~s~~GP~~~~ 245 (314)
T 3cu9_A 169 QLIQLDTETMKPAAQAELL-TIASRGEEPNAIEAPFIVCR-NGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVDK 245 (314)
T ss_dssp EEEECCTTTCSCCTTCCCE-EEECCSSSSCCEEEEEEEEE-TTEEEEEEEESCCSSGGGCCCEEEEEEESSTTSCCBCT
T ss_pred EEEEECcccCcccCCCceE-EecccCCCCCccCccEEEEE-CCEEEEEEEcCCcccCCCCcceEEEEEeCCCCCCCCcC
Confidence 555543 43431 2211 1211111112344 566654 78988887543 122367778887654457653
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.095 Score=49.38 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=101.4
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CCC-CCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EGA-PDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g~-~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
....+|.|... +|++++.|..... .|. .+..+.+.++++ |.|+.|..+.. ...+|.++.+.+|+.||+|..
T Consensus 71 ~~~WAP~i~~~-~g~~ylyyt~~~~~~g~~~~~~~~va~s~~~~Gpw~~p~~~~~----~~iDp~vf~DddG~~Yl~~~~ 145 (535)
T 2exh_A 71 GGVWAPHLSYS-DGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNS----SGFDPSLFHDEDGRKYLVNMY 145 (535)
T ss_dssp CBBCSCEEEEE-TTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCC----SCSCCEEEECTTSCEEEEEEE
T ss_pred CCEECCeEEEE-CCEEEEEEEeccCCCCCccccceEEEEeCCCCCCccccEecCC----CcCCCceEECCCCCEEEEEEe
Confidence 45678999874 6899987754322 121 235577777775 69999876532 346899999889999998863
Q ss_pred ccc-cC--Cce-eEEEE-ecCCCCCCCCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCcee
Q 020796 101 GQE-VQ--KWS-GCMKR-SYNKGVTWSEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 101 ~~~-~~--~~~-~~~~~-S~D~G~TWs~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW 173 (321)
... .+ .+. ..+.. +.|..+..+++..+..+. ....+++.+...+|..++...... .....+.+++|++=---|
T Consensus 146 ~~~~~~~~~~~~i~~~~l~~d~~~~~g~~~~i~~~~~~~~~EgP~i~k~~G~YYL~~s~ggt~~~~~~~~~rs~s~~GP~ 225 (535)
T 2exh_A 146 WDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPY 225 (535)
T ss_dssp ECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred cCCccCCCCCCcEEEEEECCccCCCCCCcEEEEcCCCCCccccceEEEECCEEEEEEeCCCCCCCeEEEEEEeCCCCCCC
Confidence 111 11 112 34444 555544455544443321 122444445556888766533211 123467888998632246
Q ss_pred EEee--ceecCC-----CCcceeeeeEEEcCCCeEEEEEe
Q 020796 174 RKYG--PIYIPN-----ESLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~~--~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r 206 (321)
+... ++.... ...+.-+.+++..++|+.++++.
T Consensus 226 ~~~~~~pil~~~~~~~~~~~~~GH~~~v~~~~G~w~~~~~ 265 (535)
T 2exh_A 226 EVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHL 265 (535)
T ss_dssp EECTTCCSEESTTCTTCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred ccCCCcceEecCCCCCCceEcCCCCeEEECCCCCEEEEEE
Confidence 5532 332211 11233356788888898777764
|
| >3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.042 Score=51.40 Aligned_cols=191 Identities=15% Similarity=0.213 Sum_probs=99.7
Q ss_pred EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCCCCCCCCeEEEEeCCC----------cEEEEE
Q 020796 32 IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEPNVPMWNPVLFKLPSN----------GLLLFY 98 (321)
Q Consensus 32 l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~~~~~~~p~l~~~~~G----------~l~l~~ 98 (321)
++.. +|..+++|.-... ...+.+.-.-++|+|- +|+. |..+.+..+..+...+.+.++++ .++++|
T Consensus 47 ~~y~-~G~YHlFYQ~~P~~~~wg~~~WgHa~S~DLvhW~~~~~aL~d~~g~~~~SGSav~~~~~~~g~~~~~~~~l~l~Y 125 (516)
T 3sc7_X 47 LIKI-GSTWHLFFQHNPTANVWGNICWGHATSTDLMHWAHKPTAIADENGVEAFTGTAYYDPNNTSGLGDSANPPYLAWF 125 (516)
T ss_dssp EEEE-TTEEEEEEEEETTCSTTCCCEEEEEEESSSSSCEEEEEEECCBTTEEEEEEEEEECTTCTTSSSCSSSCCEEEEE
T ss_pred eEEE-CCEEEEEEeCCCCCCccCCCEEEEEEeCCCCcceecCccccCCCCceeEeceEEEeCCcccccccCCCCeEEEEE
Confidence 4444 5888887633221 1122455556889998 9997 44453322222355555556553 599999
Q ss_pred Eeccc-cCCceeEEEEecCCCCCCCCCc--cC-CC------CCCCC--CCCccEEc--cCCeEEEeeecccCCCCcEEEE
Q 020796 99 KIGQE-VQKWSGCMKRSYNKGVTWSERE--QL-PP------GILGP--SKNKPILL--ENGLLLCGSSVESWNSWGSWME 164 (321)
Q Consensus 99 ~~~~~-~~~~~~~~~~S~D~G~TWs~~~--~l-~~------~~~g~--~~~~~~~~--~~G~~~~~~~~~~~~~~~~~~~ 164 (321)
+.... .+....++++|+|+|.+|++.. ++ .+ +..+. .+.+-+.. .+|.|++..... ....+.++
T Consensus 126 Tg~~~~~~~q~q~lA~s~D~g~~w~k~~~nPVi~~~~~~~~~~~~~~~fRDPkV~~~~~~g~w~mv~g~~--~~~~i~ly 203 (516)
T 3sc7_X 126 TGYTTSSQTQDQRLAFSVDNGATWTKFQGNPIISTSQEAPHDITGGLESRDPKVFFHRQSGNWIMVLAHG--GQDKLSFW 203 (516)
T ss_dssp EEEETTTTEEEEEEEEESSTTSCCEECTTCCSBCHHHHTTTCTTSSSSCEEEEEEEETTTTEEEEEEECB--TTCEEEEE
T ss_pred eeeeCCCCceEEEEEEecCCCceEEEcCCCceEcCCCcccccccCCCcccCCeEEEECCCCeEEEEEEEC--CCCEEEEE
Confidence 85322 1223457899999999998742 22 11 11111 12222322 357776553211 12245566
Q ss_pred EECCCCceeEEeeceecCCCCcc------eee-eeEEEcC-----CCeEEEEEeecC-----CCCcEEEEEeccCCcCCC
Q 020796 165 VTVDAGRSWRKYGPIYIPNESLS------VIQ-PVPFHTA-----NRTLRVLMRSFN-----GIGRVCMSESCDGGLTWS 227 (321)
Q Consensus 165 ~S~D~G~tW~~~~~~~~~~~~~~------~~~-~~~~~~~-----~G~l~~~~r~~~-----~~~~~~~~~S~D~G~tWs 227 (321)
.|+ +.++|+...++...+. .| ..| |.++.++ +++.++++..+. +....|+.=..| |.+|+
T Consensus 204 ~S~-DL~~W~~~~~l~~~~~-~g~~~~~~mwECPdlf~l~~~g~~~~k~VL~~s~~~~~~~~~~~~~Y~vG~~d-~~~f~ 280 (516)
T 3sc7_X 204 TSA-DTINWTWQSDLKSTSI-NGLSSDITGWEVPDMFELPVEGTEETTWVVMMTPAEGSPAGGNGVLAITGSFD-GKSFT 280 (516)
T ss_dssp EES-SSSSCEEEEEEEGGGS-TTCCTTCCCBCCCEEEEEECSSSSCEEEEEEECCSSCCTTSSSCCEEEEEEEC-SSCEE
T ss_pred ECC-CCCCceEcccccccCC-CCcccccceEECCcEEEecccCCCCceEEEEECCCCCCCCCCCceEEEEEEcc-CCeeE
Confidence 665 5799998776543211 11 233 6776663 235555554321 123445444455 55665
Q ss_pred C
Q 020796 228 Y 228 (321)
Q Consensus 228 ~ 228 (321)
.
T Consensus 281 ~ 281 (516)
T 3sc7_X 281 A 281 (516)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.39 Score=45.02 Aligned_cols=220 Identities=14% Similarity=0.117 Sum_probs=119.0
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEcc-CCC---------CCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIAD-EEP---------NVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~-~~~---------~~~~~~p~l~~~~~G~l 94 (321)
..+.|+|+... ++.+++. .. .+..+ .|.+.+|+|. +|+....+. ... ....+.|.+.. .+|+.
T Consensus 13 ~~~DP~i~~~~-~~yY~~~-s~-~~~~~--gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~~~~~wAP~i~~-~~g~~ 86 (528)
T 1yrz_A 13 FHPDPSIVRVG-DDYYIAT-ST-FEWFP--GVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCLSY-HDGTF 86 (528)
T ss_dssp SCCSCEEEEET-TEEEEEE-CC-BTEES--BCEEEEESSSSSCEEEECSBCSTTTCCCTTCCTTCEECSCEEEE-ETTEE
T ss_pred CCCCCeEEEEC-CEEEEEE-cc-CccCC--CeEEEECCCccCceECccccCCcccccccCCCCCCCEECCeEEE-ECCEE
Confidence 45679998775 6777753 21 11112 2567788887 999755332 111 13467898876 48999
Q ss_pred EEEEEeccc-cCCc---eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEee--ecccC-C--CCcEEEEE
Q 020796 95 LLFYKIGQE-VQKW---SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGS--SVESW-N--SWGSWMEV 165 (321)
Q Consensus 95 ~l~~~~~~~-~~~~---~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~--~~~~~-~--~~~~~~~~ 165 (321)
+|+|+.... .+.+ ..+++.|+|-.-.|+.|..+... .+-+.++...||+.++.. +.... . ...+.+..
T Consensus 87 yl~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~~~---~iDp~vf~D~dG~~Yl~~~~~~~~~~~~~~~~i~~~~ 163 (528)
T 1yrz_A 87 YLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSS---GFDPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQE 163 (528)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEECCCS---CSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEE
T ss_pred EEEEecccCCCCCcccceEEEEEeCCCCCCccccEECCCC---cCCCceEECCCCCEEEEEeeccCCCCCCCCCeEEEEE
Confidence 999974221 1211 25677887754569987765211 122233444689887652 11110 1 11345555
Q ss_pred -ECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC-CCC-CC
Q 020796 166 -TVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT-QLL-NP 237 (321)
Q Consensus 166 -S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~-~~~-~~ 237 (321)
+.|.++.......+ ..+......| |.+.. .+|.+++++.... ....+.+++|++---.|+... ++ ... .+
T Consensus 164 l~~d~~~~~g~~~~i-~~~~~~~~~EgP~i~k-~~G~YYL~~s~~g~~~~~~~~~~rs~~~~GP~~~~~~~pil~~~~~~ 241 (528)
T 1yrz_A 164 YSEAEQKLVGPVKNI-YKGTDIQLTEGPHLYK-KDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQP 241 (528)
T ss_dssp EETTTTEEEEEEEEE-ECCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEECTTCT
T ss_pred ECCccCCCCCCCEEE-EcCCCCCccCCCEEEE-ECCEEEEEEeCCCCCCCcEEEEEEECCCCCCCCcCCCCeEEEecCCC
Confidence 55544433433323 2222222344 55665 4789988886532 123577888877544676532 11 001 11
Q ss_pred CC-----c-eeEEEcCCCcEEEEEe
Q 020796 238 NS-----G-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~-----~-~~~~~~~~g~~~lv~~ 256 (321)
.. + ..++..++|+.++++.
T Consensus 242 ~~~~~~~GH~~~v~~~~G~~~~~~~ 266 (528)
T 1yrz_A 242 ELALQKAGHGSLVETQNGEWYLAHL 266 (528)
T ss_dssp TCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred CCceEcCCcCeEEECCCCCEEEEEE
Confidence 11 1 2356677899999884
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.37 Score=41.96 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=116.5
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCC------------CCCCCCccEEccCCeE
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGI------------LGPSKNKPILLENGLL 147 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~------------~g~~~~~~~~~~~G~~ 147 (321)
...+|.++.. +|+.+|+++. . ...+.+|+| ..+|+....+.+.. .+...+ -+...+|++
T Consensus 6 ~~~DP~i~~~-~g~yyl~~t~---~---~i~~~~S~D-L~~W~~~g~~l~~~~~~~~~~~~~~~~~~wAP-~v~~~~g~~ 76 (318)
T 1gyh_A 6 DVHDPVMTRE-GDTWYLFSTG---P---GITIYSSKD-RVNWRYSDRAFATEPTWAKRVSPSFDGHLWAP-DIYQHKGLF 76 (318)
T ss_dssp CCSSCEEEEE-TTEEEEEESE---E---TCEEEEESS-SSEEEEEEESSSSCCTTHHHHCTTCCSEEEEE-EEEEETTEE
T ss_pred ecCCCEEEEE-CCEEEEEECC---C---CcEEEECCC-CCCccCCCcccCCCcccccccCCCcCcccccC-eEEEECCEE
Confidence 4567888765 7888877542 1 235778887 78998765432211 011111 233358887
Q ss_pred EEeeecccC--CCCcEEEEEECC---CCc--eeEEeeceecC---CCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEE
Q 020796 148 LCGSSVESW--NSWGSWMEVTVD---AGR--SWRKYGPIYIP---NESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMS 217 (321)
Q Consensus 148 ~~~~~~~~~--~~~~~~~~~S~D---~G~--tW~~~~~~~~~---~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~ 217 (321)
++....... ....+.+++|++ .|- .|+...++... ......+.|.++...||+.++++.... +.++++
T Consensus 77 ylyyt~~~~~~~~~~igva~s~~~dp~gp~~~w~~~~~v~~~~~~~~~~~~iDp~vf~D~dG~~Yl~~g~~~--~~i~~~ 154 (318)
T 1gyh_A 77 YLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSFW--GGLKLF 154 (318)
T ss_dssp EEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCEEEEECBST--TCEEEE
T ss_pred EEEEEeccCCCCcceEEEEEeCCCCCCCCCcceecCCcccccCCCCCCCCcccCCeEECCCCCEEEEeeccC--CCEEEE
Confidence 664322211 122456788876 343 39886544221 122346788888878899999885432 456666
Q ss_pred EeccC----Cc--CCCC----CccCCCC------CCCCceeEEEcCCCcEEEEEeCC-------CCCeEEEEEEcCCCCC
Q 020796 218 ESCDG----GL--TWSY----AKPTQLL------NPNSGIDGVKLKDGRLLLAYNTV-------SRGVLKVALSKDDGDS 274 (321)
Q Consensus 218 ~S~D~----G~--tWs~----~~~~~~~------~~~~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~S~D~G~t 274 (321)
+..+. |+ +|.. +....+. ....+..+.. .+|+.+|++... ....+.+++|++=---
T Consensus 155 ~l~~d~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~EgP~i~k-~~g~yYL~~s~~~~~~g~~~~y~~~~~rS~s~~GP 233 (318)
T 1gyh_A 155 KLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILR-KGDYYYLFASWGLCCRKGDSTYHLVVGRSKQVTGP 233 (318)
T ss_dssp EBCTTSSSBCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEE-ETTEEEEEEEESCCSCGGGCCCEEEEEEESSTTSC
T ss_pred EeCCccccccceeecceecccCcceeecccCCCCcceeccEEEE-ECCEEEEEEEeCCCcCCCCCcceEEEEEcCCCCCC
Confidence 64333 22 3321 0000010 0111234444 478999887531 3446788888643334
Q ss_pred CCcc--eeecc--------cCC--CceeceEEEEccCCeEEEEEEe
Q 020796 275 WHDA--LTLEE--------NLA--MEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 275 W~~~--~~l~~--------~~~--~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
|... ..+.. ... ...++..+++. +|..+++|-.
T Consensus 234 ~~~~~g~p~~~~~g~~~~~~~~~~~g~GH~~~~~~-~G~~~~~yh~ 278 (318)
T 1gyh_A 234 YLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTW-DGKDYLVLHA 278 (318)
T ss_dssp CBCTTSBBGGGTCCEEEECCCSSEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred CCcCCCCEeecCCCcEEecCCCcEEcCCCCEEEEc-CCCEEEEEec
Confidence 7653 22221 111 12567788886 8888888754
|
| >1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.38 Score=41.87 Aligned_cols=191 Identities=12% Similarity=0.164 Sum_probs=102.9
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-CC----------CCCCCCeEEEEeCCC
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-EP----------NVPMWNPVLFKLPSN 92 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~~----------~~~~~~p~l~~~~~G 92 (321)
...+.|.++.. +|+.+++. .. + .+.+.+|+|. +|+....+.. .+ ....+.|.+... +|
T Consensus 5 ~~~~DP~i~~~-~g~yyl~~-t~-----~--~i~~~~S~DL~~W~~~g~~l~~~~~~~~~~~~~~~~~~wAP~v~~~-~g 74 (318)
T 1gyh_A 5 VDVHDPVMTRE-GDTWYLFS-TG-----P--GITIYSSKDRVNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQH-KG 74 (318)
T ss_dssp CCCSSCEEEEE-TTEEEEEE-SE-----E--TCEEEEESSSSEEEEEEESSSSCCTTHHHHCTTCCSEEEEEEEEEE-TT
T ss_pred eecCCCEEEEE-CCEEEEEE-CC-----C--CcEEEECCCCCCccCCCcccCCCcccccccCCCcCcccccCeEEEE-CC
Confidence 45678999876 57877753 21 1 2567788887 9998665432 11 134677888765 89
Q ss_pred cEEEEEEecccc-CCceeEEEEecC---CCC--CCCCCccCC-C--C--CCCCCCCccEEccCCeEEEeeecccCCCCcE
Q 020796 93 GLLLFYKIGQEV-QKWSGCMKRSYN---KGV--TWSEREQLP-P--G--ILGPSKNKPILLENGLLLCGSSVESWNSWGS 161 (321)
Q Consensus 93 ~l~l~~~~~~~~-~~~~~~~~~S~D---~G~--TWs~~~~l~-~--~--~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 161 (321)
+.+|+|+..... ......++.|++ .|. .|+.+..+. . . ....+-+.++...||+.++..... . ..+
T Consensus 75 ~~ylyyt~~~~~~~~~~igva~s~~~dp~gp~~~w~~~~~v~~~~~~~~~~~~iDp~vf~D~dG~~Yl~~g~~--~-~~i 151 (318)
T 1gyh_A 75 LFYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSF--W-GGL 151 (318)
T ss_dssp EEEEEEEECCTTSCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTTCSSCCCCCEEEECTTSCEEEEECBS--T-TCE
T ss_pred EEEEEEEeccCCCCcceEEEEEeCCCCCCCCCcceecCCcccccCCCCCCCCcccCCeEECCCCCEEEEeecc--C-CCE
Confidence 999999853221 112345777776 344 398765432 1 1 111122223334578877653211 1 235
Q ss_pred EEEEECCC----C--ceeEEee----ceecC--CCCcceee-eeEEEcCCCeEEEEEeec------CCCCcEEEEEeccC
Q 020796 162 WMEVTVDA----G--RSWRKYG----PIYIP--NESLSVIQ-PVPFHTANRTLRVLMRSF------NGIGRVCMSESCDG 222 (321)
Q Consensus 162 ~~~~S~D~----G--~tW~~~~----~~~~~--~~~~~~~~-~~~~~~~~G~l~~~~r~~------~~~~~~~~~~S~D~ 222 (321)
.+...+++ | .+|.... ++.+. +......| |.++.. +|..++++... .....+.+++|++-
T Consensus 152 ~~~~l~~d~~~~g~~~~w~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~-~g~yYL~~s~~~~~~g~~~~y~~~~~rS~s~ 230 (318)
T 1gyh_A 152 KLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRK-GDYYYLFASWGLCCRKGDSTYHLVVGRSKQV 230 (318)
T ss_dssp EEEEBCTTSSSBCSSCCEEEEECCCCCTTSCTTSCCSCCEEEEEEEEE-TTEEEEEEEESCCSCGGGCCCEEEEEEESST
T ss_pred EEEEeCCccccccceeecceecccCcceeecccCCCCcceeccEEEEE-CCEEEEEEEeCCCcCCCCCcceEEEEEcCCC
Confidence 55554333 2 3675421 11111 11112344 566654 78988887542 12236777888765
Q ss_pred CcCCCCC
Q 020796 223 GLTWSYA 229 (321)
Q Consensus 223 G~tWs~~ 229 (321)
---|+..
T Consensus 231 ~GP~~~~ 237 (318)
T 1gyh_A 231 TGPYLDK 237 (318)
T ss_dssp TSCCBCT
T ss_pred CCCCCcC
Confidence 4457653
|
| >1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.08 Score=45.64 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=79.4
Q ss_pred eeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCC-----------CCceeE--EEcCCCcEEEEEe
Q 020796 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNP-----------NSGIDG--VKLKDGRLLLAYN 256 (321)
Q Consensus 190 ~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~-----------~~~~~~--~~~~~g~~~lv~~ 256 (321)
.|.++.. +|+.+++.........+.+..|+| ..+|+..... ++.. ...+.+ +...+|+.+|.|.
T Consensus 14 DP~i~~~-~g~yYl~~t~~~~~~~i~i~~S~D-Lv~W~~~g~~-l~~~~~w~~~~~~~~~~~~wAP~v~~~~G~yylyyt 90 (293)
T 1uv4_A 14 DPTMIKE-GSSWYALGTGLTEERGLRVLKSSD-AKNWTVQKSI-FTTPLSWWSNYVPNYGQNQWAPDIQYYNGKYWLYYS 90 (293)
T ss_dssp SCEEEEE-TTEEEEEEECCTTSSBEEEEEESS-SSSCEEEEEE-TSSCCGGGGGTSTTCCSBCEEEEEEEETTEEEEEEE
T ss_pred CCeEEEE-CCEEEEEEcCCCCCCceEEEECCC-CCCccCCCcc-CCCCCcccccccccCCCceecceEEEECCEEEEEEE
Confidence 4566654 789999876643345688888988 6899863211 1100 112211 2335899999885
Q ss_pred CC----CCCeEEEEEEcCCC-CCCCccee-ecccC--CCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCC
Q 020796 257 TV----SRGVLKVALSKDDG-DSWHDALT-LEENL--AMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 257 ~~----~r~~l~~~~S~D~G-~tW~~~~~-l~~~~--~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~ 320 (321)
.. .+..+.++.|.|-- -.|+.+.. +.... ....--|.+...+||+.|++|.....+|..+++++
T Consensus 91 ~~~~~~~~~~i~va~s~~p~~Gpw~~~~~~l~~~~~~~~~~iDp~vf~d~dG~~Yl~~g~~~~~i~~~~l~~ 162 (293)
T 1uv4_A 91 VSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSFWSGIKLTKLDK 162 (293)
T ss_dssp ECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBSTTCEEEEEECT
T ss_pred ecCCCCCcceEEEEECCCCCCCCCccCCccEecCCCCCCCCCCCCeEECCCCCEEEEEEecCCCEEEEEECc
Confidence 32 23356778886532 37987643 33211 12345788887778999999976556788888775
|
| >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.65 Score=43.57 Aligned_cols=219 Identities=14% Similarity=0.098 Sum_probs=117.6
Q ss_pred cccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEcc-CC---------CCCCCCCeEEEEeCCCcEE
Q 020796 27 CHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIAD-EE---------PNVPMWNPVLFKLPSNGLL 95 (321)
Q Consensus 27 ~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~-~~---------~~~~~~~p~l~~~~~G~l~ 95 (321)
.+.|+|+... ++.+++. ... +-.+ .|.+.+|+|. +|+....+. .. .....+.|.+... +|+.+
T Consensus 12 ~~DP~ii~~~-~~yY~~~-s~~-~~~~--gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~~~~~WAP~i~~~-~g~~y 85 (533)
T 1yif_A 12 NPDPSICRAG-EDYYIAV-STF-EWFP--GVQIHHSKDLVNWHLVAHPLQRVSQLDMKGNPNSGGVWAPCLSYS-DGKFW 85 (533)
T ss_dssp CCSCEEEEET-TEEEEEE-CCB-TEES--BCEEEEESSSSSEEEEECSBCSTTTCCCTTCCTTCBBCSCEEEEE-TTEEE
T ss_pred CCCCeEEEEC-CEEEEEE-ecC-CCCC--CeEEEEeCCCCCCeECCccccCcccccccCCCCCCCEECceEEEE-CCEEE
Confidence 4679998775 6777642 321 1112 2567788887 998755332 11 1235788998764 89999
Q ss_pred EEEEeccc-cC---CceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeec--ccC-C--CCcEEEEE-
Q 020796 96 LFYKIGQE-VQ---KWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSV--ESW-N--SWGSWMEV- 165 (321)
Q Consensus 96 l~~~~~~~-~~---~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~--~~~-~--~~~~~~~~- 165 (321)
|+|+.... .+ ....+++.|+|---.|+.+..+... .+-+.++...||+.++.... .+. . ...+.+..
T Consensus 86 l~yt~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~~~---~iDp~~f~D~dG~~Yl~~~~~~~~~g~~~~~~i~~~~l 162 (533)
T 1yif_A 86 LIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKLNSS---GFDASLFHDTDGKKYLLNMLWDHRIDRHSFGGIVIQEY 162 (533)
T ss_dssp EEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCCS---CSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEEE
T ss_pred EEEEeccCCCCCcccccEEEEEeCCCCCCccccEEcCCC---cCCCceEECCCCCEEEEEEecccccCCCCCCCEEEEEE
Confidence 99884222 11 1235677888754569987655321 12233344468987665321 110 0 12344444
Q ss_pred ECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC-CCC-CCC
Q 020796 166 TVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT-QLL-NPN 238 (321)
Q Consensus 166 S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~-~~~-~~~ 238 (321)
+.|..+.......+ ..+......| |.+.. .+|.+++++.... ....+.+++|++---.|+... ++ ... .+.
T Consensus 163 ~~d~~~~~g~~~~i-~~~~~~~~~EgP~i~k-~~G~YYL~~s~gg~~~~~~v~~~rs~s~~GP~~~~~~~pil~~~~~~~ 240 (533)
T 1yif_A 163 SDKEQKLIGKPKVI-FEGTDRKLTEAPHLYH-IGNYYYLLTAEGGTRYEHAATIARSANIEGPYEVHPDNPILTSWHDPG 240 (533)
T ss_dssp ETTTTEECSCCEEE-ECCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEECTTCTT
T ss_pred CCccCCCCCCcEEE-EcCCCCCccccceEEE-ECCEEEEEEeCCCCCCCeEEEEEEECCCCceeeeCCCCceEecCCCCC
Confidence 55554433332222 2222222344 45555 4789998886532 123678888876544576532 11 001 011
Q ss_pred C-----c-eeEEEcCCCcEEEEEe
Q 020796 239 S-----G-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 239 ~-----~-~~~~~~~~g~~~lv~~ 256 (321)
. + ..++..++|+.++++.
T Consensus 241 ~~~~~~GH~~~v~~~~G~w~~~~~ 264 (533)
T 1yif_A 241 NPLQKCGHASIVQTHTDEWYLAHL 264 (533)
T ss_dssp SSSEEEEEEEEEECTTSCEEEEEE
T ss_pred CceEcCCCCeEEECCCCCEEEEEE
Confidence 1 1 2356677899999874
|
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.58 Score=42.64 Aligned_cols=193 Identities=9% Similarity=-0.014 Sum_probs=104.6
Q ss_pred CCccccceEEEecCCcEEEEEecCCCCC-CCCcEEEEEEeCCC-CcCCcEEc-cCCC------CCCCCCeEEEEe-CCCc
Q 020796 24 FKSCHASTIVEVDKGHFLVAYFGGSCEG-APDVKIWLQTFKDG-RWQSPIIA-DEEP------NVPMWNPVLFKL-PSNG 93 (321)
Q Consensus 24 ~~~~~~p~l~~~~~g~l~~~~~~~~~~g-~~~~~i~~s~s~~G-tWs~~~~~-~~~~------~~~~~~p~l~~~-~~G~ 93 (321)
--++|.|.|+... |+++++- .....+ ..-..+.+.+|+|. +|+....+ ...+ ....+.|.+... .+|+
T Consensus 21 ~I~aHDPsIi~~~-g~YYly~-T~~~~~~~~~~gi~v~sS~DLvnW~~~G~aL~~~~~~~~~~~~~~WAP~V~y~~~dGk 98 (441)
T 3nqh_A 21 IVNAHGACIVEEN-GRYYLFG-EYKSDKSNAFPGFSCYSSDDLVNWKFERVVLPMQSSGILGPDRVGERVKVMKCPSTGE 98 (441)
T ss_dssp BCCCEEEEEEEET-TEEEEEE-ECCCSSCSSCCCEEEEEESSSSSCEEEEEEECCCSSSTTSTTEEEEEEEEEECTTTCC
T ss_pred EEEccCCEEEEEC-CEEEEEE-EcCCccCCCCCCeeEEECCCCCCcEECceeeccCCccccCCCCccCCceeEEEccCCE
Confidence 4567999998754 7888643 322111 11123677788887 99986543 3221 122467887664 5899
Q ss_pred EEEEEEeccc-cCCceeEEEEecCCCCCCCCCccCC-CCC-CCCCCCccEEccCCeEEEeeecccCCCCcEEEEEECCCC
Q 020796 94 LLLFYKIGQE-VQKWSGCMKRSYNKGVTWSEREQLP-PGI-LGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAG 170 (321)
Q Consensus 94 l~l~~~~~~~-~~~~~~~~~~S~D~G~TWs~~~~l~-~~~-~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G 170 (321)
.+|+|..... .+.....++.|++=---|+....+. .+. ...+-..++...||+.++.... ..+..-+++.
T Consensus 99 YYLyyt~~~~~~~~~~igVAtSdsP~GPwt~~gpl~~~g~~~~~IDPsvF~DdDGk~YL~~g~-------~~I~eLs~D~ 171 (441)
T 3nqh_A 99 YVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHG-------GIVYRLSKDY 171 (441)
T ss_dssp EEEEEEEEETTSCSCEEEEEEESSTTSCCEEEEECEETTEECCCCSEEEEECTTSCEEEEEGG-------GEEEEECTTS
T ss_pred EEEEEEeCCCCCCcceEEEEEeCCCCCCceEcceeecCCCcccccCceEEEeCCCCEEEEeCC-------CcEEEeCCcc
Confidence 9999885321 1123456778876334587643332 121 1112222344457887765321 1244555666
Q ss_pred ceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCC
Q 020796 171 RSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 171 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~ 228 (321)
.++.... ..+.+.. ..-.|.+.. .+|..++++.... ....+.+++|++----|+.
T Consensus 172 ~~~~g~~-~~i~~g~-~~EgP~i~K-~~G~YYL~~S~~~g~~~~~~~~arS~s~~GPw~~ 228 (441)
T 3nqh_A 172 RTAEEKV-VSGVGGS-HGESPAMFK-KDGTYFFLFSNLTSWEKNDNFYFTAPSVKGPWTR 228 (441)
T ss_dssp SSEEEEE-ESCSTTC-CCEEEEEEE-ETTEEEEEEECSCTTSCCCCEEEEESSTTCCCEE
T ss_pred ccccCce-EEeCCCC-ceECcEEEE-ECCEEEEEEeCCCCcCCCceEEEEeCCCCCCceE
Confidence 6776432 2222211 112356665 4789998886532 1234567777765445664
|
| >1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.032 Score=52.64 Aligned_cols=146 Identities=16% Similarity=0.185 Sum_probs=82.3
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCCce----eEEEEecCCCCCCCCCcc-CCCCC----CCCCCCccEEccCCeEEEee
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWS----GCMKRSYNKGVTWSEREQ-LPPGI----LGPSKNKPILLENGLLLCGS 151 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~~~----~~~~~S~D~G~TWs~~~~-l~~~~----~g~~~~~~~~~~~G~~~~~~ 151 (321)
..+|.-+.--+|+.+|||+.......|. -..+.|+| ..+|..... |.++. .|+..+.++...+|++++.
T Consensus 20 ~NDPnG~~~~~G~yHlFYQ~~P~~~~~g~~~~WgHa~S~D-lv~W~~~~~aL~P~~~~D~~Gv~SGsav~~~dg~~~l~- 97 (543)
T 1st8_A 20 MNDPNGPMLYQGVYHFFYQYNPYAATFGDVIIWGHAVSYD-LVNWIHLDPAIYPTQEADSKSCWSGSATILPGNIPAML- 97 (543)
T ss_dssp EEEEEEEEEETTEEEEEEEEESSCSSCCSCCEEEEEEESS-SSSEEECCCSBCCCSGGGTTEEEEEEEEEETTTEEEEE-
T ss_pred eECCcccEEECCEEEEEEeeCCCCCCCCCccEEEEEECCC-ccceEECCeeccCCCccccCCEEcceEEEeeCCEEEEE-
Confidence 4456522223899999998643322222 13567776 599965433 34421 2333444555568886554
Q ss_pred ecc--cCCCCcEEEEEECCCC----ceeEEe--eceecCCC---CcceeeeeE-EEcCCCeEEEEEeec-CCCCcEEEEE
Q 020796 152 SVE--SWNSWGSWMEVTVDAG----RSWRKY--GPIYIPNE---SLSVIQPVP-FHTANRTLRVLMRSF-NGIGRVCMSE 218 (321)
Q Consensus 152 ~~~--~~~~~~~~~~~S~D~G----~tW~~~--~~~~~~~~---~~~~~~~~~-~~~~~G~l~~~~r~~-~~~~~~~~~~ 218 (321)
|.. ........+++|+|+| .+|++. .|+..++. ...+..|.+ ....+|+.+|++-.. ...+.+.+.+
T Consensus 98 YTg~~~~~~q~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~g~~~~~fRDP~vvw~~~~g~w~mv~ga~~~~~G~i~ly~ 177 (543)
T 1st8_A 98 YTGSDSKSRQVQDLAWPKNLSDPFLREWVKHPKNPLITPPEGVKDDCFRDPSTAWLGPDGVWRIVVGGDRDNNGMAFLYQ 177 (543)
T ss_dssp EEEECTTSCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTCCTTSEECCCCCEECTTSCEEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCCcEEEEEEEECCCCCCCcceeEEcCCCcEEeCCCCCCcCccCCCeEEEECCCCcEEEEEEEecCCceEEEEEE
Confidence 321 1112345678999875 899985 34432221 123456764 433688887776332 2235677778
Q ss_pred eccCCcCCCCC
Q 020796 219 SCDGGLTWSYA 229 (321)
Q Consensus 219 S~D~G~tWs~~ 229 (321)
|.| ..+|+..
T Consensus 178 S~D-l~~W~~~ 187 (543)
T 1st8_A 178 STD-FVNWKRY 187 (543)
T ss_dssp ESS-SSSCEEC
T ss_pred CCC-CCCcEEC
Confidence 877 7999864
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.49 Score=43.66 Aligned_cols=216 Identities=13% Similarity=0.172 Sum_probs=114.4
Q ss_pred CCeEEEEeCCCcEEEEEEeccccCCce-eEEEEecCCCCCCCCCccCC---CCCC----CCCCCccEEccCCeEEEeeec
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEVQKWS-GCMKRSYNKGVTWSEREQLP---PGIL----GPSKNKPILLENGLLLCGSSV 153 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~~~~~-~~~~~S~D~G~TWs~~~~l~---~~~~----g~~~~~~~~~~~G~~~~~~~~ 153 (321)
.+|.++...+|+.+++.+. . .+. ..+.+|+| ..+|+....+. +... +.+..+-+...+|+.++....
T Consensus 20 ~DP~iir~~dg~YY~~~T~-~---~~~~i~i~~S~D-Lv~W~~~~~~~~w~~~~~~~~~~~~WAP~v~~~~Gkyylyys~ 94 (468)
T 3akh_A 20 ADPHIFKHTDGYYYFTATV-P---EYDRIVLRRATT-LQGLATAPETTIWTKHASGVMGAHIWAPEIHFIDGKWYVYFAA 94 (468)
T ss_dssp EEEEEEECTTSCEEEEEEC-T---TCCEEEEEEESS-TGGGGGCCCEEEEECCSSSTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEecCCEEEEEEEe-C---CCCCEEEEECCC-ccccccCCCcceecCCCCCCCCCCEecceEEEECCEEEEEEEe
Confidence 6788877568888877653 1 123 34667776 67887654211 1100 001111233358887654322
Q ss_pred ccCC---CCcEEEEE--ECCC-CceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC----CCCcEEEEEeccCC
Q 020796 154 ESWN---SWGSWMEV--TVDA-GRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN----GIGRVCMSESCDGG 223 (321)
Q Consensus 154 ~~~~---~~~~~~~~--S~D~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~----~~~~~~~~~S~D~G 223 (321)
.... ...+.++. |+|- --.|+....+..+ .....+.|.++. .||+.++++.... ....+++++..|.
T Consensus 95 ~~~~~~~~~~i~va~~~s~dp~~Gpw~~~g~~~~~-~~~~~IDp~vf~-ddG~~Yl~~g~~~~~~~~~~~i~i~~l~~~- 171 (468)
T 3akh_A 95 GSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATP-VSSFSLDATTFV-VNGVRHLAWAQRNPAEDNNTSLFIAKMANP- 171 (468)
T ss_dssp ECSSCTTCCEEEEEEECCSCTTTSCCEEEEECCCS-SCSCEEEEEEEE-ETTEEEEEEEECCTTSSSSBEEEEEEEEET-
T ss_pred ECCCCCCceeEEEEEccCCCCCCCCCcccceeecC-CCCCcCcCeEEE-ECCEEEEEEEccCCCCCCCCcEEEEEeCCC-
Confidence 1111 22345554 5553 2479986543222 123567888888 7899999886532 1246777777653
Q ss_pred cCCCCC---ccCCCCC---------CCCceeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCC----C-CCCCcc--eee
Q 020796 224 LTWSYA---KPTQLLN---------PNSGIDGVKLKDGRLLLAYNTV---SRGVLKVALSKDD----G-DSWHDA--LTL 281 (321)
Q Consensus 224 ~tWs~~---~~~~~~~---------~~~~~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~----G-~tW~~~--~~l 281 (321)
|+.. ..+..+. ...+..+.. .+|.++|+|... ....+.+++|+.+ | .+|.+. -++
T Consensus 172 --~~~~g~~~~i~~~~~~we~~g~~~~EGP~i~k-~~G~YYL~ys~~g~~~~y~v~~a~s~~~~~~~gP~~w~~~~~pvl 248 (468)
T 3akh_A 172 --WTISGTPTEISQPTLSWETVGYKVNEGPAVIQ-HGGKVFLTYSASATDANYCLGMLSASASADLLNAASWTKSSQPVF 248 (468)
T ss_dssp --TEEEEEEEEEECCCSGGGCSSSCBEEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEEETTSCTTSGGGCEECSSCSB
T ss_pred --ceecCccEEecCCCcccccCCCccccCCEEEE-ECCEEEEEEEeCCCCCCceEEEEEECCCCCCCCcHHhccCCceEE
Confidence 3321 1111110 012234444 579999988642 3346778888532 2 247543 133
Q ss_pred cccC---CCceeceEEEEccCCe-EEEEEEe
Q 020796 282 EENL---AMEFSYPAVIQASDGS-VHITYTY 308 (321)
Q Consensus 282 ~~~~---~~~~~yp~~~~~~dg~-l~v~y~~ 308 (321)
.... ..+.++..+++..+|. .|++|-.
T Consensus 249 ~~~~~~~~~g~GH~svv~~~~G~~~~~vyH~ 279 (468)
T 3akh_A 249 KTSEATGQYGPGHNSFTVSEDGKSDILVYHD 279 (468)
T ss_dssp CCBTTTTBEEEEEEEEEECTTSCSEEEEEEE
T ss_pred EeCCCCceEeCCCceEEECCCCCEEEEEEec
Confidence 3211 1134577888778884 8888753
|
| >3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.21 Score=46.12 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=95.0
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEE--eCC---CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQT--FKD---GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~--s~~---GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
....+|.|... +|+.++.|......+.....|.+.+ +++ |.|+.+..+.........+|.++. .+|+.||+|.
T Consensus 74 ~~~WAP~v~~~-~Gkyylyys~~~~~~~~~~~i~va~~~s~dp~~Gpw~~~g~~~~~~~~~~IDp~vf~-ddG~~Yl~~g 151 (468)
T 3akh_A 74 AHIWAPEIHFI-DGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGSWTEKGQIATPVSSFSLDATTFV-VNGVRHLAWA 151 (468)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEECSSCTTCCEEEEEEECCSCTTTSCCEEEEECCCSSCSCEEEEEEEE-ETTEEEEEEE
T ss_pred CCEecceEEEE-CCEEEEEEEeECCCCCCceeEEEEEccCCCCCCCCCcccceeecCCCCCcCcCeEEE-ECCEEEEEEE
Confidence 45678999876 5888887655432222244566643 443 689987655322233456788888 6999999997
Q ss_pred eccc--cCCceeEEEEecCCCCCC-CCCccCC-CCC----CC--CCCCccEEccCCeEEEeeecccC-CCCcEEEEEECC
Q 020796 100 IGQE--VQKWSGCMKRSYNKGVTW-SEREQLP-PGI----LG--PSKNKPILLENGLLLCGSSVESW-NSWGSWMEVTVD 168 (321)
Q Consensus 100 ~~~~--~~~~~~~~~~S~D~G~TW-s~~~~l~-~~~----~g--~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~S~D 168 (321)
.... ......++...+|. -+. .++..+. +.. .+ ..+++.+...+|..++....... ....+.+++|+.
T Consensus 152 ~~~~~~~~~~~i~i~~l~~~-~~~~g~~~~i~~~~~~we~~g~~~~EGP~i~k~~G~YYL~ys~~g~~~~y~v~~a~s~~ 230 (468)
T 3akh_A 152 QRNPAEDNNTSLFIAKMANP-WTISGTPTEISQPTLSWETVGYKVNEGPAVIQHGGKVFLTYSASATDANYCLGMLSASA 230 (468)
T ss_dssp ECCTTSSSSBEEEEEEEEET-TEEEEEEEEEECCCSGGGCSSSCBEEEEEEEEETTEEEEEEEESCSSTTCEEEEEEEET
T ss_pred ccCCCCCCCCcEEEEEeCCC-ceecCccEEecCCCcccccCCCccccCCEEEEECCEEEEEEEeCCCCCCceEEEEEECC
Confidence 4211 01123455565543 222 1222222 110 11 13334444568876654322111 234577888863
Q ss_pred C----C-ceeEEee-ceecCCC---CcceeeeeEEEcCCCe-EEEEEe
Q 020796 169 A----G-RSWRKYG-PIYIPNE---SLSVIQPVPFHTANRT-LRVLMR 206 (321)
Q Consensus 169 ~----G-~tW~~~~-~~~~~~~---~~~~~~~~~~~~~~G~-l~~~~r 206 (321)
+ | .+|+... ++..... ..+.-+.+++...+|+ .++++.
T Consensus 231 ~~~~~gP~~w~~~~~pvl~~~~~~~~~g~GH~svv~~~~G~~~~~vyH 278 (468)
T 3akh_A 231 SADLLNAASWTKSSQPVFKTSEATGQYGPGHNSFTVSEDGKSDILVYH 278 (468)
T ss_dssp TSCTTSGGGCEECSSCSBCCBTTTTBEEEEEEEEEECTTSCSEEEEEE
T ss_pred CCCCCCcHHhccCCceEEEeCCCCceEeCCCceEEECCCCCEEEEEEe
Confidence 2 3 3698653 3322111 1233345778788884 777764
|
| >2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.045 Score=51.67 Aligned_cols=146 Identities=21% Similarity=0.278 Sum_probs=82.8
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCcc-CCCC----CCCCCCCccEEccCCeEEEeee
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSEREQ-LPPG----ILGPSKNKPILLENGLLLCGSS 152 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~~-l~~~----~~g~~~~~~~~~~~G~~~~~~~ 152 (321)
..+|.-+.--+|+.+|||+.......|. -..+.|+| ..+|..... |.++ ..|+..+.+++..+|++++. |
T Consensus 21 ~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~aL~P~~~~D~~G~~SGsav~~~dg~~~l~-Y 98 (541)
T 2ac1_A 21 MNDPNGPMIYKGIYHLFYQWNPKGAVWGNIVWAHSTSTD-LINWDPHPPAIFPSAPFDINGCWSGSATILPNGKPVIL-Y 98 (541)
T ss_dssp EEEEEEEEEETTEEEEEEEECTTCSSSCSCEEEEEEESS-SSSBEEEEEEECCCSGGGTTCEEEEEEEECTTSCEEEE-E
T ss_pred eeCCCccEEECCEEEEEEeeCCCCCCCCCcEEEEEECCC-ccceEECceeecCCCccccCCEEcceEEEeeCCEEEEE-E
Confidence 4456522223899999998643322221 13567776 599975533 4442 12334445555568886554 3
Q ss_pred cc--cCCCCcEEEEEECCCC----ceeEEe--eceecCC--C---CcceeeeeE-EEcCCCeEEEEEeec-CCCCcEEEE
Q 020796 153 VE--SWNSWGSWMEVTVDAG----RSWRKY--GPIYIPN--E---SLSVIQPVP-FHTANRTLRVLMRSF-NGIGRVCMS 217 (321)
Q Consensus 153 ~~--~~~~~~~~~~~S~D~G----~tW~~~--~~~~~~~--~---~~~~~~~~~-~~~~~G~l~~~~r~~-~~~~~~~~~ 217 (321)
.. ........+++|+|+| .+|++. .|+..++ . ...+..|.+ ...++|+.+|++... ...+.+.+.
T Consensus 99 Tg~~~~~~~~q~lA~s~D~~d~~l~~w~k~~~nPVi~~~~~~~~~~~~fRDP~vvw~~~~g~w~m~~ga~~~~~G~i~ly 178 (541)
T 2ac1_A 99 TGIDPKNQQVQNIAEPKNLSDPYLREWKKSPLNPLMAPDAVNGINASSFRDPTTAWLGQDKKWRVIIGSKIHRRGLAITY 178 (541)
T ss_dssp EEECTTSCEEEEEEEESCTTCTTCCCEEECTTCCSBCCCTTTCCCTTSEECCCCCEECTTSCEEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCcEEEEEEEECCCCCCCceeEEecCCCcEEcCCCCCCCCCCceECCeEEeEeCCCeEEEEEEEecCCceEEEEE
Confidence 21 1112345678999875 899985 3443222 1 123456764 343488888776432 223567777
Q ss_pred EeccCCcCCCCC
Q 020796 218 ESCDGGLTWSYA 229 (321)
Q Consensus 218 ~S~D~G~tWs~~ 229 (321)
+|.| ..+|+..
T Consensus 179 ~S~D-l~~W~~~ 189 (541)
T 2ac1_A 179 TSKD-FLKWEKS 189 (541)
T ss_dssp EESS-SSSCEEC
T ss_pred ECCC-CCCcEEc
Confidence 8877 7999864
|
| >3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.038 Score=51.89 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=83.6
Q ss_pred CCCCeE-EEEeCCCcEEEEEEeccccCCce---eEEEEecCCCCCCCCCcc-CCCC----CCCCCCCccEEccCCeEEEe
Q 020796 80 PMWNPV-LFKLPSNGLLLFYKIGQEVQKWS---GCMKRSYNKGVTWSEREQ-LPPG----ILGPSKNKPILLENGLLLCG 150 (321)
Q Consensus 80 ~~~~p~-l~~~~~G~l~l~~~~~~~~~~~~---~~~~~S~D~G~TWs~~~~-l~~~----~~g~~~~~~~~~~~G~~~~~ 150 (321)
-..+|. ++. -+|+-+|||+..+....|. -..+.|+| ..+|+.... |.++ ..|+..+.+++..+|.+++.
T Consensus 30 wmNDPNG~~y-~~G~YHLFYQ~nP~~~~wg~~~WGHa~S~D-LvhW~~~p~AL~P~~~~D~~G~~SGSavv~~dg~~~l~ 107 (546)
T 3ugf_A 30 WMSDPDGPIF-YKGWYHFFYQYNPDNPVWGNNTWGHTVSRD-LIHWLYLPLALAADQWYDMQGVFSGSATCLPDGRIMML 107 (546)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEEESSCSSSCSCEEEEEEESS-SSSCEECCCCBCSCSGGGTTCEEEEEEEECTTSCEEEE
T ss_pred CccCCceeEE-ECCEEEEEEecCCCCCCCCCcEEEEEEcCC-cCccccCCCCCCCCcccccCCcCcceEEEeeCCeEEEE
Confidence 344565 333 3899999998643322221 13567876 699986433 4443 23334444555678887554
Q ss_pred eecccCC-CCcEEEEEECCCC----ceeEEee--ceecCCC---CcceeeeeE-EEcCCCeEEEEEeec-CCCCcEEEEE
Q 020796 151 SSVESWN-SWGSWMEVTVDAG----RSWRKYG--PIYIPNE---SLSVIQPVP-FHTANRTLRVLMRSF-NGIGRVCMSE 218 (321)
Q Consensus 151 ~~~~~~~-~~~~~~~~S~D~G----~tW~~~~--~~~~~~~---~~~~~~~~~-~~~~~G~l~~~~r~~-~~~~~~~~~~ 218 (321)
....... .....+++|+|+| .+|++.. |+..++. ...+..|.+ ....+|+.+|+.-.. ...+.+.+.+
T Consensus 108 YTg~~~~~~q~q~lA~S~D~~d~~l~~w~K~~~nPVi~~p~g~~~~~fRDPkVvw~~~~g~w~MviGa~~~~~G~vllY~ 187 (546)
T 3ugf_A 108 YTGVTKEMVEMLSLAYPADLSDPLLVEWVKYPGNPILSAPPGVSPTEFRDASTGWYVSNGTWRIAIGAKYNTTGIAMVYE 187 (546)
T ss_dssp EEEECTTCCEEEEEEEESCTTCTTCCCEEECTTCCCBCCCTTSCTTSCCCBCCCEECSTTCEEEEEEEEETTEEEEEEEE
T ss_pred EEeccCCCcEEEEEEEECCCCCCccceeEEcCCCceEeCCCCCCcceeeccceEeECCCCEEEEEEEEccCCcceEEEEE
Confidence 2111111 2235688999986 8999853 4432221 123455774 334678877765332 2235676778
Q ss_pred eccCCcCCCCCc
Q 020796 219 SCDGGLTWSYAK 230 (321)
Q Consensus 219 S~D~G~tWs~~~ 230 (321)
|.| .++|+...
T Consensus 188 S~D-L~~W~~~~ 198 (546)
T 3ugf_A 188 TKD-FKSFKLLE 198 (546)
T ss_dssp ESS-SSSCEECS
T ss_pred CCC-CCCceEcc
Confidence 877 79998643
|
| >3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.93 Score=42.46 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=108.2
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCcee-EEEEecCCCCCCCCCccCCC-CC---CC---CCCCccEEc-cCCeEEEe
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSG-CMKRSYNKGVTWSEREQLPP-GI---LG---PSKNKPILL-ENGLLLCG 150 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~-~~~~S~D~G~TWs~~~~l~~-~~---~g---~~~~~~~~~-~~G~~~~~ 150 (321)
...+|.++.. +|+.|++.+.......+.+ .+.+|+| ..+|+....+.+ .. .. ...+.++.. .+|+.++.
T Consensus 57 ~a~DP~Ii~~-~g~YY~~~T~~~~~~~~~gi~v~~S~D-Lv~W~~~g~~l~~~~~~~~~~~~~WAP~v~~~~~~Gkyymy 134 (526)
T 3vsf_A 57 HAHGGGMLKH-GDYYYWYGEYRDDSNLFLGVSCYRSKD-LVNWEYRGEVLSRNSAPELNHCNIERPKVMYNASTGEFVMW 134 (526)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEECTTSSEEEEEEEEESS-SSSCEEEEEEEETTSSGGGSSCEEEEEEEEECTTTCCEEEE
T ss_pred eccCCeEEEE-CCEEEEEEecCCCCCCcCcEEEEECCC-CCCcCCCCccCCCCCCcCcccCceECCEEEEECCCCEEEEE
Confidence 3457888774 7888887663211122233 4666766 789987765322 11 00 111112222 27887654
Q ss_pred eecc---cCCCCcEEEEEECCCCceeEEeeceec-CCC--------CcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEE
Q 020796 151 SSVE---SWNSWGSWMEVTVDAGRSWRKYGPIYI-PNE--------SLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSE 218 (321)
Q Consensus 151 ~~~~---~~~~~~~~~~~S~D~G~tW~~~~~~~~-~~~--------~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~ 218 (321)
...+ .+....+.++.|++---.|+....+.. ... ....+.|.++...||+.++++.... ...+++++
T Consensus 135 ~~~~~~~~~~~~~igvats~~p~Gpw~~~g~~~p~~~~g~~~~~~~~~~~iDp~vf~D~dG~~Yl~~~~~~-~~~i~i~~ 213 (526)
T 3vsf_A 135 MHWENGINYGQARAAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDTDGKGYFISAANE-NMDLHLYE 213 (526)
T ss_dssp EEEECSSCSCCCEEEEEEESSSSSCCEEEEEECSSCTTCCEETTEESCCCCSEEEEECTTSCEEEEEEETT-TTEEEEEE
T ss_pred EEeeCCCCCCcceEEEEEcCCCCCCCEeccccccccccccccCCCCCcccccccEEECCCCCEEEEEEecC-CCceEEEE
Confidence 3322 122346778888875456875432211 100 1345778888888999999886542 24566665
Q ss_pred eccCCcCCCCCccCCCC-CCCCceeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCCCCCCCcceeec
Q 020796 219 SCDGGLTWSYAKPTQLL-NPNSGIDGVKLKDGRLLLAYNTV---SRGVLKVALSKDDGDSWHDALTLE 282 (321)
Q Consensus 219 S~D~G~tWs~~~~~~~~-~~~~~~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~G~tW~~~~~l~ 282 (321)
-.+.+.++......-.+ ....+..+.. .+|+.+|++... ....+.+++|++=--.|+....+.
T Consensus 214 l~~d~~~~~~~~~~~~~g~~~EgP~i~k-~~G~YYL~~S~~tg~~~~~~~~a~S~s~~GPw~~~~~~~ 280 (526)
T 3vsf_A 214 LTPDYKNIASLKAKLFVGQQREAPCLIK-RNGYYYLITSGCTGWNPNQAKYAYSKDLASGWSQLYNLG 280 (526)
T ss_dssp ECTTSSSEEEEEEEESTTSCCEEEEEEE-SSSCEEEEEECCCTTSCCCEEECEESCSSSCCCCCEEES
T ss_pred cCCCcccccCceEEeCCCCCcCCeEEEE-ECCEEEEEEcCCCCcCCCceEEEEeCCCCCCceeCCccC
Confidence 55555544432211111 1222344454 679999998642 223677888875434588765543
|
| >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=1.1 Score=41.99 Aligned_cols=220 Identities=13% Similarity=0.086 Sum_probs=115.9
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-C---------CCCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-E---------PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~---------~~~~~~~p~l~~~~~G~l 94 (321)
..+.|+|+... ++++++ ... .+..+ .|.+.+|+|- +|+....+.. . .....+.|.+... +|+.
T Consensus 11 ~~~DP~i~~~~-~~yY~~-~s~-~~~~~--gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~~~~~WAP~i~~~-~g~~ 84 (538)
T 3c2u_A 11 FNPDPSIVRAG-DDYYIA-TST-FEWFP--GVQIHHSKDLVHWHLVAHPLSTTEFLDMKGNPDSGGIWAPDLSYA-DGKF 84 (538)
T ss_dssp SCCSCEEEEET-TEEEEE-ECC-BTEES--BCEEEEESSSSSCEEEECSBCSTTTCCCTTCCTTCEECSCEEEEE-TTEE
T ss_pred CCCCCEEEEEC-CEEEEE-Ecc-CCCCC--CeEEEECCCCCCcEECccccCCcccccccCCCCCCCEECCeEEEE-CCEE
Confidence 45789998875 567764 221 11112 2566778887 9987654321 1 1134678998765 8999
Q ss_pred EEEEEeccc-cC---CceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeec--ccC--C-CCcEEEEE
Q 020796 95 LLFYKIGQE-VQ---KWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSV--ESW--N-SWGSWMEV 165 (321)
Q Consensus 95 ~l~~~~~~~-~~---~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~--~~~--~-~~~~~~~~ 165 (321)
+|+|+.... .+ ....++..|+|---.|+.|..+... .+-+.++...||+.++.... .+. . ...+.+..
T Consensus 85 yly~t~~~~~~g~~~~~~~~va~s~~p~Gpw~~p~~~~~~---~iDp~~f~DddG~~Yl~~~~~~~~~~~~~~~~i~~~~ 161 (538)
T 3c2u_A 85 WLIYTDVKVVDGMWKDCHNYLTTAEDIKGPWSKPILLNGA---GFDASLFHDPSGKKYLVNMYWDQRVYHHNFYGIALQE 161 (538)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEEESSTTCCCCCCEEEECS---CSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEE
T ss_pred EEEEEeccCCCCCcccccEEEEEECCCCCCccccEecCCC---cCCCeeEECCCCCEEEEEEecCCccCCCCCCCEEEEE
Confidence 999885322 11 1245677887754469987655321 12223344468987765321 110 0 02344444
Q ss_pred -ECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC-CCC-CC
Q 020796 166 -TVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT-QLL-NP 237 (321)
Q Consensus 166 -S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~-~~~-~~ 237 (321)
+.|.++.......+ ..+......| |.+.. .+|.+++++.... ....+.+++|++---.|+... ++ ... .+
T Consensus 162 l~~d~~~~~g~~~~i-~~~~~~~~~EgP~i~k-~~G~YYL~~s~gg~~~~~~~~~~rS~s~~GP~~~~~~~pil~~~~~~ 239 (538)
T 3c2u_A 162 YSVAEEKLIGKPEII-YKGTDIAYTEGPHLYY-INDMYYLMTAEGGTTYQHSETIARSKTIHGPYEIQPDYPLLSAWKEV 239 (538)
T ss_dssp EETTTTEECSCCEEE-ECCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSBCCTTCT
T ss_pred ECCccCCCCCCCEEE-ecCCCCCccccceEEE-ECCEEEEEEecCCCCCCeEEEEEEECCCCCCCccCCCCceEecCCCC
Confidence 44543322222222 1222222344 55555 4789998876532 123577788876544565422 11 101 01
Q ss_pred CCc------eeEEEcCCCcEEEEEe
Q 020796 238 NSG------IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~~------~~~~~~~~g~~~lv~~ 256 (321)
... ..++..++|+.+++|.
T Consensus 240 ~~~~~~~GH~~~v~~~~G~w~~~~~ 264 (538)
T 3c2u_A 240 HNPLQKCGHASLVETQNGQWYLAHL 264 (538)
T ss_dssp TCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred CCceEcCCCCeEEECCCCCEEEEEE
Confidence 111 2356667899999874
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.59 Score=43.36 Aligned_cols=173 Identities=12% Similarity=0.082 Sum_probs=95.6
Q ss_pred ccccceEEEe-cC--CcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcE---EccC-CCC----CCCCCeEEEEeCCC
Q 020796 26 SCHASTIVEV-DK--GHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPI---IADE-EPN----VPMWNPVLFKLPSN 92 (321)
Q Consensus 26 ~~~~p~l~~~-~~--g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~---~~~~-~~~----~~~~~p~l~~~~~G 92 (321)
....|.|+.. .+ |++++.|... ...|.+.++++ |.|+.+. ++.. .++ ....+|.++.+.+|
T Consensus 99 ~~WAP~v~~~~~~g~g~yylyyt~~------~~~i~va~s~~p~Gpw~~~~g~pli~~~~~g~~~~~~~iDp~vf~DddG 172 (487)
T 3c7f_A 99 ASWAPSIAVKKINGKDKFFLYFANS------GGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDG 172 (487)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEST------TBCEEEEEESSTTCCCBCSSSSCSBCTTSTTCTTCSSBCCCEEEECTTS
T ss_pred cCcchheEEEecCCCCeEEEEEEcC------CcEEEEEEeCCCCCCcccCCCCeEeecCCCCccCCCCccCCceEEcCCC
Confidence 4578999875 24 5777765432 12466777775 5899762 1221 122 23578999998899
Q ss_pred cEEEEEEecccc----------CCceeEEEEecCCCCCCCCCc-cCCCCCCCCCCCccEEccCCeEEEeeeccc------
Q 020796 93 GLLLFYKIGQEV----------QKWSGCMKRSYNKGVTWSERE-QLPPGILGPSKNKPILLENGLLLCGSSVES------ 155 (321)
Q Consensus 93 ~l~l~~~~~~~~----------~~~~~~~~~S~D~G~TWs~~~-~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~------ 155 (321)
+.||+|..+... .....++.+-.++..+|.... .+.... ..+++.+...+|..++......
T Consensus 173 ~~Yl~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~g~~~~i~~p~--~~Egp~i~k~~G~YYl~ys~~~~~t~~~ 250 (487)
T 3c7f_A 173 TGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSASTIDAPF--MFEDSGLHKYNGTYYYSYCINFGGTHPA 250 (487)
T ss_dssp CEEEEEECCCSSTTSCCHHHHHCCCCEEEEEECTTSSSEEEEEEEECCTT--EEEEEEEEEETTEEEEEEEECSSSCCCT
T ss_pred CEEEEECCcccCccccccccccCCCceEEEEECCCeeeccCccEEecCCc--eEecceEEEECCEEEEEEECCCCCCccc
Confidence 999999753110 011244555556677885432 232111 1233334445888665422211
Q ss_pred -CCCCcEEEEEECCCCceeEEeeceecCC-C---CcceeeeeEEEcCCCeEEEEEee
Q 020796 156 -WNSWGSWMEVTVDAGRSWRKYGPIYIPN-E---SLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 156 -~~~~~~~~~~S~D~G~tW~~~~~~~~~~-~---~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
.....+.+++|++=---|+...++...+ . ..+.-+++++.. +|+.++++..
T Consensus 251 ~~~~~~i~~~~S~s~~GP~~~~~~il~~~~~~~~~~g~gH~~v~~~-~G~w~~~yh~ 306 (487)
T 3c7f_A 251 DKPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNNHHAVFNF-KNEWYVVYHA 306 (487)
T ss_dssp TSCTTSEEEEEESSTTCCCEEEEEEECCHHHHHSSCCCCCEEEEEE-TTEEEEEEEE
T ss_pred CCCCceeEEEEcCCCCCCceECceeccCCCcccCCCCCCCceEEEE-CCeEEEEEec
Confidence 1234678889876433487665443221 0 112224567776 7888887743
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.45 Score=44.79 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=90.3
Q ss_pred CccccceEEEec-CCcEEEEEecCCCCCCCCcEEEEEEeC--CCC------------cCCcEEccCCCCCCCCCeEEEEe
Q 020796 25 KSCHASTIVEVD-KGHFLVAYFGGSCEGAPDVKIWLQTFK--DGR------------WQSPIIADEEPNVPMWNPVLFKL 89 (321)
Q Consensus 25 ~~~~~p~l~~~~-~g~l~~~~~~~~~~g~~~~~i~~s~s~--~Gt------------Ws~~~~~~~~~~~~~~~p~l~~~ 89 (321)
....+|.|.... +|++++.|... . .+.+.+++ .|- |+++..+. ....+|.++.+
T Consensus 81 ~~~WAP~i~~~~~~G~fYly~~~~-----~--~~~v~~a~~p~GPf~~g~~l~~~~~ws~~~~~~----~~~iDp~~f~D 149 (542)
T 3zxk_A 81 KGIWASTLRYRRSNDRFYWYGCVE-----G--RTYLWTSPGGNALANNGEVPPSAWNWQHTATID----NCYYDAGLLID 149 (542)
T ss_dssp CSBCSCEEEEETTTTEEEEEEEET-----T--EEEEEEEECTTGGGTTTCCCGGGCCCEEEEEES----SCCTTCEEEEC
T ss_pred CceECCcEEEECCCCEEEEEEECC-----C--cEEEEEECCCCCCccccccccccCccccccccC----CCCCCCcEEEc
Confidence 456789999885 69988765442 2 34444544 355 99887663 23457999999
Q ss_pred CCCcEEEEEEeccccCCceeEEEEecCCCCCC-CCCccCCCCCCC-CCCCccEEccCCeEEEeeecccCCCCcEEEEEEC
Q 020796 90 PSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTW-SEREQLPPGILG-PSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV 167 (321)
Q Consensus 90 ~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TW-s~~~~l~~~~~g-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~ 167 (321)
.||+.||+|.. ...++..-++++.+- .++..+..+..+ ..+++.+...+|..++... +. +....+++|+
T Consensus 150 dDG~~Yl~~g~------~~i~~~eL~~d~~~~~~~~~~i~~~~~g~~~EgP~i~k~~G~YYL~~s-~~--~~~~~v~rs~ 220 (542)
T 3zxk_A 150 DDDTMYIAYGN------PTINVAQLSPDGTRQVRVQQRVYAHPQGQTVEGARMYKIRGNYYILVT-RP--ADAEYVLRST 220 (542)
T ss_dssp TTSCEEEEECS------SSEEEEEECTTSSSEEEEEEEEECCTTCCCCEEEEEEEETTEEEEEEE-ET--TTEEEEEEES
T ss_pred CCCCEEEEEcC------CCEEEEEeCCccCcccCCcEEEEeCCCCccccccEEEEECCEEEEEEE-eC--CCCEEEEEEc
Confidence 89999999842 133454544443322 222223221112 2344445556887665533 21 2346788888
Q ss_pred CC---CceeEEeeceecCC-CC---cce-eeeeEEEcCCCeEEEEE
Q 020796 168 DA---GRSWRKYGPIYIPN-ES---LSV-IQPVPFHTANRTLRVLM 205 (321)
Q Consensus 168 D~---G~tW~~~~~~~~~~-~~---~~~-~~~~~~~~~~G~l~~~~ 205 (321)
.+ | -|+... +.... .. .|. .+.++++.++|+.++++
T Consensus 221 s~s~~G-Py~~~~-vl~~~~~~v~~~G~~~hg~iv~~~~G~w~~~~ 264 (542)
T 3zxk_A 221 TGSPFG-PYEART-LVSRIQGPLANAGFAHQGGIVDAPDGTWHYVA 264 (542)
T ss_dssp SSSTTC-CEEEEE-EEESCCCSSSSSCCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCC-CceECC-EecCCCcceeccCCCCCCEEEECCCCCEEEEE
Confidence 62 3 377653 32221 11 121 23468888899976553
|
| >3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.64 Score=43.42 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=71.2
Q ss_pred EEEEECCCCceeEEeeceecCCCCcce--eeeeEEEcCCC----------eEEEEEeecC---CCCcEEEEEeccCCcCC
Q 020796 162 WMEVTVDAGRSWRKYGPIYIPNESLSV--IQPVPFHTANR----------TLRVLMRSFN---GIGRVCMSESCDGGLTW 226 (321)
Q Consensus 162 ~~~~S~D~G~tW~~~~~~~~~~~~~~~--~~~~~~~~~~G----------~l~~~~r~~~---~~~~~~~~~S~D~G~tW 226 (321)
.-++|+| ..+|+... ++++ ...++ .-.++++.+++ .+++++.... ....+.+++|.|+|.+|
T Consensus 73 gHa~S~D-LvhW~~~~-~aL~-d~~g~~~~SGSav~~~~~~~g~~~~~~~~l~l~YTg~~~~~~~q~q~lA~s~D~g~~w 149 (516)
T 3sc7_X 73 GHATSTD-LMHWAHKP-TAIA-DENGVEAFTGTAYYDPNNTSGLGDSANPPYLAWFTGYTTSSQTQDQRLAFSVDNGATW 149 (516)
T ss_dssp EEEEESS-SSSCEEEE-EEEC-CBTTEEEEEEEEEECTTCTTSSSCSSSCCEEEEEEEEETTTTEEEEEEEEESSTTSCC
T ss_pred EEEEeCC-CCcceecC-cccc-CCCCceeEeceEEEeCCcccccccCCCCeEEEEEeeeeCCCCceEEEEEEecCCCceE
Confidence 4466765 59999875 4443 23344 44566666553 4888776532 12356789999999999
Q ss_pred CCCccCC-CCC----C-------CCc-eeEEEc-CCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceeecc
Q 020796 227 SYAKPTQ-LLN----P-------NSG-IDGVKL-KDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTLEE 283 (321)
Q Consensus 227 s~~~~~~-~~~----~-------~~~-~~~~~~-~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l~~ 283 (321)
++....+ +.. + ..+ +.+... .+|+.+|+.....+..+.++.|. |.++|+....+..
T Consensus 150 ~k~~~nPVi~~~~~~~~~~~~~~~fRDPkV~~~~~~g~w~mv~g~~~~~~i~ly~S~-DL~~W~~~~~l~~ 219 (516)
T 3sc7_X 150 TKFQGNPIISTSQEAPHDITGGLESRDPKVFFHRQSGNWIMVLAHGGQDKLSFWTSA-DTINWTWQSDLKS 219 (516)
T ss_dssp EECTTCCSBCHHHHTTTCTTSSSSCEEEEEEEETTTTEEEEEEECBTTCEEEEEEES-SSSSCEEEEEEEG
T ss_pred EEcCCCceEcCCCcccccccCCCcccCCeEEEECCCCeEEEEEEECCCCEEEEEECC-CCCCceEcccccc
Confidence 9753111 110 0 012 344443 45788888753345567788886 5899998765543
|
| >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=1.7 Score=40.66 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=118.4
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEc-cCC---------CCCCCCCeEEEEeCCCcE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIA-DEE---------PNVPMWNPVLFKLPSNGL 94 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~-~~~---------~~~~~~~p~l~~~~~G~l 94 (321)
..+.|+|+... ++++++. .. .+-.+ .|.+.+|+|- +|+....+ ... .....+.|.+... +|+.
T Consensus 12 ~~~DP~i~~~~-~~yY~~~-s~-~~~~~--gi~i~~S~DLv~W~~~g~~l~~~~~~~~~~~~~~~~~WAP~i~~~-~g~~ 85 (535)
T 2exh_A 12 FHPDPSICRVG-DDYYIAV-ST-FEWFP--GVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYS-DGKF 85 (535)
T ss_dssp SCCSCEEEEET-TEEEEEE-CC-BTEES--BCEEEEESSSSSCEEEECCBCSTTTCCCTTCCTTCBBCSCEEEEE-TTEE
T ss_pred CCCCCEEEEEC-CEEEEEE-CC-CCCCC--CeEEEECCCCCCcEECccccCCcccccccCCCCCCCEECCeEEEE-CCEE
Confidence 45779998775 6777643 21 11112 2566788887 99875533 211 1235788998764 8999
Q ss_pred EEEEEecccc-C---CceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeec--ccC-C--CCcEEEEE
Q 020796 95 LLFYKIGQEV-Q---KWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSV--ESW-N--SWGSWMEV 165 (321)
Q Consensus 95 ~l~~~~~~~~-~---~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~--~~~-~--~~~~~~~~ 165 (321)
+|+|+..... + ....+++.|+|-.-.|+.|..+... .+-+.++...||+.++.... .+. . ...+.+..
T Consensus 86 ylyyt~~~~~~g~~~~~~~~va~s~~~~Gpw~~p~~~~~~---~iDp~vf~DddG~~Yl~~~~~~~~~~~~~~~~i~~~~ 162 (535)
T 2exh_A 86 WLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSS---GFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQE 162 (535)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCCS---CSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEE
T ss_pred EEEEEeccCCCCCccccceEEEEeCCCCCCccccEecCCC---cCCCceEECCCCCEEEEEEecCCccCCCCCCcEEEEE
Confidence 9998853221 1 1235677888754569987655321 12233344457987665321 110 0 11344444
Q ss_pred -ECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC-CCC-CC
Q 020796 166 -TVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT-QLL-NP 237 (321)
Q Consensus 166 -S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~-~~~-~~ 237 (321)
+.|..+.......+. .+......| |.+.. .+|.+++++.... ....+.+++|++----|+... ++ ... .+
T Consensus 163 l~~d~~~~~g~~~~i~-~~~~~~~~EgP~i~k-~~G~YYL~~s~ggt~~~~~~~~~rs~s~~GP~~~~~~~pil~~~~~~ 240 (535)
T 2exh_A 163 YSVEQKKLVGEPKIIF-KGTDLRITEGPHLYK-INGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYP 240 (535)
T ss_dssp EETTTTEEEEEEEEEE-CCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEESTTCT
T ss_pred ECCccCCCCCCcEEEE-cCCCCCccccceEEE-ECCEEEEEEeCCCCCCCeEEEEEEeCCCCCCCccCCCcceEecCCCC
Confidence 566555555443332 232223344 55555 4789998875532 123577788876433454321 11 001 01
Q ss_pred CC-----c-eeEEEcCCCcEEEEEe
Q 020796 238 NS-----G-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ~~-----~-~~~~~~~~g~~~lv~~ 256 (321)
.. + ..++..++|+.++++.
T Consensus 241 ~~~~~~~GH~~~v~~~~G~w~~~~~ 265 (535)
T 2exh_A 241 RNPLQKAGHASIVHTHTDEWFLVHL 265 (535)
T ss_dssp TCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred CCceEcCCCCeEEECCCCCEEEEEE
Confidence 11 1 2356677899999874
|
| >3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.33 Score=44.24 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=87.5
Q ss_pred eeEEecCCCC----CCCccccceEEEe-cCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcEEcc-CCCCCCCCCe
Q 020796 13 EEFTFPANSA----PFKSCHASTIVEV-DKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPIIAD-EEPNVPMWNP 84 (321)
Q Consensus 13 ~~~~f~~~~~----~~~~~~~p~l~~~-~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~~~~-~~~~~~~~~p 84 (321)
...+|...+. +......|.|+.. .+|++++.|.... .+.....|.++++++ |-|+....+. ........+|
T Consensus 67 ~G~aL~~~~~~~~~~~~~~WAP~V~y~~~dGkYYLyyt~~~-~~~~~~~igVAtSdsP~GPwt~~gpl~~~g~~~~~IDP 145 (441)
T 3nqh_A 67 ERVVLPMQSSGILGPDRVGERVKVMKCPSTGEYVMYMHADD-MNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDM 145 (441)
T ss_dssp EEEEECCCSSSTTSTTEEEEEEEEEECTTTCCEEEEEEEEE-TTSCSCEEEEEEESSTTSCCEEEEECEETTEECCCCSE
T ss_pred CceeeccCCccccCCCCccCCceeEEEccCCEEEEEEEeCC-CCCCcceEEEEEeCCCCCCceEcceeecCCCcccccCc
Confidence 4456655422 1233578999876 4899888765432 222334577777764 7888744332 1111234689
Q ss_pred EEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCC-ccCCCCCCCCCCCccEEccCCeEEEeeec-ccCCCCcEE
Q 020796 85 VLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSER-EQLPPGILGPSKNKPILLENGLLLCGSSV-ESWNSWGSW 162 (321)
Q Consensus 85 ~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~-~~l~~~~~g~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~ 162 (321)
.+|.+.||+.||+|.. +.+.+-+++..++... ..+..+. ..+++.+...+|.-++.... ..+......
T Consensus 146 svF~DdDGk~YL~~g~--------~~I~eLs~D~~~~~g~~~~i~~g~--~~EgP~i~K~~G~YYL~~S~~~g~~~~~~~ 215 (441)
T 3nqh_A 146 GTYQDTDGTGYLLLHG--------GIVYRLSKDYRTAEEKVVSGVGGS--HGESPAMFKKDGTYFFLFSNLTSWEKNDNF 215 (441)
T ss_dssp EEEECTTSCEEEEEGG--------GEEEEECTTSSSEEEEEESCSTTC--CCEEEEEEEETTEEEEEEECSCTTSCCCCE
T ss_pred eEEEeCCCCEEEEeCC--------CcEEEeCCccccccCceEEeCCCC--ceECcEEEEECCEEEEEEeCCCCcCCCceE
Confidence 9999999999999852 1344555566666433 2232221 23444455567876554332 123333567
Q ss_pred EEEECCCCceeEEee
Q 020796 163 MEVTVDAGRSWRKYG 177 (321)
Q Consensus 163 ~~~S~D~G~tW~~~~ 177 (321)
+++|++=---|+...
T Consensus 216 ~arS~s~~GPw~~~g 230 (441)
T 3nqh_A 216 YFTAPSVKGPWTRQG 230 (441)
T ss_dssp EEEESSTTCCCEEEE
T ss_pred EEEeCCCCCCceECC
Confidence 888886434577654
|
| >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=1.6 Score=39.87 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=30.9
Q ss_pred CCcEEEEEEeCCC-----CcCCcEEccCC------------CCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 53 PDVKIWLQTFKDG-----RWQSPIIADEE------------PNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 53 ~~~~i~~s~s~~G-----tWs~~~~~~~~------------~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
.+..|++..+.+| +|+..-.+.+. +...++..+.+.+.+|+++|||+.
T Consensus 91 ~~~hi~~~ys~~g~~dl~~W~~~G~vfp~~~~~~~~~~~~~~~~g~WSGSAi~~~dG~i~LfYTg 155 (447)
T 1oyg_A 91 DDTSIYMFYQKVGETSIDSWKNAGRVFKDSDKFDANDSILKDQTQEWSGSATFTSDGKIRLFYTD 155 (447)
T ss_dssp TCCEEEEEEEETTCCSGGGCEEEEESCCTTHHHHTTCTTGGGCCEEEEEEEEECTTSCEEEEEEE
T ss_pred CceEEEEEECcCCCcccCCccCCCeecCCCccccccccccCCCCCEECCceEECcCCEEEEEEEe
Confidence 4556766666543 69875545432 123455666666579999999996
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.58 Score=43.22 Aligned_cols=144 Identities=10% Similarity=0.100 Sum_probs=77.6
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCC--CCcCCcE-EccCC-------C-------CCCCCCeEEEE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKD--GRWQSPI-IADEE-------P-------NVPMWNPVLFK 88 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~--GtWs~~~-~~~~~-------~-------~~~~~~p~l~~ 88 (321)
...+|.|+...+|+.++.|..... +.....|.++++++ |.|+.+. .+... + .....+|.++.
T Consensus 98 ~~WAP~vi~~~dGkyylyys~~~~-~~~~~~IgvatSddp~GPw~~~g~~l~~~~~~~~~dg~~~~~~~~~~~IDp~vf~ 176 (470)
T 2x8s_A 98 TLWAADVTQLADGKYYMYYNACRG-DSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVAPHTFF 176 (470)
T ss_dssp SCCCCEEEECTTSCEEEEEEEECS-SSCCEEEEEEEESSTTCCCEEEEEEEEECCSSBCTTSSBCCTTTSCCSCCCEEEE
T ss_pred ceECCeEEEecCCEEEEEEEeccC-CCCccEEEEEEeCCCCCCceeCCeeeccCcccccccccccccccCCCCCCCCEEE
Confidence 467899988778999987654322 22344677788875 5899873 33221 0 12356899999
Q ss_pred eCCCcEEEEEEeccccCCceeEEEEe-cCCCCCCCC---CccCCCCCCCCCCCccEE--ccCCeEEEeeecccC---CCC
Q 020796 89 LPSNGLLLFYKIGQEVQKWSGCMKRS-YNKGVTWSE---REQLPPGILGPSKNKPIL--LENGLLLCGSSVESW---NSW 159 (321)
Q Consensus 89 ~~~G~l~l~~~~~~~~~~~~~~~~~S-~D~G~TWs~---~~~l~~~~~g~~~~~~~~--~~~G~~~~~~~~~~~---~~~ 159 (321)
+.+|+.||+|... . + ..++... .|.|..-.. ...+..+.....+++.+. ..+|..++....... ..+
T Consensus 177 DdDG~~Yl~~g~~-~-~--gI~~~eL~~d~~~~~~~~~~~~~i~~g~~~~~EGP~i~~~K~~G~YYL~~S~g~~~~~~~y 252 (470)
T 2x8s_A 177 DKDGKLWMVYGSY-S-G--GIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLYLSYGGLDATGGY 252 (470)
T ss_dssp CTTSCEEEEECBS-T-T--CEEEEEBCTTTSSBCTTCTTCEEEECCSSCSEEEEEEEEETTTTEEEEEEEESBSSTTSBC
T ss_pred cCCCCEEEEeeec-C-C--cEEEEEECCccCcCcCCcccceEecCCCCCceeccEEEEEccCCEEEEEEEeCCCCCCCCc
Confidence 8899999998631 1 1 2344443 343332110 111111111123333343 347776654332111 134
Q ss_pred cEEEEEECCCCceeE
Q 020796 160 GSWMEVTVDAGRSWR 174 (321)
Q Consensus 160 ~~~~~~S~D~G~tW~ 174 (321)
.+.+++|++=---|+
T Consensus 253 ~v~~arS~s~~GP~~ 267 (470)
T 2x8s_A 253 NIRVARSKKPDGPYY 267 (470)
T ss_dssp EEEEEEESSTTCCCB
T ss_pred eEEEEEECCCCCCCC
Confidence 677888875322365
|
| >3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.37 Score=46.11 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=51.8
Q ss_pred EEEe-cCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCC-----cEEccCCCCC---CCCCeEEEEe-CCCcEEEEEEe
Q 020796 32 IVEV-DKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQS-----PIIADEEPNV---PMWNPVLFKL-PSNGLLLFYKI 100 (321)
Q Consensus 32 l~~~-~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~-----~~~~~~~~~~---~~~~p~l~~~-~~G~l~l~~~~ 100 (321)
+++. -+|..+++|.-.. .| ..-++|+|. +|.. +..+.++... .+...+.+.+ .+|+++++|+.
T Consensus 45 ~~yD~~~G~YHlFYQ~~P-~g-----WgHa~S~DLvhW~~~~~~~~~aL~P~~~~D~~G~~SGSav~~~~~g~~~~~YTg 118 (634)
T 3lig_A 45 HYTDPSTGLFHVGFLHDG-DG-----IAGATTANLATYTDTSDNGSFLIQPGGKNDPVAVFDGAVIPVGVNNTPTLLYTS 118 (634)
T ss_dssp CEECTTTCCEEEEEEETT-SC-----EEEEEESSSSCCEESCSTTCEEECSCSSSCSSEEEEEEEESSCGGGSCEEEEEE
T ss_pred ceEeCCCCEEEEEEecCC-Cc-----eeEEEecCcCceeECcCCCCceecCCCCCCCCCcEeeEEEEECCCCEEEEEEEe
Confidence 4442 3577777663321 22 456778898 9986 3455543221 2333333332 37999999985
Q ss_pred ccc----------cCCceeEEEEecCCCCCCCCC
Q 020796 101 GQE----------VQKWSGCMKRSYNKGVTWSER 124 (321)
Q Consensus 101 ~~~----------~~~~~~~~~~S~D~G~TWs~~ 124 (321)
... .+....++++|+|+|.+|++.
T Consensus 119 ~~~~~~~~~~~~~~~~q~Q~lA~S~D~g~~w~K~ 152 (634)
T 3lig_A 119 VSFLPIHWSIPYTRGSETQSLAVARDGGRRFDKL 152 (634)
T ss_dssp ECSCCCCTTSCCCTTSEEEEEEEEEGGGTEEEEC
T ss_pred cccccccccCcCCCCcEEEEEEEECCCCCEEEEC
Confidence 321 112345789999999999865
|
| >3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=6.2 Score=36.35 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=116.5
Q ss_pred ccccceEEEecCCcEEEEEecCCC----CC------C-CCcEEEEEEeCCC-CcCCcEEc-cCCC------------CCC
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSC----EG------A-PDVKIWLQTFKDG-RWQSPIIA-DEEP------------NVP 80 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~----~g------~-~~~~i~~s~s~~G-tWs~~~~~-~~~~------------~~~ 80 (321)
+.+.|+++.. +|++++....... .| . ....|.+.+|+|. +|+....+ ...+ ...
T Consensus 21 ~~~DP~i~~~-~g~yYly~t~~~~~~~~~g~~~~~~~~~~~~i~i~~S~DLv~W~~~g~v~~~~~~~~~~g~~~~~w~~~ 99 (487)
T 3c7f_A 21 LGADPVALTY-NGRVYIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIAKWAGA 99 (487)
T ss_dssp CCEEEEEEEE-TTEEEEEEECCCCEECTTSCEECCCSTTCCSEEEEEESSSSSEEEEEEECCBCSTTGGGGTCSBTTCSC
T ss_pred cCCCCCeEEE-CCEEEEEEcCCcccccccccccccccccccceEEEECCCCcCcEEccccccCCcccccccccccCcccc
Confidence 3578999876 6888875432110 01 0 0123667778887 99986543 2211 123
Q ss_pred CCCeEEEEe-CC--CcEEEEEEeccccCCceeEEEEecCCCCCCCCCc--c-CCCCCCC------CCCCccEEccCCeEE
Q 020796 81 MWNPVLFKL-PS--NGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSERE--Q-LPPGILG------PSKNKPILLENGLLL 148 (321)
Q Consensus 81 ~~~p~l~~~-~~--G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~--~-l~~~~~g------~~~~~~~~~~~G~~~ 148 (321)
.+.|.+... .+ |+.+|+|... .....+..|+|---.|+.+. + +.....+ .+-+.++...||+.+
T Consensus 100 ~WAP~v~~~~~~g~g~yylyyt~~----~~~i~va~s~~p~Gpw~~~~g~pli~~~~~g~~~~~~~iDp~vf~DddG~~Y 175 (487)
T 3c7f_A 100 SWAPSIAVKKINGKDKFFLYFANS----GGGIGVLTADSPIGPWTDPIGKPLVTPSTPGMSGVVWLFDPAVFVDDDGTGY 175 (487)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEST----TBCEEEEEESSTTCCCBCSSSSCSBCTTSTTCTTCSSBCCCEEEECTTSCEE
T ss_pred CcchheEEEecCCCCeEEEEEEcC----CcEEEEEEeCCCCCCcccCCCCeEeecCCCCccCCCCccCCceEEcCCCCEE
Confidence 677888753 24 6888888742 13456788887544598752 1 2211111 122223344579887
Q ss_pred EeeecccC-----------CCCcEEEEEECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC-------
Q 020796 149 CGSSVESW-----------NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN------- 209 (321)
Q Consensus 149 ~~~~~~~~-----------~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------- 209 (321)
+....... +.....+..-.++..+|.... ..+... ...| |.+.. .+|.+++++....
T Consensus 176 l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~g~~-~~i~~p--~~~Egp~i~k-~~G~YYl~ys~~~~~t~~~~ 251 (487)
T 3c7f_A 176 LYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGSA-STIDAP--FMFEDSGLHK-YNGTYYYSYCINFGGTHPAD 251 (487)
T ss_dssp EEEECCCSSTTSCCHHHHHCCCCEEEEEECTTSSSEEEEE-EEECCT--TEEEEEEEEE-ETTEEEEEEEECSSSCCCTT
T ss_pred EEECCcccCccccccccccCCCceEEEEECCCeeeccCcc-EEecCC--ceEecceEEE-ECCEEEEEEECCCCCCcccC
Confidence 65322100 112345555566788887543 222221 1233 55554 4789888764431
Q ss_pred -CCCcEEEEEeccCCcCCCCCccC-CC-------CCCCCceeEEEcCCCcEEEEEe
Q 020796 210 -GIGRVCMSESCDGGLTWSYAKPT-QL-------LNPNSGIDGVKLKDGRLLLAYN 256 (321)
Q Consensus 210 -~~~~~~~~~S~D~G~tWs~~~~~-~~-------~~~~~~~~~~~~~~g~~~lv~~ 256 (321)
....+.+++|++----|+...++ .. ..+. ...++.. +|+.+|+|.
T Consensus 252 ~~~~~i~~~~S~s~~GP~~~~~~il~~~~~~~~~~g~g-H~~v~~~-~G~w~~~yh 305 (487)
T 3c7f_A 252 KPPGEIGYMTSSSPMGPFTYRGHFLKNPGAFFGGGGNN-HHAVFNF-KNEWYVVYH 305 (487)
T ss_dssp SCTTSEEEEEESSTTCCCEEEEEEECCHHHHHSSCCCC-CEEEEEE-TTEEEEEEE
T ss_pred CCCceeEEEEcCCCCCCceECceeccCCCcccCCCCCC-CceEEEE-CCeEEEEEe
Confidence 12467778887654446643111 10 0111 2344555 789999985
|
| >3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=8.7 Score=36.02 Aligned_cols=207 Identities=9% Similarity=0.036 Sum_probs=109.5
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCC----------------CCCCCCCeEEEE
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEE----------------PNVPMWNPVLFK 88 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~----------------~~~~~~~p~l~~ 88 (321)
..+.|+|+... ++.+++ .. +.+-.+ .+.+.+|+|= +|+....+.+. .....|.|.+..
T Consensus 16 ~~~DP~iir~~-~~YY~~-~s-t~~~~p--g~~i~~S~DLvnW~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~WAP~i~~ 90 (542)
T 3zxk_A 16 DHPALEVFRVG-SVFYYS-SS-TFAYSP--GAPVLKSYDLVHWTPVTHSVPRLNFGSNYDLPSGTPGAYVKGIWASTLRY 90 (542)
T ss_dssp CCCSCEEEEET-TEEEEE-CC-CBTEES--EEEEEEESSSSSCEEEEEEESSCCSCGGGGCCSSTTTTTTCSBCSCEEEE
T ss_pred CCCCCeEEEEC-CEEEEE-Ee-cCccCC--CeEEEEcCCCCCccccccccccCCccccccccCCcccccCCceECCcEEE
Confidence 35789998875 577664 22 111112 3667788886 99976543210 123578899876
Q ss_pred e-CCCcEEEEEEeccccCCceeEEEEecCC-CC-----------CCCCCccCCCCCCCCCCCccEEccCCeEEEeeeccc
Q 020796 89 L-PSNGLLLFYKIGQEVQKWSGCMKRSYNK-GV-----------TWSEREQLPPGILGPSKNKPILLENGLLLCGSSVES 155 (321)
Q Consensus 89 ~-~~G~l~l~~~~~~~~~~~~~~~~~S~D~-G~-----------TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~ 155 (321)
. .+|+.|++|... ....+..|+|= |. .|+.+..+... .+-+.++...||+.++.. .
T Consensus 91 ~~~~G~fYly~~~~-----~~~~v~~a~~p~GPf~~g~~l~~~~~ws~~~~~~~~---~iDp~~f~DdDG~~Yl~~-g-- 159 (542)
T 3zxk_A 91 RRSNDRFYWYGCVE-----GRTYLWTSPGGNALANNGEVPPSAWNWQHTATIDNC---YYDAGLLIDDDDTMYIAY-G-- 159 (542)
T ss_dssp ETTTTEEEEEEEET-----TEEEEEEEECTTGGGTTTCCCGGGCCCEEEEEESSC---CTTCEEEECTTSCEEEEE-C--
T ss_pred ECCCCEEEEEEECC-----CcEEEEEECCCCCCccccccccccCccccccccCCC---CCCCcEEEcCCCCEEEEE-c--
Confidence 5 369988887652 24556677652 32 28877655321 122334455689987753 1
Q ss_pred CCCCcEEEEEECCCCceeE-EeeceecCCCCcc-eee-eeEEEcCCCeEEEEEeecCCCCcEEEEEeccC--CcCCCCCc
Q 020796 156 WNSWGSWMEVTVDAGRSWR-KYGPIYIPNESLS-VIQ-PVPFHTANRTLRVLMRSFNGIGRVCMSESCDG--GLTWSYAK 230 (321)
Q Consensus 156 ~~~~~~~~~~S~D~G~tW~-~~~~~~~~~~~~~-~~~-~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~--G~tWs~~~ 230 (321)
...+.+..-++++.+-. ....+ ..+. .+ ..| |.+.. .+|.+++++.... ..+.+++|+.+ ---|+...
T Consensus 160 --~~~i~~~eL~~d~~~~~~~~~~i-~~~~-~g~~~EgP~i~k-~~G~YYL~~s~~~--~~~~v~rs~s~s~~GPy~~~~ 232 (542)
T 3zxk_A 160 --NPTINVAQLSPDGTRQVRVQQRV-YAHP-QGQTVEGARMYK-IRGNYYILVTRPA--DAEYVLRSTTGSPFGPYEART 232 (542)
T ss_dssp --SSSEEEEEECTTSSSEEEEEEEE-ECCT-TCCCCEEEEEEE-ETTEEEEEEEETT--TEEEEEEESSSSTTCCEEEEE
T ss_pred --CCCEEEEEeCCccCcccCCcEEE-EeCC-CCccccccEEEE-ECCEEEEEEEeCC--CCEEEEEEcCCCCCCCceECC
Confidence 22455555555543322 22112 1211 12 334 45554 5789998876532 34666777651 11243311
Q ss_pred cC-C----CCCCC-Cce-eEEEcCCCcEEEEE
Q 020796 231 PT-Q----LLNPN-SGI-DGVKLKDGRLLLAY 255 (321)
Q Consensus 231 ~~-~----~~~~~-~~~-~~~~~~~g~~~lv~ 255 (321)
.+ . +.... ..+ .++..++|+.++++
T Consensus 233 vl~~~~~~v~~~G~~~hg~iv~~~~G~w~~~~ 264 (542)
T 3zxk_A 233 LVSRIQGPLANAGFAHQGGIVDAPDGTWHYVA 264 (542)
T ss_dssp EEESCCCSSSSSCCCEEEEEEECTTSCEEEEE
T ss_pred EecCCCcceeccCCCCCCEEEECCCCCEEEEE
Confidence 11 0 11111 112 36777889988775
|
| >3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.91 Score=43.40 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred cCCeEEEeeecccCCCCcEEEEEECCCCceeEEee---ceecCC----CCcceeeeeEEEc-CCCeEEEEEeecC-----
Q 020796 143 ENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYG---PIYIPN----ESLSVIQPVPFHT-ANRTLRVLMRSFN----- 209 (321)
Q Consensus 143 ~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~---~~~~~~----~~~~~~~~~~~~~-~~G~l~~~~r~~~----- 209 (321)
.+|...+. |. ++.+.-.-++|+| ..+|+... ++++.+ ...||.--+++.. .+|++++++....
T Consensus 50 ~~G~YHlF-YQ--~~P~gWgHa~S~D-LvhW~~~~~~~~~aL~P~~~~D~~G~~SGSav~~~~~g~~~~~YTg~~~~~~~ 125 (634)
T 3lig_A 50 STGLFHVG-FL--HDGDGIAGATTAN-LATYTDTSDNGSFLIQPGGKNDPVAVFDGAVIPVGVNNTPTLLYTSVSFLPIH 125 (634)
T ss_dssp TTCCEEEE-EE--ETTSCEEEEEESS-SSCCEESCSTTCEEECSCSSSCSSEEEEEEEESSCGGGSCEEEEEEECSCCCC
T ss_pred CCCEEEEE-Ee--cCCCceeEEEecC-cCceeECcCCCCceecCCCCCCCCCcEeeEEEEECCCCEEEEEEEeccccccc
Confidence 35655443 22 1223333456664 69999872 344322 2235544455443 2688888885431
Q ss_pred -------CCCcEEEEEeccCCcCCCCC
Q 020796 210 -------GIGRVCMSESCDGGLTWSYA 229 (321)
Q Consensus 210 -------~~~~~~~~~S~D~G~tWs~~ 229 (321)
+...+.+++|.|+|.+|++.
T Consensus 126 ~~~~~~~~~q~Q~lA~S~D~g~~w~K~ 152 (634)
T 3lig_A 126 WSIPYTRGSETQSLAVARDGGRRFDKL 152 (634)
T ss_dssp TTSCCCTTSEEEEEEEEEGGGTEEEEC
T ss_pred ccCcCCCCcEEEEEEEECCCCCEEEEC
Confidence 11347789999999999975
|
| >2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A | Back alignment and structure |
|---|
Probab=90.27 E-value=11 Score=34.62 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=96.7
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC-C-------------------CCCCCCCccE
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP-G-------------------ILGPSKNKPI 140 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~-~-------------------~~g~~~~~~~ 140 (321)
..+|.++.. +|+.|++.+ . ..+.+|+| ..+|+....+.+ . ..+...+.++
T Consensus 36 ~~DPsii~~-~g~YYl~~T---~-----~~i~~S~D-LvnW~~~g~~l~~~~~~~~~~~~~l~~~~~w~~~~~~WAP~vi 105 (470)
T 2x8s_A 36 VHDPSIIET-NGTFYVFGS---H-----LASAKSND-LMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQSDTLWAADVT 105 (470)
T ss_dssp CSSCEEEEE-TTEEEEECS---T-----TCEEEESS-SSBCEEEECSCSTTCTTSTTHHHHTHHHHHHHTCSSCCCCEEE
T ss_pred CCCCEEEEE-CCEEEEEEC---c-----CceEECCC-cccceeccccccccccccccccccccccccccCCCceECCeEE
Confidence 457888766 678776422 1 13678887 578986543211 0 0122233333
Q ss_pred EccCCeEEEeeecccC--CCCcEEEEEECCCCceeEEeeceecCC--------------CCcceeeeeEEEcCCCeEEEE
Q 020796 141 LLENGLLLCGSSVESW--NSWGSWMEVTVDAGRSWRKYGPIYIPN--------------ESLSVIQPVPFHTANRTLRVL 204 (321)
Q Consensus 141 ~~~~G~~~~~~~~~~~--~~~~~~~~~S~D~G~tW~~~~~~~~~~--------------~~~~~~~~~~~~~~~G~l~~~ 204 (321)
...+|+.++....... ....+.++.|+|---.|+....+...+ .....+.|.++...||+.+++
T Consensus 106 ~~~dGkyylyys~~~~~~~~~~IgvatSddp~GPw~~~g~~l~~~~~~~~~dg~~~~~~~~~~~IDp~vf~DdDG~~Yl~ 185 (470)
T 2x8s_A 106 QLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVAPHTFFDKDGKLWMV 185 (470)
T ss_dssp ECTTSCEEEEEEEECSSSCCEEEEEEEESSTTCCCEEEEEEEEECCSSBCTTSSBCCTTTSCCSCCCEEEECTTSCEEEE
T ss_pred EecCCEEEEEEEeccCCCCccEEEEEEeCCCCCCceeCCeeeccCcccccccccccccccCCCCCCCCEEEcCCCCEEEE
Confidence 4458987664322111 123567888876433698764221111 012467888888889999998
Q ss_pred EeecCCCCcEEEEEe-ccCCcCCCC---CccCCCCC---CCCceeEEE-cCCCcEEEEEeCC-----CCCeEEEEEEcCC
Q 020796 205 MRSFNGIGRVCMSES-CDGGLTWSY---AKPTQLLN---PNSGIDGVK-LKDGRLLLAYNTV-----SRGVLKVALSKDD 271 (321)
Q Consensus 205 ~r~~~~~~~~~~~~S-~D~G~tWs~---~~~~~~~~---~~~~~~~~~-~~~g~~~lv~~~~-----~r~~l~~~~S~D~ 271 (321)
+.... +.++++.- .|.|+.-.. ...+ ... ...+..+.. -.+|..+|.+... ....+.+++|++=
T Consensus 186 ~g~~~--~gI~~~eL~~d~~~~~~~~~~~~~i-~~g~~~~~EGP~i~~~K~~G~YYL~~S~g~~~~~~~y~v~~arS~s~ 262 (470)
T 2x8s_A 186 YGSYS--GGIFILEMNPKTGFPLPGQGYGKKL-LGGNHSRIEGPYVLYNPDTQYYYLYLSYGGLDATGGYNIRVARSKKP 262 (470)
T ss_dssp ECBST--TCEEEEEBCTTTSSBCTTCTTCEEE-ECCSSCSEEEEEEEEETTTTEEEEEEEESBSSTTSBCEEEEEEESST
T ss_pred eeecC--CcEEEEEECCccCcCcCCcccceEe-cCCCCCceeccEEEEEccCCEEEEEEEeCCCCCCCCceEEEEEECCC
Confidence 86532 45666553 444432210 0111 011 111233433 3578999887532 2356788888642
Q ss_pred CCCCC
Q 020796 272 GDSWH 276 (321)
Q Consensus 272 G~tW~ 276 (321)
---|.
T Consensus 263 ~GP~~ 267 (470)
T 2x8s_A 263 DGPYY 267 (470)
T ss_dssp TCCCB
T ss_pred CCCCC
Confidence 22466
|
| >1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* | Back alignment and structure |
|---|
Probab=89.07 E-value=1.8 Score=39.54 Aligned_cols=91 Identities=10% Similarity=0.029 Sum_probs=53.3
Q ss_pred eeeeeEEecCCC-----CC----CCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEE-----eCCC----CcCCcE
Q 020796 10 LVAEEFTFPANS-----AP----FKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQT-----FKDG----RWQSPI 71 (321)
Q Consensus 10 ~~~~~~~f~~~~-----~~----~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~-----s~~G----tWs~~~ 71 (321)
-.....||+.+. .+ ...+...+.+...+|+++++|.+....+.....|..+. +++| .|....
T Consensus 110 W~~~G~vfp~~~~~~~~~~~~~~~~g~WSGSAi~~~dG~i~LfYTg~~~~~~~~q~I~~a~~~l~~~~dgv~~~~~~~~~ 189 (447)
T 1oyg_A 110 WKNAGRVFKDSDKFDANDSILKDQTQEWSGSATFTSDGKIRLFYTDFSGKHYGKQTLTTAQVNVSASDSSLNINGVEDYK 189 (447)
T ss_dssp CEEEEESCCTTHHHHTTCTTGGGCCEEEEEEEEECTTSCEEEEEEEEEGGGTTEEEEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred ccCCCeecCCCccccccccccCCCCCEECCceEECcCCEEEEEEEeecCCCCCceEEEEEecceeecCCCcceecccCCC
Confidence 344566887741 12 24455677776678999999876432212233454444 4565 455433
Q ss_pred -EccCCC-------------------CCCCCCeEEEEeCCCcEEEEEEec
Q 020796 72 -IADEEP-------------------NVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 72 -~~~~~~-------------------~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
++.+++ ....++|.++.+ +|+.||++...
T Consensus 190 ~l~~~Dg~~Yq~~~q~~~~~~~~~~~~~~fRDP~Vf~d-~G~~ymvfgA~ 238 (447)
T 1oyg_A 190 SIFDGDGKTYQNVQQFIDEGNYSSGDNHTLRDPHYVED-KGHKYLVFEAN 238 (447)
T ss_dssp EEECCCSSSBCCHHHHHHHTGGGGTCCCCCEEEEEEEE-TTEEEEEEEEE
T ss_pred ceEcCCCccccccccccccccccCCCccccCCCeEEeE-CCEEEEEEeee
Confidence 333332 135677988877 68999888753
|
| >2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* | Back alignment and structure |
|---|
Probab=89.03 E-value=5.2 Score=37.54 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=53.1
Q ss_pred eeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCC--CCCcEEEEE-------EeCCC----CcCCcEE-ccCCC
Q 020796 12 AEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEG--APDVKIWLQ-------TFKDG----RWQSPII-ADEEP 77 (321)
Q Consensus 12 ~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g--~~~~~i~~s-------~s~~G----tWs~~~~-~~~~~ 77 (321)
....+|.++ .++..+...+.+...+|+++++|.+..... .....|..+ .+++| .|..... +.+++
T Consensus 181 ~~G~~~~~~-~~~~g~WSGSAi~~~DG~l~LFYTG~~~~~~~~~~Q~Ia~a~~~l~~~~s~dgv~~~kw~~~~~l~~~dg 259 (571)
T 2yfr_A 181 NAGPIFGLG-TPVIQQWSGSATLNKDGSIQLYYTKVDTSDNNTNHQKLASATVYLNLEKDQDKISIAHVDNDHIVFEGDG 259 (571)
T ss_dssp EEEETTCSC-CTTEEEEEEEEEECTTSCEEEEEEEEECTTTTCCEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEECCCS
T ss_pred CCCeEcCCC-CCCCceECCeeEECcCCEEEEEEeccccCCCCcccceEEEEEeeeeecccCCCcceecccCCCceecCCC
Confidence 445677775 345566677777667899999987632211 122233321 23454 4654443 33332
Q ss_pred -----------------CCCCCCeEEEEeCCCcEEEEEEec
Q 020796 78 -----------------NVPMWNPVLFKLPSNGLLLFYKIG 101 (321)
Q Consensus 78 -----------------~~~~~~p~l~~~~~G~l~l~~~~~ 101 (321)
....++|.++..++|+.||++...
T Consensus 260 ~~Yqt~~q~~~~~~~~~~~~FRDP~Vf~d~dG~~YMVfgA~ 300 (571)
T 2yfr_A 260 YHYQTYDQWKETNKGADNIAMRDAHVIDDDNGNRYLVFEAS 300 (571)
T ss_dssp SSBCCHHHHHHHCSSCCCCCCEEEEEEECTTCCEEEEEEEE
T ss_pred cccccccccccccccCCcccCcCCeEEEeCCCCEEEEEEec
Confidence 235778999887679999988753
|
| >3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=86.51 E-value=15 Score=31.62 Aligned_cols=181 Identities=10% Similarity=0.104 Sum_probs=87.3
Q ss_pred CccccceEEEecCCcEEEEEecCCCC----CCCCcEEEEEEeC--C---CCcCCcEEccCCCCCCCCCeEEEEeCCCcEE
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCE----GAPDVKIWLQTFK--D---GRWQSPIIADEEPNVPMWNPVLFKLPSNGLL 95 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~----g~~~~~i~~s~s~--~---GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~ 95 (321)
....+|.|... +|+.++.|...... +.....+.+..++ + +.|+.+..+........-+|.++.+.+|+.+
T Consensus 72 ~~~WAP~v~~~-~G~yylyys~~~~~~~~~~~~~~~~~~~~~~~~gP~~~~~~~~~~~~~~~~~~~IDp~vf~Ddd~~~~ 150 (330)
T 3k1u_A 72 NLIWAPEIHFI-NGAWYIYFAAAPDKNIEDDTFNHRMFVIQNENENPFTGNWVEKGRIKTAWESFSLDATIFEHNEKLYY 150 (330)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEESSSCCBTTBCCCEEEEEEECSSSTTSSCCEEEEECCCSSCSCEEEEEEEEETTEEEE
T ss_pred CCeECCEEEEE-CCeEEEEEEeccCCCCCCcccceeeeEEEeCCCCCccccccccccccCCCCCCccCceEEEECCccEE
Confidence 45678999876 58988877543221 1112223333332 2 3688776665433334457989888555444
Q ss_pred EEEEecccc-CCceeEEEEecCCCCCCCCCccCCC-CC----CC--CCCCccEEccCCeEEEeeecc-cCCCCcEEEEEE
Q 020796 96 LFYKIGQEV-QKWSGCMKRSYNKGVTWSEREQLPP-GI----LG--PSKNKPILLENGLLLCGSSVE-SWNSWGSWMEVT 166 (321)
Q Consensus 96 l~~~~~~~~-~~~~~~~~~S~D~G~TWs~~~~l~~-~~----~g--~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~S 166 (321)
+++...... +....++...++.-..-.++..+.. .. .+ ..+++-+...+|..++..... ......+.+++|
T Consensus 151 ~~~~~~~~~~~~~~i~i~~l~~~~~~~g~~~~i~~~~~~~e~~~~~~~EGp~i~k~~G~YYL~ys~~~~~~~y~~~~~~s 230 (330)
T 3k1u_A 151 VWAQQDINIKGHSNIYIAEMENPWTLKTKPVMLTKPELEWEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCIGMLTA 230 (330)
T ss_dssp EEEECCTTSSSSBEEEEEEEEETTEECSCCEEEECSCSGGGCSSSCBEEEEEEEEETTEEEEEEEESCSSTTCEEEEEEE
T ss_pred EEeecCCCcCCCceEEEEECCCCccccCCcEEecCCCccccccCCceeeCCEEEEECCEEEEEEEeCCCCCCceEEEEEE
Confidence 443321111 2223445554443222233333322 11 11 123444455678766543221 122456677887
Q ss_pred CCC-----CceeEEee-ceecCCC---CcceeeeeEEEcCCCe-EEEEEe
Q 020796 167 VDA-----GRSWRKYG-PIYIPNE---SLSVIQPVPFHTANRT-LRVLMR 206 (321)
Q Consensus 167 ~D~-----G~tW~~~~-~~~~~~~---~~~~~~~~~~~~~~G~-l~~~~r 206 (321)
+.- ...|.... ++..... ..+.-+.+++..++|. .++++.
T Consensus 231 ~~~~gP~~~~~~~~~~~pi~~~~~~~~~~g~GH~s~v~~~dG~~~~~~yH 280 (330)
T 3k1u_A 231 EENSNLLDKNSWTKSQTPVFKTSMENHQYGPGHNSFTVSEDGKHDVIVYH 280 (330)
T ss_dssp ETTSCTTSGGGCEECSSCSBCCBTTTTBEEEEEEEEEECTTSCSEEEEEE
T ss_pred CCCCCCCCCccccccCCCEEEcCCCCceeeCCcCeEEECCCCCEEEEEEc
Confidence 642 24576542 2221111 1223356788888874 566653
|
| >1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} | Back alignment and structure |
|---|
Probab=85.36 E-value=13 Score=34.13 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=27.4
Q ss_pred CeEEEEEEc-CCCCCCCcceeecccC--CCceeceEEEEccCCeEEEEEEe
Q 020796 261 GVLKVALSK-DDGDSWHDALTLEENL--AMEFSYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 261 ~~l~~~~S~-D~G~tW~~~~~l~~~~--~~~~~yp~~~~~~dg~l~v~y~~ 308 (321)
..+.++++. ++...|.....|-... ....--|.++.. +|.-||.+..
T Consensus 308 g~IGLa~~~s~Dl~~We~~~PL~~a~~v~deiErP~V~~~-~GkyYLFtSs 357 (493)
T 1w18_A 308 ANIGLAIATDSTLSKWKFLSPLISANCVNDQTERPQVYLH-NGKYYIFTIS 357 (493)
T ss_dssp EEEEEEEESSTTSCCEEEEEEEEECTTTBSCCEEEEEEEE-TTEEEEEEEE
T ss_pred ceEEEEEeCCCCCccceecCccccCCCCCCcEECCeEEEE-CCEEEEEEEc
Confidence 356666665 4567797655443221 123455888874 5776766654
|
| >1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} | Back alignment and structure |
|---|
Probab=84.81 E-value=4.2 Score=37.41 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=56.6
Q ss_pred eeeeeeeeEEecCCCC--------CCCccccceEEEec--CCcEEEEEecCCCCC--C----------------------
Q 020796 7 IKGLVAEEFTFPANSA--------PFKSCHASTIVEVD--KGHFLVAYFGGSCEG--A---------------------- 52 (321)
Q Consensus 7 ~~~~~~~~~~f~~~~~--------~~~~~~~p~l~~~~--~g~l~~~~~~~~~~g--~---------------------- 52 (321)
|....+...||++... .....|.|.++..+ +|+.|++|-+..... .
T Consensus 218 ~~~w~k~~~l~~~DG~~Yqt~~q~~~~~fRDP~vf~D~~~dG~~YmvFeant~~~~g~~~~~~~~~~y~~~~~~~~~~~~ 297 (493)
T 1w18_A 218 FTGFTAHTPLLQPDGVLYQNGAQNEFFNFRDPFTFEDPKHPGVNYMVFEGNTAGQRGVANCTEADLGFRPNDPNAETLQE 297 (493)
T ss_dssp EEEEEEEEEEECCCSSSBCCTTTCTTCCCEEEEEEECTTSTTCEEEEEEEEBSSCTTCCCCCHHHHCCCTTCTTCCCHHH
T ss_pred ccccccCCceeecCccccccccccCCccccCCEEEecCCCCCCEEEEEEeccCCCCcccccccccccccCCccccchhhh
Confidence 5566677888887422 24577889999888 389998875532211 0
Q ss_pred --------CCcEE--EEEEeCCC-CcCCcEEccCCCCC--CCCCeEEEEeCCCcEEEEEEe
Q 020796 53 --------PDVKI--WLQTFKDG-RWQSPIIADEEPNV--PMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 53 --------~~~~i--~~s~s~~G-tWs~~~~~~~~~~~--~~~~p~l~~~~~G~l~l~~~~ 100 (321)
....| ....+++. .|+-...+...+.. ....|.++.. +|+-|||+..
T Consensus 298 ~~~~~a~~~~g~IGLa~~~s~Dl~~We~~~PL~~a~~v~deiErP~V~~~-~GkyYLFtSs 357 (493)
T 1w18_A 298 VLDSGAYYQKANIGLAIATDSTLSKWKFLSPLISANCVNDQTERPQVYLH-NGKYYIFTIS 357 (493)
T ss_dssp HHHTTGGGCCEEEEEEEESSTTSCCEEEEEEEEECTTTBSCCEEEEEEEE-TTEEEEEEEE
T ss_pred cccccchhccceEEEEEeCCCCCccceecCccccCCCCCCcEECCeEEEE-CCEEEEEEEc
Confidence 12244 44444455 79864444222322 3556888765 8998888764
|
| >3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=81.78 E-value=24 Score=30.26 Aligned_cols=220 Identities=13% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccC---CCCCCCC----CCCccEEccCCeEEEeeecc
Q 020796 82 WNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQL---PPGILGP----SKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 82 ~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l---~~~~~g~----~~~~~~~~~~G~~~~~~~~~ 154 (321)
.+|.++.. +++.|++.+..... -...+.+|+| =..|+....+ ....... +-.+-+...+|+.++.....
T Consensus 18 aDP~ii~~-~d~yY~~~st~~~~--~g~~i~~S~D-L~~w~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~G~yylyys~~ 93 (330)
T 3k1u_A 18 ADPMIYKH-NDGYYYFTASVPEY--DRIEVRKAKT-IEGLRNAEPVDVWRRHESGEMSNLIWAPEIHFINGAWYIYFAAA 93 (330)
T ss_dssp EEEEEEEC-TTSCEEEEEECTTC--CEEEEEEESS-TGGGTTSCCEEEEECCSSSTTSEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEE-CCEEEEEEeccCCC--CCEEEEEcCC-cCCccCCcceeecccCCCCccCCCeECCEEEEECCeEEEEEEec
Confidence 56888765 56788776532111 1234778876 3557543221 1111000 11122344588876542211
Q ss_pred cC----C---CCcEEEEEECCCC---ceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecC---CCCcEEEEEecc
Q 020796 155 SW----N---SWGSWMEVTVDAG---RSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFN---GIGRVCMSESCD 221 (321)
Q Consensus 155 ~~----~---~~~~~~~~S~D~G---~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D 221 (321)
.. . .....+..++..| ..|+....+.. ......+.|.++..++|+.++++.... ....+++++-+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~gP~~~~~~~~~~~~~-~~~~~~IDp~vf~Ddd~~~~~~~~~~~~~~~~~~i~i~~l~~ 172 (330)
T 3k1u_A 94 PDKNIEDDTFNHRMFVIQNENENPFTGNWVEKGRIKT-AWESFSLDATIFEHNEKLYYVWAQQDINIKGHSNIYIAEMEN 172 (330)
T ss_dssp SSSCCBTTBCCCEEEEEEECSSSTTSSCCEEEEECCC-SSCSCEEEEEEEEETTEEEEEEEECCTTSSSSBEEEEEEEEE
T ss_pred cCCCCCCcccceeeeEEEeCCCCCccccccccccccC-CCCCCccCceEEEECCccEEEEeecCCCcCCCceEEEEECCC
Confidence 10 0 1122333333322 35887653322 222346788888876666666553321 223576666544
Q ss_pred CCcCCCCCccCCCCC-----C----CCceeEEEcCCCcEEEEEeCC---CCCeEEEEEEcCC-C----CCCCc---ceee
Q 020796 222 GGLTWSYAKPTQLLN-----P----NSGIDGVKLKDGRLLLAYNTV---SRGVLKVALSKDD-G----DSWHD---ALTL 281 (321)
Q Consensus 222 ~G~tWs~~~~~~~~~-----~----~~~~~~~~~~~g~~~lv~~~~---~r~~l~~~~S~D~-G----~tW~~---~~~l 281 (321)
.-..-..+..+..+. . ..+..+.. .+|..+|+|... ....+.+++|..- | ..|.. +.+.
T Consensus 173 ~~~~~g~~~~i~~~~~~~e~~~~~~~EGp~i~k-~~G~YYL~ys~~~~~~~y~~~~~~s~~~~gP~~~~~~~~~~~pi~~ 251 (330)
T 3k1u_A 173 PWTLKTKPVMLTKPELEWEIKGFWVNEGPAVLK-KNGKIFITYSASATDVNYCIGMLTAEENSNLLDKNSWTKSQTPVFK 251 (330)
T ss_dssp TTEECSCCEEEECSCSGGGCSSSCBEEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEEETTSCTTSGGGCEECSSCSBC
T ss_pred CccccCCcEEecCCCccccccCCceeeCCEEEE-ECCEEEEEEEeCCCCCCceEEEEEECCCCCCCCCccccccCCCEEE
Confidence 322112222211111 0 01234444 579999998532 3346677777631 1 22432 1122
Q ss_pred cccCC--CceeceEEEEccCCe-EEEEEE
Q 020796 282 EENLA--MEFSYPAVIQASDGS-VHITYT 307 (321)
Q Consensus 282 ~~~~~--~~~~yp~~~~~~dg~-l~v~y~ 307 (321)
..... .+.++..+++.+||. .+++|-
T Consensus 252 ~~~~~~~~g~GH~s~v~~~dG~~~~~~yH 280 (330)
T 3k1u_A 252 TSMENHQYGPGHNSFTVSEDGKHDVIVYH 280 (330)
T ss_dssp CBTTTTBEEEEEEEEEECTTSCSEEEEEE
T ss_pred cCCCCceeeCCcCeEEECCCCCEEEEEEc
Confidence 21111 134678888888874 577774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 321 | ||||
| d1w0pa3 | 364 | b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sia | 1e-20 | |
| d1w8oa3 | 356 | b.68.1.1 (A:47-402) Micromonospora sialidase, N-te | 6e-17 | |
| d2slia2 | 483 | b.68.1.1 (A:277-759) Leech intramolecular trans-si | 2e-16 | |
| d1so7a_ | 374 | b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapi | 9e-12 | |
| d3sila_ | 379 | b.68.1.1 (A:) Salmonella sialidase {Salmonella typ | 2e-06 | |
| d3sila_ | 379 | b.68.1.1 (A:) Salmonella sialidase {Salmonella typ | 3e-05 |
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} Length = 364 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Score = 88.6 bits (218), Expect = 1e-20
Identities = 42/302 (13%), Positives = 79/302 (26%), Gaps = 53/302 (17%)
Query: 67 WQSPII----ADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSG------------C 110
W + + + +P PS+ +L
Sbjct: 56 WDTELNLTEQINVSDEFDFSDPRPIYDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIF 115
Query: 111 MKRSYNKGVTWSEREQLPP---GILGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV 167
W P GI + +NG L+ + V +
Sbjct: 116 YSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAIVLDRFFLNVMSIYSD 175
Query: 168 DAGRSWRKYGPIYIPNE--------SLSVIQPVPFHTANRTLRVLMRSFNGI-------G 212
D G +W+ + IP +L + N L + R
Sbjct: 176 DGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYS 235
Query: 213 RVCMSESCDGGLTWSYAKPT--------QLLNPNSGIDGVKLKDGRLLLAYNTV------ 258
S DGG+TWS + ++ I + DG L +
Sbjct: 236 PRQQFLSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAG 295
Query: 259 --SRGVLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHV 316
R L + S D+G +W + L +Y + Q + + + + ++ +
Sbjct: 296 TNGRQNLGLWFSFDEGVTWKGPIQLVNG---ASAYSDIYQLDSENAIVIVETDNSNMRIL 352
Query: 317 VL 318
+
Sbjct: 353 RM 354
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Length = 356 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Score = 78.3 bits (191), Expect = 6e-17
Identities = 45/328 (13%), Positives = 87/328 (26%), Gaps = 46/328 (14%)
Query: 31 TIVEVDKGHFLVAYFG--GSCEGAPDVKIWLQTFKDG--RWQSPII----ADEEPNVPMW 82
+ G L +Y G I + DG W + P
Sbjct: 25 ALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKGFS 84
Query: 83 NPVLFKLPSNGLLLFYKIGQEVQK---------------WSGCMKRSYNKGVTWSEREQL 127
+P G + + + + Q + S + G+TWS R
Sbjct: 85 DPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTIT 144
Query: 128 PPGI-------LGPSKNKPILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180
+ + I L G + + V
Sbjct: 145 ADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRA 204
Query: 181 IPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNS- 239
+ + + ++ + + R G ++ S DGG ++ + L +
Sbjct: 205 GEAVGVGMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHSYGPVTIDRDLPDPTN 264
Query: 240 -------GIDGVKLKDGRLLLAY----NTVSRGVLKVALSKDDGDSWHDALTLEENLAME 288
D +L + + SR + +S DDG +W + +
Sbjct: 265 NASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG---S 321
Query: 289 FSYPAVIQASDGSVHITYTYNRTQIKHV 316
SY + DG+ + Y T I++
Sbjct: 322 MSYSTLTALPDGTYGLLY-EPGTGIRYA 348
|
| >d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Length = 483 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Leech intramolecular trans-sialidase, C-terminal domain species: North american leech (Macrobdella decora) [TaxId: 6405]
Score = 77.4 bits (189), Expect = 2e-16
Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 35/229 (15%)
Query: 107 WSGCMKRSYNKGVTWSEREQLPP------GILGPSKNKPILLEN----GLLLCGSSVESW 156
M+ S ++G +WS+ + + L + G LL + S
Sbjct: 230 NYLAMRYSDDEGASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVP--LYSK 287
Query: 157 NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCM 216
+S + D G +W + + + + +L+ +R+ + +
Sbjct: 288 SSAELGFMYSDDHGDNWTYVEADNLTGGA--TAEAQIVEMPDGSLKTYLRTGSN--CIAE 343
Query: 217 SESCDGGLTWSYAKPTQLLNP------NSGIDGVKLKDGRLLLAY------NTVSRGVLK 264
S DGG TWS P Q ++ S I+ + DG+ + N G +
Sbjct: 344 VTSIDGGETWSDRVPLQGISTTSYGTQLSVINYSQPIDGKPAIILSSPNATNGRKNGKIW 403
Query: 265 VALSKDDGDSWHDALTLE-------ENLAMEFSYPAVIQASDGSVHITY 306
+ L D G++ D ++E + M +SY + + DG V + Y
Sbjct: 404 IGLVNDTGNTGIDKYSVEWKYSYAVDTPQMGYSYSCLAELPDGQVGLLY 452
|
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} Length = 374 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.7 bits (151), Expect = 9e-12
Identities = 40/347 (11%), Positives = 96/347 (27%), Gaps = 67/347 (19%)
Query: 32 IVEVDKGHFLVAYFGG---SCEGAPDVKIWLQTFKDGR-----WQSPII---ADEEPNVP 80
++ + L+A+ + ++ + + D WQ+ + A + +
Sbjct: 22 LLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHRS 81
Query: 81 MWNPVLFKLPSNGLLLFY-----------KIGQEVQKWSGCMKRSYNKGVTWSEREQLPP 129
M L+ + L LF+ ++ C S + G TWS L
Sbjct: 82 MNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTD 141
Query: 130 GILGPSKNKPILL------------ENGLLLC------GSSVESWNSWGSWMEVTVDAGR 171
+GP+ + L+ ++ ++ D GR
Sbjct: 142 AAIGPAYREWSTFAVGPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGR 201
Query: 172 SWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP 231
+W + + V + V + + + + ++S + GL + ++
Sbjct: 202 TWARGHFVAQDTLECQVAE----VETGEQRVVTLNARSHLRARVQAQSTNDGLDFQESQL 257
Query: 232 -TQLLNPNSG-----------IDGVKLKDGRLLLAYNTVS-----RGVLKVALSKDDGDS 274
+L+ P + LL + + ++
Sbjct: 258 VKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEA 317
Query: 275 WHDALTLEENLAMEFSYPAVIQASDGS---VHITYTYNRTQIKHVVL 318
W + + L + +Y + G Y + +V
Sbjct: 318 WSEPVLLAKG---SCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVF 361
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} Length = 379 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 37/296 (12%), Positives = 78/296 (26%), Gaps = 54/296 (18%)
Query: 31 TIVEVDKGHFLVAYFG--GSCEGAPDVKIWLQTFKDG--RWQSPII-----ADEEPNVPM 81
+ KG +V + + DG W I + + + M
Sbjct: 37 AMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSKLSRVM 96
Query: 82 WNPVLFKLPSNGLLLF---------------YKIGQEVQKWSGCMKRSYNKGVTWSEREQ 126
+ + Y+ W + +S + GVT+S+ E
Sbjct: 97 DPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVET 156
Query: 127 LPPGI---------LGPSKNKPILLENGLLL----CGSSVESWNSWGSWMEVTVDAGRSW 173
I + + L +G L+ + + + D
Sbjct: 157 NIHDIVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWS 216
Query: 174 RKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT- 232
G ++I+ L+ + G E+ D G TW+ P
Sbjct: 217 LPSGYCEGFGSENNIIEFNAS---------LVNNIRNSGLRRSFETKDFGKTWTEFPPMD 267
Query: 233 ---QLLNPNSGIDGVKLKDG-RLLLAYNTVS---RGVLKVALSKDDGDSWHDALTL 281
N + + G +L+ A+++ + +S + + + L
Sbjct: 268 KKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGEVKL 323
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} Length = 379 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 28/263 (10%), Positives = 79/263 (30%), Gaps = 43/263 (16%)
Query: 84 PVLFKLPSNGLLLFYKIGQEVQKWSGC--------MKRSYNKGVTWSEREQLPPGILGPS 135
P + +++F + + + RS + G TW+++ + +
Sbjct: 36 PAMCTTSKGTIVVFA----DARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSK 91
Query: 136 KNK---PILLENG-------LLLCGSSVESWNSWGSWMEVTVDAGRSWRKY--------- 176
++ P + L++ G + +WG++ + D Y
Sbjct: 92 LSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTF 151
Query: 177 -GPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWS----YAKP 231
++ ++ + + + + V M + + + Y+
Sbjct: 152 SKVETNIHDIVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTD 211
Query: 232 TQLLNPNSGIDGVKLKDGRL-----LLAYNTVSRGVLKVALSKDDGDSWHDALTLEE--N 284
+ SG + + L N + G+ + +KD G +W + +++ +
Sbjct: 212 GITWSLPSGYCEGFGSENNIIEFNASLVNNIRNSGLRRSFETKDFGKTWTEFPPMDKKVD 271
Query: 285 LAMEFSYPAVIQASDGSVHITYT 307
+ I G+ +
Sbjct: 272 NRNHGVQGSTITIPSGNKLVAAH 294
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 321 | |||
| d1so7a_ | 374 | Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2slia2 | 483 | Leech intramolecular trans-sialidase, C-terminal d | 100.0 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 99.97 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 99.96 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 99.96 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 99.96 | |
| d2slia2 | 483 | Leech intramolecular trans-sialidase, C-terminal d | 99.64 | |
| d1so7a_ | 374 | Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 99.51 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 99.51 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 99.5 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 99.44 | |
| d2ebsa2 | 356 | Oligoxyloglucan reducing end-specific cellobiohydr | 99.25 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 99.0 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 98.95 | |
| d2ebsa2 | 356 | Oligoxyloglucan reducing end-specific cellobiohydr | 98.89 | |
| d1vkda_ | 327 | Hypothetical protein TM1225 {Thermotoga maritima [ | 97.92 | |
| d1uypa2 | 294 | Beta-fructosidase (invertase), N-terminal domain { | 97.78 | |
| d1vkda_ | 327 | Hypothetical protein TM1225 {Thermotoga maritima [ | 97.54 | |
| d1uv4a1 | 291 | Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 | 97.01 | |
| d1v0ea1 | 516 | Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 | 96.85 | |
| d2exha2 | 322 | Beta-D-xylosidase N-terminal domain {Geobacillus s | 96.58 | |
| d1yrza2 | 317 | Beta-D-xylosidase N-terminal domain {Bacillus halo | 96.38 | |
| d1uv4a1 | 291 | Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 | 96.06 | |
| d1y4wa2 | 353 | Exo-inulinase {Aspergillus awamori [TaxId: 105351] | 95.47 | |
| d1uypa2 | 294 | Beta-fructosidase (invertase), N-terminal domain { | 95.17 | |
| d2exha2 | 322 | Beta-D-xylosidase N-terminal domain {Geobacillus s | 94.71 | |
| d1y7ba2 | 321 | Beta-D-xylosidase N-terminal domain {Clostridium a | 94.55 | |
| d1y7ba2 | 321 | Beta-D-xylosidase N-terminal domain {Clostridium a | 94.04 | |
| d1yrza2 | 317 | Beta-D-xylosidase N-terminal domain {Bacillus halo | 92.6 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.7 | |
| d1wl7a1 | 312 | Arabinanase-TS {Bacillus thermodenitrificans [TaxI | 90.31 | |
| d1y4wa2 | 353 | Exo-inulinase {Aspergillus awamori [TaxId: 105351] | 89.47 | |
| d2b4wa1 | 310 | Hypothetical protein LmjF10.1260 {Leishmania major | 88.34 | |
| d2b4wa1 | 310 | Hypothetical protein LmjF10.1260 {Leishmania major | 87.46 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 87.18 | |
| d1oyga_ | 440 | Levansucrase {Bacillus subtilis [TaxId: 1423]} | 86.01 | |
| d1wl7a1 | 312 | Arabinanase-TS {Bacillus thermodenitrificans [TaxI | 82.06 |
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-32 Score=243.87 Aligned_cols=299 Identities=15% Similarity=0.204 Sum_probs=199.4
Q ss_pred eeeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCC--CCCcEEEEEEeCC-C-C----cCCcEEccCC--CCC
Q 020796 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEG--APDVKIWLQTFKD-G-R----WQSPIIADEE--PNV 79 (321)
Q Consensus 10 ~~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g--~~~~~i~~s~s~~-G-t----Ws~~~~~~~~--~~~ 79 (321)
+++|+.||+++ +..+|+|+|+.+++|.++++|++++..+ .+...|+++||+| | | |++++.+... +..
T Consensus 3 ~~~~~~~f~~g---~~~yRiP~lv~~~~g~~l~A~a~~r~~~~d~~~~~iv~~rS~D~G~T~~~~Ws~~~~v~~~~~~~~ 79 (374)
T d1so7a_ 3 VLQKESVFQSG---AHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGH 79 (374)
T ss_dssp CSEEEEEEECT---TCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTE
T ss_pred ccceeEEeECC---cccEeeCEEEEEcCCCEEEEEEeEEcCCccCCCCeEEEEEecCCCcccccccCCCEEeECCCCCCc
Confidence 57899999996 5778999999999999999998776433 2234577888875 5 6 9999988653 445
Q ss_pred CCCCeEEEEe-CCCcEEEEEEecccc-----------CCceeEEEEecCCCCCCCCCccCCCCCCCC----------CCC
Q 020796 80 PMWNPVLFKL-PSNGLLLFYKIGQEV-----------QKWSGCMKRSYNKGVTWSEREQLPPGILGP----------SKN 137 (321)
Q Consensus 80 ~~~~p~l~~~-~~G~l~l~~~~~~~~-----------~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~----------~~~ 137 (321)
...+|+++.+ ++|+|+++|...... .....++.+|+|+|+||++|..+.....+. ...
T Consensus 80 ~~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~~~~ 159 (374)
T d1so7a_ 80 RSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPG 159 (374)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSS
T ss_pred eeeeeeEEEECCCCEEEEEEEeecCCCcccccccCCCCcccEEEEeCCCCcccccCceeccccccccccCCceeeeeecc
Confidence 5677887766 579999998743211 112346789999999999998775321100 011
Q ss_pred ccE--EccCCeEEEeeeccc----CC--CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeec-
Q 020796 138 KPI--LLENGLLLCGSSVES----WN--SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSF- 208 (321)
Q Consensus 138 ~~~--~~~~G~~~~~~~~~~----~~--~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~- 208 (321)
..+ ...+|+++++.+... .. .....+++|+|+|+||+....+ ..++.++.++++.+|+++++++..
T Consensus 160 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~-----~~~~~e~~~~e~~~~~~~~~~~~~~ 234 (374)
T d1so7a_ 160 HCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFV-----AQDTLECQVAEVETGEQRVVTLNAR 234 (374)
T ss_dssp CCEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCC-----SBSEEEEEEEEEEC--CEEEEEEEE
T ss_pred cceeeeecCCcEEeeeEeeccCcccCCCCceEEEEEecCCcccccccccc-----CCCCccceEEEecccccceeEEecc
Confidence 122 234688876654321 11 1245788999999999876533 235678889988898877766533
Q ss_pred CCCCcEEEEEeccCCcCCCCCccCC-CCCCC---CceeEEE--------cCCCcEEEEEeCC---CCCe--EEEEEEcCC
Q 020796 209 NGIGRVCMSESCDGGLTWSYAKPTQ-LLNPN---SGIDGVK--------LKDGRLLLAYNTV---SRGV--LKVALSKDD 271 (321)
Q Consensus 209 ~~~~~~~~~~S~D~G~tWs~~~~~~-~~~~~---~~~~~~~--------~~~g~~~lv~~~~---~r~~--l~~~~S~D~ 271 (321)
...+.+++++|.|+|+||+++.... ++.+. ....++. ..++.+++..++. .|.. +.+++|.|+
T Consensus 235 ~~~~~r~~~~S~D~G~tW~~~~~~~~l~~~~~~~~~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~D~ 314 (374)
T d1so7a_ 235 SHLRARVQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPA 314 (374)
T ss_dssp ESSSEEEEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESSTTC
T ss_pred cCCCcEEEEEecCCCcccccccccccccCCCCCCccceEEEecccccccccCCceEEEeCCCCCCCCCceEEEEEEECCC
Confidence 2235678899999999999976421 22111 1111221 1223344444432 4544 455568999
Q ss_pred CCCCCcceeecccCCCceeceEEEEccCC-----eEEEEEEeCC-CeeEEEEeC
Q 020796 272 GDSWHDALTLEENLAMEFSYPAVIQASDG-----SVHITYTYNR-TQIKHVVLL 319 (321)
Q Consensus 272 G~tW~~~~~l~~~~~~~~~yp~~~~~~dg-----~l~v~y~~~~-~~i~~~~~~ 319 (321)
|+||+.+..|.++ .++|++|++++|| .|+|+|+.+. +.|++.+|+
T Consensus 315 G~tW~~~~~i~~g---~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f~~~~ 365 (374)
T d1so7a_ 315 PEAWSEPVLLAKG---SCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFT 365 (374)
T ss_dssp GGGCCCCEEEEEE---EEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEE
T ss_pred CeecCCceEeCCC---CCcCchheEcCCCCCCceEEEEEEecCCCceEEEEEEE
Confidence 9999999999865 4799999998887 4899999965 799999986
|
| >d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Leech intramolecular trans-sialidase, C-terminal domain species: North american leech (Macrobdella decora) [TaxId: 6405]
Probab=100.00 E-value=1.5e-30 Score=243.43 Aligned_cols=300 Identities=18% Similarity=0.256 Sum_probs=200.4
Q ss_pred eEEecCCC-CCCCccccceEEEecCCcEEEEEecCCC-CC--CCCcEEEEEEeCC-C-CcCCcEEccCCCC---------
Q 020796 14 EFTFPANS-APFKSCHASTIVEVDKGHFLVAYFGGSC-EG--APDVKIWLQTFKD-G-RWQSPIIADEEPN--------- 78 (321)
Q Consensus 14 ~~~f~~~~-~~~~~~~~p~l~~~~~g~l~~~~~~~~~-~g--~~~~~i~~s~s~~-G-tWs~~~~~~~~~~--------- 78 (321)
+.||.+++ .+.+++|+|+|+.+++|+|+|++-+... .+ .+++.|.++||+| | ||+++..+...+.
T Consensus 2 ~~~~~~~~~~~~~~yRIP~lv~~~~G~lla~~d~R~~~~~d~~~~idi~~~RStDgGkTWs~~~~i~~~~~~~~~~~~~~ 81 (483)
T d2slia2 2 ENIFYAGDVTESNYFRIPSLLTLSTGTVISAADARYGGTHDSKSKINIAFAKSTDGGNTWSEPTLPLKFDDYIAKNIDWP 81 (483)
T ss_dssp BCSSCTTSTTCCSEEEEEEEEECTTSCEEEEEEEESSTTCCSSSCEEEEEEEESSTTSSCCCCEEEECCCSBCCCCCCCC
T ss_pred CcceECCCCCCCccEeeeEEEEeCCCCEEEEEecccCCCCccCCCeeEEEEEecCCCCCCCCCCccccCccccccccccc
Confidence 45788874 6889999999999999999987533211 11 2457789999987 6 9999886543211
Q ss_pred -------------CCCCCeEEEEe-CCCcEEEEEEecccc----------------------------------------
Q 020796 79 -------------VPMWNPVLFKL-PSNGLLLFYKIGQEV---------------------------------------- 104 (321)
Q Consensus 79 -------------~~~~~p~l~~~-~~G~l~l~~~~~~~~---------------------------------------- 104 (321)
....+|.++.+ ++|++++++......
T Consensus 82 ~~~~~~~~~~~~~~~~~d~~~~~d~~tG~i~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 161 (483)
T d2slia2 82 RDSVGKNVQIQGSASYIDPVLLEDKLTKRIFLFADLMPAGIGSSNASVGSGFKEVNGKKYLKLRWHKDAGRAYDYTIREK 161 (483)
T ss_dssp CSTTGGGCCCSSCCEEEEEEEEEETTTTEEEEEEEEECTTCCGGGCCSSCSEEEETTEEEEEEEETTSCTTCCCEEECGG
T ss_pred ccccccccccCCcceeccCcEEEECCCCeEEEEEEeccccccccccccccceEeeCCcccccceeecCCCcccceeeccC
Confidence 12234666665 468898875421000
Q ss_pred ------------------------------------------------------------------CCceeEEEEecCCC
Q 020796 105 ------------------------------------------------------------------QKWSGCMKRSYNKG 118 (321)
Q Consensus 105 ------------------------------------------------------------------~~~~~~~~~S~D~G 118 (321)
......+.+|+|+|
T Consensus 162 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~S~D~G 241 (483)
T d2slia2 162 GVIYNDATNQPTEFRVDGEYNLYQHDTNLTCKQYDYNFSGNNLIESKTDVDVNMNIFYKNSVFKAFPTNYLAMRYSDDEG 241 (483)
T ss_dssp GEEEETTTTEEEEEEECTTCBEEETTEECEEEEEEEEEETTEEEEEEEEEEEECBTTSTTCSEEECSSCEEEEEEESSTT
T ss_pred ceeecccCCCcceeeeecccceeccCCcceeecccccccCccccccccccccccceecccccccccccceEEEEEecCcc
Confidence 00012367999999
Q ss_pred CCCCCCccCCCC---CCC---CCCCccEEcc----CCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcce
Q 020796 119 VTWSEREQLPPG---ILG---PSKNKPILLE----NGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSV 188 (321)
Q Consensus 119 ~TWs~~~~l~~~---~~g---~~~~~~~~~~----~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~ 188 (321)
+||+++..+... ... ......+++. +|+++++.+.. ......+++|+|+|+||+...+...+ ....
T Consensus 242 ~TWs~~~~~~~~~~~~~~~~~~gp~~gi~l~~~~~~grlv~~~~~~--~~~~~~~~~SdD~G~tW~~~~~~~~~--~~~~ 317 (483)
T d2slia2 242 ASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSK--SSAELGFMYSDDHGDNWTYVEADNLT--GGAT 317 (483)
T ss_dssp SSCCCCEECGGGCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEE--SSCSEEEEEESSTTSSCEEEECCCCC--SCCC
T ss_pred cccccccccccccCCcceeEeccccceeEeecCCcCceEEEEEEec--CCceeEEEEecCCcceeEeccccCCC--CCCc
Confidence 999988654321 100 0112235554 48888887653 23456788999999999987644322 2245
Q ss_pred eeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC---CCCCCCCceeEE---EcCCCcEEEEEe-C---C
Q 020796 189 IQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT---QLLNPNSGIDGV---KLKDGRLLLAYN-T---V 258 (321)
Q Consensus 189 ~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~---~~~~~~~~~~~~---~~~~g~~~lv~~-~---~ 258 (321)
.|+.++++.+|+|++..|... +..++++|.|+|+||+++.+. ..+.+.....++ ...+|+.+|++. + .
T Consensus 318 ~e~~~~e~~~g~l~~~~R~~~--~~~~~~~S~DgG~tW~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~s~p~~~~ 395 (483)
T d2slia2 318 AEAQIVEMPDGSLKTYLRTGS--NCIAEVTSIDGGETWSDRVPLQGISTTSYGTQLSVINYSQPIDGKPAIILSSPNATN 395 (483)
T ss_dssp CCEEEEECTTSCEEEEECCSS--SSCEEEEESSTTSSCCCCEECTTCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCSS
T ss_pred eEEEEEEccCceEEEEeccCC--CcEEEEEEcCCCcccCcCcccccccCCCCCcceeeEEcccCCCCCeEEEEeCCCCCC
Confidence 688999999999999998764 456778999999999987642 223332222222 334677777763 2 2
Q ss_pred CC--CeEEEEEEcCCCCCCCcceeec-------ccCCCceeceEEEEccCCeEEEEEEeC----------CCeeEEEEeC
Q 020796 259 SR--GVLKVALSKDDGDSWHDALTLE-------ENLAMEFSYPAVIQASDGSVHITYTYN----------RTQIKHVVLL 319 (321)
Q Consensus 259 ~r--~~l~~~~S~D~G~tW~~~~~l~-------~~~~~~~~yp~~~~~~dg~l~v~y~~~----------~~~i~~~~~~ 319 (321)
.| ..|.+++|.|+|+||.....+. ......++|++|++++||.|+|+||.+ ++.|++.+|.
T Consensus 396 ~r~~~~l~~~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~Ys~l~~~~dg~~~~~yE~~~~~~~~~~~~~~~i~~~~~~ 475 (483)
T d2slia2 396 GRKNGKIWIGLVNDTGNTGIDKYSVEWKYSYAVDTPQMGYSYSCLAELPDGQVGLLYEKYDSWSRNELHLKDILKFEKYS 475 (483)
T ss_dssp SSBCEEEEEEEEEECSCCGGGSEEEEEEEEEESSCTTSBCCCEEEEECSSSCEEEEEECSCSSCTTSCSCSSCEEEEEEC
T ss_pred CcccceEEEEEEcCCCcCCCCcceeeccccceeccCCCCCcccceEEeCCCeEEEEEECCCCcccccccccceEEEEEEe
Confidence 34 4567778999999999877664 112345789999999999999999874 2468888885
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=99.97 E-value=1.6e-29 Score=225.62 Aligned_cols=301 Identities=18% Similarity=0.250 Sum_probs=203.4
Q ss_pred eeeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCC--CCCCCCcEEEEEEeCC-C-CcCCcEEccCCCC----CCC
Q 020796 10 LVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGS--CEGAPDVKIWLQTFKD-G-RWQSPIIADEEPN----VPM 81 (321)
Q Consensus 10 ~~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~--~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~----~~~ 81 (321)
.+-++.||.++...+..+|+|+|+.++||+|+|+|.+.. ....+...|.++||+| | ||++++.+..... ...
T Consensus 4 ~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~~~~ 83 (356)
T d1w8oa3 4 LYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKGF 83 (356)
T ss_dssp CEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSCBEE
T ss_pred ccceeeccccCcCCcEeeEeCEEEEECCCCEEEEEeeeeCCCCCCCCceEEEEEccCCCCCCCCCEEeecCCCCCccccc
Confidence 355778888988889999999999999999999985522 2223456788899987 6 9999998764332 223
Q ss_pred CCeEEEEe-CCCcEEEEEEecccc--------------CCceeEEEEecCCCCCCCCCccCCCCCCCCC-------CCcc
Q 020796 82 WNPVLFKL-PSNGLLLFYKIGQEV--------------QKWSGCMKRSYNKGVTWSEREQLPPGILGPS-------KNKP 139 (321)
Q Consensus 82 ~~p~l~~~-~~G~l~l~~~~~~~~--------------~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~-------~~~~ 139 (321)
.+|.++.+ .+|+|++++...... ..+...+.+|+|+|.||+++..+........ ....
T Consensus 84 ~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~g 163 (356)
T d1w8oa3 84 SDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEG 163 (356)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECSEEC
T ss_pred ccceEEEeCCCCeEEEEEeeeccCCcccccccCCCCCCcEEEEEEEecCCcccccccccccccccccccccccccccccc
Confidence 45666655 578999987653211 1134578999999999999876653221111 1112
Q ss_pred EEccCCe----EEEeeeccc-CCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcE
Q 020796 140 ILLENGL----LLCGSSVES-WNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRV 214 (321)
Q Consensus 140 ~~~~~G~----~~~~~~~~~-~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~ 214 (321)
+++.+|. +........ .......+..++|++.+|...... ...++++.+++..++.+++++|........
T Consensus 164 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 238 (356)
T d1w8oa3 164 IQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAV-----GVGMDENKTVELSDGRVLLNSRDSARSGYR 238 (356)
T ss_dssp EECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCB-----CSSCCSEEEEECTTSCEEEEECCTTCCSEE
T ss_pred eeeeecccccceeeeeeeccccccceeEEEeccCCCcceeccccc-----CcccccceEEEecCcceeeeeeccccccce
Confidence 3333332 222211111 122345677888899999876422 123457788899999999999887655677
Q ss_pred EEEEeccCCcCCCCCccCCC-CCCCCceeEE-------EcCC-CcEEEEEeC---CCCCeEEEEEEcCCCCCCCcceeec
Q 020796 215 CMSESCDGGLTWSYAKPTQL-LNPNSGIDGV-------KLKD-GRLLLAYNT---VSRGVLKVALSKDDGDSWHDALTLE 282 (321)
Q Consensus 215 ~~~~S~D~G~tWs~~~~~~~-~~~~~~~~~~-------~~~~-g~~~lv~~~---~~r~~l~~~~S~D~G~tW~~~~~l~ 282 (321)
.+++|.|+|+||+.+..... ..+....... .+.+ +.++++.++ ..|.++.+++|.|+|+||+.+.+|.
T Consensus 239 ~~~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~i~ 318 (356)
T d1w8oa3 239 KVAVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQ 318 (356)
T ss_dssp EEEEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEE
T ss_pred EEEEeccCCCccceeeecccccCCCCCCceeEecccccccCCCCeEEEEECCCCCCCCcceEEEEEeCCCeecCCccEeC
Confidence 88999999999998754321 1111111111 1122 334444333 2577899999999999999999888
Q ss_pred ccCCCceeceEEEEccCCeEEEEEEeCCCeeEEEEeC
Q 020796 283 ENLAMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLL 319 (321)
Q Consensus 283 ~~~~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~ 319 (321)
++ .++||++++++||.|+|+|+. ..+|++.+|+
T Consensus 319 ~~---~~~Ys~~~~~~dg~i~~~ye~-g~~~~~~~~~ 351 (356)
T d1w8oa3 319 PG---SMSYSTLTALPDGTYGLLYEP-GTGIRYANFN 351 (356)
T ss_dssp EE---ECCCEEEEECTTSCEEEEECC-SSEEEEEEEC
T ss_pred CC---CCcCceeEEcCCCEEEEEEEC-CCCcEEEEee
Confidence 64 468999999999999999974 5689999986
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=99.96 E-value=9.6e-28 Score=215.54 Aligned_cols=289 Identities=18% Similarity=0.195 Sum_probs=198.0
Q ss_pred cccceEEEec--CCcEEEEEecCCC----CC--CCCcEEEEEEeCC-C-CcCCcEEccCCC----CCCCCCeEEEEeCCC
Q 020796 27 CHASTIVEVD--KGHFLVAYFGGSC----EG--APDVKIWLQTFKD-G-RWQSPIIADEEP----NVPMWNPVLFKLPSN 92 (321)
Q Consensus 27 ~~~p~l~~~~--~g~l~~~~~~~~~----~g--~~~~~i~~s~s~~-G-tWs~~~~~~~~~----~~~~~~p~l~~~~~G 92 (321)
-|+|+|+..+ +|.|+|+. +.+. .+ ...+.|+++||+| | ||++|+.+...+ .....+|+++.++++
T Consensus 7 ~ripsl~~~~~~~g~~~a~~-~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~~d~~~ 85 (364)
T d1w0pa3 7 DRIPSIVASSVTPGVVTAFA-EKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPIYDPSS 85 (364)
T ss_dssp CEEEEEEECSSSTTCEEEEE-EEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEEEETTT
T ss_pred CceeEEEEEcCCCCEEEEEE-eeeeCCCCCcccCCcceEEEEEeCCCCcCCCCCEEeecCCCCCCcccccCCeEEEECCC
Confidence 4899999886 67786653 3222 11 1235689999987 6 999999886432 335668988888765
Q ss_pred -cEEEEEEeccccC-----------CceeEEEEecCCCCCCCCCccCCCCCCCC---CCCccEEccCCeEEEeeecccCC
Q 020796 93 -GLLLFYKIGQEVQ-----------KWSGCMKRSYNKGVTWSEREQLPPGILGP---SKNKPILLENGLLLCGSSVESWN 157 (321)
Q Consensus 93 -~l~l~~~~~~~~~-----------~~~~~~~~S~D~G~TWs~~~~l~~~~~g~---~~~~~~~~~~G~~~~~~~~~~~~ 157 (321)
.+++++....... ........|+|+|.||+.+..+.....+. .....+...+|+++++.......
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 165 (364)
T d1w0pa3 86 NTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAIVLDRF 165 (364)
T ss_dssp TEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEEEESSS
T ss_pred CeEEEEEEecCCCCCcccccccccccCcEEEEecCCCCCcccccccccccceeeeecCCCccccccCCeEEEEEEeecCC
Confidence 4666655421110 11134568899999999887765422211 11222334689998876654334
Q ss_pred CCcEEEEEECCCCceeEEeeceecCC--------CCcceeeeeEEEcCCCeEEEEEeecCC-------CCcEEEEEeccC
Q 020796 158 SWGSWMEVTVDAGRSWRKYGPIYIPN--------ESLSVIQPVPFHTANRTLRVLMRSFNG-------IGRVCMSESCDG 222 (321)
Q Consensus 158 ~~~~~~~~S~D~G~tW~~~~~~~~~~--------~~~~~~~~~~~~~~~G~l~~~~r~~~~-------~~~~~~~~S~D~ 222 (321)
+....+.+|.|+|++|+....+.... ...++.|+.++++++|++++.+|.... .+..++++|.|+
T Consensus 166 ~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~~~~~~~~~~~~S~D~ 245 (364)
T d1w0pa3 166 FLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQFLSKDG 245 (364)
T ss_dssp CEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETTEECCSEEEEEESSS
T ss_pred CCceeEEEeccCCcEEEeccccCcccccccccccccCCCCcceEEEecCceeEEEEEccCCcccCCcCCCCeEEEEEcCC
Confidence 45678899999999999865332110 012356788899999999999987531 234577899999
Q ss_pred CcCCCCCccCC------C--CCCCCceeEEEcCCCcEEEEEeC-C-------CCCeEEEEEEcCCCCCCCcceeecccCC
Q 020796 223 GLTWSYAKPTQ------L--LNPNSGIDGVKLKDGRLLLAYNT-V-------SRGVLKVALSKDDGDSWHDALTLEENLA 286 (321)
Q Consensus 223 G~tWs~~~~~~------~--~~~~~~~~~~~~~~g~~~lv~~~-~-------~r~~l~~~~S~D~G~tW~~~~~l~~~~~ 286 (321)
|+||+.+.... . +............+++.+++|.. . .|.++.+++|.|+|+||+.+..|..+
T Consensus 246 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G~TW~~~~~l~~g-- 323 (364)
T d1w0pa3 246 GITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQLVNG-- 323 (364)
T ss_dssp SSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTTSCCEEEEECCSS--
T ss_pred CccccccccCcccccCCcCCCcccceeEEeecCCCceEEEEeCCCCCccCCCceeeeEEEEEcCCCcCCCCCeEEcCC--
Confidence 99998764311 1 11122233455567888888732 1 47789999999999999999888764
Q ss_pred CceeceEEEEccCCeEEEEEEeCCCeeEEEEeC
Q 020796 287 MEFSYPAVIQASDGSVHITYTYNRTQIKHVVLL 319 (321)
Q Consensus 287 ~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~ 319 (321)
.++||.+++++||.|+|+|+.+++.|++.+|.
T Consensus 324 -~~~Ys~~~~~~~g~~~~~ye~~~~~i~~~~~~ 355 (364)
T d1w0pa3 324 -ASAYSDIYQLDSENAIVIVETDNSNMRILRMP 355 (364)
T ss_dssp -BCCSEEEEECSSSEEEEEEECGGGCEEEEEEE
T ss_pred -CCCCCceEEcCCCEEEEEEEcCCCcEEEEEEE
Confidence 46899999999999999999999999999985
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=99.96 E-value=2.3e-27 Score=215.87 Aligned_cols=283 Identities=18% Similarity=0.212 Sum_probs=185.8
Q ss_pred CCccccceEEEecCCcEEEEEecCCCC---CCCCcEEEEEEeCC-C-CcCCcEEccCCCCC---CCCCeEEEEeCCCcEE
Q 020796 24 FKSCHASTIVEVDKGHFLVAYFGGSCE---GAPDVKIWLQTFKD-G-RWQSPIIADEEPNV---PMWNPVLFKLPSNGLL 95 (321)
Q Consensus 24 ~~~~~~p~l~~~~~g~l~~~~~~~~~~---g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~~---~~~~p~l~~~~~G~l~ 95 (321)
...+|+|+|+.. +|.|+|+ .+++.. ..+++.|+++||.| | ||++++.+.+.+.. ...+|+++.+ .++++
T Consensus 31 ~~syRIPsLv~~-~GtlLA~-ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~~~v~~~~~~~~~~~~dP~~v~d-~~~i~ 107 (399)
T d2ah2a2 31 VHSFRLPALVNV-DGVMVAI-ADARYETSFDNSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVIVK-GNKLY 107 (399)
T ss_dssp CSEEEEEEEEEE-TTEEEEE-EEEESSCSCSSSCEEEEEEEESSTTSSCEEEEEECCCCSSTTCEEEEEEEEEE-TTEEE
T ss_pred EEEEeceEEEEE-CCEEEEE-EeEEECCCCCCcceEEEEEeecCCCcCCCceEEEecCCCCCcccccCCeEEEe-CCeEE
Confidence 347899999977 7988875 554432 23467899999986 6 99998877653332 3447887765 67888
Q ss_pred EEEEecccc----------CCce-----eEEEEecCCCC-----CCCCCccCCCCCCC---------C--CCCccEEccC
Q 020796 96 LFYKIGQEV----------QKWS-----GCMKRSYNKGV-----TWSEREQLPPGILG---------P--SKNKPILLEN 144 (321)
Q Consensus 96 l~~~~~~~~----------~~~~-----~~~~~S~D~G~-----TWs~~~~l~~~~~g---------~--~~~~~~~~~~ 144 (321)
+++...... ..+. +.+.+|.|++. ||+.|..+...... + -.+..+++.+
T Consensus 108 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~~~~~~~~~~~~~~~~~~g~~~gi~~~~ 187 (399)
T d2ah2a2 108 VLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPAEMEGMHTNQFLGGAGVAIVASN 187 (399)
T ss_dssp EEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECGGGSCSEETTEEEEEEEECSEECEECTT
T ss_pred EEEEEecCCCcccccccCCCCCceeEEEEEEEeccCCCcccCCcccCCcccccccccccccCcccceeccCCcceeeecC
Confidence 775431110 1111 23556666654 89999887642211 1 1123468889
Q ss_pred CeEEEeeecccCC-CCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCC
Q 020796 145 GLLLCGSSVESWN-SWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGG 223 (321)
Q Consensus 145 G~~~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G 223 (321)
|+++++.+..... .....+++|+|+|+||+....+. + .++.++.+ +..||+|++..|... +...+++|.|+|
T Consensus 188 GrLv~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~--~--~~~~~~~v-~~~dG~lll~~R~~~--g~r~v~~S~DgG 260 (399)
T d2ah2a2 188 GNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRS--A--FGCSEPVA-LEWEGKLIINTRVDY--RRRLVYESSDMG 260 (399)
T ss_dssp SCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCCC--C--TTCEEEEE-EEETTEEEEEEECTT--SCCCEEEESSTT
T ss_pred ccEecceEeecCCCceEEEEEEeCCCCceeEeccccC--C--CCccccce-eccCCeEEEEEecCC--CceeEEEEcCCC
Confidence 9999987643322 33456889999999999875332 1 24444544 456899999999765 333457899999
Q ss_pred cCCCCCccCC----CCCC-----CCcee-EEEcCCCcEEEEE-eCC------CCCeEEEEEEcCCCCCCCcceeecccCC
Q 020796 224 LTWSYAKPTQ----LLNP-----NSGID-GVKLKDGRLLLAY-NTV------SRGVLKVALSKDDGDSWHDALTLEENLA 286 (321)
Q Consensus 224 ~tWs~~~~~~----~~~~-----~~~~~-~~~~~~g~~~lv~-~~~------~r~~l~~~~S~D~G~tW~~~~~l~~~~~ 286 (321)
+||+++.... .+.+ ..... +....+++-+|+| ++. .|..|.+++|.|+|++|..+..+.++
T Consensus 261 ~TW~~~~~~~~~v~~~~~~~~~~~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~~Sdd~g~~w~~~~~i~~g-- 338 (399)
T d2ah2a2 261 NTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLWLTDNQRIYNVGQVSIGDE-- 338 (399)
T ss_dssp SSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEEEESSSCEEEEEECSCTTC--
T ss_pred ccccccccccccccCCCcccCCCcccceeeEeccCCCeEEEEECCCCccccccccceEEEEeCCCCccccCceEecCC--
Confidence 9998764321 1111 11111 1223456655655 321 35678999999999999988877754
Q ss_pred CceeceEEEEccCCeEEEEEEeCCC---eeEEEEeCC
Q 020796 287 MEFSYPAVIQASDGSVHITYTYNRT---QIKHVVLLP 320 (321)
Q Consensus 287 ~~~~yp~~~~~~dg~l~v~y~~~~~---~i~~~~~~~ 320 (321)
..+|.+|+ +.||.|+|+||.+.+ .|.+++|||
T Consensus 339 -~saYS~L~-~~dg~ig~lYE~~~~~~~~i~f~rlT~ 373 (399)
T d2ah2a2 339 -NSAYSSVL-YKDDKLYCLHEINSNEVYSLVFARLVG 373 (399)
T ss_dssp -BCCCEEEE-EETTEEEEEEEEEETTEEEEEEEECHH
T ss_pred -CccccEeE-eECCEEEEEEEcCCCCeeeEEEehHHH
Confidence 45899997 588999999998543 688888875
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=99.96 E-value=5.5e-28 Score=218.99 Aligned_cols=298 Identities=15% Similarity=0.143 Sum_probs=193.1
Q ss_pred eeEEecCCCCC-CCccccceEEEecCCcEEEEEecCC--CCCCCCcEEEEEEeCC-C-CcCCcEEccCCCCC----CCCC
Q 020796 13 EEFTFPANSAP-FKSCHASTIVEVDKGHFLVAYFGGS--CEGAPDVKIWLQTFKD-G-RWQSPIIADEEPNV----PMWN 83 (321)
Q Consensus 13 ~~~~f~~~~~~-~~~~~~p~l~~~~~g~l~~~~~~~~--~~g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~~----~~~~ 83 (321)
++.||++++.. ..++|+|+|+.+++|+|+|++-+.. ....+++.|+++||+| | ||++++.+...+.. ...+
T Consensus 18 ~~~~~~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~~~i~~~~~~~~~~~~~~ 97 (379)
T d3sila_ 18 GNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSKLSRVMD 97 (379)
T ss_dssp SCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEEEEECCCCSCTTTCEEEE
T ss_pred CcEEEecCCCCceeeEeccEEEEECCCcEEEEEeeEECCCCCCCCceEEEEEecCCccCCCCCEEccCCCCCccccccCC
Confidence 35888888544 4679999999999999999874311 1223467789999987 6 99999987654322 2345
Q ss_pred eEEE-EeCCCcEEEEEEeccc---------------cCCceeEEEEecCCCCCCCCCccCCCCC------C---CCCCCc
Q 020796 84 PVLF-KLPSNGLLLFYKIGQE---------------VQKWSGCMKRSYNKGVTWSEREQLPPGI------L---GPSKNK 138 (321)
Q Consensus 84 p~l~-~~~~G~l~l~~~~~~~---------------~~~~~~~~~~S~D~G~TWs~~~~l~~~~------~---g~~~~~ 138 (321)
|.++ ...+|++++++..... ...+...+.+|+|+|.||+.+..+.... . ....+.
T Consensus 98 p~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~~~~~~~~~~~~~~g~g~ 177 (379)
T d3sila_ 98 PTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHDIVTKNGTISAMLGGVGS 177 (379)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHHHHHHHCSEEEEEECSEE
T ss_pred ccEEEECCCCCEEEEEEEEecCCCCCccccccccCCCCceeEEEEecCccccccccCccccccccccccceeeeccCccc
Confidence 6544 4468988877643211 1123456789999999999887654211 0 011233
Q ss_pred cEEccCCeEEEeeeccc---CCCC-cEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCCcE
Q 020796 139 PILLENGLLLCGSSVES---WNSW-GSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIGRV 214 (321)
Q Consensus 139 ~~~~~~G~~~~~~~~~~---~~~~-~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~ 214 (321)
.+++.+|+++++.+... .... ...++.|+| |.+|....... ..++.|+.++++ +|+|++..|.. +..
T Consensus 178 gi~~~~g~l~~p~~~~~~~~~~~~~~~~~~~sdd-gg~w~~~~~~~----~~~~~E~~vve~-dG~ll~~~R~~---g~~ 248 (379)
T d3sila_ 178 GLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTD-GITWSLPSGYC----EGFGSENNIIEF-NASLVNNIRNS---GLR 248 (379)
T ss_dssp CEECTTSCEEEEEEEEECTTSSCSEEEEEEEESS-SSSEECCSCCE----ECTTCCEEEEEE-TTEEEEEECCS---SBC
T ss_pred eEeecccceeeeEEEEecCCCCccEEEEEEEcCC-CCcceeeeccc----CCCCCCCEEEec-CCcEEEEEEcC---Cce
Confidence 46788999877643311 1122 233445555 55555433222 235678899988 89999988875 334
Q ss_pred EEEEeccCCcCCCCCccCC----CCCCCCceeEEEcCC-CcEEEEEeC---CCCCeEEEEEEcCCCCCCCcceeecc---
Q 020796 215 CMSESCDGGLTWSYAKPTQ----LLNPNSGIDGVKLKD-GRLLLAYNT---VSRGVLKVALSKDDGDSWHDALTLEE--- 283 (321)
Q Consensus 215 ~~~~S~D~G~tWs~~~~~~----~~~~~~~~~~~~~~~-g~~~lv~~~---~~r~~l~~~~S~D~G~tW~~~~~l~~--- 283 (321)
++++|.|+|+||+++.+.. .+.+.....++.+.. +++++++.+ ..|..+.+.+|.|+|+||.....+..
T Consensus 249 ~v~~S~DgG~TWse~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~r~~~~~~~s~d~g~tW~~~~~~~~~~~ 328 (379)
T d3sila_ 249 RSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGEVKLIDDFY 328 (379)
T ss_dssp BCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCcccccccccccccccccccccceeEEeccCCcEEEEECCCCCCCCcccEEEEEeeCCCcCCCCcEEEeccC
Confidence 5678999999999765432 222333344454444 455555543 25666778889999999998664421
Q ss_pred ---cCCCceeceEEEEccCC---eEEEEEEeCCCeeEEEEeCC
Q 020796 284 ---NLAMEFSYPAVIQASDG---SVHITYTYNRTQIKHVVLLP 320 (321)
Q Consensus 284 ---~~~~~~~yp~~~~~~dg---~l~v~y~~~~~~i~~~~~~~ 320 (321)
.....++|+.|++.++| .|+|+||.+ ..|.+.+|++
T Consensus 329 ~~~~~~~~~aYS~l~~~~~~~~~~l~~lyE~~-~~i~~~~lt~ 370 (379)
T d3sila_ 329 PKVGNASGAGYSCLSYRKNVDKETLYVVYEAN-GSIEFQDLSR 370 (379)
T ss_dssp CSCCCTTSCCCEEEEEEEETTEEEEEEEEEET-TEEEEEECGG
T ss_pred ccccCCCCcccceeEEcCCCCCCEEEEEEECC-CCEEehHHHh
Confidence 12245789999987554 899999976 5799999886
|
| >d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Leech intramolecular trans-sialidase, C-terminal domain species: North american leech (Macrobdella decora) [TaxId: 6405]
Probab=99.64 E-value=4e-14 Score=130.98 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=73.7
Q ss_pred EEEEEECCCCceeEEeecee-cCCCCccee--ee-eEEEcC----CCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC
Q 020796 161 SWMEVTVDAGRSWRKYGPIY-IPNESLSVI--QP-VPFHTA----NRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT 232 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~~~~~-~~~~~~~~~--~~-~~~~~~----~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~ 232 (321)
+.+.+|+|+|+||+.+..+. ..+...... .| ..+++. +|||++.+.... .....+.+|+|+|+||+.....
T Consensus 232 ~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~gp~~gi~l~~~~~~grlv~~~~~~~-~~~~~~~~SdD~G~tW~~~~~~ 310 (483)
T d2slia2 232 LAMRYSDDEGASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKS-SAELGFMYSDDHGDNWTYVEAD 310 (483)
T ss_dssp EEEEEESSTTSSCCCCEECGGGCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEES-SCSEEEEEESSTTSSCEEEECC
T ss_pred EEEEEecCcccccccccccccccCCcceeEeccccceeEeecCCcCceEEEEEEecC-CceeEEEEecCCcceeEecccc
Confidence 45789999999999764221 111111111 11 123332 478877654432 2445567799999999864433
Q ss_pred CCCCC-CCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcceee
Q 020796 233 QLLNP-NSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDALTL 281 (321)
Q Consensus 233 ~~~~~-~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~~l 281 (321)
..+.. .....++.+.+|++++..+.... ...+++|.|+|+||+++...
T Consensus 311 ~~~~~~~~e~~~~e~~~g~l~~~~R~~~~-~~~~~~S~DgG~tW~~~~~~ 359 (483)
T d2slia2 311 NLTGGATAEAQIVEMPDGSLKTYLRTGSN-CIAEVTSIDGGETWSDRVPL 359 (483)
T ss_dssp CCCSCCCCCEEEEECTTSCEEEEECCSSS-SCEEEEESSTTSSCCCCEEC
T ss_pred CCCCCCceEEEEEEccCceEEEEeccCCC-cEEEEEEcCCCcccCcCccc
Confidence 22221 12356788999999998864322 23678999999999987654
|
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.1e-14 Score=128.26 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=127.2
Q ss_pred CCCccccceEEEe-cCCcEEEEEecCCC---------CCCCCcEEEEEEeCC-C-CcCCcEEccCC---CCCC-------
Q 020796 23 PFKSCHASTIVEV-DKGHFLVAYFGGSC---------EGAPDVKIWLQTFKD-G-RWQSPIIADEE---PNVP------- 80 (321)
Q Consensus 23 ~~~~~~~p~l~~~-~~g~l~~~~~~~~~---------~g~~~~~i~~s~s~~-G-tWs~~~~~~~~---~~~~------- 80 (321)
+...+..|+++.. ++|+|+++|..... .......+++.+|+| | ||++|+.+... +...
T Consensus 77 ~~~~~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~ 156 (374)
T d1so7a_ 77 DGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAV 156 (374)
T ss_dssp TTEEEEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEE
T ss_pred CCceeeeeeEEEECCCCEEEEEEEeecCCCcccccccCCCCcccEEEEeCCCCcccccCceeccccccccccCCceeeee
Confidence 3455567776654 47999998743211 112234577888886 6 99999977421 1100
Q ss_pred -CCCeEEEEeCCCcEEEEEEecccc-----CCceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecc
Q 020796 81 -MWNPVLFKLPSNGLLLFYKIGQEV-----QKWSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVE 154 (321)
Q Consensus 81 -~~~p~l~~~~~G~l~l~~~~~~~~-----~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~ 154 (321)
..........+|++.+.+...... ..+...+.+|+|+|+||.....+..+ ...+.++.+.+|++++.....
T Consensus 157 ~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~---~~e~~~~e~~~~~~~~~~~~~ 233 (374)
T d1so7a_ 157 GPGHCLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQD---TLECQVAEVETGEQRVVTLNA 233 (374)
T ss_dssp CSSCCEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCSBS---EEEEEEEEEEC--CEEEEEEE
T ss_pred ecccceeeeecCCcEEeeeEeeccCcccCCCCceEEEEEecCCccccccccccCCC---CccceEEEecccccceeEEec
Confidence 001111223567776644321111 11234578999999999765443321 233445666777654432221
Q ss_pred cCCCCcEEEEEECCCCceeEEeecee--cCCCCcceeeeeEEE--------cCCCeEEEEEeecCC--CC--cEEEEEec
Q 020796 155 SWNSWGSWMEVTVDAGRSWRKYGPIY--IPNESLSVIQPVPFH--------TANRTLRVLMRSFNG--IG--RVCMSESC 220 (321)
Q Consensus 155 ~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~~~~~~~~~~--------~~~G~l~~~~r~~~~--~~--~~~~~~S~ 220 (321)
+.......+++|.|+|+||+++.... ..+...+| +..++. ..++.++++...... +. .++++.|.
T Consensus 234 ~~~~~~r~~~~S~D~G~tW~~~~~~~~l~~~~~~~~-~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~ 312 (374)
T d1so7a_ 234 RSHLRARVQAQSTNDGLDFQESQLVKKLVEPPPQGC-QGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRP 312 (374)
T ss_dssp EESSSEEEEEEESSTTSSCCCCEEEEEEECCTTTCC-CCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESST
T ss_pred ccCCCcEEEEEecCCCcccccccccccccCCCCCCc-cceEEEecccccccccCCceEEEeCCCCCCCCCceEEEEEEEC
Confidence 11233467899999999999865321 12222222 222221 123344444433221 12 36778899
Q ss_pred cCCcCCCCCccCCCCCCCCceeEEEcCCCc-----EEEEEeCCCCCeEEE
Q 020796 221 DGGLTWSYAKPTQLLNPNSGIDGVKLKDGR-----LLLAYNTVSRGVLKV 265 (321)
Q Consensus 221 D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~-----~~lv~~~~~r~~l~~ 265 (321)
|+|+||+.+..+. +++.+..+++.+++|. +.++|+......|..
T Consensus 313 D~G~tW~~~~~i~-~g~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f 361 (374)
T d1so7a_ 313 PAPEAWSEPVLLA-KGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVF 361 (374)
T ss_dssp TCGGGCCCCEEEE-EEEEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEE
T ss_pred CCCeecCCceEeC-CCCCcCchheEcCCCCCCceEEEEEEecCCCceEEE
Confidence 9999999887653 2222234456666663 778886544344433
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=99.51 E-value=6.6e-13 Score=118.74 Aligned_cols=195 Identities=14% Similarity=0.146 Sum_probs=111.0
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCCCCCCCC----CC-cc-EEccCCeEEE
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPPGILGPS----KN-KP-ILLENGLLLC 149 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~----~~-~~-~~~~~G~~~~ 149 (321)
.++.|.|+..++|+|++++..... .+..+..+.||+|+|+||+++..+..+..... .. .. +...+|++++
T Consensus 32 ~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~v~~~~~g~~~~ 111 (379)
T d3sila_ 32 YFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKKIAIYNDRVNSKLSRVMDPTCIVANIQGRETI 111 (379)
T ss_dssp EEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEEEEECCCCSCTTTCEEEEEEEEEEEETTEEEE
T ss_pred eEeccEEEEECCCcEEEEEeeEECCCCCCCCceEEEEEecCCccCCCCCEEccCCCCCccccccCCccEEEECCCCCEEE
Confidence 367799999999999998864221 22234568899999999999887764321111 11 11 2335677643
Q ss_pred eee----ccc------------CCCCcEEEEEECCCCceeEEeeceec----CCCCcce--ee-eeEEEcCCCeEEEEEe
Q 020796 150 GSS----VES------------WNSWGSWMEVTVDAGRSWRKYGPIYI----PNESLSV--IQ-PVPFHTANRTLRVLMR 206 (321)
Q Consensus 150 ~~~----~~~------------~~~~~~~~~~S~D~G~tW~~~~~~~~----~~~~~~~--~~-~~~~~~~~G~l~~~~r 206 (321)
... ... ...+...+..|.|+|.||+.+..+.. ....... .. ...+.+.+|+++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~~~~~~~~~~~~~~g~g~gi~~~~g~l~~p~~ 191 (379)
T d3sila_ 112 LVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHDIVTKNGTISAMLGGVGSGLQLNDGKLVFPVQ 191 (379)
T ss_dssp EEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHHHHHHHCSEEEEEECSEECEECTTSCEEEEEE
T ss_pred EEEEEecCCCCCccccccccCCCCceeEEEEecCccccccccCccccccccccccceeeeccCccceEeecccceeeeEE
Confidence 321 100 11245678899999999998753311 0001000 01 1235678888776543
Q ss_pred ec---CCCC--cEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 207 SF---NGIG--RVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 207 ~~---~~~~--~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
.. .... ...+..|+| |.+|.......... .....++.+ +|+++|..+... ...++.|.|+|+||+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~sdd-gg~w~~~~~~~~~~-~~E~~vve~-dG~ll~~~R~~g--~~~v~~S~DgG~TWse~~ 264 (379)
T d3sila_ 192 MVRTKNITTVLNTSFIYSTD-GITWSLPSGYCEGF-GSENNIIEF-NASLVNNIRNSG--LRRSFETKDFGKTWTEFP 264 (379)
T ss_dssp EEECTTSSCSEEEEEEEESS-SSSEECCSCCEECT-TCCEEEEEE-TTEEEEEECCSS--BCBCEEESSSSSCCEECT
T ss_pred EEecCCCCccEEEEEEEcCC-CCcceeeecccCCC-CCCCEEEec-CCcEEEEEEcCC--ceEEEEEcCCCccccccc
Confidence 32 1111 223344655 55554332221122 223456666 799888776432 224689999999998764
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=99.51 E-value=3.5e-12 Score=111.81 Aligned_cols=201 Identities=21% Similarity=0.187 Sum_probs=117.7
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCCCCCCCC-----CCccEEc-cCCeEEE
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPPGILGPS-----KNKPILL-ENGLLLC 149 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~-----~~~~~~~-~~G~~~~ 149 (321)
.++.|.|+..+||+|+++|..... .+.-+..++||+|+|+||+++..+.....+.. ...+++. .+|++++
T Consensus 20 ~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~~~~~~~~~v~~~~~g~i~l 99 (356)
T d1w8oa3 20 NYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPIKGFSDPSYLVDRETGTIFN 99 (356)
T ss_dssp CEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSCBEEEEEEEEECTTTCCEEE
T ss_pred eeEeCEEEEECCCCEEEEEeeeeCCCCCCCCceEEEEEccCCCCCCCCCEEeecCCCCCcccccccceEEEeCCCCeEEE
Confidence 456799999999999999864221 12234578999999999999988765321111 1112333 4688765
Q ss_pred eeec-cc------------C--CCCcEEEEEECCCCceeEEeeceecCCCC--cceee--e-eEEEcCCC----eEEEEE
Q 020796 150 GSSV-ES------------W--NSWGSWMEVTVDAGRSWRKYGPIYIPNES--LSVIQ--P-VPFHTANR----TLRVLM 205 (321)
Q Consensus 150 ~~~~-~~------------~--~~~~~~~~~S~D~G~tW~~~~~~~~~~~~--~~~~~--~-~~~~~~~G----~l~~~~ 205 (321)
.... .. + ......+.+|+|+|+||+.+..+...... ..... + ....+.+| ++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~ 179 (356)
T d1w8oa3 100 FHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAASGEGIQLRYGPHAGRLIQQY 179 (356)
T ss_dssp EEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECSEECEECCSSTTTTCEEEEE
T ss_pred EEeeeccCCcccccccCCCCCCcEEEEEEEecCCcccccccccccccccccccccccccccccceeeeecccccceeeee
Confidence 4211 10 0 11357899999999999987644211111 11100 1 11223333 232222
Q ss_pred eecC--CCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCC-CCCeEEEEEEcCCCCCCCcceeec
Q 020796 206 RSFN--GIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTV-SRGVLKVALSKDDGDSWHDALTLE 282 (321)
Q Consensus 206 r~~~--~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~-~r~~l~~~~S~D~G~tW~~~~~l~ 282 (321)
.... ......+..+.|++.+|...... ........++...++.++++.+.. ......++.|.|+|+||+.+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~S~D~G~tw~~~~~~~ 257 (356)
T d1w8oa3 180 TIINAAGAFQAVSVYSDDHGRTWRAGEAV--GVGMDENKTVELSDGRVLLNSRDSARSGYRKVAVSTDGGHSYGPVTIDR 257 (356)
T ss_dssp EEECTTSCEEEEEEEESSTTSSCEECCCB--CSSCCSEEEEECTTSCEEEEECCTTCCSEEEEEEESSTTSCCCCCEEEE
T ss_pred eeccccccceeEEEeccCCCcceeccccc--CcccccceEEEecCcceeeeeeccccccceEEEEeccCCCccceeeecc
Confidence 2211 12234556688888999865432 222234566777888888887643 334457889999999999876543
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=99.50 E-value=1.3e-12 Score=117.68 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=113.9
Q ss_pred CCCCCeEEEEeCCCcEEEEEEeccc----cCCceeEEEEecCCCCCCCCCccCCCCCCCCC---CCccEEccCCeEEEee
Q 020796 79 VPMWNPVLFKLPSNGLLLFYKIGQE----VQKWSGCMKRSYNKGVTWSEREQLPPGILGPS---KNKPILLENGLLLCGS 151 (321)
Q Consensus 79 ~~~~~p~l~~~~~G~l~l~~~~~~~----~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g~~---~~~~~~~~~G~~~~~~ 151 (321)
.+++.|.|+.. +|+|++|...... .+..+..+.||+|+|+||+++..+.+...... ..+.++...+++++.+
T Consensus 32 ~syRIPsLv~~-~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~~~v~~~~~~~~~~~~dP~~v~d~~~i~ll~ 110 (399)
T d2ah2a2 32 HSFRLPALVNV-DGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQIAIKNSRASSVSRVVDPTVIVKGNKLYVLV 110 (399)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEEEEECCCCSSTTCEEEEEEEEEETTEEEEEE
T ss_pred EEEeceEEEEE-CCEEEEEEeEEECCCCCCcceEEEEEeecCCCcCCCceEEEecCCCCCcccccCCeEEEeCCeEEEEE
Confidence 46788999876 8999888654211 22335678999999999998877664221111 1122233456765543
Q ss_pred --ecccC-------CC--C-----cEEEEEECCCCc-----eeEEeeceec--CCCCcc-----ee-ee-eEEEcCCCeE
Q 020796 152 --SVESW-------NS--W-----GSWMEVTVDAGR-----SWRKYGPIYI--PNESLS-----VI-QP-VPFHTANRTL 201 (321)
Q Consensus 152 --~~~~~-------~~--~-----~~~~~~S~D~G~-----tW~~~~~~~~--~~~~~~-----~~-~~-~~~~~~~G~l 201 (321)
+.+.. .. + ...+..|.|++. ||+.+..+.. .....+ +. .+ .-+++.+|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~~~~~~~~~~~~~~~~~~g~~~gi~~~~GrL 190 (399)
T d2ah2a2 111 GSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPAEMEGMHTNQFLGGAGVAIVASNGNL 190 (399)
T ss_dssp EEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECGGGSCSEETTEEEEEEEECSEECEECTTSCE
T ss_pred EEecCCCcccccccCCCCCceeEEEEEEEeccCCCcccCCcccCCcccccccccccccCcccceeccCCcceeeecCccE
Confidence 22110 01 1 123556776655 8988764421 111111 00 11 1246788999
Q ss_pred EEEEeec--CCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCCCCCCCcce
Q 020796 202 RVLMRSF--NGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 202 ~~~~r~~--~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~G~tW~~~~ 279 (321)
++-+... .+.....+.+|+|+|+||+...... .....-.++.+.||+++|..+...+ ...+++|.|+|+||.++.
T Consensus 191 v~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~--~~~~~~~~v~~~dG~lll~~R~~~g-~r~v~~S~DgG~TW~~~~ 267 (399)
T d2ah2a2 191 VYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRS--AFGCSEPVALEWEGKLIINTRVDYR-RRLVYESSDMGNTWLEAV 267 (399)
T ss_dssp EEEEEEEETTCCEEEEEEEESSTTSSCEECSCCC--CTTCEEEEEEEETTEEEEEEECTTS-CCCEEEESSTTSSCEECT
T ss_pred ecceEeecCCCceEEEEEEeCCCCceeEeccccC--CCCccccceeccCCeEEEEEecCCC-ceeEEEEcCCCccccccc
Confidence 8766432 2222334567999999999755432 2222234455678999998875422 224689999999998753
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=99.44 E-value=3.3e-12 Score=113.00 Aligned_cols=231 Identities=16% Similarity=0.151 Sum_probs=131.7
Q ss_pred CccccceEEEecCC-cEEEEEecCC---CC------CCCCcEEEEEEeCC-C-CcCCcEEccCCCCC--CCCCeEEEEeC
Q 020796 25 KSCHASTIVEVDKG-HFLVAYFGGS---CE------GAPDVKIWLQTFKD-G-RWQSPIIADEEPNV--PMWNPVLFKLP 90 (321)
Q Consensus 25 ~~~~~p~l~~~~~g-~l~~~~~~~~---~~------g~~~~~i~~s~s~~-G-tWs~~~~~~~~~~~--~~~~p~l~~~~ 90 (321)
.....|.++..+++ .+++++.... .. ...+..++.++++| | +|+.+..+...... ...........
T Consensus 72 ~~~~~p~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (364)
T d1w0pa3 72 FDFSDPRPIYDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQ 151 (364)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCC
T ss_pred ccccCCeEEEECCCCeEEEEEEecCCCCCcccccccccccCcEEEEecCCCCCcccccccccccceeeeecCCCcccccc
Confidence 34456788877765 5555542211 00 11245577777776 6 99998876532211 11111112235
Q ss_pred CCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCC----------CCCCCccEEccCCeEEEeeecccC----
Q 020796 91 SNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGIL----------GPSKNKPILLENGLLLCGSSVESW---- 156 (321)
Q Consensus 91 ~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~----------g~~~~~~~~~~~G~~~~~~~~~~~---- 156 (321)
+|++++.+.. .........+..|.|+|.+|+....+..... +..+...+++.+|++++.......
T Consensus 152 ~G~~~~~~~~-~~~~~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~ 230 (364)
T d1w0pa3 152 NGRLIYPAIV-LDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVN 230 (364)
T ss_dssp TTCEEEEEEE-ESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEET
T ss_pred CCeEEEEEEe-ecCCCCceeEEEeccCCcEEEeccccCcccccccccccccCCCCcceEEEecCceeEEEEEccCCcccC
Confidence 7888765442 2222334567899999999987665543211 011233456778887665322110
Q ss_pred --CCCcEEEEEECCCCceeEEeeceec---CCCCcceee--eeEEEcCCCeEEEEEeecC-------CCCcEEEEEeccC
Q 020796 157 --NSWGSWMEVTVDAGRSWRKYGPIYI---PNESLSVIQ--PVPFHTANRTLRVLMRSFN-------GIGRVCMSESCDG 222 (321)
Q Consensus 157 --~~~~~~~~~S~D~G~tW~~~~~~~~---~~~~~~~~~--~~~~~~~~G~l~~~~r~~~-------~~~~~~~~~S~D~ 222 (321)
......+++|+|+|+||+....... .....+... .......+|+.++++.... ++..+.+..|.|+
T Consensus 231 ~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~ 310 (364)
T d1w0pa3 231 GVNYSPRQQFLSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDE 310 (364)
T ss_dssp TEECCSEEEEEESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESST
T ss_pred CcCCCCeEEEEEcCCCccccccccCcccccCCcCCCcccceeEEeecCCCceEEEEeCCCCCccCCCceeeeEEEEEcCC
Confidence 1123468999999999998753221 111111111 1223446677777764321 1235788899999
Q ss_pred CcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeC
Q 020796 223 GLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNT 257 (321)
Q Consensus 223 G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~ 257 (321)
|+||+.+..+. +...+...++.+++|+++++|+.
T Consensus 311 G~TW~~~~~l~-~g~~~Ys~~~~~~~g~~~~~ye~ 344 (364)
T d1w0pa3 311 GVTWKGPIQLV-NGASAYSDIYQLDSENAIVIVET 344 (364)
T ss_dssp TSCCEEEEECC-SSBCCSEEEEECSSSEEEEEEEC
T ss_pred CcCCCCCeEEc-CCCCCCCceEEcCCCEEEEEEEc
Confidence 99999876543 33333355677889999999974
|
| >d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=99.25 E-value=2.9e-10 Score=100.35 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=96.3
Q ss_pred EEEEEEeCCC-CcCCcEEccC-CCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCCCC
Q 020796 56 KIWLQTFKDG-RWQSPIIADE-EPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGILG 133 (321)
Q Consensus 56 ~i~~s~s~~G-tWs~~~~~~~-~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~g 133 (321)
.+.+|. ++| ||++...... ..........++..++|..++ |... ... -...+.+|+|+|+||+.+.......
T Consensus 88 ~~~~St-DgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~iv-w~~~-~~~-~~~gv~~StD~G~TW~~~~~~~~~~-- 161 (356)
T d2ebsa2 88 RGAYAT-DGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIV-WSTK-LDE-QASGPWYSHDYGKTWSVPAGDLKAQ-- 161 (356)
T ss_dssp TEEEES-SSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEE-EECC-CTT-CCSCCEEESSTTSCCBCCEESCCSC--
T ss_pred cEEEEe-cchhcccCCCcCCCCccccccccceEEEecCCCccE-EEec-ccC-CCcceEEEcCCCcceEEcCCCCCCC--
Confidence 344433 335 9986432221 111222334567778887554 3321 111 1223779999999999766432211
Q ss_pred CCCCccEEc-cCCeEEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeecCCCC
Q 020796 134 PSKNKPILL-ENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSFNGIG 212 (321)
Q Consensus 134 ~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~ 212 (321)
...++.. .+..++.... ...+++|+|+|+||+....- ++.. ......+.....|.|++.... .
T Consensus 162 --~~~i~~d~~~~~~~Ya~~-------~g~ly~StDgG~TW~~~~~~-~~~~--~~~~~~v~p~~~g~v~v~~~~----~ 225 (356)
T d2ebsa2 162 --TANVLSDKVQDGTFYATD-------GGKFFVSTDGGKSYAAKGAG-LVTG--TSLMPAVNPWVAGDVWVPVPE----G 225 (356)
T ss_dssp --CSCEEECSSSTTCEEEEE-------TTEEEEESSTTSEEEECCBT-CCCC--CCCCCEECTTSTTCEEEEETT----T
T ss_pred --ccEEEEeCcCCceEEecc-------cceEEEeCCCcccccccccC-Cccc--cceeEEEEeccCCceeecccc----c
Confidence 1112221 2444444322 23588999999999976421 1111 111112222335677664422 3
Q ss_pred cEEEEEeccCCcCCCCCccCCCCCC-----CCceeEEEcCCCcEEEEEe-CCCCCeEEEEEEcCCCCCCCcc
Q 020796 213 RVCMSESCDGGLTWSYAKPTQLLNP-----NSGIDGVKLKDGRLLLAYN-TVSRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 213 ~~~~~~S~D~G~tWs~~~~~~~~~~-----~~~~~~~~~~~g~~~lv~~-~~~r~~l~~~~S~D~G~tW~~~ 278 (321)
.| .+|.|+|+||++......... ..............+.++. ........+++|+|.|+||.++
T Consensus 226 Gl--~~StDgG~TWt~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~~~~~~~GvyrS~D~G~TW~~I 295 (356)
T d2ebsa2 226 GL--FHSTDFGASFTRVGTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKPGSDIGLYRSDDNGSTWTRV 295 (356)
T ss_dssp EE--EEESSTTSBCEEESSCEEEEEEEEEEC---------CCEEEEEEEESSTTSCSEEEEESSTTSSCEEC
T ss_pred ce--EEecCCcceEEEccCCCCCcceecccccccccccCCCCceEEEEEEecCCCcEeEEEEeCCCCCceEC
Confidence 34 469999999997532110000 0000001111122223332 2212233688999999999875
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=99.00 E-value=7e-09 Score=93.40 Aligned_cols=163 Identities=19% Similarity=0.246 Sum_probs=82.3
Q ss_pred EEEEecCCCCCCCCCccCCCCCCCCC-CCccEEcc-C-CeEEEeeecccCCCCcEEEEEECCCCceeEEeeceec-----
Q 020796 110 CMKRSYNKGVTWSEREQLPPGILGPS-KNKPILLE-N-GLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYI----- 181 (321)
Q Consensus 110 ~~~~S~D~G~TWs~~~~l~~~~~g~~-~~~~~~~~-~-G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~----- 181 (321)
.+.+|+|+|+||+....+........ ...+.+.+ + +.+++... ....+++|.|+|+||++......
T Consensus 141 gl~~S~D~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~------~~~giy~S~DgG~TW~~v~~~p~~~~~~ 214 (427)
T d2ebsa1 141 GIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASAT------APQGMYVTHDGGVSWEPVAGQPSSWLNR 214 (427)
T ss_dssp CEEEESSTTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEES------STTCEEEESSTTSSCEECTTCCCSCCHH
T ss_pred ceeeecCCCceeeecccCcccccCCccceEEEecccccceeeeeee------ecccceeccCCCCCceECcCCCcccccc
Confidence 37799999999987654432211101 01111211 2 33443321 12238899999999997531110
Q ss_pred -----CCCCcc--eeeeeEEEcCCCeEEEEEeecC---CCCcEEEEEeccCCcCCCCCccCCC----------CCCCCce
Q 020796 182 -----PNESLS--VIQPVPFHTANRTLRVLMRSFN---GIGRVCMSESCDGGLTWSYAKPTQL----------LNPNSGI 241 (321)
Q Consensus 182 -----~~~~~~--~~~~~~~~~~~G~l~~~~r~~~---~~~~~~~~~S~D~G~tWs~~~~~~~----------~~~~~~~ 241 (321)
...... ...........+.+++.+.... ....-.+.+|.|+|.+|+....... ..+...+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~g~v~~s~d~g~~W~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (427)
T d2ebsa1 215 TTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGF 294 (427)
T ss_dssp HHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCCSSCCCCEEEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEE
T ss_pred eeeecCCCCcceeeeccceeecCCCceEEEEeccCCccccCCCceEeecccccceeeccCcccccccccccccccccccc
Confidence 000001 1122233345567777654322 1112234578999999986542110 0011111
Q ss_pred e-EEE--cCCCcEEEEEeCC--CCCeEEEEEEcCCCCCCCcc
Q 020796 242 D-GVK--LKDGRLLLAYNTV--SRGVLKVALSKDDGDSWHDA 278 (321)
Q Consensus 242 ~-~~~--~~~g~~~lv~~~~--~r~~l~~~~S~D~G~tW~~~ 278 (321)
. +.. ...++++++.... ....-.+++|.|+|+||++.
T Consensus 295 ~~i~v~~~~~~~i~~~~~~~~~g~~~~~i~~S~DgG~TW~~i 336 (427)
T d2ebsa1 295 CGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDV 336 (427)
T ss_dssp EEEEECTTCTTCEEEEEECCCSCSSCCCEEEESSTTSSEEEH
T ss_pred cccccCCCCCcEEEEEEcccccccCCccEEECCCCCcCcccc
Confidence 1 222 2346777766432 22223578999999999864
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=98.95 E-value=3.4e-08 Score=88.77 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=91.4
Q ss_pred EEEEeCCC--cEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCC-CC--CCCCC-CccEEcc-C-CeEEEeeecccC
Q 020796 85 VLFKLPSN--GLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPP-GI--LGPSK-NKPILLE-N-GLLLCGSSVESW 156 (321)
Q Consensus 85 ~l~~~~~G--~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~-~~--~g~~~-~~~~~~~-~-G~~~~~~~~~~~ 156 (321)
.++.+|+. +||+. .+...+.....+.+|+|+|+||++...... .. .+... ..+.+.+ + ..+++...
T Consensus 65 ~iavdp~np~~vy~~--tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~---- 138 (427)
T d2ebsa1 65 SIALDPNNPDRLYLA--QGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR---- 138 (427)
T ss_dssp EEEEETTEEEEEEEE--ECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS----
T ss_pred EEEECCCCCCEEEEE--eccccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc----
Confidence 46677764 34432 233222223468999999999987543221 11 11111 1222322 2 23444311
Q ss_pred CCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEEEc--CCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCC-
Q 020796 157 NSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHT--ANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQ- 233 (321)
Q Consensus 157 ~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~--~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~- 233 (321)
...+++|+|+|+||+....+.. .......-..+... ..+.+++.... ...+ .+|.|+|+||++.....
T Consensus 139 ---~~gl~~S~D~G~tW~~~~~~~~-~~~~~~~~~~i~~~p~~~~~~y~~~~~---~~gi--y~S~DgG~TW~~v~~~p~ 209 (427)
T d2ebsa1 139 ---TEGIWKSSDRAKTWTNVTSIPD-AFTNGIGYTSVIFDPERNGTIYASATA---PQGM--YVTHDGGVSWEPVAGQPS 209 (427)
T ss_dssp ---SSCEEEESSTTSSCEECTTSSC-CCCSSSCEEEEEECTTSTTCEEEEESS---TTCE--EEESSTTSSCEECTTCCC
T ss_pred ---ccceeeecCCCceeeecccCcc-cccCCccceEEEecccccceeeeeeee---cccc--eeccCCCCCceECcCCCc
Confidence 1237899999999998643211 11111111233332 23456654322 1345 46999999998643110
Q ss_pred ---------CCC--C---CCceeEEEcCCCcEEEEEeCC----CCCeEEEEEEcCCCCCCCcce
Q 020796 234 ---------LLN--P---NSGIDGVKLKDGRLLLAYNTV----SRGVLKVALSKDDGDSWHDAL 279 (321)
Q Consensus 234 ---------~~~--~---~~~~~~~~~~~g~~~lv~~~~----~r~~l~~~~S~D~G~tW~~~~ 279 (321)
... . ...........+.+++++... ....-.++.|.|.|.+|....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~g~v~~s~d~g~~W~~i~ 273 (427)
T d2ebsa1 210 SWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDIT 273 (427)
T ss_dssp SCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCCSSCCCCEEEEEEETTTCCEEECC
T ss_pred ccccceeeecCCCCcceeeeccceeecCCCceEEEEeccCCccccCCCceEeecccccceeecc
Confidence 000 0 011122344567777877543 122236788999999998653
|
| >d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=98.89 E-value=2.4e-09 Score=94.32 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=79.6
Q ss_pred EEEEecCCCCCCCCCccCCCCCCCC-CC-CccEEccCCe-EEEeeecccCCCCcEEEEEECCCCceeEEeeceecCCCCc
Q 020796 110 CMKRSYNKGVTWSEREQLPPGILGP-SK-NKPILLENGL-LLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESL 186 (321)
Q Consensus 110 ~~~~S~D~G~TWs~~~~l~~~~~g~-~~-~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~ 186 (321)
.+.+|+|+|+||++....+.+.... .. ..+.+-.+|. ++..... ......+++|+|+|+||+...... .+..
T Consensus 88 ~~~~StDgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~ivw~~~~---~~~~~gv~~StD~G~TW~~~~~~~-~~~~- 162 (356)
T d2ebsa2 88 RGAYATDGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIVWSTKL---DEQASGPWYSHDYGKTWSVPAGDL-KAQT- 162 (356)
T ss_dssp TEEEESSSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEEEECCC---TTCCSCCEEESSTTSCCBCCEESC-CSCC-
T ss_pred cEEEEecchhcccCCCcCCCCccccccccceEEEecCCCccEEEecc---cCCCcceEEEcCCCcceEEcCCCC-CCCc-
Confidence 4678999999998765443322111 11 1222333444 3332111 112234789999999999754211 1111
Q ss_pred ceeeeeEEEc-CCC-eEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCC-CceeEEEcCCCcEEEEEeCCCCCeE
Q 020796 187 SVIQPVPFHT-ANR-TLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPN-SGIDGVKLKDGRLLLAYNTVSRGVL 263 (321)
Q Consensus 187 ~~~~~~~~~~-~~G-~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~-~~~~~~~~~~g~~~lv~~~~~r~~l 263 (321)
..++.. .+. .+++.. .+.+| +|.|+|+||+.... .++... ..+.+.....|.+++.....
T Consensus 163 ----~~i~~d~~~~~~~Ya~~-----~g~ly--~StDgG~TW~~~~~-~~~~~~~~~~~v~p~~~g~v~v~~~~~----- 225 (356)
T d2ebsa2 163 ----ANVLSDKVQDGTFYATD-----GGKFF--VSTDGGKSYAAKGA-GLVTGTSLMPAVNPWVAGDVWVPVPEG----- 225 (356)
T ss_dssp ----SCEEECSSSTTCEEEEE-----TTEEE--EESSTTSEEEECCB-TCCCCCCCCCEECTTSTTCEEEEETTT-----
T ss_pred ----cEEEEeCcCCceEEecc-----cceEE--EeCCCccccccccc-CCccccceeEEEEeccCCceeeccccc-----
Confidence 123322 223 444422 14454 68999999986442 222211 11222223457787766443
Q ss_pred EEEEEcCCCCCCCcce
Q 020796 264 KVALSKDDGDSWHDAL 279 (321)
Q Consensus 264 ~~~~S~D~G~tW~~~~ 279 (321)
.|++|+|+|+||.+..
T Consensus 226 Gl~~StDgG~TWt~i~ 241 (356)
T d2ebsa2 226 GLFHSTDFGASFTRVG 241 (356)
T ss_dssp EEEEESSTTSBCEEES
T ss_pred ceEEecCCcceEEEcc
Confidence 5889999999998653
|
| >d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: TM1225-like predicted glycosylases domain: Hypothetical protein TM1225 species: Thermotoga maritima [TaxId: 2336]
Probab=97.92 E-value=0.00097 Score=56.78 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=79.1
Q ss_pred CCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCC---CccCCCCC---C--CCCCCccEEccCCeEEEeee
Q 020796 81 MWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSE---REQLPPGI---L--GPSKNKPILLENGLLLCGSS 152 (321)
Q Consensus 81 ~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~---~~~l~~~~---~--g~~~~~~~~~~~G~~~~~~~ 152 (321)
..||.++.. +|+.+|+|.+....+.-...+.+|+| |.+|+. |...+... . +.+..+-++..++..++..+
T Consensus 45 vfNp~~i~~-~g~~~ll~r~~~~~~~~~ig~A~S~D-Gi~w~~~~~pv~~p~~~~~~~~~~gv~DPrv~~~~d~yym~yt 122 (327)
T d1vkda_ 45 VFNSAVVPY-NGEFVGVFRIDHKNTRPFLHFGRSKD-GINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIEDTYYITFC 122 (327)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEETTSCEEEEEEEESS-SSSCEECSSCCCEECTTSCBCCCSSEEEEEEEEETTEEEEEEE
T ss_pred eeccEEEEE-CCEEEEEEEecCCCCceEEEEEEcCC-ccCCEeCCCCeecCCCCCcccccCcEEcceEEEECCEEEEEEE
Confidence 446776654 89999999864332323356889987 789963 22211111 1 11111113334566555432
Q ss_pred cccCCCCcEEEEEECCCCceeEEeeceecCCCCcceeeeeEE-EcCCCeEEEEEeecC----CCCcEEEEEeccCCcCCC
Q 020796 153 VESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQPVPF-HTANRTLRVLMRSFN----GIGRVCMSESCDGGLTWS 227 (321)
Q Consensus 153 ~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~-~~~~G~l~~~~r~~~----~~~~~~~~~S~D~G~tWs 227 (321)
.. ..+..+.++.|+| +.+|+....+..+ .. ....++ +.-+|+++++.|... ..+.+.+++|.| +..|+
T Consensus 123 ~~-~~~~~i~lA~S~D-~~~w~k~g~~~~~-~~---kd~~lfpeki~Gky~ml~Rp~~~~~~~~~~I~la~S~D-l~~W~ 195 (327)
T d1vkda_ 123 TD-DHGPTIGVGMTKD-FKTFVRLPNAYVP-FN---RNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPD-MIHWG 195 (327)
T ss_dssp EE-SSSEEEEEEEESS-SSSEEEECCSSSS-SE---EEEEECSSCBTTBEEEEEEECCSSSCSCCCEEEEEESS-SSCBE
T ss_pred ec-CCCcEEEEEEecC-cchheecCCccCc-cc---cCceEeeeeccCeEEEEEeeccCCCcccceEEEEcCCC-ccccc
Confidence 22 2233566777765 6999987644222 11 112222 123689999988753 234689999988 78998
Q ss_pred CCc
Q 020796 228 YAK 230 (321)
Q Consensus 228 ~~~ 230 (321)
...
T Consensus 196 ~~~ 198 (327)
T d1vkda_ 196 NHR 198 (327)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
|
| >d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Beta-fructosidase (invertase), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.78 E-value=0.0026 Score=53.19 Aligned_cols=196 Identities=9% Similarity=0.046 Sum_probs=99.5
Q ss_pred ccccce-EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCCcE-EccCC-CCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 26 SCHAST-IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQSPI-IADEE-PNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 26 ~~~~p~-l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~~~-~~~~~-~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
....|- ++.. +|+.++.|.-... ...+.+.-.-++|+|- +|+..- .+.++ ....+..++.+. .+|+++++|+.
T Consensus 14 w~NDPnG~~~~-~G~yHlfyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~al~p~~d~~g~~sGsav~-~~g~~~~~yT~ 91 (294)
T d1uypa2 14 WMNDPNGLIFW-KGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWRHLPVALYPDDETHGVFSGSAVE-KDGKMFLVYTY 91 (294)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEETTSSSSCSCEEEEEEESSSSSCEEEEEEECCSSTTEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CcCCCccceEE-CCEEEEEEecCCCCCCCCCcEEEEEEeCCcCCeEECCcccccccCCCCeEEEEEEe-cCCeEEEEEEE
Confidence 334455 6655 6999987743322 1223444556889998 999743 44443 223344555544 58999999974
Q ss_pred cccc----CCceeEEEEecCCCCCCCCCcc---CCCC-CCC--CCCCccEEccCCeEEEeeecccCCCCc-EEEEEECCC
Q 020796 101 GQEV----QKWSGCMKRSYNKGVTWSEREQ---LPPG-ILG--PSKNKPILLENGLLLCGSSVESWNSWG-SWMEVTVDA 169 (321)
Q Consensus 101 ~~~~----~~~~~~~~~S~D~G~TWs~~~~---l~~~-~~g--~~~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~S~D~ 169 (321)
.... +.....+..++|+|.+|.+... +.+. ..+ ..+.+-+...+|.+++........... +.++.| ++
T Consensus 92 ~~~~~~~~~~~~~~~~a~s~dg~~w~k~~~npvi~~~~~~~~~~fRDP~V~~~~g~w~M~~g~~~~~~~G~i~ly~S-~D 170 (294)
T d1uypa2 92 YRDPTHNKGEKETQCVVMSENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGEWRMVLGSGKDEKIGRVLLYTS-DD 170 (294)
T ss_dssp EECCCSSCCCEEEEEEEEESSSSCCEECTTCCSBCSCSSTTEEEEEEEEEEEETTEEEEEEEEEETTTEEEEEEEEE-SS
T ss_pred eeCCCCCCcceeeeEEEECCCCCceEeecCCceecCCCccCccccCCCcccccCCEEEEEEEeeecCCccEEEEEEc-CC
Confidence 3211 1122233344456999985421 2111 111 012222344578876543322212222 344555 56
Q ss_pred CceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCC
Q 020796 170 GRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWS 227 (321)
Q Consensus 170 G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs 227 (321)
.++|+...++..... .+..| |.++.+. ++-++++......+..|..-..|+ .+|+
T Consensus 171 l~~W~~~g~l~~~~~-~~~~ECPdlf~l~-~~~vl~~s~~~~~~~~y~~G~~~~-~~f~ 226 (294)
T d1uypa2 171 LFHWKYEGAIFEDET-TKEIECPDLVRIG-EKDILIYSITSTNSVLFSMGELKE-GKLN 226 (294)
T ss_dssp SSSEEEEEEEEEETT-CSCEEEEEEEEET-TEEEEEEEETTTTEEEEEEEEEET-TEEE
T ss_pred ccceeEeccceeCCC-CCceeeceEEEeC-CeeEEEEEecCCCCeeeEeeeecC-CeEE
Confidence 899998876643221 12223 7888885 454454444332233444444453 3454
|
| >d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: TM1225-like predicted glycosylases domain: Hypothetical protein TM1225 species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00031 Score=60.01 Aligned_cols=137 Identities=12% Similarity=0.035 Sum_probs=80.6
Q ss_pred cEEccCCeEEEeeecccCC-CCcEEEEEECCCCceeEEee-ceecCC------CCcceeeeeEEEcCCCeEEEEEeecCC
Q 020796 139 PILLENGLLLCGSSVESWN-SWGSWMEVTVDAGRSWRKYG-PIYIPN------ESLSVIQPVPFHTANRTLRVLMRSFNG 210 (321)
Q Consensus 139 ~~~~~~G~~~~~~~~~~~~-~~~~~~~~S~D~G~tW~~~~-~~~~~~------~~~~~~~~~~~~~~~G~l~~~~r~~~~ 210 (321)
.++..+|+.++....+..+ ...+.+++|.| |.+|+... ++..+. ...++..|.++..+ +.+++++.....
T Consensus 49 ~~i~~~g~~~ll~r~~~~~~~~~ig~A~S~D-Gi~w~~~~~pv~~p~~~~~~~~~~gv~DPrv~~~~-d~yym~yt~~~~ 126 (327)
T d1vkda_ 49 AVVPYNGEFVGVFRIDHKNTRPFLHFGRSKD-GINWEIEPEEIQWVDVNGEPFQPSYAYDPRVVKIE-DTYYITFCTDDH 126 (327)
T ss_dssp EEEEETTEEEEEEEEEETTSCEEEEEEEESS-SSSCEECSSCCCEECTTSCBCCCSSEEEEEEEEET-TEEEEEEEEESS
T ss_pred EEEEECCEEEEEEEecCCCCceEEEEEEcCC-ccCCEeCCCCeecCCCCCcccccCcEEcceEEEEC-CEEEEEEEecCC
Confidence 3444578876553333322 23577889987 78998643 332211 12244457787765 577777655443
Q ss_pred CCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEE--cCCCcEEEEEeCC-----CCCeEEEEEEcCCCCCCCcceee
Q 020796 211 IGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVK--LKDGRLLLAYNTV-----SRGVLKVALSKDDGDSWHDALTL 281 (321)
Q Consensus 211 ~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~--~~~g~~~lv~~~~-----~r~~l~~~~S~D~G~tW~~~~~l 281 (321)
...+.++.|.| +++|........+. .+-.++. ..+|+.+|++++. ....+.++.|.| +.+|.....+
T Consensus 127 ~~~i~lA~S~D-~~~w~k~g~~~~~~--~kd~~lfpeki~Gky~ml~Rp~~~~~~~~~~I~la~S~D-l~~W~~~~~v 200 (327)
T d1vkda_ 127 GPTIGVGMTKD-FKTFVRLPNAYVPF--NRNGVLFPRKINGKYVMLNRPSDNGHTPFGDIFLSESPD-MIHWGNHRFV 200 (327)
T ss_dssp SEEEEEEEESS-SSSEEEECCSSSSS--EEEEEECSSCBTTBEEEEEEECCSSSCSCCCEEEEEESS-SSCBEEEEEE
T ss_pred CcEEEEEEecC-cchheecCCccCcc--ccCceEeeeeccCeEEEEEeeccCCCcccceEEEEcCCC-ccccccccee
Confidence 34688899988 79998643321111 1111121 2368999988654 234578888864 8899876544
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=0.065 Score=44.04 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=100.4
Q ss_pred ccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCC-----------CCCCCCeEEEEeCCCc
Q 020796 26 SCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEP-----------NVPMWNPVLFKLPSNG 93 (321)
Q Consensus 26 ~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~-----------~~~~~~p~l~~~~~G~ 93 (321)
..|.|.|+... |+.+++.... +..+ .+.+.+|+|- +|+....+...+ ....+.|.+... +|+
T Consensus 9 ~ihDP~vi~~~-g~YY~~~t~~--~~~~--g~~i~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~g~ 82 (291)
T d1uv4a1 9 LLHDPTMIKEG-SSWYALGTGL--TEER--GLRVLKSSDAKNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYY-NGK 82 (291)
T ss_dssp ECSSCEEEEET-TEEEEEEECC--TTSS--BEEEEEESSSSSCEEEEEETSSCCGGGGGTSTTCCSBCEEEEEEEE-TTE
T ss_pred cccCCEEEEEC-CEEEEEEecC--CCCC--cEEEEECCCCCCCEECcccccCCcccccccCCccCCcccceEEEEE-CCE
Confidence 35889998774 7888754321 1112 3667788897 999754432111 124566887664 899
Q ss_pred EEEEEEecccc-CCceeEEEEecCC-CCCCCCCccCCC--CCCC--CCCCccEEccCCeEEEeeecccCCCCcEEEEEEC
Q 020796 94 LLLFYKIGQEV-QKWSGCMKRSYNK-GVTWSEREQLPP--GILG--PSKNKPILLENGLLLCGSSVESWNSWGSWMEVTV 167 (321)
Q Consensus 94 l~l~~~~~~~~-~~~~~~~~~S~D~-G~TWs~~~~l~~--~~~g--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~S~ 167 (321)
.+|+|...... ......++.|+|. ---|+.+..+.. ...+ .+-..++...||+.++.. ... ...+.+...+
T Consensus 83 yylyy~~~~~~~~~~~i~~a~s~~~~~Gpw~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Y~~~-~~~--~~~i~i~~l~ 159 (291)
T d1uv4a1 83 YWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAF-GSF--WSGIKLTKLD 159 (291)
T ss_dssp EEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEE-CBS--TTCEEEEEEC
T ss_pred EEEEEEecCCCCCcceEEEEEeCCCCCCCCCcCccccccccCCCCCccCceEEEecCCcEEEEe-ccc--CCceEEEeec
Confidence 99999863222 1223446677663 345886654321 1111 122334455678877653 211 1234454444
Q ss_pred CCCcee-EEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC---CC---CcEEEEEeccCCcCCCC
Q 020796 168 DAGRSW-RKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN---GI---GRVCMSESCDGGLTWSY 228 (321)
Q Consensus 168 D~G~tW-~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~---~~---~~~~~~~S~D~G~tWs~ 228 (321)
.+..+. .....+...+.....+| |.++. .+|.+++++.... +. ..+.+++|++----|+.
T Consensus 160 ~~~~~~~g~~~~i~~~~~~~~~~EgP~i~k-~~g~Yyl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~ 227 (291)
T d1uv4a1 160 KSTMKPTGSLYSIAARPNNGGALEAPTLTY-QNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLD 227 (291)
T ss_dssp TTTCSEEEEEEEEECCTTTTTCEEEEEEEE-ETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBC
T ss_pred cccccCcCceeEEEecCCCCccccccEEEE-ECCEEEEEEecCcccCCCCCCceeEEEEcCCCCCCCcc
Confidence 333222 22222222222233445 55665 4789888875432 11 24666777653334544
|
| >d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Endo-alpha-sialidase domain: Endo-alpha-sialidase species: Bacteriophage K1F [TaxId: 344021]
Probab=96.85 E-value=0.085 Score=42.93 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=47.0
Q ss_pred eeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeC-CC-CcCCcEEccC
Q 020796 13 EEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFK-DG-RWQSPIIADE 75 (321)
Q Consensus 13 ~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~-~G-tWs~~~~~~~ 75 (321)
|.-||+-.++|+..+....-+..=+.-+++-|.++.++|.....+...+|. || ||+.|+.+.+
T Consensus 69 qgel~kitdtp~ynaw~qdktfvyd~viyapfm~~drhgv~~lhvawvrsgddgqtws~pewlt~ 133 (516)
T d1v0ea1 69 QGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTD 133 (516)
T ss_dssp SEEEEECCCCSSEEECCTTCCEEETTEEEEEEEEESSSSSTTCEEEEEEESSTTSSCCCCEESSC
T ss_pred cceEEEeccCccccccccccceEeeeeeecccccccccccceeeEEEEEecCCCCcccChhhccc
Confidence 556788888887665544333344467888888888888888888888886 58 9999998875
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Probab=96.58 E-value=0.15 Score=42.28 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=95.7
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CCC-CCcEEEEEEeC--CCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EGA-PDVKIWLQTFK--DGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g~-~~~~i~~s~s~--~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
....+|.|... +|+.++.|..... .+. .+..+.+..++ .|.|+++..+.. ...+|.++.+.+|+++++|..
T Consensus 69 ~~~WAPev~~~-~G~yylyys~~~~~~~~~~~~~~~~~~sd~~~gp~~~~~~~~~----~~~dp~~f~d~dG~~Yl~~~~ 143 (322)
T d2exha2 69 GGVWAPHLSYS-DGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNS----SGFDPSLFHDEDGRKYLVNMY 143 (322)
T ss_dssp CBBCSCEEEEE-TTEEEEEEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCC----SCSCCEEEECTTSCEEEEEEE
T ss_pred CCcccceEEEE-CCEEEEEEEeecccCCCccccceEEEecCCCCCCcccceEecC----CCCCCCeEEEcCCCEEEEecc
Confidence 45678999875 5899987755332 222 23344555555 479998876532 234688888999999998875
Q ss_pred ccccC---Ccee-EEE-EecCCCCCCCCCccCCCCC-CCCCCCccEEccCCeEEEeeecc-cCCCCcEEEEEECCCCcee
Q 020796 101 GQEVQ---KWSG-CMK-RSYNKGVTWSEREQLPPGI-LGPSKNKPILLENGLLLCGSSVE-SWNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 101 ~~~~~---~~~~-~~~-~S~D~G~TWs~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~S~D~G~tW 173 (321)
..... .... .+. .+.|..+.-+++..+..+. ....+++.+...+|..++..... ......+.+++|++----|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~YYl~~s~~~~~~~y~v~~~rS~~~~GP~ 223 (322)
T d2exha2 144 WDHRVDHHPFYGIVLQEYSVEQKKLVGEPKIIFKGTDLRITEGPHLYKINGYYYLLTAEGGTRYNHAATIARSTSLYGPY 223 (322)
T ss_dssp ECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred cCCccCcCCccceEEeeecCcCCeECCCcEEEEEecCCCcccCcEEEEECCEEEEEEeCCCCCCCceEEEEEeCCCCccc
Confidence 32211 1111 122 2233322223333322211 11234444555688766553321 1234577889998755556
Q ss_pred EEee--ceecCC-----CCcceeeeeEEEcCCCeEEEEEee
Q 020796 174 RKYG--PIYIPN-----ESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 174 ~~~~--~~~~~~-----~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
+... ++.... ...+.-+.+++..++|+.++++..
T Consensus 224 ~~~~~~pi~~~~~~~~~~~~g~GH~~~v~~~dg~w~~~yh~ 264 (322)
T d2exha2 224 EVHPDNPLLTSWPYPRNPLQKAGHASIVHTHTDEWFLVHLT 264 (322)
T ss_dssp EECTTCCSEESTTCTTCSSEEEEEEEEEECTTSCEEEEEEE
T ss_pred ccCCCceEeccCCCCCCCccCCCeEEEEECCCCCEEEEEEE
Confidence 5422 232111 112333557788888888777643
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Probab=96.38 E-value=0.2 Score=41.34 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=93.0
Q ss_pred CccccceEEEecCCcEEEEEecCCC-CC-CCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEe
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSC-EG-APDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKI 100 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~-~g-~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~ 100 (321)
....+|.|... +|++++.|.+... .+ .....+.+..+++ |.|+.+..+.. ...+|.++.+.+|+.|++|..
T Consensus 69 ~~~WAP~v~~~-~G~~ylyy~~~~~~~~~~~~~~~~~~~a~~p~gp~~~~~~~~~----~~iDp~~f~D~dG~~Yl~~~~ 143 (317)
T d1yrza2 69 GGIWAPCLSYH-DGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNS----SGFDPSLFHDDDGRKWLVNMI 143 (317)
T ss_dssp CEECSCEEEEE-TTEEEEEEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEECCC----SCSCCEEEECTTSCEEEEEEE
T ss_pred ceeecceEEEE-CCEEEEEEEEeccCCCCcccceEEEEecCCCCCCccceeeecC----CccCCcEEEecCCCEEEEEec
Confidence 45677999865 5888887755332 22 2234455666654 68998876532 234699999999999999875
Q ss_pred cccc---CCcee-EEE-EecCCCCCCCCCccCCCCC-CCCCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCcee
Q 020796 101 GQEV---QKWSG-CMK-RSYNKGVTWSEREQLPPGI-LGPSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRSW 173 (321)
Q Consensus 101 ~~~~---~~~~~-~~~-~S~D~G~TWs~~~~l~~~~-~g~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~tW 173 (321)
.... ..... .+. .+.+....-.++..+..+. ....+++.+...+|..++...... .....+.+++|++----|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~g~yyl~~s~~~~~~~y~v~~~~s~~~~Gp~ 223 (317)
T d1yrza2 144 WDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPY 223 (317)
T ss_dssp ECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCCC
T ss_pred cCcCCCCccccceeeeecCcccCeEcCCceEEEeccCCCcccCceEEEECCEEEEEEccCCCCCcceEEEEEECCCCCcc
Confidence 3211 11111 122 2333332222222222221 122344445556887665433211 224567788887532234
Q ss_pred EEe--eceecCCC-----CcceeeeeEEEcCCCeEEEEEe
Q 020796 174 RKY--GPIYIPNE-----SLSVIQPVPFHTANRTLRVLMR 206 (321)
Q Consensus 174 ~~~--~~~~~~~~-----~~~~~~~~~~~~~~G~l~~~~r 206 (321)
+.. .++...+. ..+.-+.+++..++|+.++++.
T Consensus 224 ~~~~~~p~~~~~~~~~~~~~g~GH~s~~~~~dG~~~~~~h 263 (317)
T d1yrza2 224 ETDPSYPLVTSTGQPELALQKAGHGSLVETQNGEWYLAHL 263 (317)
T ss_dssp EECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEE
T ss_pred ccCCCcceeccCCCCcCCcccCCccEEEECCCCeEEEEEE
Confidence 332 23321111 1233355778888888777654
|
| >d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Endo-1,5-arabinanase species: Bacillus subtilis [TaxId: 1423]
Probab=96.06 E-value=0.11 Score=42.52 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=79.1
Q ss_pred eeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccC-C---------CCCCCCcee--EEEcCCCcEEEEEeC
Q 020796 190 QPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPT-Q---------LLNPNSGID--GVKLKDGRLLLAYNT 257 (321)
Q Consensus 190 ~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~-~---------~~~~~~~~~--~~~~~~g~~~lv~~~ 257 (321)
.|.++.. +|+.+++.........+.+..|+| -.+|+..-.. . .+.....+. -+...+|+.+|.|..
T Consensus 12 DP~vi~~-~g~YY~~~t~~~~~~g~~i~~S~D-L~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~~~g~yylyy~~ 89 (291)
T d1uv4a1 12 DPTMIKE-GSSWYALGTGLTEERGLRVLKSSD-AKNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYYNGKYWLYYSV 89 (291)
T ss_dssp SCEEEEE-TTEEEEEEECCTTSSBEEEEEESS-SSSCEEEEEETSSCCGGGGGTSTTCCSBCEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEE-CCEEEEEEecCCCCCcEEEEECCC-CCCCEECcccccCCcccccccCCccCCcccceEEEEECCEEEEEEEe
Confidence 4666654 689998875443334577778887 7889752110 0 011111221 133357999998853
Q ss_pred C----CCCeEEEEEEcCC-CCCCCcceeecc-cC--CCceeceEEEEccCCeEEEEEEeCCCeeEEEEeCCC
Q 020796 258 V----SRGVLKVALSKDD-GDSWHDALTLEE-NL--AMEFSYPAVIQASDGSVHITYTYNRTQIKHVVLLPN 321 (321)
Q Consensus 258 ~----~r~~l~~~~S~D~-G~tW~~~~~l~~-~~--~~~~~yp~~~~~~dg~l~v~y~~~~~~i~~~~~~~~ 321 (321)
. .+..+.++.|.|. ...|+.+..+.. .. ....--|.+...+||+.|++|......|+.++++++
T Consensus 90 ~~~~~~~~~i~~a~s~~~~~Gpw~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Y~~~~~~~~~i~i~~l~~~ 161 (291)
T d1uv4a1 90 SSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSFWSGIKLTKLDKS 161 (291)
T ss_dssp CCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBSTTCEEEEEECTT
T ss_pred cCCCCCcceEEEEEeCCCCCCCCCcCccccccccCCCCCccCceEEEecCCcEEEEecccCCceEEEeeccc
Confidence 2 2345677788763 335887654321 11 112234788887889999999988889999988763
|
| >d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Exo-inulinase species: Aspergillus awamori [TaxId: 105351]
Probab=95.47 E-value=0.51 Score=39.63 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=78.3
Q ss_pred EEEecCCcEEEEEecCCC-CCCCCcEEEEEEeCCC-CcCC-cEEccCCCC-----CCCCCeEEEEeCC----------Cc
Q 020796 32 IVEVDKGHFLVAYFGGSC-EGAPDVKIWLQTFKDG-RWQS-PIIADEEPN-----VPMWNPVLFKLPS----------NG 93 (321)
Q Consensus 32 l~~~~~g~l~~~~~~~~~-~g~~~~~i~~s~s~~G-tWs~-~~~~~~~~~-----~~~~~p~l~~~~~----------G~ 93 (321)
|+.. +|+.+++|.-... ...+.+.---++|+|- +|+. |..+.+... ......+.+.+.+ ..
T Consensus 26 l~y~-~G~yHlFyQ~nP~~~~~g~~~WgHa~S~DLv~W~~~p~al~p~~~~~d~~~~~~SGsav~~~~~~~~~~~~g~~~ 104 (353)
T d1y4wa2 26 LLYH-NGTYHLFFQYNPGGIEWGNISWGHAISEDLTHWEEKPVALLARGFGSDVTEMYFSGSAVADVNNTSGFGKDGKTP 104 (353)
T ss_dssp EEEE-TTEEEEEEEECTTCSSSCSCEEEEEEESSSSSCEEEEEEECCBTTTSCCCBEEEEEEEEECTTCTTSCCCSSSCC
T ss_pred ceEE-CCEEEEEEecCCCCCCCCCeEEEEEEeccccceeECCccccCCccCcCCCCccccCceEecCCCccccccCCCce
Confidence 5554 6899987633221 1123444456779998 9996 444443211 1112223333322 25
Q ss_pred EEEEEEeccc------------cCCceeEEEEecCCCCCCCCCcc---CCCC-CCC------CCCCccEEc-cCC-eEEE
Q 020796 94 LLLFYKIGQE------------VQKWSGCMKRSYNKGVTWSEREQ---LPPG-ILG------PSKNKPILL-ENG-LLLC 149 (321)
Q Consensus 94 l~l~~~~~~~------------~~~~~~~~~~S~D~G~TWs~~~~---l~~~-~~g------~~~~~~~~~-~~G-~~~~ 149 (321)
|+++|+.... .+....+++.|+|+|.+|.+... |.+. ..+ ..+.+-+.. .++ .+++
T Consensus 105 l~~~YT~~~~~~~~~~~~~~~~~~~~~q~~A~s~d~g~~~~~~~~~npvi~~~~~~~~~~~~~fRDP~V~~~~~~~~~~~ 184 (353)
T d1y4wa2 105 LVAMYTSYYPVAQTLPSGQTVQEDQQSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKWVV 184 (353)
T ss_dssp EEEEEEEEESSCEECTTSCEECTTEEEEEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEEEETTTTEEEE
T ss_pred EEEEEeeeecccccccCcccccCCcEEEEEEEECCCCcceEEecCCCeEecCCCCCCcccccccCCCceEEECCCCEEEE
Confidence 7888874211 01123468999999999975421 2111 111 112222322 233 3333
Q ss_pred eeecccCCCCcEEEEEECCCCceeEEeeceecCCCCcceee-eeEEEc
Q 020796 150 GSSVESWNSWGSWMEVTVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHT 196 (321)
Q Consensus 150 ~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~ 196 (321)
...... ...+.++.|+ +..+|+...++...+..-...| |.++.+
T Consensus 185 ~~~~~~--~g~v~ly~S~-Dl~~W~~~g~l~~~~~~g~~wECPdlf~l 229 (353)
T d1y4wa2 185 VTSIAE--LHKLAIYTSD-NLKDWKLVSEFGPYNAQGGVWECPGLVKL 229 (353)
T ss_dssp EEEEGG--GTEEEEEEES-SSSSCEEEEEECCCSCCSSEEEEEEEEEE
T ss_pred EEeecC--CCeEEEEecC-CCCceEEeccccccCCCCcceeeeEEEEe
Confidence 322211 2245666675 5799998775532222112333 566665
|
| >d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Beta-fructosidase (invertase), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.64 Score=37.93 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=83.9
Q ss_pred EccCCeEEEeeeccc----CCCCcEEEEEECCCCceeEEeeceecCC-CCcceeeeeEEEcCCCeEEEEEeec----C--
Q 020796 141 LLENGLLLCGSSVES----WNSWGSWMEVTVDAGRSWRKYGPIYIPN-ESLSVIQPVPFHTANRTLRVLMRSF----N-- 209 (321)
Q Consensus 141 ~~~~G~~~~~~~~~~----~~~~~~~~~~S~D~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~G~l~~~~r~~----~-- 209 (321)
+..+|+..+...... +....-..++|+| ..+|+.......+. +..++.-.+++. .+|++++++... .
T Consensus 22 ~~~~G~yHlfyQ~~P~~~~~g~~~WgHa~S~D-lv~W~~~~~al~p~~d~~g~~sGsav~-~~g~~~~~yT~~~~~~~~~ 99 (294)
T d1uypa2 22 IFWKGKYHMFYQYNPRKPEWGNICWGHAVSDD-LVHWRHLPVALYPDDETHGVFSGSAVE-KDGKMFLVYTYYRDPTHNK 99 (294)
T ss_dssp EEETTEEEEEEEEETTSSSSCSCEEEEEEESS-SSSCEEEEEEECCSSTTEEEEEEEEEE-ETTEEEEEEEEEECCCSSC
T ss_pred eEECCEEEEEEecCCCCCCCCCcEEEEEEeCC-cCCeEECCcccccccCCCCeEEEEEEe-cCCeEEEEEEEeeCCCCCC
Confidence 345787655421111 1122233456665 79999875332232 234455555554 578888876422 1
Q ss_pred CC-CcEEEEEeccCCcCCCCCccCC-CCC-CCCc------eeEEEcCCCcEEEEEeC---CCCCeEEEEEEcCCCCCCCc
Q 020796 210 GI-GRVCMSESCDGGLTWSYAKPTQ-LLN-PNSG------IDGVKLKDGRLLLAYNT---VSRGVLKVALSKDDGDSWHD 277 (321)
Q Consensus 210 ~~-~~~~~~~S~D~G~tWs~~~~~~-~~~-~~~~------~~~~~~~~g~~~lv~~~---~~r~~l~~~~S~D~G~tW~~ 277 (321)
+. ..+.++.|.| |.+|++..... +.. +... +.+.. .+|+.+|+... ..++.+.++.|. |.++|+.
T Consensus 100 ~~~~~~~~a~s~d-g~~w~k~~~npvi~~~~~~~~~~fRDP~V~~-~~g~w~M~~g~~~~~~~G~i~ly~S~-Dl~~W~~ 176 (294)
T d1uypa2 100 GEKETQCVVMSEN-GLDFVKYDGNPVISKPPEEGTHAFRDPKVNR-SNGEWRMVLGSGKDEKIGRVLLYTSD-DLFHWKY 176 (294)
T ss_dssp CCEEEEEEEEESS-SSCCEECTTCCSBCSCSSTTEEEEEEEEEEE-ETTEEEEEEEEEETTTEEEEEEEEES-SSSSEEE
T ss_pred cceeeeEEEECCC-CCceEeecCCceecCCCccCccccCCCcccc-cCCEEEEEEEeeecCCccEEEEEEcC-CccceeE
Confidence 11 1345566655 99998643211 111 1111 22333 57888887642 133456677776 5899988
Q ss_pred ceeecccC-CCceeceEEEEccCCeEEEEEE
Q 020796 278 ALTLEENL-AMEFSYPAVIQASDGSVHITYT 307 (321)
Q Consensus 278 ~~~l~~~~-~~~~~yp~~~~~~dg~l~v~y~ 307 (321)
...+.... ....-=|.+..+.+. -+++|.
T Consensus 177 ~g~l~~~~~~~~~ECPdlf~l~~~-~vl~~s 206 (294)
T d1uypa2 177 EGAIFEDETTKEIECPDLVRIGEK-DILIYS 206 (294)
T ss_dssp EEEEEEETTCSCEEEEEEEEETTE-EEEEEE
T ss_pred eccceeCCCCCceeeceEEEeCCe-eEEEEE
Confidence 77664422 122344788887553 334443
|
| >d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Geobacillus stearothermophilus [TaxId: 1422]
Probab=94.71 E-value=0.89 Score=37.31 Aligned_cols=218 Identities=15% Similarity=0.135 Sum_probs=111.8
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC----------CCCCCCCCeEEEEeCCCcEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE----------EPNVPMWNPVLFKLPSNGLLL 96 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~----------~~~~~~~~p~l~~~~~G~l~l 96 (321)
..|+|+... ++.++.... .+..+. +.+.+|+|. +|+....+.. ......+.|.+... +|+.+|
T Consensus 12 aDP~v~~~~-~~yY~~~tt--~~~~~g--~~i~~S~DLv~W~~~g~~~~~~~~~~~~~~~~~~~~WAPev~~~-~G~yyl 85 (322)
T d2exha2 12 PDPSICRVG-DDYYIAVST--FEWFPG--VRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGVWAPHLSYS-DGKFWL 85 (322)
T ss_dssp CSCEEEEET-TEEEEEECC--BTEESB--CEEEEESSSSSCEEEECCBCSTTTCCCTTCCTTCBBCSCEEEEE-TTEEEE
T ss_pred CCCEEEEEC-CEEEEEEcC--CCCCCC--cEEEECCCcCCcEEcccccccccccccCCCcccCCcccceEEEE-CCEEEE
Confidence 468998776 567764322 122222 455688888 9986543211 01124678988664 899999
Q ss_pred EEEecccc-CCc---eeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeec-ccC-C-CC--cEEEE-EE
Q 020796 97 FYKIGQEV-QKW---SGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSV-ESW-N-SW--GSWME-VT 166 (321)
Q Consensus 97 ~~~~~~~~-~~~---~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~-~~~-~-~~--~~~~~-~S 166 (321)
+|...... +.+ ...+..|++-.-.|+.+..+.... +....++..||++++.... ... . .. .+.+. .+
T Consensus 86 yys~~~~~~~~~~~~~~~~~~sd~~~gp~~~~~~~~~~~---~dp~~f~d~dG~~Yl~~~~~~~~~~~~~~~~~~~~~~~ 162 (322)
T d2exha2 86 IYTDVKVVEGQWKDGHNYLVTCDTIDGAWSDPIYLNSSG---FDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQEYS 162 (322)
T ss_dssp EEEEECCCSSSCCCEEEEEEEESSTTSCCCCCEECCCSC---SCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEEEE
T ss_pred EEEeecccCCCccccceEEEecCCCCCCcccceEecCCC---CCCCeEEEcCCCEEEEecccCCccCcCCccceEEeeec
Confidence 98753221 111 234556665445687776553221 2233456678998764321 110 0 11 12222 23
Q ss_pred CCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC--CCCCCC-
Q 020796 167 VDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT--QLLNPN- 238 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~--~~~~~~- 238 (321)
.|..+.-..+..+ ..+......| |.++. .+|.+++++.... ....+.+++|++----|+... ++ ....+.
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~~Egp~i~k-~~g~YYl~~s~~~~~~~y~v~~~rS~~~~GP~~~~~~~pi~~~~~~~~~ 240 (322)
T d2exha2 163 VEQKKLVGEPKII-FKGTDLRITEGPHLYK-INGYYYLLTAEGGTRYNHAATIARSTSLYGPYEVHPDNPLLTSWPYPRN 240 (322)
T ss_dssp TTTTEEEEEEEEE-ECCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEESTTCTTC
T ss_pred CcCCeECCCcEEE-EEecCCCcccCcEEEE-ECCEEEEEEeCCCCCCCceEEEEEeCCCCcccccCCCceEeccCCCCCC
Confidence 3333332222211 1222223334 45554 5689888875432 234677888887655665321 11 101111
Q ss_pred ----Cce-eEEEcCCCcEEEEEe
Q 020796 239 ----SGI-DGVKLKDGRLLLAYN 256 (321)
Q Consensus 239 ----~~~-~~~~~~~g~~~lv~~ 256 (321)
.++ .++...+|+.+++|.
T Consensus 241 ~~~g~GH~~~v~~~dg~w~~~yh 263 (322)
T d2exha2 241 PLQKAGHASIVHTHTDEWFLVHL 263 (322)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEE
T ss_pred CccCCCeEEEEECCCCCEEEEEE
Confidence 112 356667899999884
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.55 E-value=0.96 Score=36.95 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=111.8
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-C---------CCCCCCCeEEEEeCCCcEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-E---------PNVPMWNPVLFKLPSNGLLL 96 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~---------~~~~~~~p~l~~~~~G~l~l 96 (321)
-.|+|+.. +|+.+++.... +..+. |.+.+|+|- +|+....+.. . .....+.|.+... +|+.+|
T Consensus 11 aDP~v~~~-~~~yY~~~tt~--~~~~g--i~i~~S~DLv~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~g~yyl 84 (321)
T d1y7ba2 11 PDPSICRA-DTDYYIATSTF--EWFPG--VQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYH-DGKFWL 84 (321)
T ss_dssp CSCEEEEE-TTEEEEEECCB--TEESB--CEEEEESSSSSCEEEECSBCSTTTCCCTTCCTTCEECSCEEEEE-TTEEEE
T ss_pred CCCEEEEE-CCEEEEEEecC--CCCCC--eEEEECCCccCCEEccccccCCcccccCCCcccCcccCceEEEE-CCEEEE
Confidence 46898876 47777754221 11122 455688887 9987543321 1 1124778988764 899999
Q ss_pred EEEecccc-CC---ceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeecc--c-C-CC-CcEEEEEEC
Q 020796 97 FYKIGQEV-QK---WSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVE--S-W-NS-WGSWMEVTV 167 (321)
Q Consensus 97 ~~~~~~~~-~~---~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~--~-~-~~-~~~~~~~S~ 167 (321)
+|...... +. ....+..|++---.|+.+..+... .+....+...+|+.++..... . . .. ....+....
T Consensus 85 yys~~~~~~~~~~~~~~~~a~a~~p~Gp~~~~~~~~~~---~~D~~~~~d~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (321)
T d1y7ba2 85 IYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGS---GFDASLFHDNDGKKYLVNMYWDQRTYNHNFYGIVLQEYS 161 (321)
T ss_dssp EEEEESCCSSSCCCEEEEEEEESSTTSCCCCCEECCCS---CSCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEEEE
T ss_pred EEEeeccCCCCccceeeEeeecCCCCCCcccceeeccc---ccCCcEEEEcCCCEEEEEeccCCCccccCccceeeEeeC
Confidence 88863221 11 123466777666677766554321 122334566678876543211 1 0 11 133444445
Q ss_pred CCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCCCc--cC--CCCCCCC-
Q 020796 168 DAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSYAK--PT--QLLNPNS- 239 (321)
Q Consensus 168 D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~~~--~~--~~~~~~~- 239 (321)
++..+..........+......| |.++. .+|.+++++.... ....+.+++|++----|.... ++ ....+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Egp~v~k-~~g~yyl~~s~~~~~~~y~~~~~rs~~~~Gp~~~~~~~p~~~~~~~~~~~ 240 (321)
T d1y7ba2 162 DKEKKLIGKAKIIYKGTDIKYTEGPHIYH-IGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRNS 240 (321)
T ss_dssp TTTTEEEEEEEEEECCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEECTTCTTCS
T ss_pred CCcceEcCCceEEeeccCCCccccceEEE-ECCEEEEEEcCCCCCCCcceEEEEEcccCCccccCCCCceeeeecCCCCC
Confidence 55555543322222222222234 45554 5677777764432 234577777766433443211 11 0001111
Q ss_pred ----c-eeEEEcCCCcEEEEEe
Q 020796 240 ----G-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 240 ----~-~~~~~~~~g~~~lv~~ 256 (321)
+ ..++..++|+.++++.
T Consensus 241 ~~g~GH~~~v~~~~g~~~~~~h 262 (321)
T d1y7ba2 241 LQKCGHASLVHTHTDEWYLAHL 262 (321)
T ss_dssp SEEEEEEEEEECTTSCEEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEE
Confidence 1 2346667899999874
|
| >d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.04 E-value=1.2 Score=36.23 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCccccceEEEecCCcEEEEEecCCC-CC-CCCcEEEEEEeCC--CCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEE
Q 020796 24 FKSCHASTIVEVDKGHFLVAYFGGSC-EG-APDVKIWLQTFKD--GRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYK 99 (321)
Q Consensus 24 ~~~~~~p~l~~~~~g~l~~~~~~~~~-~g-~~~~~i~~s~s~~--GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~ 99 (321)
.....+|.|... +|+.++.|..... .+ ..+..+.++++++ |.|+.+..+.. ...+|.++.+.+|+.+++|.
T Consensus 67 ~~~~WAP~v~~~-~g~yylyys~~~~~~~~~~~~~~~~a~a~~p~Gp~~~~~~~~~----~~~D~~~~~d~dg~~~~~~~ 141 (321)
T d1y7ba2 67 SGGIWAPDLSYH-DGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNG----SGFDASLFHDNDGKKYLVNM 141 (321)
T ss_dssp TCEECSCEEEEE-TTEEEEEEEEESCCSSSCCCEEEEEEEESSTTSCCCCCEECCC----SCSCCEEEECTTSCEEEEEE
T ss_pred cCcccCceEEEE-CCEEEEEEEeeccCCCCccceeeEeeecCCCCCCcccceeecc----cccCCcEEEEcCCCEEEEEe
Confidence 355788999875 5898887755332 12 2345677777774 68988775532 23568888999999999876
Q ss_pred ecccc---CCc-eeEEEEecCCCCCC-CCCccCCCCCCC-CCCCccEEccCCeEEEeeeccc-CCCCcEEEEEECCCCce
Q 020796 100 IGQEV---QKW-SGCMKRSYNKGVTW-SEREQLPPGILG-PSKNKPILLENGLLLCGSSVES-WNSWGSWMEVTVDAGRS 172 (321)
Q Consensus 100 ~~~~~---~~~-~~~~~~S~D~G~TW-s~~~~l~~~~~g-~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~S~D~G~t 172 (321)
..... ... ...+....+...+. +++..+.....+ ..+++.+.-.+|..++...... .....+.+++|++----
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~yyl~~s~~~~~~~y~~~~~rs~~~~Gp 221 (321)
T d1y7ba2 142 YWDQRTYNHNFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGP 221 (321)
T ss_dssp EECCCTTSCSEEEEEEEEEETTTTEEEEEEEEEECCCTTCCCEEEEEEEETTEEEEEEEESCSSTTCEEEEEEESSTTCC
T ss_pred ccCCCccccCccceeeEeeCCCcceEcCCceEEeeccCCCccccceEEEECCEEEEEEcCCCCCCCcceEEEEEcccCCc
Confidence 42211 111 12233333333333 223322222111 1233334445776555433211 22456778888864333
Q ss_pred eEEee--ceecC---C--CCcceeeeeEEEcCCCeEEEEEee
Q 020796 173 WRKYG--PIYIP---N--ESLSVIQPVPFHTANRTLRVLMRS 207 (321)
Q Consensus 173 W~~~~--~~~~~---~--~~~~~~~~~~~~~~~G~l~~~~r~ 207 (321)
|.... ++... + ...+.-+.+++..++|+.++++..
T Consensus 222 ~~~~~~~p~~~~~~~~~~~~~g~GH~~~v~~~~g~~~~~~h~ 263 (321)
T d1y7ba2 222 YEIDPEYPLLTSWHDPRNSLQKCGHASLVHTHTDEWYLAHLV 263 (321)
T ss_dssp CEECTTCCSEECTTCTTCSSEEEEEEEEEECTTSCEEEEEEE
T ss_pred cccCCCCceeeeecCCCCCcccCCEEEEEECCCCCEEEEEEe
Confidence 44321 22111 1 112233457777888887777643
|
| >d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Beta-D-xylosidase N-terminal domain species: Bacillus halodurans [TaxId: 86665]
Probab=92.60 E-value=2.1 Score=34.71 Aligned_cols=218 Identities=14% Similarity=0.125 Sum_probs=106.3
Q ss_pred ccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-C---------CCCCCCCeEEEEeCCCcEEE
Q 020796 28 HASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-E---------PNVPMWNPVLFKLPSNGLLL 96 (321)
Q Consensus 28 ~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~---------~~~~~~~p~l~~~~~G~l~l 96 (321)
..|.|+... |+.++.. . +.+..+. |.+.+|+|. +|+....+.. . .....+.|.+... +|+.+|
T Consensus 12 aDP~vi~~~-~~yY~~~-t-t~~~~~g--i~i~~S~DLv~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~G~~yl 85 (317)
T d1yrza2 12 PDPSIVRVG-DDYYIAT-S-TFEWFPG--VRIHHSRDLKHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCLSYH-DGTFYL 85 (317)
T ss_dssp CSCEEEEET-TEEEEEE-C-CBTEESB--CEEEEESSSSSCEEEECSBCSTTTCCCTTCCTTCEECSCEEEEE-TTEEEE
T ss_pred CCCEEEEEC-CEEEEEE-c-cCCCCCC--eEEEECCCCCCCeECCccccCccccccCCCcccceeecceEEEE-CCEEEE
Confidence 468998776 5676542 2 1111222 455688898 9986543321 1 1123567887654 899999
Q ss_pred EEEeccc-cCC---ceeEEEEecCCCCCCCCCccCCCCCCCCCCCccEEccCCeEEEeeeccc--C-CCC--cEEEE-EE
Q 020796 97 FYKIGQE-VQK---WSGCMKRSYNKGVTWSEREQLPPGILGPSKNKPILLENGLLLCGSSVES--W-NSW--GSWME-VT 166 (321)
Q Consensus 97 ~~~~~~~-~~~---~~~~~~~S~D~G~TWs~~~~l~~~~~g~~~~~~~~~~~G~~~~~~~~~~--~-~~~--~~~~~-~S 166 (321)
+|..... .+. ....+..|++--..|+.+..+.... +-...+...||+.++...... . ... ...+. .+
T Consensus 86 yy~~~~~~~~~~~~~~~~~~~a~~p~gp~~~~~~~~~~~---iDp~~f~D~dG~~Yl~~~~~~~~~~~~~~~~~~~~~~~ 162 (317)
T d1yrza2 86 IYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSSG---FDPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQEYS 162 (317)
T ss_dssp EEEEEEECSSSCCEEEEEEEEESSSSSCCCCCEECCCSC---SCCEEEECTTSCEEEEEEEECCCTTSCSEEEEEEEEEE
T ss_pred EEEEeccCCCCcccceEEEEecCCCCCCccceeeecCCc---cCCcEEEecCCCEEEEEeccCcCCCCccccceeeeecC
Confidence 8875321 111 1223455555445687776543211 223344556888765422111 0 111 12222 23
Q ss_pred CCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEeecC--CCCcEEEEEeccCCcCCCC--CccC--CCCCC--
Q 020796 167 VDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRSFN--GIGRVCMSESCDGGLTWSY--AKPT--QLLNP-- 237 (321)
Q Consensus 167 ~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~~~--~~~~~~~~~S~D~G~tWs~--~~~~--~~~~~-- 237 (321)
.+..+.=.....+ ..+......| |.++. .+|.+++++.... ....+.+++|++---.|+. ..++ ....+
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~~Egp~i~k-~~g~yyl~~s~~~~~~~y~v~~~~s~~~~Gp~~~~~~~p~~~~~~~~~~ 240 (317)
T d1yrza2 163 EAEQKLVGPVKNI-YKGTDIQLTEGPHLYK-KDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQPEL 240 (317)
T ss_dssp TTTTEEEEEEEEE-ECCCTTCCCEEEEEEE-ETTEEEEEEEESCSSTTCEEEEEEESSTTCCCEECTTCCSEECTTCTTC
T ss_pred cccCeEcCCceEE-EeccCCCcccCceEEE-ECCEEEEEEccCCCCCcceEEEEEECCCCCccccCCCcceeccCCCCcC
Confidence 4443322222211 2222223344 44444 5789888775442 2345777888753223432 1111 00001
Q ss_pred ---CCc-eeEEEcCCCcEEEEEe
Q 020796 238 ---NSG-IDGVKLKDGRLLLAYN 256 (321)
Q Consensus 238 ---~~~-~~~~~~~~g~~~lv~~ 256 (321)
..+ ..++..++|+.++++.
T Consensus 241 ~~~g~GH~s~~~~~dG~~~~~~h 263 (317)
T d1yrza2 241 ALQKAGHGSLVETQNGEWYLAHL 263 (317)
T ss_dssp SSEEEEEEEEEECTTSCEEEEEE
T ss_pred CcccCCccEEEECCCCeEEEEEE
Confidence 111 2355667899888874
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.70 E-value=2.9 Score=34.33 Aligned_cols=251 Identities=12% Similarity=0.013 Sum_probs=108.6
Q ss_pred eEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCCCcCCcEEccCCCCCCCCCeEEEEeCCCcEEEEEEeccccCCceeE
Q 020796 31 TIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDGRWQSPIIADEEPNVPMWNPVLFKLPSNGLLLFYKIGQEVQKWSGC 110 (321)
Q Consensus 31 ~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~GtWs~~~~~~~~~~~~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~ 110 (321)
..+.+.+|+++++ .+.. ... +.+--....+|++. ...+. ....+..+...||+++++-............
T Consensus 80 ~~~~~~~g~i~v~--Gg~~--~~~--~~~yd~~~~~w~~~---~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v 149 (387)
T d1k3ia3 80 GISMDGNGQIVVT--GGND--AKK--TSLYDSSSDSWIPG---PDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNG 149 (387)
T ss_dssp EEEECTTSCEEEE--CSSS--TTC--EEEEEGGGTEEEEC---CCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred EEEEecCCcEEEe--ecCC--Ccc--eeEecCccCccccc---ccccc-cccccceeeecCCceeeecccccccccccee
Confidence 4566788888865 2211 112 22212223588652 22121 1223455667899998874321111111112
Q ss_pred EEEecCCCCCCCCCccCCCCC------CCC--CCCc--cEEccCCeEEEeeecccCCCCcEEEEEECCCCceeEEeecee
Q 020796 111 MKRSYNKGVTWSEREQLPPGI------LGP--SKNK--PILLENGLLLCGSSVESWNSWGSWMEVTVDAGRSWRKYGPIY 180 (321)
Q Consensus 111 ~~~S~D~G~TWs~~~~l~~~~------~g~--~~~~--~~~~~~G~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~ 180 (321)
..+. -...+|+....+.... .+. .... .+...+|+++... +....+...+-.-..|.......
T Consensus 150 ~~yd-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~ 222 (387)
T d1k3ia3 150 EVYS-PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG------PSTAMNWYYTSGSGDVKSAGKRQ 222 (387)
T ss_dssp EEEE-TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC------SSSEEEEEECSTTCEEEEEEECE
T ss_pred eeec-CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEec------CcCCcEEecCcccCcEeeccccc
Confidence 2232 2346786432221110 000 0111 2344567665531 11223334444445676543221
Q ss_pred cC----CCCcceeeeeEEEcCCCeEEEEEeecCC-----CCcEEEEEeccCC---cCCCCCccCCCCCCCCceeEEEcCC
Q 020796 181 IP----NESLSVIQPVPFHTANRTLRVLMRSFNG-----IGRVCMSESCDGG---LTWSYAKPTQLLNPNSGIDGVKLKD 248 (321)
Q Consensus 181 ~~----~~~~~~~~~~~~~~~~G~l~~~~r~~~~-----~~~~~~~~S~D~G---~tWs~~~~~~~~~~~~~~~~~~~~~ 248 (321)
.. +... +....+....+|+++++.-.... ........-.+.. .+|+... .++.+.....++.+.+
T Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~r~~~~~~~~~d 299 (387)
T d1k3ia3 223 SNRGVAPDAM-CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFHTSVVLPD 299 (387)
T ss_dssp ETTEECCCCB-TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSCEEEECTT
T ss_pred cCcccCcccc-cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc--ccccccccceeeeccC
Confidence 11 1111 11123344567888776533211 1122222222211 2343322 2344544556677789
Q ss_pred CcEEEEEeCC------CCC---eEEEEEEcCCCCCCCcceeecccCCCceeceEEEEccCCeEEEEE
Q 020796 249 GRLLLAYNTV------SRG---VLKVALSKDDGDSWHDALTLEENLAMEFSYPAVIQASDGSVHITY 306 (321)
Q Consensus 249 g~~~lv~~~~------~r~---~l~~~~S~D~G~tW~~~~~l~~~~~~~~~yp~~~~~~dg~l~v~y 306 (321)
|+++++.... ... ...++ +-...+|+....+... .+.+...+.+.||+++|+=
T Consensus 300 g~i~v~GG~~~~~~~~~~~~~~~ve~Y--dp~~~~W~~~~~~~~~---R~~Hs~a~l~~dG~v~v~G 361 (387)
T d1k3ia3 300 GSTFITGGQRRGIPFEDSTPVFTPEIY--VPEQDTFYKQNPNSIV---RVYHSISLLLPDGRVFNGG 361 (387)
T ss_dssp SCEEEECCBSBCCTTCCCSBCCCCEEE--EGGGTEEEECCCCSSC---CCTTEEEEECTTSCEEEEE
T ss_pred CeEEEECCcccCccCCCCcEeceEEEE--ECCCCeEEECCCCCCc---ccceEEEEECCCCEEEEEe
Confidence 9988885421 111 11222 2245578766433321 2334455566899988763
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Probab=90.31 E-value=3.7 Score=33.03 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=94.1
Q ss_pred CccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccC-C-----------CCCCCCCeEEEEeCC
Q 020796 25 KSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADE-E-----------PNVPMWNPVLFKLPS 91 (321)
Q Consensus 25 ~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~-~-----------~~~~~~~p~l~~~~~ 91 (321)
.++|.|+|+... |+.++. ..+ +. |.+.+|+|. +|+....+.+ . .....+.|.+... +
T Consensus 22 ~~~~DP~i~~~~-g~yY~~-~t~-----~g--i~i~~S~DL~nW~~~g~~l~~~~~~~~~~~~~~~~~~~WAP~v~~~-~ 91 (312)
T d1wl7a1 22 LWAHDPVIAKEG-SRWYVF-HTG-----SG--IQIKTSEDGVHWENMGRVFPSLPDWCKQYVPEKDEDHLWAPDICFY-N 91 (312)
T ss_dssp CBCSSCEEEEET-TEEEEE-ESE-----ET--CEEEEESSSSEEEEEEESCSSCCTTHHHHCTTCCSCEEEEEEEEEE-T
T ss_pred cCcCCCEEEEEC-CEEEEE-Eec-----CC--ceEEEcCCCCCceECcccccCCcccccccCCcccCCceEcceEEEe-C
Confidence 577899999764 788863 221 12 456778886 9997665422 1 1234566887664 7
Q ss_pred CcEEEEEEeccccCC-ceeEEEEe-----cCCCCCCCCCccCC--CCC--CCCCCCccEEccCCeEEEeeecccCCCCcE
Q 020796 92 NGLLLFYKIGQEVQK-WSGCMKRS-----YNKGVTWSEREQLP--PGI--LGPSKNKPILLENGLLLCGSSVESWNSWGS 161 (321)
Q Consensus 92 G~l~l~~~~~~~~~~-~~~~~~~S-----~D~G~TWs~~~~l~--~~~--~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 161 (321)
|+.+|+|+....... ....+..+ ++--..|+.+..+. ... ...+-...+...+|+.++..... ...+
T Consensus 92 g~yyl~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iD~~~f~d~dG~~y~~~~~~---~~~i 168 (312)
T d1wl7a1 92 GIYYLYYSVSTFGKNTSVIGLATNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSF---WSGI 168 (312)
T ss_dssp TEEEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBS---TTCE
T ss_pred CEEEEEEEeecCCcccceeeEEEEecccCCCCccccccccceecCCCCCCCCcCCCceeEccCCcEEEeecCC---CCce
Confidence 999999886332211 11222222 12223444433221 111 11122234455678876653221 1123
Q ss_pred EEEE-ECCCCceeEEeeceec--CCCCcceee-eeEEEcCCCeEEEEEeecC------CCCcEEEEEeccCCcCCCC
Q 020796 162 WMEV-TVDAGRSWRKYGPIYI--PNESLSVIQ-PVPFHTANRTLRVLMRSFN------GIGRVCMSESCDGGLTWSY 228 (321)
Q Consensus 162 ~~~~-S~D~G~tW~~~~~~~~--~~~~~~~~~-~~~~~~~~G~l~~~~r~~~------~~~~~~~~~S~D~G~tWs~ 228 (321)
.+.. +.|....+.....+.. .+......| |.++. .+|..++++.... ....+.+++|++----|+.
T Consensus 169 ~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~EgP~v~k-~~g~yYl~ys~~~~~~~~~~~~~~~~a~s~~~~GP~~~ 244 (312)
T d1wl7a1 169 QLIQLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVC-RNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYVD 244 (312)
T ss_dssp EEEEBCTTTCSBCTTCCCEEEECCSSSSCCEEEEEEEE-ETTEEEEEEEESCCSSGGGCCCEEEEEEESSTTCCCBC
T ss_pred eEEEEcCcCCcCcCCceEEEecccCCCCCcccccEEEE-ECCcEEEEEecCCCcCCCCCCceEEEEecCCCCccccc
Confidence 3333 4444433332222211 111123334 56665 4688888775321 1235777888775555554
|
| >d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Glycosyl hydrolases family 32 N-terminal domain domain: Exo-inulinase species: Aspergillus awamori [TaxId: 105351]
Probab=89.47 E-value=3.2 Score=34.43 Aligned_cols=70 Identities=17% Similarity=0.378 Sum_probs=41.9
Q ss_pred EEEEEECCCCceeEEee---ceec-CCC--C---cceeeeeEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCcc
Q 020796 161 SWMEVTVDAGRSWRKYG---PIYI-PNE--S---LSVIQPVPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKP 231 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~~---~~~~-~~~--~---~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~ 231 (321)
..+++|.|+|.+|.+.. ++.. ++. . .....|.++..+++..+++.......+.+.+..|.| ..+|+....
T Consensus 132 q~~A~s~d~g~~~~~~~~~npvi~~~~~~~~~~~~~fRDP~V~~~~~~~~~~~~~~~~~~g~v~ly~S~D-l~~W~~~g~ 210 (353)
T d1y4wa2 132 QSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDESQKWVVVTSIAELHKLAIYTSDN-LKDWKLVSE 210 (353)
T ss_dssp EEEEEESSTTSSCEECTTTCCSBCSCCTTCGGGTTSEEEEEEEEETTTTEEEEEEEEGGGTEEEEEEESS-SSSCEEEEE
T ss_pred EEEEEECCCCcceEEecCCCeEecCCCCCCcccccccCCCceEEECCCCEEEEEEeecCCCeEEEEecCC-CCceEEecc
Confidence 46789999999998753 2321 111 1 234568887666655444332222235677788877 799986433
|
| >d2b4wa1 b.67.2.5 (A:2-311) Hypothetical protein LmjF10.1260 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: LmjF10.1260-like domain: Hypothetical protein LmjF10.1260 species: Leishmania major [TaxId: 5664]
Probab=88.34 E-value=3.2 Score=33.65 Aligned_cols=158 Identities=12% Similarity=-0.017 Sum_probs=82.7
Q ss_pred cCCeEEEeeecccCCCC-cEEE-EEECCCCceeEEeeceecCCCCcceeeeeEEEcCCCeEEEEEeec-CCCCcEEEEEe
Q 020796 143 ENGLLLCGSSVESWNSW-GSWM-EVTVDAGRSWRKYGPIYIPNESLSVIQPVPFHTANRTLRVLMRSF-NGIGRVCMSES 219 (321)
Q Consensus 143 ~~G~~~~~~~~~~~~~~-~~~~-~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~r~~-~~~~~~~~~~S 219 (321)
-+|+.++....|....+ ...+ +.|..++..|+... ...+++-.|.+... +|++++..... .....+..+++
T Consensus 38 ~~Gk~~l~~RvE~rd~~s~s~v~lf~~~g~~~f~~~~-----~p~~glEDPrvt~i-~g~lv~~~t~~~~~~~~~~~~~t 111 (310)
T d2b4wa1 38 YKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFTAVP-----ELSWELEDPYIAKI-NNEMIFGGTRVRKNGNAILSYYG 111 (310)
T ss_dssp ETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEEECT-----TCCBSCEEEEEEEE-TTEEEEEEEEEC-----CCCEEE
T ss_pred ECCEEEEEEEEEccCcceEEEEEEEEecCCcceEECC-----cccccCCCCCEEeE-CCEEEEEEEEecCCCCcceEEEe
Confidence 47898887666653331 2233 34777778887542 22356666877776 57877655322 11122223344
Q ss_pred ccCCcCCCCCccC--CCCCCCCceeEEEcCCCcEEEEEeCC--CCCeEEEEEEcCCCCCCCcceeeccc------CCCce
Q 020796 220 CDGGLTWSYAKPT--QLLNPNSGIDGVKLKDGRLLLAYNTV--SRGVLKVALSKDDGDSWHDALTLEEN------LAMEF 289 (321)
Q Consensus 220 ~D~G~tWs~~~~~--~~~~~~~~~~~~~~~~g~~~lv~~~~--~r~~l~~~~S~D~G~tW~~~~~l~~~------~~~~~ 289 (321)
.| -++|....+. ..|...-.+.+..+.+|+++|..+++ .+..+.++++.| =..|....++... ....-
T Consensus 112 ~~-~r~~~~~l~~f~~gp~~~Kdi~L~e~~dGKy~~ftRP~~g~~g~Ig~~~~d~-l~~~t~e~I~~a~~~~~~~~~~~G 189 (310)
T d2b4wa1 112 YF-YRGTPDELTYFTRGPGCMKDIRVLQLQDGRLGVFSRPRVGRKASIGFVILNS-IDELGAEVIAKAPPLDILSENAWG 189 (310)
T ss_dssp EE-EEEETTEEEEEEECCTTCCCCEEEECTTSCEEEEECCCC---CCEEEEEESC-GGGCSHHHHHTCCEESCC--CEEE
T ss_pred ee-eecchhcCceeecCCCccccEEeEEeeCCEEEEEEccccCCCCeeEEEEeCC-hhhCCHHHhhcCcccCccccceec
Confidence 44 4556532111 01222222455778899999998875 456678887754 3457654332211 00111
Q ss_pred eceEEEEccCCeEEEEEEe
Q 020796 290 SYPAVIQASDGSVHITYTY 308 (321)
Q Consensus 290 ~yp~~~~~~dg~l~v~y~~ 308 (321)
+-|....+++|.|+|+|..
T Consensus 190 ~g~~p~~t~~Gwl~~i~Hg 208 (310)
T d2b4wa1 190 GVNQAYLLSSGKVGCIGHY 208 (310)
T ss_dssp EEEEEEEETTSCEEEEEEE
T ss_pred CCcCceECCCCeEEEEEeE
Confidence 2344455688888776643
|
| >d2b4wa1 b.67.2.5 (A:2-311) Hypothetical protein LmjF10.1260 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: LmjF10.1260-like domain: Hypothetical protein LmjF10.1260 species: Leishmania major [TaxId: 5664]
Probab=87.46 E-value=5.5 Score=32.24 Aligned_cols=85 Identities=12% Similarity=-0.028 Sum_probs=50.6
Q ss_pred eeeeeeEEecCCCCCCCccccceEEEecCCcEEEEEecCCCCCCCCcEEEEEEeCCC-CcCCcEEccCCCCCCCCCeEEE
Q 020796 9 GLVAEEFTFPANSAPFKSCHASTIVEVDKGHFLVAYFGGSCEGAPDVKIWLQTFKDG-RWQSPIIADEEPNVPMWNPVLF 87 (321)
Q Consensus 9 ~~~~~~~~f~~~~~~~~~~~~p~l~~~~~g~l~~~~~~~~~~g~~~~~i~~s~s~~G-tWs~~~~~~~~~~~~~~~p~l~ 87 (321)
+...+.+.|+--... .. =+|+.....+|+.+++...+.........|.+..+.++ .|. +.+.|.....+|.+.
T Consensus 13 i~~~~~l~F~gv~~~-DV-yN~~apf~~~Gk~~l~~RvE~rd~~s~s~v~lf~~~g~~~f~----~~~~p~~glEDPrvt 86 (310)
T d2b4wa1 13 VYESVLLTFKGVDGY-DV-YNCSVPFSYKGKTHIYGRVEKRDIWAASHVRLFEETGKDEFT----AVPELSWELEDPYIA 86 (310)
T ss_dssp CSEEEECEEESCTTC-EE-ESCCCCEEETTEEEEEEEEECTTCSSCCEEEEEEEEETTEEE----ECTTCCBSCEEEEEE
T ss_pred cceeeEEEEeccCCc-ce-ecCCcEEEECCEEEEEEEEEccCcceEEEEEEEEecCCcceE----ECCcccccCCCCCEE
Confidence 445566677765322 22 24554335568998888665444444566776556666 443 223355567789887
Q ss_pred EeCCCcEEEEEEe
Q 020796 88 KLPSNGLLLFYKI 100 (321)
Q Consensus 88 ~~~~G~l~l~~~~ 100 (321)
.. +|++++.++.
T Consensus 87 ~i-~g~lv~~~t~ 98 (310)
T d2b4wa1 87 KI-NNEMIFGGTR 98 (310)
T ss_dssp EE-TTEEEEEEEE
T ss_pred eE-CCEEEEEEEE
Confidence 65 7888877664
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.18 E-value=5.3 Score=30.93 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=49.5
Q ss_pred eEEEcCCCeEEEEEeecCCCCcEEEEEeccCCcCCCCCccCCCCCCCCceeEEEcCCCcEEEEEeCCCCCeEEEEEEcCC
Q 020796 192 VPFHTANRTLRVLMRSFNGIGRVCMSESCDGGLTWSYAKPTQLLNPNSGIDGVKLKDGRLLLAYNTVSRGVLKVALSKDD 271 (321)
Q Consensus 192 ~~~~~~~G~l~~~~r~~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~~~g~~~lv~~~~~r~~l~~~~S~D~ 271 (321)
.++..++|++++..... ..++. ...|+...+.... .....+..+...++|.+++.-.. .. .+..-..+
T Consensus 144 ~i~~~~~g~~~v~~~~~---~~i~~-~d~~~~~~~~~~~----~~~~~p~gi~~d~~g~l~vsd~~--~~--~i~~~~~~ 211 (260)
T d1rwia_ 144 GVAVDNSGNVYVTDTDN---NRVVK-LEAESNNQVVLPF----TDITAPWGIAVDEAGTVYVTEHN--TN--QVVKLLAG 211 (260)
T ss_dssp EEEECTTCCEEEEEGGG---TEEEE-ECTTTCCEEECCC----SSCCSEEEEEECTTCCEEEEETT--TT--EEEEECTT
T ss_pred eeeecCCCCEeeecccc---ccccc-cccccceeeeeec----cccCCCccceeeeeeeeeeeecC--CC--EEEEEeCC
Confidence 34556788876654332 34443 3344332222111 11112233445567887666422 22 23322333
Q ss_pred CCCCCcceeecccCCCceeceE-EEEccCCeEEEEEEeCCCeeEEE
Q 020796 272 GDSWHDALTLEENLAMEFSYPA-VIQASDGSVHITYTYNRTQIKHV 316 (321)
Q Consensus 272 G~tW~~~~~l~~~~~~~~~yp~-~~~~~dg~l~v~y~~~~~~i~~~ 316 (321)
+... ..+.. ....+|. |....+|.|||+ ..++++|+.+
T Consensus 212 ~~~~---~~~~~---~~~~~P~~i~~d~~g~l~va-d~~~~rI~~i 250 (260)
T d1rwia_ 212 STTS---TVLPF---TGLNTPLAVAVDSDRTVYVA-DRGNDRVVKL 250 (260)
T ss_dssp CSCC---EECCC---CSCCCEEEEEECTTCCEEEE-EGGGTEEEEE
T ss_pred CCeE---EEEcc---CCCCCeEEEEEeCCCCEEEE-ECCCCEEEEE
Confidence 3321 11111 1345775 556678888887 4445677754
|
| >d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: Levansucrase domain: Levansucrase species: Bacillus subtilis [TaxId: 1423]
Probab=86.01 E-value=9.3 Score=32.57 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=28.1
Q ss_pred EEEEEECCCCceeEEeeceecCCCCcceee-eeEEEcCCCeEEEEEee
Q 020796 161 SWMEVTVDAGRSWRKYGPIYIPNESLSVIQ-PVPFHTANRTLRVLMRS 207 (321)
Q Consensus 161 ~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~G~l~~~~r~ 207 (321)
+.+++..++...|+...++..........| |.++.. +|..++++-.
T Consensus 280 I~l~~~s~D~~~We~~~pLl~a~~v~d~~ErP~I~~~-nGKYYLFtss 326 (440)
T d1oyga_ 280 LGMIELNDDYTLKKVMKPLIASNTVTDEIERANVFKM-NGKWYLFTDS 326 (440)
T ss_dssp EEEEEECTTSSEEEEEEEEEECTTTCSCCEEEEEEEE-TTEEEEEEEE
T ss_pred EEEEEeCCCcccceecCcceeccCCCCeEECCEEEEE-CCEEEEEEec
Confidence 445665667789998776643222223333 667654 7998887643
|
| >d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Arabinanase/levansucrase/invertase family: alpha-L-arabinanase-like domain: Arabinanase-TS species: Bacillus thermodenitrificans [TaxId: 33940]
Probab=82.06 E-value=11 Score=30.07 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=93.6
Q ss_pred CCCCeEEEEeCCCcEEEEEEeccccCCceeEEEEecCCCCCCCCCccCCCCC-------------CCCCCCccEEccCCe
Q 020796 80 PMWNPVLFKLPSNGLLLFYKIGQEVQKWSGCMKRSYNKGVTWSEREQLPPGI-------------LGPSKNKPILLENGL 146 (321)
Q Consensus 80 ~~~~p~l~~~~~G~l~l~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~-------------~g~~~~~~~~~~~G~ 146 (321)
...+|.++.. +|+.+++.+ +. ...+.+|+| ..+|+....+.+.. .+... +-+.-.+|+
T Consensus 23 ~~~DP~i~~~-~g~yY~~~t-~~-----gi~i~~S~D-L~nW~~~g~~l~~~~~~~~~~~~~~~~~~~WA-P~v~~~~g~ 93 (312)
T d1wl7a1 23 WAHDPVIAKE-GSRWYVFHT-GS-----GIQIKTSED-GVHWENMGRVFPSLPDWCKQYVPEKDEDHLWA-PDICFYNGI 93 (312)
T ss_dssp BCSSCEEEEE-TTEEEEEES-EE-----TCEEEEESS-SSEEEEEEESCSSCCTTHHHHCTTCCSCEEEE-EEEEEETTE
T ss_pred CcCCCEEEEE-CCEEEEEEe-cC-----CceEEEcCC-CCCceECcccccCCcccccccCCcccCCceEc-ceEEEeCCE
Confidence 4567988775 788777532 21 234778876 68998765543210 00011 123345788
Q ss_pred EEEeeeccc--CCCCcEEEEEEC-----CCCceeEEeeceecC--CCCcceeeeeEEEcCCCeEEEEEeecCCCCcEEEE
Q 020796 147 LLCGSSVES--WNSWGSWMEVTV-----DAGRSWRKYGPIYIP--NESLSVIQPVPFHTANRTLRVLMRSFNGIGRVCMS 217 (321)
Q Consensus 147 ~~~~~~~~~--~~~~~~~~~~S~-----D~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~G~l~~~~r~~~~~~~~~~~ 217 (321)
+++...... .......+..+. +--..|+...++... ......+.+.++...+|+.++++.... ..+++.
T Consensus 94 yyl~~t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~iD~~~f~d~dG~~y~~~~~~~--~~i~~~ 171 (312)
T d1wl7a1 94 YYLYYSVSTFGKNTSVIGLATNRTLDPRDPDYEWKDMGPVIHSTASDNYNAIDPNVVFDQEGQPWLSFGSFW--SGIQLI 171 (312)
T ss_dssp EEEEEEECCTTCCCEEEEEEEESCSCTTSTTCCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBST--TCEEEE
T ss_pred EEEEEEeecCCcccceeeEEEEecccCCCCccccccccceecCCCCCCCCcCCCceeEccCCcEEEeecCCC--CceeEE
Confidence 655432211 111122232221 122456665543221 222345667888889999988875532 345544
Q ss_pred E-eccCCcCCCCCccCCCCC---C---CCceeEEEcCCCcEEEEEeCC-------CCCeEEEEEEcCCCCCCC
Q 020796 218 E-SCDGGLTWSYAKPTQLLN---P---NSGIDGVKLKDGRLLLAYNTV-------SRGVLKVALSKDDGDSWH 276 (321)
Q Consensus 218 ~-S~D~G~tWs~~~~~~~~~---~---~~~~~~~~~~~g~~~lv~~~~-------~r~~l~~~~S~D~G~tW~ 276 (321)
+ +.|..+.......+..+. . ..+..+.. .+|+.+|++... ....+.++.|++--..|+
T Consensus 172 ~l~~d~~~~~~~~~~i~~~~~~~~~~~~EgP~v~k-~~g~yYl~ys~~~~~~~~~~~~~~~~a~s~~~~GP~~ 243 (312)
T d1wl7a1 172 QLDTETMKPAAQAELLTIASRGEEPNAIEAPFIVC-RNGYYYLFVSFDFCCRGIESTYKIAVGRSKDITGPYV 243 (312)
T ss_dssp EBCTTTCSBCTTCCCEEEECCSSSSCCEEEEEEEE-ETTEEEEEEEESCCSSGGGCCCEEEEEEESSTTCCCB
T ss_pred EEcCcCCcCcCCceEEEecccCCCCCcccccEEEE-ECCcEEEEEecCCCcCCCCCCceEEEEecCCCCcccc
Confidence 4 445444444433321111 0 11234444 578999987421 234567788875433454
|