Citrus Sinensis ID: 020813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK
Secondary Structure (PSIPRED)
cEEcccccccccccccccccccccccccEEEEEcccccEEEEEEccccccccccccHHHHcccccEEEEccccccEEEEEcHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHccccccHHHHccccccccccccccccEEEEEEcccccEEEcccHHHHHHHHHHHcccccccccccccccccccccccEEccccEEccccEEccccEEccccEEEcEEEccccEEccccEEEccEEccccEEccccEEcccEEccccEEccccEEccEEEccccEEccccEEcccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEcccccEEEEEccHHHHHccccccHHHHHHcccEEEEccccccEEEEccHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccEEEEEEEcccccEEEEEccHHHHHHHHHHHHHHccHcccccccccccccccccEEccccEEcccEEEccccEEcccEEEEEEEEccccEEcccEEEEEEEEEccEEEcccEEEEEEEEEccEEEcccEEEEEEEEcccEEEcccccccccEEccccc
Coil and Loop (DISEMBL)
micsvpvsglseagssgakdktkkpgryniigmdptKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKseilingapqgqqakengndkvSYRIlanastpsfhelyalgpngsapvrrthKCCVYIASNSKYCVRLNSIQAFMDINRDVIGeanhlsgynfsaqnniihpsaelgskttvgphcmlgegsqmgdkcsvkrsvigrhcrigsNVKVVNSVVMNHVtigdgcsiqgsvicsnAQLQERVAlkdcqvgqgyvvsagceykgeslarkek
Flexible Loop (DISEMBL)
micsvpvsglseagssgakdktkkpgryniigmdptKQFLLHIATgaelekdtriRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILingapqgqqakengNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGrhcrigsnvKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVvsagceykgeslarkek
Low Complexity Region (SEG)
MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSnvkvvnsvvmnhvTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK
Disordered region (IsUnstruct)
***************************YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILIN****************SYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEY**********
Disordered Region (DISOPRED)
MICSVPV*********************NIIGMDPTKQFLLHIATGA******RIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA****
Disordered Region (DISEMBL)
**********************KKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK*********
Disordered Region (DISPRO)
*****PVSGLS*************PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLK**********************S*******STPSF************PVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q54FQ8	440	Translation initiation fa	yes	no	0.847	0.618	0.304	1e-35
P70541	452	Translation initiation fa	yes	no	0.903	0.641	0.307	5e-33
Q4R6T3	452	Translation initiation fa	N/A	no	0.872	0.619	0.327	1e-32
Q9NR50	452	Translation initiation fa	yes	no	0.872	0.619	0.317	2e-30
A5PJI7	452	Translation initiation fa	yes	no	0.872	0.619	0.304	1e-28
P56288	458	Probable translation init	yes	no	0.803	0.563	0.246	2e-23
P32501	712	Translation initiation fa	yes	no	0.411	0.185	0.293	2e-11
P09032	578	Translation initiation fa	no	no	0.426	0.237	0.293	1e-10
P87163	732	Translation initiation fa	N/A	no	0.370	0.162	0.288	6e-10
Q8CHW4	717	Translation initiation fa	no	no	0.286	0.128	0.347	3e-09

>sp|Q54FQ8|EI2BG_DICDI Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 159/292 (54%), Gaps = 20/292 (6%)

Query: 6   PVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVG 64
           P   + + G    +  TK+   + + I ++   Q ++ +    E+E+D    KS+L+   
Sbjct: 149 PTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQKIVMMEPATEVEEDLNFNKSLLKYFP 208

Query: 65  QMDIRADLMDAHMYAFNRSVLQEVL-DQKDK---FQSLKQDVLPYLVRSQLKSEILINGA 120
            + I  +L D  +Y F+R VL  ++ DQK+K   F  +K+ ++PYL+  Q+ +       
Sbjct: 209 NVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPLFFDIKKHLIPYLLSCQIPNIKRKRAL 268

Query: 121 PQGQQAKENGNDKVSYRILANASTP--SFHELYALGPNGSAPVRRTHKCCVYIASNSKYC 178
           P    +  N N  +S + +++ ++P   F EL       +A   +T KC  ++     YC
Sbjct: 269 PA---SAFNQNQTLS-QTMSSTTSPFDQFSEL-------NAQKNKTIKCFAHLLKKEGYC 317

Query: 179 VRLNSIQAFMDINRDVI-GEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQM 237
           + +N+I+ +  INRD+  G+  +L     S +N  I P+A + + T VGP C++G  + +
Sbjct: 318 MNVNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFIDPTANV-TITQVGPQCVIGTSTTL 376

Query: 238 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQ 289
           G KCSVK S+IG+HC+IG  V++ NS++M+HV I D C I  S+IC++  ++
Sbjct: 377 GAKCSVKFSIIGKHCKIGDGVRIENSIIMDHVIIEDRCVINSSIICNDVYIK 428

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Dictyostelium discoideum (taxid: 44689)

>sp|P70541|EI2BG_RAT Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 22/312 (7%)

Query: 17  GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
           G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++  +  L+DAH
Sbjct: 144 GQKGKKKTVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIHFQTGLVDAH 203

Query: 77  MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
           +Y   + V+  +++ K    S++ +++PYLVR Q  S      + Q Q+ KE    K   
Sbjct: 204 LYCLKKYVVDFLMENK-SITSIRSELIPYLVRKQFSSA----SSQQRQEDKEEDLKKKEP 258

Query: 137 RILANASTPSFHELYALGPNGSA--PVRRTH---------KCCVYIASNSKYCVRLNSIQ 185
           + L   S         L P  +     RR           +C V+I      C R++++ 
Sbjct: 259 KSLDIYSFIKKDNTLTLAPYDACWNAFRRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLG 317

Query: 186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
            +M+ NR V    + L       + ++IHPSA++ +K  +G   ++G  +Q+G+K S+KR
Sbjct: 318 LYMEANRQVPKLLSVLC-----PEESMIHPSAQIANKHLIGADSLIGSDTQVGEKSSIKR 372

Query: 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
           SVIG  C I   V V N ++MN VT+ +G SI GSVIC+NA ++    ++DC +G G  +
Sbjct: 373 SVIGSSCVIRDRVTVTNCLLMNSVTVEEGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRI 432

Query: 306 SAGCEYKGESLA 317
            A  +   E + 
Sbjct: 433 EAKAKRMNEVIV 444

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q4R6T3|EI2BG_MACFA Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 159/302 (52%), Gaps = 22/302 (7%)

Query: 17  GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
           G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++    DL+DAH
Sbjct: 144 GQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKYPRIRFHTDLVDAH 203

Query: 77  MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVS- 135
           +Y   + V+ + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K   
Sbjct: 204 LYCLKKYVV-DFLMENGSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKEL 258

Query: 136 -----YRILANASTPSFHELYAL-----GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
                Y  L  A+T +     A      G       R   +C V+I      C R++++ 
Sbjct: 259 KSLDIYSFLKEANTLNLAPYDACWNACRGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLG 317

Query: 186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
            +M+ NR V      LS      +  ++H SA++ SK  VG   ++G  +Q+G+K S+KR
Sbjct: 318 LYMEANRQV---PKLLSA--LCPEEPLVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKR 372

Query: 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
           SVIG  C I   V + N ++MN VT+ +G +IQGSVIC+NA +++   +KDC +G G  +
Sbjct: 373 SVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRI 432

Query: 306 SA 307
            A
Sbjct: 433 EA 434

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Macaca fascicularis (taxid: 9541)

>sp|Q9NR50|EI2BG_HUMAN Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 157/302 (51%), Gaps = 22/302 (7%)

Query: 17  GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
           G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH
Sbjct: 144 GQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIRFHTGLVDAH 203

Query: 77  MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVS- 135
           +Y   + ++ + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K   
Sbjct: 204 LYCLKKYIV-DFLMENGSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKEL 258

Query: 136 -----YRILANASTPSFHELYAL-----GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
                Y  +  A+T +     A      G       R   +C V+I      C R++++ 
Sbjct: 259 KSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLG 317

Query: 186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
            +M+ NR V      LS      +   +H SA++ SK  VG   ++G  +Q+G+K S+KR
Sbjct: 318 LYMEANRQV---PKLLSA--LCPEEPPVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKR 372

Query: 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
           SVIG  C I   V + N ++MN VT+ +G +IQGSVIC+NA +++   +KDC +G G  +
Sbjct: 373 SVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRI 432

Query: 306 SA 307
            A
Sbjct: 433 EA 434

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Homo sapiens (taxid: 9606)

>sp|A5PJI7|EI2BG_BOVIN Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 160/302 (52%), Gaps = 22/302 (7%)

Query: 17  GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
           G K K K   + + +G+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH
Sbjct: 145 GQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEELIIKGSILQKHPRIRFHTGLVDAH 204

Query: 77  MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGN----- 131
           +Y   + V+  +++ K    S++ +++PYLVR Q  S      + QGQ+ KE        
Sbjct: 205 LYCLKKYVVDFLMENK-SITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKEL 259

Query: 132 ---DKVSYRILANASTPSFHEL---YALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
              D  S+   AN  T + ++       G +     R   +C V+I      C R++++ 
Sbjct: 260 KSLDIYSFIKEANTLTLAPYDTCWNACRGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLG 318

Query: 186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
            +M+ NR V    + L       + ++IH SA++ SK  VG   ++G  +Q+G+K S+K 
Sbjct: 319 LYMEANRQV----SKLLPV-ICPEESLIHSSAQIVSKHMVGADSLIGPDTQVGEKSSIKH 373

Query: 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
           SVIG  C I   V V N ++MN VT+ +G +IQ S+IC++A +++   +K+C +G G  +
Sbjct: 374 SVIGSSCVIRDRVTVTNCLLMNSVTVEEGSNIQSSIICNDAVIEKGADIKNCLIGSGQRI 433

Query: 306 SA 307
            A
Sbjct: 434 EA 435

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Bos taurus (taxid: 9913)

>sp|P56288|EI2BG_SCHPO Probable translation initiation factor eIF-2B subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif223 PE=1 SV=2

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 146/292 (50%), Gaps = 34/292 (11%)

Query: 30  IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVL 89
           +IG++     LL+  + A++  D   R S+L    ++ +  +L DAH++ F   V+ +++
Sbjct: 195 LIGIEEKTSRLLYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWVI-DLI 253

Query: 90  DQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE 149
            +K+   S++ D++PYLV+ Q +    +         +EN        I    S+P+  +
Sbjct: 254 REKESISSIRGDLIPYLVKCQYQKSFTV---------REN--------IQRFLSSPNNID 296

Query: 150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQ 209
            Y  G +      +  K    IA +   C R N++  + ++N+ +            + +
Sbjct: 297 NYDGGLSS-----QEIKINALIAKDGIICSRANNLPNYFELNKCIA---------KLTPE 342

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHV 269
             ++     +  +  VG  CM+ EG+ + D  ++K+S+IG++C IG  V V NS++M+++
Sbjct: 343 QRLV--DVTVSERALVGADCMVNEGTTIKDNSNIKKSIIGKNCVIGKGVVVSNSILMDNI 400

Query: 270 TIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            + DG  ++  ++ S AQ+  +  L++C++G  + V AG   +GE L   EK
Sbjct: 401 VVEDGVRLESCIVASGAQIGAKSKLRECEIGVDHRVEAGRIARGERLVDMEK 452

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32501|EI2BE_YEAST Translation initiation factor eIF-2B subunit epsilon OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD6 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 169 VYIASNSKYCVRLNSIQAFMDINRDVIG--------EANHLSGYNFSAQNNIIHPSAE-- 218
           +Y     +Y VR+ S Q +  I++D +G        ++N      +S ++  I+   +  
Sbjct: 273 IYAYLTDEYAVRVESWQTYDTISQDFLGRWCYPLVLDSNIQDDQTYSYESRHIYKEKDVV 332

Query: 219 LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ 278
           L     +G    +G G+++G+   ++ SVIGR+C+IG N+++ NS + +   IG+   I 
Sbjct: 333 LAQSCKIGKCTAIGSGTKIGEGTKIENSVIGRNCQIGENIRIKNSFIWDDCIIGNNSIID 392

Query: 279 GSVICSNAQLQERVALKD-CQVG 300
            S+I SNA L   V L D C +G
Sbjct: 393 HSLIASNATLGSNVRLNDGCIIG 415

Acts as a catalytic component of the translation initiation factor 2B (eIF2-B or GCD complex), which catalyzes the exchange of eukaryotic initiation factor 2 (eIF-2)-bound GDP for GTP and is regulated by phosphorylated eIF-2. It activates the synthesis of GCN4 in yeast under amino acid starvation conditions by suppressing the inhibitory effects of multiple AUG codons present in the leader of GCN4 mRNA. It may promote either repression or activation of GCN4 expression depending on amino acid availability. GCD6 and GCD7 repress GCN4 expression at the translational level by ensuring that ribosomes which have translated UORF1 will reinitiate at UORF2, -3, or -4 and thus fail to reach the GCN4 start site.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P09032|EI2BG_YEAST Translation initiation factor eIF-2B subunit gamma OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD1 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 169 VYIASNSKYCVRLNSIQAFMDINRDVIG-EANHLSGYNFSAQNNIIHPSAELGSKTTVGP 227
           ++I  N    +R N++ A+MD NR V+  ++  +   N   Q      SA +G+   V P
Sbjct: 383 IFILPNETLFIRANNLNAYMDANRFVLKIKSQTMFTKNIQIQ------SAAIGADAIVDP 436

Query: 228 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ 287
            C      Q+    +VK SV+G    IGS  +V  S++   V +GD   ++  +I   A+
Sbjct: 437 KC------QISAHSNVKMSVLGTQANIGSRCRVAGSLLFPGVHLGDEVILENCIIGPMAK 490

Query: 288 LQERVALKDCQVGQGYVVSAGCEYKGESLA 317
           +  +  L +C +   YVV     +KGE+LA
Sbjct: 491 IGSKCKLSNCYIEGHYVVEPKNNFKGETLA 520

Acts as essential component of the translation initiation factor 2B (eIF2-B or GCD complex), which catalyzes the exchange of eukaryotic initiation factor 2 (eIF-2)-bound GDP for GTP and is regulated by phosphorylated eIF-2. It activates the synthesis of GCN4 in yeast under amino acid starvation conditions by suppressing the inhibitory effects of multiple AUG codons present in the leader of GCN4 mRNA. It may promote either repression or activation of GCN4 expression depending on amino acid availability. GCD1 stabilizes the interaction between eIF-2 and GCD6 and stimulates the catalytic activity in vitro.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P87163|EI2BE_CANAL Translation initiation factor eIF-2B subunit epsilon OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GCD6 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 23/142 (16%)

Query: 170 YIASNS-KYCVRLNSIQAFMDINRDVIG--------EANHLSGYNFSAQNN--------I 212
           YI+ +S +Y  R+ S   +  I++D++         ++N + G ++S + N        I
Sbjct: 276 YISKDSSEYAARVESWSTYDAISQDILARWCYPLVPDSNLVEGNSYSYELNNIYKEDKII 335

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           +  S ++G+ T++G +  +GEG+Q      +K SVIGR+C IG NV + NS + ++  I 
Sbjct: 336 LAQSCKIGTSTSIGRNSSVGEGTQ------IKNSVIGRNCTIGKNVVIENSYIWDNAVIK 389

Query: 273 DGCSIQGSVICSNAQLQERVAL 294
           D   +  S++ ++AQ+   V L
Sbjct: 390 DNSVLNRSIVAADAQIGNNVTL 411

Subunit of the guanine nucleotide exchange factor for eIF-2.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q8CHW4|EI2BE_MOUSE Translation initiation factor eIF-2B subunit epsilon OS=Mus musculus GN=Eif2b5 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%)

Query: 204 YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS 263
           Y  S  N    P   LG  + +  + +LG G+ +G  CS+  SVIG +C IG NV +  +
Sbjct: 331 YTHSRHNIYRGPEVSLGHGSVLEENVLLGAGTVIGSNCSITNSVIGPNCHIGDNVVLDQA 390

Query: 264 VVMNHVTIGDGCSIQGSVICSNAQLQERVALK 295
            +   V +  G  I  S++C  A+++ERV LK
Sbjct: 391 YLWQGVRVAAGAQIHQSLLCDRAEVKERVKLK 422

Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
255564468	384	translation initiation factor eif-2b gam	0.990	0.828	0.808	1e-154
224103999	458	predicted protein [Populus trichocarpa]	0.981	0.687	0.782	1e-149
296088193	638	unnamed protein product [Vitis vinifera]	0.990	0.498	0.796	1e-145
359494464	463	PREDICTED: translation initiation factor	0.990	0.686	0.796	1e-145
296082668	461	unnamed protein product [Vitis vinifera]	0.990	0.689	0.796	1e-145
359497208	384	PREDICTED: translation initiation factor	0.990	0.828	0.796	1e-145
356525249	459	PREDICTED: translation initiation factor	0.984	0.688	0.764	1e-143
449452670	461	PREDICTED: translation initiation factor	0.990	0.689	0.750	1e-140
357518837	565	Translation initiation factor eIF-2B sub	0.975	0.553	0.746	1e-139
356512489	468	PREDICTED: translation initiation factor	0.993	0.681	0.729	1e-138

>gi|255564468|ref|XP_002523230.1| translation initiation factor eif-2b gamma subunit, putative [Ricinus communis] gi|223537526|gb|EEF39151.1| translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/329 (80%), Positives = 293/329 (89%), Gaps = 11/329 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CS PV G +E+GSS AKDK KKP RYNIIG+D +KQFLLHIATGAE+EKD  I+K+IL
Sbjct: 59  MLCSAPVGGPAESGSSSAKDKIKKPRRYNIIGLDHSKQFLLHIATGAEVEKDILIQKNIL 118

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAVGQM+IR+DLMDAHMYAF RSVLQEVL++KD+FQSLKQDVLPYLVRSQL+SE+L+NG 
Sbjct: 119 RAVGQMEIRSDLMDAHMYAFKRSVLQEVLNEKDRFQSLKQDVLPYLVRSQLRSEVLLNGV 178

Query: 121 PQGQQAKENGNDKVSYR--------ILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           PQ   A+ENGNDKVS +        IL NAS PSFHE YALG + S+ +RRTHKCC YIA
Sbjct: 179 PQ---AEENGNDKVSSQNNQAMVSQILINASMPSFHEPYALGHHDSSTLRRTHKCCAYIA 235

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
           SNSKYC RLNSIQAF DINRDVIGEANHLSGY+FSA NNIIHPSA+LGSKTTVGPHCMLG
Sbjct: 236 SNSKYCARLNSIQAFSDINRDVIGEANHLSGYSFSAHNNIIHPSAQLGSKTTVGPHCMLG 295

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV+MNHVT+GDGCSIQGSVICSN QLQERV
Sbjct: 296 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVIMNHVTVGDGCSIQGSVICSNVQLQERV 355

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            LKDCQVG G+VV+AGCEYKGESLARKEK
Sbjct: 356 VLKDCQVGAGFVVTAGCEYKGESLARKEK 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103999|ref|XP_002313277.1| predicted protein [Populus trichocarpa] gi|222849685|gb|EEE87232.1| predicted protein [Populus trichocarpa]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 288/327 (88%), Gaps = 12/327 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CS PVSG +E+GSSG KDK KKP R+NIIG+DP+KQFLLHIATGAE+EK+ RI+KSIL
Sbjct: 136 MLCSAPVSGPTESGSSGGKDKIKKPRRHNIIGLDPSKQFLLHIATGAEVEKEIRIQKSIL 195

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAV QM+IRADLMDAHMYAF RSVLQEVLD+KDKF+SLK+D+LPYLVRSQ+KSE+L+NGA
Sbjct: 196 RAVDQMEIRADLMDAHMYAFKRSVLQEVLDEKDKFRSLKEDMLPYLVRSQMKSEVLLNGA 255

Query: 121 PQGQQAKENGNDKVSY--------RILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           PQ +    NGN+KVS         RIL NASTPSFH+LYA   N S+ VRR HKCC YIA
Sbjct: 256 PQAK----NGNEKVSSQNNQAVVSRILTNASTPSFHDLYASSNNDSSLVRRIHKCCAYIA 311

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
           S S+YC RLNSIQAF DINRDVIG+A+HLSGY+FS+ NNIIHPSA+LGS+TTVGPHCML 
Sbjct: 312 SESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSAQLGSRTTVGPHCMLW 371

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV+MNHVTIGDGCSIQGSVICSNAQLQER 
Sbjct: 372 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVIMNHVTIGDGCSIQGSVICSNAQLQERA 431

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARK 319
            LKDCQVG G+VV+AG E+KGESLARK
Sbjct: 432 VLKDCQVGAGFVVTAGSEHKGESLARK 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088193|emb|CBI35709.3| unnamed protein product [Vitis vinifera]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/329 (79%), Positives = 291/329 (88%), Gaps = 11/329 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IATG E+E+D R++KSIL
Sbjct: 313 MLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSIL 372

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPYLVRSQL+SE+ +NGA
Sbjct: 373 RAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGA 432

Query: 121 PQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           P     +ENG+DKV          ++LA  STPSFHELYA+GPNGSAPVRRTHKCCVYIA
Sbjct: 433 PH---TEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIA 489

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
           S  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSAELGSKTTVG +CMLG
Sbjct: 490 SQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLG 549

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQ+GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI DGCSIQGSVICSNAQLQERV
Sbjct: 550 EGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERV 609

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            LKDCQVG G+VV++G EYKGE LA+KE+
Sbjct: 610 VLKDCQVGAGFVVTSGSEYKGEFLAKKER 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494464|ref|XP_002266884.2| PREDICTED: translation initiation factor eIF-2B subunit gamma [Vitis vinifera]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/329 (79%), Positives = 291/329 (88%), Gaps = 11/329 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IATG E+E+D R++KSIL
Sbjct: 138 MLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSIL 197

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPYLVRSQL+SE+ +NGA
Sbjct: 198 RAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGA 257

Query: 121 PQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           P     +ENG+DKV          ++LA  STPSFHELYA+GPNGSAPVRRTHKCCVYIA
Sbjct: 258 PH---TEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIA 314

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
           S  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSAELGSKTTVG +CMLG
Sbjct: 315 SQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLG 374

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQ+GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI DGCSIQGSVICSNAQLQERV
Sbjct: 375 EGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERV 434

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            LKDCQVG G+VV++G EYKGE LA+KE+
Sbjct: 435 VLKDCQVGAGFVVTSGSEYKGEFLAKKER 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082668|emb|CBI21673.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/329 (79%), Positives = 291/329 (88%), Gaps = 11/329 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IATG E+E+D R++KSIL
Sbjct: 136 MLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSIL 195

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPYLVRSQL+SE+ +NGA
Sbjct: 196 RAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGA 255

Query: 121 PQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           P     +ENG+DKV          ++LA  STPSFHELYA+GPNGSAPVRRTHKCCVYIA
Sbjct: 256 PH---TEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIA 312

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
           S  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSAELGSKTTVG +CMLG
Sbjct: 313 SQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLG 372

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQ+GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI DGCSIQGSVICSNAQLQERV
Sbjct: 373 EGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERV 432

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            LKDCQVG G+VV++G EYKGE LA+KE+
Sbjct: 433 VLKDCQVGAGFVVTSGSEYKGEFLAKKER 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497208|ref|XP_002264945.2| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/329 (79%), Positives = 291/329 (88%), Gaps = 11/329 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CSVPVSG  E+GSS  KDKTKKPG  NIIG+DPTKQFLL+IATG E+E+D R++KSIL
Sbjct: 59  MLCSVPVSGPLESGSSSGKDKTKKPGCCNIIGLDPTKQFLLYIATGPEIERDIRVQKSIL 118

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAVGQM+IRADLMDAH+YAF R+VLQEVLDQKD FQSL+QDVLPYLVRSQL+SE+ +NGA
Sbjct: 119 RAVGQMEIRADLMDAHLYAFKRAVLQEVLDQKDAFQSLQQDVLPYLVRSQLRSELSLNGA 178

Query: 121 PQGQQAKENGNDKVS--------YRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           P     +ENG+DKV          ++LA  STPSFHELYA+GPNGSAPVRRTHKCCVYIA
Sbjct: 179 PH---TEENGHDKVVPGINQVMLSQLLAKTSTPSFHELYAMGPNGSAPVRRTHKCCVYIA 235

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
           S  KYC RLNSIQAF DINRDVIGEA+HLSGY+FSAQNNIIHPSAELGSKTTVG +CMLG
Sbjct: 236 SQDKYCARLNSIQAFSDINRDVIGEASHLSGYSFSAQNNIIHPSAELGSKTTVGQNCMLG 295

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQ+GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI DGCSIQGSVICSNAQLQERV
Sbjct: 296 EGSQLGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTISDGCSIQGSVICSNAQLQERV 355

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            LKDCQVG G+VV++G EYKGE LA+KE+
Sbjct: 356 VLKDCQVGAGFVVTSGSEYKGEFLAKKER 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525249|ref|XP_003531239.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/327 (76%), Positives = 279/327 (85%), Gaps = 11/327 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CS PVSG SE+ SSG KDK KKPGRY++IG+DPTKQFL+HIATGAE+EKD RI+KS+L
Sbjct: 136 MLCSAPVSGPSESVSSGGKDKIKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSML 195

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
            AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPYLVRSQLKSE+L+NG 
Sbjct: 196 PAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLLNGM 255

Query: 121 PQGQQAKENGNDKV--------SYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           PQ   A+ENG +KV          +ILANAS P FH   ALGP+GS   RRTHKCCVYIA
Sbjct: 256 PQ---AEENGTEKVISQSNQQMLSQILANASEPIFHLRNALGPHGSTSDRRTHKCCVYIA 312

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
            +SKYC RLNSIQA+ DINRDV GEA+HLSGY+FSAQNNIIHPSAELG+KTTVGPHC+LG
Sbjct: 313 GSSKYCARLNSIQAYSDINRDVTGEASHLSGYSFSAQNNIIHPSAELGAKTTVGPHCILG 372

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQMGDKCSVKRSVIGRHCRIG NVKVVNSVVMNHVTIG+ CSIQGS+ICSN QLQER 
Sbjct: 373 EGSQMGDKCSVKRSVIGRHCRIGPNVKVVNSVVMNHVTIGESCSIQGSIICSNVQLQERA 432

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARK 319
            LKDCQVG G+VV+AG E KGE LA+K
Sbjct: 433 ILKDCQVGAGFVVTAGSECKGEVLAKK 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452670|ref|XP_004144082.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus] gi|449493530|ref|XP_004159334.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Cucumis sativus]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/329 (75%), Positives = 286/329 (86%), Gaps = 11/329 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CSVPVSG SE+GS+G KDKTKK   +NI+G+DPTKQFLL+IA+GAE+EKD +I+KSIL
Sbjct: 136 MLCSVPVSGSSESGSAGGKDKTKKAVIHNIVGLDPTKQFLLYIASGAEIEKDYKIQKSIL 195

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           RAVGQMDIRADLMDA+MYAF RS LQ+VLDQKD F+SL+QDVLPYLVRSQL+SE+L+NG 
Sbjct: 196 RAVGQMDIRADLMDAYMYAFKRSALQKVLDQKDTFRSLRQDVLPYLVRSQLRSEVLLNGT 255

Query: 121 PQGQQAKENGNDKVSY--------RILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           P+    +ENG +KV          +IL+N+S  SFH+LYA G +GS PVR+THKCCVYI 
Sbjct: 256 PR---TEENGLEKVGSHKIQVLLSQILSNSSATSFHDLYASGADGSIPVRKTHKCCVYIP 312

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
            +S YC RL SIQ++ DINRDVIGEA+HLSGY+FSAQNNIIHPSA+LGSKTTVGPHCMLG
Sbjct: 313 PSSNYCARLFSIQSYSDINRDVIGEASHLSGYSFSAQNNIIHPSAQLGSKTTVGPHCMLG 372

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQMGDKCSVKRSVIGRHCRIGSNVK+ NSVVM+HVTI DGCSIQGSVICSN QLQER 
Sbjct: 373 EGSQMGDKCSVKRSVIGRHCRIGSNVKIANSVVMDHVTIADGCSIQGSVICSNVQLQERA 432

Query: 293 ALKDCQVGQGYVVSAGCEYKGESLARKEK 321
            L+DCQVG G+VV+A CEYKGE+LARKEK
Sbjct: 433 VLRDCQVGAGFVVTAACEYKGEALARKEK 461

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518837|ref|XP_003629707.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula] gi|355523729|gb|AET04183.1| Translation initiation factor eIF-2B subunit gamma [Medicago truncatula]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/324 (74%), Positives = 276/324 (85%), Gaps = 11/324 (3%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           ++C+ PVSG  E+ SSG KDK KKPGRY++IG+DPTKQFLLHIATGAE+EKD RI+KSIL
Sbjct: 136 LLCNTPVSGPLESVSSGGKDKAKKPGRYDLIGLDPTKQFLLHIATGAEVEKDLRIQKSIL 195

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
           R+VGQ++IRADLMDAH+YAF RSVL EVLDQ  +F SLK DVLPYLVRSQLKSE+L+NG 
Sbjct: 196 RSVGQVEIRADLMDAHLYAFKRSVLLEVLDQNGEFHSLKHDVLPYLVRSQLKSEVLLNGT 255

Query: 121 PQGQQAKENGNDKV--------SYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA 172
           PQ   A+ENG +KV          +ILANAS P+FH  + L  NGS  VRRTHKCCVYIA
Sbjct: 256 PQ---AEENGTEKVISQSNQQMLSQILANASEPTFHLRHELSTNGSDSVRRTHKCCVYIA 312

Query: 173 SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG 232
            ++KYC RLNS+QA+ DINRDVIGEA+HLSGY+FS+ NNII P+AELG+KTTVGPHCMLG
Sbjct: 313 GSNKYCARLNSLQAYNDINRDVIGEASHLSGYSFSSHNNIIDPTAELGAKTTVGPHCMLG 372

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
           EGSQMGDKCSVKRSVIGRHCRIG+NVKVVNSVVMNHVTIGDGCSIQGSVICSN QLQER 
Sbjct: 373 EGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGDGCSIQGSVICSNVQLQERA 432

Query: 293 ALKDCQVGQGYVVSAGCEYKGESL 316
            LKDCQVG GY+V+AG + KGE L
Sbjct: 433 TLKDCQVGAGYMVTAGSDCKGEGL 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512489|ref|XP_003524951.1| PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Glycine max]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/333 (72%), Positives = 276/333 (82%), Gaps = 14/333 (4%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           M+CS PVSG  E+ SSG KDKTKKPGRY++IG+DPTKQFL+HIATGAE+EKD RI+KS+L
Sbjct: 136 MLCSAPVSGPLESVSSGGKDKTKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSML 195

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGA 120
            AVGQ++IRADLMDAH+YAF RSVLQEVLDQK  F SLK DVLPYLVRSQLKSE+L+NG 
Sbjct: 196 PAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLLNGI 255

Query: 121 PQGQQAK-----ENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNS 175
           PQ ++ +        N ++  +ILANAS P+FH  +ALGP GS   RRTHKCCVYIA +S
Sbjct: 256 PQAEENRTEKVISQSNQQMLSQILANASEPTFHLRHALGPYGSTFDRRTHKCCVYIAGSS 315

Query: 176 KYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTT---------VG 226
           KYC RLNSIQA+ DINRDVIGEA+ LSGY+FS  NNIIHPSAELG+KT          VG
Sbjct: 316 KYCARLNSIQAYTDINRDVIGEASRLSGYSFSTLNNIIHPSAELGAKTPLSISGRELFVG 375

Query: 227 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA 286
           PHC+LGEGSQMGDKCSVKRSVIGRHCRIG+NVKVVNSVVMNHVTIG+ CSIQGSVICSN 
Sbjct: 376 PHCILGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGESCSIQGSVICSNV 435

Query: 287 QLQERVALKDCQVGQGYVVSAGCEYKGESLARK 319
           QLQER  LKDCQVG G+VV+AG E KGE LA+K
Sbjct: 436 QLQERAVLKDCQVGAGFVVTAGSECKGEVLAKK 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:1009023495	456	AT5G19485 [Arabidopsis thalian	0.978	0.688	0.674	2.2e-112
UNIPROTKB|Q4R6T3	452	EIF2B3 "Translation initiation	0.915	0.650	0.300	2.6e-31
UNIPROTKB|I3LN50	382	EIF2B3 "Uncharacterized protei	0.872	0.732	0.301	6.9e-31
DICTYBASE|DDB_G0290693	440	eif2b3 "eukaryotic translation	0.853	0.622	0.282	4.9e-30
UNIPROTKB|F1P4Z9	437	EIF2B3 "Uncharacterized protei	0.853	0.627	0.300	1e-29
RGD|620821	452	Eif2b3 "eukaryotic translation	0.915	0.650	0.287	1.3e-29
UNIPROTKB|P70541	452	Eif2b3 "Translation initiation	0.915	0.650	0.287	1.3e-29
UNIPROTKB|Q9NR50	452	EIF2B3 "Translation initiation	0.915	0.650	0.291	1.6e-29
UNIPROTKB|E2RBJ1	452	EIF2B3 "Uncharacterized protei	0.915	0.650	0.278	1.2e-28
UNIPROTKB|A5PJI7	452	EIF2B3 "Translation initiation	0.872	0.619	0.284	3.9e-28

TAIR|locus:1009023495 AT5G19485 [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 220/326 (67%), Positives = 258/326 (79%)

Query:     1 MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
             M+C+ PVSG SE+G SG KDKTKKP   +IIG+D  KQFLL+IA G E++KDTR++KSIL
Sbjct:   136 MLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAKGTEIKKDTRVKKSIL 195

Query:    61 RAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILI--- 117
              A G+M+IR+DLMD+H+YAF R+VLQEVLDQK  F+SLKQDVLPYLVR+QL+S++     
Sbjct:   196 CAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPYLVRTQLRSDVFSDQS 255

Query:   118 ----NGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIAS 173
                 NG   G+   +N N+ V  +IL+NAS PSFH++Y  G       R+THKCCVYIA 
Sbjct:   256 NVEENGNGNGKNNMQN-NEVVLSQILSNASMPSFHQVYESGLG----TRKTHKCCVYIAD 310

Query:   174 NSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGE 233
              SKY VRLNSIQAFMD+NRDVIGE+NHLSGY+FSA +NI+HPSAELGSKTTVGPHCMLGE
Sbjct:   311 ESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAELGSKTTVGPHCMLGE 370

Query:   234 GSQMGDKCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVA 293
             GSQ+GDKCSVKRSVIGRHCRIGS             TIGDGCSIQGSVICSNAQLQERV 
Sbjct:   371 GSQVGDKCSVKRSVIGRHCRIGSNVKIVNSVVMDHATIGDGCSIQGSVICSNAQLQERVT 430

Query:   294 LKDCQVGQGYVVSAGCEYKGESLARK 319
             L+DCQV  GYVV AG E+KGE+ ARK
Sbjct:   431 LRDCQVEAGYVVCAGSEHKGETFARK 456

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q4R6T3 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Macaca fascicularis (taxid:9541)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 95/316 (30%), Positives = 156/316 (49%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++    DL+DAH
Sbjct:   144 GQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKYPRIRFHTDLVDAH 203

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVS- 135
             +Y   + V+ + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K   
Sbjct:   204 LYCLKKYVV-DFLMENGSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKEL 258

Query:   136 -----YRILANASTPSFHELYAL-----GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
                  Y  L  A+T +     A      G       R   +C V+I      C R++++ 
Sbjct:   259 KSLDIYSFLKEANTLNLAPYDACWNACRGDRWEDLPRSQVRCYVHIMKEG-LCSRVSTLG 317

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V      LS      +  ++H SA++ SK  VG   ++G  +Q+G+K S+KR
Sbjct:   318 LYMEANRQV---PKLLSA--LCPEEPLVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKR 372

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SVIG  C I               T+ +G +IQGSVIC+NA +++   +KDC +G G  +
Sbjct:   373 SVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRI 432

Query:   306 SAGCEYKGESLARKEK 321
              A  +   E +   ++
Sbjct:   433 EAKAKRVNEVIVGSDQ 448

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|I3LN50 EIF2B3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 91/302 (30%), Positives = 155/302 (51%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + +G+D T + LL +A  A+L+++  I+ +IL+   ++     L+DAH
Sbjct:    74 GQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEELVIKGAILQKHPRIRFHTGLVDAH 133

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
             +Y   R V+  +++ K    S++ +++PYLVR Q  S      + QGQ+ KE    K   
Sbjct:   134 LYCLRRYVVDFLMEYKS-ITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEELKKKEL 188

Query:   137 RILANAS--------TPSFHELYALGPNGSA--PVRRTH-KCCVYIASNSKYCVRLNSIQ 185
             + L   S        T + H+       G +   + R+  +C V+I      C R+ ++ 
Sbjct:   189 KTLDIYSFIKEVGPLTFALHDACWNACRGDSREDLSRSQVRCYVHIMKEG-LCSRVGTLG 247

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V    + L       + +++HPSA++ SK  +G   ++G  +Q+G+K SVKR
Sbjct:   248 LYMEANRQV----SKLLPV-ICPEESLVHPSAQIVSKHLIGADSLIGPDTQVGEKSSVKR 302

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SVIG  C I               T+ +G +IQGSVIC+NA +++   +KDC +G G  +
Sbjct:   303 SVIGSSCVIRDRVTVTNSLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGNGQRI 362

Query:   306 SA 307
              A
Sbjct:   363 EA 364

GO:0051716 "cellular response to stimulus" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

DICTYBASE|DDB_G0290693 eif2b3 "eukaryotic translation initiation factor 2B, subunit 3 gamma" [Dictyostelium discoideum (taxid:44689)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 82/290 (28%), Positives = 148/290 (51%)

Query:     6 PVSGLSEAGSSGAKDKTKKPGRY-NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVG 64
             P   + + G    +  TK+   + + I ++   Q ++ +    E+E+D    KS+L+   
Sbjct:   149 PTPKVEQKGKGATETSTKQDKLFTDYIALEEKSQKIVMMEPATEVEEDLNFNKSLLKYFP 208

Query:    65 QMDIRADLMDAHMYAFNRSVLQEVL-DQKDK---FQSLKQDVLPYLVRSQLKSEILINGA 120
              + I  +L D  +Y F+R VL  ++ DQK+K   F  +K+ ++PYL+  Q+ +       
Sbjct:   209 NVTIYTNLQDTQLYIFSRWVLDLIIEDQKEKYPLFFDIKKHLIPYLLSCQIPNIKRKRAL 268

Query:   121 PQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVR 180
             P    +  N N  +S + +++ ++P F +   L    +A   +T KC  ++     YC+ 
Sbjct:   269 PA---SAFNQNQTLS-QTMSSTTSP-FDQFSEL----NAQKNKTIKCFAHLLKKEGYCMN 319

Query:   181 LNSIQAFMDINRDVI-GEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGD 239
             +N+I+ +  INRD+  G+  +L     S +N  I P+A + + T VGP C++G  + +G 
Sbjct:   320 VNTIKNYQQINRDIAKGDLQYLPNEPKSEKNFFIDPTANV-TITQVGPQCVIGTSTTLGA 378

Query:   240 KCSVKRSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQ 289
             KCSVK S+IG+HC+IG               I D C I  S+IC++  ++
Sbjct:   379 KCSVKFSIIGKHCKIGDGVRIENSIIMDHVIIEDRCVINSSIICNDVYIK 428

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|F1P4Z9 EIF2B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 89/296 (30%), Positives = 148/296 (50%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + IG+D T + LL +A  A+L+++  I++SIL+   +M IR  LMDAH
Sbjct:   142 GQKGKKKPVEQRDFIGVDDTGKRLLFMANEADLDEELVIKRSILQKHPRMHIRTGLMDAH 201

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
             +Y   + V+  +++ +    SL+ +++P+LVR Q  S   +     G   KE G  K   
Sbjct:   202 LYCLKKYVVDFLVENRT-ITSLRSELIPHLVRKQFSSPTSLQ---HGLDNKEEGRKKKEQ 257

Query:   137 RILANAS-TPSFHELYALGPNGSA------PVRRT-H----KCCVYIASNSKYCVRLNSI 184
               L   S     + L    P+ S        +  T H    +C V+I      C R+N++
Sbjct:   258 ASLDIYSFIKEDNSLLKPAPDNSCWNDHRGDMNETLHEGKVRCYVHIMKEG-LCCRVNTL 316

Query:   185 QAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK 244
               +++ NR V      L   N   +  ++H +A++  +  VG   ++G  +Q+G+K S+K
Sbjct:   317 ALYIEANRQV---PKLL--LNLGLEEPLVHGTAQITDRGMVGSDSIIGSSTQIGEKTSIK 371

Query:   245 RSVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVG 300
              S+IG  C I               TI +GC +QGSVIC+NA +++   +KDC +G
Sbjct:   372 HSIIGSACTIKDKVKITNCIIMNSVTIEEGCCLQGSVICNNAVIEKGADIKDCLIG 427

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0051716 "cellular response to stimulus" evidence=IEA

RGD|620821 Eif2b3 "eukaryotic translation initiation factor 2B, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 91/316 (28%), Positives = 155/316 (49%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++  +  L+DAH
Sbjct:   144 GQKGKKKTVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIHFQTGLVDAH 203

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
             +Y   + V+  +++ K    S++ +++PYLVR Q  S      + Q Q+ KE    K   
Sbjct:   204 LYCLKKYVVDFLMENKS-ITSIRSELIPYLVRKQFSSA----SSQQRQEDKEEDLKKKEP 258

Query:   137 RILANASTPSFHELYALGPNGSA--PVRRTH---------KCCVYIASNSKYCVRLNSIQ 185
             + L   S         L P  +     RR           +C V+I      C R++++ 
Sbjct:   259 KSLDIYSFIKKDNTLTLAPYDACWNAFRRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLG 317

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V      LS      + ++IHPSA++ +K  +G   ++G  +Q+G+K S+KR
Sbjct:   318 LYMEANRQV---PKLLSV--LCPEESMIHPSAQIANKHLIGADSLIGSDTQVGEKSSIKR 372

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SVIG  C I               T+ +G SI GSVIC+NA ++    ++DC +G G  +
Sbjct:   373 SVIGSSCVIRDRVTVTNCLLMNSVTVEEGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRI 432

Query:   306 SAGCEYKGESLARKEK 321
              A  +   E +   ++
Sbjct:   433 EAKAKRMNEVIVGNDQ 448

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO;IGI;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISO;ISS;IDA;IPI

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=ISO;ISS

GO:0006417 "regulation of translation" evidence=IMP

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISO;ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009408 "response to heat" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IDA

GO:0014003 "oligodendrocyte development" evidence=ISO;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=IMP

GO:0043434 "response to peptide hormone stimulus" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=ISO;ISS

UNIPROTKB|P70541 Eif2b3 "Translation initiation factor eIF-2B subunit gamma" [Rattus norvegicus (taxid:10116)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 91/316 (28%), Positives = 155/316 (49%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++  +  L+DAH
Sbjct:   144 GQKGKKKTVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIHFQTGLVDAH 203

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
             +Y   + V+  +++ K    S++ +++PYLVR Q  S      + Q Q+ KE    K   
Sbjct:   204 LYCLKKYVVDFLMENKS-ITSIRSELIPYLVRKQFSSA----SSQQRQEDKEEDLKKKEP 258

Query:   137 RILANASTPSFHELYALGPNGSA--PVRRTH---------KCCVYIASNSKYCVRLNSIQ 185
             + L   S         L P  +     RR           +C V+I      C R++++ 
Sbjct:   259 KSLDIYSFIKKDNTLTLAPYDACWNAFRRDKWEDLSRSQVRCYVHIMKEG-LCSRVSTLG 317

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V      LS      + ++IHPSA++ +K  +G   ++G  +Q+G+K S+KR
Sbjct:   318 LYMEANRQV---PKLLSV--LCPEESMIHPSAQIANKHLIGADSLIGSDTQVGEKSSIKR 372

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SVIG  C I               T+ +G SI GSVIC+NA ++    ++DC +G G  +
Sbjct:   373 SVIGSSCVIRDRVTVTNCLLMNSVTVEEGSSIHGSVICNNAVVEAGAEIRDCLIGSGQRI 432

Query:   306 SAGCEYKGESLARKEK 321
              A  +   E +   ++
Sbjct:   433 EAKAKRMNEVIVGNDQ 448

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

UNIPROTKB|Q9NR50 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 92/316 (29%), Positives = 154/316 (48%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH
Sbjct:   144 GQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIRFHTGLVDAH 203

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVS- 135
             +Y   + ++ + L +     S++ +++PYLVR Q  S      + QGQ+ KE    K   
Sbjct:   204 LYCLKKYIV-DFLMENGSITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKEL 258

Query:   136 -----YRILANASTPSFHELYAL-----GPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
                  Y  +  A+T +     A      G       R   +C V+I      C R++++ 
Sbjct:   259 KSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRCYVHIMKEG-LCSRVSTLG 317

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V      LS      +   +H SA++ SK  VG   ++G  +Q+G+K S+KR
Sbjct:   318 LYMEANRQV---PKLLSA--LCPEEPPVHSSAQIVSKHLVGVDSLIGPETQIGEKSSIKR 372

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SVIG  C I               T+ +G +IQGSVIC+NA +++   +KDC +G G  +
Sbjct:   373 SVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRI 432

Query:   306 SAGCEYKGESLARKEK 321
              A  +   E +   ++
Sbjct:   433 EAKAKRVNEVIVGNDQ 448

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0006413 "translational initiation" evidence=IDA;TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0009408 "response to heat" evidence=ISS;TAS

GO:0014003 "oligodendrocyte development" evidence=IMP

GO:0032057 "negative regulation of translational initiation in response to stress" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=IDA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0051716 "cellular response to stimulus" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=ISS

GO:0043434 "response to peptide hormone stimulus" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|E2RBJ1 EIF2B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 88/316 (27%), Positives = 157/316 (49%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + IG+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH
Sbjct:   144 GQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEELVIKGSILQKHPRIHFHTGLVDAH 203

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
             +Y   + V+  +++ K    S++ +++PYL+R Q  S      + QGQ  KE    K   
Sbjct:   204 LYCLKKYVVDFLMENKS-ITSIRSELIPYLIRKQFSSA----SSQQGQDEKEEDLKKKEL 258

Query:   137 RILA--------NASTPSFHEL---YALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
             + L         NA T + ++       G       +   +C V+I      C R++++ 
Sbjct:   259 KSLDIFSFIKEDNALTFAPYDACWNVCRGERWEDLSKSQVRCYVHIMKEG-LCSRVSTLG 317

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V      LS      + ++IH SA++ +K  +G   ++G  +Q+G+K S+K 
Sbjct:   318 LYMEANRQV---PKLLSV--LCPEESLIHSSAQIVNKHLIGVDSLIGPDTQVGEKSSIKH 372

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SV+G  C I               T+ +G +IQGSVIC+NA +++ V +K+C +G G  +
Sbjct:   373 SVVGSSCVIRDRVTITSCLLMNSVTVEEGSNIQGSVICNNAVIEKGVDIKNCLIGNGQRI 432

Query:   306 SAGCEYKGESLARKEK 321
              A  +   E +   ++
Sbjct:   433 EAKAKRVNEVIVGSDQ 448

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|A5PJI7 EIF2B3 "Translation initiation factor eIF-2B subunit gamma" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 86/302 (28%), Positives = 152/302 (50%)

Query:    17 GAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAH 76
             G K K K   + + +G+D T + LL +A  A+L+++  I+ SIL+   ++     L+DAH
Sbjct:   145 GQKGKKKAVEQRDFVGVDSTGKRLLFMANEADLDEELIIKGSILQKHPRIRFHTGLVDAH 204

Query:    77 MYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSY 136
             +Y   + V+  +++ K    S++ +++PYLVR Q  S      + QGQ+ KE    K   
Sbjct:   205 LYCLKKYVVDFLMENKS-ITSIRSELIPYLVRKQFSSA----SSQQGQEEKEEDLKKKEL 259

Query:   137 RIL--------ANASTPSFHELY---ALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQ 185
             + L        AN  T + ++       G +     R   +C V+I      C R++++ 
Sbjct:   260 KSLDIYSFIKEANTLTLAPYDTCWNACRGDSWEGLSRSQVRCYVHIMKEG-LCSRVSTLG 318

Query:   186 AFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR 245
              +M+ NR V    + L       + ++IH SA++ SK  VG   ++G  +Q+G+K S+K 
Sbjct:   319 LYMEANRQV----SKLLPV-ICPEESLIHSSAQIVSKHMVGADSLIGPDTQVGEKSSIKH 373

Query:   246 SVIGRHCRIGSXXXXXXXXXXXXXTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
             SVIG  C I               T+ +G +IQ S+IC++A +++   +K+C +G G  +
Sbjct:   374 SVIGSSCVIRDRVTVTNCLLMNSVTVEEGSNIQSSIICNDAVIEKGADIKNCLIGSGQRI 433

Query:   306 SA 307
              A
Sbjct:   434 EA 435

GO:0006413 "translational initiation" evidence=ISS

GO:0014003 "oligodendrocyte development" evidence=ISS

GO:0051716 "cellular response to stimulus" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	2e-34
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	2e-21
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	3e-20
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-15
cd04198	214	cd04198, eIF-2B_gamma_N, The N-terminal domain of	5e-15
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	3e-14
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	1e-11
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	1e-10
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	2e-10
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	9e-10
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	2e-09
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	3e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	3e-09
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	4e-09
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	4e-09
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	5e-09
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	2e-08
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	3e-08
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	4e-08
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	5e-08
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	1e-06
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	1e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	1e-06
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-06
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	2e-06
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	2e-06
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	3e-06
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	3e-06
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	3e-06
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	3e-06
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	5e-06
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	8e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	1e-05
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	1e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	2e-05
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	3e-05
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	5e-05
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	5e-05
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	8e-05
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	9e-05
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	1e-04
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	1e-04
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	1e-04
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	1e-04
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	2e-04
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	2e-04
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	3e-04
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	4e-04
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	4e-04
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	5e-04
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	7e-04
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	0.003
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	0.003
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	0.003
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	0.003
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	0.004

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score =  120 bits (303), Expect = 2e-34
 Identities = 40/79 (50%), Positives = 59/79 (74%)

Query: 230 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQ 289
           ++GE +Q+G+K S+KRSVIG +C+IG  VK+ N V+M++VTI DGC+++  +I + A + 
Sbjct: 1   LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIG 60

Query: 290 ERVALKDCQVGQGYVVSAG 308
           E+  LKDC VG GY V AG
Sbjct: 61  EKCKLKDCLVGSGYRVEAG 79

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 26/69 (37%), Positives = 42/69 (60%)

Query: 231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 290
           +GE + +G+   +K SVIG + RIG  V + NS++M++VTIG    I  S+I  NA + E
Sbjct: 2   IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGE 61

Query: 291 RVALKDCQV 299
            V + +  +
Sbjct: 62  NVRVVNLCI 70

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 82.6 bits (205), Expect = 3e-20
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 290
           +G G+ +G+  ++K SVIGR+C+IG NV + NS + + VTI DGC+I  S++   A +  
Sbjct: 2   IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIG- 60

Query: 291 RVALKDCQVGQGYVVSAGCE 310
               K C +  G ++S G  
Sbjct: 61  ----KGCTIPPGSLISFGVV 76

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           +I P A++G    +GP+ ++GEG  +G+   +K S+I  +  IG    + +S++  +  I
Sbjct: 263 VIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKI 322

Query: 272 GDGCSIQGSVICSNAQLQ-ERVALKDCQVGQGYVVS 306
           G    I   VI  N+++    V      V  G +  
Sbjct: 323 GASLIIGDVVIGINSEILPGVVVGPGSVVESGEIED 358

Length = 358

>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 1   MICSVPVSGLSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSIL 60
           ++   PVS   +    G K K+KK    ++IG+D   Q LL I +  +L++D  +RKS+L
Sbjct: 134 LLYPPPVSSEQK----GGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLL 189

Query: 61  RAVGQMDIRADLMDAHMYAFNRSVL 85
           +   ++ I   L+DAH+Y F R VL
Sbjct: 190 KRHPRVTITTKLLDAHVYIFKRWVL 214

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 182 NSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC 241
            + +  ++ N  ++            +    I     +     +    ++G G+++G   
Sbjct: 222 GTPEDLLEANELLLRGDGK-------SPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPGA 274

Query: 242 SVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVG 300
            +   +VIG    IG+ V++ NS++M++V IG G  I  S+I  N ++   + + D  +G
Sbjct: 275 LIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASLIIGDVVIG 334

Query: 301 QGYVVSAG 308
               +  G
Sbjct: 335 INSEILPG 342

Length = 358

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-------KRSVIGRHCRIGSNVKVVNSV 264
           +I PSA++G   ++GP+ ++G G  +GD   +           IG  CR+ +NV      
Sbjct: 108 VIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANV-----T 162

Query: 265 VMNHVTIGDGCSIQ-GSVI 282
           + + V IG+   I  G+VI
Sbjct: 163 IYHAVRIGNRVIIHSGAVI 181

Length = 343

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 230 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA 286
           ++ EG  +    +V+ SV+ R  R+GS   V +SV+M +V IG    I+ ++I  N 
Sbjct: 14  LVSEGCII-SGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNV 69

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 184 IQAFMDINRDVIGEANHLSGYNFSAQ---NNIIHPSAELGSKTTVGPHCMLGEGSQMGDK 240
           I +F + N D++        Y+        N   P A+           ++ EG  +   
Sbjct: 247 IDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISG- 305

Query: 241 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
            +V  SV+G   RIGS   V +SV+M  V IG G  I+ ++I  N ++ E V
Sbjct: 306 ATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGV 357

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 10  LSEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTR--IRKSILRAVGQMD 67
           +  A    + +++KK    ++I +D   Q LL +    +L++D    IRKS+L     + 
Sbjct: 139 VLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVT 198

Query: 68  IRADLMDAHMYAFNRSVL 85
           IR DL+D H+Y  +  VL
Sbjct: 199 IRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           +I  S  +G    +    ++G+  ++GD  ++  S++  +  IG+N  +V+S++ ++  I
Sbjct: 1   LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59

Query: 272 GDGCSIQGSVI 282
           G+   +    I
Sbjct: 60  GENVRVVNLCI 70

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
            I  + E+G    + P+ +L    ++GD   +    + ++  IGSNV +    V+    I
Sbjct: 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEI 316

Query: 272 GDGCSI-------QGSVICS-----------NAQLQERVA------LKDCQVGQGYVVSA 307
           G+GC +        GSV+ +           NA++ +         L D ++G    + A
Sbjct: 317 GEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGA 376

Query: 308 G---CEYKG 313
           G   C Y G
Sbjct: 377 GTITCNYDG 385

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 216 SAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV-VNSVVMNHVTIGD 273
           SA++G   ++GP+ ++GEG  +GD   +    VIG    IG +  +  N  +     IGD
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 274 GCSIQ-GSVI 282
              I  G+VI
Sbjct: 61  RVIIHSGAVI 70

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 14/112 (12%)

Query: 182 NSIQAFMDINRDVIGEANHLSGYNFSAQ---NNIIHPSAELGSKTTVGPHCMLGEGSQMG 238
            +I ++ + N D++     L+ Y+ +      N   P A+  + + V         S + 
Sbjct: 248 GTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-------SNSLVA 300

Query: 239 DKC----SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA 286
             C    +V+ SV+ R  RIG    + NSV+M  V IG+G  ++ ++I  N 
Sbjct: 301 GGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNV 352

Length = 393

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 203 GYNFSAQNNIIHPSA------ELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 255
           GY F+    +IHPSA       +G  T +    ++    ++GD   +   +++   C IG
Sbjct: 74  GYRFA---TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 130

Query: 256 SNVKV-VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQGYVV 305
             V +     +   V IG+G  I G    + A + + V +     VG G VV
Sbjct: 131 DYVHIAPGVTLSGGVVIGEGVFI-G----AGATIIQGVTIGAGAVVGAGAVV 177

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 203 GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN 262
           GY F+    +IHPSA       V P  ++GEG  +        +VI    RIG NV ++N
Sbjct: 80  GYRFA---TLIHPSA------VVSPSAVIGEGCVIM-----AGAVINPDARIGDNV-IIN 124

Query: 263 S--VVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL-------------KDCQVGQGYVV 305
           +  V+ +   IGD   I  G V+     + E   +                 +G G VV
Sbjct: 125 TGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 53.9 bits (131), Expect = 2e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 17/72 (23%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           I+ P A++G    +GP C++G          V   VIG    IGS+V     V+  H TI
Sbjct: 10  IVEPGAKIGENVEIGPFCVIGPN--------V---VIGDGTVIGSHV-----VIDGHTTI 53

Query: 272 GDGCSI-QGSVI 282
           G    I   + I
Sbjct: 54  GKNNRIFPFASI 65

Length = 262

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 184 IQAFMDINRDVIGEANHLSGYN-----FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMG 238
           I++  + N +++   N L+ ++     +S   N   P   +     V       + S + 
Sbjct: 247 IESLWEANMELLRPENPLNLFDRNWRIYS--VNPNLPPQYIAENAKV-------KNSLVV 297

Query: 239 DKC----SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL 294
           + C    +V+ SV+ +  ++G    V +SV+M    IG+   I+ ++I  NA + + V +
Sbjct: 298 EGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVII 357

Query: 295 KDCQ-----VGQGYVVSAGCE 310
              +     +G+  V+  G  
Sbjct: 358 GGGKEVITVIGENEVIGVGTV 378

Length = 380

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVV-NSVVMNHV 269
           +I P+A +G   ++GP+ ++G G  +G+   +   +VIG + +IG    +  N  + ++V
Sbjct: 107 VIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNV 166

Query: 270 TIGDGCSIQ-GSVICSN 285
            IG+   I  G+VI ++
Sbjct: 167 VIGNNVIIHSGAVIGAD 183

Length = 338

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 52.8 bits (128), Expect = 5e-08
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           I+ P A++G    +GP C++G               IG    IGS+V     V+    TI
Sbjct: 7   IVDPGAKIGENVEIGPFCVIGPN-----------VEIGDGTVIGSHV-----VIDGPTTI 50

Query: 272 GDGCSI-QGSVI 282
           G    I   + I
Sbjct: 51  GKNNRIFPFASI 62

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 212 IIHPSAELGSKTTVGPHCMLG-----EGSQMGDKCSVKRSVIGRHCRIGSNVKV-VNSVV 265
           II P   L   T +G  C +G     E SQ+G+  +V  SV+    +IG  VK+   + +
Sbjct: 270 IIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVV-SDSQIGDGVKIGPYAHL 328

Query: 266 MNHVTIGDGCSIQGSVICSNAQLQER--VA----LKDCQVGQGYVVSAG 308
                IG  C I   V    +QL E   V     + D  +G+   + AG
Sbjct: 329 RPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAG 377

Length = 450

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVM---- 266
           +I PSA+LGS   +GP  ++G   ++GD   +   +VI    RIG N K+    V+    
Sbjct: 7   VIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEP 66

Query: 267 ---------NHVTIGDGCSI 277
                    + + IGD   I
Sbjct: 67  QDFTYKGEESRLEIGDRNVI 86

Length = 255

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 17/72 (23%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           II P AE+G    +GP C++G G             IG    + S+V     V++ H TI
Sbjct: 6   IIEPGAEIGENVEIGPFCIVGPG-----------VKIGDGVELKSHV-----VILGHTTI 49

Query: 272 GDGCSI-QGSVI 282
           G+G  I  G+VI
Sbjct: 50  GEGTRIFPGAVI 61

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 247 VIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV 305
           VIG   +IG    +   +V+   VTIG+G  I+ S+I  N  +     + D  +G+   +
Sbjct: 263 VIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKI 322

Query: 306 SAGCE 310
            A   
Sbjct: 323 GASLI 327

Length = 358

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 19/119 (15%)

Query: 183 SIQAFMDINRDVIGEANHLSGYNFSAQ--NNIIHPSAELGSKTTVG----PHCMLGEGSQ 236
            I +   I  D  G A    G+    Q    II    E+G+ TT+        ++GEG +
Sbjct: 173 IIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVK 232

Query: 237 MGDKCSVKRSVIGRHCRIGSNVKVVNSVVM-NHVTIGDGCSIQGSV-------ICSNAQ 287
           + +        IG + RIG +  +   V +   V IG    I G V       I     
Sbjct: 233 IDNLVQ-----IGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVT 286

Length = 338

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 192 RDVIGEANHLSGYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR 250
           R  I     L+G      +   I     +G  TT+ P   +   +++G+ C++++ V+ +
Sbjct: 243 RRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK 302

Query: 251 HCRIGSNVKV------VNSVVMNHVTIG 272
            CRIG +V V       +SVV + V IG
Sbjct: 303 GCRIGDDVTVKAGSVLEDSVVGDDVAIG 330

Length = 459

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 228 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG 279
           + +L  G ++G    V+ SVI  +  IG N  +  +++  +V I DG  I G
Sbjct: 28  NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGS-----QMGDKCSVKRSVIGRHCRIGSNVKV------ 260
           +I P   +   T +G  C++G GS      +GD  ++  SVI    ++G NV V      
Sbjct: 273 VIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVI-EESKVGDNVTVGPFAHL 331

Query: 261 -VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 309
              SV+   V IG+   I+ S I    ++     + D +VG+   V+ GC
Sbjct: 332 RPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGEN--VNIGC 379

Length = 458

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 31/145 (21%)

Query: 183 SIQAFMDINRDVIGEANHLSGYN-----FSAQNN-----IIHPSAELGSKTTVGPHCMLG 232
           +I A+ D + D++      + YN     +++  N      +     +GS        ++ 
Sbjct: 264 TIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQD----SLVS 319

Query: 233 EGS--QMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE 290
            GS        +V+ SV+  +  + S  +V +SV+M+ V IG G  ++ +++  N  +  
Sbjct: 320 AGSIISGA---TVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPP 376

Query: 291 RVALKDCQVG-------QGYVVSAG 308
                   +G       + + VS G
Sbjct: 377 GA-----TIGVDLEEDRRRFTVSEG 396

Length = 407

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           IHP+A +     +G    +G    +G         IG +  IG  V     V+ + V IG
Sbjct: 94  IHPTAVVDPSAKIGDGVTIGPNVVIGA-----GVEIGENVIIGPGV-----VIGDDVVIG 143

Query: 273 DGCSIQGSV-ICSNAQLQERVALKDCQV----GQGYVVSAG 308
           DG  I  +V I    QL + V +    V    G GY  +A 
Sbjct: 144 DGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTAN 184

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 20/88 (22%)

Query: 230 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN-------------------HVT 270
           ++ EG  +   CS+  SV+G   RI S   + +++VM                     + 
Sbjct: 310 IIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLG 368

Query: 271 IGDGCSIQGSVICSNAQLQERVALKDCQ 298
           IG+G +I+ ++I  NA++   V + +  
Sbjct: 369 IGEGTTIKRAIIDKNARIGNNVRIVNKD 396

Length = 429

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVMNH 268
           N +I     +G    +G   ++GE  ++GD   +     I  +  IG+NV     ++ + 
Sbjct: 123 NVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV-----IIHSG 177

Query: 269 VTIG-DGCSIQGSVI 282
             IG DG    G+ I
Sbjct: 178 AVIGADGFGYAGTAI 192

Length = 338

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           I    E+G    + P  +L   + +G+ C +  + + +   IG  V +  S V+    IG
Sbjct: 12  IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIG 71

Query: 273 DGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
           +G ++        G+V+     +   V +K   +G+G
Sbjct: 72  NGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEG 108

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERV 292
           IG +C IG+NV      + N V IGD   IQ +V I     +++ V
Sbjct: 1   IGDNCIIGTNV-----FIENDVKIGDNVKIQSNVSIYEGVTIEDDV 41

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 17/90 (18%)

Query: 194 VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR 253
           V+  +  +        N +I    E+G    +GP  ++G+             VIG   R
Sbjct: 99  VVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDD-----------VVIGDGSR 147

Query: 254 IGSNVKVVNSVVMNHVTIGDGCSIQ-GSVI 282
           I  NV     V+   V +G    I  G+VI
Sbjct: 148 IHPNV-----VIYERVQLGKNVIIHSGAVI 172

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 37/135 (27%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR-----IGSNVKVVNSVVMN 267
           I    E+G    + P+ +L   + +GD       VIG         IG N  +    V+ 
Sbjct: 265 IRGDVEIGRDVVIEPNVILEGNTVIGD-----NVVIGPGSVIKDSVIGDNAVIKAYSVIE 319

Query: 268 HVTIGDGCSI-------QGSVICS-----------NAQLQERVA------LKDCQVGQGY 303
             T+G+G ++        G+V+ +            A + +         L D ++G+  
Sbjct: 320 GSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENV 379

Query: 304 VVSAG---CEYKGES 315
            + AG   C Y G++
Sbjct: 380 NIGAGTITCNYDGKN 394

Length = 460

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 17/70 (24%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           I    E+GS T + P  ++ +G           +VIG  C IG   ++V+S      TIG
Sbjct: 262 IDADVEIGSDTVIEPGVVI-KG----------NTVIGEDCVIGPGSRIVDS------TIG 304

Query: 273 DGCSIQGSVI 282
           DG +I  SVI
Sbjct: 305 DGVTITNSVI 314

Length = 458

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           +I PSA++G    +GP+ ++G    +GD   ++R VI  +  +  +  V +S+V  + T+
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60

Query: 272 GDGCSIQGSVICSNAQLQERVALKD 296
           G    ++   +     L + V +KD
Sbjct: 61  GRWTRLENVTV-----LGDDVTIKD 80

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 28/155 (18%), Positives = 42/155 (27%), Gaps = 28/155 (18%)

Query: 136 YRILANASTPSFHELYALGPNGSAPVRRTH--KCCVYIASNSKYCVRLNSIQAFMDINRD 193
               A          + +        R        V I       +R           R 
Sbjct: 12  LADRARVRIDDGA--FNVAGKPVKLGRYAEILGRLVGIKIGEVAVIR--------PPVRI 61

Query: 194 VIGEANHLSGYNFS-AQNN--IIHPSAELGSKTTVGPHCMLGEGS--------QMGDKCS 242
            +GE N   G       N   ++     +G    VGP+  +   S         +G    
Sbjct: 62  DLGEKNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVG 121

Query: 243 VKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI 277
                IG    IG+       V++  VTIG+G  I
Sbjct: 122 AGPVTIGEDVWIGAGA-----VILPGVTIGEGAVI 151

Length = 190

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 238 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC 297
           G +  VK S++   C I S   V NSV+   V +G G  ++ SVI  N  +     ++  
Sbjct: 5   GRRGEVKNSLVSEGCII-SGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRA 63

Query: 298 QVGQGYVVSAGC 309
            + +  V+  G 
Sbjct: 64  IIDKNVVIPDGV 75

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 238 GDKCSVKRSV-IGRHCRIGSNVKVVNSV-VMNHVTIGDGCSIQGSVICSN 285
           GD C +  +V I    +IG NVK+ ++V +   VTI D   I  +V+ +N
Sbjct: 2   GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTN 51

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 19/73 (26%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN-HVT 270
           II P AE+G    +GP C                 +IG +  IG    + + VV+  H T
Sbjct: 11  IIEPGAEIGEDVKIGPFC-----------------IIGPNVEIGDGTVLKSHVVVEGHTT 53

Query: 271 IGDGCSI-QGSVI 282
           IG    I   + I
Sbjct: 54  IGRNNRIFPFASI 66

Length = 260

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-IGRHCRIGSNVKVVNSVVMNHVT 270
            I   A + S   +    ++G+G ++G    ++    +G  C +G++V+V NS++M+   
Sbjct: 19  WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTK 78

Query: 271 IGDGCSIQGSVICSNAQL 288
           +     +  SV+  N  L
Sbjct: 79  VPHLNYVGDSVLGENVNL 96

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 210 NNIIHPSAELGSKTTV-------GPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV 261
           N  I     +G    +       GP   +G+   +G    ++  +VIG +  IG+ V++ 
Sbjct: 242 NVTIKGPVVIGEGAVIRSGTYIEGP-VYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVEIK 300

Query: 262 NSVVMNHVTIGDGCSIQGSVICSNAQL 288
           NS++M    I     +  SVI  N   
Sbjct: 301 NSIIMEGTKIPHLSYVGDSVIGENCNF 327

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 34/102 (33%)

Query: 189 DINRDVIGEANHLSGYNFSAQNN-IIHPSAE----LGSKTTVGPHCMLGEGSQMGDKCSV 243
           D+N   IGE         + Q+  ++H        +G   TVG   +L            
Sbjct: 35  DVNPIRIGE-------RTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL------------ 75

Query: 244 KRSVIGRH-CRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVI 282
                  H C IG N  + + +++++   IG G  +  GS++
Sbjct: 76  -------HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLV 110

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 34/94 (36%)

Query: 218 ELGSKTTVGPHCML--------GEGSQMGDKCSV--------------------KRSVIG 249
            +G    +GP C++        G+   +G   ++                       VIG
Sbjct: 3   SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIG 62

Query: 250 RHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVI 282
               IG+NV     V++  VTIGDG  +  GSV+
Sbjct: 63  DDVWIGANV-----VILPGVTIGDGAVVGAGSVV 91

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 307
           IG+  +IG NV     V+  +VTIGDG  +Q  VI SN+ +++   +K   VG    V  
Sbjct: 8   IGKTAKIGPNV-----VIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGR 62

Query: 308 GCEYKG 313
               + 
Sbjct: 63  WTRLEN 68

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 27/129 (20%)

Query: 208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKV------ 260
               +I  +  +G+   +G +  +G+G+ +    ++    VIG +  I S   +      
Sbjct: 127 GAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFG 186

Query: 261 --------VNSVVMNHVTIGDGCSI-----------QGSVICSNAQLQERVAL-KDCQVG 300
                   V    +  V IGD   I             +VI    ++   V +  + ++G
Sbjct: 187 YAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIG 246

Query: 301 QGYVVSAGC 309
           +  +++   
Sbjct: 247 EHCIIAGQV 255

Length = 338

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 242 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVI 282
            V+RSV+    R+ S   V +SV++  V +G  C ++  VI
Sbjct: 340 VVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVI 380

Length = 425

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 16/117 (13%)

Query: 212 IIHPSAELGSKTTVGPHCMLG-----EGSQMGDKCSVKRSVIGRHCRIGSNVKV------ 260
           II+P   +  KT +G  C +G        ++G+   + RS   +   I  +V V      
Sbjct: 263 IIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEK-SVIEDDVSVGPFSRL 321

Query: 261 -VNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG---CEYKG 313
              +V+   V IG+   I+ S I  N + Q    L D  VG+   + AG   C Y G
Sbjct: 322 REGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDG 378

Length = 448

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 36.2 bits (85), Expect = 7e-04
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 6/38 (15%)

Query: 246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVI 282
           +VIG +  IG NV     V+   V IGD   I  G VI
Sbjct: 2   TVIGENVLIGPNV-----VIGGGVIIGDNVIIGAGVVI 34

Length = 36

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 43/144 (29%)

Query: 190 INRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPH------CMLGEGSQMGDKCSV 243
           I    IG+         +  N++I  S ++G   TVGP        ++GE  ++G+   +
Sbjct: 298 IVDSTIGD-------GVTITNSVIEES-KVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEI 349

Query: 244 KRSVIGRH-----------CRIGSNVKV-VNSVVMN-------HVTIGDGCSIQGSVICS 284
           K+S IG               +G NV +   ++ +N          IGD      + I  
Sbjct: 350 KKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGD-----NAFIGC 404

Query: 285 NAQLQERVALKDCQVGQGYVVSAG 308
           N+ L   V      VG    ++AG
Sbjct: 405 NSNLVAPV-----TVGDNAYIAAG 423

Length = 458

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 56/167 (33%)

Query: 183 SIQAFMDINRDVIGEANHLSGYNFSAQNNIIH-------PSAELGSK---TTVGPHCMLG 232
           +I++F + N   +        ++F   +  I+       PS     +   + +   C L 
Sbjct: 269 TIKSFYEAN---LALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSIISHGCFLR 325

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGD 273
           E       C ++ SV+G   RIG  V++ ++V+M                     + IG+
Sbjct: 326 E-------CKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGE 378

Query: 274 GCSIQGSVICSNAQLQERVALKDCQV------------GQGYVVSAG 308
              I+ ++I  NA    R+  K+  +             +GY + +G
Sbjct: 379 NTKIRNAIIDKNA----RIG-KNVVIINKDGVQEADREEEGYYIRSG 420

Length = 436

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 226 GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGC 275
           G   +L E   +G    +    IGR+  +G     +N+VVM+   IG+  
Sbjct: 59  GQDTVLEENGHIGHGAILHGCTIGRNALVG-----MNAVVMDGAVIGEES 103

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 18/76 (23%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRH-CRIGSNVKV-VNSVVMN 267
             +IH     G   T+G    +G G+ +             H C IG NV + + + V++
Sbjct: 62  GVVIHADP--GYPVTIGDDVTIGHGAVV-------------HGCTIGDNVLIGMGATVLD 106

Query: 268 HVTIGDGCSI-QGSVI 282
              IGDG  +  G+++
Sbjct: 107 GAVIGDGSIVGAGALV 122

Length = 176

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 238 GDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGD----GCSIQG--SVICSNAQLQ 289
           G+  ++KR++I ++ RIG+NV++VN    ++V   D    G  I+    V+  NA + 
Sbjct: 370 GEGTTIKRAIIDKNARIGNNVRIVNK---DNVEEADREDQGFYIRDGIVVVVKNAVIP 424

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
KOG1462	433	consensus Translation initiation factor 2B, gamma	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.98
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	99.95
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.95
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.94
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.93
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.93
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.92
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.92
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.91
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.89
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.87
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.87
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.86
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.84
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.84
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.84
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.84
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.84
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.83
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.79
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.75
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.73
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.72
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.68
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.65
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.65
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.64
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.63
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.63
PRK13627	196	carnitine operon protein CaiE; Provisional	99.61
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.58
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.58
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.58
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.57
PLN02296	269	carbonate dehydratase	99.57
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.56
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.56
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.56
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.56
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.55
PLN02472	246	uncharacterized protein	99.54
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.54
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.54
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.54
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.54
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.53
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.52
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.52
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.52
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.52
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.5
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.5
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.5
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.5
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.5
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.49
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.48
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.47
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.47
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.46
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.45
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.44
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.44
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.44
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.43
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.43
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.43
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.43
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.43
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.42
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.42
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.42
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.42
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.4
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.39
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.39
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.39
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.38
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.38
PLN02296	269	carbonate dehydratase	99.38
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.37
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.37
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.37
PLN02472	246	uncharacterized protein	99.37
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.36
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.36
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.36
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.35
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.34
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.33
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.33
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.33
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.33
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.33
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.32
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.31
PRK13627	196	carnitine operon protein CaiE; Provisional	99.31
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.31
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.3
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.3
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.29
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.29
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.28
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.28
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.27
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.26
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.25
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.25
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.25
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.24
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	99.23
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.22
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.2
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.18
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.15
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.14
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.13
PRK10191	146	putative acyl transferase; Provisional	99.12
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.12
PRK10092	183	maltose O-acetyltransferase; Provisional	99.12
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.1
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	99.1
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.08
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.07
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.07
PLN02694	294	serine O-acetyltransferase	99.07
PRK10502	182	putative acyl transferase; Provisional	99.07
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.06
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.04
PRK11132	273	cysE serine acetyltransferase; Provisional	99.04
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.03
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	99.02
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.01
PLN02357	360	serine acetyltransferase	99.0
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.0
PLN02694	294	serine O-acetyltransferase	98.99
PRK11132	273	cysE serine acetyltransferase; Provisional	98.99
PRK10502	182	putative acyl transferase; Provisional	98.99
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.97
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.97
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.96
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.96
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.96
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.95
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	98.95
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.94
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.93
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.92
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.9
PLN02739	355	serine acetyltransferase	98.89
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	98.88
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	98.88
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	98.88
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.87
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.84
PRK10191	146	putative acyl transferase; Provisional	98.81
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	98.8
PLN02357	360	serine acetyltransferase	98.79
PRK10092	183	maltose O-acetyltransferase; Provisional	98.78
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.76
PLN02739	355	serine acetyltransferase	98.76
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.75
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.68
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	98.68
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	98.57
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	98.57
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.52
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.47
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.44
PRK10122	297	GalU regulator GalF; Provisional	98.39
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	98.37
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	98.34
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.33
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	98.3
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.28
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	98.24
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.22
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	98.22
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.2
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	98.2
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	98.2
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.17
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	98.11
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.05
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	98.03
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	98.01
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	97.94
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	97.94
COG4801	277	Predicted acyltransferase [General function predic	97.93
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	97.83
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	97.78
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	97.7
COG4801	277	Predicted acyltransferase [General function predic	97.56
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	97.51
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	97.44
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	97.43
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	97.4
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.38
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.11
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	97.1
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	97.01
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	96.72
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	96.67
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	96.66
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	96.61
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	96.36
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	96.12
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	95.4
COG1664	146	CcmA Integral membrane protein CcmA involved in ce	91.86
PF04519	101	Bactofilin: Polymer-forming cytoskeletal; InterPro	89.62
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	89.35
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	87.74
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	87.18
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	84.55

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.9e-42  Score=311.31  Aligned_cols=273  Identities=35%  Similarity=0.607  Sum_probs=219.8

Q ss_pred             ccccCCCCcccCCCCCcccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHHHHHHh
Q 020813           11 SEAGSSGAKDKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl~~~l~   90 (321)
                      .+++.||+|.|.+ +.+ ++++++.++.++++....+|.++.+.+++++||.||++++.++|.|+|||+|++|+++ ++.
T Consensus       151 s~~~~pgqk~k~k-~~~-d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d-~l~  227 (433)
T KOG1462|consen  151 SEVPIPGQKGKKK-QAR-DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVID-LLS  227 (433)
T ss_pred             ccccccCcccccc-ccc-ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHH-HHh
Confidence            3689999999884 667 7999999999999999989999999999999999999999999999999999999995 778


Q ss_pred             ccccCCCCccchhHHHHHhhccccccc--CCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeE
Q 020813           91 QKDKFQSLKQDVLPYLVRSQLKSEILI--NGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  168 (321)
Q Consensus        91 ~~~~~~si~~dlip~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  168 (321)
                      ++....||+.||+|+|+++|++...-.  |+..                ++.   .+..+     .+.+.-...++.+|+
T Consensus       228 ~~~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~----------------~l~---t~~~~-----~~d~~~~~~d~ik~y  283 (433)
T KOG1462|consen  228 EKESISSFKADFLPYLVKKQFQKNPPLKKNETS----------------ILP---TPNLN-----NPDGIHSPDDRIKCY  283 (433)
T ss_pred             cCCcceeecccccchhhhhhhhcCCCccccccc----------------ccC---Ccccc-----CcccccCcccceeee
Confidence            788899999999999999998643211  1100                000   01100     000100001247899


Q ss_pred             EEEecCccceeeccCHHHHHHHchh--hccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEece
Q 020813          169 VYIASNSKYCVRLNSIQAFMDINRD--VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS  246 (321)
Q Consensus       169 ~~i~~~~~~w~~i~t~~~y~~~~~~--~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~s  246 (321)
                      +|+.+.+..+.|++|+-.|+++|++  +..-.    ++..     .+...+..  .+.++..++|+++|.|++++.|++|
T Consensus       284 ~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~----~e~~-----~~k~~~~~--~~l~g~d~iv~~~t~i~~~s~ik~S  352 (433)
T KOG1462|consen  284 AYILPTESLFVRANTLLSYMEINRDKKLKKLC----SEAK-----FVKNYVKK--VALVGADSIVGDNTQIGENSNIKRS  352 (433)
T ss_pred             EEEccCccceEEecchHHHHhhhHHHHHHHhc----cccc-----cccchhhh--eeccchhhccCCCceecccceeeee
Confidence            9999999999999999999999962  22111    1111     11111111  1556778999999999999999999


Q ss_pred             EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEeeecC
Q 020813          247 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLARKEK  321 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~~~~k  321 (321)
                      +||.||.||++++|.+|+||+||+||+|+.|++||||++++||+|+.+.+|+||.+.+|++..+..+|++.+.|+
T Consensus       353 viG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev~~~~~d  427 (433)
T KOG1462|consen  353 VIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEVLVSNED  427 (433)
T ss_pred             eecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccEeeccch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988764

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.6e-34  Score=263.55  Aligned_cols=226  Identities=24%  Similarity=0.407  Sum_probs=190.5

Q ss_pred             ccEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeecC-----------------C-CccceEEeEeHHHHHHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIRA-----------------D-LMDAHMYAFNRSVLQEV   88 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~s-----------------~-l~d~giYi~~~~vl~~~   88 (321)
                      |.++.||++.++..|++++||+|. ..+++++.+.+|+.+.++.                 + |+.+|||||++++|.++
T Consensus       128 DhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~  207 (393)
T COG0448         128 DHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKEL  207 (393)
T ss_pred             CEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHH
Confidence            599999999999999999999997 6789999999999887642                 2 68899999999999999


Q ss_pred             Hhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCc
Q 020813           89 LDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRT  164 (321)
Q Consensus        89 l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (321)
                      |++.    ....+|++|+||.+++.+                                                      
T Consensus       208 L~~~~~~~~~~~DfgkdiIp~~~~~~------------------------------------------------------  233 (393)
T COG0448         208 LEEDAKDPNSSHDFGKDIIPKLLERG------------------------------------------------------  233 (393)
T ss_pred             HHHHhcccCccccchHHHHHHHHhcC------------------------------------------------------
Confidence            8742    346899999999998875                                                      


Q ss_pred             ceeEEEEecCccceeeccCHHHHHHHchhhccccccCCC----cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCC
Q 020813          165 HKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDK  240 (321)
Q Consensus       165 ~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~  240 (321)
                       .++||  ++++||.||||+++||++|++++...+.+..    +++++... ..|++++..++.+ .+++|++||+|.. 
T Consensus       234 -~v~AY--~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~-~~pPak~~~~s~v-~nSLv~~GciI~G-  307 (393)
T COG0448         234 -KVYAY--EFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNK-NLPPAKFVNDSEV-SNSLVAGGCIISG-  307 (393)
T ss_pred             -CEEEE--eccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCC-CCCCceEecCceE-eeeeeeCCeEEEe-
Confidence             36788  7899999999999999999999986555533    33444433 4688899888876 7999999999986 


Q ss_pred             CeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCe----------EECCCcEEcCCcE
Q 020813          241 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDC----------QVGQGYVVSAGCE  310 (321)
Q Consensus       241 ~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~----------iIg~~~~V~~~~~  310 (321)
                       +|.+|+|+.+++|+++|.|.+|+||++|.||+||.|.++||++||.|++|++|.+.          +.+.-++|+.++.
T Consensus       308 -~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~~~~d~~~~~~~~~ivVv~k~~~  386 (393)
T COG0448         308 -TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKRFRSEEGIVVVPKGMV  386 (393)
T ss_pred             -EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCCcchhccccccccCCcEEEecccE
Confidence             89999999999999999999999999999999999999999999999999988754          1233356666665


Q ss_pred             EcCC
Q 020813          311 YKGE  314 (321)
Q Consensus       311 i~~~  314 (321)
                      ++.+
T Consensus       387 ~~~~  390 (393)
T COG0448         387 IKLD  390 (393)
T ss_pred             eccc
Confidence            5543

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.98  E-value=1.8e-31  Score=254.69  Aligned_cols=238  Identities=26%  Similarity=0.470  Sum_probs=202.4

Q ss_pred             CCcccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHHHHHHhccccCCCCccchhH
Q 020813           25 PGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLP  104 (321)
Q Consensus        25 ~~~~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip  104 (321)
                      ++. .++++|..+..++|+..-.......+++++++..++.+++++||.|++|-||++.|+. ++.+|++|+ .|.||+.
T Consensus       174 ~~~-~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq-~r~DfV~  250 (673)
T KOG1461|consen  174 TEQ-VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ-TRDDFVR  250 (673)
T ss_pred             Ccc-eEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhcccce-ehhhhhh
Confidence            444 8999999777777776411112257788999999999999999999999999999996 567789999 9999998


Q ss_pred             HHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCH
Q 020813          105 YLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSI  184 (321)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~  184 (321)
                      -++...+-                                                   ..+++.++.....|..++.++
T Consensus       251 GvL~~dil---------------------------------------------------g~kI~~~~~~~~~yA~rv~n~  279 (673)
T KOG1461|consen  251 GVLVDDIL---------------------------------------------------GYKIHVHVLSSIDYAARVENL  279 (673)
T ss_pred             hhhhhhhc---------------------------------------------------CCeEEEEEcChhhhhhhhccc
Confidence            77665421                                                   146788877666799999999


Q ss_pred             HHHHHHchhhccccccC----------CCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEE
Q 020813          185 QAFMDINRDVIGEANHL----------SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI  254 (321)
Q Consensus       185 ~~y~~~~~~~l~~~~~~----------~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~I  254 (321)
                      ++|..++++++.++.+.          ..+.+...+.+..|.+.+...+.++.++.||.++.||.++.|.||+||+||.|
T Consensus       280 ~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~I  359 (673)
T KOG1461|consen  280 RSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRI  359 (673)
T ss_pred             HHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEe
Confidence            99999999999887542          11233445667788899999999999999999999999999999999999999


Q ss_pred             CCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeE
Q 020813          255 GSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESL  316 (321)
Q Consensus       255 g~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~  316 (321)
                      |++++|.+|.||+||+||+||.|++|+|+++|+|++|++++ +|+||.+++|+++.++...+.
T Consensus       360 gsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~  422 (673)
T KOG1461|consen  360 GSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSK  422 (673)
T ss_pred             cCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccccc
Confidence            99999999999999999999999999999999999999995 999999999999999887743

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=6.9e-28  Score=215.04  Aligned_cols=210  Identities=17%  Similarity=0.288  Sum_probs=136.6

Q ss_pred             ccEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec-----------------CCCccceEEeEeHHHHHHHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR-----------------ADLMDAHMYAFNRSVLQEVL   89 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~-----------------s~l~d~giYi~~~~vl~~~l   89 (321)
                      |.++.+|+.+++.+|+++++|.|. .+.+.  ..++||.+.+.                 ++-+|+|||+|+|++|..++
T Consensus       121 Dvi~~~p~~~~vqfH~~~gae~TI~~t~vd--epSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~  198 (371)
T KOG1322|consen  121 DVICRMPYKEMVQFHRAHGAEITIVVTKVD--EPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRIL  198 (371)
T ss_pred             CeeecCCHHHHHHHHHhcCCceEEEEEecc--CccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhh
Confidence            589999999999999999999986 33333  35667766553                 56899999999999998776


Q ss_pred             hccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEE
Q 020813           90 DQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCV  169 (321)
Q Consensus        90 ~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  169 (321)
                         ...+||.+++||.+++.                                                       .++++
T Consensus       199 ---~~ptSiekEifP~~a~~-------------------------------------------------------~~l~a  220 (371)
T KOG1322|consen  199 ---LRPTSIEKEIFPAMAEE-------------------------------------------------------HQLYA  220 (371)
T ss_pred             ---hcccchhhhhhhhhhhc-------------------------------------------------------CceEE
Confidence               44678999999977664                                                       25678


Q ss_pred             EEecCccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEE
Q 020813          170 YIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVI  248 (321)
Q Consensus       170 ~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svI  248 (321)
                      |.  .++||+|+|++++|+++...+++..+....      ..+ .|++.+      -.++++.+-..+|++|.|++ ++|
T Consensus       221 ~~--l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~------~r~-~p~~~i------~~nvlvd~~~~iG~~C~Ig~~vvI  285 (371)
T KOG1322|consen  221 FD--LPGFWMDIGQPKDFLTGFSFYLRSLPKYTS------PRL-LPGSKI------VGNVLVDSIASIGENCSIGPNVVI  285 (371)
T ss_pred             Ee--cCchhhhcCCHHHHHHHHHHHHhhCcccCC------ccc-cCCccc------cccEeeccccccCCccEECCCceE
Confidence            84  589999999999999997777665432211      111 111222      22222323333333444443 456


Q ss_pred             CCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          249 GRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       249 g~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      |++|+|++|++|.+|.++.++.++..+.|..++++.++.||.+++|+ +|+||++++|.+.-.+.
T Consensus       286 G~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn  350 (371)
T KOG1322|consen  286 GPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVN  350 (371)
T ss_pred             CCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccccc
Confidence            66666666666666666666666666666666666666666555554 45555555555444443

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.95  E-value=6.8e-27  Score=225.79  Aligned_cols=227  Identities=22%  Similarity=0.378  Sum_probs=167.0

Q ss_pred             ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee-------------------------------------c
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI-------------------------------------R   69 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~-------------------------------------~   69 (321)
                      |.++.+|+..++.+|.++++++|..+ +++.....+|+.+.+                                     .
T Consensus       125 D~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~  204 (429)
T PRK02862        125 DQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGK  204 (429)
T ss_pred             CEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCC
Confidence            34566777778888877777766432 222222223333322                                     1


Q ss_pred             CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE  149 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (321)
                      .+++++|+|+|++++|..++.+.....++.+|++|+|++.+                                       
T Consensus       205 ~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~~~~---------------------------------------  245 (429)
T PRK02862        205 PYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDY---------------------------------------  245 (429)
T ss_pred             ceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHhccC---------------------------------------
Confidence            24889999999999997777655456688899999986532                                       


Q ss_pred             cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhc-cccccCCC----cccccCCeeeCCCCeeCCCcE
Q 020813          150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI-GEANHLSG----YNFSAQNNIIHPSAELGSKTT  224 (321)
Q Consensus       150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l-~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~  224 (321)
                                      ++++|  ..++||.|+||+++|+++|++++ ...+....    ....+. ..+.|++.+. ++.
T Consensus       246 ----------------~v~~~--~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~-~~~~~~a~~~-~~~  305 (429)
T PRK02862        246 ----------------KVQSY--LFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTR-ARYLPPSKLL-DAT  305 (429)
T ss_pred             ----------------cEEEE--EeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceecc-CCCCCCcccc-ccE
Confidence                            45677  45789999999999999999988 33322211    111222 3345666663 567


Q ss_pred             ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECC-------------------CCEECCCcEEeceEECCC
Q 020813          225 VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGSVICSN  285 (321)
Q Consensus       225 i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~-------------------~v~Ig~~~~I~~~iI~~~  285 (321)
                      +. +++||++|.| +++.|++|+||++|+||++|+|.+|+|++                   ++.||++|.|.+|+|+++
T Consensus       306 ~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~  383 (429)
T PRK02862        306 IT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN  383 (429)
T ss_pred             EE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC
Confidence            74 6999999999 88999999999999999999999999987                   699999999999999999


Q ss_pred             CEECcCcEec-------------CeEECCC-cEEcCCcEEcCCe
Q 020813          286 AQLQERVALK-------------DCQVGQG-YVVSAGCEYKGES  315 (321)
Q Consensus       286 ~~Ig~~~~i~-------------~~iIg~~-~~V~~~~~i~~~~  315 (321)
                      +.||+++++.             +++|++| ++|+.+++++.++
T Consensus       384 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (429)
T PRK02862        384 ARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGT  427 (429)
T ss_pred             cEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCC
Confidence            9999999994             3566776 6677777666543

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.94  E-value=1.6e-26  Score=220.20  Aligned_cols=226  Identities=21%  Similarity=0.303  Sum_probs=171.8

Q ss_pred             ccEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHh
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~   90 (321)
                      |.++..|+.+++..|.+++++++.. ..++.+...+|+.+.+.                ++++++|+|+|++++|..+++
T Consensus       126 D~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~  205 (380)
T PRK05293        126 DHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLI  205 (380)
T ss_pred             CEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHH
Confidence            3566678888888888887776643 23333334455555442                468999999999999976765


Q ss_pred             cc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcce
Q 020813           91 QK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  166 (321)
Q Consensus        91 ~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (321)
                      +.    ....++..|++|.|++++                                                      .+
T Consensus       206 ~~~~~~~~~~~~~~d~i~~l~~~~------------------------------------------------------~~  231 (380)
T PRK05293        206 EDEKNPNSSHDFGKNVIPLYLEEG------------------------------------------------------EK  231 (380)
T ss_pred             HHhhcCCchhhhHHHHHHHHhhcC------------------------------------------------------Ce
Confidence            31    234466789999998765                                                      24


Q ss_pred             eEEEEecCccceeeccCHHHHHHHchhhccccccCCCc---ccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeE
Q 020813          167 CCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY---NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV  243 (321)
Q Consensus       167 v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~---~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I  243 (321)
                      +++|  ..++||.++|++++|+++++.++.........   ........+.+++.|++++.+ .++.|+++|.|+.  .+
T Consensus       232 v~~~--~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v  306 (380)
T PRK05293        232 LYAY--PFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TV  306 (380)
T ss_pred             EEEE--EeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--ee
Confidence            6677  44689999999999999999988654432211   011122345567788888888 5778888888863  57


Q ss_pred             eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-----eEECCCcEEcCCcEEc
Q 020813          244 KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-----CQVGQGYVVSAGCEYK  312 (321)
Q Consensus       244 ~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-----~iIg~~~~V~~~~~i~  312 (321)
                      .+|+||++|.||++|+|.+|+|+++|.||++|.|.+|+|++++.|+.++++.+     .+||+++.|+++++|+
T Consensus       307 ~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~  380 (380)
T PRK05293        307 EHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVIG  380 (380)
T ss_pred             cceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence            78999999999999999999999999999999999999999999999999986     7899999999988764

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.93  E-value=1.4e-25  Score=217.09  Aligned_cols=227  Identities=19%  Similarity=0.362  Sum_probs=163.0

Q ss_pred             ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee-------------------------------------c
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI-------------------------------------R   69 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~-------------------------------------~   69 (321)
                      |.++.+|+..++..|.++++++|..+ +++.+...+|+.+.+                                     .
T Consensus       131 D~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~  210 (436)
T PLN02241        131 DHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEK  210 (436)
T ss_pred             CeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCEEEEEECCCCccccccccccccccccccccccc
Confidence            46778888889999999888877432 222211223333222                                     1


Q ss_pred             CCCccceEEeEeHHHHHHHHhccc-cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD-KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  148 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~-~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (321)
                      ++++++|||+|++++|..++++.. ...++.+|++|.|++++                                      
T Consensus       211 ~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g--------------------------------------  252 (436)
T PLN02241        211 PYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEG--------------------------------------  252 (436)
T ss_pred             ceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcC--------------------------------------
Confidence            379999999999999976765432 23367789999998765                                      


Q ss_pred             ccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccccccCCC----cccccCCeeeCCCCeeCCCcE
Q 020813          149 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTT  224 (321)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~  224 (321)
                                      .++++|  ..++||.|+|++++|++++++++...+....    ..+.+.. ...|++.+ .++.
T Consensus       253 ----------------~~v~~~--~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~~~  312 (436)
T PLN02241        253 ----------------YNVQAY--LFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSP-RFLPPSKI-EDCR  312 (436)
T ss_pred             ----------------CeEEEE--eeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccC-CCCCCcEe-cCCe
Confidence                            256777  4478999999999999999999875432211    1112222 22355666 4566


Q ss_pred             ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCC-------------------CEECCCcEEeceEECCC
Q 020813          225 VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSN  285 (321)
Q Consensus       225 i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~-------------------v~Ig~~~~I~~~iI~~~  285 (321)
                      +.+ ++|+++|.|+ +|.|++|+||++|.||++|+|.+|+|+++                   ++||++|.|++++|+++
T Consensus       313 i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~  390 (436)
T PLN02241        313 ITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN  390 (436)
T ss_pred             EEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC
Confidence            654 9999999999 99999999999999999999999999773                   38999999999999999


Q ss_pred             CEECcCcEecC-------eEECCCcEEcCCc-EEcCC
Q 020813          286 AQLQERVALKD-------CQVGQGYVVSAGC-EYKGE  314 (321)
Q Consensus       286 ~~Ig~~~~i~~-------~iIg~~~~V~~~~-~i~~~  314 (321)
                      +.||+++.+.+       .++|++++|++|+ .|+..
T Consensus       391 v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~  427 (436)
T PLN02241        391 ARIGKNVVIINKDGVQEADREEEGYYIRSGIVVILKN  427 (436)
T ss_pred             CEECCCcEEecccccCCccccccccEEeCCEEEEcCC
Confidence            99999998841       2445555555552 44433

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.93  E-value=1.9e-25  Score=214.54  Aligned_cols=212  Identities=21%  Similarity=0.378  Sum_probs=154.4

Q ss_pred             ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeeec-----------------------CCCccceEEeEeHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDIR-----------------------ADLMDAHMYAFNRS   83 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~~-----------------------s~l~d~giYi~~~~   83 (321)
                      |.++.+|+..++.+|.+++++++..+ .++.+...+|+.+.+.                       ++++++|+|+|+++
T Consensus       126 D~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~  205 (407)
T PRK00844        126 DHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTD  205 (407)
T ss_pred             CEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHH
Confidence            56778888889999998888877533 2333344455555442                       35899999999999


Q ss_pred             HHHHHHhc----cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCC
Q 020813           84 VLQEVLDQ----KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA  159 (321)
Q Consensus        84 vl~~~l~~----~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (321)
                      +|.+++++    +....++..|++|+|++++                                                 
T Consensus       206 ~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------  236 (407)
T PRK00844        206 ALVDALRRDAADEDSSHDMGGDIIPRLVERG-------------------------------------------------  236 (407)
T ss_pred             HHHHHHHHhhcCCcccccchhhHHHHHhccC-------------------------------------------------
Confidence            98666553    2345678889999998865                                                 


Q ss_pred             CCCCcceeEEEEe----------cCccceeeccCHHHHHHHchhhccccccCCCc----ccccCCeeeCCCCee-CCC--
Q 020813          160 PVRRTHKCCVYIA----------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAEL-GSK--  222 (321)
Q Consensus       160 ~~~~~~~v~~~i~----------~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~p~a~i-~~~--  222 (321)
                            ++++|..          ..++||.|+|++++|+++|+++|........+    ...+.... .|++.+ +..  
T Consensus       237 ------~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  309 (407)
T PRK00844        237 ------RAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPN-LPPAKFVDGGGR  309 (407)
T ss_pred             ------eEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCC-CCCceEecCCCc
Confidence                  1333422          23689999999999999999999754432211    11111111 233333 222  


Q ss_pred             cEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC
Q 020813          223 TTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD  296 (321)
Q Consensus       223 ~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~  296 (321)
                      ..+.+++.|+++|.|+ ++.|++|+||++|.|+++|+|.+|+||++|+||++|.|.+|+|++++.|++++++.+
T Consensus       310 ~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        310 VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            1234678999999998 899999999999999999999999999999999999999999999999998887754

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.92  E-value=2.2e-24  Score=208.15  Aligned_cols=211  Identities=21%  Similarity=0.364  Sum_probs=150.5

Q ss_pred             ccEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeeec-----------------------CCCccceEEeEeHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDIR-----------------------ADLMDAHMYAFNRS   83 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~~-----------------------s~l~d~giYi~~~~   83 (321)
                      |.++..|+..++..|.+++++++... .++.....+|+.+.+.                       ++++++|||+|+++
T Consensus       138 D~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~  217 (425)
T PRK00725        138 DHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNAD  217 (425)
T ss_pred             CeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCCCCEEEEEECCCCccccccCccceEEEeeEEEEeHH
Confidence            46778888889999998888777532 2332333455555442                       34889999999999


Q ss_pred             HHHHHHhc---c-ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCC
Q 020813           84 VLQEVLDQ---K-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSA  159 (321)
Q Consensus        84 vl~~~l~~---~-~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (321)
                      +|..++.+   + ....++.+|++|+|++++                                                 
T Consensus       218 ~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~-------------------------------------------------  248 (425)
T PRK00725        218 YLYELLEEDAEDPNSSHDFGKDIIPKIVEEG-------------------------------------------------  248 (425)
T ss_pred             HHHHHHHHhhcCCCccchhhHHHHHHHhccC-------------------------------------------------
Confidence            98666643   1 234567789999998764                                                 


Q ss_pred             CCCCcceeEEEEe---------cCccceeeccCHHHHHHHchhhccccccCCCcc----cccCCeeeCCCCee---CCCc
Q 020813          160 PVRRTHKCCVYIA---------SNSKYCVRLNSIQAFMDINRDVIGEANHLSGYN----FSAQNNIIHPSAEL---GSKT  223 (321)
Q Consensus       160 ~~~~~~~v~~~i~---------~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~----~~~~~~~i~p~a~i---~~~~  223 (321)
                            ++++|..         ..++||.|+|++++|+++|++++........+.    ..+... ..|++.+   +.++
T Consensus       249 ------~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~-~~~~~~~~~~~~~~  321 (425)
T PRK00725        249 ------KVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQE-QLPPAKFVFDRSGR  321 (425)
T ss_pred             ------cEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCC-CCCCCeEeccCCCC
Confidence                  2344432         235899999999999999999986543322111    111111 2233333   1221


Q ss_pred             E-ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec
Q 020813          224 T-VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK  295 (321)
Q Consensus       224 ~-i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~  295 (321)
                      . +..+++|+++|.| ++|.|++|+||++|.||++|+|.+|+||++|.||++|.|.+|+|++++.|+++++|.
T Consensus       322 ~~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~  393 (425)
T PRK00725        322 RGMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIG  393 (425)
T ss_pred             cceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEEC
Confidence            1 2348899999999 688899999999999999999999999999999999999999999999999877665

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.8e-24  Score=202.46  Aligned_cols=197  Identities=19%  Similarity=0.323  Sum_probs=133.6

Q ss_pred             ccEEEecCCccEEEeeccccccccceeecHHHHhhcCee-------------------eecCCCccceEEeEeHHHHHHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQM-------------------DIRADLMDAHMYAFNRSVLQEV   88 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~-------------------~~~s~l~d~giYi~~~~vl~~~   88 (321)
                      |.++.+|+..++.+|.++++..+..+.-..+. ..|+.+                   ...++++++|+|+|++++|+ +
T Consensus       108 Dv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~-~  185 (358)
T COG1208         108 DVLTDLDLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFD-Y  185 (358)
T ss_pred             CeeeccCHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhh-h
Confidence            57888888888889988865555321110001 112111                   33468999999999999997 4


Q ss_pred             HhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeE
Q 020813           89 LDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  168 (321)
Q Consensus        89 l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  168 (321)
                      ++ .....++..|++|+|++++.                                                      .++
T Consensus       186 i~-~~~~~~~~~~~~~~l~~~~~------------------------------------------------------~v~  210 (358)
T COG1208         186 IE-KGERFDFEEELLPALAAKGE------------------------------------------------------DVY  210 (358)
T ss_pred             cc-cCCcccchhhHHHHHHhCCC------------------------------------------------------cEE
Confidence            33 24467788899999998751                                                      356


Q ss_pred             EEEecCccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eE
Q 020813          169 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SV  247 (321)
Q Consensus       169 ~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-sv  247 (321)
                      +|  ..++||.|+|++++|.+++..++........ ........     .+.. +.+.++++|+++|.|+.++.|+. ++
T Consensus       211 ~~--~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~-~~~~~~~~-----~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~  281 (358)
T COG1208         211 GY--VFEGYWLDIGTPEDLLEANELLLRGDGKSPL-GPIEEPVV-----IIRS-AYIIGPVVIGPGAKIGPGALIGPYTV  281 (358)
T ss_pred             EE--EeCCeEEeCCCHHHHHHHHHHHHhccccccc-cccccccc-----cccc-ceEeCCEEECCCCEECCCCEECCCcE
Confidence            66  4477999999999999999998864332210 00000000     0233 44455555666666666666655 68


Q ss_pred             ECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECc
Q 020813          248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE  290 (321)
Q Consensus       248 Ig~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~  290 (321)
                      ||++|.||+++.|.+|+||++|.|++++.|.+|+|+.+|+||+
T Consensus       282 ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~  324 (358)
T COG1208         282 IGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA  324 (358)
T ss_pred             ECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence            8888888888888888888888888888888888888888887

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.91  E-value=1.3e-23  Score=198.74  Aligned_cols=208  Identities=22%  Similarity=0.396  Sum_probs=121.0

Q ss_pred             cEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec----------------CC-------CccceEEeEeHHH
Q 020813           29 NIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR----------------AD-------LMDAHMYAFNRSV   84 (321)
Q Consensus        29 ~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~----------------s~-------l~d~giYi~~~~v   84 (321)
                      .++..|+..++..|.+++++.+.. ...+.+....++.+.+.                +.       ++++|+|+|++++
T Consensus       121 ~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~  200 (361)
T TIGR02091       121 HIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDV  200 (361)
T ss_pred             EEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHH
Confidence            455566666777777666655542 22332233334333221                22       7899999999999


Q ss_pred             HHHHHhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCC
Q 020813           85 LQEVLDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAP  160 (321)
Q Consensus        85 l~~~l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (321)
                      |..++.+.    ....++.+|+++.|++++                                                  
T Consensus       201 l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~--------------------------------------------------  230 (361)
T TIGR02091       201 LKELLEEDADDPESSHDFGKDIIPRALEEG--------------------------------------------------  230 (361)
T ss_pred             HHHHHHHHhhcCCcccccHHHHHHHHhhcC--------------------------------------------------
Confidence            86665531    224567789999988753                                                  


Q ss_pred             CCCcceeEEEEecCccceeeccCHHHHHHHchhhccccccCCCc----ccccCCeeeCCCCeeCCCcEECCCCEECCCCE
Q 020813          161 VRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGY----NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ  236 (321)
Q Consensus       161 ~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~----~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~  236 (321)
                           ++++|.  .++||.|+||+++|++++++++.........    ...+....++|++.+++++             
T Consensus       231 -----~v~~~~--~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------  290 (361)
T TIGR02091       231 -----SVQAYL--FSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDA-------------  290 (361)
T ss_pred             -----ceEEEe--eCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCC-------------
Confidence                 456774  3689999999999999999998754322110    0001112233344444333             


Q ss_pred             ECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813          237 MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       237 I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~  312 (321)
                           .+.+|+||++|.|+++ +|.+|+|+++|.|+++|.|.+|+|++++.|+.++.|.+|+||+++.|++++.+.
T Consensus       291 -----~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       291 -----QVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             -----EEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence                 3333455555555544 455555555555555555555555555555555555555555555555555543

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.89  E-value=1.1e-22  Score=193.08  Aligned_cols=210  Identities=17%  Similarity=0.267  Sum_probs=120.8

Q ss_pred             ccEEEecCCccEEEeeccccccccce-eecHHHHhhcC---------ee-ee-------cCCCccceEEeEeHHHHHHHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVG---------QM-DI-------RADLMDAHMYAFNRSVLQEVL   89 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~---------~~-~~-------~s~l~d~giYi~~~~vl~~~l   89 (321)
                      |.++.+|+..++.+|.++++++|..+ +++......++         .+ .+       ...++++|||+|++++|..++
T Consensus       123 D~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l  202 (369)
T TIGR02092       123 HMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELL  202 (369)
T ss_pred             CEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHH
Confidence            56788999999999988888876532 22211112221         11 11       134789999999999876565


Q ss_pred             hcc--ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCccee
Q 020813           90 DQK--DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  167 (321)
Q Consensus        90 ~~~--~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  167 (321)
                      ++.  ....++-.|+++.+++.                                                       .++
T Consensus       203 ~~~~~~~~~~~~~d~i~~~~~~-------------------------------------------------------~~v  227 (369)
T TIGR02092       203 YECIQRGKLTSLEELIRENLKE-------------------------------------------------------LNI  227 (369)
T ss_pred             HHHhhcCccccHHHHHHHHhcc-------------------------------------------------------CcE
Confidence            421  11222334677766542                                                       235


Q ss_pred             EEEEecCccceeeccCHHHHHHHchhhccccccCCCcccccCC----eeeCCCCeeCCCcEECCCCEECCCCEECCCCeE
Q 020813          168 CVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQN----NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV  243 (321)
Q Consensus       168 ~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~----~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I  243 (321)
                      ++|  ..++||.|+||+++|++++++++........+......    ..+.+++.|++                  ++.|
T Consensus       228 ~~~--~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~------------------~~~i  287 (369)
T TIGR02092       228 NAY--EYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAE------------------NSKV  287 (369)
T ss_pred             EEE--ecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcC------------------CCEE
Confidence            666  45789999999999999999998764321100000000    00113333333                  3344


Q ss_pred             eceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          244 KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       244 ~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      .+|+||++|+|+  +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+|+||++++|++++.+.+.
T Consensus       288 ~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~  356 (369)
T TIGR02092       288 ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT  356 (369)
T ss_pred             EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence            445555555554  245556666666666666666666666666666666666666666666665555543

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.87  E-value=1.7e-21  Score=183.84  Aligned_cols=213  Identities=16%  Similarity=0.236  Sum_probs=130.4

Q ss_pred             EEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee----------------cCCCccceEEeEeHHHHHHHHhcc
Q 020813           30 IIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI----------------RADLMDAHMYAFNRSVLQEVLDQK   92 (321)
Q Consensus        30 l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~----------------~s~l~d~giYi~~~~vl~~~l~~~   92 (321)
                      ++..|+..++..|.+++++++... +++.  ...++.+.+                .++++++|+|+|++.+++. +.+.
T Consensus       109 ~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~-l~~~  185 (353)
T TIGR01208       109 LIQDGISRFVKSFEEKDYDALILLTKVRD--PTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEA-IKNI  185 (353)
T ss_pred             ecCccHHHHHHHHHhcCCCcEEEEEECCC--hhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEECHHHHHH-HHhc
Confidence            445666667777877777765422 2211  112222211                2578999999999988864 4321


Q ss_pred             c---cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEE
Q 020813           93 D---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCV  169 (321)
Q Consensus        93 ~---~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  169 (321)
                      .   .....-.|+++.|+++|                                                      .++++
T Consensus       186 ~~~~~~e~~l~d~l~~l~~~g------------------------------------------------------~~v~~  211 (353)
T TIGR01208       186 KPSWRGELEITDAIQWLIEKG------------------------------------------------------YKVGG  211 (353)
T ss_pred             CCCCCCcEEHHHHHHHHHHcC------------------------------------------------------CeEEE
Confidence            1   11111357788887665                                                      24667


Q ss_pred             EEecCccceeeccCHHHHHHHchhhccccc-cCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEE
Q 020813          170 YIASNSKYCVRLNSIQAFMDINRDVIGEAN-HLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  248 (321)
Q Consensus       170 ~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~-~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svI  248 (321)
                      |  ..++||.+++++++|+++++.++.+.. .+.+   ......+.+++.|++++.| .++.|+++|.||++|.|++++|
T Consensus       212 ~--~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~---i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i  285 (353)
T TIGR01208       212 S--KVTGWWKDTGKPEDLLDANRLILDEVEREVQG---VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYI  285 (353)
T ss_pred             E--EeCcEEEeCCCHHHHHHHHHHHHhhcccccCC---cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEE
Confidence            7  457899999999999999999987421 1111   1223445566666666666 5666666666666666666666


Q ss_pred             CCCCEECCCcEEe-----ceEECCCCEECCC-cEEeceEECCCCEECcCcEec---CeEECCCcEE
Q 020813          249 GRHCRIGSNVKVV-----NSVVMNHVTIGDG-CSIQGSVICSNAQLQERVALK---DCQVGQGYVV  305 (321)
Q Consensus       249 g~~~~Ig~~~~I~-----~siI~~~v~Ig~~-~~I~~~iI~~~~~Ig~~~~i~---~~iIg~~~~V  305 (321)
                      +++|.||++|.|.     +|+|+++++|+.+ +.+.++++++++.|++++.+.   +.++|+.++|
T Consensus       286 ~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~  351 (353)
T TIGR01208       286 GPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQV  351 (353)
T ss_pred             CCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCcee
Confidence            6666666665553     6666666666666 366667777777777666664   2455555554

Alternate name: dTDP-D-glucose synthase

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.1e-22  Score=176.49  Aligned_cols=235  Identities=17%  Similarity=0.302  Sum_probs=161.1

Q ss_pred             CCccEEEeecccccccc-ceeecHHHHhhcCeee-----------------ecCCCccceEEeEeHHHHHHHHhccccCC
Q 020813           35 PTKQFLLHIATGAELEK-DTRIRKSILRAVGQMD-----------------IRADLMDAHMYAFNRSVLQEVLDQKDKFQ   96 (321)
Q Consensus        35 ~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~-----------------~~s~l~d~giYi~~~~vl~~~l~~~~~~~   96 (321)
                      +.+|+..|...++..+. ...+.++...+||.+.                 +-||.+++|||+|++++|+.+.+-..   
T Consensus       123 l~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~---  199 (407)
T KOG1460|consen  123 LQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYR---  199 (407)
T ss_pred             HHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHH---
Confidence            45678888888877765 4566777777887752                 34899999999999999975532111   


Q ss_pred             CCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEecCcc
Q 020813           97 SLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSK  176 (321)
Q Consensus        97 si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  176 (321)
                       -++|+.-.  .+++..  + ...++       +.-..+.+++..             -.|      ...+|+|  ...+
T Consensus       200 -q~~~~~~~--~~~~~~--l-~~g~~-------d~irLeqDvlsp-------------Lag------~k~lY~y--~t~~  245 (407)
T KOG1460|consen  200 -QRQDLLEV--EKDLPL--L-QPGPA-------DFIRLEQDVLSP-------------LAG------SKQLYAY--ETTD  245 (407)
T ss_pred             -HHHhhhhh--hhcccc--c-CCCcc-------ceEEeechhhhh-------------hcC------CCceEEE--eccc
Confidence             11221111  011100  0 00000       000111122210             011      1356777  6789


Q ss_pred             ceeeccCHHHHHHHchhhccccc-----cCC---C-cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceE
Q 020813          177 YCVRLNSIQAFMDINRDVIGEAN-----HLS---G-YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV  247 (321)
Q Consensus       177 ~w~~i~t~~~y~~~~~~~l~~~~-----~~~---~-~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~sv  247 (321)
                      ||..+.|..+-+.+++.+|....     .+.   + ..++-.+++|||+|++++.+.||+|+.||++++||+|+.|++|+
T Consensus       246 fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sI  325 (407)
T KOG1460|consen  246 FWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESI  325 (407)
T ss_pred             HHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeee
Confidence            99999999888888887765211     111   1 12455689999999999999999999999999999999999999


Q ss_pred             ECCCCEECCCcEEeceEECCCCEECCCcEEec--------------eEECCCCEECcCcEecCeEECCCcEEc
Q 020813          248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG--------------SVICSNAQLQERVALKDCQVGQGYVVS  306 (321)
Q Consensus       248 Ig~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~--------------~iI~~~~~Ig~~~~i~~~iIg~~~~V~  306 (321)
                      |-++|.|.+|+++-+|+|+.++.||..+++++              +++|..+.+++-+.+.+|++-++-.+.
T Consensus       326 Il~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~  398 (407)
T KOG1460|consen  326 ILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELN  398 (407)
T ss_pred             eccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCccc
Confidence            99999999999999999999999999999975              567777777777777777666655443

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.86  E-value=8.6e-21  Score=185.08  Aligned_cols=170  Identities=14%  Similarity=0.243  Sum_probs=124.2

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|+|+|++++|.++++..    ...+..-.|+++.|++++                                   
T Consensus       168 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g-----------------------------------  212 (459)
T PRK14355        168 IREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEG-----------------------------------  212 (459)
T ss_pred             ccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCC-----------------------------------
Confidence            36889999999999765555421    111222358888888765                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccc--eeeccCHHHHHHHchhhccccc---------cCCCc-ccccCCeee
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKY--CVRLNSIQAFMDINRDVIGEAN---------HLSGY-NFSAQNNII  213 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~~~~---------~~~~~-~~~~~~~~i  213 (321)
                                         .++.+|  +.++|  |.+++++++|+++++.++....         .+... ..+..++.|
T Consensus       213 -------------------~~v~~~--~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~i  271 (459)
T PRK14355        213 -------------------LRCLAF--PVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVI  271 (459)
T ss_pred             -------------------CeEEEE--EcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEE
Confidence                               256677  44566  9999999999999875543210         11111 123445556


Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      ++++.|++++.|++++.||++|.|+.++.|.+|+||++|+|++++.|.+++|++++.||+++.+. ++.|++++.||.++
T Consensus       272 g~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~  351 (459)
T PRK14355        272 GRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFV  351 (459)
T ss_pred             cCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence            66677777777777888888888888888989999999999999999999999999999999887 78888888888776


Q ss_pred             Eec
Q 020813          293 ALK  295 (321)
Q Consensus       293 ~i~  295 (321)
                      .++
T Consensus       352 ~~~  354 (459)
T PRK14355        352 ETK  354 (459)
T ss_pred             ccc
Confidence            443

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.84  E-value=4.4e-20  Score=179.91  Aligned_cols=182  Identities=15%  Similarity=0.195  Sum_probs=127.2

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|||+|++++|+.+++.-.    .....-.|+++.+++.+                                   
T Consensus       169 ~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g-----------------------------------  213 (456)
T PRK14356        169 TGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEG-----------------------------------  213 (456)
T ss_pred             cCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCC-----------------------------------
Confidence            567899999999999876654211    11112347777776544                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccccc--C-CC-------cccccCCeeeCC
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANH--L-SG-------YNFSAQNNIIHP  215 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~--~-~~-------~~~~~~~~~i~p  215 (321)
                                         .++.+|......+|.+++++++|.+++..+......  + .+       ..+....+.|++
T Consensus       214 -------------------~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~  274 (456)
T PRK14356        214 -------------------MNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEP  274 (456)
T ss_pred             -------------------CeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECC
Confidence                               245565332233689999999999987655432110  0 11       112233445555


Q ss_pred             CCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          216 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++.|.+++.+++++.||++|.|+++|.|.+|+||++|.|++++.|.+++|+++|.||+++.|. +++|+++++||+++.+
T Consensus       275 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i  354 (456)
T PRK14356        275 GAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM  354 (456)
T ss_pred             CCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence            555555566666788999999999999999999999999999999999999999999999997 8899999988888877


Q ss_pred             cCeEECCCcEE
Q 020813          295 KDCQVGQGYVV  305 (321)
Q Consensus       295 ~~~iIg~~~~V  305 (321)
                      .+++|++++.+
T Consensus       355 ~~~~i~~~~~i  365 (456)
T PRK14356        355 KKAVLGKGAKA  365 (456)
T ss_pred             eeeEecCCcEe
Confidence            66555554433

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.84  E-value=8.8e-20  Score=176.46  Aligned_cols=169  Identities=13%  Similarity=0.153  Sum_probs=96.6

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|+|+|++++|..++....    .....-.|+++.+++.+                                   
T Consensus       160 ~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g-----------------------------------  204 (430)
T PRK14359        160 IKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKG-----------------------------------  204 (430)
T ss_pred             ceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcC-----------------------------------
Confidence            357899999999999986654211    11223357778777654                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccccc----------CCCcccccCCeeeCC
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANH----------LSGYNFSAQNNIIHP  215 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~----------~~~~~~~~~~~~i~p  215 (321)
                                         .++.+|.. ...+|.+++++++|++++..+..+...          .....+...++.|.+
T Consensus       205 -------------------~~v~~~~~-~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g  264 (430)
T PRK14359        205 -------------------ETIKAVFV-DEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEG  264 (430)
T ss_pred             -------------------CeEEEEEc-CCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcC
Confidence                               24566633 246999999999999998655432110          000112222333333


Q ss_pred             CCeeCCCcEECCC-----CEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCC----------EECCCcEEece
Q 020813          216 SAELGSKTTVGPH-----CMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHV----------TIGDGCSIQGS  280 (321)
Q Consensus       216 ~a~i~~~~~i~~~-----~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v----------~Ig~~~~I~~~  280 (321)
                      .+.+++++.|+++     +.|+++|.|++ +.|.+|+||++|.|++++.|.+|+|+++|          +||+++.|++|
T Consensus       265 ~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~  343 (430)
T PRK14359        265 ECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDC  343 (430)
T ss_pred             ceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCC
Confidence            3334444444333     34444554433 34456677777777777766666555555          44555555666


Q ss_pred             EECCCCEECcCcEe
Q 020813          281 VICSNAQLQERVAL  294 (321)
Q Consensus       281 iI~~~~~Ig~~~~i  294 (321)
                      +||+++.||+++++
T Consensus       344 ~Ig~~~~ig~~~~~  357 (430)
T PRK14359        344 EIDEGTNIGAGTIT  357 (430)
T ss_pred             EECCCCEECCCceE
Confidence            66666666665544

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.84  E-value=8.1e-20  Score=179.24  Aligned_cols=185  Identities=15%  Similarity=0.210  Sum_probs=122.5

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      .+++++|+|+|++++|..++++..    .....-.|++++|++++                                   
T Consensus       171 ~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g-----------------------------------  215 (482)
T PRK14352        171 IREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAG-----------------------------------  215 (482)
T ss_pred             cceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCC-----------------------------------
Confidence            346899999999999976654211    11222368888888765                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHH------HHHchhhcccccc-----CCC-cccccCCeee
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAF------MDINRDVIGEANH-----LSG-YNFSAQNNII  213 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y------~~~~~~~l~~~~~-----~~~-~~~~~~~~~i  213 (321)
                                         .++++|  +.++||.++|+.+.|      ..+++.++.....     +.+ ..++..+++|
T Consensus       216 -------------------~~V~~~--~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~i  274 (482)
T PRK14352        216 -------------------HRVGAH--HADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTI  274 (482)
T ss_pred             -------------------CeEEEE--ecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEE
Confidence                               246666  568899999988777      5555554432111     010 1234456677


Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      ++++.|++++.|++++.||++|.|+++|.|.+|+||++|.|+. +.+.+++|++++.||+++.+. +++|++++.||.++
T Consensus       275 g~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~  353 (482)
T PRK14352        275 GRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFV  353 (482)
T ss_pred             CCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcE
Confidence            7777777777887888888888888888888888888888764 667777777777777777775 66666666555444


Q ss_pred             Ee-----------------cCeEECCCcEEcCCcEE
Q 020813          293 AL-----------------KDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       293 ~i-----------------~~~iIg~~~~V~~~~~i  311 (321)
                      .+                 .+++||+++.|++++.+
T Consensus       354 ~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i  389 (482)
T PRK14352        354 ETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVF  389 (482)
T ss_pred             EEcccEECCCcEEccCceecccEECCCcEECCCcEE
Confidence            33                 34555555666655544

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.84  E-value=4.6e-20  Score=179.84  Aligned_cols=172  Identities=15%  Similarity=0.190  Sum_probs=115.8

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|+|+|++++|.+++++-.    ..+.+-.|++|.+++++.                                  
T Consensus       165 ~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~----------------------------------  210 (456)
T PRK09451        165 IQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGR----------------------------------  210 (456)
T ss_pred             ccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCC----------------------------------
Confidence            357999999999999876664311    122234699999988762                                  


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEe----cCccc--eeeccCHHHHHHHch--hhccccccC-CC-cccccCCeeeCC
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIA----SNSKY--CVRLNSIQAFMDINR--DVIGEANHL-SG-YNFSAQNNIIHP  215 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~----~~~~~--w~~i~t~~~y~~~~~--~~l~~~~~~-~~-~~~~~~~~~i~p  215 (321)
                                          ++.+|..    ...+|  |.+++++++|+++++  .++.....+ .+ .........+++
T Consensus       211 --------------------~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~  270 (456)
T PRK09451        211 --------------------EIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR  270 (456)
T ss_pred             --------------------eEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence                                3445521    13466  677999999999874  232221110 11 001112345666


Q ss_pred             CCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          216 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++.|++++.|.+++.||++|.|+++|.|++|+||++|.|++++.|.+|+|++++.||+++.|. ++.+++++.||+++.+
T Consensus       271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i  350 (456)
T PRK09451        271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM  350 (456)
T ss_pred             CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence            777777777777778888888888888877888888888888888888888888888877776 6777777776666555


Q ss_pred             c
Q 020813          295 K  295 (321)
Q Consensus       295 ~  295 (321)
                      .
T Consensus       351 ~  351 (456)
T PRK09451        351 K  351 (456)
T ss_pred             e
Confidence            3

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.84  E-value=2.1e-19  Score=174.73  Aligned_cols=189  Identities=12%  Similarity=0.176  Sum_probs=108.4

Q ss_pred             CCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           71 DLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      ++.++|+|+|++..|..++++..    .....-.|+++.|++.+                                    
T Consensus       170 ~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g------------------------------------  213 (446)
T PRK14353        170 TLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEG------------------------------------  213 (446)
T ss_pred             eEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCC------------------------------------
Confidence            57889999999987755554311    11112246677777755                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc---------cccCCCc-ccccCCeeeCCC
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE---------ANHLSGY-NFSAQNNIIHPS  216 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~---------~~~~~~~-~~~~~~~~i~p~  216 (321)
                                        .+++++.. ...+|.+++++++|.+++..+...         ...+.+. .+......|+++
T Consensus       214 ------------------~~v~~~~~-~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~  274 (446)
T PRK14353        214 ------------------LRVAVVEA-PEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRD  274 (446)
T ss_pred             ------------------CeEEEEec-ChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCC
Confidence                              24556532 236799999999998887533211         0001110 123334455555


Q ss_pred             CeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec----------------
Q 020813          217 AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG----------------  279 (321)
Q Consensus       217 a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~----------------  279 (321)
                      +.|++++.|++++.|+++|.|+.++.|.+++||++|+||+++.|. +|+|+++|.||++|.+.+                
T Consensus       275 ~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~  354 (446)
T PRK14353        275 VVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIG  354 (446)
T ss_pred             CEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEc
Confidence            555555555555666666666655555566777777777777665 566666666666665544                


Q ss_pred             -eEECCCCEECcCcEe--------cCeEECCCcEEcCCcEEcCC
Q 020813          280 -SVICSNAQLQERVAL--------KDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       280 -~iI~~~~~Ig~~~~i--------~~~iIg~~~~V~~~~~i~~~  314 (321)
                       ++|++++.||+++++        .+++||++++|++++.+.+.
T Consensus       355 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~  398 (446)
T PRK14353        355 DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP  398 (446)
T ss_pred             CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence             455556666665443        13444555444444444433

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.83  E-value=1.2e-19  Score=176.42  Aligned_cols=176  Identities=17%  Similarity=0.248  Sum_probs=124.9

Q ss_pred             CCccceEEeEeHHHHHHHHhcccc----CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           71 DLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~~~l~~~~~----~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      +++++|+|+|++++|..+++....    .+..-.++++.|++++                                    
T Consensus       162 ~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g------------------------------------  205 (451)
T TIGR01173       162 KEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADG------------------------------------  205 (451)
T ss_pred             cEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCC------------------------------------
Confidence            467899999999997665543111    1112247778877765                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccc--eeeccCHHHHHHHchhhccccc--------cC--CCcccccCCeeeC
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKY--CVRLNSIQAFMDINRDVIGEAN--------HL--SGYNFSAQNNIIH  214 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~~~~--------~~--~~~~~~~~~~~i~  214 (321)
                                        .++++|  +.++|  |.+++++++|.+++..+..+..        .+  ...........|+
T Consensus       206 ------------------~~v~~~--~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig  265 (451)
T TIGR01173       206 ------------------ETVRAV--QVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIG  265 (451)
T ss_pred             ------------------CeEEEE--EcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEEC
Confidence                              245666  44666  8999999999877654432110        01  1111234455667


Q ss_pred             CCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcE
Q 020813          215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVA  293 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~  293 (321)
                      +++.|++++.|++++.||++|.|+++|.|++++||++|.|++++.|.+++|+++|.||+++.|. +++|++++.|++++.
T Consensus       266 ~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~  345 (451)
T TIGR01173       266 RDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVE  345 (451)
T ss_pred             CCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEcccee
Confidence            7777777778877888888889998888989999999999999999999999999999998887 788888888888776


Q ss_pred             ecCeEECCC
Q 020813          294 LKDCQVGQG  302 (321)
Q Consensus       294 i~~~iIg~~  302 (321)
                      +.++.||++
T Consensus       346 i~~~~ig~~  354 (451)
T TIGR01173       346 TKNARIGKG  354 (451)
T ss_pred             ecCcEECCC
Confidence            655544443

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.79  E-value=8.5e-19  Score=171.83  Aligned_cols=145  Identities=13%  Similarity=0.107  Sum_probs=103.8

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchh-hcccccc----------CCC-cccccCCeeeCCCCeeCCCcEECCCCEECC
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRD-VIGEANH----------LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGE  233 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~-~l~~~~~----------~~~-~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~  233 (321)
                      ++++|  +.+++|..++...+|+.+++. ++.....          ..+ ..+...+..|++++.|++++.|.+++.||+
T Consensus       216 ~i~~~--~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~  293 (481)
T PRK14358        216 QVRAF--KLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVAD  293 (481)
T ss_pred             eEEEE--ecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECC
Confidence            45666  456788888887777666654 3322110          001 111234455666667777777777777899


Q ss_pred             CCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-----------------
Q 020813          234 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-----------------  295 (321)
Q Consensus       234 ~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-----------------  295 (321)
                      +|.|+.+|.|++|+||++|.|++++.|.+++|++++.||+++.|. +++|++++.|++++.|.                 
T Consensus       294 ~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~  373 (481)
T PRK14358        294 GVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAGVKAGHLAYLG  373 (481)
T ss_pred             CCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCCcccCceEEEC
Confidence            999999999999999999999999999999999999999999987 78888888888866643                 


Q ss_pred             CeEECCCcEEcCCcEEc
Q 020813          296 DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       296 ~~iIg~~~~V~~~~~i~  312 (321)
                      +++||+++.|++++.+.
T Consensus       374 ~~~ig~~~~ig~~~~i~  390 (481)
T PRK14358        374 DVTIGAETNVGAGTIVA  390 (481)
T ss_pred             CeEEcCCceEcCCEEEe
Confidence            35566666666666554

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=9.1e-18  Score=155.53  Aligned_cols=194  Identities=16%  Similarity=0.252  Sum_probs=131.5

Q ss_pred             CccceEEeEeHHHHHHHHhc----cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813           72 LMDAHMYAFNRSVLQEVLDQ----KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  147 (321)
Q Consensus        72 l~d~giYi~~~~vl~~~l~~----~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (321)
                      .+|+|+|+|+...|..+|..    |...+..-.|+|-.+...+                                     
T Consensus       170 eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g-------------------------------------  212 (460)
T COG1207         170 EINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEG-------------------------------------  212 (460)
T ss_pred             EEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCC-------------------------------------
Confidence            79999999999988777753    2333444455555554443                                     


Q ss_pred             cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc---cccCCC-------cccccCCeeeCCCC
Q 020813          148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE---ANHLSG-------YNFSAQNNIIHPSA  217 (321)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~---~~~~~~-------~~~~~~~~~i~p~a  217 (321)
                                       .++.++......-..-+++.....++.+.+..+   ..+..+       ..++.....|.+.+
T Consensus       213 -----------------~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dv  275 (460)
T COG1207         213 -----------------EKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDV  275 (460)
T ss_pred             -----------------CeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCce
Confidence                             244555332222334455555555444433211   111111       12334455556666


Q ss_pred             eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          218 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      .|.+++.+..++.||++|+||.+|.|++|.||+|+.|.+.+.|.+|.|++++.||+.++++ ++.++++++||..+.+++
T Consensus       276 vI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~  355 (460)
T COG1207         276 VIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK  355 (460)
T ss_pred             EEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEec
Confidence            6666777777778899999999999999999999999999999999999999999999999 999999999999999877


Q ss_pred             eEECCCc-----------EEcCCcEEcCCeEeee
Q 020813          297 CQVGQGY-----------VVSAGCEYKGESLARK  319 (321)
Q Consensus       297 ~iIg~~~-----------~V~~~~~i~~~~~~~~  319 (321)
                      +.||+++           .|++++.|+.+++.+.
T Consensus       356 a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcN  389 (460)
T COG1207         356 ATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCN  389 (460)
T ss_pred             ccccCCccccceeeeccceecCCceeccceEEEc
Confidence            7666553           4444455554454443

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=6.3e-17  Score=157.82  Aligned_cols=135  Identities=19%  Similarity=0.311  Sum_probs=81.8

Q ss_pred             eeEEEEecCccc--eeeccCHHHHHHHchhhccccc--------c-CCC-cccccCCeeeCCCCeeCCCcEECCCCEECC
Q 020813          166 KCCVYIASNSKY--CVRLNSIQAFMDINRDVIGEAN--------H-LSG-YNFSAQNNIIHPSAELGSKTTVGPHCMLGE  233 (321)
Q Consensus       166 ~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~~~~--------~-~~~-~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~  233 (321)
                      ++++|.  .+++  |.++.+++++..++..+.....        . +.. ..++..++.|++++.|++++.+++++.||+
T Consensus       211 ~v~~~~--~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~  288 (458)
T PRK14354        211 KVGAYQ--TEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGE  288 (458)
T ss_pred             eEEEEe--cCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECC
Confidence            456663  3545  4566789888877654321110        0 111 112333444555555555555656667777


Q ss_pred             CCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCc
Q 020813          234 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGY  303 (321)
Q Consensus       234 ~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~  303 (321)
                      +|.|++++.|.+|+||++|.|++ +.+.+++|+++|.||++|.|. +++|++++.|++++.+.+++|++++
T Consensus       289 ~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~  358 (458)
T PRK14354        289 DCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGT  358 (458)
T ss_pred             CCEECCCcEEeccEECCCCEEEE-EEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCC
Confidence            77777777777777777777763 566677777777777777776 6777777777766666444444433

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.73  E-value=4e-17  Score=144.60  Aligned_cols=137  Identities=20%  Similarity=0.267  Sum_probs=106.1

Q ss_pred             CccceeeccCHHHHHHHchhhccccccCC-Cccc-ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECC
Q 020813          174 NSKYCVRLNSIQAFMDINRDVIGEANHLS-GYNF-SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGR  250 (321)
Q Consensus       174 ~~~~w~~i~t~~~y~~~~~~~l~~~~~~~-~~~~-~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~  250 (321)
                      .++||.|+   ++|+++|+++|....... .... .....+++.++.|++++.+.+++.||+++.|+.++.|.. ++||+
T Consensus        45 ~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~  121 (231)
T TIGR03532        45 LFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGE  121 (231)
T ss_pred             EEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECC
Confidence            47899999   999999999987643100 0000 011113455566666666667777777777777777764 89999


Q ss_pred             CCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcC
Q 020813          251 HCRIGSNVKVV-NSVVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       251 ~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~  313 (321)
                      +|.|++++.|. +++|+++|.||.++.|.+         ++|++++.||+++.+ .++.||++++|++++.+.+
T Consensus       122 ~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~  195 (231)
T TIGR03532       122 GTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTE  195 (231)
T ss_pred             CCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            99999999996 899999999999999974         899999999999988 5899999999999998754

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.72  E-value=1.9e-16  Score=154.01  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=16.6

Q ss_pred             CCccceEEeEeHHHHHHHHh
Q 020813           71 DLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~~~l~   90 (321)
                      +++++|+|+|++++|.++++
T Consensus       160 ~~~~~GiYv~~~~~l~~~~~  179 (448)
T PRK14357        160 KEINTGIYVFSGDFLLEVLP  179 (448)
T ss_pred             cEEEeEEEEEEHHHHHHHHH
Confidence            58999999999999766554

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.68  E-value=1.1e-15  Score=128.65  Aligned_cols=86  Identities=22%  Similarity=0.370  Sum_probs=61.5

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCE
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQ  287 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~  287 (321)
                      ...+|++++.|++++.+.++++|+++|.|++++.|+. ++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.
T Consensus        16 ~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~   95 (163)
T cd05636          16 GPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVN   95 (163)
T ss_pred             CCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCE
Confidence            3455666666666666666677777777777777763 777777777777777777777777777777777777777777


Q ss_pred             ECcCcEe
Q 020813          288 LQERVAL  294 (321)
Q Consensus       288 Ig~~~~i  294 (321)
                      |++++.+
T Consensus        96 I~~~~~i  102 (163)
T cd05636          96 LGAGTIT  102 (163)
T ss_pred             ECCCcEE
Confidence            7777765

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.65  E-value=4.3e-15  Score=144.59  Aligned_cols=101  Identities=21%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQL  288 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~I  288 (321)
                      ...+++++.|++++.|++++.||++|.|++++.|.+|+||++|.|+ ++.+.+|+|+++|.||++|.|. +++|++++.|
T Consensus       262 ~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~I  340 (450)
T PRK14360        262 TVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRI  340 (450)
T ss_pred             CEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEE
Confidence            3445555555555566666666666666666666666666665553 3444555555555555555554 4555555555


Q ss_pred             CcCcEe-----------------cCeEECCCcEEcCCcEE
Q 020813          289 QERVAL-----------------KDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       289 g~~~~i-----------------~~~iIg~~~~V~~~~~i  311 (321)
                      ++++.+                 .+++||+++.|++++.+
T Consensus       341 g~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~  380 (450)
T PRK14360        341 GNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTIT  380 (450)
T ss_pred             CCCEEEeccccCCCcEeccceecCCceecCCcEECcccee
Confidence            555544                 34455555555555544

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.65  E-value=3.9e-15  Score=125.35  Aligned_cols=106  Identities=25%  Similarity=0.409  Sum_probs=91.7

Q ss_pred             cccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-------
Q 020813          206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-------  278 (321)
Q Consensus       206 ~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-------  278 (321)
                      ......+|++++.|++++.+.++++|+++|.|++++.|.+|+|++++.|+.++.+.+|+|++++.|++++.+.       
T Consensus        31 ~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~  110 (163)
T cd05636          31 YIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDDK  110 (163)
T ss_pred             EEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCCc
Confidence            3344667788888888888888899999999999999999999999999999999999999999999999884       


Q ss_pred             ------------------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813          279 ------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  311 (321)
Q Consensus       279 ------------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i  311 (321)
                                        +++|++++.||.++.|. ++.|+++++|++|+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636         111 PVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             ceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence                              47888888888887775 7888888888887765

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.64  E-value=4.1e-15  Score=128.11  Aligned_cols=103  Identities=21%  Similarity=0.371  Sum_probs=80.7

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEE
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVI  282 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I-----~~siI~~~v~Ig~~~~I~~~iI  282 (321)
                      .|++++.|++++.+.+++.||++|.|+.+|.|.    ..+||++|.||++|.|     .+|+|+++++|++++.|.+|+|
T Consensus        10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siI   89 (192)
T TIGR02287        10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIV   89 (192)
T ss_pred             cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEE
Confidence            445566666666665666666777776666665    4689999999999999     4799999999999999999999


Q ss_pred             CCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          283 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       283 ~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      ++++.||.++.+. +++||++++|++++.+...
T Consensus        90 g~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~  122 (192)
T TIGR02287        90 GRNALVGMNAVVMDGAVIGENSIVAASAFVKAG  122 (192)
T ss_pred             CCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence            9999999998884 5777777777777666553

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.63  E-value=6.1e-15  Score=123.16  Aligned_cols=102  Identities=21%  Similarity=0.328  Sum_probs=77.2

Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEE-----eceEECCCCEECCCcEEeceEECC
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKV-----VNSVVMNHVTIGDGCSIQGSVICS  284 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I-----~~siI~~~v~Ig~~~~I~~~iI~~  284 (321)
                      ++++.+.+++.+.+++.||++|.|+++|.|.    .++||++|.|+++|.|     .+|+|++++.|++++.+.+++|++
T Consensus         4 ~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~   83 (155)
T cd04745           4 DPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGR   83 (155)
T ss_pred             CCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECC
Confidence            3444444444444555566666666666555    3789999999999999     578999999999999999999999


Q ss_pred             CCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813          285 NAQLQERVALK-DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       285 ~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~  315 (321)
                      ++.|+.++.|. +++|+++++|++++.+..++
T Consensus        84 ~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~  115 (155)
T cd04745          84 NALVGMNAVVMDGAVIGEESIVGAMAFVKAGT  115 (155)
T ss_pred             CCEECCCCEEeCCCEECCCCEECCCCEeCCCC
Confidence            99999999885 57888888888777776544

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.63  E-value=3e-15  Score=111.15  Aligned_cols=79  Identities=51%  Similarity=0.941  Sum_probs=68.3

Q ss_pred             ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCc
Q 020813          231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC  309 (321)
Q Consensus       231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~  309 (321)
                      |++++.|++++.|.+++||++|.|+++++|.+|+|++++.|++++.|.++++++++.|++++.+.+|+|++++.|++++
T Consensus         2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            5666777777777778889999999999999999999999999999999999999999999999999999999888875

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.61  E-value=1.1e-14  Score=125.94  Aligned_cols=105  Identities=18%  Similarity=0.304  Sum_probs=82.1

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceE
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSV  281 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~~~i  281 (321)
                      ..+++++.|++++.+.+++.||++|.|+.+|.|+.    .+||.+|.||++|.|.     +|+|+++++||+++.+.+++
T Consensus        11 p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~v   90 (196)
T PRK13627         11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCV   90 (196)
T ss_pred             CccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEE
Confidence            34556666666666656666666666666666653    4788888888888885     58999999999999999999


Q ss_pred             ECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813          282 ICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       282 I~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~  315 (321)
                      |++++.||.++++. +++||++++|++|+.+...+
T Consensus        91 IG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~  125 (196)
T PRK13627         91 IGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF  125 (196)
T ss_pred             ECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence            99999999999874 68888888888888776643

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.58  E-value=1.8e-14  Score=120.01  Aligned_cols=106  Identities=21%  Similarity=0.328  Sum_probs=85.8

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEeceEE
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGSVI  282 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~~~iI  282 (321)
                      .+.++|+|+|.|-.++.|+.++.|+++++|....  ..-.||+++.|.+||.|.     .+.|+++|+||+++.|.+|.|
T Consensus        15 ~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~I   92 (176)
T COG0663          15 DPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTI   92 (176)
T ss_pred             CCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEE
Confidence            3456667777666666677777777776665443  457999999999999997     568999999999999999999


Q ss_pred             CCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813          283 CSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       283 ~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~  315 (321)
                      ++++.||.|++|- +|.||++++|++|+.+.+..
T Consensus        93 g~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k  126 (176)
T COG0663          93 GDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK  126 (176)
T ss_pred             CCCcEEecCceEeCCcEECCCcEEccCCcccCCc
Confidence            9999999999775 58888888888888877654

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.58  E-value=4.2e-14  Score=119.14  Aligned_cols=101  Identities=18%  Similarity=0.396  Sum_probs=66.7

Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEece-----------EECCCCEECCCcEEe
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS-----------VVMNHVTIGDGCSIQ  278 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~s-----------iI~~~v~Ig~~~~I~  278 (321)
                      +|.+.|.+++.+.+++.||++|.|++++.|.    .++||++|.|+++|.|.++           .|++++.+..++.|.
T Consensus         3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~   82 (164)
T cd04646           3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE   82 (164)
T ss_pred             CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence            4444555555555555555555555555553    3578888888888888653           466777777777777


Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      +++||+++.||.++.|. ++.||++++|++++.+...
T Consensus        83 ~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~  119 (164)
T cd04646          83 ALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSS  119 (164)
T ss_pred             eeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence            78888888888877773 5666666666666666554

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.58  E-value=4.3e-14  Score=127.51  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=46.1

Q ss_pred             ceEECCCCEECCCcEEec--------eEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          245 RSVIGRHCRIGSNVKVVN--------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       245 ~svIg~~~~Ig~~~~I~~--------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      +++||++|.|+++|+|.+        ++|++++.|++++.|. +|+|++++.|++++.+. +|+||+++.|+.++.+.+.
T Consensus        77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~  156 (254)
T cd03351          77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF  156 (254)
T ss_pred             eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence            356677777777776652        5666777777766663 66666666666666554 4566666666665555554


Q ss_pred             eEee
Q 020813          315 SLAR  318 (321)
Q Consensus       315 ~~~~  318 (321)
                      +.++
T Consensus       157 v~Ig  160 (254)
T cd03351         157 CRIG  160 (254)
T ss_pred             cEEC
Confidence            4443

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.57  E-value=4.1e-14  Score=127.64  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             eEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          246 SVIGRHCRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       246 svIg~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++||++|.|++++.| .+|+|+++|.|+.++.+. +++|++++.|+.++.|. ++.||++++|++++.+..
T Consensus       103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~  173 (254)
T cd03351         103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQ  173 (254)
T ss_pred             eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEee
Confidence            566677777777766 466677777777777666 67777777777777664 566677766666666654

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PLN02296 carbonate dehydratase

Probab=99.57  E-value=4.5e-14  Score=127.44  Aligned_cols=103  Identities=20%  Similarity=0.300  Sum_probs=76.4

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEE
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSI  277 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~-----------~siI~~~v~Ig~~~~I  277 (321)
                      |++++.|.+++.+.+++.||++|.|..+|.|.    +.+||++|.|+++|.|.           +|+|+++|+||++|.|
T Consensus        55 I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI  134 (269)
T PLN02296         55 VDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL  134 (269)
T ss_pred             cCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence            34444444444444455555555555555555    35899999999999985           6899999999999999


Q ss_pred             eceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813          278 QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       278 ~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~  315 (321)
                      .+|+|++++.||.+++|. +++|+++++|++|+.+...+
T Consensus       135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~  173 (269)
T PLN02296        135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNT  173 (269)
T ss_pred             cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCC
Confidence            999999999999999874 67777777777777666553

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.56  E-value=1e-13  Score=128.95  Aligned_cols=77  Identities=22%  Similarity=0.380  Sum_probs=47.0

Q ss_pred             eeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-----------------
Q 020813          218 ELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-----------------  278 (321)
Q Consensus       218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-----------------  278 (321)
                      .|++++.|++++.||++|.|+.++.|+ +++||++|.|+++++|. +++|+++|.|+++|.|+                 
T Consensus       111 ~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i  190 (324)
T TIGR01853       111 TIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKI  190 (324)
T ss_pred             EECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceec
Confidence            333333334444444444444444453 36666666666666665 67777777777777773                 


Q ss_pred             ----ceEECCCCEECcCcEe
Q 020813          279 ----GSVICSNAQLQERVAL  294 (321)
Q Consensus       279 ----~~iI~~~~~Ig~~~~i  294 (321)
                          .++|++++.||++++|
T Consensus       191 ~~~G~vvIgd~v~IGa~~~I  210 (324)
T TIGR01853       191 PQIGRVIIEDDVEIGANTTI  210 (324)
T ss_pred             CccceEEECCCcEECCCCEE
Confidence                3677777777777766

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.56  E-value=7.5e-14  Score=125.92  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------------ceEECCCCEECCCcEEe--------ceEECCC
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVV--------NSVVMNH  268 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------------~svIg~~~~Ig~~~~I~--------~siI~~~  268 (321)
                      +..|++++.|++++.+.+++.||++|.|++++.|+             +++||++|.|++++.|.        +++|+++
T Consensus        28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~  107 (254)
T TIGR01852        28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN  107 (254)
T ss_pred             CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence            33344444444444444445555555555555554             46677777777777775        3466666


Q ss_pred             CEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeE
Q 020813          269 VTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESL  316 (321)
Q Consensus       269 v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~  316 (321)
                      +.|++++.|. +|+|++++.|++++.+. +|+||++++|+.++.+.+.+.
T Consensus       108 ~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~  157 (254)
T TIGR01852       108 NLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVR  157 (254)
T ss_pred             CEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcE
Confidence            6666666663 66666666666666554 455555555555555544433

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.56  E-value=5.5e-14  Score=127.74  Aligned_cols=112  Identities=21%  Similarity=0.417  Sum_probs=66.3

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCC------eEec-eEECCCCEECCCcEEe--------------------
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKC------SVKR-SVIGRHCRIGSNVKVV--------------------  261 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~------~I~~-svIg~~~~Ig~~~~I~--------------------  261 (321)
                      ++.+|.+++.|++++.|+++++||++|.||++|      +|.+ +.||.+|.|++|+.|+                    
T Consensus       122 ~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g  201 (338)
T COG1044         122 PNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG  201 (338)
T ss_pred             CCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceec
Confidence            344444444444444444444444444444444      4444 6677777777777664                    


Q ss_pred             ceEECCCCEECCCcEEe-c----eEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeEeeec
Q 020813          262 NSVVMNHVTIGDGCSIQ-G----SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESLARKE  320 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-~----~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~~~~~  320 (321)
                      +.+|+++|.||.|++|. +    ++|+++++|..-+.|. +|.||++|.|..++-|.+.+-++++
T Consensus       202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~  266 (338)
T COG1044         202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKY  266 (338)
T ss_pred             eEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCe
Confidence            24677777777777775 3    5666666666666664 6777777777776666666555543

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.56  E-value=8.4e-14  Score=120.39  Aligned_cols=92  Identities=21%  Similarity=0.372  Sum_probs=58.7

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQL  288 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~I  288 (321)
                      ...|++++.|++.+.|++++.||++|.|++++.|+++.||++|.|++++.|.+++|++++.|++++.|. +++|++++.|
T Consensus        15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~I   94 (193)
T cd03353          15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHI   94 (193)
T ss_pred             CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEE
Confidence            445555555666666666666666666666666666677777777777777777777777777766665 5666666666


Q ss_pred             CcCcEecCeEECC
Q 020813          289 QERVALKDCQVGQ  301 (321)
Q Consensus       289 g~~~~i~~~iIg~  301 (321)
                      ++++.+++++|++
T Consensus        95 g~~~~i~~s~ig~  107 (193)
T cd03353          95 GNFVEIKKSTIGE  107 (193)
T ss_pred             CCcEEEecceEcC
Confidence            6655554443333

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.55  E-value=5.7e-14  Score=103.56  Aligned_cols=76  Identities=39%  Similarity=0.691  Sum_probs=58.3

Q ss_pred             ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-eEECCCcEEc
Q 020813          231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYVVS  306 (321)
Q Consensus       231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-~iIg~~~~V~  306 (321)
                      |++++.|++++.|.+++||++|.|++++.|.+|+|+++++|++++.|.+++|++++.|++++.+.+ +++++++.|+
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~   78 (79)
T cd03356           2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE   78 (79)
T ss_pred             ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence            455666666666666778888888888888888888888888888888888888888888777765 7777776665

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02472 uncharacterized protein

Probab=99.54  E-value=1.2e-13  Score=123.13  Aligned_cols=102  Identities=15%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-----------ceEECCCCEECCCcEEe
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-----------NSVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-----------~siI~~~v~Ig~~~~I~  278 (321)
                      ..+|.|++.+..++.|++++.|+.+++|....  ...+||++|.|+++|.|.           +++|+++|+||++|.|.
T Consensus        65 ~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~--~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~  142 (246)
T PLN02472         65 DAYVAPNVVLAGQVTVWDGASVWNGAVLRGDL--NKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR  142 (246)
T ss_pred             CCEECCCCEEecCEEECCCCEEcCCCEEecCC--cceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC
Confidence            44455555555444455555554444442210  125889999999999884           58999999999999999


Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +|+|++++.||.+++|. +++|+++++|++++.+..
T Consensus       143 ~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~  178 (246)
T PLN02472        143 SCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP  178 (246)
T ss_pred             CeEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            99999999999998774 666666666666665554

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.54  E-value=8.6e-14  Score=126.50  Aligned_cols=106  Identities=23%  Similarity=0.493  Sum_probs=59.8

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-------ceEECCCCEECCCcEEe
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------NSVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-------~siI~~~v~Ig~~~~I~  278 (321)
                      +.+...|+|+|.+++++.++++++|++++.||+++.|.. ++||++|+||+++.|.       ++.|+++|.|++|+.|+
T Consensus       102 I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG  181 (338)
T COG1044         102 IHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIG  181 (338)
T ss_pred             cCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEc
Confidence            344566667666666666666666666666666665553 5555555555555543       24555555555555553


Q ss_pred             --------------------ceEECCCCEECcCcEec-C----eEECCCcEEcCCcEEc
Q 020813          279 --------------------GSVICSNAQLQERVALK-D----CQVGQGYVVSAGCEYK  312 (321)
Q Consensus       279 --------------------~~iI~~~~~Ig~~~~i~-~----~iIg~~~~V~~~~~i~  312 (321)
                                          +.+|+++|.||+++.|+ +    ++|++++.|...++|.
T Consensus       182 ~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIa  240 (338)
T COG1044         182 ADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIG  240 (338)
T ss_pred             cCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEc
Confidence                                15667777777777664 2    4444444444433333

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.54  E-value=1.1e-13  Score=115.32  Aligned_cols=101  Identities=25%  Similarity=0.354  Sum_probs=73.9

Q ss_pred             CCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEECCC
Q 020813          215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSN  285 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~-----siI~~~v~Ig~~~~I~~~iI~~~  285 (321)
                      +++.|++++.|.+++.||+++.|++++.|.    +++||++|.|++++.|..     ++|++++.|+.+|.|.+++|+++
T Consensus         4 ~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~   83 (153)
T cd04645           4 PSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN   83 (153)
T ss_pred             CCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence            344444444444445555555555555554    358999999999999987     58999999999999999999999


Q ss_pred             CEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813          286 AQLQERVALK-DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       286 ~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~  315 (321)
                      +.|+.++.+. +++|++++.|++++.+..++
T Consensus        84 ~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~  114 (153)
T cd04645          84 CLIGMGAIILDGAVIGKGSIVAAGSLVPPGK  114 (153)
T ss_pred             CEECCCCEEcCCCEECCCCEECCCCEECCCC
Confidence            9999888886 67777777777777666543

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.54  E-value=2.5e-13  Score=122.53  Aligned_cols=102  Identities=23%  Similarity=0.370  Sum_probs=58.2

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEe
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-------------~siI~~~v~Ig~~~~I~  278 (321)
                      |++++.|++++.+++++.|++++.|+++|.|.. ++||++|.|++++.|.             +++|++++.|+++|.|.
T Consensus        13 Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~   92 (254)
T TIGR01852        13 IGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTIN   92 (254)
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEEC
Confidence            333333444444444444444445555554443 6677777777777775             46677777777777775


Q ss_pred             --------ceEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcCC
Q 020813          279 --------GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       279 --------~~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~~  314 (321)
                              .++||+++.|++++.| ++|.||+++.|++++.+.+.
T Consensus        93 ~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~  137 (254)
T TIGR01852        93 RGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH  137 (254)
T ss_pred             CcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC
Confidence                    3466666666666666 35555555555555444443

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.54  E-value=1.6e-13  Score=114.49  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=73.0

Q ss_pred             CCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEec-----eEECCCCEECCCcEEeceEECCC
Q 020813          215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQGSVICSN  285 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~~-----siI~~~v~Ig~~~~I~~~iI~~~  285 (321)
                      +++.+.+++.|.+++.||++|.|++++.|..    .+||++|.|+++|.|..     ++|++++.|++++.+.+++|+++
T Consensus         5 ~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~   84 (154)
T cd04650           5 PKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY   84 (154)
T ss_pred             CCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC
Confidence            3344444444444455555555555555554    48999999999999875     78999999999999999999999


Q ss_pred             CEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          286 AQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       286 ~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +.|+.++.+. +++|+++++|++++.+..
T Consensus        85 ~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~  113 (154)
T cd04650          85 VIVGMGAILLNGAKIGDHVIIGAGAVVTP  113 (154)
T ss_pred             CEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence            9999998874 677788777777776664

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.53  E-value=2.9e-13  Score=127.22  Aligned_cols=32  Identities=34%  Similarity=0.562  Sum_probs=15.6

Q ss_pred             eEECCCCEECCCcEEec-eEECCCCEECCCcEE
Q 020813          246 SVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSI  277 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I  277 (321)
                      +.||++|.|+++++|.+ +.|+++|+|+++|.|
T Consensus       149 ~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I  181 (343)
T PRK00892        149 VKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI  181 (343)
T ss_pred             cEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence            34444444444444432 335555555555555

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.52  E-value=1.1e-13  Score=102.71  Aligned_cols=79  Identities=18%  Similarity=0.445  Sum_probs=73.0

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCc
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV  292 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~  292 (321)
                      |++++.|++++.+. ++.|+++|.|++++.|++|+|++++.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            56777888888885 69999999999999999999999999999999999999999999999999999999999999764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.52  E-value=2.8e-13  Score=114.55  Aligned_cols=86  Identities=15%  Similarity=0.276  Sum_probs=51.8

Q ss_pred             EECCCCEECCCCeEe-----ceEECCCCEECCCcEEec-eEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCc
Q 020813          230 MLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGY  303 (321)
Q Consensus       230 ~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~  303 (321)
                      .||++|.|++++.|.     ++.||++|.|+.++.|.. ++|+++|.||.+|.|.++.|++++.|++++.|.++.|++++
T Consensus        44 ~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~  123 (167)
T cd00710          44 IIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPGR  123 (167)
T ss_pred             EECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCCC
Confidence            344444444444442     244566666666666653 66666666666666666666666666666666666666666


Q ss_pred             EEcCCcEEcCCe
Q 020813          304 VVSAGCEYKGES  315 (321)
Q Consensus       304 ~V~~~~~i~~~~  315 (321)
                      +|++++.+...+
T Consensus       124 ~v~~~~~v~~~~  135 (167)
T cd00710         124 YVPAGAVITSQT  135 (167)
T ss_pred             EECCCCEEcCCC
Confidence            666666665443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.52  E-value=1.1e-13  Score=107.69  Aligned_cols=76  Identities=29%  Similarity=0.455  Sum_probs=45.9

Q ss_pred             eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec
Q 020813          218 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK  295 (321)
Q Consensus       218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~  295 (321)
                      .|++++.+ .+++||++|.|+ ++.|.+|+|+++|.|++++.|.+|+|++++.||+++.+.+|+|++++.|++++.+.
T Consensus         3 ~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~   78 (104)
T cd04651           3 YIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG   78 (104)
T ss_pred             eecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEEC
Confidence            44555555 345566666665 56666666666666666666666666666666666666666666666666555554

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.52  E-value=2e-13  Score=123.58  Aligned_cols=16  Identities=25%  Similarity=0.237  Sum_probs=8.1

Q ss_pred             eEECCCCEECCCcEEe
Q 020813          263 SVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~  278 (321)
                      ++|++++.|+++|+|.
T Consensus        81 v~IG~~~~I~e~~~I~   96 (262)
T PRK05289         81 LVIGDNNTIREFVTIN   96 (262)
T ss_pred             EEECCCCEECCCeEEe
Confidence            4455555555555553

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.50  E-value=3.5e-13  Score=117.40  Aligned_cols=100  Identities=14%  Similarity=0.312  Sum_probs=81.8

Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe---------------
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ---------------  278 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~---------------  278 (321)
                      .+.+.|++++.+ .++.||+++.|+++|.|.+++||++|.|++++.+.+++|+++|.|++++.|.               
T Consensus         6 ~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~   84 (204)
T TIGR03308         6 SPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFT   84 (204)
T ss_pred             CCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccc
Confidence            455566666666 3578888888888888888999999999999999999999999999998874               


Q ss_pred             -----------------------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          279 -----------------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       279 -----------------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                                             +++|++++.||.++.|. ++.||++++|++++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~  144 (204)
T TIGR03308        85 YRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD  144 (204)
T ss_pred             cccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence                                   56788888888888775 7888888888888886653

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.50  E-value=3.2e-13  Score=125.63  Aligned_cols=71  Identities=20%  Similarity=0.447  Sum_probs=35.2

Q ss_pred             EECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe---------------------ceEECCCCEECCCcEEe---
Q 020813          224 TVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV---------------------NSVVMNHVTIGDGCSIQ---  278 (321)
Q Consensus       224 ~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~---------------------~siI~~~v~Ig~~~~I~---  278 (321)
                      .|++++.||++|.|++++.|. +++||++|.|+++++|+                     +++|+++|.||+++.|.   
T Consensus       135 ~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~  214 (324)
T TIGR01853       135 VIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGA  214 (324)
T ss_pred             EECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEecCC
Confidence            333333344444444444444 35566666666666653                     25566666666666552   


Q ss_pred             --ceEECCCCEECcCcEe
Q 020813          279 --GSVICSNAQLQERVAL  294 (321)
Q Consensus       279 --~~iI~~~~~Ig~~~~i  294 (321)
                        +++|++++.|+..+.|
T Consensus       215 ~~~t~Ig~~~~I~n~v~I  232 (324)
T TIGR01853       215 FDDTIIGEGTKIDNLVQI  232 (324)
T ss_pred             cCcceecCCcEEccCcEE
Confidence              2344444444444433

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.50  E-value=6e-13  Score=112.48  Aligned_cols=101  Identities=22%  Similarity=0.349  Sum_probs=78.1

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEe-----ceEECCCCEECCCcEEe-----ceEECCCCEECCCcEEe-ceE
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-GSV  281 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~-~~i  281 (321)
                      |++++.|++++.+.+++.||++|.|++++.|.     ++.||++|.|++++.|.     ++.|++++.|+.++.|. .++
T Consensus         5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~   84 (167)
T cd00710           5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY   84 (167)
T ss_pred             eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence            34444444444444444455555555555443     47899999999999995     67899999999999998 599


Q ss_pred             ECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813          282 ICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       282 I~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~  313 (321)
                      |++++.||.++.|.++.||+++.|++++.+.+
T Consensus        85 Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~  116 (167)
T cd00710          85 IGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG  116 (167)
T ss_pred             ECCCCEECCCCEEECCEECCCCEEcCCCEEeC
Confidence            99999999999999999999999999888864

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.50  E-value=2.7e-13  Score=100.29  Aligned_cols=77  Identities=25%  Similarity=0.475  Sum_probs=42.5

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCCEEC
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQ  289 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~-~iI~~~~~Ig  289 (321)
                      ++|++.|++++.++++++|+++|.|+++|.|++|+|++++.|++++.|.+|++++++.|++++.+.. ++++++++|+
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~   79 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK   79 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence            3455555555555555555555555555555555555555555555555555555555555555543 4444444443

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.50  E-value=2.2e-13  Score=100.15  Aligned_cols=76  Identities=36%  Similarity=0.716  Sum_probs=59.4

Q ss_pred             ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEc
Q 020813          231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVS  306 (321)
Q Consensus       231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~  306 (321)
                      ||+++.|++++.|.+++|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|+.++.+. +++|++++.|+
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig   78 (79)
T cd05787           2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG   78 (79)
T ss_pred             ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence            56666677777777788999999999999999999999999999999999999999888665554 45555554443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.49  E-value=3.7e-13  Score=130.90  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=15.4

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      ++|+++++||.++.+. ++.||++++|++++.+.
T Consensus       381 ~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~  414 (446)
T PRK14353        381 TEIGAGAFIGSNSALVAPVTIGDGAYIASGSVIT  414 (446)
T ss_pred             cEECCCcEECCCCEEeCCCEECCCCEECCCCEEC
Confidence            4444555555444433 44444444444444443

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.48  E-value=4.8e-13  Score=121.11  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------------ceEECCCCEECCCcEEec--------eEECCCC
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------SVVMNHV  269 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------------~svIg~~~~Ig~~~~I~~--------siI~~~v  269 (321)
                      ..|..++.|++++.|.+++.||++|.|++++.|+             .++||++|.|+++++|.+        +.|++++
T Consensus        33 v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~  112 (262)
T PRK05289         33 VVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNN  112 (262)
T ss_pred             CEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCce
Confidence            3333333333444444444455555555555554             266777777777777753        3566666


Q ss_pred             EECCCcEEe-ceEECCCCEECcCcEe
Q 020813          270 TIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       270 ~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      .|+.++.|. +|+|++++.++.++.+
T Consensus       113 ~I~~~~~I~h~~~IG~~v~i~~~~~i  138 (262)
T PRK05289        113 LLMAYVHVAHDCVVGNHVILANNATL  138 (262)
T ss_pred             EECCCCEECCeEEECCCeEECCcccc
Confidence            666666665 5566555555555443

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.47  E-value=6.2e-13  Score=125.02  Aligned_cols=16  Identities=6%  Similarity=-0.103  Sum_probs=11.7

Q ss_pred             CCccceEEeEeHHHHH
Q 020813           71 DLMDAHMYAFNRSVLQ   86 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~   86 (321)
                      +...+++|+++++...
T Consensus        51 ~~~~A~a~Iv~~d~~~   66 (343)
T PRK00892         51 ATTKAGAVIVSPDDAE   66 (343)
T ss_pred             hccCCeEEEechhhhh
Confidence            3568888999888643

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.47  E-value=5.5e-13  Score=98.25  Aligned_cols=77  Identities=19%  Similarity=0.478  Sum_probs=70.0

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec-eEECCCCEECc
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG-SVICSNAQLQE  290 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~-~iI~~~~~Ig~  290 (321)
                      |++++.|++++.+.+ +.|+++|.|++++.|.+++|+++|.|++++.|.+|+|++++.|++++.+.+ +++++++.|++
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~   79 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED   79 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence            567788888888876 999999999999999999999999999999999999999999999999986 99988888763

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.46  E-value=1.5e-12  Score=117.08  Aligned_cols=14  Identities=29%  Similarity=0.368  Sum_probs=7.0

Q ss_pred             EECCCCEECCCcEE
Q 020813          247 VIGRHCRIGSNVKV  260 (321)
Q Consensus       247 vIg~~~~Ig~~~~I  260 (321)
                      .||++|.|+++++|
T Consensus        79 ~IG~~~~I~e~vtI   92 (255)
T PRK12461         79 EIGDRNVIREGVTI   92 (255)
T ss_pred             EECCceEECCccEE
Confidence            44555555555544

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.45  E-value=4.1e-12  Score=109.79  Aligned_cols=127  Identities=19%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             ccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEE
Q 020813          175 SKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI  254 (321)
Q Consensus       175 ~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~I  254 (321)
                      ..++..++..+...++...+.....        .....+++.+.+++++.+++++.|+++++|+++     ++||++|.|
T Consensus        60 ~~~iiai~~~~~~~~i~~~l~~~g~--------~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~-----~~ig~~~~i  126 (201)
T TIGR03570        60 VDLVVAIGDNKLRRRLFEKLKAKGY--------RFATLIHPSAIVSPSASIGEGTVIMAGAVINPD-----VRIGDNVII  126 (201)
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCC--------cceEEecCCeEECCCCEECCCCEECCCCEECCC-----CEECCCcEE
Confidence            4456666655554444443322211        112344555555555555555555555555544     366666777


Q ss_pred             CCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          255 GSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       255 g~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      ++++.|. ++.|++++.|+.++.|. +++|++++.|++++++. ++.|+++++|++++.+.++
T Consensus       127 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~  189 (201)
T TIGR03570       127 NTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD  189 (201)
T ss_pred             CCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc
Confidence            6666665 56777788888888877 78888888888887774 6788888888888877653

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.44  E-value=1.8e-12  Score=112.14  Aligned_cols=57  Identities=23%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             EECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCC
Q 020813          230 MLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNA  286 (321)
Q Consensus       230 ~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~  286 (321)
                      .|+++|.|++++.|.+++|++++.|++++.|. +++|++++.|++++.+.+++|++++
T Consensus        52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~  109 (193)
T cd03353          52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGS  109 (193)
T ss_pred             EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCC
Confidence            45555555555555566666666666666665 4555555555555554444443333

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.44  E-value=1.5e-12  Score=96.34  Aligned_cols=76  Identities=21%  Similarity=0.454  Sum_probs=63.1

Q ss_pred             CCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-eEECCCcE
Q 020813          226 GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-CQVGQGYV  304 (321)
Q Consensus       226 ~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-~iIg~~~~  304 (321)
                      ++++.|++++.|+++     ++||++|.|+++++|.+|+++++++|++++.|.++++++++.|++++.+.+ ++||+++.
T Consensus         3 ~~~~~I~~~~~i~~~-----~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~   77 (80)
T cd05824           3 DPSAKIGKTAKIGPN-----VVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVT   77 (80)
T ss_pred             CCCCEECCCCEECCC-----CEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceE
Confidence            344455555555444     589999999999999999999999999999999999999999999988875 77777777


Q ss_pred             Ec
Q 020813          305 VS  306 (321)
Q Consensus       305 V~  306 (321)
                      |+
T Consensus        78 i~   79 (80)
T cd05824          78 IK   79 (80)
T ss_pred             EC
Confidence            65

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.44  E-value=8.6e-13  Score=102.69  Aligned_cols=80  Identities=25%  Similarity=0.465  Sum_probs=75.7

Q ss_pred             CEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          235 SQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       235 ~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      +.|++++.|.+|+||++|.|+ ++.|.+|+||+++.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+.++
T Consensus         2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~   80 (104)
T cd04651           2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD   80 (104)
T ss_pred             ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence            567778888889999999999 9999999999999999999999999999999999999999999999999999999987


Q ss_pred             e
Q 020813          315 S  315 (321)
Q Consensus       315 ~  315 (321)
                      .
T Consensus        81 ~   81 (104)
T cd04651          81 P   81 (104)
T ss_pred             c
Confidence            5

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.43  E-value=4.2e-12  Score=104.01  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=14.3

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      ++|++++.|++++.|. ++.||++++|++++.+.
T Consensus        76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~  109 (139)
T cd03350          76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLT  109 (139)
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEEcCCCEEc
Confidence            3444444444444442 44444444444444444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.43  E-value=5.1e-12  Score=105.45  Aligned_cols=96  Identities=15%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             CeeeCCCCeeCCCcEECC---CCEECCCCEECCCCeE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ce
Q 020813          210 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS  280 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~---~~~Ig~~~~I~~~~~I-----~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~  280 (321)
                      +..|.+++.|++++.|.+   ++.||++|.|+++|.|     .+++||++|.|++++.+.+++|++++.||.++.|. ++
T Consensus        18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~   97 (155)
T cd04745          18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGA   97 (155)
T ss_pred             cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCC
Confidence            344555555555555543   3667888888888888     56899999999999999999999999999999987 58


Q ss_pred             EECCCCEECcCcEec-CeEECCCcEE
Q 020813          281 VICSNAQLQERVALK-DCQVGQGYVV  305 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~-~~iIg~~~~V  305 (321)
                      +|++++.|++++.+. +..|++++++
T Consensus        98 ~Ig~~~~Ig~~s~v~~~~~i~~~~~v  123 (155)
T cd04745          98 VIGEESIVGAMAFVKAGTVIPPRSLI  123 (155)
T ss_pred             EECCCCEECCCCEeCCCCEeCCCCEE
Confidence            888888888666554 3444544443

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.43  E-value=4.5e-12  Score=106.80  Aligned_cols=100  Identities=12%  Similarity=0.186  Sum_probs=66.6

Q ss_pred             CeeeCCCCeeCCCcEEC---CCCEECCCCEECCCCeEec-----------eEECCCCEECCCcEEeceEECCCCEECCCc
Q 020813          210 NNIIHPSAELGSKTTVG---PHCMLGEGSQMGDKCSVKR-----------SVIGRHCRIGSNVKVVNSVVMNHVTIGDGC  275 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~---~~~~Ig~~~~I~~~~~I~~-----------svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~  275 (321)
                      +..|++.+.|++++.+.   +++.||++|.|+++|.|.+           +.||+++.|+.++.|.+++|+++|.||.+|
T Consensus        17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a   96 (164)
T cd04646          17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKS   96 (164)
T ss_pred             ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCC
Confidence            34455555555555552   3456677777777777754           357888888888888888888888888888


Q ss_pred             EEe-ceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          276 SIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       276 ~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      .|. +++|++++.||++++|     .+++.|++++.+.+.
T Consensus        97 ~I~~gv~Ig~~~~IgagsvV-----~~~~~i~~~~vi~g~  131 (164)
T cd04646          97 FVGKNVIITDGCIIGAGCKL-----PSSEILPENTVIYGA  131 (164)
T ss_pred             EECCCCEECCCCEEeCCeEE-----CCCcEECCCeEEeCC
Confidence            885 6777777777755544     444555555554443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.43  E-value=2.7e-12  Score=115.52  Aligned_cols=50  Identities=14%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      |.|+++|.|+.++.+. +++|++++.|+.++.+. ++.||++++|++++.+.
T Consensus       120 ~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~  171 (255)
T PRK12461        120 CQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRIS  171 (255)
T ss_pred             CEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceEe
Confidence            3344444444444433 44555555555554443 45555555555555443

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.43  E-value=7.3e-12  Score=107.28  Aligned_cols=99  Identities=22%  Similarity=0.439  Sum_probs=63.3

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL  288 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~I  288 (321)
                      ..+++.+.+..++.++.++.|+++++|++++     .||++|.|++++.|. ++.|++++.|+.++.+. +++|++++.|
T Consensus        85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~-----~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i  159 (197)
T cd03360          85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDA-----RIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFI  159 (197)
T ss_pred             eEECCCeEECCCCEECCCCEEcCCCEECCCC-----EECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEE
Confidence            3455555555555555555555555555544     455555555555553 45677777777777775 5777777777


Q ss_pred             CcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          289 QERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       289 g~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      +.++.+. ++.||++++|++++.+.+.
T Consensus       160 g~~~~v~~~~~ig~~~~v~~~~~v~~~  186 (197)
T cd03360         160 GAGATIIQGVTIGAGAIIGAGAVVTKD  186 (197)
T ss_pred             CCCCEEcCCCEECCCCEECCCCEEcCC
Confidence            7777765 5777777777777776553

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.42  E-value=2.1e-12  Score=102.65  Aligned_cols=99  Identities=16%  Similarity=0.262  Sum_probs=74.1

Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCc
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV  292 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~  292 (321)
                      ++++.|++++.+++++.|+++|.|+.++.|. +++||++|.|++++.+.++.+ .+..+..++.+++++|++++.|++++
T Consensus         2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~   80 (119)
T cd03358           2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANA   80 (119)
T ss_pred             CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCC
Confidence            3455666666666677777777777777774 489999999999998887644 34444567778888888888888888


Q ss_pred             Eec-CeEECCCcEEcCCcEEcC
Q 020813          293 ALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       293 ~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      .+. ++.|++++.|++++.+..
T Consensus        81 ~v~~~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          81 TILPGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             EEeCCcEECCCCEEccCCEEeC
Confidence            775 588888888888877765

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.42  E-value=6e-13  Score=129.56  Aligned_cols=21  Identities=38%  Similarity=0.635  Sum_probs=17.6

Q ss_pred             CCCccceEEeEeHHHHHHHHh
Q 020813           70 ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~   90 (321)
                      ++++++|+|+|++++|.++++
T Consensus       166 ~~~~~~Giy~f~~~~l~~~~~  186 (450)
T PRK14360        166 NNRINAGIYCFNWPALAEVLP  186 (450)
T ss_pred             CcEEEEEEEEEEHHHHHHHHh
Confidence            568899999999988877764

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=4.1e-13  Score=129.57  Aligned_cols=89  Identities=22%  Similarity=0.311  Sum_probs=75.0

Q ss_pred             CEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcC
Q 020813          229 CMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA  307 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~  307 (321)
                      .+-++.+++...|.++. .+||.++.||.|+.|.||+||.||.||.||+|.+|.|++||+||+||+|++|+|++++.|++
T Consensus       316 IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~  395 (673)
T KOG1461|consen  316 IYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGE  395 (673)
T ss_pred             cccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCC
Confidence            33344444444444443 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEcCCeEe
Q 020813          308 GCEYKGESLA  317 (321)
Q Consensus       308 ~~~i~~~~~~  317 (321)
                      |+.++.+.++
T Consensus       396 ~~~l~~g~vl  405 (673)
T KOG1461|consen  396 GAILKPGSVL  405 (673)
T ss_pred             CcccCCCcEE
Confidence            8888765544

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.42  E-value=2.7e-12  Score=110.61  Aligned_cols=79  Identities=20%  Similarity=0.341  Sum_probs=60.1

Q ss_pred             CEECCCCEECCCCeE-----eceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCC
Q 020813          229 CMLGEGSQMGDKCSV-----KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQG  302 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I-----~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~  302 (321)
                      ++||++|.|+++|.|     .+|+||++|.|++++.|.+|+|++++.||.++.|. +++|++++.|++++     +|.++
T Consensus        48 i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags-----~V~~~  122 (192)
T TIGR02287        48 IVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASA-----FVKAG  122 (192)
T ss_pred             eEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCC-----EECCC
Confidence            455678888888888     35899999999999999999999999999998886 67777777777554     44444


Q ss_pred             cEEcCCcEEc
Q 020813          303 YVVSAGCEYK  312 (321)
Q Consensus       303 ~~V~~~~~i~  312 (321)
                      +.|++++.+.
T Consensus       123 ~~ip~~~l~~  132 (192)
T TIGR02287       123 AEMPAQYLVV  132 (192)
T ss_pred             CEECCCeEEE
Confidence            4555544433

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.40  E-value=1.8e-12  Score=126.12  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=25.5

Q ss_pred             CEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEec
Q 020813          229 CMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG  279 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~  279 (321)
                      +.|+++|.|+++|.|.+++||++|.||+++.|. +++|+++|.||+++.+.+
T Consensus       297 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~  348 (451)
T TIGR01173       297 SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKN  348 (451)
T ss_pred             eEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecC
Confidence            344445555555555555555555555555554 345555555544444433

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.39  E-value=8e-12  Score=102.37  Aligned_cols=93  Identities=20%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEec---------eEECCCCEECCCcEEe-
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-  278 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~-  278 (321)
                      ++.|.+++.|.+.+.+..++.|++++.|+.++.|.+ ++||++|.|++++.|.+         ++|++++.|++++.|. 
T Consensus        13 ~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~   92 (139)
T cd03350          13 GAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVE   92 (139)
T ss_pred             CCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECC
Confidence            334444444444444444444455555555554433 56666666666666642         4566666666666664 


Q ss_pred             ceEECCCCEECcCcEec-CeEECCC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQG  302 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~  302 (321)
                      ++.|++++.|++++.|. +..|+++
T Consensus        93 gv~Ig~~~~Ig~g~~V~~~~~I~~~  117 (139)
T cd03350          93 GVIVGKGAVLAAGVVLTQSTPIYDR  117 (139)
T ss_pred             CCEECCCCEEcCCCEEcCCeEeccc
Confidence            56666666666555553 3444444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.39  E-value=5.3e-12  Score=112.73  Aligned_cols=32  Identities=16%  Similarity=0.334  Sum_probs=16.0

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++|+++|.||.+|.|. +++|++++.||+|++|
T Consensus       174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI  206 (269)
T TIGR00965       174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI  206 (269)
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence            4455555555555553 4445555555544444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.39  E-value=1.4e-11  Score=107.45  Aligned_cols=10  Identities=20%  Similarity=0.152  Sum_probs=3.8

Q ss_pred             eEECCCCEEC
Q 020813          280 SVICSNAQLQ  289 (321)
Q Consensus       280 ~iI~~~~~Ig  289 (321)
                      +.|++++.|+
T Consensus       133 ~~ig~~~~i~  142 (205)
T cd03352         133 VRIGENCLIA  142 (205)
T ss_pred             CEECCCCEEC
Confidence            3333333333

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.38  E-value=7.7e-12  Score=111.70  Aligned_cols=71  Identities=24%  Similarity=0.366  Sum_probs=36.7

Q ss_pred             CCCCEECCCCeEec-eEECCCCEECCCcEEec-eEEC--------CCCEECCCcEEe-ceEECCCCEECcCcEec-CeEE
Q 020813          232 GEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN-SVVM--------NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQV  299 (321)
Q Consensus       232 g~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~-siI~--------~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iI  299 (321)
                      ..++.||++|.|.. ++||++|.||++|.|.. +.|+        .+|.||++|.|+ +|+|.+++.||++++|. +++|
T Consensus       127 niga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI  206 (269)
T TIGR00965       127 NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI  206 (269)
T ss_pred             cCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence            34455555555554 55566666666555542 2332        345666666665 55566666655444443 3444


Q ss_pred             CCC
Q 020813          300 GQG  302 (321)
Q Consensus       300 g~~  302 (321)
                      +++
T Consensus       207 ~~~  209 (269)
T TIGR00965       207 GQS  209 (269)
T ss_pred             CCC
Confidence            333

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.38  E-value=1.3e-11  Score=102.93  Aligned_cols=94  Identities=18%  Similarity=0.227  Sum_probs=70.9

Q ss_pred             eeeCCCCeeCCCcEECCC---CEECCCCEECCCCeEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceE
Q 020813          211 NIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSV  281 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~~-----svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~i  281 (321)
                      ..+++++.|++++.|.+.   +.||++|.|+++|.|..     ++||+++.|++++.+.+++|++++.|+.++.+. +++
T Consensus        19 v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~   98 (154)
T cd04650          19 VVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAK   98 (154)
T ss_pred             EEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCE
Confidence            344444444444444333   47888888888888874     799999999999999999999999999999986 788


Q ss_pred             ECCCCEECcCcEec-CeEECCCcE
Q 020813          282 ICSNAQLQERVALK-DCQVGQGYV  304 (321)
Q Consensus       282 I~~~~~Ig~~~~i~-~~iIg~~~~  304 (321)
                      |++++.+++++.+. +..++++++
T Consensus        99 Ig~~~~vg~~~~v~~g~~i~~~~v  122 (154)
T cd04650          99 IGDHVIIGAGAVVTPGKEIPDYSL  122 (154)
T ss_pred             ECCCCEECCCCEECCCcEeCCCCE
Confidence            88888888776654 355555555

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PLN02296 carbonate dehydratase

Probab=99.38  E-value=1e-11  Score=112.18  Aligned_cols=92  Identities=17%  Similarity=0.337  Sum_probs=62.2

Q ss_pred             eCCCCeeCCCcEECCC---CEECCCCEECCCCeEe-----------ceEECCCCEECCCcEEeceEECCCCEECCCcEEe
Q 020813          213 IHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~-----------~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~  278 (321)
                      |++++.|..++.|.++   +.||++|.|+++|.|.           +++||++|.||.+|.|.+|+|+++|.||.++.|.
T Consensus        73 IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~  152 (269)
T PLN02296         73 VGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLL  152 (269)
T ss_pred             ECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEEC
Confidence            3344444444444332   2677788888888774           5789999999999998888888888888888775


Q ss_pred             -ceEECCCCEECcCcEec-CeEECCCcE
Q 020813          279 -GSVICSNAQLQERVALK-DCQVGQGYV  304 (321)
Q Consensus       279 -~~iI~~~~~Ig~~~~i~-~~iIg~~~~  304 (321)
                       +++|++++.|++++.|. +..|.++++
T Consensus       153 ~gv~Ig~~a~IgagSvV~~~~~I~~~~~  180 (269)
T PLN02296        153 DGVVVEKHAMVAAGALVRQNTRIPSGEV  180 (269)
T ss_pred             CCeEECCCCEECCCCEEecCCEeCCCeE
Confidence             67777777777655543 333444443

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.37  E-value=9.2e-12  Score=101.09  Aligned_cols=96  Identities=22%  Similarity=0.392  Sum_probs=64.0

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----c-eEECCCCEECCCcEEeceEECCC----CEECCCcEEe-
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----R-SVIGRHCRIGSNVKVVNSVVMNH----VTIGDGCSIQ-  278 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~-svIg~~~~Ig~~~~I~~siI~~~----v~Ig~~~~I~-  278 (321)
                      +...+.+++.|++++.|.++++|..++.|+++|.|.    . ++||++|.||+++.|. +.+..+    +.||++|+|+ 
T Consensus         6 ~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG~   84 (147)
T cd04649           6 DADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLGA   84 (147)
T ss_pred             CCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEECC
Confidence            345667778888888888888888888888888776    4 7888888888888887 445455    5555555555 


Q ss_pred             ceEECCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813          279 GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~  312 (321)
                      ++.|  ++.||     ++|+||++++|.+++.+.
T Consensus        85 ga~I--gv~IG-----~~~vIGaGsvV~k~t~i~  111 (147)
T cd04649          85 NSGI--GISLG-----DNCIVEAGLYVTAGTKVT  111 (147)
T ss_pred             CCEE--eEEEC-----CCCEECCCCEEeCCeEEE
Confidence            4444  34444     345555555555555543

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.37  E-value=5.2e-12  Score=92.80  Aligned_cols=76  Identities=25%  Similarity=0.483  Sum_probs=63.9

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEEC
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig  289 (321)
                      |.+++.|++++.+. ++.|+++|.|++++.|.+++|++++.|+++++|.+++|++++.|++++.|. ++++++++.||
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig   78 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIG   78 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence            46677778888775 688888888888888888999999999999999999999999999988887 67777777766

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.37  E-value=1.3e-11  Score=103.76  Aligned_cols=47  Identities=26%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      ++||+++.|++++.+.+++|++++.||+++.|+ +++|++++.|++++
T Consensus        73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~  120 (161)
T cd03359          73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGT  120 (161)
T ss_pred             eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCC
Confidence            467777777777777777777777777777665 56666666666443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02472 uncharacterized protein

Probab=99.37  E-value=1.2e-11  Score=110.44  Aligned_cols=96  Identities=16%  Similarity=0.277  Sum_probs=61.7

Q ss_pred             eeeCCCCeeCCCcEECCC---CEECCCCEECCCCeEe-----------ceEECCCCEECCCcEEeceEECCCCEECCCcE
Q 020813          211 NIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS  276 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~-----------~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~  276 (321)
                      ..|.+.+.|..++.+..+   ..||+++.|+++|.|.           +++||++|.||++|.|.+|+|+++|.||.+|.
T Consensus        78 V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~sv  157 (246)
T PLN02472         78 VTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSI  157 (246)
T ss_pred             EEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCE
Confidence            334444444444433222   4567777777777773           48999999999999999888888888888877


Q ss_pred             Ee-ceEECCCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813          277 IQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       277 I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i  311 (321)
                      |. +++|++++.|++     +++|.++..|+++...
T Consensus       158 I~~gavIg~~~~Ig~-----gsvV~~g~~Ip~g~~~  188 (246)
T PLN02472        158 LMEGSLVETHSILEA-----GSVLPPGRRIPTGELW  188 (246)
T ss_pred             ECCCCEECCCCEECC-----CCEECCCCEeCCCCEE
Confidence            65 566666555553     3444444444444443

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.36  E-value=3.8e-12  Score=124.21  Aligned_cols=63  Identities=14%  Similarity=0.415  Sum_probs=28.2

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCc
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGC  275 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~  275 (321)
                      .|++++.|++++.| .++.|+++|.|++++.|.+|+||++|.|++++.|. +++|++++.||+++
T Consensus       285 ~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~  348 (456)
T PRK09451        285 TLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFV  348 (456)
T ss_pred             EECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccce
Confidence            33444444444444 23444444444444444444445555555444443 34444444444433

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.36  E-value=6.1e-12  Score=113.24  Aligned_cols=73  Identities=16%  Similarity=0.299  Sum_probs=38.9

Q ss_pred             CEECCCCEECCCCeEec-eEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-C
Q 020813          229 CMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-D  296 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~  296 (321)
                      +.|+++|.|+.++.|++ ++||++|.|+.++.|.         +++|+++|.||.+|.|. +++|++++.|++++.|. +
T Consensus       133 a~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g  212 (272)
T PRK11830        133 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS  212 (272)
T ss_pred             CEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence            33444444444444443 3555555555555443         25566666666666663 66666666666666553 4


Q ss_pred             eEECC
Q 020813          297 CQVGQ  301 (321)
Q Consensus       297 ~iIg~  301 (321)
                      +.|++
T Consensus       213 t~I~~  217 (272)
T PRK11830        213 TKIYD  217 (272)
T ss_pred             eEECc
Confidence            44444

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.36  E-value=8.2e-12  Score=107.93  Aligned_cols=112  Identities=24%  Similarity=0.452  Sum_probs=83.1

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------ceEECCCCEECCCcEEe-------------ceEEC
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------RSVIGRHCRIGSNVKVV-------------NSVVM  266 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------~svIg~~~~Ig~~~~I~-------------~siI~  266 (321)
                      +.+.+.|+|+|.|++++.||+-|+||+++.|++++.|+       .+.||++++|-+.+.|+             ..+|+
T Consensus         6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG   85 (260)
T COG1043           6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG   85 (260)
T ss_pred             cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence            34566778888888888888888888887777777665       25566666666666664             24788


Q ss_pred             CCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCeEee
Q 020813          267 NHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGESLAR  318 (321)
Q Consensus       267 ~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~~~~  318 (321)
                      ++++|.++++|.        -+.||+++.+-+++.+. +|+||+++++..++.+.+.+-++
T Consensus        86 ~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~ig  146 (260)
T COG1043          86 DNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVG  146 (260)
T ss_pred             CCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEEC
Confidence            888888888884        26788888888888774 88888888888888888876554

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.35  E-value=1.3e-11  Score=95.43  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEE
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQL  288 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~I  288 (321)
                      ..++++.+.|++++.+.++++|++++.|++++.|.. ++||++|.||.  .|.+|+|++++.+++++.|++++|++++.|
T Consensus        11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~i   88 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNL   88 (101)
T ss_pred             CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEE
Confidence            456667777777777777777888888877777775 77888888865  567888888888888888888888888888


Q ss_pred             CcCcEec
Q 020813          289 QERVALK  295 (321)
Q Consensus       289 g~~~~i~  295 (321)
                      |+++...
T Consensus        89 g~~~~~~   95 (101)
T cd05635          89 GAGTNNS   95 (101)
T ss_pred             CCCceec
Confidence            8777654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.34  E-value=1.9e-11  Score=110.02  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             EECCCCEECCCcEEec-eEECCCCEECCCcEEec---------eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcCCe
Q 020813          247 VIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~~~  315 (321)
                      .||++|.|+.++.|++ ++|+++|+|+.++.|.+         ++|+++|.||.++.| .+++||++++|++++.+...+
T Consensus       134 ~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt  213 (272)
T PRK11830        134 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQST  213 (272)
T ss_pred             EECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence            4555555555555553 35666666666666543         677888888877776 467777777777776666544


Q ss_pred             Ee
Q 020813          316 LA  317 (321)
Q Consensus       316 ~~  317 (321)
                      .+
T Consensus       214 ~I  215 (272)
T PRK11830        214 KI  215 (272)
T ss_pred             EE
Confidence            33

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.33  E-value=6.7e-12  Score=122.43  Aligned_cols=66  Identities=21%  Similarity=0.209  Sum_probs=38.7

Q ss_pred             eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813          246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  311 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i  311 (321)
                      ++||++|.|+++|.|.+|+|+++|.|+++|.|.+++|++++.||+++.|. +++||+++.|+.++.+
T Consensus       288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i  354 (456)
T PRK14356        288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM  354 (456)
T ss_pred             eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence            45666666666666666666666666666666666666666666665554 5555555555555444

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.33  E-value=7.7e-12  Score=122.83  Aligned_cols=72  Identities=17%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec--------CeEECCCcEEcCCcEEcCCeEe
Q 020813          246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESLA  317 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~--------~~iIg~~~~V~~~~~i~~~~~~  317 (321)
                      ++||++|.|++++.|.+++|++++.+|+.+.+++++|++++.||+++++.        .+.||+++.|+.++.+.+...+
T Consensus       341 ~~Ig~~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~I  420 (481)
T PRK14358        341 TVLGEGVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVV  420 (481)
T ss_pred             cEECCCCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEE
Confidence            44444444444444444445555555555556678888999999888774        3567777666666655554443

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.33  E-value=2.8e-11  Score=101.70  Aligned_cols=68  Identities=18%  Similarity=0.323  Sum_probs=46.8

Q ss_pred             eEECCCCEECCCcEEec-------------eEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813          246 SVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  311 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~-------------siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i  311 (321)
                      +.||++|.|++++.|..             ++|++++.|++++.+.+++|++++.|++++.|. +|+|++++.|++++.+
T Consensus        43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V  122 (161)
T cd03359          43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV  122 (161)
T ss_pred             eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence            46777777777776653             468888999999888888888888877777764 4555555555554444


Q ss_pred             cC
Q 020813          312 KG  313 (321)
Q Consensus       312 ~~  313 (321)
                      ..
T Consensus       123 ~~  124 (161)
T cd03359         123 PP  124 (161)
T ss_pred             CC
Confidence            43

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.33  E-value=1.3e-11  Score=120.65  Aligned_cols=86  Identities=15%  Similarity=0.290  Sum_probs=69.6

Q ss_pred             ECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCC
Q 020813          225 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQG  302 (321)
Q Consensus       225 i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~  302 (321)
                      +++++.|++++.|+++|.|.. ++||++|.|+++|+|.+|+|+++|+|+++|.|.+++|++++.||+++.+. ++.|+++
T Consensus       265 i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~  344 (459)
T PRK14355        265 IDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH  344 (459)
T ss_pred             ECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC
Confidence            444444555555555555543 69999999999999999999999999999999999999999999999886 7788888


Q ss_pred             cEEcCCcE
Q 020813          303 YVVSAGCE  310 (321)
Q Consensus       303 ~~V~~~~~  310 (321)
                      ++|+.++.
T Consensus       345 ~~ig~~~~  352 (459)
T PRK14355        345 VKIGNFVE  352 (459)
T ss_pred             CEECCCcc
Confidence            87776654

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.33  E-value=9.3e-12  Score=121.18  Aligned_cols=126  Identities=15%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             eeEEEEecCccc--eeeccCHHHHHHHchhhcc--------cccc-CCCc-ccccCCeeeCCCCeeCCCcEECCCCEECC
Q 020813          166 KCCVYIASNSKY--CVRLNSIQAFMDINRDVIG--------EANH-LSGY-NFSAQNNIIHPSAELGSKTTVGPHCMLGE  233 (321)
Q Consensus       166 ~v~~~i~~~~~~--w~~i~t~~~y~~~~~~~l~--------~~~~-~~~~-~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~  233 (321)
                      ++.+|  ...+|  |..+++++++..+...+..        .... +.+. .++..++.|++++.|++++.|++++.||+
T Consensus       201 ~v~~~--~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~  278 (448)
T PRK14357        201 KVRVV--KTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGE  278 (448)
T ss_pred             heeEE--ecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECC
Confidence            34555  34567  5566798777665433211        0001 1110 12222333334444444444444555566


Q ss_pred             CCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          234 GSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       234 ~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      +|.|+++|.|.+|+||++|.|. .+.+.+|+|++++.||+++.|. +++|+++++|++++.+
T Consensus       279 ~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i  339 (448)
T PRK14357        279 DCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI  339 (448)
T ss_pred             CcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee
Confidence            6666666666666666666663 3455566666666666666664 4666666666655544

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.32  E-value=1.3e-11  Score=119.57  Aligned_cols=60  Identities=15%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             EECCCcEEeceEECCCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          253 RIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       253 ~Ig~~~~I~~siI~~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      +||+++.|.+|+|+++|.||.++.+.        .++||+++.||.++.|. ++.||++++|++|+.+.
T Consensus       333 ~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~  401 (430)
T PRK14359        333 KAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT  401 (430)
T ss_pred             cccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence            44444444555555555555555443        24555555555555443 45555555555555443

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.31  E-value=4.7e-11  Score=99.38  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=74.2

Q ss_pred             CeeeCCCCeeCCCcEECC---CCEECCCCEECCCCeEec-----eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ce
Q 020813          210 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS  280 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~---~~~Ig~~~~I~~~~~I~~-----svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~  280 (321)
                      +..+.+++.|++++.|..   .++||+++.|+++|.|..     ++||++|.|+.++.+.+++|++++.|++++.+. ++
T Consensus        17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~   96 (153)
T cd04645          17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGA   96 (153)
T ss_pred             eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCC
Confidence            344556666666665543   357888888888888876     599999999999999999999999999999997 88


Q ss_pred             EECCCCEECcCcEec-CeEECCCcEE
Q 020813          281 VICSNAQLQERVALK-DCQVGQGYVV  305 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~-~~iIg~~~~V  305 (321)
                      +|++++.|++++.+. +..+++++++
T Consensus        97 ~ig~~~~ig~~~~v~~~~~i~~~~~~  122 (153)
T cd04645          97 VIGKGSIVAAGSLVPPGKVIPPGSLV  122 (153)
T ss_pred             EECCCCEECCCCEECCCCEeCCCCEE
Confidence            889988888766654 3345555444

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.31  E-value=3.3e-11  Score=104.16  Aligned_cols=66  Identities=20%  Similarity=0.400  Sum_probs=48.9

Q ss_pred             EECCCCEECCCCeEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          230 MLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       230 ~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      .|+++|.|+++|.|.     +++||+++.||.++.+.+++|+++|.||.++.|. +++|++++.|++++.+.
T Consensus        51 ~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~  122 (196)
T PRK13627         51 IVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK  122 (196)
T ss_pred             EECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEe
Confidence            345566666666664     4788999999999998888888888888888775 57777776666555443

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=6.8e-12  Score=115.09  Aligned_cols=72  Identities=22%  Similarity=0.475  Sum_probs=61.3

Q ss_pred             eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEe
Q 020813          246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA  317 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~  317 (321)
                      +++|++|.|++++.|..|+||.+|.||+.+.|.+|++.+|++||+|+.|++|+||.++.|++|+.+.++.+.
T Consensus       335 ~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig  406 (433)
T KOG1462|consen  335 SIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIG  406 (433)
T ss_pred             hccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEec
Confidence            578888888888888888888888888888888888888888888888888888888888888888876553

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.30  E-value=8.6e-11  Score=102.46  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=16.8

Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      ++.|++++.|+.++.+. ++.|+++++|++++.+.
T Consensus       150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~  184 (205)
T cd03352         150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVT  184 (205)
T ss_pred             ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEe
Confidence            44455555555554443 44555555555555444

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.30  E-value=4.7e-11  Score=103.12  Aligned_cols=83  Identities=25%  Similarity=0.476  Sum_probs=40.0

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEE------e-ceEECCCCEECCCcEEe-ceEE
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV------V-NSVVMNHVTIGDGCSIQ-GSVI  282 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I------~-~siI~~~v~Ig~~~~I~-~~iI  282 (321)
                      .+.+.+.|++++.|++++.|++++.|+++|.|. +++|++++.||+++.|      . ++.|++++.||+++.+. ++.|
T Consensus        95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i  174 (201)
T TIGR03570        95 IVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTI  174 (201)
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEE
Confidence            344445555555555555555555555555443 3444444444444444      3 34445555555554443 4444


Q ss_pred             CCCCEECcCcEe
Q 020813          283 CSNAQLQERVAL  294 (321)
Q Consensus       283 ~~~~~Ig~~~~i  294 (321)
                      ++++.|++++++
T Consensus       175 ~~~~~i~~~~~v  186 (201)
T TIGR03570       175 GAGAIVGAGAVV  186 (201)
T ss_pred             CCCCEECCCCEE
Confidence            444444444444

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=7.2e-12  Score=116.65  Aligned_cols=93  Identities=18%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             ECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCC
Q 020813          225 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQG  302 (321)
Q Consensus       225 i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~  302 (321)
                      |...+.||.+++|..++.|+. +.||++|+||++|.|.+|.|++++.|...+.|++|.|++++.||+.++|+ ++.++++
T Consensus       265 i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~  344 (460)
T COG1207         265 IRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGAD  344 (460)
T ss_pred             EcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCC
Confidence            334444455555555555543 68888888888888888888888888888888888888888888888887 7888888


Q ss_pred             cEEcCCcEEcCCeEe
Q 020813          303 YVVSAGCEYKGESLA  317 (321)
Q Consensus       303 ~~V~~~~~i~~~~~~  317 (321)
                      +.||.-+.+++.++-
T Consensus       345 ~hIGNFVEvK~a~ig  359 (460)
T COG1207         345 VHIGNFVEVKKATIG  359 (460)
T ss_pred             CeEeeeEEEeccccc
Confidence            888887777765543

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.29  E-value=5.2e-11  Score=101.96  Aligned_cols=98  Identities=27%  Similarity=0.508  Sum_probs=65.5

Q ss_pred             cccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEE
Q 020813          206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVI  282 (321)
Q Consensus       206 ~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI  282 (321)
                      +......+.+.+.++.++.|++++.|++++.||++|.|. +++|+++|.||+++.|. ++++.++++||++|.|+ +++|
T Consensus        86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v  165 (197)
T cd03360          86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI  165 (197)
T ss_pred             EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence            344456677777788888888888888888888887775 47777777777777774 55566666666666665 5555


Q ss_pred             CCCCEECcCcEecCeEECCCcEEcCC
Q 020813          283 CSNAQLQERVALKDCQVGQGYVVSAG  308 (321)
Q Consensus       283 ~~~~~Ig~~~~i~~~iIg~~~~V~~~  308 (321)
                      .+++.|++     +|+|+++++|..+
T Consensus       166 ~~~~~ig~-----~~~v~~~~~v~~~  186 (197)
T cd03360         166 IQGVTIGA-----GAIIGAGAVVTKD  186 (197)
T ss_pred             cCCCEECC-----CCEECCCCEEcCC
Confidence            55555553     4445555555443

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.28  E-value=9.8e-11  Score=95.12  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=43.0

Q ss_pred             ceEECCCCEECCCcEEe-----c----eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEe
Q 020813          262 NSVVMNHVTIGDGCSIQ-----G----SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA  317 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-----~----~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~  317 (321)
                      +++|+++|.||+++.|.     +    +.|++++.||.++.| +..||++++|++|+++...+.+
T Consensus        47 ~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i  110 (147)
T cd04649          47 GVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCIVEAGLYVTAGTKV  110 (147)
T ss_pred             CEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE-eEEECCCCEECCCCEEeCCeEE
Confidence            34566666666666664     3    789999999999998 7899999999999988877654

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.28  E-value=4.3e-11  Score=117.65  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             eEECCCCEECCCcEEeceEECCCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++|+.++.|+..+.+.+++|+++|.||.++.+.        +++||+++.||.++.|. ++.||++++|++|+.+..
T Consensus       358 ~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~  434 (482)
T PRK14352        358 ATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRE  434 (482)
T ss_pred             cEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcC
Confidence            344444444444444455555555566555553        25566666666666543 456666666666665543

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.27  E-value=2.6e-11  Score=101.09  Aligned_cols=78  Identities=27%  Similarity=0.428  Sum_probs=48.1

Q ss_pred             CEECCCCEECCCCeEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCc
Q 020813          229 CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGY  303 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~  303 (321)
                      ..||+++.|.++|.|.     .+.||++|+||.++.|..|.|+++|.||-|++|     .+++.||     ++|+||+|+
T Consensus        51 I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~v-----ldga~IG-----~~~iVgAga  120 (176)
T COG0663          51 IRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATV-----LDGAVIG-----DGSIVGAGA  120 (176)
T ss_pred             eEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCceE-----eCCcEEC-----CCcEEccCC
Confidence            3467777777777665     467888888888887776666666666665555     4444444     344445555


Q ss_pred             EEcCCcEEcCCeE
Q 020813          304 VVSAGCEYKGESL  316 (321)
Q Consensus       304 ~V~~~~~i~~~~~  316 (321)
                      .|.++..+++..+
T Consensus       121 lV~~~k~~p~~~L  133 (176)
T COG0663         121 LVTPGKEIPGGSL  133 (176)
T ss_pred             cccCCcCCCCCeE
Confidence            5555555544443

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.26  E-value=5.5e-11  Score=105.46  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=71.9

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEec---------eEECCCCEECCCcEEe
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~  278 (321)
                      .+..|++++.|++++.|++++.||++|.|+.++.|. +++||++|.|+.++.|.+         ++|+++|.||.++.|.
T Consensus        97 g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~  176 (231)
T TIGR03532        97 DQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL  176 (231)
T ss_pred             CCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEc
Confidence            355666666666667777777778888888777776 589999999999999974         7788888888888885


Q ss_pred             -ceEECCCCEECcCcEecCeEECCCcE
Q 020813          279 -GSVICSNAQLQERVALKDCQVGQGYV  304 (321)
Q Consensus       279 -~~iI~~~~~Ig~~~~i~~~iIg~~~~  304 (321)
                       +++|++++.|++++.+.+. |.++++
T Consensus       177 ~g~~Ig~~~~IgagsvV~~d-i~~~~v  202 (231)
T TIGR03532       177 EGVRVGKGAVVAAGAIVTED-VPPNTV  202 (231)
T ss_pred             CCCEECCCCEECCCCEEccc-cCCCcE
Confidence             8888888888887777643 334433

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.25  E-value=1.5e-10  Score=89.55  Aligned_cols=84  Identities=17%  Similarity=0.244  Sum_probs=67.1

Q ss_pred             CCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEE
Q 020813          228 HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVV  305 (321)
Q Consensus       228 ~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V  305 (321)
                      ++.|++++.|++++.|.. +.||++|.|++++.|. +++|+++|.||.  .|.+|+|++++.|+.++.|.+++||+++.|
T Consensus        11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~i   88 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNL   88 (101)
T ss_pred             CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEE
Confidence            355555555555555543 6888888888888887 478888888865  578999999999999999999999999999


Q ss_pred             cCCcEEcC
Q 020813          306 SAGCEYKG  313 (321)
Q Consensus       306 ~~~~~i~~  313 (321)
                      ++++...+
T Consensus        89 g~~~~~~~   96 (101)
T cd05635          89 GAGTNNSD   96 (101)
T ss_pred             CCCceecc
Confidence            99988665

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.25  E-value=7.4e-11  Score=102.77  Aligned_cols=92  Identities=25%  Similarity=0.445  Sum_probs=61.9

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece-----------------E---------
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-----------------V---------  264 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s-----------------i---------  264 (321)
                      ..|++++.|++++.+. ++.||+++.|+.++.|.+++||++|.|++++.|...                 .         
T Consensus        20 ~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~~   98 (204)
T TIGR03308        20 SKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDDA   98 (204)
T ss_pred             cEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccccccccccc
Confidence            3445555555555553 567778888888888888999999999999988632                 0         


Q ss_pred             ------ECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCC
Q 020813          265 ------VMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAG  308 (321)
Q Consensus       265 ------I~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~  308 (321)
                            ...++.||++|+|+ +++|.+++.||     .+++|+++++|..+
T Consensus        99 ~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig-----~~~~I~~gs~v~~~  144 (204)
T TIGR03308        99 DFFAWRRAKRVTIGHDVWIGHGAVILPGVTIG-----NGAVIAAGAVVTKD  144 (204)
T ss_pred             cccccccCCCeEECCCCEECCCCEECCCCEEC-----CCCEECCCCEECCC
Confidence                  11345555555554 44444444444     69999999997765

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.25  E-value=7.4e-11  Score=115.15  Aligned_cols=40  Identities=20%  Similarity=0.285  Sum_probs=25.2

Q ss_pred             CCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhh
Q 020813           71 DLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~  110 (321)
                      .++++|+|+|+++.|...+++..    .....-.|+++.|++.+
T Consensus       166 ~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g  209 (458)
T PRK14354        166 KEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEG  209 (458)
T ss_pred             cEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCC
Confidence            47899999999986544543210    01112358888888765

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5.9e-11  Score=112.10  Aligned_cols=97  Identities=27%  Similarity=0.448  Sum_probs=78.2

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCC
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNA  286 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~  286 (321)
                      ...+.+|.+++.|++++.|+++++||++|.|++++.|.+|+|.++|.|++++.|.+|+|+.+|+||+++ .    +++ +
T Consensus       258 i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-~----i~d-~  331 (358)
T COG1208         258 IIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-I----IGD-V  331 (358)
T ss_pred             EeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-e----ecc-e
Confidence            345778899999999999999999999999999999999999999999999999999999999999922 2    777 7


Q ss_pred             EECcCcEec-CeEECCCcEEcCCc
Q 020813          287 QLQERVALK-DCQVGQGYVVSAGC  309 (321)
Q Consensus       287 ~Ig~~~~i~-~~iIg~~~~V~~~~  309 (321)
                      .+|.++.+. +.++++++++.++.
T Consensus       332 ~~g~~~~i~~g~~~~~~~~~~~~~  355 (358)
T COG1208         332 VIGINSEILPGVVVGPGSVVESGE  355 (358)
T ss_pred             EecCceEEcCceEeCCCccccCcc
Confidence            777555443 44444444444443

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=99.23  E-value=5.7e-11  Score=112.83  Aligned_cols=62  Identities=23%  Similarity=0.354  Sum_probs=36.4

Q ss_pred             CCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813          250 RHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       250 ~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~  313 (321)
                      +.+.|++++.|.+|+|+++|+|+  +.|.+|+|+++|.|+++|.|.+|+|++++.|++++.+.+
T Consensus       277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~  338 (369)
T TIGR02092       277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN  338 (369)
T ss_pred             CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE
Confidence            44555555555566666666664  245566666666666666666666666666665555544

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.22  E-value=1e-10  Score=111.51  Aligned_cols=86  Identities=23%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             CCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEc
Q 020813          227 PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVS  306 (321)
Q Consensus       227 ~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~  306 (321)
                      ..+.+.+.+.|++++.|.+|.||++|.|+.  .+.+|+|+++|.||++|.|.+|+|++++.|++++.|.+|+|++++.|+
T Consensus       275 ~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~  352 (380)
T PRK05293        275 SVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIG  352 (380)
T ss_pred             cCCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEEC
Confidence            344455566666677777789999999963  578999999999999999999999999999999999999999999999


Q ss_pred             CCcEEcCC
Q 020813          307 AGCEYKGE  314 (321)
Q Consensus       307 ~~~~i~~~  314 (321)
                      +++.+.+.
T Consensus       353 ~~~~i~~~  360 (380)
T PRK05293        353 DGVIIGGG  360 (380)
T ss_pred             CCCEEcCC
Confidence            99999875

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.20  E-value=1e-10  Score=110.70  Aligned_cols=67  Identities=15%  Similarity=0.217  Sum_probs=54.3

Q ss_pred             EECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          247 VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      .+-+.+.|++.+.+.+|+|+++|.|+++ .|.+|+|+++|.|++++.|.+|+|++++.|++++.+.+.
T Consensus       279 ~~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~  345 (361)
T TIGR02091       279 FLPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNA  345 (361)
T ss_pred             CCCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeee
Confidence            3445667777777788889999999876 788899999999999999988888888888887777543

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.18  E-value=1.9e-10  Score=103.96  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=18.6

Q ss_pred             eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          280 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      +.||++|.||.|+.| +..||++++|++|+.+...
T Consensus       251 V~IGe~~lIGagA~I-GI~IGd~~iIGAGavVtag  284 (341)
T TIGR03536       251 ISVGEGCLLGANAGI-GIPLGDRCTVEAGLYITAG  284 (341)
T ss_pred             EEECCCcEECCCCEE-eeEECCCCEECCCCEEeCC
Confidence            455666666666655 5555555555555544443

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.15  E-value=5.3e-10  Score=88.68  Aligned_cols=81  Identities=17%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEEC----------CCcEEeceEECCCCEECCCcEEe-ce
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIG----------SNVKVVNSVVMNHVTIGDGCSIQ-GS  280 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig----------~~~~I~~siI~~~v~Ig~~~~I~-~~  280 (321)
                      ++.+++.|++++.|++++.|++++.|+++|     .|++++.++          .++.+.+++|++++.||+++.+. ++
T Consensus        12 ~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~-----~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~   86 (119)
T cd03358          12 FIENDVKIGDNVKIQSNVSIYEGVTIEDDV-----FIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGV   86 (119)
T ss_pred             EECCCcEECCCcEECCCcEEeCCeEECCCc-----EEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCc
Confidence            344444444444444444444444444444     344444332          33457788899999999998886 68


Q ss_pred             EECCCCEECcCcEecCe
Q 020813          281 VICSNAQLQERVALKDC  297 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~~~  297 (321)
                      +|++++.|++++.+...
T Consensus        87 ~ig~~~~i~~~~~v~~~  103 (119)
T cd03358          87 TIGEYALVGAGAVVTKD  103 (119)
T ss_pred             EECCCCEEccCCEEeCc
Confidence            88888888877776543

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.14  E-value=2.6e-10  Score=98.70  Aligned_cols=49  Identities=20%  Similarity=0.215  Sum_probs=26.1

Q ss_pred             eEECCCCEECCCcEEece--------EECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          246 SVIGRHCRIGSNVKVVNS--------VVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~s--------iI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      .+||+||+|.++++|...        .|+++.-+-.+++|. +|+||++|.+..++.|
T Consensus        82 l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatL  139 (260)
T COG1043          82 LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATL  139 (260)
T ss_pred             EEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeE
Confidence            468888888888877632        333333333333333 4444444444444444

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.13  E-value=7.7e-10  Score=100.05  Aligned_cols=92  Identities=20%  Similarity=0.393  Sum_probs=57.8

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCE-ECCCCe---Ee-ceEECCCCEECCCcEEeceEECCC----CEECCCcEEe-ceEE
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQ-MGDKCS---VK-RSVIGRHCRIGSNVKVVNSVVMNH----VTIGDGCSIQ-GSVI  282 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~-I~~~~~---I~-~svIg~~~~Ig~~~~I~~siI~~~----v~Ig~~~~I~-~~iI  282 (321)
                      |.+++++++++.|.++++|+.++. +|.++.   |. .++||++|.||.+|.| .+++..+    |.||++|.|+ +|.|
T Consensus       187 Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lIGagA~I  265 (341)
T TIGR03536       187 VRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLLGANAGI  265 (341)
T ss_pred             EcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEECCCCEE
Confidence            334444444444444444444444 343332   33 3688999999999999 4455555    7777777776 6666


Q ss_pred             CCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813          283 CSNAQLQERVALKDCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       283 ~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~  312 (321)
                        +..||     ++|+||.|++|.++|++.
T Consensus       266 --GI~IG-----d~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       266 --GIPLG-----DRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             --eeEEC-----CCCEECCCCEEeCCcEEE
Confidence              66666     577788888888887764

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK10191 putative acyl transferase; Provisional

Probab=99.12  E-value=6.5e-10  Score=91.47  Aligned_cols=96  Identities=19%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcEE--eceEECCCCEECCCcEEe-ceEECC
Q 020813          210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV--VNSVVMNHVTIGDGCSIQ-GSVICS  284 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I--~~siI~~~v~Ig~~~~I~-~~iI~~  284 (321)
                      +..|++.+.+++++.+++  ++.|++++.||+++     .|+++|+||+....  ..+.|+++|.||.++.+. ++.|++
T Consensus        41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~-----~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~  115 (146)
T PRK10191         41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDF-----TIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGN  115 (146)
T ss_pred             CcccCCCCEECCCeEECCCCeEEECCCcEECCCC-----EECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECC
Confidence            345667777777777766  45666666666665     55666666654332  235788888888888887 688888


Q ss_pred             CCEECcCcEecCeEECCCcEEcCCcE
Q 020813          285 NAQLQERVALKDCQVGQGYVVSAGCE  310 (321)
Q Consensus       285 ~~~Ig~~~~i~~~iIg~~~~V~~~~~  310 (321)
                      ++.|++++.+.+.+-....+++..++
T Consensus       116 ~~~Igags~V~~dv~~~~~v~G~pA~  141 (146)
T PRK10191        116 NVTVGAGSVVLDSVPDNALVVGEKAR  141 (146)
T ss_pred             CCEECCCCEECCccCCCcEEEccCcE
Confidence            88888888887665555555555444

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.12  E-value=4.2e-10  Score=94.60  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      ++|+++|.||.++.|. +++||+++.||+++.+.
T Consensus       114 ~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~  147 (162)
T TIGR01172       114 PTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVL  147 (162)
T ss_pred             CEECCCcEEcCCCEEECCcEECCCCEECCCCEEC
Confidence            4677777777777665 56677777666665554

Cysteine biosynthesis

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.12  E-value=9.8e-10  Score=94.04  Aligned_cols=81  Identities=23%  Similarity=0.390  Sum_probs=53.9

Q ss_pred             CeeeCCCCe--eCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEec-------------eEECCCCEECCC
Q 020813          210 NNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN-------------SVVMNHVTIGDG  274 (321)
Q Consensus       210 ~~~i~p~a~--i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~-------------siI~~~v~Ig~~  274 (321)
                      +.+|.|+..  ++.++.||+++.|+.+|+|++.+.|   .||++|.|+++|.|..             ..+...+.||++
T Consensus        59 ~~~i~~~~~~~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~  135 (183)
T PRK10092         59 EAYIEPTFRCDYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN  135 (183)
T ss_pred             CEEEeCCEEEeecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC
Confidence            456667664  4677788888888888887776655   8999999999998851             223445566666


Q ss_pred             cEEe-ceEECCCCEECcCcE
Q 020813          275 CSIQ-GSVICSNAQLQERVA  293 (321)
Q Consensus       275 ~~I~-~~iI~~~~~Ig~~~~  293 (321)
                      |+|+ +++|.++++||++++
T Consensus       136 v~IG~~a~I~~gv~IG~~~v  155 (183)
T PRK10092        136 VWIGGRAVINPGVTIGDNVV  155 (183)
T ss_pred             cEECCCCEECCCCEECCCCE
Confidence            6664 555555555554333

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.10  E-value=4.6e-10  Score=98.97  Aligned_cols=99  Identities=21%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             CeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEece-EECCCCEECCCcEEec---------eEECCC
Q 020813          217 AELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNS-VVMNHVTIGDGCSIQG---------SVICSN  285 (321)
Q Consensus       217 a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~s-iI~~~v~Ig~~~~I~~---------~iI~~~  285 (321)
                      ++|.+++++..+++|++|+++..++.|. ++.++.++.|.-+++++.| +|+.||+||.++.|.+         .+|++|
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn  188 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN  188 (271)
T ss_pred             eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence            4444444444444444444444433333 2445555555555555433 3666666666666643         466677


Q ss_pred             CEECcCc-EecCeEECCCcEEcCCcEEcCCe
Q 020813          286 AQLQERV-ALKDCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       286 ~~Ig~~~-~i~~~iIg~~~~V~~~~~i~~~~  315 (321)
                      |.||+++ .+.++.||++|+|.+|..+...+
T Consensus       189 cliGAns~~veGV~vGdg~VV~aGv~I~~~t  219 (271)
T COG2171         189 CLIGANSEVVEGVIVGDGCVVAAGVFITQDT  219 (271)
T ss_pred             cEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence            7777766 44566666666666665555443

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.10  E-value=3.1e-10  Score=109.77  Aligned_cols=74  Identities=20%  Similarity=0.376  Sum_probs=69.3

Q ss_pred             CeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCe
Q 020813          241 CSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       241 ~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~  315 (321)
                      +.+.+|+||++|.| ++|.|.+|+|+++|.||++|.|.+|+|+++|.||++++|.+|+|++++.|++++++++..
T Consensus       323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~  396 (425)
T PRK00725        323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDP  396 (425)
T ss_pred             ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCC
Confidence            35668999999999 799999999999999999999999999999999999999999999999999999998653

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.08  E-value=4.6e-10  Score=104.45  Aligned_cols=82  Identities=26%  Similarity=0.430  Sum_probs=74.4

Q ss_pred             CCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813          232 GEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       232 g~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i  311 (321)
                      .+.+.+.+++.+.+|.|+.+|.|..  +|.+|+|+.+++|+++|.|.+|+|.+++.||+||.|++|+|..+++|++|+++
T Consensus       283 ~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i  360 (393)
T COG0448         283 LPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVI  360 (393)
T ss_pred             CCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEE
Confidence            3445556666788899999999966  99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCe
Q 020813          312 KGES  315 (321)
Q Consensus       312 ~~~~  315 (321)
                      .+..
T Consensus       361 ~~~~  364 (393)
T COG0448         361 GGDK  364 (393)
T ss_pred             cCCc
Confidence            9873

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.07  E-value=7.4e-10  Score=106.66  Aligned_cols=71  Identities=20%  Similarity=0.320  Sum_probs=68.0

Q ss_pred             eEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813          242 SVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       242 ~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~  313 (321)
                      .+.+++||++|.|+ +++|.+|+|+++|.|+++|.|.+|+|++++.|++++.|.+|+|+++++|++++++.+
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence            45678999999999 999999999999999999999999999999999999999999999999999999977

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.07  E-value=7.7e-10  Score=104.47  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=63.5

Q ss_pred             CCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEE-----eceEECCCCEECcCc-EecCeEECC
Q 020813          228 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-----QGSVICSNAQLQERV-ALKDCQVGQ  301 (321)
Q Consensus       228 ~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I-----~~~iI~~~~~Ig~~~-~i~~~iIg~  301 (321)
                      .+.+.+.+.|+++|.|.+++|+.+|.||++|+|++|+|+++|+||++|.|     .+|+|++++.|+.++ .+.+++|++
T Consensus       248 ~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~  327 (353)
T TIGR01208       248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGK  327 (353)
T ss_pred             CCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcC
Confidence            34444445555555555566666677777777777777777777777766     488999999998884 888999999


Q ss_pred             CcEEcCCcEEcC
Q 020813          302 GYVVSAGCEYKG  313 (321)
Q Consensus       302 ~~~V~~~~~i~~  313 (321)
                      ++.|++++.+.+
T Consensus       328 ~~~i~~~~~~~~  339 (353)
T TIGR01208       328 KVRIKGNRRRPG  339 (353)
T ss_pred             CCEECCCccccc
Confidence            999999988875

Alternate name: dTDP-D-glucose synthase

>PLN02694 serine O-acetyltransferase

Probab=99.07  E-value=8.5e-10  Score=99.65  Aligned_cols=83  Identities=22%  Similarity=0.311  Sum_probs=60.3

Q ss_pred             CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEEC---CCcEEeceEECCCCEECCCcEE-eceEEC
Q 020813          210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIG---SNVKVVNSVVMNHVTIGDGCSI-QGSVIC  283 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig---~~~~I~~siI~~~v~Ig~~~~I-~~~iI~  283 (321)
                      ...|+|.+.||+++.|..  +++||++|.||++|.|     ..+|++|   .++..++++|+++|.||.|+.| ++++||
T Consensus       160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I-----~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IG  234 (294)
T PLN02694        160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIG  234 (294)
T ss_pred             eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEE-----eecceeCCcccccCCCccEECCCeEECCeeEECCCCEEC
Confidence            456788888888777754  5666666666666644     3344443   3344567899999999999999 589999


Q ss_pred             CCCEECcCcEecCe
Q 020813          284 SNAQLQERVALKDC  297 (321)
Q Consensus       284 ~~~~Ig~~~~i~~~  297 (321)
                      +++.||++++|...
T Consensus       235 d~a~IGAgSVV~kd  248 (294)
T PLN02694        235 EGAKIGAGSVVLID  248 (294)
T ss_pred             CCCEECCCCEECCc
Confidence            99999999888653

>PRK10502 putative acyl transferase; Provisional

Probab=99.07  E-value=1.3e-09  Score=93.34  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=22.6

Q ss_pred             CCEECCCCEECCCCeEe---ceEECCCCEECCCcEEe
Q 020813          228 HCMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       228 ~~~Ig~~~~I~~~~~I~---~svIg~~~~Ig~~~~I~  261 (321)
                      +..||+++.|++++.|.   ..+||++|.|++++.|.
T Consensus        71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~  107 (182)
T PRK10502         71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC  107 (182)
T ss_pred             eEEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence            34555666666666554   36788888888888774

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.06  E-value=2.5e-09  Score=96.29  Aligned_cols=53  Identities=30%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             ceEECCCCEECCCcEEec---------eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCe
Q 020813          262 NSVVMNHVTIGDGCSIQG---------SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~  315 (321)
                      +|+|++++.|+.++.|.+         +.||++|.||.|+.| +..||++|+|++|+.+-..+
T Consensus       199 dvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVtkgT  260 (319)
T TIGR03535       199 GVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVTAGT  260 (319)
T ss_pred             CCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEeCCe
Confidence            345556666666666332         567777777777777 66666666666666655544

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.04  E-value=1.1e-09  Score=106.41  Aligned_cols=79  Identities=19%  Similarity=0.389  Sum_probs=68.4

Q ss_pred             CCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC----------------C---CEECcCcE
Q 020813          233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS----------------N---AQLQERVA  293 (321)
Q Consensus       233 ~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~----------------~---~~Ig~~~~  293 (321)
                      +++.+ .++.|.+|+|+++|.|+ ++.|.+|+|+++|.||++|.|.+|++..                +   +.|++++.
T Consensus       304 ~~~~~-~~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~  381 (436)
T PLN02241        304 PPSKI-EDCRITDSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTK  381 (436)
T ss_pred             CCcEe-cCCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCE
Confidence            44444 35677779999999999 9999999999999999999999888855                2   38999999


Q ss_pred             ecCeEECCCcEEcCCcEEcC
Q 020813          294 LKDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       294 i~~~iIg~~~~V~~~~~i~~  313 (321)
                      +.+++|++++.|++++.+.+
T Consensus       382 i~~~vI~~~v~Ig~~~~i~~  401 (436)
T PLN02241        382 IRNAIIDKNARIGKNVVIIN  401 (436)
T ss_pred             EcceEecCCCEECCCcEEec
Confidence            99999999999999998874

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.04  E-value=1.2e-09  Score=98.46  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=26.2

Q ss_pred             ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      +++|+++|.||.||.|. ++.||+++.||+|+++..
T Consensus       193 ~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~  228 (273)
T PRK11132        193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQ  228 (273)
T ss_pred             CCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence            45778888888887776 777888888887777654

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.03  E-value=2.6e-09  Score=96.13  Aligned_cols=90  Identities=23%  Similarity=0.367  Sum_probs=58.4

Q ss_pred             CCCCeeCCCcEECCCCEECCCC-EECCCCeEeceEECCCCEECCCcEEe-ceE----ECCC----CEECCCcEEe-ceEE
Q 020813          214 HPSAELGSKTTVGPHCMLGEGS-QMGDKCSVKRSVIGRHCRIGSNVKVV-NSV----VMNH----VTIGDGCSIQ-GSVI  282 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~-~I~~~~~I~~svIg~~~~Ig~~~~I~-~si----I~~~----v~Ig~~~~I~-~~iI  282 (321)
                      .-+|++++++.|.++++|..++ +||+. .| ++.|+++|+||+++.|. ++.    +..+    +.||++|.|+ +|.|
T Consensus       163 RlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I  240 (319)
T TIGR03535       163 RLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL  240 (319)
T ss_pred             eeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE
Confidence            3456677777777777777777 57764 44 56677777777777665 333    2335    6677777666 6665


Q ss_pred             CCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813          283 CSNAQLQERVALKDCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       283 ~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~  312 (321)
                        +..||     ++|+||.|++|.++|++.
T Consensus       241 --GI~IG-----d~~VVGAGaVVtkgT~v~  263 (319)
T TIGR03535       241 --GISLG-----DDCVVEAGLYVTAGTKVT  263 (319)
T ss_pred             --CeEEC-----CCCEECCCCEEeCCeEEE
Confidence              56666     466677777777776654

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.02  E-value=1.3e-09  Score=105.69  Aligned_cols=82  Identities=17%  Similarity=0.309  Sum_probs=72.1

Q ss_pred             ECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC-------------------CCEECcC
Q 020813          231 LGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS-------------------NAQLQER  291 (321)
Q Consensus       231 Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~-------------------~~~Ig~~  291 (321)
                      +.+.+.+. ++.+.+|.||++|.| +++.|.+|+|+++|+||++|.|.+|+|+.                   ++.||++
T Consensus       295 ~~~~a~~~-~~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~  372 (429)
T PRK02862        295 YLPPSKLL-DATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEG  372 (429)
T ss_pred             CCCCcccc-ccEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCC
Confidence            34444443 567788999999999 89999999999999999999999999976                   7999999


Q ss_pred             cEecCeEECCCcEEcCCcEEcCC
Q 020813          292 VALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       292 ~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      |.|.+|+|++++.|++++.+.+.
T Consensus       373 ~~i~~~ii~~~~~i~~~~~~~~~  395 (429)
T PRK02862        373 TTIKRAIIDKNARIGNNVRIVNK  395 (429)
T ss_pred             CEEEEEEECCCcEECCCcEEecC
Confidence            99999999999999999999643

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.01  E-value=4e-09  Score=89.25  Aligned_cols=49  Identities=24%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             CeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813          210 NNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       210 ~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~  261 (321)
                      +..+.+++.+  +.++.|++++.|+.++.|.+.+   +.+||++|.|+++|.|.
T Consensus        48 ~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~~~~---~i~IG~~v~Ig~~~~I~   98 (169)
T cd03357          48 NVYIEPPFHCDYGYNIHIGDNFYANFNCTILDVA---PVTIGDNVLIGPNVQIY   98 (169)
T ss_pred             CCEEcCCEEEEeCCcCEECCCceEcCCEEEeccC---cEEECCCCEECCCCEEE
Confidence            3344444433  3445555555555555554322   34788888888888884

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02357 serine acetyltransferase

Probab=99.00  E-value=2.9e-09  Score=98.83  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCC---cEEeceEECCCCEECCCcEE-eceEEC
Q 020813          210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSN---VKVVNSVVMNHVTIGDGCSI-QGSVIC  283 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~---~~I~~siI~~~v~Ig~~~~I-~~~iI~  283 (321)
                      ...|+|.+.||.++.+..  +++||++++||++|     .|+.+|+||..   ....+++|+++|.||.|+.| ++++||
T Consensus       226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV-----~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IG  300 (360)
T PLN02357        226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNV-----SILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIG  300 (360)
T ss_pred             ceeeCCCCEECCCeEECCCCceEECCCCEECCCC-----EEeCCceecCccccCCccCceeCCCeEECCceEEECCeEEC
Confidence            456777777777777754  45666666666665     33444444321   12346889999999999888 489999


Q ss_pred             CCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813          284 SNAQLQERVALKDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       284 ~~~~Ig~~~~i~~~iIg~~~~V~~~~~i  311 (321)
                      +++.||++++|...+-...+++|.-+++
T Consensus       301 dga~IGAgSVV~~dVP~~~~v~G~PArv  328 (360)
T PLN02357        301 EGAKIGAGSVVLKDVPPRTTAVGNPARL  328 (360)
T ss_pred             CCCEECCCCEECcccCCCcEEECCCeEE
Confidence            9999999998876544444444544443

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.00  E-value=5.9e-09  Score=90.53  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             cCCeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813          208 AQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       208 ~~~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~  261 (321)
                      +.+.+|.|++.+  +.++.||.++.|+.+|.|.++.   +..||++|.|+++|.|.
T Consensus        59 g~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~---~I~IGd~v~Ig~~v~I~  111 (203)
T PRK09527         59 GENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLS  111 (203)
T ss_pred             CCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCC---CEEECCCCEECCCCEEE
Confidence            345667777665  3556666666666666654432   35889999999998885

>PLN02694 serine O-acetyltransferase

Probab=98.99  E-value=1.6e-09  Score=97.80  Aligned_cols=85  Identities=21%  Similarity=0.405  Sum_probs=46.5

Q ss_pred             EECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEe-cCeEECCC
Q 020813          224 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVGQG  302 (321)
Q Consensus       224 ~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i-~~~iIg~~  302 (321)
                      .|++++.||+++.|..++   .++||++|.||++|.|.+.+...++  +.++..++++|+++|.||+|++| .++.||++
T Consensus       162 dI~p~A~IG~gv~Idh~t---GVVIGe~a~IGdnv~I~~~VtLGg~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~  236 (294)
T PLN02694        162 DIHPAAKIGKGILFDHAT---GVVIGETAVIGNNVSILHHVTLGGT--GKACGDRHPKIGDGVLIGAGATILGNVKIGEG  236 (294)
T ss_pred             EeCCcceecCCEEEeCCC---CeEECCCcEECCCCEEeecceeCCc--ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence            344444444444443321   2466666666666655433322222  23344556677777777777766 46667777


Q ss_pred             cEEcCCcEEcC
Q 020813          303 YVVSAGCEYKG  313 (321)
Q Consensus       303 ~~V~~~~~i~~  313 (321)
                      ++|++|+++..
T Consensus       237 a~IGAgSVV~k  247 (294)
T PLN02694        237 AKIGAGSVVLI  247 (294)
T ss_pred             CEECCCCEECC
Confidence            77777666654

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.99  E-value=3.3e-09  Score=95.69  Aligned_cols=84  Identities=20%  Similarity=0.345  Sum_probs=40.3

Q ss_pred             CCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCC---cEEeceEECCCCEECcCcEec-C
Q 020813          221 SKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDG---CSIQGSVICSNAQLQERVALK-D  296 (321)
Q Consensus       221 ~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~---~~I~~~iI~~~~~Ig~~~~i~-~  296 (321)
                      .++.|++++.||+++.|+.++.   .+||++|.||++|.|     +++|+||..   +.....+|+++|.||+|+.|. +
T Consensus       140 ~gidI~~~a~IG~g~~I~h~~g---ivIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg  211 (273)
T PRK11132        140 FQVDIHPAAKIGRGIMLDHATG---IVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN  211 (273)
T ss_pred             eeeEecCcceECCCeEEcCCCC---eEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC
Confidence            3444444444555555544332   255666666665543     334444421   112234555555555555443 4


Q ss_pred             eEECCCcEEcCCcEEc
Q 020813          297 CQVGQGYVVSAGCEYK  312 (321)
Q Consensus       297 ~iIg~~~~V~~~~~i~  312 (321)
                      +.||++++|++|+.+.
T Consensus       212 v~IG~~a~IGAgSvV~  227 (273)
T PRK11132        212 IEVGRGAKIGAGSVVL  227 (273)
T ss_pred             CEECCCCEECCCCEEC
Confidence            5555555555555544

>PRK10502 putative acyl transferase; Provisional

Probab=98.99  E-value=5.1e-09  Score=89.69  Aligned_cols=65  Identities=25%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             EECCCCEECCCcEEe---ceEECCCCEECCCcEEe----------------ceEECCCCEECcCcEec-CeEECCCcEEc
Q 020813          247 VIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQ----------------GSVICSNAQLQERVALK-DCQVGQGYVVS  306 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~---~siI~~~v~Ig~~~~I~----------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~  306 (321)
                      .||++|.|++++.|.   ...|+++|.|++++.|.                ..+|++++.||+++.|. ++.||++++|+
T Consensus        73 ~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIg  152 (182)
T PRK10502         73 TIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVG  152 (182)
T ss_pred             EECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEEC
Confidence            444444444444443   23455555555555442                13555555555555542 55555555555


Q ss_pred             CCcEE
Q 020813          307 AGCEY  311 (321)
Q Consensus       307 ~~~~i  311 (321)
                      +++.+
T Consensus       153 a~svV  157 (182)
T PRK10502        153 ARSSV  157 (182)
T ss_pred             CCCEE
Confidence            55543

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.97  E-value=1.1e-08  Score=88.46  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=18.6

Q ss_pred             CEECCCCEECCCCeEe---ceEECCCCEECCCcEEe
Q 020813          229 CMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~---~svIg~~~~Ig~~~~I~  261 (321)
                      ..||+++.|++++.|.   ..+||++|.|++++.|.
T Consensus        66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~  101 (192)
T PRK09677         66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFIT  101 (192)
T ss_pred             EEECCCCEECCCcEEccCceEEECCCCEECCCeEEE
Confidence            3444444444444443   35677777777777665

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.97  E-value=7.4e-09  Score=79.91  Aligned_cols=77  Identities=26%  Similarity=0.481  Sum_probs=35.3

Q ss_pred             eCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcE---EeceEECCCCEECCCcEEe-ceEECCCC
Q 020813          213 IHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVICSNA  286 (321)
Q Consensus       213 i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~---I~~siI~~~v~Ig~~~~I~-~~iI~~~~  286 (321)
                      |++.++|++++.++.  .++|++++.|++++     .|++++.|+.++.   +..++|++++.|+.++.+. ++.|++++
T Consensus         5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~-----~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~   79 (101)
T cd03354           5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNC-----TIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNV   79 (101)
T ss_pred             eCCCCEECCCEEECCCCeEEECCCCEECCCC-----EEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCC
Confidence            344444444444433  23344444444433     3444444444443   3445555555555555554 34455555


Q ss_pred             EECcCcEe
Q 020813          287 QLQERVAL  294 (321)
Q Consensus       287 ~Ig~~~~i  294 (321)
                      .|++++.+
T Consensus        80 ~i~~~~~i   87 (101)
T cd03354          80 KIGANAVV   87 (101)
T ss_pred             EECCCCEE
Confidence            55444443

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.96  E-value=1e-08  Score=79.07  Aligned_cols=84  Identities=19%  Similarity=0.308  Sum_probs=59.1

Q ss_pred             cEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcE---EeceEECCCCEECcCcEec-CeE
Q 020813          223 TTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS---IQGSVICSNAQLQERVALK-DCQ  298 (321)
Q Consensus       223 ~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~---I~~~iI~~~~~Ig~~~~i~-~~i  298 (321)
                      +.|++++.|++++.|+.+.   .++||+++.||+++.     |++++.|++++.   ++.++|++++.|+.++.+. ++.
T Consensus         3 ~~i~~~~~ig~~~~i~~~~---~~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~   74 (101)
T cd03354           3 IDIHPGAKIGPGLFIDHGT---GIVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNIT   74 (101)
T ss_pred             eEeCCCCEECCCEEECCCC---eEEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCE
Confidence            3445555555555554431   246777777777765     467777777775   5688889999999888876 488


Q ss_pred             ECCCcEEcCCcEEcCC
Q 020813          299 VGQGYVVSAGCEYKGE  314 (321)
Q Consensus       299 Ig~~~~V~~~~~i~~~  314 (321)
                      |+++++|++++.+...
T Consensus        75 Ig~~~~i~~~~~i~~~   90 (101)
T cd03354          75 IGDNVKIGANAVVTKD   90 (101)
T ss_pred             ECCCCEECCCCEECcc
Confidence            8888888888887764

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.96  E-value=1.1e-08  Score=88.45  Aligned_cols=68  Identities=18%  Similarity=0.278  Sum_probs=39.1

Q ss_pred             eEECCCCEECCCcEEe---ceEECCCCEECCCcEEec----------------------------eEECCCCEECcCcEe
Q 020813          246 SVIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQG----------------------------SVICSNAQLQERVAL  294 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~---~siI~~~v~Ig~~~~I~~----------------------------~iI~~~~~Ig~~~~i  294 (321)
                      ..||++|.|++++.|.   +..|+++|.|++++.|.+                            ++|++++.||.++.+
T Consensus        66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i  145 (192)
T PRK09677         66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI  145 (192)
T ss_pred             EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence            3556666666666554   345666666666555531                            356666666666655


Q ss_pred             c-CeEECCCcEEcCCcEEcC
Q 020813          295 K-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       295 ~-~~iIg~~~~V~~~~~i~~  313 (321)
                      . +++||++++|++++.+.+
T Consensus       146 ~~g~~Ig~~~~Iga~s~v~~  165 (192)
T PRK09677        146 LPGVSIGNGCIVGANSVVTK  165 (192)
T ss_pred             cCCCEECCCCEECCCCEECc
Confidence            3 566666666666665554

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.96  E-value=7.1e-09  Score=75.37  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=18.3

Q ss_pred             ECCCCEECCCCeEec-eEECCCCEECCCcEEece
Q 020813          231 LGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNS  263 (321)
Q Consensus       231 Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~s  263 (321)
                      |++++.|++++.|.. ++||++|.|++++.|.++
T Consensus         3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~   36 (78)
T cd00208           3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA   36 (78)
T ss_pred             ECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence            333444444444443 567777777777766654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=3.2e-09  Score=94.61  Aligned_cols=90  Identities=12%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             ECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecC-------
Q 020813          225 VGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD-------  296 (321)
Q Consensus       225 i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~-------  296 (321)
                      |-++++|.+.+.+...+.|+. ..||.+++||+|++|.+|+|.++++|.+|+.+-+||||.++.||..+++++       
T Consensus       285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~  364 (407)
T KOG1460|consen  285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSP  364 (407)
T ss_pred             EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCC
Confidence            444555555555555555553 588999999999999999999999999999999999999999999988853       


Q ss_pred             -------eEECCCcEEcCCcEEcCC
Q 020813          297 -------CQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       297 -------~iIg~~~~V~~~~~i~~~  314 (321)
                             ++.|+.+.|++.+.+-+.
T Consensus       365 ~~~~~a~Tilga~v~v~dev~v~~s  389 (407)
T KOG1460|consen  365 NLPFAALTILGADVSVEDEVIVLNS  389 (407)
T ss_pred             CCCcceeEEecccceecceeEEeee
Confidence                   466677777666665554

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=98.95  E-value=7.2e-09  Score=75.34  Aligned_cols=63  Identities=24%  Similarity=0.467  Sum_probs=28.9

Q ss_pred             ECCCCEECCCcEEec-eEECCCCEECCCcEEec---------eEECCCCEECcCcEec-CeEECCCcEEcCCcE
Q 020813          248 IGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQG---------SVICSNAQLQERVALK-DCQVGQGYVVSAGCE  310 (321)
Q Consensus       248 Ig~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~  310 (321)
                      ||+++.|++++.|.. ++|++++.|++++.|.+         .+|++++.|+.++.+. ++.|+++++|++++.
T Consensus         3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~   76 (78)
T cd00208           3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV   76 (78)
T ss_pred             ECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence            444444444444442 44444444444444442         3445555555444442 344555555554444

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.94  E-value=3.2e-09  Score=93.69  Aligned_cols=83  Identities=17%  Similarity=0.356  Sum_probs=50.7

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeE------ec-eEECCCCEECCCcEEec---------eEECCCCEECCCc-
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSV------KR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGC-  275 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I------~~-svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~-  275 (321)
                      +.-+|+|++++.+.+.++|.=|+.++++|.|      +. .+||+||.||-++.|..         .+|++||.||+|+ 
T Consensus       117 VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~  196 (271)
T COG2171         117 VRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSE  196 (271)
T ss_pred             EeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccc
Confidence            3344455555555554444444445555544      33 67888888888888863         4577777777776 


Q ss_pred             EEeceEECCCCEECcCcEec
Q 020813          276 SIQGSVICSNAQLQERVALK  295 (321)
Q Consensus       276 ~I~~~iI~~~~~Ig~~~~i~  295 (321)
                      .+.+++++++|.|++|+.|.
T Consensus       197 ~veGV~vGdg~VV~aGv~I~  216 (271)
T COG2171         197 VVEGVIVGDGCVVAAGVFIT  216 (271)
T ss_pred             eEeeeEeCCCcEEecceEEe
Confidence            44466677666666666553

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.93  E-value=1.6e-09  Score=97.90  Aligned_cols=89  Identities=19%  Similarity=0.311  Sum_probs=80.8

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCC
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNA  286 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~  286 (321)
                      ..+.++++.+.+|++|.|++|++||++|+|++|+.|.+|+|-.+..++.++.|..++++.+++||.+++|. +|+||+|+
T Consensus       262 ~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV  341 (371)
T KOG1322|consen  262 VGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV  341 (371)
T ss_pred             cccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence            35778899999999999999999999999999999999999999999999999999999999999999887 78888888


Q ss_pred             EECcCcEecC
Q 020813          287 QLQERVALKD  296 (321)
Q Consensus       287 ~Ig~~~~i~~  296 (321)
                      .|.+.-.+++
T Consensus       342 ~V~d~~~vn~  351 (371)
T KOG1322|consen  342 IVADEDYVNE  351 (371)
T ss_pred             EEeccccccc
Confidence            8876555553

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.92  E-value=1.2e-08  Score=79.40  Aligned_cols=82  Identities=16%  Similarity=0.219  Sum_probs=34.5

Q ss_pred             CCCCeeCCCcEECC--CCEECCCCEECCCCeEece---EECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCE
Q 020813          214 HPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRS---VIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQ  287 (321)
Q Consensus       214 ~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~s---vIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~  287 (321)
                      ++++.|++++++..  ++.||++|.|+++|.|.++   .++.++.+........++|++++.|++++.+. ++.|++++.
T Consensus         5 g~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~   84 (109)
T cd04647           5 GDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAV   84 (109)
T ss_pred             CCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCE
Confidence            33444444444433  4444444444444444332   22222222222233344455555555554442 444455444


Q ss_pred             ECcCcEec
Q 020813          288 LQERVALK  295 (321)
Q Consensus       288 Ig~~~~i~  295 (321)
                      |++++.+.
T Consensus        85 i~~~~~v~   92 (109)
T cd04647          85 VGAGSVVT   92 (109)
T ss_pred             ECCCCEEe
Confidence            44444443

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.90  E-value=1.8e-09  Score=85.99  Aligned_cols=75  Identities=20%  Similarity=0.305  Sum_probs=52.7

Q ss_pred             ceEECCCCEECCCcEEe-------------ceEECCCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcE
Q 020813          245 RSVIGRHCRIGSNVKVV-------------NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCE  310 (321)
Q Consensus       245 ~svIg~~~~Ig~~~~I~-------------~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~  310 (321)
                      +..||+.|.+++++.|+             +-.|+++|.|+++|.+.-+.|+..+.+|.+++|. +|++-+.+.|.++++
T Consensus        54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tV  133 (184)
T KOG3121|consen   54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTV  133 (184)
T ss_pred             cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcc
Confidence            34666666666666664             3467888888888888777777777777777775 677777777777777


Q ss_pred             EcCCeEeee
Q 020813          311 YKGESLARK  319 (321)
Q Consensus       311 i~~~~~~~~  319 (321)
                      ++.++++..
T Consensus       134 lPpet~vpp  142 (184)
T KOG3121|consen  134 LPPETLVPP  142 (184)
T ss_pred             cCcccccCC
Confidence            777766543

>PLN02739 serine acetyltransferase

Probab=98.89  E-value=1.1e-08  Score=94.37  Aligned_cols=82  Identities=20%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcE---EeceEECCCCEECCCcEEe-ceEEC
Q 020813          210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVK---VVNSVVMNHVTIGDGCSIQ-GSVIC  283 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~---I~~siI~~~v~Ig~~~~I~-~~iI~  283 (321)
                      +..|+|.+.||+++.|..  +++||++|+||++|     .|.++|+||....   -.+.+|+++|.||.|+.|- ++.||
T Consensus       205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv-----~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IG  279 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRV-----SILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIG  279 (355)
T ss_pred             CcccCCCccccCceEEecCCceEECCCCEECCCC-----EEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEEC
Confidence            456777777777777643  45555555555544     3344444432110   0246788888888888885 78888


Q ss_pred             CCCEECcCcEecC
Q 020813          284 SNAQLQERVALKD  296 (321)
Q Consensus       284 ~~~~Ig~~~~i~~  296 (321)
                      +++.||+|++|..
T Consensus       280 d~aiIGAGSVV~k  292 (355)
T PLN02739        280 AGAMVAAGSLVLK  292 (355)
T ss_pred             CCCEECCCCEECC
Confidence            8888888887754

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=98.88  E-value=1.9e-08  Score=87.34  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=13.8

Q ss_pred             EECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          281 VICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      +||++|.||.++.|. ++.||++++|++|+.+.
T Consensus       133 ~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~  165 (203)
T PRK09527        133 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVT  165 (203)
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            444444444444332 34444444444444433

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=98.88  E-value=1.6e-09  Score=95.21  Aligned_cols=66  Identities=39%  Similarity=0.665  Sum_probs=58.1

Q ss_pred             ccCCCCCcccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHH
Q 020813           20 DKTKKPGRYNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL   85 (321)
Q Consensus        20 ~~~~~~~~~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl   85 (321)
                      .|++.++..+++++|.++..++|+.+.++.+..+.++++++++||++++++||+|+|||+|++|||
T Consensus       149 ~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         149 GKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             ccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence            344445556899999999999999998888888888999999999999999999999999999985

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01172 cysE serine O-acetyltransferase

Probab=98.88  E-value=1.7e-08  Score=84.77  Aligned_cols=35  Identities=9%  Similarity=0.109  Sum_probs=18.2

Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      .++|+++|.|++++.+. +++||++++|++++.+..
T Consensus       113 ~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~  148 (162)
T TIGR01172       113 HPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLK  148 (162)
T ss_pred             CCEECCCcEEcCCCEEECCcEECCCCEECCCCEECC
Confidence            34555555555555443 355555555555555443

Cysteine biosynthesis

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.87  E-value=1.7e-08  Score=78.63  Aligned_cols=86  Identities=23%  Similarity=0.382  Sum_probs=49.2

Q ss_pred             EECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece---EECCCCEECCCcEEeceEECCCCEECcCcEe-cCeEE
Q 020813          224 TVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS---VVMNHVTIGDGCSIQGSVICSNAQLQERVAL-KDCQV  299 (321)
Q Consensus       224 ~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s---iI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i-~~~iI  299 (321)
                      .|++++.|++++.|...   .++.||++|.|+++|.|.++   .++.++.+........++|++++.|+.++.+ .++.|
T Consensus         3 ~Ig~~~~I~~~~~i~~~---~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~i   79 (109)
T cd04647           3 SIGDNVYIGPGCVISAG---GGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTI   79 (109)
T ss_pred             EECCCcEECCCCEEecC---CceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEE
Confidence            34444444444444432   13577777777777777643   3333333333444456666666666666666 36666


Q ss_pred             CCCcEEcCCcEEc
Q 020813          300 GQGYVVSAGCEYK  312 (321)
Q Consensus       300 g~~~~V~~~~~i~  312 (321)
                      +++++|++++.+.
T Consensus        80 g~~~~i~~~~~v~   92 (109)
T cd04647          80 GDGAVVGAGSVVT   92 (109)
T ss_pred             CCCCEECCCCEEe
Confidence            6666666666655

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.84  E-value=4.2e-08  Score=76.59  Aligned_cols=16  Identities=19%  Similarity=0.270  Sum_probs=10.0

Q ss_pred             eEECCCCEECCCcEEe
Q 020813          246 SVIGRHCRIGSNVKVV  261 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~  261 (321)
                      ..||++|.|++++.|.
T Consensus        24 i~IG~~~~I~~~~~I~   39 (107)
T cd05825          24 VTIGSDACISQGAYLC   39 (107)
T ss_pred             eEECCCCEECCCeEee
Confidence            4666666666666653

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PRK10191 putative acyl transferase; Provisional

Probab=98.81  E-value=6e-08  Score=79.85  Aligned_cols=14  Identities=36%  Similarity=0.634  Sum_probs=5.5

Q ss_pred             EECCCCEECCCcEE
Q 020813          247 VIGRHCRIGSNVKV  260 (321)
Q Consensus       247 vIg~~~~Ig~~~~I  260 (321)
                      +||++|.||.++.+
T Consensus        94 ~IGd~~~Ig~~~~I  107 (146)
T PRK10191         94 HIGNGVELGANVII  107 (146)
T ss_pred             EECCCcEEcCCCEE
Confidence            33344444333333

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=98.80  E-value=2.6e-09  Score=96.37  Aligned_cols=109  Identities=18%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             cEEEecCCccEEEeeccccccccce-eecHHHHhhcCeeee-----------------cCCCccceEEeEeHHHHHHHHh
Q 020813           29 NIIGMDPTKQFLLHIATGAELEKDT-RIRKSILRAVGQMDI-----------------RADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        29 ~l~~lD~~~~~~~h~~~~a~~t~~l-~i~~~~~~~~~~~~~-----------------~s~l~d~giYi~~~~vl~~~l~   90 (321)
                      .++.+|+..++.+|.+++++++... +++.....+++.+.+                 .++++++|+|+|++++|+.+..
T Consensus       113 ~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~  192 (257)
T cd06428         113 VCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKK  192 (257)
T ss_pred             eecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhh
Confidence            4556777888888988888776422 222122233443332                 2568999999999999965542


Q ss_pred             cc------------------ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcccccc
Q 020813           91 QK------------------DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYA  152 (321)
Q Consensus        91 ~~------------------~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (321)
                      ..                  ..+.++..|++|.|++++                                          
T Consensus       193 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~------------------------------------------  230 (257)
T cd06428         193 AFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSG------------------------------------------  230 (257)
T ss_pred             hccccccccccccccccccccceeeehhhhhhHHhccC------------------------------------------
Confidence            11                  123445578888877643                                          


Q ss_pred             CCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          153 LGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       153 ~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                                   ++++|  +.++||.|+||+++|+++|+.+
T Consensus       231 -------------~v~~~--~~~g~w~dig~~~~~~~a~~~~  257 (257)
T cd06428         231 -------------KLYVY--KTDDFWSQIKTAGSAIYANRLY  257 (257)
T ss_pred             -------------CEEEe--cCCCeeecCCCHHHHHhHhhcC
Confidence                         46677  6689999999999999999753

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PLN02357 serine acetyltransferase

Probab=98.79  E-value=3.3e-08  Score=91.80  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=18.3

Q ss_pred             ceEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcC
Q 020813          279 GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~  313 (321)
                      .++||++|.||+|+.| .+.+||++++|++|+++..
T Consensus       278 ~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~  313 (360)
T PLN02357        278 HPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK  313 (360)
T ss_pred             CceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence            4555555555555544 3455555555555555443

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=98.78  E-value=7.9e-08  Score=82.32  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      ...|+++|.||.+|.|. ++.||+++.|++++++..
T Consensus       129 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~  164 (183)
T PRK10092        129 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK  164 (183)
T ss_pred             CeEECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence            34456666666666664 566666666666666553

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.76  E-value=6.5e-08  Score=81.84  Aligned_cols=26  Identities=15%  Similarity=0.339  Sum_probs=11.9

Q ss_pred             CCeeCCCcEECCCCEEC--CCCEECCCC
Q 020813          216 SAELGSKTTVGPHCMLG--EGSQMGDKC  241 (321)
Q Consensus       216 ~a~i~~~~~i~~~~~Ig--~~~~I~~~~  241 (321)
                      .+.|++++.|+.++.|.  .++.||+++
T Consensus        62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v   89 (169)
T cd03357          62 NIHIGDNFYANFNCTILDVAPVTIGDNV   89 (169)
T ss_pred             cCEECCCceEcCCEEEeccCcEEECCCC
Confidence            44455555555444443  234444443

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02739 serine acetyltransferase

Probab=98.76  E-value=3.6e-08  Score=90.97  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=8.6

Q ss_pred             CEECCCcEEe-ceEECCCCEEC
Q 020813          269 VTIGDGCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       269 v~Ig~~~~I~-~~iI~~~~~Ig  289 (321)
                      ++||++|.|+ +++|..+++||
T Consensus       258 p~IGd~V~IGagA~IlG~V~IG  279 (355)
T PLN02739        258 PKIGDGALLGACVTILGNISIG  279 (355)
T ss_pred             cEECCCCEEcCCCEEeCCeEEC
Confidence            3444444443 33333344444

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.75  E-value=4.9e-08  Score=82.56  Aligned_cols=77  Identities=26%  Similarity=0.332  Sum_probs=53.4

Q ss_pred             CeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEeceEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe
Q 020813          210 NNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~  278 (321)
                      +..|+|.|+||++..|..  +++||+-++           ||+||.|-.+++|+         +-.|+++|.||+||.|-
T Consensus        67 gieIhp~A~IG~g~fIdHg~GvVIgeta~-----------IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkIL  135 (194)
T COG1045          67 GIEIHPGAKIGRGLFIDHGTGVVIGETAV-----------IGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKIL  135 (194)
T ss_pred             ceeeCCCCeECCceEEcCCceEEEcceeE-----------ECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEE
Confidence            456788888777776643  234444444           44444444444443         45799999999999885


Q ss_pred             -ceEECCCCEECcCcEecCe
Q 020813          279 -GSVICSNAQLQERVALKDC  297 (321)
Q Consensus       279 -~~iI~~~~~Ig~~~~i~~~  297 (321)
                       +-.||+|+.||+|+++-..
T Consensus       136 G~I~IGd~akIGA~sVVlkd  155 (194)
T COG1045         136 GNIEIGDNAKIGAGSVVLKD  155 (194)
T ss_pred             cceEECCCCEECCCceEccC
Confidence             8889999999999988643

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.68  E-value=1.9e-07  Score=72.86  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=16.1

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      ..|+++|.||.++.|. ++.|++++.|++++.+.
T Consensus        57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~   90 (107)
T cd05825          57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV   90 (107)
T ss_pred             EEECCCCEECCCCEECCCCEECCCCEECCCCEEe
Confidence            3455555555555544 44455555555444443

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=98.68  E-value=1.2e-08  Score=90.60  Aligned_cols=105  Identities=15%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             EEEecCCccEEEeeccccccccceeecHHHHhhcCeeee-----------------cCCCccceEEeEeHHHHHHHHhcc
Q 020813           30 IIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI-----------------RADLMDAHMYAFNRSVLQEVLDQK   92 (321)
Q Consensus        30 l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~-----------------~s~l~d~giYi~~~~vl~~~l~~~   92 (321)
                      ++..|+.+++.+|.+++++.+..+. +.....+++.+.+                 .++++++|+|+|++++|+.+ .+ 
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l-~~-  188 (233)
T cd06425         112 ICDFPLAELLDFHKKHGAEGTILVT-KVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRI-PL-  188 (233)
T ss_pred             eeCCCHHHHHHHHHHcCCCEEEEEE-EcCCccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhc-cc-
Confidence            3345666777788888877664221 1111112222221                 25689999999999999654 32 


Q ss_pred             ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEe
Q 020813           93 DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA  172 (321)
Q Consensus        93 ~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~  172 (321)
                       ...++..|++|.|++++                                                       ++.+|  
T Consensus       189 -~~~~~~~~~~~~l~~~~-------------------------------------------------------~v~~~--  210 (233)
T cd06425         189 -RPTSIEKEIFPKMASEG-------------------------------------------------------QLYAY--  210 (233)
T ss_pred             -CcccchhhhHHHHHhcC-------------------------------------------------------CEEEE--
Confidence             34566789999987753                                                       46677  


Q ss_pred             cCccceeeccCHHHHHHHchhhc
Q 020813          173 SNSKYCVRLNSIQAFMDINRDVI  195 (321)
Q Consensus       173 ~~~~~w~~i~t~~~y~~~~~~~l  195 (321)
                      +.++||.|+||+++|+++++.+|
T Consensus       211 ~~~g~w~digt~~~~~~a~~~~l  233 (233)
T cd06425         211 ELPGFWMDIGQPKDFLKGMSLYL  233 (233)
T ss_pred             eeCCEEEcCCCHHHHHHHHHHhC
Confidence            45789999999999999988654

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=98.57  E-value=2.7e-08  Score=88.86  Aligned_cols=113  Identities=15%  Similarity=0.311  Sum_probs=80.6

Q ss_pred             ccEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec-----------------CCCccceEEeEeHHHHHHHH
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR-----------------ADLMDAHMYAFNRSVLQEVL   89 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~-----------------s~l~d~giYi~~~~vl~~~l   89 (321)
                      |.++..|+..++..|..++++.+.. ...+.+...+|+.+++.                 ++++++|+|+|++++|+.++
T Consensus       112 D~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~  191 (248)
T PF00483_consen  112 DIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLL  191 (248)
T ss_dssp             EEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHH
T ss_pred             cccccchhhhHHHhhhccccccccccccccccccccceeeeeccceeEEEEeccCcccccceeccCceEEEcchHHHHHh
Confidence            4677778888888999888855332 22233445566665442                 56899999999999998664


Q ss_pred             h---ccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcce
Q 020813           90 D---QKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHK  166 (321)
Q Consensus        90 ~---~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (321)
                      +   +.....++..|++|.+++++.                                                      .
T Consensus       192 ~~~~~~~~~~~~l~d~i~~~~~~~~------------------------------------------------------~  217 (248)
T PF00483_consen  192 EMIKENARGEDFLTDAIPKLLEQGK------------------------------------------------------K  217 (248)
T ss_dssp             HHHHTCTTSSHHHHHHHHHHHHTTC------------------------------------------------------E
T ss_pred             hhhhccchhhhHHHHHHHHHHHcCC------------------------------------------------------c
Confidence            3   334466677899999998762                                                      3


Q ss_pred             eEEEEecCcc--ceeeccCHHHHHHHchhhcc
Q 020813          167 CCVYIASNSK--YCVRLNSIQAFMDINRDVIG  196 (321)
Q Consensus       167 v~~~i~~~~~--~w~~i~t~~~y~~~~~~~l~  196 (321)
                      +.+|.  .++  +|.|+|++++|++|++.++.
T Consensus       218 ~~~~~--~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  218 VYAFI--FEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EEEEE--HSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             eEEEE--ecCCeEEEECCCHHHHHHHHHHHhc
Confidence            44553  345  89999999999999998764

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=98.57  E-value=4.4e-08  Score=88.32  Aligned_cols=107  Identities=14%  Similarity=0.244  Sum_probs=76.8

Q ss_pred             ccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeec--------------CCCccceEEeEeHHHHHHHHhccc
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIR--------------ADLMDAHMYAFNRSVLQEVLDQKD   93 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~--------------s~l~d~giYi~~~~vl~~~l~~~~   93 (321)
                      |.++.+|+..++..|.+++++++... ++  ...+++.+.+.              ++++++|+|+|++++|+ ++++  
T Consensus       127 D~i~~~dl~~~~~~h~~~~~d~tl~~-~~--~~~~yG~v~~d~~~V~~~~Ekp~~~~~~i~~Giyi~~~~il~-~l~~--  200 (254)
T TIGR02623       127 DGVADIDIKALIAFHRKHGKKATVTA-VQ--PPGRFGALDLEGEQVTSFQEKPLGDGGWINGGFFVLNPSVLD-LIDG--  200 (254)
T ss_pred             CeEecCCHHHHHHHHHHcCCCEEEEE-ec--CCCcccEEEECCCeEEEEEeCCCCCCCeEEEEEEEEcHHHHh-hccc--
Confidence            56777888888888988888876421 11  11233443331              36899999999999995 5543  


Q ss_pred             cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEec
Q 020813           94 KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIAS  173 (321)
Q Consensus        94 ~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~  173 (321)
                      ...++..|++|.|++++                                                       ++++|  .
T Consensus       201 ~~~~~~~d~i~~l~~~~-------------------------------------------------------~v~~~--~  223 (254)
T TIGR02623       201 DATVWEQEPLETLAQRG-------------------------------------------------------ELSAY--E  223 (254)
T ss_pred             cCchhhhhHHHHHHhCC-------------------------------------------------------CEEEE--e
Confidence            23467789999998764                                                       35667  4


Q ss_pred             CccceeeccCHHHHHHHchhhccc
Q 020813          174 NSKYCVRLNSIQAFMDINRDVIGE  197 (321)
Q Consensus       174 ~~~~w~~i~t~~~y~~~~~~~l~~  197 (321)
                      .++||.|+||+++|.+++..+-..
T Consensus       224 ~~g~w~dIgt~~~~~~~~~~~~~~  247 (254)
T TIGR02623       224 HSGFWQPMDTLRDKNYLEELWESG  247 (254)
T ss_pred             CCCEEecCCchHHHHHHHHHHHcC
Confidence            579999999999999998876543

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.52  E-value=5.6e-07  Score=76.20  Aligned_cols=32  Identities=13%  Similarity=0.250  Sum_probs=14.1

Q ss_pred             eEECCCCEECcCcEe-cCeEECCCcEEcCCcEE
Q 020813          280 SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i  311 (321)
                      -.|++++.||+|+.| .+-.||+++.|++|+++
T Consensus       120 PtIg~~V~IGagAkILG~I~IGd~akIGA~sVV  152 (194)
T COG1045         120 PTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV  152 (194)
T ss_pred             CccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence            344444444444432 23344444444444443

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.47  E-value=3.1e-07  Score=73.31  Aligned_cols=63  Identities=17%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCCcEEc
Q 020813          245 RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       245 ~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~  312 (321)
                      +-.||+++.|+++|.+....|+..|.+|.+|.|+ +|++-+-+.|-+     ++++.+.+.+++-+.+.
T Consensus        84 p~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild-----~tVlPpet~vppy~~~~  147 (184)
T KOG3121|consen   84 PVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILD-----DTVLPPETLVPPYSTIG  147 (184)
T ss_pred             eeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccC-----CcccCcccccCCceEEc
Confidence            4579999999999998888888888888777766 555555555543     44444444444444444

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.44  E-value=1.7e-06  Score=71.22  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=17.5

Q ss_pred             ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      +++|+++|.||.+|.|. ++.|++++.||++++|.
T Consensus        73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~  107 (145)
T cd03349          73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT  107 (145)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence            44555555555555553 45555555555544444

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>PRK10122 GalU regulator GalF; Provisional

Probab=98.39  E-value=1.8e-07  Score=86.28  Aligned_cols=68  Identities=13%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             CCCccceEEeEeHHHHHHHHhcccc--CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  147 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~--~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (321)
                      ++++++|+|+|++++|+.+......  ....-.|+++.+++++                                     
T Consensus       207 s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~-------------------------------------  249 (297)
T PRK10122        207 SDLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQ-------------------------------------  249 (297)
T ss_pred             ccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCC-------------------------------------
Confidence            5789999999999999765431110  1112247888887643                                     


Q ss_pred             cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                                        ++.+|  ..+++|.|+|++++|++++..+
T Consensus       250 ------------------~v~~~--~~~G~w~DiG~p~~~~~a~~~~  276 (297)
T PRK10122        250 ------------------SVDAM--LMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             ------------------CEEEE--EeCCEEEcCCCHHHHHHHHHHH
Confidence                              46677  4578999999999999999987

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=98.37  E-value=2.5e-07  Score=85.34  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             CCCccceEEeEeHHHHHHHHhccccCCCCc----cchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLK----QDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~----~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|+|+|++++|+.+ +... ..+.+    .|+++.|++++                                   
T Consensus       207 s~~~~~GiYi~~~~i~~~l-~~~~-~~~~ge~~ltd~i~~l~~~~-----------------------------------  249 (297)
T TIGR01105       207 SDLMAVGRYVLSADIWAEL-ERTE-PGAWGRIQLTDAIAELAKKQ-----------------------------------  249 (297)
T ss_pred             cCEEEEEEEEECHHHHHHH-hcCC-CCCCCeeeHHHHHHHHHhcC-----------------------------------
Confidence            5799999999999999744 4311 11112    38888887753                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                                          ++++|.  .+++|.|+|++++|+++|.++
T Consensus       250 --------------------~v~~~~--~~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       250 --------------------SVDAML--MTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             --------------------CEEEEE--eccEEECCCCHHHHHHHHHHH
Confidence                                466774  478999999999999998876

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=98.34  E-value=3.1e-07  Score=81.61  Aligned_cols=156  Identities=12%  Similarity=0.111  Sum_probs=89.4

Q ss_pred             cEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhc
Q 020813           29 NIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQ   91 (321)
Q Consensus        29 ~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~   91 (321)
                      +++--++++.+..+.+.+++.+. ..++  +..++||.+++.                |||+-+|+|+|++.|++ +++.
T Consensus       109 Ni~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~-~~~~  185 (286)
T COG1209         109 NIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFE-AIKQ  185 (286)
T ss_pred             ceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEcCCCcEEEeEECCCCCCCceeEEEEEEeChHHHH-HHHc
Confidence            33333666665555554454443 2223  245677777764                88999999999999996 5442


Q ss_pred             ---cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeE
Q 020813           92 ---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCC  168 (321)
Q Consensus        92 ---~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  168 (321)
                         ....+-=-.|.+.+++.+|.                                                      .+.
T Consensus       186 ikPS~RGElEITd~i~~~i~~G~------------------------------------------------------~~~  211 (286)
T COG1209         186 IKPSARGELEITDAIDLYIEKGY------------------------------------------------------LVV  211 (286)
T ss_pred             CCCCCCCceEehHHHHHHHHcCc------------------------------------------------------EEE
Confidence               11122223466788877762                                                      122


Q ss_pred             EEEecCccceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEE
Q 020813          169 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVI  248 (321)
Q Consensus       169 ~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svI  248 (321)
                      ..  ..+++|.|.||++++++|++.++..... .+      ...+.|.+      .+. ++.|...++++..+.|++|-+
T Consensus       212 ~~--~~~G~WlDtGt~~slleA~~~i~~~~~~-~G------~~~~~~~~------~~~-~~~i~~~~~~~~~~~l~~~~~  275 (286)
T COG1209         212 AI--LIRGWWLDTGTPESLLEANNFVRTVSKR-QG------FKIACPEE------IAW-NGWIDGPGLIGLASQLEKSGY  275 (286)
T ss_pred             EE--EccceEEecCChhhHHHHHHHHHHHHhh-cC------CEEeChhH------EEE-ecEEechHhhccccchhhcCc
Confidence            22  3456999999999999999988652211 11      12223332      222 344444444555555555566


Q ss_pred             CCCCEECCC
Q 020813          249 GRHCRIGSN  257 (321)
Q Consensus       249 g~~~~Ig~~  257 (321)
                      |+...++.+
T Consensus       276 G~y~~~~~~  284 (286)
T COG1209         276 GQYLLELLR  284 (286)
T ss_pred             chhhhhhhc
Confidence            665555443

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.33  E-value=5e-06  Score=68.51  Aligned_cols=34  Identities=18%  Similarity=0.375  Sum_probs=18.0

Q ss_pred             ceEECCCCEECcCcEe-cCeEECCCcEEcCCcEEc
Q 020813          279 GSVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~  312 (321)
                      .++|+++|.||.++.+ .++.||++++|++++.+.
T Consensus        73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~  107 (145)
T cd03349          73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT  107 (145)
T ss_pred             CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence            4555555555555554 245555555555555543

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=98.30  E-value=5.5e-07  Score=79.17  Aligned_cols=62  Identities=32%  Similarity=0.520  Sum_probs=49.1

Q ss_pred             CCCcccEEEecCCc--cEEEeeccccccccceeecHHHHhhcCeeeecCCCccceEEeEeHHHH
Q 020813           24 KPGRYNIIGMDPTK--QFLLHIATGAELEKDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL   85 (321)
Q Consensus        24 ~~~~~~l~~lD~~~--~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl   85 (321)
                      +.++..++++|.++  .+.+|.+...+....+.++++++++||++.+++||+|+|||||++|||
T Consensus       153 ~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         153 KTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             cCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence            33455899999987  566666554443344557999999999999999999999999999985

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.28  E-value=4e-06  Score=85.81  Aligned_cols=44  Identities=20%  Similarity=0.419  Sum_probs=24.9

Q ss_pred             eEECCCCEECCCcEEec------eEECCCCEECCCcEEe-ceEECCCCEEC
Q 020813          246 SVIGRHCRIGSNVKVVN------SVVMNHVTIGDGCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig  289 (321)
                      +.||++|.|+++|.|..      ....++++||++|.|+ +|+|.++++||
T Consensus       617 v~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IG  667 (695)
T TIGR02353       617 VTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMG  667 (695)
T ss_pred             eEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEEC
Confidence            36666666666666642      2234455555555555 55555555555

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=98.24  E-value=7.3e-07  Score=82.45  Aligned_cols=67  Identities=10%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc---ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~---~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      ++++++|+|+|++++|+ +++..   ...+..-.|+++.+++++                                    
T Consensus       210 s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~------------------------------------  252 (302)
T PRK13389        210 SNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE------------------------------------  252 (302)
T ss_pred             ccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcC------------------------------------
Confidence            57899999999999995 55431   112233358888887742                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                                         ++.+|  ..++||.|+|++++|++++..+
T Consensus       253 -------------------~v~~~--~~~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        253 -------------------TVEAY--HMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             -------------------CEEEE--EeeeEEEeCCCHHHHHHHHHHH
Confidence                               35677  4479999999999999998886

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.22  E-value=2.5e-06  Score=73.36  Aligned_cols=75  Identities=24%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe-ce
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GS  280 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~-~~  280 (321)
                      ..|||.|+||.+..+...    -+++||+-+     +||.+|.|..++.++         +-.|++||-||.++.|- +.
T Consensus       149 vdihpaa~ig~gilldha----tgvvigeTA-----vvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV  219 (269)
T KOG4750|consen  149 VDIHPAAKIGKGILLDHA----TGVVIGETA-----VVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNV  219 (269)
T ss_pred             ccccchhhcccceeeccc----cceeeccee-----EeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCe
Confidence            456777777776655321    133444433     444444444444443         33566666666665543 56


Q ss_pred             EECCCCEECcCcEe
Q 020813          281 VICSNAQLQERVAL  294 (321)
Q Consensus       281 iI~~~~~Ig~~~~i  294 (321)
                      .||.|++|++|+++
T Consensus       220 ~IGegavIaAGsvV  233 (269)
T KOG4750|consen  220 TIGEGAVIAAGSVV  233 (269)
T ss_pred             eECCCcEEeccceE
Confidence            66666666666544

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=98.22  E-value=9e-07  Score=80.20  Aligned_cols=69  Identities=9%  Similarity=0.106  Sum_probs=48.9

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc--cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD--KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  147 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~--~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (321)
                      ++++++|+|+|++++|..+.....  .....-.|+++.+++++                                     
T Consensus       195 ~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~-------------------------------------  237 (267)
T cd02541         195 SNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE-------------------------------------  237 (267)
T ss_pred             CceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC-------------------------------------
Confidence            468899999999999975533111  11122236777777643                                     


Q ss_pred             cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhc
Q 020813          148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI  195 (321)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l  195 (321)
                                        ++++|  +.++||.|+||+++|+++|+++.
T Consensus       238 ------------------~v~~~--~~~g~w~digt~~~y~~a~~~~~  265 (267)
T cd02541         238 ------------------PVYAY--VFEGKRYDCGNKLGYLKATVEFA  265 (267)
T ss_pred             ------------------CEEEE--EeeeEEEeCCCHHHHHHHHHHHh
Confidence                              45677  44689999999999999999863

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.20  E-value=5.9e-06  Score=84.60  Aligned_cols=15  Identities=20%  Similarity=0.321  Sum_probs=7.8

Q ss_pred             EECCCCEECCCcEEe
Q 020813          247 VIGRHCRIGSNVKVV  261 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~  261 (321)
                      .||+||.|+++|.+.
T Consensus       133 ~IG~~~~I~~~v~l~  147 (695)
T TIGR02353       133 TIGAGTIVRKEVMLL  147 (695)
T ss_pred             EECCCCEECCCCEEE
Confidence            455555555555544

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=98.20  E-value=1.7e-06  Score=77.06  Aligned_cols=69  Identities=12%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc---ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~---~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      ++++++|+|+|++++|+ ++++.   ......-.|+++.+++++                                    
T Consensus       166 ~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~~~~l~~~g------------------------------------  208 (240)
T cd02538         166 SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEITDVNNEYLEKG------------------------------------  208 (240)
T ss_pred             CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhHHHHHHHHHhC------------------------------------
Confidence            46889999999999996 44421   111112248888887764                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                                         ++.++..+..+||.||||+++|+++++.+
T Consensus       209 -------------------~~~~~~~~~~g~w~digt~~~~~~a~~~~  237 (240)
T cd02538         209 -------------------KLSVELLGRGFAWLDTGTHESLLEASNFV  237 (240)
T ss_pred             -------------------CeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence                               12344334459999999999999998864

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=98.20  E-value=1e-06  Score=79.41  Aligned_cols=64  Identities=11%  Similarity=0.108  Sum_probs=45.1

Q ss_pred             CCCccceEEeEeHHHHHHHHhcccc--CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDK--FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSF  147 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~--~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (321)
                      ++++++|+|+|++++|..+......  ....-.|+++.+++++                                     
T Consensus       195 ~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~-------------------------------------  237 (260)
T TIGR01099       195 SNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE-------------------------------------  237 (260)
T ss_pred             CceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC-------------------------------------
Confidence            4688999999999999766432211  1112236777777642                                     


Q ss_pred             cccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHH
Q 020813          148 HELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI  190 (321)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~  190 (321)
                                        ++++|  +.++||.|||++++|+++
T Consensus       238 ------------------~v~~~--~~~g~w~digs~~~y~~a  260 (260)
T TIGR01099       238 ------------------TVYAY--KFKGKRYDCGSKLGYLKA  260 (260)
T ss_pred             ------------------CEEEE--EcceEEEeCCCHHHHhhC
Confidence                              46677  457999999999999874

Built to distinquish between the highly similar genes galU and galF

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.17  E-value=2.1e-06  Score=69.16  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=36.2

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEec
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN  262 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~  262 (321)
                      ..|.|+|.+-..+.|.+++.|+++|++...+.+.    .-+||+|+.|++.+.|.|
T Consensus         9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n   64 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN   64 (190)
T ss_pred             eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence            4456777666666666677777777777666553    468888888888887764

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=98.11  E-value=2.6e-06  Score=76.68  Aligned_cols=106  Identities=8%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             ccEEEecCCccEEEeeccccccccceeecHHHHhhcCeeee---------------cCCCccceEEeEeHHHHHHHHhcc
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDI---------------RADLMDAHMYAFNRSVLQEVLDQK   92 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~---------------~s~l~d~giYi~~~~vl~~~l~~~   92 (321)
                      |.++..|+..++..|...+++++.... .  ....++.+++               .++++++|+|+|++++++.+ .+.
T Consensus       127 D~i~~~dl~~ll~~h~~~~~~~tl~~~-~--~~~~~g~v~~d~~g~V~~~~ekp~~~~~~i~~Giyi~~~~l~~~l-~~~  202 (253)
T cd02524         127 DGVSDVNINALIEFHRSHGKLATVTAV-H--PPGRFGELDLDDDGQVTSFTEKPQGDGGWINGGFFVLEPEVFDYI-DGD  202 (253)
T ss_pred             CEEECCCHHHHHHHHHHcCCCEEEEEe-c--CCCcccEEEECCCCCEEEEEECCCCCCceEEEEEEEECHHHHHhh-ccc
Confidence            456677887777788887777764211 1  1122222222               23589999999999999644 322


Q ss_pred             ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCcceeEEEEe
Q 020813           93 DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKCCVYIA  172 (321)
Q Consensus        93 ~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~  172 (321)
                        ..++..|+++.|++++                                                       ++++|  
T Consensus       203 --~~~~~~d~l~~li~~~-------------------------------------------------------~v~~~--  223 (253)
T cd02524         203 --DTVFEREPLERLAKDG-------------------------------------------------------ELMAY--  223 (253)
T ss_pred             --cchhhHHHHHHHHhcC-------------------------------------------------------CEEEE--
Confidence              3345578888888754                                                       34566  


Q ss_pred             cCccceeeccCHHHHHHHchhhcc
Q 020813          173 SNSKYCVRLNSIQAFMDINRDVIG  196 (321)
Q Consensus       173 ~~~~~w~~i~t~~~y~~~~~~~l~  196 (321)
                      +.++||.+|+|+++|.++...+..
T Consensus       224 ~~~g~w~~I~t~~~~~~~~~~~~~  247 (253)
T cd02524         224 KHTGFWQCMDTLRDKQTLEELWNS  247 (253)
T ss_pred             ecCCEEEeCcCHHHHHHHHHHHHc
Confidence            457899999999999999866643

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.05  E-value=3.4e-05  Score=66.17  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=17.0

Q ss_pred             CcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813          222 KTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       222 ~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~  261 (321)
                      ...+|.++.++.++.+-.   ..+.+||.++.+++++.|.
T Consensus        67 ~~~iG~~~~i~~~~~~~~---~~~i~ig~~~~i~~~v~i~  103 (190)
T COG0110          67 NLTIGDLCFIGVNVVILV---GEGITIGDNVVVGPNVTIY  103 (190)
T ss_pred             ceEECCeeEEcCCcEEEe---cCCeEECCCceECCCcEEe
Confidence            334444444444444311   1123456666666665554

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=98.03  E-value=2.7e-06  Score=74.78  Aligned_cols=78  Identities=12%  Similarity=0.051  Sum_probs=44.6

Q ss_pred             ccEEEecCCccEEEee--ccccccccceeecHHHHhhcCeeeec-------------CCCccceEEeEeHHHHHHHHhcc
Q 020813           28 YNIIGMDPTKQFLLHI--ATGAELEKDTRIRKSILRAVGQMDIR-------------ADLMDAHMYAFNRSVLQEVLDQK   92 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~--~~~a~~t~~l~i~~~~~~~~~~~~~~-------------s~l~d~giYi~~~~vl~~~l~~~   92 (321)
                      |.++..|+..++..|.  ..++.++... .+......++.+++.             ++++++|+|+|++++|..+.+. 
T Consensus       106 D~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~v~~d~~~~v~~~~~~~~~~~~~~Giyi~~~~~l~~l~~~-  183 (221)
T cd06422         106 DILWDGDLAPLLLLHAWRMDALLLLLPL-VRNPGHNGVGDFSLDADGRLRRGGGGAVAPFTFTGIQILSPELFAGIPPG-  183 (221)
T ss_pred             CeeeCCCHHHHHHHHHhccCCCceEEEE-EEcCCCCCcceEEECCCCcEeecccCCCCceEEEEEEEEcHHHHhhCCcC-
Confidence            3566667777777776  3444333211 111112233444332             3578999999999999755432 


Q ss_pred             ccCCCCccchhHHHHHhh
Q 020813           93 DKFQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        93 ~~~~si~~dlip~l~~~~  110 (321)
                        . ..-.|+++.|++++
T Consensus       184 --~-~~~~d~~~~l~~~~  198 (221)
T cd06422         184 --K-FSLNPLWDRAIAAG  198 (221)
T ss_pred             --c-ccHHHHHHHHHHcC
Confidence              1 22358888887653

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=98.01  E-value=6.5e-06  Score=75.55  Aligned_cols=77  Identities=10%  Similarity=0.113  Sum_probs=46.9

Q ss_pred             EEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhcc-
Q 020813           31 IGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQK-   92 (321)
Q Consensus        31 ~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~~-   92 (321)
                      +..|+.+++..|.+.+++.+. ..+++  ...+|+.+++.                ++++++|+|+|++.+++ ++++- 
T Consensus       111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~-~l~~~~  187 (286)
T TIGR01207       111 YGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVVE-IARQLK  187 (286)
T ss_pred             cccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECCCCeEEEEEECCCCCCCCEEEEEEEEEchHHHH-HHhhcC
Confidence            455666677777766666654 22222  23456666553                57899999999999986 44321 


Q ss_pred             --ccCCCCccchhHHHHHhh
Q 020813           93 --DKFQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        93 --~~~~si~~dlip~l~~~~  110 (321)
                        ...+-.-.|+++.+++++
T Consensus       188 ~~~~ge~eitdv~~~~l~~g  207 (286)
T TIGR01207       188 PSARGELEITDLNRVYLEEG  207 (286)
T ss_pred             CCCCCcEeHHHHHHHHHHcC
Confidence              111112248888887764

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=97.94  E-value=9.8e-06  Score=74.59  Aligned_cols=76  Identities=9%  Similarity=0.119  Sum_probs=47.9

Q ss_pred             EEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhc--
Q 020813           31 IGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQ--   91 (321)
Q Consensus        31 ~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~--   91 (321)
                      ++.|+..++..|..++++.+.. ..+  ....+|+.+++.                ++++++|+|+|++++++. +++  
T Consensus       115 ~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~-~~~~~  191 (292)
T PRK15480        115 YGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEM-AKNLK  191 (292)
T ss_pred             eccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEECCCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHH-HhhcC
Confidence            4677777888887766666642 222  123355555442                678999999999999964 432  


Q ss_pred             -c-ccCCCCccchhHHHHHhh
Q 020813           92 -K-DKFQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        92 -~-~~~~si~~dlip~l~~~~  110 (321)
                       . ....++ .|+++.+++++
T Consensus       192 ~~~~ge~~i-td~~~~~l~~g  211 (292)
T PRK15480        192 PSARGELEI-TDINRIYMEQG  211 (292)
T ss_pred             CCCCCeeEh-HHHHHHHHhcC
Confidence             1 111234 47888887765

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.94  E-value=9e-06  Score=65.58  Aligned_cols=88  Identities=14%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             ccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec--------------eEECCCCEECCCcEEeceEECCCCE
Q 020813          205 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR--------------SVIGRHCRIGSNVKVVNSVVMNHVT  270 (321)
Q Consensus       205 ~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~--------------svIg~~~~Ig~~~~I~~siI~~~v~  270 (321)
                      ..+.+...+||.|.+-..+   ++.+||+|+.|++.+.|.+              -+||.+-...-+|...--.++++-+
T Consensus        27 vti~~gcVvHP~a~~iA~a---GPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NV  103 (190)
T KOG4042|consen   27 VTIKEGCVVHPFAVFIATA---GPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNV  103 (190)
T ss_pred             eEecCCcEecceEEEEccc---CCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcce
Confidence            3455667778887775443   4556777777766665543              3677777666666665556666666


Q ss_pred             ECCCcEEe-ceEECCCCEECcCcEec
Q 020813          271 IGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       271 Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      |+..|.++ ++++.++|.||++|.+.
T Consensus       104 ieskayvg~gv~vssgC~vGA~c~v~  129 (190)
T KOG4042|consen  104 IESKAYVGDGVSVSSGCSVGAKCTVF  129 (190)
T ss_pred             EeeeeEecCCcEEcCCceeccceEEe
Confidence            66666665 56666666666555554

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.93  E-value=4.2e-05  Score=66.20  Aligned_cols=83  Identities=18%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             CCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC-eEECCCcEEcCCc
Q 020813          232 GEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD-CQVGQGYVVSAGC  309 (321)
Q Consensus       232 g~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~-~iIg~~~~V~~~~  309 (321)
                      ...+.||.++.++-.++|+.+.+|+++.|...++..++.|+.+|.+. |.+..+++.||+++.|.+ -++...-.+++++
T Consensus        20 ~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV   99 (277)
T COG4801          20 KGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADV   99 (277)
T ss_pred             eccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccce
Confidence            33444555556666688888888888888888888888888888887 777777888888887764 3444445555555


Q ss_pred             EEcCC
Q 020813          310 EYKGE  314 (321)
Q Consensus       310 ~i~~~  314 (321)
                      .|++.
T Consensus       100 ~Iegg  104 (277)
T COG4801         100 IIEGG  104 (277)
T ss_pred             EEecC
Confidence            55553

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=97.83  E-value=1.5e-05  Score=70.65  Aligned_cols=70  Identities=13%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc---cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~---~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      ++++++|+|+|++++++.+.....   ...++ .|+++.+++++                                    
T Consensus       163 ~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~~~~i~~g------------------------------------  205 (236)
T cd04189         163 SNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAIQWLIDRG------------------------------------  205 (236)
T ss_pred             CCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHHHHHHHcC------------------------------------
Confidence            568899999999999975422111   11122 47888887654                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcc
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  196 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~  196 (321)
                                        .++.+|  +.++||.+++|+++|.++++.++.
T Consensus       206 ------------------~~v~~~--~~~~~~~~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         206 ------------------RRVGYS--IVTGWWKDTGTPEDLLEANRLLLD  235 (236)
T ss_pred             ------------------CcEEEE--EcCceEEeCCCHHHHHHHHHHHHh
Confidence                              245666  457899999999999999998764

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=97.78  E-value=2.3e-05  Score=68.84  Aligned_cols=58  Identities=24%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             ccEEEecCCc-cEEEeeccccccc-cceeecHHHHhhcCeeeecCCCccceEEeEeHHHH
Q 020813           28 YNIIGMDPTK-QFLLHIATGAELE-KDTRIRKSILRAVGQMDIRADLMDAHMYAFNRSVL   85 (321)
Q Consensus        28 ~~l~~lD~~~-~~~~h~~~~a~~t-~~l~i~~~~~~~~~~~~~~s~l~d~giYi~~~~vl   85 (321)
                      +.++.+|.++ .++.+.+....-. ..++++++++.+|+.+.+++||+|+|||+|+++||
T Consensus       158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence            3578888763 4444333322222 24678999999999999999999999999999985

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=97.70  E-value=0.0003  Score=60.21  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=18.3

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      ++|+++|-||.++.|. +.+||+++.||+++++.+
T Consensus       125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk  159 (190)
T COG0110         125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK  159 (190)
T ss_pred             eEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence            4555555555555554 455555555555555543

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.56  E-value=0.00032  Score=60.86  Aligned_cols=95  Identities=20%  Similarity=0.355  Sum_probs=74.5

Q ss_pred             eCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECc
Q 020813          213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQE  290 (321)
Q Consensus       213 i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~  290 (321)
                      ...++.||+++.+. ..++++...+|+++.|...+++.+|+|+..|++. |.+..++.+||+++.|+ .-++..+-.||+
T Consensus        19 v~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~   97 (277)
T COG4801          19 VKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGA   97 (277)
T ss_pred             EeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccccc
Confidence            34445555555552 3356777888888888888999999999999997 77788999999999998 677888899999


Q ss_pred             CcEecCeEECCCcEEcCC
Q 020813          291 RVALKDCQVGQGYVVSAG  308 (321)
Q Consensus       291 ~~~i~~~iIg~~~~V~~~  308 (321)
                      ++.|++..+..+-++-++
T Consensus        98 dV~Ieggfva~g~Ivirn  115 (277)
T COG4801          98 DVIIEGGFVAKGWIVIRN  115 (277)
T ss_pred             ceEEecCeeecceEEEcC
Confidence            999988888777655443

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=97.51  E-value=5.6e-05  Score=65.80  Aligned_cols=79  Identities=16%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             cEEEecCCccEEEeeccccccccceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHhcc
Q 020813           29 NIIGMDPTKQFLLHIATGAELEKDTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLDQK   92 (321)
Q Consensus        29 ~l~~lD~~~~~~~h~~~~a~~t~~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~~~   92 (321)
                      .++..|+.+++..|.+++++.+.... +.....+++.+.+.                ++++++|+|+|++++++ ++++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~-~l~~~  183 (217)
T cd04181         106 VLTDLDLSELLRFHREKGADATIAVK-EVEDPSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILD-YIPEI  183 (217)
T ss_pred             eecCcCHHHHHHHHHhcCCCEEEEEE-EcCCCCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEEEECHHHHH-hhhhc
Confidence            45556666666667777766554221 11111222222221                37899999999999995 55432


Q ss_pred             c-cCCCCccchhHHHHHh
Q 020813           93 D-KFQSLKQDVLPYLVRS  109 (321)
Q Consensus        93 ~-~~~si~~dlip~l~~~  109 (321)
                      . ...++-.|+++.++++
T Consensus       184 ~~~~~~~~~~~~~~l~~~  201 (217)
T cd04181         184 LPRGEDELTDAIPLLIEE  201 (217)
T ss_pred             CCcccccHHHHHHHHHhc
Confidence            2 2355667888888764

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=97.44  E-value=0.00021  Score=62.50  Aligned_cols=63  Identities=19%  Similarity=0.415  Sum_probs=46.5

Q ss_pred             CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE  149 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (321)
                      ++++++|+|+|++.+++.+ .+. ...++ .++++.+++++                                       
T Consensus       158 ~~~~~~Giy~~~~~~~~~i-~~~-~~~~l-~~~~~~~i~~~---------------------------------------  195 (220)
T cd06426         158 SFLVNAGIYVLEPEVLDLI-PKN-EFFDM-PDLIEKLIKEG---------------------------------------  195 (220)
T ss_pred             CCeEEEEEEEEcHHHHhhc-CCC-CCcCH-HHHHHHHHHCC---------------------------------------
Confidence            5688999999999999644 432 22333 47888887764                                       


Q ss_pred             cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHc
Q 020813          150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDIN  191 (321)
Q Consensus       150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~  191 (321)
                                     .++.+|  +.+++|.++||+++|+++|
T Consensus       196 ---------------~~i~~~--~~~~~w~~igt~~dl~~a~  220 (220)
T cd06426         196 ---------------KKVGVF--PIHEYWLDIGRPEDYEKAN  220 (220)
T ss_pred             ---------------CcEEEE--EeCCeEEeCCCHHHHHhhC
Confidence                           245666  4568999999999999885

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=97.43  E-value=0.00022  Score=62.27  Aligned_cols=61  Identities=21%  Similarity=0.397  Sum_probs=46.2

Q ss_pred             CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE  149 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (321)
                      +.++++|+|+|++++|+.+...   ..++..|+++.+++++                                       
T Consensus       162 ~~~~~~Giy~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~---------------------------------------  199 (223)
T cd06915         162 PGLINGGVYLLRKEILAEIPAD---AFSLEADVLPALVKRG---------------------------------------  199 (223)
T ss_pred             CCcEEEEEEEECHHHHhhCCcc---CCChHHHHHHHHHhcC---------------------------------------
Confidence            5689999999999999754322   2345668888887653                                       


Q ss_pred             cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHH
Q 020813          150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDI  190 (321)
Q Consensus       150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~  190 (321)
                                      ++.+|.  .+++|.+|+++++|.++
T Consensus       200 ----------------~v~~~~--~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         200 ----------------RLYGFE--VDGYFIDIGIPEDYARA  222 (223)
T ss_pred             ----------------cEEEEe--cCCeEEecCCHHHHHhh
Confidence                            356663  46899999999999987

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=97.40  E-value=7.6e-05  Score=64.63  Aligned_cols=37  Identities=22%  Similarity=0.584  Sum_probs=28.1

Q ss_pred             ccceEEeEeHHHHHHHHhcc--ccCCCCccchhHHHHHh
Q 020813           73 MDAHMYAFNRSVLQEVLDQK--DKFQSLKQDVLPYLVRS  109 (321)
Q Consensus        73 ~d~giYi~~~~vl~~~l~~~--~~~~si~~dlip~l~~~  109 (321)
                      +++|+|+|++++|..+++..  ....++..|++|.|+++
T Consensus       147 ~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~  185 (200)
T cd02508         147 ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK  185 (200)
T ss_pred             hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc
Confidence            99999999999987666531  22456677999988765

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.38  E-value=0.00028  Score=42.92  Aligned_cols=10  Identities=50%  Similarity=1.009  Sum_probs=2.6

Q ss_pred             CCCCEECCCc
Q 020813          249 GRHCRIGSNV  258 (321)
Q Consensus       249 g~~~~Ig~~~  258 (321)
                      |++|.||.++
T Consensus         5 G~~~~ig~~~   14 (34)
T PF14602_consen    5 GDNCFIGANS   14 (34)
T ss_dssp             -TTEEE-TT-
T ss_pred             CCCEEECccc
Confidence            3333333333

...

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.11  E-value=0.00061  Score=41.44  Aligned_cols=13  Identities=38%  Similarity=0.521  Sum_probs=4.9

Q ss_pred             EECCCCEECCCcE
Q 020813          247 VIGRHCRIGSNVK  259 (321)
Q Consensus       247 vIg~~~~Ig~~~~  259 (321)
                      .||++|.|++|+.
T Consensus        19 ~igd~~~i~~g~~   31 (34)
T PF14602_consen   19 TIGDGVIIGAGVV   31 (34)
T ss_dssp             EE-TTEEE-TTEE
T ss_pred             EEcCCCEECCCCE
Confidence            4444444444443

...

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=97.10  E-value=0.00091  Score=57.90  Aligned_cols=77  Identities=25%  Similarity=0.459  Sum_probs=45.2

Q ss_pred             ECCCCEECCCCeEec---eEECCCCEECCCcEEeceEECCCCEECC---CcEEeceEECCCCEECcCcEe-cCeEECCCc
Q 020813          231 LGEGSQMGDKCSVKR---SVIGRHCRIGSNVKVVNSVVMNHVTIGD---GCSIQGSVICSNAQLQERVAL-KDCQVGQGY  303 (321)
Q Consensus       231 Ig~~~~I~~~~~I~~---svIg~~~~Ig~~~~I~~siI~~~v~Ig~---~~~I~~~iI~~~~~Ig~~~~i-~~~iIg~~~  303 (321)
                      |.+.+.||+|-.+.+   .+||+-++||++++|     +.++++|.   ++--+.-.|++|+.||+|+.| .+..||+|+
T Consensus       151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGega  225 (269)
T KOG4750|consen  151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGA  225 (269)
T ss_pred             ccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCc
Confidence            445555555544443   366666666666644     44444432   122224577788888877744 567777777


Q ss_pred             EEcCCcEEc
Q 020813          304 VVSAGCEYK  312 (321)
Q Consensus       304 ~V~~~~~i~  312 (321)
                      +|++|+++-
T Consensus       226 vIaAGsvV~  234 (269)
T KOG4750|consen  226 VIAAGSVVL  234 (269)
T ss_pred             EEeccceEE
Confidence            777777653

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=97.01  E-value=0.0016  Score=57.95  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             CCCccceEEeEeHHHHHHHHh
Q 020813           70 ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~   90 (321)
                      +++.++|||+|++++|+.++.
T Consensus       174 ~~~~~~Giy~~~~~~l~~~~~  194 (245)
T PRK05450        174 PVYRHIGIYAYRRGFLRRFVS  194 (245)
T ss_pred             cccEEEEEEecCHHHHHHHHh
Confidence            589999999999999987654

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=96.72  E-value=0.0028  Score=56.18  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=18.1

Q ss_pred             CCCccceEEeEeHHHHHHHHh
Q 020813           70 ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~   90 (321)
                      ++++++|||+|++++|+.+..
T Consensus       171 ~~~~~~Giy~~~~~~~~~~~~  191 (239)
T cd02517         171 PYYKHIGIYAYRRDFLLRFAA  191 (239)
T ss_pred             ceeEEEEEEEECHHHHHHHHh
Confidence            578999999999999986654

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=96.67  E-value=0.0017  Score=57.26  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=25.5

Q ss_pred             CCCccceEEeEeHH-HHHHHHhc----cc-c-CCCCccchhHHHHHhh
Q 020813           70 ADLMDAHMYAFNRS-VLQEVLDQ----KD-K-FQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        70 s~l~d~giYi~~~~-vl~~~l~~----~~-~-~~si~~dlip~l~~~~  110 (321)
                      ++++++|+|+|+++ ++..++++    .. . ....-.|+++.+++++
T Consensus       161 ~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g  208 (231)
T cd04183         161 SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDG  208 (231)
T ss_pred             CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcC
Confidence            67899999999997 55444432    11 1 1112357888887765

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=96.66  E-value=0.0037  Score=55.03  Aligned_cols=39  Identities=10%  Similarity=0.088  Sum_probs=24.9

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc------ccCCCCccchhHHHHH
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK------DKFQSLKQDVLPYLVR  108 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~------~~~~si~~dlip~l~~  108 (321)
                      .+++++|+|+|++++++.+.+.-      ......-.|+++.++.
T Consensus       158 ~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~  202 (229)
T cd02523         158 IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLIS  202 (229)
T ss_pred             hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHh
Confidence            45789999999999987553310      0123334466776665

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=96.61  E-value=0.0027  Score=56.23  Aligned_cols=25  Identities=4%  Similarity=0.046  Sum_probs=20.1

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHch
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINR  192 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~  192 (321)
                      ++.+|.  .+++|.||+++++|..++.
T Consensus       212 ~v~~~~--~~~~~~DI~t~~Dl~~a~~  236 (238)
T PRK13368        212 KIRMVE--VAATSIGVDTPEDLERVRA  236 (238)
T ss_pred             ceEEEE--eCCCCCCCCCHHHHHHHHH
Confidence            455663  5789999999999998865

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=96.36  E-value=0.0085  Score=57.89  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=38.1

Q ss_pred             EECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECC
Q 020813          236 QMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICS  284 (321)
Q Consensus       236 ~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~  284 (321)
                      .+.+++.|.+|++..++.+|+++.|++|.|..++.||++|.|.++-+..
T Consensus       275 ~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~  323 (414)
T PF07959_consen  275 DSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS  323 (414)
T ss_pred             ccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence            4456667778888888888888888888888888888888887764443

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=96.12  E-value=0.014  Score=56.39  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=25.8

Q ss_pred             CCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEE
Q 020813          228 HCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVV  265 (321)
Q Consensus       228 ~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI  265 (321)
                      ++++..++.+++++.|.+|.|+.++.||++|.|.++-+
T Consensus       284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~  321 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDI  321 (414)
T ss_pred             EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcc
Confidence            66666667777777777777777777777776665533

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=95.40  E-value=0.089  Score=55.63  Aligned_cols=19  Identities=16%  Similarity=0.431  Sum_probs=16.2

Q ss_pred             CccceEEeEeHHHHHHHHh
Q 020813           72 LMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        72 l~d~giYi~~~~vl~~~l~   90 (321)
                      |+|+|+|+|+....+.++.
T Consensus       228 l~D~g~~~~~~~a~~~L~~  246 (974)
T PRK13412        228 LMDIGIWLLSDRAVELLMK  246 (974)
T ss_pred             EEeeeEEEEChHHHHHHHH
Confidence            8999999999998876653

>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]

Probab=91.86  E-value=0.85  Score=37.48  Aligned_cols=71  Identities=13%  Similarity=0.189  Sum_probs=37.3

Q ss_pred             EeceEECCC-CEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          243 VKRSVIGRH-CRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       243 I~~svIg~~-~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      +...+..+. +.|++..+|...+..+...| +|...++....+.+.|...+++.+-+=+....|..|+.+.+.
T Consensus        48 ~~G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~  119 (146)
T COG1664          48 FEGDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGD  119 (146)
T ss_pred             EEEEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeE
Confidence            344445544 66666666665554444444 444444455555555655555555444445555555555443

>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins

Probab=89.62  E-value=0.59  Score=35.59  Aligned_cols=62  Identities=19%  Similarity=0.349  Sum_probs=41.8

Q ss_pred             CCEECCCcEEeceEECCCCEECCCcEEeceEEC-CCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          251 HCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVIC-SNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       251 ~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~-~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      ...|+.++.|...+-.+.+.|. +. +.+.+.. ..+.|...+.+.+.+-.+...|.+++.+.+.
T Consensus        36 ~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G~   98 (101)
T PF04519_consen   36 KVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASINGN   98 (101)
T ss_pred             EEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEEE
Confidence            6677777777766666666663 33 5544444 5667887778877777777777777777653

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=89.35  E-value=0.54  Score=49.92  Aligned_cols=60  Identities=22%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             eEeceEECCCCEECCCcE-EeceEECCCCEECCCcEEeceE-ECCCCEECcCcEecCeEECC
Q 020813          242 SVKRSVIGRHCRIGSNVK-VVNSVVMNHVTIGDGCSIQGSV-ICSNAQLQERVALKDCQVGQ  301 (321)
Q Consensus       242 ~I~~svIg~~~~Ig~~~~-I~~siI~~~v~Ig~~~~I~~~i-I~~~~~Ig~~~~i~~~iIg~  301 (321)
                      .+.+|++..++.++++.. |++|.|+.+++||++|+|.++- ...+..|.+++.|...-++.
T Consensus       333 ~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl~~  394 (974)
T PRK13412        333 FVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPVGD  394 (974)
T ss_pred             EEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEcCC
Confidence            456677777777777743 7777778888888887777764 33456777777766443333

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=87.74  E-value=1.2  Score=38.88  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=26.3

Q ss_pred             CCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhh
Q 020813           71 DLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~  110 (321)
                      +++++|+|+|++..|..+++...    .....-.|+++.+++++
T Consensus       163 ~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g  206 (229)
T cd02540         163 REVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADG  206 (229)
T ss_pred             ceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCC
Confidence            68899999999887766665321    11223357777777754

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=87.18  E-value=0.69  Score=45.53  Aligned_cols=22  Identities=14%  Similarity=0.122  Sum_probs=18.2

Q ss_pred             EEecCccceeeccCHHHHHHHc
Q 020813          170 YIASNSKYCVRLNSIQAFMDIN  191 (321)
Q Consensus       170 ~i~~~~~~w~~i~t~~~y~~~~  191 (321)
                      ++.+.+.+|.|+|++.+++++.
T Consensus       260 ~vv~~~~~W~DvGsw~~l~~~~  281 (468)
T TIGR01479       260 VVVPMDAGWSDVGSWSALWEIS  281 (468)
T ss_pred             EEEeCCCCccccCCHHHHHHhh
Confidence            3447788999999999999864

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=84.55  E-value=0.98  Score=40.86  Aligned_cols=71  Identities=11%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             ecCCCccceEEeEeHHHHHHHHhccc--c-CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCC
Q 020813           68 IRADLMDAHMYAFNRSVLQEVLDQKD--K-FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAST  144 (321)
Q Consensus        68 ~~s~l~d~giYi~~~~vl~~~l~~~~--~-~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (321)
                      ..|||.-.|=|||+|++++ +|++..  . .+=.-.|-+-.|++.                                   
T Consensus       198 APSnlai~GRYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~-----------------------------------  241 (291)
T COG1210         198 APSNLAIVGRYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKK-----------------------------------  241 (291)
T ss_pred             CCcceeeeeeeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhh-----------------------------------
Confidence            4699999999999999996 655421  0 111122444444443                                   


Q ss_pred             CCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcc
Q 020813          145 PSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  196 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~  196 (321)
                                          ..+++|  .++|--.|+|+...|++++.++..
T Consensus       242 --------------------~~v~a~--~~~GkryD~G~k~Gyi~a~v~~~l  271 (291)
T COG1210         242 --------------------EPVLAY--VFEGKRYDCGSKLGYIKANVEFAL  271 (291)
T ss_pred             --------------------CcEEEE--EecccEEccCCcccHHHHHHHHHh
Confidence                                256777  457778899999999999987744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	3e-12
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	4e-12
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	5e-12
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	4e-11
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	2e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	2e-10
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-08
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	3e-05
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	9e-04
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	7e-10
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	4e-04
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	8e-10
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	3e-04
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	7e-09
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	3e-07
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	2e-08
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-08
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-08
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	5e-08
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-08
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	6e-08
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	9e-08
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	9e-08
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	7e-06
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	1e-05
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	6e-04
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	3e-05
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	4e-05
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	1e-04
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	1e-04
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-04
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	1e-04
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	2e-04
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	3e-04
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	3e-04
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	5e-04
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	8e-04

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHV 269
           +I  +A+LG+  ++G + ++  G ++GD   +     +G++ +IG+  ++  N  + + +
Sbjct: 105 VIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEI 164

Query: 270 TIGDGCSIQ-GSVI 282
            IG  C IQ G+V+
Sbjct: 165 QIGQNCLIQSGTVV 178

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHV 269
           I+   AE+    +VG + ++  G+++G   S+    VIG    IG    +     + + V
Sbjct: 127 IVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDV 186

Query: 270 TIGDGCSIQ-GSVI 282
           TIG   SIQ G+VI
Sbjct: 187 TIGARVSIQSGAVI 200

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHV 269
           +IHP+A +     + P+ ++ + + +G  C +   SVIG +  +G +  +    V+   V
Sbjct: 132 VIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERV 191

Query: 270 TIGDGCSIQ-GSVI 282
           +IG    IQ G+VI
Sbjct: 192 SIGKRVIIQPGAVI 205

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 183 SIQAFMDINRDVIGEANHLSGYN-----FSAQNN-----IIHPSAELGSKTTVGPHCMLG 232
           +I A+   N D+      L  Y+     ++          +H   +           ++ 
Sbjct: 272 TIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAV---SSVVS 328

Query: 233 EGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERV 292
               +    ++ RS++    R  S  ++ N+VV+  V IG    +   VI     + E +
Sbjct: 329 GDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGL 387

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 169 VYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPH 228
           V +     Y + +      +D+N+  +              N  I     +     +   
Sbjct: 197 VKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSG 256

Query: 229 CMLGEGSQMGDKCSVK-----R--SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSV 281
             +     +G    +      R  +++    +IG++V+V  SV+M    I     +  SV
Sbjct: 257 TYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSV 316

Query: 282 ICSNAQL 288
           I  +   
Sbjct: 317 IAEDVNF 323

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-IGRHCRIGSNVKVVNSV-VMN 267
            N+I+    +G     G    + E +++G+   +     I  H  IG+ V + ++V V  
Sbjct: 82  ENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGE 141

Query: 268 HVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 309
              I D   +   V+ +N        L    +    V++A  
Sbjct: 142 KSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARS 183

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV---VNSV 264
           ++ II     +G   T+  +  +  G  + D   +K+ S IG    +G  +         
Sbjct: 7   KSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRIN 66

Query: 265 VMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCE 310
             + + IG+   I+  +VI  +  +       + Q G    +    +
Sbjct: 67  KKHPLIIGENALIRTENVIYGDTIIG-----DNFQTGHKVTIRENTK 108

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 24/123 (19%)

Query: 184 IQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 243
           I+    I  D I   N  +G         I  + ++G+   +G    +     +G+  ++
Sbjct: 79  IRTENVIYGDTIIGDNFQTG-----HKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNI 133

Query: 244 KRSV-IGRHCRIGSNVKVVNSVVMN-----------HVTIGDGCSIQGSV-------ICS 284
             +V +G    I   V +   VV+             VTI     I           I  
Sbjct: 134 HSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINE 193

Query: 285 NAQ 287
           +A 
Sbjct: 194 DAL 196

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 17/81 (20%)

Query: 246 SVIGRHCRIGSNVKV-------VNSVVMNHVTIGDGCSI-QGSVICSNAQLQERV----- 292
           + I +   I   V +        N  +     I D   I +GS I + + L E +     
Sbjct: 3   NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYN 62

Query: 293 ----ALKDCQVGQGYVVSAGC 309
                     +G+  ++    
Sbjct: 63  DRINKKHPLIIGENALIRTEN 83

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV-VNSVVMN 267
             I+   A +G+ + +     +  G+++G+ CS+ +   +G   RIG+ VK+  N  V +
Sbjct: 9   TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD 68

Query: 268 HVTIGDGCSIQGSVICSN-----AQLQERVALKDCQVGQGYVVSAGC 309
           +V + D      S++ +N     A ++ +   +D  V QG  + A C
Sbjct: 69  NVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANC 115

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-------IGRHCRIGSNVKVV 261
               I   AE+G   ++G +  +G   ++G++  ++ +V       +      G ++   
Sbjct: 26  HWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFT 85

Query: 262 NSVVMNHVTIGDGCSIQ-----GSVICSNAQLQERVAL-KDCQVGQGYVV 305
           N                     G+ + +N  +     + +   VG G VV
Sbjct: 86  NVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 192 RDVIGEANHLSGYNFSAQNNIIHPSA--------ELGSKTTVGPHCMLGEGSQMGDKCSV 243
           R  I +    +G+      N+IH SA        E  +   + P+ ++   +++     +
Sbjct: 60  RKKIYQKISENGFKIV---NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVIL 116

Query: 244 K-RSVIGRHCRIGSNVKVVNSVVMN-HVTIGDGCSIQGSVICSNAQLQERVAL-KDCQVG 300
              SVI   C IG    V        +V IG  C      +  N+ +   ++L  D  +G
Sbjct: 117 NTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNC-----FLGINSCVLPNLSLADDSILG 171

Query: 301 QGYVV 305
            G  +
Sbjct: 172 GGATL 176

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 184 IQAFMDINRDV-IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCS 242
           I  ++ IN    I +   L+  +      +I   + +        +  +G+   +G    
Sbjct: 98  IMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSC 157

Query: 243 VKRSV-IGRHCRIGSNVKVVNSVVMNHVTIG 272
           V  ++ +     +G    +V +     V +G
Sbjct: 158 VLPNLSLADDSILGGGATLVKNQDEKGVFVG 188

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 17/112 (15%)

Query: 203 GYNFSAQNNIIHPSA------ELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIG 255
           G++     N IHPSA       LG    V     +   S +GD   +   +V+   CR+G
Sbjct: 95  GFSLV---NAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLG 151

Query: 256 SNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV 305
           +   +   S +   V++G+   +  G+ +     +       D  VG G VV
Sbjct: 152 AACHLGPASALAGGVSVGERAFLGVGARVIPGVTIG-----ADTIVGAGGVV 198

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 195 IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRI 254
           +GE   +        ++ I   A + +   V   C LG    +G       S +     +
Sbjct: 114 LGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGP-----ASALAGGVSV 168

Query: 255 GSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSN 285
           G    + V + V+  VTIG    +  G V+  +
Sbjct: 169 GERAFLGVGARVIPGVTIGADTIVGAGGVVVRD 201

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 17/77 (22%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           II P AEL     VGP+ ++                I     I  +V      +     I
Sbjct: 8   IIDPKAELHESVEVGPYSIIEGN-----------VSIQEGTIIEGHV-----KICAGSEI 51

Query: 272 GDGCSI-QGSVICSNAQ 287
           G      QG+VI    Q
Sbjct: 52  GKFNRFHQGAVIGVMPQ 68

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           II P AE+     +G  C++G+G        VK   +    ++ +NV      +  H  +
Sbjct: 9   IISPKAEINKGVEIGEFCVIGDG--------VK---LDEGVKLHNNV-----TLQGHTFV 52

Query: 272 GDGCSI-QGSVICSNAQ 287
           G    I   +V+ +  Q
Sbjct: 53  GKNTEIFPFAVLGTQPQ 69

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 17/72 (23%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           +I   A+LG    +  +  + +            + IG +  I          +++  TI
Sbjct: 12  VIEEGAQLGDDVVIEAYAYVSKD-----------AKIGNNVVIKQGA-----RILSDTTI 55

Query: 272 GDGCSI-QGSVI 282
           GD   +   +++
Sbjct: 56  GDHSRVFSYAIV 67

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIGSNVKVVNSVVM---- 266
           II    E+G    +  +  +  G+ +G+   +   +V+G    +G N  V    V+    
Sbjct: 99  IIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVI 158

Query: 267 -----NHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAG 308
                  V + D        I +N  + E V      VG+G VV+AG
Sbjct: 159 EPPSAKPVIVEDDVV-----IGANVVVLEGV-----TVGKGAVVAAG 195

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           II P A+L     VGP+ ++G          V    IG    IGS+      V+  H TI
Sbjct: 30  IIEPGAQLHETVEVGPYAIVGSN--------V---TIGARTTIGSHS-----VIEGHTTI 73

Query: 272 GDGCSI-QGSVI 282
           G+   I   + +
Sbjct: 74  GEDNRIGHYASV 85

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 17/72 (23%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           I+   A +G+   +GP C++G               IG    + S+V     VV  H  I
Sbjct: 13  IVEEGASIGANAHIGPFCIVGPH-----------VEIGEGTVLKSHV-----VVNGHTKI 56

Query: 272 GDGCSI-QGSVI 282
           G    I Q + I
Sbjct: 57  GRDNEIYQFASI 68

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
           ++HP+A +G   +VGP+C +G               +G  C++  +       V  +  +
Sbjct: 15  VVHPNAVIGKGVSVGPYCTIGSS-----------VKLGNGCKLYPSS-----HVFGNTEL 58

Query: 272 GDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 309
           G+ C +    +  +          +  +G   VV   C
Sbjct: 59  GESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKC 96

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 33/155 (21%)

Query: 184 IQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAEL--GSKTTVG--PHCMLGEGSQMGD 239
           I+AF + N  +  +   +  ++F  ++  I+        SK         ++GEG  +  
Sbjct: 284 IEAFYNANLGITKK--PVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVI-K 340

Query: 240 KCSVKRSVIGRHCRIGSNVKVVNSVVMN-------------------HVTIGDGCSIQGS 280
            C +  SV+G    I     + +S++M                     + IG  C I+ +
Sbjct: 341 NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRA 400

Query: 281 VICSNAQLQERVAL------KDCQ-VGQGYVVSAG 308
           +I  NA++ + V +      ++      GY + +G
Sbjct: 401 IIDKNARIGDNVKIINKDNVQEAARETDGYFIKSG 435

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 7/128 (5%)

Query: 187 FMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS 246
            M+       +   +      A        A +     +    ++GE   +  +  +  +
Sbjct: 250 LMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNA 309

Query: 247 VIGRHCRIGSNVKVVNSVVMNHVTIGDG-----CSI-QGSVICSNAQLQERVALKDCQVG 300
            +G+      N  ++NS +  +     G       +        N+ LQ        ++G
Sbjct: 310 WMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGS-ESSPLKIG 368

Query: 301 QGYVVSAG 308
            G VV   
Sbjct: 369 DGCVVMPH 376

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           +  + E G    +  + ++ EG             +G   +IG+   + N V+ N V I 
Sbjct: 262 LRGTLEHGKDVEIDVNVII-EG----------NVKLGDRVKIGTGCVLKNVVIGNDVEIK 310

Query: 273 DGCSIQGSVICSNAQ 287
               ++ S++   A 
Sbjct: 311 PYSVLEDSIVGEKAA 325

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 41/112 (36%)

Query: 210 NNIIHPSAELGSKTTVGPHCML----------------GEGSQMGDKCSV-------KRS 246
           N II  + +LG +  +G  C+L                 E S +G+K ++         +
Sbjct: 277 NVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGA 336

Query: 247 VIGRHCRIGSNVKVVNSVV-----MNHVT-IGD---------GCSIQGSVIC 283
            +     +G+ V++  S V     +NH+T +GD         G    G + C
Sbjct: 337 ELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGA---GVITC 385

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 40/126 (31%)

Query: 195 IGE----ANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQM---------GDKC 241
           +G+    + +  G++F      +HP  +   K  +G  C +G G+            D  
Sbjct: 27  VGKHSYYSGYYHGHSFDDCVRYLHPERDDVDKLVIGSFCSIGSGAVFMMAGNQGHRSDWI 86

Query: 242 SV---------------------KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QG 279
           S                        ++IG    IG+       ++M  V IG G  I   
Sbjct: 87  STFPFFYQDNDNFADARDGFTRSGDTIIGHDVWIGTEA-----MIMPGVKIGHGAIIASR 141

Query: 280 SVICSN 285
           SV+  +
Sbjct: 142 SVVTKD 147

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 36/115 (31%)

Query: 202 SGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ------------------------- 236
           S    S ++ +++    +G K  +G  C +G G+                          
Sbjct: 45  SKRGESFEDQVLYHYEVIGDKLIIGRFCSIGPGTTFIMNGANHRMDGSTYPFHLFRMGWE 104

Query: 237 -----MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-QGSVICSN 285
                + D        IG    IG +V      +M  V IGDG  I   +V+  N
Sbjct: 105 KYMPSLKDLPLKGDIEIGNDVWIGRDV-----TIMPGVKIGDGAIIAAEAVVTKN 154

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           I    E+  +  +  + +L   +++G +  +          IG+   + NS++    ++ 
Sbjct: 271 IDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMI-EESSVA 329

Query: 273 DGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
           DG ++         S + +   +   V +K   +G+ 
Sbjct: 330 DGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGEN 366

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 18/82 (21%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-----IGRHCRIG--------- 255
           N I+    ++G++T +     +   S +G    +  S+     +     +G         
Sbjct: 286 NVILKGQTKIGAETVLTNGTYV-VDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNS 344

Query: 256 ---SNVKVVNSVVMNHVTIGDG 274
              + V + N V +   +IG+ 
Sbjct: 345 SLGAQVHIGNFVEVKGSSIGEN 366

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 183 SIQAFMDINRDV-IGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGD-- 239
            I  F  ++  V IG  +H++ Y       +     E+     +    ++          
Sbjct: 60  RIDDFCILSGKVTIGSYSHIAAYTALYGGEV---GIEMYDFANISSRTIVYAAIDDFSGN 116

Query: 240 ------------KCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVI 282
                            + ++ +H  IG++      ++  +V IG+G ++   S++
Sbjct: 117 ALMGPTIPNQYKNVKTGKVILKKHVIIGAHS-----IIFPNVVIGEGVAVGAMSMV 167

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 50/138 (36%)

Query: 210 NNIIHPSA--------ELGSKTTVGPHCMLGEGSQMGDKCSVKRSV----------IGRH 251
           N +I   A         +G+   +   C+L     +G    +              +   
Sbjct: 38  NVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDF 97

Query: 252 CRIGSNVKVVNSV--------------------VMNHVTIGDGCSI-QGSVICSNAQLQE 290
             I S   V  ++                        V +     I   S+I        
Sbjct: 98  ANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSII-------- 149

Query: 291 RVALKDCQVGQGYVVSAG 308
                +  +G+G  V A 
Sbjct: 150 ---FPNVVIGEGVAVGAM 164

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 18/82 (21%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSV-----IGRHCRIG--------- 255
              +    ++G +  VGP   L     +GD  SV R+      IG    +G         
Sbjct: 295 GTQLLGRTQIGGRCVVGPDTTL-TDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGT 353

Query: 256 ---SNVKVVNSVVMNHVTIGDG 274
              ++ K+   V + + TIG G
Sbjct: 354 ALGADGKLGAFVEVKNSTIGTG 375

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           I     +G  T + P   L   +Q+G +C V          +G    VV +   +  +IG
Sbjct: 280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHG-SSSSIG 338

Query: 273 DGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
           DG ++        G+ + ++ +L   V +K+  +G G
Sbjct: 339 DGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTG 375

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 41/127 (32%)

Query: 195 IGE----ANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ-------------- 236
           +G     + +  G++F      + P  +   K  +G  C +G G+               
Sbjct: 25  VGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAGNQGHRAEWA 84

Query: 237 -----------------MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI-Q 278
                            +        ++IG    IG+       + M  V +G G  I  
Sbjct: 85  STFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEA-----MFMPGVRVGHGAIIGS 139

Query: 279 GSVICSN 285
            +++  +
Sbjct: 140 RALVTGD 146

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           +      G   T+  + ++     +GD+  +    + ++C IG + ++    V+    + 
Sbjct: 265 LRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLD 324

Query: 273 DGCSI-------QGSVICSNAQLQERVALKDCQVGQG 302
             C++        G+ +   A +   V +K  ++G+G
Sbjct: 325 ANCTVGPFARLRPGAELAEGAHVGNFVEIKKARLGKG 361

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 38/132 (28%)

Query: 184 IQAFMDINRDV-IGEANHLS-GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQ----- 236
           I+  ++   +V +GE ++       +    I++    L  K  +G  C +G G       
Sbjct: 20  IKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNG 79

Query: 237 -------------------------MGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTI 271
                                    +        ++IG    IG +V     V+M  V I
Sbjct: 80  ANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDV-----VIMPGVKI 134

Query: 272 GDGCSI-QGSVI 282
           GDG  +   SV+
Sbjct: 135 GDGAIVAANSVV 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.93
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.91
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.89
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.85
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.82
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.82
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.76
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.73
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.68
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.67
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.67
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.66
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.65
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.64
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.64
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.63
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.61
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.61
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.61
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.6
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.6
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.59
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.59
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.59
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.58
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.58
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.58
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.57
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.57
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.57
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.57
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.57
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.56
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.56
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.56
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.55
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.55
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.55
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.55
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.54
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.53
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.53
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.51
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.51
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.5
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.5
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.5
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.5
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.5
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.49
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.49
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.48
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.48
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.48
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.47
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.45
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.44
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.44
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.44
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.44
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.44
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.43
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.43
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.43
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.43
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.43
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.42
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.42
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.41
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.4
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.4
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.38
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.38
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.37
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.34
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.34
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.33
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.33
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.32
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.29
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.29
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.28
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.27
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.25
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.25
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.25
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.23
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.22
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.21
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.19
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.17
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.17
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.16
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.15
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.15
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.14
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.13
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.13
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.11
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.11
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.1
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.08
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.07
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.04
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	98.99
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	98.98
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	98.97
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	98.96
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	98.93
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.88
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.83
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.79
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.74
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.74
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.73
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.44
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.4
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	98.16
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	97.78
3pnn_A	303	Conserved domain protein; structural genomics, PSI	97.46
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	97.17
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	97.14
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	97.13
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	97.08
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	96.91
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	95.67
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	94.38
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	94.3
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	94.13
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	93.99
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	93.93
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	93.6
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	93.41
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	92.99
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	92.46
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	91.8
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	91.34
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	91.11
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	90.3
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	88.92
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	87.29
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	84.32

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.93  E-value=2.7e-25  Score=214.62  Aligned_cols=168  Identities=20%  Similarity=0.377  Sum_probs=129.5

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc-ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  148 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~-~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (321)
                      ++++++|+|+|++++|..++++. ....++.+|++|.+++++                                      
T Consensus       225 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g--------------------------------------  266 (451)
T 1yp2_A          225 PFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG--------------------------------------  266 (451)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTT--------------------------------------
T ss_pred             cceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcC--------------------------------------
Confidence            45789999999999986666543 234567789999988764                                      


Q ss_pred             ccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccc-ccCC---CcccccCCeeeCCCCeeCCCcE
Q 020813          149 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA-NHLS---GYNFSAQNNIIHPSAELGSKTT  224 (321)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~-~~~~---~~~~~~~~~~i~p~a~i~~~~~  224 (321)
                                      .++++|  ..++||.++|++++|+++++.++... ....   ..........|+|++.| .++.
T Consensus       267 ----------------~~v~~~--~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~  327 (451)
T 1yp2_A          267 ----------------MRVQAY--LYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-LDAD  327 (451)
T ss_dssp             ----------------CCEEEE--ECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE-EEEE
T ss_pred             ----------------CceEEE--EeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE-cceE
Confidence                            246666  45789999999999999999988654 2111   11112223344445544 4455


Q ss_pred             ECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCC-------------------CEECCCcEEeceEECCC
Q 020813          225 VGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGCSIQGSVICSN  285 (321)
Q Consensus       225 i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~-------------------v~Ig~~~~I~~~iI~~~  285 (321)
                      | .++.||++|.|+. +.|.+++||++|.||++|+|.+++++++                   +.||++|.|++++|+++
T Consensus       328 I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~  405 (451)
T 1yp2_A          328 V-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKN  405 (451)
T ss_dssp             E-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTT
T ss_pred             E-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCC
Confidence            6 4678888888876 7888999999999999999999999888                   99999999999999999


Q ss_pred             CEECcCcEecC
Q 020813          286 AQLQERVALKD  296 (321)
Q Consensus       286 ~~Ig~~~~i~~  296 (321)
                      |.||+|++|.+
T Consensus       406 ~~IG~~~~i~~  416 (451)
T 1yp2_A          406 ARIGDNVKIIN  416 (451)
T ss_dssp             CEECTTCEECC
T ss_pred             cEECCCCEEeC
Confidence            99999999863

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.91  E-value=6.2e-24  Score=203.41  Aligned_cols=171  Identities=19%  Similarity=0.300  Sum_probs=115.6

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      +++.++|+|+|++++|..++++..    ...++..|++|.|++++                                   
T Consensus       201 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g-----------------------------------  245 (420)
T 3brk_X          201 FALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHG-----------------------------------  245 (420)
T ss_dssp             EEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHS-----------------------------------
T ss_pred             ceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhC-----------------------------------
Confidence            458999999999999866665321    23456679999988764                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEec---------CccceeeccCHHHHHHHchhhccccccCCCcc---cccCCeee
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIAS---------NSKYCVRLNSIQAFMDINRDVIGEANHLSGYN---FSAQNNII  213 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~---------~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~~~---~~~~~~~i  213 (321)
                                          ++++|..+         .++||.|++|+++|+++++.++........+.   .......+
T Consensus       246 --------------------~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i  305 (420)
T 3brk_X          246 --------------------KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEI  305 (420)
T ss_dssp             --------------------CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCC
T ss_pred             --------------------cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeecccc
Confidence                                24455331         16799999999999999999987654322110   11123345


Q ss_pred             CCCCeeCC-----CcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEE
Q 020813          214 HPSAELGS-----KTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQL  288 (321)
Q Consensus       214 ~p~a~i~~-----~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~I  288 (321)
                      +|++.+++     ++.+ .++.||++|+| +++.|.+|+||++|.||++|.|.+|+|+++|.||++|.|.+|+||+++.|
T Consensus       306 ~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i  383 (420)
T 3brk_X          306 TPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVI  383 (420)
T ss_dssp             CCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEE
T ss_pred             CCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEE
Confidence            55555554     4444 47777777777 67777778888888888888888888888888888888888888888888


Q ss_pred             CcCcEecCe
Q 020813          289 QERVALKDC  297 (321)
Q Consensus       289 g~~~~i~~~  297 (321)
                      |++++|.+.
T Consensus       384 ~~~~~i~~~  392 (420)
T 3brk_X          384 PEGLIVGED  392 (420)
T ss_dssp             CTTCEESSC
T ss_pred             CCCCEEeCC
Confidence            877777543

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.89  E-value=5.3e-22  Score=188.58  Aligned_cols=168  Identities=20%  Similarity=0.318  Sum_probs=104.4

Q ss_pred             cCCCccceEEeEeHHHHHHHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCC
Q 020813           69 RADLMDAHMYAFNRSVLQEVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANAST  144 (321)
Q Consensus        69 ~s~l~d~giYi~~~~vl~~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (321)
                      .+++.++|+|+|++++|+.+ ++..    ...++ .|+++.+ ..+                                  
T Consensus       152 ~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~-~~~~~~~-~~g----------------------------------  194 (401)
T 2ggo_A          152 PSNLINAGIYKLNSDIFTYL-DKISISERGELEL-TDAINLM-AKD----------------------------------  194 (401)
T ss_dssp             SCSEEEEEEEEEETHHHHHH-HHSCCCSSSCBCH-HHHHHHH-HHH----------------------------------
T ss_pred             CCcEEEEEEEEEcHHHHHHh-hhcCcCCCCceEH-HHHHHHH-HCC----------------------------------
Confidence            45688999999999999654 3221    11122 3667766 543                                  


Q ss_pred             CCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccccc------CCCcccccCCeeeCCCCe
Q 020813          145 PSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANH------LSGYNFSAQNNIIHPSAE  218 (321)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~~------~~~~~~~~~~~~i~p~a~  218 (321)
                                          .++.++  ..+++|.+++|+++|.++++.++.+...      +........+..+++++.
T Consensus       195 --------------------~~v~~~--~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~  252 (401)
T 2ggo_A          195 --------------------HRVKVI--EYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAE  252 (401)
T ss_dssp             --------------------SCEEEE--ECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCE
T ss_pred             --------------------CcEEEE--EecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCE
Confidence                                134555  3456999999999999999887654321      111112222334444444


Q ss_pred             eCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec
Q 020813          219 LGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK  295 (321)
Q Consensus       219 i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~  295 (321)
                      |++++.|.+++.||++|.|+++|.|. +++||++|.||+++.|.+|+|++++.|++++.|++++||+++.||+++.|.
T Consensus       253 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~  330 (401)
T 2ggo_A          253 IKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIA  330 (401)
T ss_dssp             ECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEEC
T ss_pred             ECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEc
Confidence            44555555555566666666666665 367777777777777777777777766666666666666666666666654

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.85  E-value=4.3e-20  Score=178.82  Aligned_cols=176  Identities=18%  Similarity=0.237  Sum_probs=123.9

Q ss_pred             CCCccceEEeEeHHHHHHHHhcccc----CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~----~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|+|+|+++.|.+++++...    ......|+++.|++.+                                   
T Consensus       174 ~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g-----------------------------------  218 (468)
T 1hm9_A          174 IKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETG-----------------------------------  218 (468)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHT-----------------------------------
T ss_pred             CeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCC-----------------------------------
Confidence            5789999999999966556543111    1223478999988875                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccceeecc--CHHHHHHHchhhccccc------c---CCC-cccccCCeee
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLN--SIQAFMDINRDVIGEAN------H---LSG-YNFSAQNNII  213 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~--t~~~y~~~~~~~l~~~~------~---~~~-~~~~~~~~~i  213 (321)
                                         .++++|  ..++||.+++  ++++|.+++..+..+..      .   +.+ ..+....+.|
T Consensus       219 -------------------~~v~~~--~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i  277 (468)
T 1hm9_A          219 -------------------EKVGAY--TLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEI  277 (468)
T ss_dssp             -------------------CCEEEE--ECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEE
T ss_pred             -------------------CEEEEE--EcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEE
Confidence                               245666  3467998755  99999998865532210      0   111 1123445566


Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      ++++.|++++.|++++.||++|.|++++.|++++||++|.|+ ++.|.+++|++++.||++|.|. +++|++++.||+++
T Consensus       278 ~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~  356 (468)
T 1hm9_A          278 APEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFV  356 (468)
T ss_dssp             CTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEE
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCc
Confidence            666777777777777888888888888888888889888888 8888888888888888888888 88888888887776


Q ss_pred             EecCeEECCC
Q 020813          293 ALKDCQVGQG  302 (321)
Q Consensus       293 ~i~~~iIg~~  302 (321)
                      .+.+++||++
T Consensus       357 ~i~~~~Ig~~  366 (468)
T 1hm9_A          357 EVKGSSIGEN  366 (468)
T ss_dssp             EEESCEECTT
T ss_pred             EEeeeEEcCC
Confidence            6654444333

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.82  E-value=3e-19  Score=172.20  Aligned_cols=174  Identities=13%  Similarity=0.152  Sum_probs=126.5

Q ss_pred             CCCccceEEeEeHHHHHHHHhcccc----CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDK----FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~----~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      +.+.++|+|+|+++.|..+++....    ......|+++.+.+.+                                   
T Consensus       165 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g-----------------------------------  209 (456)
T 2v0h_A          165 IKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDN-----------------------------------  209 (456)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTT-----------------------------------
T ss_pred             CcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcC-----------------------------------
Confidence            4578899999999977556543111    1122368888877654                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcccc--------cc-CCC-cccccCCeeeCC
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA--------NH-LSG-YNFSAQNNIIHP  215 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~--------~~-~~~-~~~~~~~~~i~p  215 (321)
                                         .++.+|..+....|.+++|+++|.+++..+....        .. ..+ ..++.....|++
T Consensus       210 -------------------~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~  270 (456)
T 2v0h_A          210 -------------------CQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGK  270 (456)
T ss_dssp             -------------------CCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECS
T ss_pred             -------------------CEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECC
Confidence                               2455553222234578999999999887553221        00 011 123344566777


Q ss_pred             CCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          216 SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++.|++++.|++++.||++|.|+++|.|.+++||++|.|++++.|.+++|++++.||+++.|. +++|++++.||+++.+
T Consensus       271 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i  350 (456)
T 2v0h_A          271 DVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEI  350 (456)
T ss_dssp             SCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEE
T ss_pred             CCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEE
Confidence            777777888878888999999999999999999999999999999999999999999999998 8999999988888777


Q ss_pred             cCe
Q 020813          295 KDC  297 (321)
Q Consensus       295 ~~~  297 (321)
                      .++
T Consensus       351 ~~~  353 (456)
T 2v0h_A          351 KKS  353 (456)
T ss_dssp             ESC
T ss_pred             ecc
Confidence            543

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.82  E-value=2e-19  Score=173.53  Aligned_cols=175  Identities=15%  Similarity=0.208  Sum_probs=125.6

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc----ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK----DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTP  145 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~----~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (321)
                      ++++++|+|+|+++.|..+++..    ........|+++.+.+.+                                   
T Consensus       168 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g-----------------------------------  212 (459)
T 4fce_A          168 INEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADG-----------------------------------  212 (459)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTT-----------------------------------
T ss_pred             ccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCC-----------------------------------
Confidence            56889999999999886666531    112233467788777765                                   


Q ss_pred             CccccccCCCCCCCCCCCcceeEEEEecCccce--eeccCHHHHHHHchhhcccc--------ccC--CCcccccCCeee
Q 020813          146 SFHELYALGPNGSAPVRRTHKCCVYIASNSKYC--VRLNSIQAFMDINRDVIGEA--------NHL--SGYNFSAQNNII  213 (321)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w--~~i~t~~~y~~~~~~~l~~~--------~~~--~~~~~~~~~~~i  213 (321)
                                         .++.+|  ..++||  .+++|+++|..++..+..+.        ..+  ....+...+..|
T Consensus       213 -------------------~~v~~~--~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~i  271 (459)
T 4fce_A          213 -------------------KKIATV--HPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTH  271 (459)
T ss_dssp             -------------------CCEEEE--CCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEE
T ss_pred             -------------------CeEEEE--EcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEE
Confidence                               245566  456566  56889999999875443211        111  011123345567


Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      ++++.|++++.|.+++.||++|.|+.+|.|.+++||++|.|++++.|.+++|+++|.||++|.|. +++|++++.||+++
T Consensus       272 g~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~  351 (459)
T 4fce_A          272 GRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFV  351 (459)
T ss_dssp             CSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEE
T ss_pred             CCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCe
Confidence            77777777777777788888888888888888999999999999999999999999999999997 88888888888877


Q ss_pred             EecCeEEC
Q 020813          293 ALKDCQVG  300 (321)
Q Consensus       293 ~i~~~iIg  300 (321)
                      .+.+++|+
T Consensus       352 ~i~~~~i~  359 (459)
T 4fce_A          352 EIKKARLG  359 (459)
T ss_dssp             EEEEEEEC
T ss_pred             EEeeeEEc
Confidence            66444333

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.76  E-value=9.5e-18  Score=164.00  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=77.1

Q ss_pred             CeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec--------eEECCCCEE
Q 020813          217 AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG--------SVICSNAQL  288 (321)
Q Consensus       217 a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~--------~iI~~~~~I  288 (321)
                      +.+++.+.+.+++.|++++.||+.+.+++|+||+++.|+..+.+.+++|+++|.||+++.+-|        ++||++|.|
T Consensus       341 ~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~i  420 (501)
T 3st8_A          341 AAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRT  420 (501)
T ss_dssp             CEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEE
T ss_pred             cccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEE
Confidence            344445555566666677777777777788888888888888888999999999999988843        889999999


Q ss_pred             CcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          289 QERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       289 g~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      |.++.|. ++.||++++|++|+.+...
T Consensus       421 G~~~~l~~~v~Ig~~~~i~ags~v~~d  447 (501)
T 3st8_A          421 GSDTMFVAPVTIGDGAYTGAGTVVRED  447 (501)
T ss_dssp             CTTCEEESSEEECTTCEECTTCEECSC
T ss_pred             CCCCEEcCCcEECCCCEECCCCEECcc
Confidence            9988775 7888999988888887543

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.73  E-value=7.7e-17  Score=142.82  Aligned_cols=138  Identities=17%  Similarity=0.262  Sum_probs=100.6

Q ss_pred             cCccc----eeeccCHHHHHHHchhhccccccCCC--cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-c
Q 020813          173 SNSKY----CVRLNSIQAFMDINRDVIGEANHLSG--YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-R  245 (321)
Q Consensus       173 ~~~~~----w~~i~t~~~y~~~~~~~l~~~~~~~~--~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~  245 (321)
                      ...+|    |.++++   |+++++.++........  ........+.++.+.|++++.|++++.||++|.|+.++.|. +
T Consensus        45 ~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~  121 (240)
T 3r8y_A           45 KKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIG  121 (240)
T ss_dssp             SSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEECTTCEECTT
T ss_pred             CCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEECCCCEECCC
Confidence            55556    999887   78888877643211100  00011111224455566666666666666666666666663 4


Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECCCcEEec---------eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcC
Q 020813          246 SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~  313 (321)
                      ++||++|.|+.++.|. +++|+++|+|++++.+.+         ++|+++|.||.+++| .++.||++++|++++.+.+
T Consensus       122 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~  200 (240)
T 3r8y_A          122 AVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTE  200 (240)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECC
Confidence            7899999999999996 899999999999999986         999999999999988 7999999999999998865

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.68  E-value=9.2e-17  Score=151.44  Aligned_cols=16  Identities=19%  Similarity=0.206  Sum_probs=13.7

Q ss_pred             CCccceEEeEeHHHHH
Q 020813           71 DLMDAHMYAFNRSVLQ   86 (321)
Q Consensus        71 ~l~d~giYi~~~~vl~   86 (321)
                      .+.++|+|+|+++++.
T Consensus        74 ~~~~aGiyI~~~~~l~   89 (374)
T 2iu8_A           74 KSSEAGAIIISRTQFQ   89 (374)
T ss_dssp             HTCCCSEEEEEHHHHH
T ss_pred             hcCCcEEEEeChhHhh
Confidence            4679999999999874

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.67  E-value=8.5e-16  Score=131.43  Aligned_cols=107  Identities=16%  Similarity=0.253  Sum_probs=89.3

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEe------ceEECCCCEECCCcE
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV------NSVVMNHVTIGDGCS  276 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~------~siI~~~v~Ig~~~~  276 (321)
                      ......|++++.|++++.|.+++.||++|.|++++.|..    .+||++|.|++++.|.      +++|+++|.||+++.
T Consensus        30 ~~~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~  109 (191)
T 3ixc_A           30 AGVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCI  109 (191)
T ss_dssp             TTBCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCE
T ss_pred             cCCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCE
Confidence            344556677777777777777788888888888888863    4999999999999998      899999999999999


Q ss_pred             EeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          277 IQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       277 I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      |.+++|++++.||+++.|. ++.||++++|++++.+.+
T Consensus       110 i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~  147 (191)
T 3ixc_A          110 LHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTR  147 (191)
T ss_dssp             ECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECC
Confidence            9999999999999999885 577777777777777664

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.67  E-value=1.2e-15  Score=128.46  Aligned_cols=105  Identities=17%  Similarity=0.272  Sum_probs=89.9

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEec
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQG  279 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~~  279 (321)
                      ....+++++.|++++.+.+++.||++|.|++++.|..    ++||++|.|++++.|.     +++|++++.|++++.|.+
T Consensus        11 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~   90 (173)
T 1xhd_A           11 KKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHS   90 (173)
T ss_dssp             BCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEES
T ss_pred             CCCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeC
Confidence            3455677777777777777788888888888888865    7999999999999998     899999999999999999


Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++|++++.||+++.|. ++.||++++|++++.+..
T Consensus        91 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~  125 (173)
T 1xhd_A           91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQ  125 (173)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CEECCCCEEcCCCEEcCCCEECCCCEECCCCEECC
Confidence            9999999999999875 688888888888887764

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.66  E-value=2e-15  Score=129.37  Aligned_cols=107  Identities=15%  Similarity=0.257  Sum_probs=87.2

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEe-----------------ceEEC
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVV-----------------NSVVM  266 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~-----------------~siI~  266 (321)
                      .++..|+|+|.|.+++.|++++.||++|.|+++|.|.    +.+||++|.|++++.|.                 +++|+
T Consensus        10 ~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig   89 (194)
T 3tv0_A           10 QKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIG   89 (194)
T ss_dssp             --CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEEC
T ss_pred             CCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEEC
Confidence            3467889999999999998999999999999999885    46999999999999995                 35799


Q ss_pred             CCCEECCCcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          267 NHVTIGDGCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       267 ~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      +++.|+.++.+.++.|++++.|++++.|. ++.||++|+|++++.+.+.
T Consensus        90 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~  138 (194)
T 3tv0_A           90 TNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF  138 (194)
T ss_dssp             SSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCC
T ss_pred             CcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCC
Confidence            99999999999888888888888888774 6666666666666665554

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.65  E-value=1.8e-15  Score=131.48  Aligned_cols=98  Identities=19%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             CCCCeeCCCcEECCCCEECCCCEECCCCeEe-----ceEECCCCEECCCcEEec---------------eEECCCCEECC
Q 020813          214 HPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN---------------SVVMNHVTIGD  273 (321)
Q Consensus       214 ~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~---------------siI~~~v~Ig~  273 (321)
                      ++++.|++++.+++++.||++|.|+++|.|.     +++||++|.|++++.|..               ++|+++|.|++
T Consensus        43 ~~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~  122 (213)
T 3kwd_A           43 APTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITH  122 (213)
T ss_dssp             CTTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECT
T ss_pred             CCCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECC
Confidence            3333333333333344444444444444442     245555555555555542               44555555555


Q ss_pred             CcEEec-eEECCCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813          274 GCSIQG-SVICSNAQLQERVALKDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       274 ~~~I~~-~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i  311 (321)
                      ++.|.+ ++|+++|.||++++|.+++||++++|++++.+
T Consensus       123 ~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V  161 (213)
T 3kwd_A          123 MALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI  161 (213)
T ss_dssp             TCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred             CcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence            555553 55555555555555544545555555444444

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.64  E-value=2.5e-15  Score=126.47  Aligned_cols=104  Identities=18%  Similarity=0.280  Sum_probs=83.7

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEece
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQGS  280 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~~~  280 (321)
                      ...+++++.|++++.+.+++.||+++.|++++.|..    ++||++|.|++++.|.     +++|++++.|++++.|.++
T Consensus        10 ~~~i~~~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~   89 (173)
T 1v3w_A           10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGA   89 (173)
T ss_dssp             CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESC
T ss_pred             CCEECCCCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCC
Confidence            345666667777776666777777777777777764    7999999999999997     5899999999999999999


Q ss_pred             EECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          281 VICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +|++++.||.++.|. ++.||++++|++++.+.+
T Consensus        90 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~  123 (173)
T 1v3w_A           90 KVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPP  123 (173)
T ss_dssp             EECSSEEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred             EECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence            999999999999864 677777777777776654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.64  E-value=2.5e-15  Score=127.76  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEE------------eceEECCCCEECC
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKV------------VNSVVMNHVTIGD  273 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I------------~~siI~~~v~Ig~  273 (321)
                      ...+++++.|++++.+++++.||++|.|++++.|..    ++||++|.|++++.|            .+++|+++|.|++
T Consensus        15 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~   94 (187)
T 3r3r_A           15 FPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGH   94 (187)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECT
T ss_pred             CcccCCCeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECC
Confidence            334556666666666666677777777777777763    499999999999999            6789999999999


Q ss_pred             CcEEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          274 GCSIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       274 ~~~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +|.|.+++|++++.||++++|. ++.||++++|++++.+.+
T Consensus        95 ~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~  135 (187)
T 3r3r_A           95 KVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQ  135 (187)
T ss_dssp             TCEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred             CCEEeCcEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence            9999999999999999999884 677788777777777764

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.63  E-value=1.3e-15  Score=131.54  Aligned_cols=101  Identities=13%  Similarity=0.218  Sum_probs=79.5

Q ss_pred             CCCCeeCCCcEECC--CCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe----ceEECCCCEECCCcEE---------
Q 020813          214 HPSAELGSKTTVGP--HCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV----NSVVMNHVTIGDGCSI---------  277 (321)
Q Consensus       214 ~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~----~siI~~~v~Ig~~~~I---------  277 (321)
                      ++++.|++++.+..  ++.||++|.|+++|.|. +++||++|.|++++.|.    +++|+++|.|+++|.|         
T Consensus        36 g~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~  115 (205)
T 3vbi_A           36 GKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSG  115 (205)
T ss_dssp             CSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSS
T ss_pred             CCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCccc
Confidence            34444444444444  56666666666666666 48999999999999993    4899999999999999         


Q ss_pred             -----------------eceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          278 -----------------QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       278 -----------------~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                                       ++++||++|.||+++.|. ++.||++++|++++.+.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~  170 (205)
T 3vbi_A          116 NALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES  170 (205)
T ss_dssp             SSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred             ccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence                             478999999999999886 8899999999999888754

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.61  E-value=6.6e-15  Score=125.34  Aligned_cols=102  Identities=14%  Similarity=0.206  Sum_probs=80.4

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEece------------EECCCCEECCCc
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS------------VVMNHVTIGDGC  275 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~s------------iI~~~v~Ig~~~  275 (321)
                      .+++++.|++++.+++++.||++|.|++++.|.    +.+||++|.|++++.|..+            +|+++|.|+++|
T Consensus        21 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~  100 (189)
T 3r1w_A           21 KLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQA  100 (189)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTC
T ss_pred             EECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCC
Confidence            455556666666666667777777777777775    3599999999999999765            899999999999


Q ss_pred             EEeceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          276 SIQGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       276 ~I~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      .|.+++||+++.||+++.|. ++.||++++|++++.+.+
T Consensus       101 ~i~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~  139 (189)
T 3r1w_A          101 MLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSP  139 (189)
T ss_dssp             EEESCEECSSEEECTTCEECTTCEECSSCEECTTCEECT
T ss_pred             EEeCcEECCCcEECCCCEEcCCCEECCCCEEccCCEECC
Confidence            99999999999999999874 677777777777766664

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.61  E-value=1.2e-14  Score=124.13  Aligned_cols=104  Identities=21%  Similarity=0.417  Sum_probs=62.7

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-------ceEECCCCEECCCcEE----
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-------NSVVMNHVTIGDGCSI----  277 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-------~siI~~~v~Ig~~~~I----  277 (321)
                      .++|++.+.|++++.|++++.|+.++.||++|.|.. ++|+.++.||++|.|.       ++.|++++.||+++.+    
T Consensus         9 ~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~~~~   88 (192)
T 3mqg_A            9 TAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVY   88 (192)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCCSCS
T ss_pred             CcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEeccc
Confidence            344444445555555544444444455555555432 4444444444444443       3344444444444444    


Q ss_pred             ------------eceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          278 ------------QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       278 ------------~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                                  ..++|++++.||.++.|. ++.||++++|++++.+..
T Consensus        89 ~~~~~~~~~~~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~  137 (192)
T 3mqg_A           89 NPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNK  137 (192)
T ss_dssp             SCBTTBCCGGGCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCccccccccccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECc
Confidence                        347899999999999875 789999999999888765

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.61  E-value=2.6e-14  Score=134.36  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=33.8

Q ss_pred             ceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEEC
Q 020813          177 YCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIG  255 (321)
Q Consensus       177 ~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig  255 (321)
                      .+..+.++...+.....++......  ...+.+.+.|++++.|++++.|+++++|++++.||++|.|.. ++|+++|.||
T Consensus        94 ~~l~~~~p~~~~~~~~~~~~~~~~~--~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG  171 (372)
T 3pmo_A           94 TALVVANPYLAYASLSHLFDRKPKA--AAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIG  171 (372)
T ss_dssp             CEEECSCHHHHHHHHHGGGCCCCCC--CSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEEEECCHHHHHHHHHHHhcccccc--ccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            3455566665554444444332211  112233344444444444444444444444444444444422 3333333333


Q ss_pred             CCcEE
Q 020813          256 SNVKV  260 (321)
Q Consensus       256 ~~~~I  260 (321)
                      ++|.|
T Consensus       172 ~~~~I  176 (372)
T 3pmo_A          172 EGGWL  176 (372)
T ss_dssp             TTCEE
T ss_pred             CCccc
Confidence            33333

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.60  E-value=2e-14  Score=124.92  Aligned_cols=105  Identities=13%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             CCeeeCCCCeeCCCcEEC----CCCEECCCCEECCCCeEec---------------eEECCCCEECCCcEEec-eEECCC
Q 020813          209 QNNIIHPSAELGSKTTVG----PHCMLGEGSQMGDKCSVKR---------------SVIGRHCRIGSNVKVVN-SVVMNH  268 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~----~~~~Ig~~~~I~~~~~I~~---------------svIg~~~~Ig~~~~I~~-siI~~~  268 (321)
                      .+..|++++.|++++.|.    .++.||++|.|+++|.|..               ++||++|.|++++.|.. ++|+++
T Consensus        56 ~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~  135 (213)
T 3kwd_A           56 GDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDG  135 (213)
T ss_dssp             ESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTT
T ss_pred             CceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCC
Confidence            344555555555555552    2457788888888888864               88999999999999987 999999


Q ss_pred             CEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813          269 VTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       269 v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~  313 (321)
                      |.||.++.|.+++|++++.||+++++.+++|++++.|++++.+..
T Consensus       136 v~IG~~a~I~~~~Ig~~~~Igags~V~~~~i~~~~~v~~~~vv~~  180 (213)
T 3kwd_A          136 CFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPPGKYVPSGMVITT  180 (213)
T ss_dssp             CEECTTCEEEEEEECTTCEECSSCEEESCEECTTBEECTTCEECS
T ss_pred             CEECCCCEEeCcEECCCCEEcCCCEECCcEeCCCCEECCCcEEcC
Confidence            999999999999999999999999999999999999999999874

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.60  E-value=8.4e-15  Score=138.82  Aligned_cols=108  Identities=23%  Similarity=0.308  Sum_probs=94.7

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe--------
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ--------  278 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~--------  278 (321)
                      ...+..|++++.|++++.|++++.||++|.|++++.|.+++||+++.|++++.|.+++|+++|.||+++.|.        
T Consensus       259 i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~  338 (401)
T 2ggo_A          259 IEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKE  338 (401)
T ss_dssp             EESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSC
T ss_pred             EeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCc
Confidence            334566777777878888888888889999999999988999999999999999999999999999999997        


Q ss_pred             -----------------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          279 -----------------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       279 -----------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                                       +++||++|+||++++|. ++.||++++|++++.+.+.
T Consensus       339 ~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~  392 (401)
T 2ggo_A          339 VKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD  392 (401)
T ss_dssp             CEEEETTEEEECSCSSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             eeEEECCceEEecccccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc
Confidence                             78999999999999876 7899999999999988764

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.59  E-value=7.2e-15  Score=142.18  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECc
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE  290 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~  290 (321)
                      ..+++++.|++++.+.+++.||++|.|+++|.|.+++||++|.|+++|.|.+|+|+++|.|++++.|.+++||++|.||+
T Consensus       274 ~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~  353 (496)
T 3c8v_A          274 AGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGF  353 (496)
T ss_dssp             --CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECT
T ss_pred             cccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECC
Confidence            34566677777777777888888888888888888999999999999999999999999999999999999999999999


Q ss_pred             CcEec-C----eEECCCcEEcCCcEEc
Q 020813          291 RVALK-D----CQVGQGYVVSAGCEYK  312 (321)
Q Consensus       291 ~~~i~-~----~iIg~~~~V~~~~~i~  312 (321)
                      +++|. +    ++||++++|++++.+.
T Consensus       354 ~a~I~~~~~~~v~IG~~a~IGagsvV~  380 (496)
T 3c8v_A          354 NSFLQGSESSPLKIGDGCVVMPHTIID  380 (496)
T ss_dssp             TCEEECCSSSCEEECTTCEECTTCEEE
T ss_pred             CCEEeCCCCcceEECCCCEECCCCEEe
Confidence            99887 4    5899999999888887

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.59  E-value=5.4e-14  Score=131.57  Aligned_cols=98  Identities=18%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             ceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEEC------CCCEECCCCeEe-ceEEC
Q 020813          177 YCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLG------EGSQMGDKCSVK-RSVIG  249 (321)
Q Consensus       177 ~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig------~~~~I~~~~~I~-~svIg  249 (321)
                      .|..+.++...+.....++......   ....+.++|++++.|++++.|+++++|+      ++|.|+++|.|. +++||
T Consensus        78 ~~i~~~~p~~~~~~~~~~~~~~~~~---~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG  154 (357)
T 4e79_A           78 NFIIVDNPYLAFAILTHVFDKKISS---TGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVG  154 (357)
T ss_dssp             EEEECSCHHHHHHHHHTTSSCCCCC---CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEEEECCHHHHHHHHHHHhcccccc---CeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence            3455566654443333333322211   1222333444444444433333333333      333333333333 24444


Q ss_pred             CCCEECCCcEE-eceEECCCCEECCCcEE
Q 020813          250 RHCRIGSNVKV-VNSVVMNHVTIGDGCSI  277 (321)
Q Consensus       250 ~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I  277 (321)
                      ++|.|+++++| .+++|+++|.|++++.|
T Consensus       155 ~~~~I~~~~~I~~~~~IG~~~~I~~g~~I  183 (357)
T 4e79_A          155 KDCFIDSYVTITGSSKLRDRVRIHSSTVI  183 (357)
T ss_dssp             SSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CCCEECCCcEEecccEEEeEeeccCCeEE
Confidence            44444444444 24555555555555555

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.59  E-value=4.1e-15  Score=137.45  Aligned_cols=137  Identities=18%  Similarity=0.251  Sum_probs=98.0

Q ss_pred             eeeccCHHHHHHHchhhccccccC------CCcccccC-CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECC
Q 020813          178 CVRLNSIQAFMDINRDVIGEANHL------SGYNFSAQ-NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR  250 (321)
Q Consensus       178 w~~i~t~~~y~~~~~~~l~~~~~~------~~~~~~~~-~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~  250 (321)
                      ..|+..+++|-.+....++++...      ....+... +..+++++.|++++.|++++.|+++|+|+++|.|.+|+|++
T Consensus        26 l~ri~al~~f~~v~~g~lgg~i~~e~nl~~~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~  105 (334)
T 2pig_A           26 LRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISD  105 (334)
T ss_dssp             EEEEEESSCBTTBCTTCEEEEESSTTSBCSSSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEES
T ss_pred             EEEEEEeeccccccCCccCCeEeccCCcccCCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcC
Confidence            457777777777777766654321      22234455 66777788888889999999999999999999999999999


Q ss_pred             CCEECCCcEEeceEECCCCEECCCc----------------------------EEeceEECCCCEECcCcEecCeEECCC
Q 020813          251 HCRIGSNVKVVNSVVMNHVTIGDGC----------------------------SIQGSVICSNAQLQERVALKDCQVGQG  302 (321)
Q Consensus       251 ~~~Ig~~~~I~~siI~~~v~Ig~~~----------------------------~I~~~iI~~~~~Ig~~~~i~~~iIg~~  302 (321)
                      ++.|+++++|.+++|++++.|+.++                            .|.+++|+++|.|+.++.|.+++|+++
T Consensus       106 ~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~  185 (334)
T 2pig_A          106 GARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHR  185 (334)
T ss_dssp             SCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEEECTT
T ss_pred             CCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCC
Confidence            9999999999888766666544444                            444555666666666666666666666


Q ss_pred             cEEcCCcEEcCC
Q 020813          303 YVVSAGCEYKGE  314 (321)
Q Consensus       303 ~~V~~~~~i~~~  314 (321)
                      +.|++++.+.+.
T Consensus       186 a~I~~~a~V~~~  197 (334)
T 2pig_A          186 AEVFDFALIEGD  197 (334)
T ss_dssp             CEECTTCEEECC
T ss_pred             CEECCCcEECCc
Confidence            666666665543

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.58  E-value=2.1e-14  Score=127.63  Aligned_cols=101  Identities=14%  Similarity=0.284  Sum_probs=54.8

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-----eEECCCCEECCCcEEe------------------------
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVV------------------------  261 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-----svIg~~~~Ig~~~~I~------------------------  261 (321)
                      ..|++++.|++++.+.+++.||++|.|+++|.|..     .+||++|.|+++|.|.                        
T Consensus        60 ~~I~~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~  139 (247)
T 1qre_A           60 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY  139 (247)
T ss_dssp             CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred             cEECCCcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccC
Confidence            33445555555454444555555555555555543     2566666666666554                        


Q ss_pred             ceEECCCCEECCCcEEec-eEECCCCEECcCcEecCeEECCCcEEcCCcEE
Q 020813          262 NSVVMNHVTIGDGCSIQG-SVICSNAQLQERVALKDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~~-~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i  311 (321)
                      +++|+++|.||++|.|.+ ++|+++|.||+++.|.++.||++++|++++.+
T Consensus       140 ~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV  190 (247)
T 1qre_A          140 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAA  190 (247)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred             ceEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEE
Confidence            255666666666666654 66666666666665544555555555554444

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.58  E-value=6.7e-14  Score=119.89  Aligned_cols=125  Identities=12%  Similarity=0.154  Sum_probs=88.0

Q ss_pred             ceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEEC--CCCEECCCCEECCCCeEeceEECCCCEE
Q 020813          177 YCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRI  254 (321)
Q Consensus       177 ~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~--~~~~Ig~~~~I~~~~~I~~svIg~~~~I  254 (321)
                      +...++++..+++....+......        ...+++|++.+++++.|+  ++++|+++++|+.++     .||++|.|
T Consensus        50 ~~iaig~~~~r~~~~~~l~~~~~~--------~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~-----~IG~~~~I  116 (194)
T 3bfp_A           50 FFIAIGNNEIRKKIYQKISENGFK--------IVNLIHKSALISPSAIVEENAGILIMPYVVINAKA-----KIEKGVIL  116 (194)
T ss_dssp             EEECCCCHHHHHHHHHHHHTTTCC--------BCCEECTTCEECTTCEECTTSCCEECTTCEECTTC-----EECTTCEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCc--------cccccCCeEEECCCceeCCCCCcEEcCCCEECCCC-----EECCCCEE
Confidence            344566666555555444332211        134667777777777777  777777776666554     77788888


Q ss_pred             CCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          255 GSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       255 g~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      ++++.|. ++.|++++.|++++.|. +++|++++.||.+++|. ++.||++++|++++.+...
T Consensus       117 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~  179 (194)
T 3bfp_A          117 NTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN  179 (194)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc
Confidence            8888776 77888888888888887 48888888888888764 7888888888888877653

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.58  E-value=4e-14  Score=128.39  Aligned_cols=50  Identities=12%  Similarity=0.090  Sum_probs=21.3

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      ++|++++.|+.++.|. +++|++++.|+.++.+. ++.||++++|+.++.+.
T Consensus       126 ~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~  177 (283)
T 4eqy_A          126 TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVH  177 (283)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEc
Confidence            3444444444444442 44444444444444443 24444444444443333

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.57  E-value=5.2e-14  Score=126.69  Aligned_cols=107  Identities=13%  Similarity=0.238  Sum_probs=70.4

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec---------------eEECCCCEECCCcEEe-ceEECCCCEEC
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR---------------SVIGRHCRIGSNVKVV-NSVVMNHVTIG  272 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~---------------svIg~~~~Ig~~~~I~-~siI~~~v~Ig  272 (321)
                      .++.|.+++.|++++.|++++.||++|.|+++|.|..               ++||++|.|++++.|. +++|++++.||
T Consensus        19 ~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig   98 (273)
T 3fs8_A           19 ENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTIIGDNFQTG   98 (273)
T ss_dssp             SSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred             CCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCEECCCCEEC
Confidence            3444455555555555555555555566666655543               6778888888888773 77788888888


Q ss_pred             CCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCCe
Q 020813          273 DGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       273 ~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~~  315 (321)
                      +++.|. +++|++++.|+.++.+. +++||+++.|++++.+...+
T Consensus        99 ~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~  143 (273)
T 3fs8_A           99 HKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKS  143 (273)
T ss_dssp             SSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTC
T ss_pred             CceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCc
Confidence            888886 78888888887777764 56666666666655555433

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.57  E-value=6.1e-14  Score=125.63  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=14.9

Q ss_pred             CEECCCCEECCCCeEe-ceEECCCCEECCCcEEe
Q 020813          229 CMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~  261 (321)
                      +.||++|.|++++.|. ++.||++|.|++++.|.
T Consensus        36 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~   69 (262)
T 2qia_A           36 VEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIG   69 (262)
T ss_dssp             EEECTTCEECSSCEECSEEEECSSCEECTTCEEE
T ss_pred             CEECCCcEECCCCEECCCcEECCCCEEecceEEC
Confidence            3333333333333343 24555555555555553

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.57  E-value=7.1e-14  Score=125.61  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=38.9

Q ss_pred             ceEECCCCEECCCcEEec--------eEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          245 RSVIGRHCRIGSNVKVVN--------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       245 ~svIg~~~~Ig~~~~I~~--------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      +++||++|.|++++.|..        ++|++++.|+.++.|. +++|++++.|+.++.+. ++.||++++|+.++.+.+.
T Consensus        83 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~  162 (266)
T 3r0s_A           83 GVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQF  162 (266)
T ss_dssp             EEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             eEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCC
Confidence            456666666666666643        5566666666666553 55666666666555554 3455555554444444443

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.57  E-value=4.2e-14  Score=125.77  Aligned_cols=85  Identities=20%  Similarity=0.280  Sum_probs=76.4

Q ss_pred             EECCCCEECCCCeEe------------------------ceEECCCCEECCCcEEec-eEECCCCEECCCcEEeceEECC
Q 020813          230 MLGEGSQMGDKCSVK------------------------RSVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQGSVICS  284 (321)
Q Consensus       230 ~Ig~~~~I~~~~~I~------------------------~svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~~iI~~  284 (321)
                      .||++|.|+++|.|.                        +++||++|.|+++|.|.+ ++|+++|.||.++.|.+++|++
T Consensus       101 ~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~  180 (247)
T 1qre_A          101 FVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN  180 (247)
T ss_dssp             EECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECT
T ss_pred             EECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECC
Confidence            677777777777775                        389999999999999998 8999999999999998899999


Q ss_pred             CCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          285 NAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       285 ~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      ++.|++++++.++.|+++++|++++.+.+.
T Consensus       181 ~~~IgagsvV~~~~I~~~~~v~~g~vv~~~  210 (247)
T 1qre_A          181 NCVLEPRSAAIGVTIPDGRYIPAGMVVTSQ  210 (247)
T ss_dssp             TCEECTTCEEESCEECTTBEECTTCEECSH
T ss_pred             CCEECCCCEECCeEeCCCCEECCCCEEecC
Confidence            999999999988999999999999988654

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.57  E-value=1.2e-13  Score=128.52  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=26.4

Q ss_pred             eEECCCCEECCCcEE-eceEECCCCEECCCcEE--------------------eceEECCCCEECcCcEe
Q 020813          246 SVIGRHCRIGSNVKV-VNSVVMNHVTIGDGCSI--------------------QGSVICSNAQLQERVAL  294 (321)
Q Consensus       246 svIg~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I--------------------~~~iI~~~~~Ig~~~~i  294 (321)
                      +.||++|.|+++++| .++.|+++|.|++++.|                    ++++||+++.||+++.|
T Consensus       146 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I  215 (341)
T 3eh0_A          146 SKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTI  215 (341)
T ss_dssp             CEECTTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEE
T ss_pred             CEECCCcEECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEe
Confidence            444444444444444 35555666666666555                    23556666666665555

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.56  E-value=6.8e-14  Score=125.60  Aligned_cols=66  Identities=12%  Similarity=0.186  Sum_probs=32.0

Q ss_pred             eEECCCCEECCCcEEe--------ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813          246 SVIGRHCRIGSNVKVV--------NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  311 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~--------~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i  311 (321)
                      ++||++|.|++++.|.        +++|++++.|++++.|. +++|++++.|+.++.+. +++||++++|+.++.+
T Consensus        86 ~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V  161 (265)
T 4e6u_A           86 LEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGI  161 (265)
T ss_dssp             EEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             EEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEE
Confidence            4555555555555554        24455555555555552 45555555555555443 2444444444443333

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.56  E-value=7.8e-14  Score=125.64  Aligned_cols=46  Identities=17%  Similarity=0.374  Sum_probs=21.6

Q ss_pred             CCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEE
Q 020813          215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKV  260 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I  260 (321)
                      +++.|++++.|++++.||++|.|++++.|. +++||++|.|++++.|
T Consensus        18 ~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I   64 (270)
T 1j2z_A           18 KGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL   64 (270)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred             CCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence            333333333444444444444444444444 3555555555555555

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.56  E-value=1e-13  Score=124.56  Aligned_cols=65  Identities=11%  Similarity=0.242  Sum_probs=27.3

Q ss_pred             eEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcE
Q 020813          246 SVIGRHCRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCE  310 (321)
Q Consensus       246 svIg~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~  310 (321)
                      ++||++|.|+.++.| .++.|+++|.|+.++.+. +++|++++.||.++.|. ++.||++++|++++.
T Consensus       109 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~  176 (266)
T 3r0s_A          109 TRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASA  176 (266)
T ss_dssp             EEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCB
T ss_pred             EEECCCceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCe
Confidence            344444444444444 234444444444444443 34444444444444332 344444444444433

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.55  E-value=1.4e-13  Score=120.13  Aligned_cols=124  Identities=18%  Similarity=0.213  Sum_probs=77.8

Q ss_pred             ceeeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECC
Q 020813          177 YCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGS  256 (321)
Q Consensus       177 ~w~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~  256 (321)
                      ++..+++.....+....+......        ...+++|.+.+.+++.+++++.|+++++|+.++     .||++|.|+.
T Consensus        74 v~iAIg~~~~R~~i~~~l~~~g~~--------~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~-----~IG~~~~I~~  140 (220)
T 4ea9_A           74 LFVAIGDNRLRQKLGRKARDHGFS--------LVNAIHPSAVVSPSVRLGEGVAVMAGVAINADS-----WIGDLAIINT  140 (220)
T ss_dssp             EEECCCCHHHHHHHHHHHHHTTCE--------ECCEECTTCEECTTCEECSSCEECTTCEECTTC-----EECTTCEECT
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCC--------cCCcCCCCCEECCCCEECCCCEEcCCCEECCCC-----EECCCCEECC
Confidence            345566655555544444332211        123556666666666666666666666665544     6666666666


Q ss_pred             CcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          257 NVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       257 ~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++.|. +++|+++|.|++++.|. +++|++++.||++++|. ++.||++++|++++.+..
T Consensus       141 ~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~  200 (220)
T 4ea9_A          141 GAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVR  200 (220)
T ss_dssp             TCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcc
Confidence            66665 56777777777777776 47777777777777664 677777777777777654

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.55  E-value=1.1e-13  Score=123.78  Aligned_cols=85  Identities=13%  Similarity=0.178  Sum_probs=43.5

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeE-------------e-ceEECCCCEECCCcEEe-------ceEECC
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-------------K-RSVIGRHCRIGSNVKVV-------NSVVMN  267 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I-------------~-~svIg~~~~Ig~~~~I~-------~siI~~  267 (321)
                      .+..|++++.|++++.|.+++.||++|.|+.++.|             . +++||++|.|++++.|.       .+.|++
T Consensus        29 ~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~  108 (259)
T 3hsq_A           29 GNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGN  108 (259)
T ss_dssp             SSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECS
T ss_pred             CCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcEEECC
Confidence            33444444444444444444555555555555555             2 35666667666666665       445555


Q ss_pred             CCEECCCcEEe-ceEECCCCEECcCcE
Q 020813          268 HVTIGDGCSIQ-GSVICSNAQLQERVA  293 (321)
Q Consensus       268 ~v~Ig~~~~I~-~~iI~~~~~Ig~~~~  293 (321)
                      ++.|++++.|. ++.|++++.|+.++.
T Consensus       109 ~~~I~~~~~I~~~~~IG~~~~i~~~~~  135 (259)
T 3hsq_A          109 KNYFMGNSHVGHDCILGNNNILTHGAV  135 (259)
T ss_dssp             SCEECTTCEECTTCEECSSCEECTTCE
T ss_pred             CcEEcCCcEECCCcEECCccEEcCCce
Confidence            55544444443 344444444443333

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.55  E-value=1.5e-13  Score=122.94  Aligned_cols=98  Identities=19%  Similarity=0.361  Sum_probs=57.6

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEE--------------eceEECCCCEECCCc
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKV--------------VNSVVMNHVTIGDGC  275 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I--------------~~siI~~~v~Ig~~~  275 (321)
                      +.|++++.|++.+.|++++.||++|.|++++.|.. +.||++|.|++++.|              .+++|++++.|+++|
T Consensus        13 a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~   92 (259)
T 3hsq_A           13 AELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYS   92 (259)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCC
Confidence            33344444444444444555555555555555554 777777777777777              356677777777777


Q ss_pred             EEe-------ceEECCCCEECcCcEec-CeEECCCcEEcCC
Q 020813          276 SIQ-------GSVICSNAQLQERVALK-DCQVGQGYVVSAG  308 (321)
Q Consensus       276 ~I~-------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~  308 (321)
                      .|.       .++||+++.|++++.|. +|.||+++.++++
T Consensus        93 ~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~  133 (259)
T 3hsq_A           93 NIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHG  133 (259)
T ss_dssp             EEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred             EECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCC
Confidence            776       56666666666666553 4444444333333

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.55  E-value=9.4e-14  Score=118.56  Aligned_cols=80  Identities=23%  Similarity=0.322  Sum_probs=59.0

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEec-eEECCCCEECCCcEEe-ceEECCCCE
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQ-GSVICSNAQ  287 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~-~~iI~~~~~  287 (321)
                      +++|+|+|.|++++.|++++.|++++.|+.++     .||++|.|++++.|.+ +.|+++|.|++++.|. ++.|++++.
T Consensus         3 ~~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~-----~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~   77 (192)
T 3mqg_A            3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGA-----EIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVF   77 (192)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTC-----EECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCE
T ss_pred             CCEECCCcEECCCCEECCCCEECCCCEECCCc-----EECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCE
Confidence            56778888887777777777777777776665     6777777777777764 7788888888888885 777887777


Q ss_pred             ECcCcEe
Q 020813          288 LQERVAL  294 (321)
Q Consensus       288 Ig~~~~i  294 (321)
                      |++++.+
T Consensus        78 ig~~~~~   84 (192)
T 3mqg_A           78 CGPSMVF   84 (192)
T ss_dssp             ECTTCBC
T ss_pred             ECCceEE
Confidence            7666544

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.54  E-value=8.9e-14  Score=126.10  Aligned_cols=67  Identities=13%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             eEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          246 SVIGRHCRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       246 svIg~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      ++||++|.|+.++.| .+++|+++|.|+.++.+. +++|++++.||.++.|. ++.||++++|++++.+.
T Consensus       126 ~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~  195 (283)
T 4eqy_A          126 TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALV  195 (283)
T ss_dssp             EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEe
Confidence            444444444444444 344444444444444444 34555555555554443 44444444444444443

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.54  E-value=1.6e-13  Score=123.14  Aligned_cols=82  Identities=13%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             CCCCEECCCCeEe--------ceEECCCCEECCCcEE-eceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEEC
Q 020813          232 GEGSQMGDKCSVK--------RSVIGRHCRIGSNVKV-VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVG  300 (321)
Q Consensus       232 g~~~~I~~~~~I~--------~svIg~~~~Ig~~~~I-~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg  300 (321)
                      |+++.|++++.|.        +++||++|.|+.++.| .+++|+++|.|+.++.+. +++|++++.||.++.|. ++.||
T Consensus        89 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig  168 (265)
T 4e6u_A           89 GNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFCKID  168 (265)
T ss_dssp             CSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred             CCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEcCCcEECCCcEECCCeEEcCCCEECCCcEEC
Confidence            4444444455554        2566666666666666 355666666666666665 46666666666666554 55666


Q ss_pred             CCcEEcCCcEEcC
Q 020813          301 QGYVVSAGCEYKG  313 (321)
Q Consensus       301 ~~~~V~~~~~i~~  313 (321)
                      ++++|++++.+..
T Consensus       169 ~~~~i~~~svV~~  181 (265)
T 4e6u_A          169 SYSMIGGASLILK  181 (265)
T ss_dssp             TTCEECTTCEECS
T ss_pred             CCCEEcCCCEEcc
Confidence            6666666655543

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.53  E-value=1.6e-13  Score=123.54  Aligned_cols=98  Identities=14%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             CCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEec---------------eEECCCCEECCCcEEe-
Q 020813          216 SAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------------SVVMNHVTIGDGCSIQ-  278 (321)
Q Consensus       216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~---------------siI~~~v~Ig~~~~I~-  278 (321)
                      ++.|++++.|++++.|+++|.|+++|.|.. ++||++|.|++++.|.+               ++|++++.|++++.|. 
T Consensus         8 ~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~   87 (273)
T 3fs8_A            8 SAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYG   87 (273)
T ss_dssp             TCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEES
T ss_pred             CeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeC
Confidence            333333333333333333333333333332 46666666666666653               5677777777777774 


Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +++|++++.|+.++.|. ++.||+++.|++++.+..
T Consensus        88 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~  123 (273)
T 3fs8_A           88 DTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQH  123 (273)
T ss_dssp             SCEECTTCEECSSCEECSSCEECSSCEECTTCEECS
T ss_pred             CCEECCCCEECCceEECCCCEECCCCEECccceeCC
Confidence            67777777777666664 566666555555554443

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.53  E-value=2.5e-13  Score=127.71  Aligned_cols=16  Identities=25%  Similarity=0.430  Sum_probs=8.8

Q ss_pred             ceEECCCCEECCCcEE
Q 020813          262 NSVVMNHVTIGDGCSI  277 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I  277 (321)
                      +++|+++|.||+++.|
T Consensus       222 ~v~IGd~v~IGa~~~I  237 (372)
T 3pmo_A          222 GVTIGDDVEIGANTTI  237 (372)
T ss_dssp             CEEECSSCEECTTCEE
T ss_pred             CeEECCCCEECCCcEE
Confidence            3455555555555555

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.51  E-value=3.3e-13  Score=125.53  Aligned_cols=15  Identities=27%  Similarity=0.470  Sum_probs=8.2

Q ss_pred             eEECCCCEECCCcEE
Q 020813          263 SVVMNHVTIGDGCSI  277 (321)
Q Consensus       263 siI~~~v~Ig~~~~I  277 (321)
                      ++|+++|.||+++.|
T Consensus       201 v~IGd~v~Ig~~~~I  215 (341)
T 3eh0_A          201 VIIGDRVEIGACTTI  215 (341)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             EEECCCcEECCccEe
Confidence            455555555555555

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.51  E-value=1.5e-13  Score=126.12  Aligned_cols=118  Identities=16%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             ceeeccCHHHHHHHchhhccccc--c-CCC----------cccccCCeeeCCCCeeCCCcEECCCCE-----ECCCCEEC
Q 020813          177 YCVRLNSIQAFMDINRDVIGEAN--H-LSG----------YNFSAQNNIIHPSAELGSKTTVGPHCM-----LGEGSQMG  238 (321)
Q Consensus       177 ~w~~i~t~~~y~~~~~~~l~~~~--~-~~~----------~~~~~~~~~i~p~a~i~~~~~i~~~~~-----Ig~~~~I~  238 (321)
                      -|.+.+.+..|......++....  . +..          ..+...+..|+|++.|+.++.|++++.     |+.++.||
T Consensus        99 ~w~k~~ill~f~~~~~~~i~~~~~~~~~dkv~~k~~~~~~~~~~~~~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG  178 (316)
T 3tk8_A           99 QWLKKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVD  178 (316)
T ss_dssp             HHHHHHHHHHHHTCCCEEEEBSBSCEEEESSCBTTTTCCHHHHHHHCCEECTTCEEBTTCEECTTCEECSEEECTTCEEC
T ss_pred             HHHHHHHHHhhhhcccccccCCCceeeEecccchhcccChhheecCCcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEEC
Confidence            46666777666665554443322  0 000          011122445566666655555555553     34466666


Q ss_pred             CCCeEec-eEECCCCEECCCcEEe-ceEECC--------CCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          239 DKCSVKR-SVIGRHCRIGSNVKVV-NSVVMN--------HVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       239 ~~~~I~~-svIg~~~~Ig~~~~I~-~siI~~--------~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++|.|.. ++||++|.||++|.|. ++.|+.        +++||++|+|+ +|+|+++++||++++|
T Consensus       179 ~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vI  245 (316)
T 3tk8_A          179 EGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVI  245 (316)
T ss_dssp             TTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEE
Confidence            6666655 5666666666666554 233333        34444444444 4444444444433333

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.50  E-value=3.4e-13  Score=121.44  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeE-------------eceEECCCCEECCCcEEe--------ceEECCCCE
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-------------KRSVIGRHCRIGSNVKVV--------NSVVMNHVT  270 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I-------------~~svIg~~~~Ig~~~~I~--------~siI~~~v~  270 (321)
                      .|+++++|++++.|.+++.||++|.|+.++.|             .+++||++|.|+++++|.        .+.|++++.
T Consensus        33 ~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~  112 (270)
T 1j2z_A           33 KLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNL  112 (270)
T ss_dssp             EECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCE
T ss_pred             EECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEECCCCEECCCeEEcCCeecCCccEEECCCcE
Confidence            33333333333444334444444444444444             235556666666666554        244555444


Q ss_pred             ECCCcEEe-ceEECCCCEECcC
Q 020813          271 IGDGCSIQ-GSVICSNAQLQER  291 (321)
Q Consensus       271 Ig~~~~I~-~~iI~~~~~Ig~~  291 (321)
                      |++++.|. +++|++++.|+.+
T Consensus       113 I~~~~~I~~~~~IG~~~~I~~~  134 (270)
T 1j2z_A          113 LMAYVHVAHDCVIGSHCILANG  134 (270)
T ss_dssp             ECTTCEECTTCEECSSCEECTT
T ss_pred             ECcccccCCCcEECCCcEEcCC
Confidence            44444443 3444443333333

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.50  E-value=4.2e-13  Score=122.91  Aligned_cols=14  Identities=36%  Similarity=0.451  Sum_probs=5.4

Q ss_pred             EECCCCEECCCcEE
Q 020813          247 VIGRHCRIGSNVKV  260 (321)
Q Consensus       247 vIg~~~~Ig~~~~I  260 (321)
                      +||++|.|++++.|
T Consensus        79 ~IG~~~~Ig~~a~I   92 (305)
T 3t57_A           79 FIGCNNIIGHHAVV   92 (305)
T ss_dssp             EECSSCEECTTCEE
T ss_pred             EECCceEECCccEe
Confidence            33333333333333

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.50  E-value=4.2e-13  Score=125.54  Aligned_cols=13  Identities=15%  Similarity=0.245  Sum_probs=8.9

Q ss_pred             cceEEeEeHHHHH
Q 020813           74 DAHMYAFNRSVLQ   86 (321)
Q Consensus        74 d~giYi~~~~vl~   86 (321)
                      .+++.+++++...
T Consensus        59 ~a~~~i~~~~~~~   71 (357)
T 4e79_A           59 RAGAYIVTAALKE   71 (357)
T ss_dssp             CCSEEEECHHHHH
T ss_pred             CCEEEEEcHHHhh
Confidence            4577888887553

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.50  E-value=1.2e-13  Score=124.63  Aligned_cols=32  Identities=9%  Similarity=0.315  Sum_probs=14.1

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++|+++|.||.+|.|. +++||+++.||+|++|
T Consensus       178 v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV  210 (276)
T 3gos_A          178 TIIEDNCFVGARSEVVEGVIVEEGSVISMGVFI  210 (276)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            3444444444444443 4444444444444443

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.50  E-value=5e-13  Score=119.68  Aligned_cols=88  Identities=19%  Similarity=0.210  Sum_probs=51.6

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-------------ceEECCCCEECCCcEEec--------eEE
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-------------RSVIGRHCRIGSNVKVVN--------SVV  265 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-------------~svIg~~~~Ig~~~~I~~--------siI  265 (321)
                      +..+..|++++.|++++.|.+++.||++|.|++++.|.             +++||++|.|++++.|..        ++|
T Consensus        32 I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~I  111 (262)
T 2qia_A           32 VGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKV  111 (262)
T ss_dssp             ECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEE
T ss_pred             ECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEE
Confidence            33344455555555555555555566666666666664             467777777777777753        666


Q ss_pred             CCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          266 MNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       266 ~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++++.|++++.|. ++.|++++.|+.++.+
T Consensus       112 G~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i  141 (262)
T 2qia_A          112 GSDNLLMINAHIAHDCTVGNRCILANNATL  141 (262)
T ss_dssp             CSSCEECTTCEECTTCEECSSCEECTTCEE
T ss_pred             CCCcEEeeeeEECCCCEECCCeEECCcccc
Confidence            6666666666663 5555555444444433

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.49  E-value=1.2e-13  Score=126.22  Aligned_cols=83  Identities=16%  Similarity=0.332  Sum_probs=47.4

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe------c-eEECCCCEECCCcEEec---------eEECCCCEECCCc
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK------R-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGC  275 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~------~-svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~  275 (321)
                      .|.+++.|++++.|+++ +|+.++.||++|.|.      + +.||++|.|+.++.|.+         ++|+++|.||.+|
T Consensus       137 ~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a  215 (304)
T 3eg4_A          137 IVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARS  215 (304)
T ss_dssp             EEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTC
T ss_pred             EECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCC
Confidence            33344444444444332 333344444444443      3 45555555555555544         6777777777777


Q ss_pred             EEe-ceEECCCCEECcCcEec
Q 020813          276 SIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       276 ~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      .|. +++||+++.||++++|.
T Consensus       216 ~I~~gv~IG~~avIgagsvV~  236 (304)
T 3eg4_A          216 EVVEGCIVREGSVLGMGVFIG  236 (304)
T ss_dssp             EECTTCEECTTCEECTTCEEC
T ss_pred             EEcCCcEECCCcEECCCCEEc
Confidence            665 77777777777777775

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.49  E-value=8.2e-14  Score=126.55  Aligned_cols=102  Identities=15%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             CCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec---------
Q 020813          209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG---------  279 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~---------  279 (321)
                      .+..|+|.+.|..++.|++++.|++++.|+.+     +.||++|.|..++.+. ++|+++|.|+++|.|.+         
T Consensus       183 ~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~n-----a~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~~  256 (347)
T 3r5d_A          183 AGVRIADTARVRLGAYIGEGTTVMHEGFVNFN-----AGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNIV  256 (347)
T ss_dssp             TTEEESSGGGBBTTEEECTTEEECTTCEECTT-----EEESSSEEECSEECTT-CEECTTEEECTTCEECC------CCC
T ss_pred             CCcEECCcCEECCCCEECCCCEECCCCEECCC-----CEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCCCccc
Confidence            34555555555555555555555555555444     3566666666666554 88999999999999975         


Q ss_pred             eEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCeEe
Q 020813          280 SVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGESLA  317 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~~~  317 (321)
                      ++||++|.||+|++| ++.||++++|++|+++...+.+
T Consensus       257 V~IGdnv~IGAnAtI-GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          257 ISVGEGCLIGANAGI-GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             CEECTTCEECTTCEE-CSCBCTTCEECTTCEECTTCEE
T ss_pred             eEECCCCEECCCCEE-eeEECCCCEECCCCEECCCCEE
Confidence            799999999999999 8888888888888888776554

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.48  E-value=3.7e-13  Score=113.07  Aligned_cols=101  Identities=13%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             CeeeCCCCeeCCCcEECCC---CEECCCCEECCCCeEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ce
Q 020813          210 NNIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GS  280 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~  280 (321)
                      +..|++++.|++++.|..+   +.||++|.|+++|.|.     +++||++|.|++++.|.+++|+++|.||.++.|. ++
T Consensus        30 ~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~  109 (173)
T 1xhd_A           30 DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGA  109 (173)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTC
T ss_pred             CEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCCC
Confidence            3445555555555555433   6688889999999887     7999999999999999999999999999999987 79


Q ss_pred             EECCCCEECcCcEec-CeEECCCcEE-cCCcE
Q 020813          281 VICSNAQLQERVALK-DCQVGQGYVV-SAGCE  310 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~-~~iIg~~~~V-~~~~~  310 (321)
                      +|++++.|++++.+. +..|++++++ +..++
T Consensus       110 ~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~  141 (173)
T 1xhd_A          110 EIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAK  141 (173)
T ss_dssp             EECTTCEECTTCEECTTCEECTTEEEEETTEE
T ss_pred             EECCCCEECCCCEECCCcEeCCCCEEECCCCE
Confidence            999999999888775 4666776666 44343

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.48  E-value=4.8e-13  Score=122.21  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             CCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEec-eEECCCCEECCCcEEec---------eEECC
Q 020813          216 SAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN-SVVMNHVTIGDGCSIQG---------SVICS  284 (321)
Q Consensus       216 ~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~-siI~~~v~Ig~~~~I~~---------~iI~~  284 (321)
                      ++.|++++.|++++.|+++|.|+.+ .|. ++.||++|.|+.++.|++ +.|+++|.|+.++.|.+         ++|++
T Consensus       129 g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd  207 (304)
T 3eg4_A          129 GFRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIED  207 (304)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECT
T ss_pred             CcEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcC
Confidence            3444444444444444444444443 222 246677777777677664 77888888888888876         89999


Q ss_pred             CCEECcCcEe-cCeEECCCcEEcCCcEEcCCeEe
Q 020813          285 NAQLQERVAL-KDCQVGQGYVVSAGCEYKGESLA  317 (321)
Q Consensus       285 ~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~~~~~  317 (321)
                      +|.||++++| .+++||++++|++++.+.+.+.+
T Consensus       208 ~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~I  241 (304)
T 3eg4_A          208 NCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKI  241 (304)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCCE
T ss_pred             CCEECCCCEEcCCcEECCCcEECCCCEEcCCeEE
Confidence            9999999966 58888988888888888765433

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.48  E-value=3e-13  Score=113.66  Aligned_cols=100  Identities=19%  Similarity=0.227  Sum_probs=78.4

Q ss_pred             eeeCCCCeeCCCcEECCC---CEECCCCEECCCCeEe-----ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceE
Q 020813          211 NIIHPSAELGSKTTVGPH---CMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSV  281 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~---~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~i  281 (321)
                      ..|++++.|++++.+..+   +.||++|.|+++|.|.     +++||++|.|++++.|.+++|+++|.||.++.|. +++
T Consensus        29 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~  108 (173)
T 1v3w_A           29 VVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAK  108 (173)
T ss_dssp             EEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCE
T ss_pred             EEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCCCE
Confidence            344555555555555432   6778888888888887     5899999999999999999999999999999987 799


Q ss_pred             ECCCCEECcCcEec-CeEECCCcEE-cCCcE
Q 020813          282 ICSNAQLQERVALK-DCQVGQGYVV-SAGCE  310 (321)
Q Consensus       282 I~~~~~Ig~~~~i~-~~iIg~~~~V-~~~~~  310 (321)
                      |++++.|++++++. ++.|+++++| +..++
T Consensus       109 Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~  139 (173)
T 1v3w_A          109 IGDHVIIGAGAVVPPNKEIPDYSLVLGVPGK  139 (173)
T ss_dssp             ECSSEEECTTCEECTTCEECTTEEEEETTEE
T ss_pred             ECCCCEECCCCEECCCcEeCCCcEEECcCCE
Confidence            99999999888776 4777777777 44443

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.47  E-value=3.7e-13  Score=114.92  Aligned_cols=75  Identities=24%  Similarity=0.364  Sum_probs=57.7

Q ss_pred             EECCCCEECCCCeEe------ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECC
Q 020813          230 MLGEGSQMGDKCSVK------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQ  301 (321)
Q Consensus       230 ~Ig~~~~I~~~~~I~------~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~  301 (321)
                      .||++|.|+++|.|.      +++||++|.|++++.|.+++|+++|.||.++.|. +++|++++.|++++++. +..|++
T Consensus        74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~  153 (191)
T 3ixc_A           74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKS  153 (191)
T ss_dssp             EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCC
Confidence            447788888888887      7899999999999999999999999999988887 67788877777655544 234444


Q ss_pred             CcE
Q 020813          302 GYV  304 (321)
Q Consensus       302 ~~~  304 (321)
                      +++
T Consensus       154 ~~~  156 (191)
T 3ixc_A          154 GEL  156 (191)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            443

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.45  E-value=5.5e-13  Score=113.22  Aligned_cols=95  Identities=15%  Similarity=0.305  Sum_probs=71.0

Q ss_pred             CeeeCCCCeeCCCcEECCCC---EECCCCEECCCCeE------------eceEECCCCEECCCcEEeceEECCCCEECCC
Q 020813          210 NNIIHPSAELGSKTTVGPHC---MLGEGSQMGDKCSV------------KRSVIGRHCRIGSNVKVVNSVVMNHVTIGDG  274 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~---~Ig~~~~I~~~~~I------------~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~  274 (321)
                      +..|++++.|++++.|..++   .||++|.|++++.|            .+++||++|.|++++.|.+++|+++|.||.+
T Consensus        33 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~  112 (187)
T 3r3r_A           33 DVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMG  112 (187)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSSEEECTT
T ss_pred             ceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCCCEECCC
Confidence            34444555555555554432   77888888888888            5699999999999999999999999999999


Q ss_pred             cEEe-ceEECCCCEECcCcEec-CeEECCCcE
Q 020813          275 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYV  304 (321)
Q Consensus       275 ~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~  304 (321)
                      +.|. +++|++++.|++++++. +..|+++++
T Consensus       113 ~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~v  144 (187)
T 3r3r_A          113 SIVLDGAIIEDDVMIGAGSLVPQHKRLESGYL  144 (187)
T ss_dssp             CEECTTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred             CEECCCCEECCCCEECCCCEECCCcCcCCCcE
Confidence            9985 78888888888766664 345555544

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.44  E-value=1.3e-12  Score=117.93  Aligned_cols=61  Identities=20%  Similarity=0.341  Sum_probs=27.0

Q ss_pred             CCEECCCCeEe-ceEECCCCEECCCcEEe-ceEECC--------CCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          234 GSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMN--------HVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       234 ~~~I~~~~~I~-~svIg~~~~Ig~~~~I~-~siI~~--------~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      ++.||++|.|. +++||++|.||++|.|. ++.|..        +++||++|+|+ +|+|.++++||++++|
T Consensus       133 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avI  204 (276)
T 3gos_A          133 GAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVI  204 (276)
T ss_dssp             TCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence            44444444444 24444444444444443 223322        34455555554 4444444444444443

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.44  E-value=1.1e-12  Score=115.91  Aligned_cols=88  Identities=19%  Similarity=0.388  Sum_probs=59.3

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEec---------eEECCCCEECCCcEE-e
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSI-Q  278 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I-~  278 (321)
                      ++.|++++.|+.++.|+.++.||++|.|+.++.|. +++||++|.|++++.+.+         ++|+++|.||.+|.| .
T Consensus       103 ~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~  182 (240)
T 3r8y_A          103 HVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLE  182 (240)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECT
T ss_pred             CcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECC
Confidence            34444444444444454555555555555555554 477777777777777766         788888888888888 4


Q ss_pred             ceEECCCCEECcCcEecCe
Q 020813          279 GSVICSNAQLQERVALKDC  297 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~~~  297 (321)
                      +++||+++.|++++++.+.
T Consensus       183 ~~~Ig~~~~I~~gsvV~~~  201 (240)
T 3r8y_A          183 GVTVGKGAVVAAGAVVTED  201 (240)
T ss_dssp             TCEECTTCEECTTCEECSC
T ss_pred             CcEECCCCEECCCCEECCC
Confidence            8888888888887777643

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.44  E-value=3.9e-13  Score=121.28  Aligned_cols=99  Identities=17%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEec---------e
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQG---------S  280 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~---------~  280 (321)
                      +..|+|.|.|.+++.|++++.|++++.|+.++     .|+.+|.|...+.+ ++.|+++|.|+.++.|.+         +
T Consensus       161 gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga-----~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~~~~~~V  234 (332)
T 3fsy_A          161 GVRIADADRVRLGAHLAPGTTVMHEGFVNYNA-----GTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSGGGTHVI  234 (332)
T ss_dssp             TCEESCGGGBBTTEEECTTCEECTTCEECTTE-----EESSCCEECSEECT-TCEECTTCEECTTCEECSBCC---CCBC
T ss_pred             CcEECCcCEECCCCEECCCCEEccccEEEECC-----eECcCCEECCceec-ceEECCCCEECCCCEEcCCCCCCCccce
Confidence            34445555554444444444444444443332     33444444333222 255666666666666653         6


Q ss_pred             EECCCCEECcCcEecCeEECCCcEEcCCcEEcCCe
Q 020813          281 VICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~  315 (321)
                      +||++|.||+|++| ++.||++++|++|+++...+
T Consensus       235 ~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtkdt  268 (332)
T 3fsy_A          235 SIGKRCLLGANSGL-GISLGDDCVVEAGLYVTAGT  268 (332)
T ss_dssp             EECTTCEECTTCEE-CSCBCSSCEECTTCEECTTC
T ss_pred             EECCCCEECCCCEE-eeEECCCCEECCCCEECCCC
Confidence            66666666666666 66666666666666655543

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.44  E-value=1.8e-12  Score=110.90  Aligned_cols=94  Identities=23%  Similarity=0.396  Sum_probs=57.0

Q ss_pred             CeeeCCCCeeC--CCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECC
Q 020813          210 NNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICS  284 (321)
Q Consensus       210 ~~~i~p~a~i~--~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~  284 (321)
                      .+.+.+++.|+  +++.|++++.|++++.||++|.|.. ++|+++|.||+++.|. ++.|..+++||++|+|+ +++|.+
T Consensus        81 ~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~  160 (194)
T 3bfp_A           81 SALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLP  160 (194)
T ss_dssp             TCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             eEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECC
Confidence            34555666666  6666666666666666666666643 6666666666666665 45666666666666665 566666


Q ss_pred             CCEECcCcEecCeEECCCcEEcCC
Q 020813          285 NAQLQERVALKDCQVGQGYVVSAG  308 (321)
Q Consensus       285 ~~~Ig~~~~i~~~iIg~~~~V~~~  308 (321)
                      +++||     ++|+||++++|.++
T Consensus       161 ~~~Ig-----~~~~Igagsvv~~~  179 (194)
T 3bfp_A          161 NLSLA-----DDSILGGGATLVKN  179 (194)
T ss_dssp             TCEEC-----TTCEECTTCEECSC
T ss_pred             CCEEC-----CCCEECCCCEEccc
Confidence            66666     34444445544443

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.44  E-value=2.5e-12  Score=121.10  Aligned_cols=17  Identities=0%  Similarity=-0.265  Sum_probs=8.4

Q ss_pred             cccEEEe--cCCccEEEee
Q 020813           27 RYNIIGM--DPTKQFLLHI   43 (321)
Q Consensus        27 ~~~l~~l--D~~~~~~~h~   43 (321)
                      .|.++.|  |+.+++.+|.
T Consensus        18 ~dhiy~m~~~l~~i~~~h~   36 (374)
T 2iu8_A           18 GSHMSQSTYSLEQLADFLK   36 (374)
T ss_dssp             ---CCSCCEEHHHHHHHTT
T ss_pred             ccccccCcCcHHHHHHhhC
Confidence            3456665  6666655554

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.43  E-value=2.7e-12  Score=117.54  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=13.8

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  311 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i  311 (321)
                      ++|++++.||.++.|. ++.||++++|++++.+
T Consensus       169 v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V  201 (305)
T 3t57_A          169 VVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVV  201 (305)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CEECCceEEcCCCEEcCCeEECCCCEEcCCCeE
Confidence            3344444444444332 3444444444444444

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.43  E-value=1.7e-12  Score=113.13  Aligned_cols=78  Identities=21%  Similarity=0.443  Sum_probs=41.4

Q ss_pred             eeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813          212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQL  288 (321)
Q Consensus       212 ~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~I  288 (321)
                      .+.+.+.+++++.|++++.|++++.||++|.|. +++|+++|.||+++.|. ++.|.++++||++|+|+ +++|.++++|
T Consensus       107 ~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~I  186 (220)
T 4ea9_A          107 VVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTI  186 (220)
T ss_dssp             EECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             EECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEE
Confidence            444555555555555555555555555555555 25555555555555554 24455555555555554 4555555555


Q ss_pred             C
Q 020813          289 Q  289 (321)
Q Consensus       289 g  289 (321)
                      |
T Consensus       187 g  187 (220)
T 4ea9_A          187 G  187 (220)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.43  E-value=8.4e-13  Score=113.84  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=63.4

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeE----eceEECCCCEECCCcEE-------------------------
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV----KRSVIGRHCRIGSNVKV-------------------------  260 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I----~~svIg~~~~Ig~~~~I-------------------------  260 (321)
                      +..|++++.|++++.|.+++.||++|.|+.++.|    .+++||++|.|+++|.|                         
T Consensus        52 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~  131 (205)
T 3vbi_A           52 VISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVK  131 (205)
T ss_dssp             GEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCE
T ss_pred             eeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceec
Confidence            4566666677777777667778888888888888    34899999999999999                         


Q ss_pred             -eceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          261 -VNSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       261 -~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                       .+++|+++|.||.+|.|. ++.|++++.|++++++..
T Consensus       132 ~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~  169 (205)
T 3vbi_A          132 TGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKE  169 (205)
T ss_dssp             ECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECS
T ss_pred             cCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECC
Confidence             345666666666666665 666666666666665553

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.43  E-value=1.1e-12  Score=122.31  Aligned_cols=137  Identities=13%  Similarity=0.173  Sum_probs=84.7

Q ss_pred             cCccceeeccC--HHHHHHHchhhcccc--ccCC---------CcccccCCeeeCCCCeeCCCcEECCCCEECCC-CEEC
Q 020813          173 SNSKYCVRLNS--IQAFMDINRDVIGEA--NHLS---------GYNFSAQNNIIHPSAELGSKTTVGPHCMLGEG-SQMG  238 (321)
Q Consensus       173 ~~~~~w~~i~t--~~~y~~~~~~~l~~~--~~~~---------~~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~-~~I~  238 (321)
                      -...||.+.|.  +..|......+....  ..+.         .+........|++++.|+.++.|++++.|+++ +.|+
T Consensus       167 l~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig  246 (387)
T 2rij_A          167 LSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVN  246 (387)
T ss_dssp             SCCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEEC
T ss_pred             CceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEEC
Confidence            35789999998  778877777665322  1110         00111124455555555555555555555553 5555


Q ss_pred             CCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEE----ec-----eEECCCCEECcCcEecCeEECCCcEEcCC
Q 020813          239 DKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI----QG-----SVICSNAQLQERVALKDCQVGQGYVVSAG  308 (321)
Q Consensus       239 ~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I----~~-----~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~  308 (321)
                      .++.    +||+ |.|+.  .|+ +++|+++|.|+.++.|    .+     ++||++|.||++++ .++.||++++|++|
T Consensus       247 ~nv~----vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv-~GV~IGdgavIGAG  318 (387)
T 2rij_A          247 FNAG----TTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV-TGIPLGDNCIVDAG  318 (387)
T ss_dssp             TTCE----ESSC-CEECS--EECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE-ECSCBCTTCEECTT
T ss_pred             CCcE----EECC-EEEee--EECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc-CCcEECCCCEECCC
Confidence            4442    1555 55542  443 4567777777777754    32     78999999999988 88888888888888


Q ss_pred             cEEcCCeEe
Q 020813          309 CEYKGESLA  317 (321)
Q Consensus       309 ~~i~~~~~~  317 (321)
                      +.+...+-+
T Consensus       319 sVVt~dv~i  327 (387)
T 2rij_A          319 IAVLEGTKF  327 (387)
T ss_dssp             CEECTTCEE
T ss_pred             CEECCCcee
Confidence            888776543

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.43  E-value=8.6e-13  Score=127.42  Aligned_cols=86  Identities=15%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             CEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEE-----------------eceEECCCCEECc
Q 020813          229 CMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSI-----------------QGSVICSNAQLQE  290 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I-----------------~~~iI~~~~~Ig~  290 (321)
                      +.||++|.|+ ++.|.+++||++|.|++++.|. +++|++++.||+++.|                 +++.|++++.||+
T Consensus       310 ~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~  388 (468)
T 1hm9_A          310 STIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGA  388 (468)
T ss_dssp             CEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCEECTTCEEEEEEEEESEEECTTCEECT
T ss_pred             cEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeEEcCCcEeCCceEEccccccCCcEECC
Confidence            3445555555 5555666777777777777776 6666666666555444                 3456777777777


Q ss_pred             CcEec--------CeEECCCcEEcCCcEEcCCe
Q 020813          291 RVALK--------DCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       291 ~~~i~--------~~iIg~~~~V~~~~~i~~~~  315 (321)
                      ++.+.        .++||+++.|++++.+.+.+
T Consensus       389 ~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v  421 (468)
T 1hm9_A          389 GTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPV  421 (468)
T ss_dssp             TCEEECBCSSCBCCEEECTTCEECTTCEEESSC
T ss_pred             CcEEecCcCccCCCcEECCCeEECCCCEEeCCc
Confidence            76653        36666666666665554433

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.42  E-value=1.2e-12  Score=111.16  Aligned_cols=96  Identities=16%  Similarity=0.270  Sum_probs=68.9

Q ss_pred             CeeeCCCCeeCCCcEECC---CCEECCCCEECCCCeEece------------EECCCCEECCCcEEeceEECCCCEECCC
Q 020813          210 NNIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSVKRS------------VIGRHCRIGSNVKVVNSVVMNHVTIGDG  274 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~---~~~Ig~~~~I~~~~~I~~s------------vIg~~~~Ig~~~~I~~siI~~~v~Ig~~  274 (321)
                      +..|++++.|++++.|..   .+.||++|.|++++.|..+            +||++|.|++++.|.+++|+++|.||.+
T Consensus        37 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~  116 (189)
T 3r1w_A           37 DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMK  116 (189)
T ss_dssp             EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSSEEECTT
T ss_pred             eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCCcEECCC
Confidence            334444444555554432   2356788888888888654            9999999999999999999999999999


Q ss_pred             cEEe-ceEECCCCEECcCcEec-CeEECCCcEE
Q 020813          275 CSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV  305 (321)
Q Consensus       275 ~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V  305 (321)
                      +.|. ++.|++++.|++++++. +..|++++++
T Consensus       117 ~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv  149 (189)
T 3r1w_A          117 SMIMDGAIVEDEVIVAAGATVSPGKVLESGFVY  149 (189)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTEEE
T ss_pred             CEEcCCCEECCCCEEccCCEECCCCEeCCCCEE
Confidence            9886 78888888888666554 3445555444

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.42  E-value=7.6e-13  Score=117.91  Aligned_cols=85  Identities=21%  Similarity=0.350  Sum_probs=58.1

Q ss_pred             CEECCCCEECCCCeEe---ceEECCCCEECCCcEEe----ceEECCCCEECCCcEEec--------------------eE
Q 020813          229 CMLGEGSQMGDKCSVK---RSVIGRHCRIGSNVKVV----NSVVMNHVTIGDGCSIQG--------------------SV  281 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~---~svIg~~~~Ig~~~~I~----~siI~~~v~Ig~~~~I~~--------------------~i  281 (321)
                      +.||++|.|++++.|.   +++||++|.|++++.|.    ++.|+++|.||++|.|.+                    ++
T Consensus        86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~  165 (252)
T 3jqy_B           86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDII  165 (252)
T ss_dssp             EEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEE
T ss_pred             EEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeE
Confidence            3444444444444442   35777777777777777    677777777777777765                    37


Q ss_pred             ECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          282 ICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       282 I~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      |+++|.||+++.|. ++.||++++|++++.+..
T Consensus       166 Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  198 (252)
T 3jqy_B          166 ISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTK  198 (252)
T ss_dssp             ECSSCEECSSEEECTTCEECTTCEECTTCEECS
T ss_pred             EecCcEECCCCEECCCCEECCCCEECCCCEECc
Confidence            78888888777554 777777777777777754

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.41  E-value=9.3e-13  Score=126.63  Aligned_cols=50  Identities=18%  Similarity=0.275  Sum_probs=27.7

Q ss_pred             EECCCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          264 VVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       264 iI~~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      .|+++|.||+++.+.        +++||++|.||+++.|. ++.||++++|++++.+.+
T Consensus       371 ~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~  429 (456)
T 2v0h_A          371 EIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITR  429 (456)
T ss_dssp             EECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECS
T ss_pred             EECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECC
Confidence            444444555554442        35666666666666553 556666666666665543

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.40  E-value=1.6e-12  Score=125.05  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=31.8

Q ss_pred             ceEECCCCEECCCcEEe--------ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          262 NSVVMNHVTIGDGCSIQ--------GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~--------~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +++|+++|.||+++.+.        .++||++|.||.++.|. ++.||++++|++|+.+..
T Consensus       372 ~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~  432 (459)
T 4fce_A          372 DAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTR  432 (459)
T ss_dssp             EEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECS
T ss_pred             CeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEcc
Confidence            33445555555555553        36677777777777654 667777777777766654

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.40  E-value=4.6e-12  Score=108.32  Aligned_cols=78  Identities=12%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             CEECCCCEECCCCeEe-----------------ceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEECc
Q 020813          229 CMLGEGSQMGDKCSVK-----------------RSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQLQE  290 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~-----------------~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~  290 (321)
                      +.||++|.|++++.|.                 .++||+++.|+.++.+.++.|++++.||.+|.|. ++.||++|.||+
T Consensus        52 i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~Iga  131 (194)
T 3tv0_A           52 IVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGA  131 (194)
T ss_dssp             EEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECT
T ss_pred             eEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeeeeecccceecceeeECCeEEECCCCEECC
Confidence            3455666666666553                 3579999999999999999999999999999887 888888888887


Q ss_pred             CcEec-CeEECCCcEEc
Q 020813          291 RVALK-DCQVGQGYVVS  306 (321)
Q Consensus       291 ~~~i~-~~iIg~~~~V~  306 (321)
                      ++.|. ++.|+++++|.
T Consensus       132 gsvV~~~~~Ip~~svv~  148 (194)
T 3tv0_A          132 CCNLNTFEVIPENTVIY  148 (194)
T ss_dssp             TCEECCCEEECTTEEEE
T ss_pred             CCEECCCcEECCCCEEE
Confidence            77665 56666666653

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.38  E-value=2.1e-12  Score=124.91  Aligned_cols=96  Identities=16%  Similarity=0.297  Sum_probs=80.5

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-c----eEECC
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-G----SVICS  284 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~----~iI~~  284 (321)
                      +..|++++.|++++.| .++.||++|.|+++|.|.+++||++|.|++++.|.+++|+++|.||++|.|. +    ++|++
T Consensus       291 ~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~  369 (496)
T 3c8v_A          291 DTVIGENVLVSQRAYL-DNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGD  369 (496)
T ss_dssp             SCEECTTCEECTTCEE-EEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEECT
T ss_pred             CeEECCCCEECCCcEE-eceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEECC
Confidence            4455556666666666 5677889999999999999999999999999999999999999999999998 5    59999


Q ss_pred             CCEECcCcEec---CeEECCCcEEc
Q 020813          285 NAQLQERVALK---DCQVGQGYVVS  306 (321)
Q Consensus       285 ~~~Ig~~~~i~---~~iIg~~~~V~  306 (321)
                      +|.||+++++.   ++.|+++++|.
T Consensus       370 ~a~IGagsvV~~~~~~~I~~~s~v~  394 (496)
T 3c8v_A          370 GCVVMPHTIIDLEEPLEIPAGHLVW  394 (496)
T ss_dssp             TCEECTTCEEECSSCEEECSSEEEC
T ss_pred             CCEECCCCEEecCCCcEeCCCCEEE
Confidence            99999888876   56677776666

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.38  E-value=2.9e-12  Score=111.39  Aligned_cols=103  Identities=11%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             eeeCCCCeeCCC-cEECC---CCEECCCCEECCCCeEec----eEECCCCEECCCcEE----eceEECCCCEECCCcEEe
Q 020813          211 NIIHPSAELGSK-TTVGP---HCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKV----VNSVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       211 ~~i~p~a~i~~~-~~i~~---~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I----~~siI~~~v~Ig~~~~I~  278 (321)
                      .++++++.|.+. +.+.+   .+.||++|.|+.++.|..    ++||++|.|++.+.+    .+++|+++|.|+++|.|.
T Consensus        37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~  116 (215)
T 2wlg_A           37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR  116 (215)
T ss_dssp             EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred             EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence            445566666554 34433   266777777777766652    788888888885444    567888888888888887


Q ss_pred             c--------------------eEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          279 G--------------------SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       279 ~--------------------~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +                    ++|++++.||++++|. ++.||++++|++++.+..
T Consensus       117 ~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~  172 (215)
T 2wlg_A          117 NTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYK  172 (215)
T ss_dssp             SCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECS
T ss_pred             CCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcC
Confidence            5                    3888888888888765 788888888888887764

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.37  E-value=3.9e-12  Score=116.60  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=61.9

Q ss_pred             EECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEec---------eEECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          224 TVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       224 ~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      .+..++.||++|.|+.++.|++ +.||++|.|+.++.|.+         ++|+++|.||.+|.|. +++||+++.||+|+
T Consensus       170 ~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgags  249 (316)
T 3tk8_A          170 YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGV  249 (316)
T ss_dssp             EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCC
Confidence            4444666666666666666654 67788888888877765         6788888888888876 77788888888888


Q ss_pred             Eec-CeEECCCc-------EEcCCcEE
Q 020813          293 ALK-DCQVGQGY-------VVSAGCEY  311 (321)
Q Consensus       293 ~i~-~~iIg~~~-------~V~~~~~i  311 (321)
                      +|. ++.|++.+       .|++++++
T Consensus       250 vV~~~t~I~d~~~~~v~~g~Vp~gsvV  276 (316)
T 3tk8_A          250 YLGQSTKIYDRETGEVTYGRIPAGSVV  276 (316)
T ss_dssp             EECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             EEcCCeeecccccccccccEeCCCCEE
Confidence            775 55555555       56666555

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.34  E-value=9e-12  Score=106.70  Aligned_cols=52  Identities=23%  Similarity=0.456  Sum_probs=35.3

Q ss_pred             cCCeeeCC--CCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEec
Q 020813          208 AQNNIIHP--SAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN  262 (321)
Q Consensus       208 ~~~~~i~p--~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~  262 (321)
                      +.+..|.|  .+.++.++.||++++|+.+|+|.+++.   .+||++|.||++|.|..
T Consensus        60 g~~~~I~~p~~~~ig~~v~IG~~~~I~~~~~i~~~~~---i~IG~~~~Ig~~~~I~~  113 (195)
T 3nz2_A           60 GHKSCVQPPFHCEFGKTIRIGDHTFINMNVVMLDGAP---ITIGDHVLIGPSTQFYT  113 (195)
T ss_dssp             CTTCEECSSEEESCSTTEEECTTCEECTTEEEECSSC---EEECTTCEECTTCEEEC
T ss_pred             CCCcEEcCCeEEEeCCCeEECCCcEECcCCEEecCce---EEECCCCEECCCCEEec
Confidence            34555666  345666666666777666666655443   38999999999998864

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.34  E-value=3.5e-12  Score=115.09  Aligned_cols=89  Identities=13%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             cccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-----ceEECCCCEECCCcEEec---------eEECCCCEE
Q 020813          206 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVVN---------SVVMNHVTI  271 (321)
Q Consensus       206 ~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~~---------siI~~~v~I  271 (321)
                      .+++.+.|.++|+|++++.|+++++|..++.++.+|.|.     .++||++|.|++++.|..         ++|+++|.|
T Consensus       163 ~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~I  242 (332)
T 3fsy_A          163 RIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLL  242 (332)
T ss_dssp             EESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCEECTTCEE
T ss_pred             EECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceEECCCCEE
Confidence            355677889999999999999999999999888888874     268999999999999874         788888888


Q ss_pred             CCCcEEeceEECCCCEECcCcEec
Q 020813          272 GDGCSIQGSVICSNAQLQERVALK  295 (321)
Q Consensus       272 g~~~~I~~~iI~~~~~Ig~~~~i~  295 (321)
                      |.|+.| ++.||++|.||+|++|.
T Consensus       243 GanAtI-gVtIGd~~iIGAGSVVt  265 (332)
T 3fsy_A          243 GANSGL-GISLGDDCVVEAGLYVT  265 (332)
T ss_dssp             CTTCEE-CSCBCSSCEECTTCEEC
T ss_pred             CCCCEE-eeEECCCCEECCCCEEC
Confidence            888888 88888888888777765

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.33  E-value=7.6e-12  Score=115.55  Aligned_cols=86  Identities=14%  Similarity=0.299  Sum_probs=52.0

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCE----------------------------ECCCcEEe
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR----------------------------IGSNVKVV  261 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~----------------------------Ig~~~~I~  261 (321)
                      .+.|.+.+.|++++.|+ +|.|++++.|++++.|.+++|+.+|.                            |+++++|.
T Consensus        83 ~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~  161 (334)
T 2pig_A           83 PCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVN  161 (334)
T ss_dssp             SCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEE
T ss_pred             eeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEe
Confidence            33444444444444443 45555566666556555554444333                            44445555


Q ss_pred             ceEECCCCEECCCcEEeceEECCCCEECcCcEecC
Q 020813          262 NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKD  296 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~  296 (321)
                      +|+|+++|+|+.+|.|++++|++++.|++++.+.+
T Consensus       162 ~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~  196 (334)
T 2pig_A          162 HSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEG  196 (334)
T ss_dssp             SCEEETTCEECTTCEEESEEECTTCEECTTCEEEC
T ss_pred             ccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECC
Confidence            66777777888888887777777887777777654

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.33  E-value=4.6e-12  Score=120.86  Aligned_cols=87  Identities=15%  Similarity=0.263  Sum_probs=77.0

Q ss_pred             CCCEECCCCEECC-----CCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECC
Q 020813          227 PHCMLGEGSQMGD-----KCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQ  301 (321)
Q Consensus       227 ~~~~Ig~~~~I~~-----~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~  301 (321)
                      ..+.+.+.+.|++     ++.+.++.||++|.| .++.|.+|+|+++|+||++|.|.+|+|++++.||+++.|.+|+||+
T Consensus       301 ~~~~i~~~~~i~~~~~~~~~~i~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~  379 (420)
T 3brk_X          301 TYAEITPPAKFVHDDEDRRGSAVSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDH  379 (420)
T ss_dssp             CCCCCCCCCEEECBCSSCBCEEESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECT
T ss_pred             eccccCCCcEEecccccCCcEecCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECC
Confidence            3344444455544     788888999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CcEEcCCcEEcCC
Q 020813          302 GYVVSAGCEYKGE  314 (321)
Q Consensus       302 ~~~V~~~~~i~~~  314 (321)
                      +++|++|+.+.+.
T Consensus       380 ~~~i~~~~~i~~~  392 (420)
T 3brk_X          380 GVVIPEGLIVGED  392 (420)
T ss_dssp             TCEECTTCEESSC
T ss_pred             CCEECCCCEEeCC
Confidence            9999999999865

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.32  E-value=2.1e-11  Score=103.88  Aligned_cols=50  Identities=24%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             CeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEec
Q 020813          210 NNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN  262 (321)
Q Consensus       210 ~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~  262 (321)
                      +..|+|++.+  +.++.||++++|+++|.|.+.+   ...||++|.|++++.|.+
T Consensus        64 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~---~v~IG~~~~Ig~~~~I~~  115 (190)
T 3hjj_A           64 KAQINPDFRCDYGYNIHVGKSFFANFNCVILDVC---EVRIGDHCMFAPGVHIYT  115 (190)
T ss_dssp             CCEECSSCEESSSTTEEECTTCEECTTCEEECSS---CEEECTTCEECTTCEEEC
T ss_pred             CcEECCCEEEEeCCceEECCceeeCCCeEEEeCC---CeEECCceEEcCCcEEec
Confidence            4566666555  5556666666666666655432   358999999999999953

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.29  E-value=2.1e-11  Score=118.97  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=56.9

Q ss_pred             eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECcCcEec--------CeEECCCcEEcCCcEEcCCeEe
Q 020813          246 SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALK--------DCQVGQGYVVSAGCEYKGESLA  317 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~--------~~iIg~~~~V~~~~~i~~~~~~  317 (321)
                      ++|+++|.||+++.+.+|+|++++.|++.+.+++++||++|.||+|+++-        .++||++++|+.++.+.+.+.+
T Consensus       353 ~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~I  432 (501)
T 3st8_A          353 TALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTI  432 (501)
T ss_dssp             CEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEE
T ss_pred             cEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEE
Confidence            66677777777777778899999999999999999999999999998773        3777777777777666555444


Q ss_pred             e
Q 020813          318 R  318 (321)
Q Consensus       318 ~  318 (321)
                      +
T Consensus       433 g  433 (501)
T 3st8_A          433 G  433 (501)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.29  E-value=7.7e-12  Score=113.65  Aligned_cols=87  Identities=15%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             ccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-----eEECCCCEECCCcEEec---------eEECCCCE
Q 020813          205 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-----SVIGRHCRIGSNVKVVN---------SVVMNHVT  270 (321)
Q Consensus       205 ~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-----svIg~~~~Ig~~~~I~~---------siI~~~v~  270 (321)
                      ..+.+...|.+++.|++++.|+++++|+.++.|+++|.|..     ++||++|.|+++|.|..         ++|+++|.
T Consensus       185 v~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~  264 (347)
T 3r5d_A          185 VRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCL  264 (347)
T ss_dssp             EEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEECTTCE
T ss_pred             cEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEECCCCE
Confidence            35667778899999999999998888888888888887752     67888888888887764         45666666


Q ss_pred             ECCCcEEeceEECCCCEECcCc
Q 020813          271 IGDGCSIQGSVICSNAQLQERV  292 (321)
Q Consensus       271 Ig~~~~I~~~iI~~~~~Ig~~~  292 (321)
                      ||.|+.| ++.||++|.||+|+
T Consensus       265 IGAnAtI-GVtIGd~~iIGAGS  285 (347)
T 3r5d_A          265 IGANAGI-GIPLGDRNIVEAGL  285 (347)
T ss_dssp             ECTTCEE-CSCBCTTCEECTTC
T ss_pred             ECCCCEE-eeEECCCCEECCCC
Confidence            6666666 55555544444333

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.28  E-value=2.1e-11  Score=103.81  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             cCCeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEE
Q 020813          208 AQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV  260 (321)
Q Consensus       208 ~~~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I  260 (321)
                      +.+..|.|++.+  +.++.||+++.|+.+|+|.+.+.   ..||++|.|+++|.|
T Consensus        60 g~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~---i~IG~~~~Ig~~v~I  111 (188)
T 3srt_A           60 GKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCK---IEIGDNVMLAPNVQI  111 (188)
T ss_dssp             CSCEEECSCEEESSSTTEEECTTEEECTTEEEECSSC---EEECSSCEECTTCEE
T ss_pred             CCCCEEcCCEEEEeCCCeEECCcccccCceEEecCCc---eEECCeeEECCCcEE
Confidence            345666776665  35566666666666666654433   389999999999998

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.27  E-value=8.9e-12  Score=113.79  Aligned_cols=87  Identities=20%  Similarity=0.335  Sum_probs=61.1

Q ss_pred             CCeeeCCCCeeCCCcEE--CCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEe-----ceEECCCCEECCCcEEe-c
Q 020813          209 QNNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV-----NSVVMNHVTIGDGCSIQ-G  279 (321)
Q Consensus       209 ~~~~i~p~a~i~~~~~i--~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~-----~siI~~~v~Ig~~~~I~-~  279 (321)
                      .+..|+|++.|++++.|  +.+++||++|.||++|.|.+ ++||.++.+++++.+.     +++|+++|.||.+|.|. +
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilgg  241 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGN  241 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESS
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCC
Confidence            35567777777777777  55677777777777776654 5666666666666554     34788888888888776 6


Q ss_pred             eEECCCCEECcCcEec
Q 020813          280 SVICSNAQLQERVALK  295 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~  295 (321)
                      ++||+++.||+|++|.
T Consensus       242 v~IG~~a~IGagsvV~  257 (313)
T 3q1x_A          242 IIVGSHVRIGANCWID  257 (313)
T ss_dssp             CEECSSEEECTTCEEC
T ss_pred             cEECCCCEECCCCEEC
Confidence            7788888888777775

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.25  E-value=2.3e-11  Score=111.13  Aligned_cols=94  Identities=18%  Similarity=0.326  Sum_probs=57.9

Q ss_pred             CCCeeCCCcEECCCCEE--CCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECcC
Q 020813          215 PSAELGSKTTVGPHCML--GEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQER  291 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~I--g~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~  291 (321)
                      .++.|++++.|++++.|  +.+++||++     ++||++|.|+.+++|+ ++.+++++.++.++. .+++||++|.||+|
T Consensus       162 ~gv~I~p~a~IG~~v~I~~g~gvvIG~~-----~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~-~~~~IGd~v~IGag  235 (313)
T 3q1x_A          162 TSIDIHPGASIKGHFFIDHGVGVVIGET-----AIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTK-RHPTVGDYVTIGTG  235 (313)
T ss_dssp             HCCEECTTCEECSSCEESSCTTCEECTT-----CEECSSCEECTTCEEECCCCCCTTCCCCCCSS-CSCEECSSCEECTT
T ss_pred             CCeEECCCCEECCCEEECCCCceEECCC-----cEECCCCEECCCcEEeCCcEECCCceEcCCCc-cCCEECCCCEECCC
Confidence            44555555555555555  333444443     3566666666666554 234444554444431 24588888888888


Q ss_pred             cEec-CeEECCCcEEcCCcEEcCC
Q 020813          292 VALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       292 ~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      ++|. +++||++++|++|+++...
T Consensus       236 a~Ilggv~IG~~a~IGagsvV~~d  259 (313)
T 3q1x_A          236 AKVLGNIIVGSHVRIGANCWIDRD  259 (313)
T ss_dssp             CEEESSCEECSSEEECTTCEECSC
T ss_pred             CEECCCcEECCCCEECCCCEECCC
Confidence            8665 6888888888888887654

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.25  E-value=3.4e-11  Score=103.38  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CCeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece-------------EECCCCEECC
Q 020813          209 QNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-------------VVMNHVTIGD  273 (321)
Q Consensus       209 ~~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s-------------iI~~~v~Ig~  273 (321)
                      .+..|.+++.+  +.++.||+++.|+++|+|.+++.   .+||++|.||++|.|..+             .+...++||+
T Consensus        59 ~~~~i~~~~~~~~g~~~~IG~~~~I~~~~~i~~~~~---v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~  135 (199)
T 3ftt_A           59 DNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQ---ITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGS  135 (199)
T ss_dssp             SSEEECSSEEESSSTTEEECSSEEECTTEEEECSSC---EEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred             CCeEEeCCEEEEecCCcEECCCeEECCCeEEecCCE---EEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcC
Confidence            45666666665  56666666766666666654432   489999999999998432             2344445555


Q ss_pred             CcEEe-ceEECCCCEEC
Q 020813          274 GCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       274 ~~~I~-~~iI~~~~~Ig  289 (321)
                      +|+|+ +++|.++++||
T Consensus       136 ~v~IG~~~~I~~gv~IG  152 (199)
T 3ftt_A          136 NTWFGGHVAVLPGVTIG  152 (199)
T ss_dssp             SEEECTTCEECTTCEEC
T ss_pred             CcEEcCCCEECCCCEEC
Confidence            55554 44555555554

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.25  E-value=2.3e-11  Score=108.26  Aligned_cols=86  Identities=21%  Similarity=0.368  Sum_probs=66.5

Q ss_pred             eeeCCCCeeCCCcEE--CCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEece--------------------E
Q 020813          211 NIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVNS--------------------V  264 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i--~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~s--------------------i  264 (321)
                      ..|++++.|.+++.+  +.++.||++|.|+.+|.|.    +++||++|.||+++.|.++                    +
T Consensus        86 v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~  165 (252)
T 3jqy_B           86 VRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDII  165 (252)
T ss_dssp             EEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEE
T ss_pred             EEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeE
Confidence            356666666666666  3467889999999999888    7999999999999999875                    6


Q ss_pred             ECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          265 VMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       265 I~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      |+++|.||.+|.|. +++|++++.||++++|..
T Consensus       166 Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  198 (252)
T 3jqy_B          166 ISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTK  198 (252)
T ss_dssp             ECSSCEECSSEEECTTCEECTTCEECTTCEECS
T ss_pred             EecCcEECCCCEECCCCEECCCCEECCCCEECc
Confidence            77777777777776 777777777777776654

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.23  E-value=8.4e-11  Score=101.19  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             CCeeeCCCCe--eCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece-------------EECCCCEECC
Q 020813          209 QNNIIHPSAE--LGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-------------VVMNHVTIGD  273 (321)
Q Consensus       209 ~~~~i~p~a~--i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s-------------iI~~~v~Ig~  273 (321)
                      .+..|.|++.  ++.++.||+++.|+.+|.|.+..   ..+||++|.|+++|.|..+             .+..+++||+
T Consensus        60 ~~~~I~~~~~~~~g~~i~IG~~~~I~~~~~i~~~~---~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd  136 (203)
T 1krr_A           60 ENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN  136 (203)
T ss_dssp             SSCEECSCEEESCSTTEEECSSCEECSCEEEECSS---CEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECT
T ss_pred             CCcEEcCCeEEEeCCCeEECCeeEECCccEEeccc---ceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECC
Confidence            4556666643  35555555555555555554332   2589999999999988632             1334455555


Q ss_pred             CcEEe-ceEECCCCEEC
Q 020813          274 GCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       274 ~~~I~-~~iI~~~~~Ig  289 (321)
                      +|+|+ +++|.++++||
T Consensus       137 ~v~IG~~a~I~~gv~IG  153 (203)
T 1krr_A          137 NVWIGSHVVINPGVTIG  153 (203)
T ss_dssp             TCEECTTCEECTTCEEC
T ss_pred             CeEECCCCEEeCCeEEC
Confidence            55554 45555555555

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.22  E-value=5.8e-11  Score=106.93  Aligned_cols=52  Identities=15%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             EECCCCEECCCcEEec---------eEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeE
Q 020813          247 VIGRHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQ  298 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~i  298 (321)
                      +||++|.|+.+++|++         ++|+++|.||.+|.|. +++||+++.||+|++|...+
T Consensus       192 ~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~kdV  253 (287)
T 3mc4_A          192 VVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSV  253 (287)
T ss_dssp             EECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred             EECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Confidence            5566666666666654         6899999999999887 78999999999888886543

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.21  E-value=8.5e-11  Score=99.50  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=34.7

Q ss_pred             CeeeCCCC--eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe
Q 020813          210 NNIIHPSA--ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV  261 (321)
Q Consensus       210 ~~~i~p~a--~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~  261 (321)
                      +..|+|++  .++.++.||+++.|+++|+|.+..   ..+||++|.|+++|.|.
T Consensus        58 ~~~I~~~~~~~~g~~v~IG~~~~I~~~~~i~~~~---~i~IG~~v~Ig~~v~I~  108 (182)
T 1ocx_A           58 EAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVC---PIRIGDNCMLAPGVHIY  108 (182)
T ss_dssp             SEEECSCEEESSSTTEEECSSEEECSSEEEECSS---CEEECTTCEECTTCEEE
T ss_pred             CEEEeCCEEEEeCCCEEECCCcEEeCCeEEEecc---ceEEcCCcEEeCCcEEE
Confidence            46677773  456667777777777766665432   35899999999999984

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.19  E-value=3.8e-11  Score=115.49  Aligned_cols=91  Identities=20%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             CcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCC----------------
Q 020813          222 KTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSN----------------  285 (321)
Q Consensus       222 ~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~----------------  285 (321)
                      .+.+++++.|++++.| .++.|.+++||++|.|+. +.|.+++|+++|.||++|.|.++++..+                
T Consensus       308 ~~~i~~~~~i~~~~~i-~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g  385 (451)
T 1yp2_A          308 SAPIYTQPRYLPPSKM-LDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKG  385 (451)
T ss_dssp             SSCCCCCCCCCCCEEE-EEEEEEEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTT
T ss_pred             CCeeccCCccCCCeEE-cceEEeCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccC
Confidence            3444445555555555 567777799999999997 9999999999999999999998887777                


Q ss_pred             ---CEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          286 ---AQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       286 ---~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                         +.||+++.+.+|+||+++.|++++.+.+.
T Consensus       386 ~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~  417 (451)
T 1yp2_A          386 SVPIGIGKNCHIKRAIIDKNARIGDNVKIINK  417 (451)
T ss_dssp             CCCSEECTTCEEESEEECTTCEECTTCEECCS
T ss_pred             ceeEEECCCCEEeccEeCCCcEECCCCEEeCC
Confidence               99999999999999999999999999875

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.17  E-value=9.6e-11  Score=106.75  Aligned_cols=83  Identities=18%  Similarity=0.310  Sum_probs=49.7

Q ss_pred             CeeeCCCCeeCCCcEE--CCCCEECCCCEECCCCeEeceEECCCCEECCCcEE------------eceEECCCCEECCCc
Q 020813          210 NNIIHPSAELGSKTTV--GPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKV------------VNSVVMNHVTIGDGC  275 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i--~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I------------~~siI~~~v~Ig~~~  275 (321)
                      +..|+|++.|++++.|  +.+++||++++||++|     .|+++|+||.++..            .+++|+++|.||+||
T Consensus       190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v-----~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga  264 (310)
T 3f1x_A          190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNV-----KLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNA  264 (310)
T ss_dssp             SCEECTTCEECSSCEEESCTTCEECTTCEECSSC-----EEETTCEEECC--------------CCSCEECTTCEECTTC
T ss_pred             CcEECCCCEECCCcEECCCCCeEECCceEEcCCC-----EECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCC
Confidence            4455666666555555  4455555555554444     44555555544411            233688888888888


Q ss_pred             EEe-ceEECCCCEECcCcEecCe
Q 020813          276 SIQ-GSVICSNAQLQERVALKDC  297 (321)
Q Consensus       276 ~I~-~~iI~~~~~Ig~~~~i~~~  297 (321)
                      .|. +++||+++.||+|++|...
T Consensus       265 ~Il~gv~IGd~a~IGagsvV~~d  287 (310)
T 3f1x_A          265 TILGRVTIGKGATVGGNIWVTEN  287 (310)
T ss_dssp             EEESSCEECTTCEECSSCEECSC
T ss_pred             EECCCcEECCCCEECCCCEECCc
Confidence            886 7888888888877777643

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.17  E-value=1.5e-10  Score=99.10  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=13.3

Q ss_pred             EECCCCEECCCcEEe-ceEECCCCEECcCcEe
Q 020813          264 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVAL  294 (321)
Q Consensus       264 iI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i  294 (321)
                      +|+++|.||.+|.|. +++||+++.||+++++
T Consensus       134 ~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV  165 (195)
T 3nz2_A          134 VIEDDVWIGGNVVINQGVTIGARSVVAANSVV  165 (195)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             EECCCCEEcCCCEECCCCEECCCCEECCCCEE
Confidence            344444444444443 4444444444444433

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.16  E-value=1.6e-10  Score=98.06  Aligned_cols=83  Identities=27%  Similarity=0.394  Sum_probs=49.2

Q ss_pred             CeeeCCCC--eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-------------------ceEECCC
Q 020813          210 NNIIHPSA--ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-------------------NSVVMNH  268 (321)
Q Consensus       210 ~~~i~p~a--~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-------------------~siI~~~  268 (321)
                      +..|.++.  .++.++.||+++.|+.+++|.+.   .+.+||++|.|+++|.|.                   .++|+++
T Consensus        60 ~~~I~~p~~~~~g~~v~IG~~~~i~~~~~i~~~---~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~  136 (185)
T 2p2o_A           60 RLFIEPNFRCDYGYNIHVGENFFMNFDGVILDV---CEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHN  136 (185)
T ss_dssp             CEEECSCEEESCSTTEEECTTEEECSSEEEECS---SCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSS
T ss_pred             CcEEeccEEEEecCCEEECCeeEEcCCeEEEec---cceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCC
Confidence            45555543  34556666666666666555432   246899999999999985                   2345555


Q ss_pred             CEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          269 VTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       269 v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      |.||.+|.|. +++||+++.||+++++.
T Consensus       137 v~IG~~~~I~~gv~IG~~~vIgagsvV~  164 (185)
T 2p2o_A          137 VWIGGRAVINPGVTIGDNAVIASGAVVT  164 (185)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEEC
Confidence            5555555554 45555555555544444

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.15  E-value=7.8e-11  Score=102.72  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=18.0

Q ss_pred             CCEECCCCeEec-eEECCCCEECCCcEE
Q 020813          234 GSQMGDKCSVKR-SVIGRHCRIGSNVKV  260 (321)
Q Consensus       234 ~~~I~~~~~I~~-svIg~~~~Ig~~~~I  260 (321)
                      +++|+.++.|++ ++||++|.|+++++|
T Consensus        54 ~~vI~~~~~Ig~~v~IG~~~~Ig~~v~i   81 (220)
T 4hur_A           54 DQVLYHYEVIGDKLIIGRFCSIGPGTTF   81 (220)
T ss_dssp             GGEESCCTTTCCCEEECSSCEECTTCEE
T ss_pred             CeEEeCCCEECCCeEECCCCEECCCCEE
Confidence            555666655554 577777777777775

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.15  E-value=4.6e-10  Score=95.57  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=19.0

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++||++|+||.+++|. ++.||++++|++++++..
T Consensus       135 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  169 (190)
T 3hjj_A          135 VKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTK  169 (190)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCCEECc
Confidence            4555555555555554 555555555555555543

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.14  E-value=2.1e-10  Score=97.58  Aligned_cols=68  Identities=15%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             EECCCCEECCCcEEec---eEECCCCEECCCcEE-------------------eceEECCCCEECcCcEec-CeEECCCc
Q 020813          247 VIGRHCRIGSNVKVVN---SVVMNHVTIGDGCSI-------------------QGSVICSNAQLQERVALK-DCQVGQGY  303 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~~---siI~~~v~Ig~~~~I-------------------~~~iI~~~~~Ig~~~~i~-~~iIg~~~  303 (321)
                      .||+++.|+.++.|.+   ..|+++|.||++|.|                   ..++||++|+||.+++|. +++||+++
T Consensus        78 ~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~  157 (188)
T 3srt_A           78 HVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGDNV  157 (188)
T ss_dssp             EECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECSSE
T ss_pred             EECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECCCC
Confidence            4444444444444432   146666666666666                   246666666666666664 56666666


Q ss_pred             EEcCCcEEcCC
Q 020813          304 VVSAGCEYKGE  314 (321)
Q Consensus       304 ~V~~~~~i~~~  314 (321)
                      +|++++++...
T Consensus       158 vIgagsvV~~d  168 (188)
T 3srt_A          158 VIGAGSVVTKD  168 (188)
T ss_dssp             EECTTCEECSC
T ss_pred             EECCCCEECcc
Confidence            66666666543

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.13  E-value=1.8e-10  Score=98.87  Aligned_cols=32  Identities=31%  Similarity=0.413  Sum_probs=15.6

Q ss_pred             EECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          281 VICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       281 iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      +||++|.||.+++|. ++.||++++|++++++.
T Consensus       132 ~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~  164 (199)
T 3ftt_A          132 HIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVT  164 (199)
T ss_dssp             EECSSEEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEcCCcEEcCCCEECCCCEECCCCEECCCCEEC
Confidence            455555555555443 44455555555544443

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.13  E-value=4.8e-10  Score=100.14  Aligned_cols=110  Identities=20%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             CccceeeccCHHHHHHHchhhccccccCCC----cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEEC
Q 020813          174 NSKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIG  249 (321)
Q Consensus       174 ~~~~w~~i~t~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg  249 (321)
                      ..+||    .+..|+.++.........+..    .........|+|++.|++++.|+.+    .+++||++|     +||
T Consensus       101 ~~g~~----al~~yR~ah~l~~~~~~~l~~~l~~~~~~~~g~~I~p~a~IG~g~~I~~~----~~vvIG~~~-----~IG  167 (267)
T 1ssq_A          101 LKGFH----AIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHA----TGIVVGETS-----VIE  167 (267)
T ss_dssp             CHHHH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEESSC----TTCEECTTC-----EEC
T ss_pred             hchHH----HHHHHHHHHHHHHhHHHHHHHHHHHhceeccceEeCCCCEECCCEEECCC----CceEECCee-----EEC
Confidence            36777    456677766554432211110    0011224456666666655555431    244444443     566


Q ss_pred             CCCEECCCcEEec---------eEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          250 RHCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       250 ~~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      ++|.|+.+++|++         ++|+++|.||.++.|. +++||+++.||+|+++..
T Consensus       168 ~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~~  224 (267)
T 1ssq_A          168 NDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLN  224 (267)
T ss_dssp             TTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             CCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence            6666666666654         5899999999998886 788999999998888764

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.11  E-value=4.1e-10  Score=97.71  Aligned_cols=95  Identities=19%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             eeeCCCCeeCCCcEECC---CCEECCCCEECCCCeE----eceEECCCCEECCCcEEece--------------------
Q 020813          211 NIIHPSAELGSKTTVGP---HCMLGEGSQMGDKCSV----KRSVIGRHCRIGSNVKVVNS--------------------  263 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~---~~~Ig~~~~I~~~~~I----~~svIg~~~~Ig~~~~I~~s--------------------  263 (321)
                      ..|++++.|++++.+..   ++.||++|.|++.+.+    .+++||++|.|++++.|.++                    
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            45566666666555532   3778888888874444    46899999999999999864                    


Q ss_pred             EECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEc
Q 020813          264 VVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVS  306 (321)
Q Consensus       264 iI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~  306 (321)
                      +|+++|.||.++.|. +++|++++.|++++++... |.+++++.
T Consensus       139 ~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~-vp~~~i~~  181 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKS-FKEPNCVI  181 (215)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECSC-CCCCSCEE
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEEcCc-cCCCeEEE
Confidence            677777777777765 6777777777777666543 34444443

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.11  E-value=3e-10  Score=98.98  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=14.1

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEE
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEY  311 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i  311 (321)
                      ++||++|.||.+++|. ++.||++++|++++.+
T Consensus       120 v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV  152 (220)
T 4hur_A          120 IEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVV  152 (220)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             eEECCCcEECCCCEEeCCCEECCCCEEcCCCEE
Confidence            3444444444444433 3444444444444444

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.10  E-value=7.4e-10  Score=99.86  Aligned_cols=109  Identities=18%  Similarity=0.178  Sum_probs=64.5

Q ss_pred             ccceeeccCHHHHHHHchhhccccccCCC----cccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECC
Q 020813          175 SKYCVRLNSIQAFMDINRDVIGEANHLSG----YNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR  250 (321)
Q Consensus       175 ~~~w~~i~t~~~y~~~~~~~l~~~~~~~~----~~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~  250 (321)
                      .+||.    +..|+.++.........+..    .........|+|++.|++++.|+.+    .+++||++|     +||+
T Consensus       122 ~G~~a----l~~yR~ah~l~~~~r~~l~~~l~~~~~~~~g~~I~p~a~IG~gv~I~~g----~gvvIG~~~-----~IG~  188 (289)
T 1t3d_A          122 KGFHA----LQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHA----TGIVVGETA-----VIEN  188 (289)
T ss_dssp             HHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCEECTTCEECSSCEECSC----TTCEECTTC-----EECS
T ss_pred             ccHHH----HHHHHHHHHHHHcChHHHHHHHHHhceeccceEEcCCCEEcCCEEECCC----CceEECCCc-----EECC
Confidence            67776    56676666554332211110    0011234566676666666666431    234444433     4555


Q ss_pred             CCEECCCcEEec---------eEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          251 HCRIGSNVKVVN---------SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       251 ~~~Ig~~~~I~~---------siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      +|.|+.+++|++         ++|+++|.||.++.|. +++||+++.||+|+++..
T Consensus       189 ~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~  244 (289)
T 1t3d_A          189 DVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQ  244 (289)
T ss_dssp             SCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             CCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEECCCCEEcc
Confidence            555555555543         6788888888888886 788888888888887754

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.08  E-value=2.9e-10  Score=106.05  Aligned_cols=85  Identities=16%  Similarity=0.305  Sum_probs=51.8

Q ss_pred             cccCCeeeCCCCeeCCCcEECCC-CEECCCCE-ECCCCeEec-----eEECCCCEECCCcEEec---------eEECCCC
Q 020813          206 FSAQNNIIHPSAELGSKTTVGPH-CMLGEGSQ-MGDKCSVKR-----SVIGRHCRIGSNVKVVN---------SVVMNHV  269 (321)
Q Consensus       206 ~~~~~~~i~p~a~i~~~~~i~~~-~~Ig~~~~-I~~~~~I~~-----svIg~~~~Ig~~~~I~~---------siI~~~v  269 (321)
                      .+..++.|.+++.|++++.|+++ ++|+.++. ||+ |.|..     ++||++|.|+.++.|..         ++|+++|
T Consensus       219 ~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv  297 (387)
T 2rij_A          219 RILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKAC  297 (387)
T ss_dssp             EESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTC
T ss_pred             EEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCC
Confidence            44556778888899999999886 88888888 787 76642     44555555555554321         3455555


Q ss_pred             EECCCcEEeceEECCCCEECcCc
Q 020813          270 TIGDGCSIQGSVICSNAQLQERV  292 (321)
Q Consensus       270 ~Ig~~~~I~~~iI~~~~~Ig~~~  292 (321)
                      .||.+|. .+++||++|.||+|+
T Consensus       298 ~IGagAv-~GV~IGdgavIGAGs  319 (387)
T 2rij_A          298 LLGANSV-TGIPLGDNCIVDAGI  319 (387)
T ss_dssp             EECTTCE-ECSCBCTTCEECTTC
T ss_pred             EECCCCc-CCcEECCCCEECCCC
Confidence            5555544 444444444444333

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.07  E-value=7.4e-10  Score=100.91  Aligned_cols=92  Identities=14%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             CCCeeCCCcEECCCCEE--CCCCEECCCCeEeceEECCCCEECCCcEEeceEE-CCCCEECCC--cEEeceEECCCCEEC
Q 020813          215 PSAELGSKTTVGPHCML--GEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVV-MNHVTIGDG--CSIQGSVICSNAQLQ  289 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~I--g~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI-~~~v~Ig~~--~~I~~~iI~~~~~Ig  289 (321)
                      .++.|++++.||+++.|  +.+++||++     ++||++|.|+.+++|+.... .+..  |..  ..-..++||++|.||
T Consensus       189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~-----~~IG~~v~I~~gvtIg~~~~~~~~~--g~~i~~~~~~~~IGd~V~IG  261 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDHGTGVVIGAT-----SIIGNNVKLYQGVTLGAKSFPLDNN--GNPIKGIPRHPILEDDVIVY  261 (310)
T ss_dssp             HSCEECTTCEECSSCEEESCTTCEECTT-----CEECSSCEEETTCEEECC----------------CCSCEECTTCEEC
T ss_pred             CCcEECCCCEECCCcEECCCCCeEECCc-----eEEcCCCEECCCCEECCCccccccc--cccccCCCCCCEECCCcEEc
Confidence            34444444444444444  333444333     35566666666655543321 0000  000  001234566666666


Q ss_pred             cCcEec-CeEECCCcEEcCCcEEcC
Q 020813          290 ERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       290 ~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +|++|. +++||++++|++|+++..
T Consensus       262 aga~Il~gv~IGd~a~IGagsvV~~  286 (310)
T 3f1x_A          262 SNATILGRVTIGKGATVGGNIWVTE  286 (310)
T ss_dssp             TTCEEESSCEECTTCEECSSCEECS
T ss_pred             CCCEECCCcEECCCCEECCCCEECC
Confidence            666554 566666666666666553

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.04  E-value=9.5e-10  Score=98.99  Aligned_cols=82  Identities=23%  Similarity=0.317  Sum_probs=36.5

Q ss_pred             cEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe---ceEECCCCEECcCcEec-CeE
Q 020813          223 TTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ---GSVICSNAQLQERVALK-DCQ  298 (321)
Q Consensus       223 ~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~---~~iI~~~~~Ig~~~~i~-~~i  298 (321)
                      +.|++++.||+++.|+.++   +++||++|.||++|.|.     ++|+|+.+....   .++||++|.||++++|. +++
T Consensus       165 i~I~p~a~IG~~v~I~hg~---gvvIG~~~~IGd~v~I~-----~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~  236 (287)
T 3mc4_A          165 TDIHPAARLGSGLFLDHAT---GLVVGETAVVEDNVSIL-----HGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQ  236 (287)
T ss_dssp             CEECTTCEECSSCEEESCT---TCEECTTCEECSSCEEE-----TTCEEEC-----CCCSCEECTTCEECTTCEEESSCE
T ss_pred             eEECCCCEECCCeEEccCC---CeEECCCeEECCCCEEc-----CCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcE
Confidence            3344444444444443221   23666666666666443     233333221111   24555555555555443 455


Q ss_pred             ECCCcEEcCCcEEc
Q 020813          299 VGQGYVVSAGCEYK  312 (321)
Q Consensus       299 Ig~~~~V~~~~~i~  312 (321)
                      ||++++|++|+++.
T Consensus       237 IG~~a~IGagsvV~  250 (287)
T 3mc4_A          237 VGQCSKIAAGSVVL  250 (287)
T ss_dssp             ECTTCEECTTCEEC
T ss_pred             ECCCCEECCCCEEc
Confidence            55555555555443

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=98.99  E-value=3.5e-09  Score=91.03  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=17.6

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      ++|+++|.||.+|.|. +++||+++.||+++++.
T Consensus       132 v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~  165 (203)
T 1krr_A          132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT  165 (203)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEECCCeEECCCCEEeCCeEECCCCEECCCCEEC
Confidence            4455555555555554 55555555555555544

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=98.98  E-value=1.6e-09  Score=91.68  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=16.4

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          263 SVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       263 siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      ++|+++|.||.+|.|. +++||+++.||+++++.
T Consensus       129 v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~  162 (182)
T 1ocx_A          129 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVT  162 (182)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             eEEeCCeEECCCCEECCCcEECCCCEECCCCEEC
Confidence            4455555555555544 45555555555444443

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=98.97  E-value=1.8e-09  Score=91.58  Aligned_cols=66  Identities=20%  Similarity=0.324  Sum_probs=38.5

Q ss_pred             ECCCCEECCCcEE---eceEECCCCEECCCcEEe-------------------ceEECCCCEECcCcEec-CeEECCCcE
Q 020813          248 IGRHCRIGSNVKV---VNSVVMNHVTIGDGCSIQ-------------------GSVICSNAQLQERVALK-DCQVGQGYV  304 (321)
Q Consensus       248 Ig~~~~Ig~~~~I---~~siI~~~v~Ig~~~~I~-------------------~~iI~~~~~Ig~~~~i~-~~iIg~~~~  304 (321)
                      ||+++.|+.++.|   .+..|+++|.|+++|.|.                   .++||++|+||.+++|. ++.||++++
T Consensus        77 IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~~~v  156 (185)
T 2p2o_A           77 VGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAV  156 (185)
T ss_dssp             ECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECTTCE
T ss_pred             ECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECCCCE
Confidence            3444444444444   234566666666666662                   45677777777776665 666666666


Q ss_pred             EcCCcEEcC
Q 020813          305 VSAGCEYKG  313 (321)
Q Consensus       305 V~~~~~i~~  313 (321)
                      |++|+++.+
T Consensus       157 IgagsvV~~  165 (185)
T 2p2o_A          157 IASGAVVTK  165 (185)
T ss_dssp             ECTTCEECS
T ss_pred             ECCCCEECC
Confidence            666666654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=98.96  E-value=4.8e-09  Score=93.69  Aligned_cols=71  Identities=14%  Similarity=0.186  Sum_probs=41.6

Q ss_pred             CCeeeCCCCeeC--CCcEECCCCEECCCCEECCCCeEec---------eEECCCCEECCCcEEe-ceEECCCCEECCCcE
Q 020813          209 QNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR---------SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCS  276 (321)
Q Consensus       209 ~~~~i~p~a~i~--~~~~i~~~~~Ig~~~~I~~~~~I~~---------svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~  276 (321)
                      ..+.|++++.|+  .++.|++++.||++|.|+.+++|+.         ++||++|.||.+++|. +++|++++.||+|+.
T Consensus       142 p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~IGagsv  221 (267)
T 1ssq_A          142 PAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSV  221 (267)
T ss_dssp             TTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEECTTCE
T ss_pred             CCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEECCCCE
Confidence            344555555555  3556666666666666666666654         4677777777766553 344555555555554


Q ss_pred             Eec
Q 020813          277 IQG  279 (321)
Q Consensus       277 I~~  279 (321)
                      |..
T Consensus       222 V~~  224 (267)
T 1ssq_A          222 VLN  224 (267)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=98.93  E-value=6.4e-09  Score=93.76  Aligned_cols=51  Identities=16%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             CeeeCCCCeeC--CCcEECCCCEECCCCEECCCCeEec---------eEECCCCEECCCcEE
Q 020813          210 NNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR---------SVIGRHCRIGSNVKV  260 (321)
Q Consensus       210 ~~~i~p~a~i~--~~~~i~~~~~Ig~~~~I~~~~~I~~---------svIg~~~~Ig~~~~I  260 (321)
                      ++.|++++.|+  .++.|++++.||++|.|+.+++|+.         ++||++|.||.+++|
T Consensus       163 ~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~I  224 (289)
T 1t3d_A          163 AAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKI  224 (289)
T ss_dssp             TCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEE
T ss_pred             CCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEE
Confidence            34444444443  2445555555555555555555443         345555555555443

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.88  E-value=5.4e-09  Score=90.42  Aligned_cols=15  Identities=47%  Similarity=0.769  Sum_probs=8.0

Q ss_pred             eEECCCCEECCCcEE
Q 020813          246 SVIGRHCRIGSNVKV  260 (321)
Q Consensus       246 svIg~~~~Ig~~~~I  260 (321)
                      ..||++|.|+++|+|
T Consensus        59 v~IG~~~~I~~~v~i   73 (212)
T 3eev_A           59 LVIGSFCSIGSGAVF   73 (212)
T ss_dssp             EEECSSCEECTTCEE
T ss_pred             cEECCCCEECCCCEE
Confidence            455555555555544

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.83  E-value=8.4e-09  Score=89.67  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      +++||++|.||.++.|. ++.||++++|++++.+.
T Consensus       118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~  152 (219)
T 4e8l_A          118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT  152 (219)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            45555555555555443 45555555555555543

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.79  E-value=1.6e-08  Score=87.44  Aligned_cols=17  Identities=12%  Similarity=0.356  Sum_probs=9.7

Q ss_pred             CeeeCCCCeeCCCcEEC
Q 020813          210 NNIIHPSAELGSKTTVG  226 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~  226 (321)
                      +..+.+.+.||+++.|+
T Consensus        18 ~vv~~~~v~IG~~t~I~   34 (212)
T 3eev_A           18 QQVTNPNIIVGKHSYYS   34 (212)
T ss_dssp             GTCCCTTEEECSSCEEC
T ss_pred             heeeCCCeEECCCeEEc
Confidence            44455666666666554

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.74  E-value=8e-09  Score=89.19  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=11.4

Q ss_pred             EECCCCEECCCcEEe-ceEECCCCEECcCc
Q 020813          264 VVMNHVTIGDGCSIQ-GSVICSNAQLQERV  292 (321)
Q Consensus       264 iI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~  292 (321)
                      +|+++|.||.++.|. ++.||+++.|++++
T Consensus       115 ~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags  144 (209)
T 1mr7_A          115 IIGNDVWIGKDVVIMPGVKIGDGAIVAANS  144 (209)
T ss_dssp             EECSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EECCCCEEcCCCEEcCCCEECCCCEEcCCC
Confidence            344444444444433 33334433333333

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.74  E-value=5.6e-08  Score=84.46  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=18.5

Q ss_pred             ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      +++|+++|.||.+|.|. ++.||+++.|++++.+.
T Consensus       118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~  152 (219)
T 4e8l_A          118 DIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVT  152 (219)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CcEECCCeEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            34555555555555554 45555555555555444

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.73  E-value=7.1e-08  Score=83.38  Aligned_cols=70  Identities=19%  Similarity=0.349  Sum_probs=37.5

Q ss_pred             eceEECCCCEECCCcEEe--ce--EECC---------------CCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCC
Q 020813          244 KRSVIGRHCRIGSNVKVV--NS--VVMN---------------HVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQG  302 (321)
Q Consensus       244 ~~svIg~~~~Ig~~~~I~--~s--iI~~---------------~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~  302 (321)
                      ...+||++|.|+++|+|.  +.  ...+               .+.+++++.+. .++||++|.||.++.|. ++.||++
T Consensus        55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~  134 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHG  134 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTT
T ss_pred             cCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCCCEECCC
Confidence            345777777777777662  10  1111               12233444443 45666666666666554 5666666


Q ss_pred             cEEcCCcEEcC
Q 020813          303 YVVSAGCEYKG  313 (321)
Q Consensus       303 ~~V~~~~~i~~  313 (321)
                      ++|++++.+..
T Consensus       135 ~~IgagsvV~~  145 (212)
T 1xat_A          135 AIIGSRALVTG  145 (212)
T ss_dssp             CEECTTCEECS
T ss_pred             CEECCCCEEcc
Confidence            66666665544

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.44  E-value=7.1e-07  Score=77.03  Aligned_cols=43  Identities=14%  Similarity=0.191  Sum_probs=28.1

Q ss_pred             ECCCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecC
Q 020813          254 IGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKD  296 (321)
Q Consensus       254 Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~  296 (321)
                      +++++.+. .++|+++|.||.+|.|. ++.||+++.||+++++..
T Consensus       101 i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~  145 (212)
T 1xat_A          101 AVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  145 (212)
T ss_dssp             CCCCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cccCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            34444443 45677777777777776 677777777777776654

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.40  E-value=5.2e-07  Score=77.77  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=18.0

Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      +++||++|.||.++.|. ++.||++++|++++.+.
T Consensus       113 ~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~  147 (209)
T 1mr7_A          113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV  147 (209)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             CcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEc
Confidence            35555555555555543 45555555555555544

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=98.16  E-value=8.2e-07  Score=79.64  Aligned_cols=70  Identities=10%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             CCCccceEEeEeHHHHHHHHhcc---ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK---DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~---~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      ++++++|+|+|++++|+.+....   ....++ .|+++.|++++                                    
T Consensus       199 ~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l-~d~i~~l~~~~------------------------------------  241 (281)
T 3juk_A          199 SNLAVIGRYILTPDIFEILSETKPGKNNEIQI-TDALRTQAKRK------------------------------------  241 (281)
T ss_dssp             CSEEEEEEEEECTTHHHHHHTCCCCGGGSCCH-HHHHHHHHHHS------------------------------------
T ss_pred             cceeEEEEEEECHHHHHHHHhcCCCCCCceeH-HHHHHHHHhcC------------------------------------
Confidence            56889999999999996443211   112234 78888887653                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  197 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~  197 (321)
                                         ++++|  ..++||.|+||+++|+++++.++..
T Consensus       242 -------------------~v~~~--~~~g~~~dIgt~~d~~~a~~~l~~~  271 (281)
T 3juk_A          242 -------------------RIIAY--QFKGKRYDCGSVEGYIEASNAYYKK  271 (281)
T ss_dssp             -------------------CCEEE--ECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred             -------------------CEEEE--EeCCeEEcCCCHHHHHHHHHHHHhc
Confidence                               35666  3468999999999999999988764

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=97.78  E-value=1.6e-05  Score=70.77  Aligned_cols=70  Identities=7%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             CCCccceEEeEeHHHHHHHHhccc---cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKD---KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~---~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      +.++++|+|+|++++|+ .+.+..   ...-...|+++.+++.+                                    
T Consensus       188 ~~~~~~Giy~~~~~~l~-~l~~~~~~~~ge~~l~d~l~~l~~~g------------------------------------  230 (269)
T 4ecm_A          188 SSYAVTGIYLYDSKVFS-YIKELKPSARGELEITDINNWYLKRG------------------------------------  230 (269)
T ss_dssp             CSEEEEEEEEECTTHHH-HHTSCCBCTTSCBCHHHHHHHHHHTT------------------------------------
T ss_pred             CcEEEEEEEEECHHHHH-hhhhcCCCCCCeeeHHHHHHHHHHcC------------------------------------
Confidence            56899999999999996 444211   11111256777776543                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  197 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~  197 (321)
                                         ++.+|  ..+++|.+++|+++|.++++.++..
T Consensus       231 -------------------~v~~~--~~~~~~~dIgt~~dl~~a~~~l~~~  260 (269)
T 4ecm_A          231 -------------------VLTYN--EMSGWWTDAGTHVSLQRANALARDI  260 (269)
T ss_dssp             -------------------CEEEE--ECCSCEEECSSHHHHHHHHHHTTTC
T ss_pred             -------------------CEEEE--EeCCEEEeCCCHHHHHHHHHHHHhc
Confidence                               34455  4578999999999999999988654

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=97.46  E-value=0.00012  Score=66.46  Aligned_cols=72  Identities=11%  Similarity=0.070  Sum_probs=50.6

Q ss_pred             cCCCccceEEeEeHHHHHHHHh--------c--cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhh
Q 020813           69 RADLMDAHMYAFNRSVLQEVLD--------Q--KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRI  138 (321)
Q Consensus        69 ~s~l~d~giYi~~~~vl~~~l~--------~--~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (321)
                      .++++++|+|+|++++|+.+..        .  +...+..-.|+++.|++++.                           
T Consensus       209 ~~~~i~~GiY~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~---------------------------  261 (303)
T 3pnn_A          209 EDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGR---------------------------  261 (303)
T ss_dssp             TTCEEEEEEEEECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTS---------------------------
T ss_pred             CCCEEEEEEEEECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCC---------------------------
Confidence            4679999999999999975532        1  11122233567777776541                           


Q ss_pred             hhcCCCCCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhc
Q 020813          139 LANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVI  195 (321)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l  195 (321)
                                                .++.+|  +.+++|.++|++++|.+++..+.
T Consensus       262 --------------------------~~v~~~--~~~g~w~dIgt~~dl~~a~~~l~  290 (303)
T 3pnn_A          262 --------------------------ASVEVL--DTTARWFGVTYSDDRPGVVAKLR  290 (303)
T ss_dssp             --------------------------CEEEEE--ECSCCCBCCSSGGGHHHHHHHHH
T ss_pred             --------------------------CcEEEE--EeCCceECCCCHHHHHHHHHHHH
Confidence                                      156677  45799999999999999987764

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=97.17  E-value=0.00027  Score=62.01  Aligned_cols=67  Identities=10%  Similarity=0.240  Sum_probs=49.8

Q ss_pred             CCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHE  149 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (321)
                      ++++++|+|+|++++|+ .+.+  ...++..|+++.+++++                                       
T Consensus       184 ~~~~~~Giy~~~~~~l~-~l~~--~~~~~~~~~i~~~~~~~---------------------------------------  221 (259)
T 1tzf_A          184 GAMINGGFFVLNPSVID-LIDN--DATTWEQEPLMTLAQQG---------------------------------------  221 (259)
T ss_dssp             SCCEECCCEEECGGGGG-GCCS--TTCCTTTHHHHHHHHTT---------------------------------------
T ss_pred             CceEEEEEEEeCHHHHH-hhcc--cccccHHHHHHHHHHcC---------------------------------------
Confidence            46899999999999985 4332  12345578888886643                                       


Q ss_pred             cccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhcc
Q 020813          150 LYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIG  196 (321)
Q Consensus       150 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~  196 (321)
                                      ++++|.  .+++|.+++|+++|.++++.+..
T Consensus       222 ----------------~v~~~~--~~~~~~dI~t~~d~~~a~~~~~~  250 (259)
T 1tzf_A          222 ----------------ELMAFE--HPGFWQPMDTLRDKVYLEGLWEK  250 (259)
T ss_dssp             ----------------CEEEEE--ECSCEEECCSHHHHHHHHHHHHT
T ss_pred             ----------------CEEEEE--eCcEEEeCCCHHHHHHHHHHHhc
Confidence                            345563  35799999999999999988764

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.14  E-value=0.00065  Score=61.97  Aligned_cols=71  Identities=13%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             CCCccceEEeEeHHHHHHHHhcccc---CCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCC
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQKDK---FQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPS  146 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~~~---~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (321)
                      +.++++|+|+|++++|+.+.....+   ...+ .|+++.+++++                                    
T Consensus       210 ~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l-~d~i~~l~~~g------------------------------------  252 (323)
T 2pa4_A          210 SRLAATGRYLLDRKIFDALRRITPGAGGELQL-TDAIDLLIDEG------------------------------------  252 (323)
T ss_dssp             CSEEEEEEEEEETHHHHHHHHCCCCGGGCCCH-HHHHHHHHHTT------------------------------------
T ss_pred             ccEEEEEEEEECHHHHHHHHhhCCCCCCeEeH-HHHHHHHHHcC------------------------------------
Confidence            4578999999999998654331111   1112 57788877654                                    


Q ss_pred             ccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccc
Q 020813          147 FHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGE  197 (321)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~  197 (321)
                                        .++.+|  ..+++|.|++|+++|.++++.++..
T Consensus       253 ------------------~~v~~~--~~~g~w~DIgt~~dl~~a~~~~~~~  283 (323)
T 2pa4_A          253 ------------------HPVHIV--IHQGKRHDLGNPGGYIPACVDFGLS  283 (323)
T ss_dssp             ------------------CCEEEE--ECCSEEEECSSHHHHHHHHHHHHHT
T ss_pred             ------------------CCEEEE--EeCCeEEeCCCHHHHHHHHHHHhhc
Confidence                              245666  3467999999999999999877644

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=97.13  E-value=0.00045  Score=62.28  Aligned_cols=29  Identities=7%  Similarity=-0.098  Sum_probs=23.1

Q ss_pred             eEEEEecCccceeeccCHHHHHHHchhhccc
Q 020813          167 CCVYIASNSKYCVRLNSIQAFMDINRDVIGE  197 (321)
Q Consensus       167 v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~  197 (321)
                      +.+|  ..+++|.|+||+++|+++++.++..
T Consensus       254 v~~~--~~~~~~~DIgt~~d~~~a~~~~~~~  282 (302)
T 2e3d_A          254 VEAY--HMKGKSHDCGNKLGYMQAFVEYGIR  282 (302)
T ss_dssp             EEEE--ECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEE--EeCCeEEcCCCHHHHHHHHHHHHhc
Confidence            5566  4467999999999999999776543

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=97.08  E-value=0.00046  Score=62.10  Aligned_cols=31  Identities=10%  Similarity=-0.092  Sum_probs=24.5

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchhhcccc
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRDVIGEA  198 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~  198 (321)
                      ++++|  ..+++|.|+||+++|.++++.++...
T Consensus       251 ~v~~~--~~~~~w~dIgt~~dl~~a~~~~~~~~  281 (297)
T 2ux8_A          251 PFHGV--TFQGTRYDCGDKAGFIQANLAVALSR  281 (297)
T ss_dssp             CEEEE--ECSSEEEETTSHHHHHHHHHHHHHHC
T ss_pred             CEEEE--EecceEEeCCCHHHHHHHHHHHHhcC
Confidence            45666  45679999999999999998776543

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=96.91  E-value=0.0016  Score=57.44  Aligned_cols=70  Identities=14%  Similarity=0.164  Sum_probs=47.6

Q ss_pred             cCCCccceEEeEeHH-HHH----HHHhccc----cCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhh
Q 020813           69 RADLMDAHMYAFNRS-VLQ----EVLDQKD----KFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRIL  139 (321)
Q Consensus        69 ~s~l~d~giYi~~~~-vl~----~~l~~~~----~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (321)
                      .++++++|+|+|++. .|.    .+++++.    ..+..-.|+++.|++++                             
T Consensus       166 ~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g-----------------------------  216 (255)
T 4evw_A          166 ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKG-----------------------------  216 (255)
T ss_dssp             SSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTT-----------------------------
T ss_pred             ccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCC-----------------------------
Confidence            367999999999985 232    2232211    23334568999998876                             


Q ss_pred             hcCCCCCccccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchh
Q 020813          140 ANASTPSFHELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRD  193 (321)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~  193 (321)
                                               .++.+|.. ..++|.++||+++|.++...
T Consensus       217 -------------------------~~v~~~~~-~~~~w~digt~~~l~~~~~~  244 (255)
T 4evw_A          217 -------------------------LNIHYHLI-ARHEVIFCGVPDEYTDFLRQ  244 (255)
T ss_dssp             -------------------------CCEEEEEC-CGGGCEECCSHHHHHHHHHC
T ss_pred             -------------------------CEEEEEEe-ccccEEECCCHHHHHHHHhc
Confidence                                     24566633 24899999999999988554

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=95.67  E-value=0.0036  Score=56.61  Aligned_cols=26  Identities=12%  Similarity=0.097  Sum_probs=9.7

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchh
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRD  193 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~  193 (321)
                      ++.++  +.+++|.++||+++|.+++..
T Consensus       256 ~v~~~--~~~~~w~digt~~~l~~~~~~  281 (308)
T 2qh5_A          256 KIKMV--ELNAKWSDLGNFNALFEEAAN  281 (308)
T ss_dssp             CEEEE--ECCSCCBC-------------
T ss_pred             cEEEE--ECCCceeCCCCHHHHHHHhhc
Confidence            56666  557899999999999988754

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=94.38  E-value=0.051  Score=47.45  Aligned_cols=29  Identities=10%  Similarity=0.138  Sum_probs=22.1

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchhhc
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRDVI  195 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l  195 (321)
                      ++.++.. ..++|.+|+|+++|.++++.+.
T Consensus       223 ~v~~~~~-~~~~~~~Idt~edl~~a~~~l~  251 (254)
T 1jyk_A          223 DVYVEEL-EGNSIYEIDSVQDYRKLEEILK  251 (254)
T ss_dssp             CEEEEEC-CTTSEEECCSHHHHHHHHHHHC
T ss_pred             CeEEEEe-cCCeEEEcCCHHHHHHHHHHhh
Confidence            4556633 3479999999999999987653

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=94.30  E-value=0.016  Score=53.09  Aligned_cols=23  Identities=17%  Similarity=0.078  Sum_probs=19.5

Q ss_pred             eeEEEEecCccceeeccCHHHHHHH
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDI  190 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~  190 (321)
                      +++++  +.+++|.|+|++++|+++
T Consensus       248 ~v~v~--~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          248 KVRVV--KADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             CEEEE--ECSSCCBCCCSHHHHHHH
T ss_pred             eEEEE--EecCCCcCCCCHHHHHhh
Confidence            45555  678999999999999999

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=94.13  E-value=0.075  Score=47.63  Aligned_cols=21  Identities=5%  Similarity=0.142  Sum_probs=17.9

Q ss_pred             ccc-eeeccCHHHHHHHchhhc
Q 020813          175 SKY-CVRLNSIQAFMDINRDVI  195 (321)
Q Consensus       175 ~~~-w~~i~t~~~y~~~~~~~l  195 (321)
                      .+| |.|+||+++|.+++..+.
T Consensus       220 ~g~~w~Digt~edl~~a~~~~~  241 (296)
T 1mc3_A          220 RGFAWLDTGTHDSLIEASTFVQ  241 (296)
T ss_dssp             TTCEEEECCSHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCHHHHHHHHHHHH
Confidence            465 999999999999987653

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=93.99  E-value=0.054  Score=47.20  Aligned_cols=29  Identities=14%  Similarity=0.051  Sum_probs=21.9

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchhhc
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRDVI  195 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l  195 (321)
                      ++.++. ....+|.+|+|+++|.+++..+-
T Consensus       220 ~i~~~~-~~~~~~~~idt~~dl~~a~~~~~  248 (252)
T 3oam_A          220 KIHVAV-ALEAPPAGVDTPEDLEVVRRIVA  248 (252)
T ss_dssp             CEEEEE-CSSCCCCCCCSHHHHHHHHHHHH
T ss_pred             eEEEEE-ecCCCCCCCCCHHHHHHHHHHHH
Confidence            566653 24568999999999999987653

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=93.93  E-value=0.1  Score=46.61  Aligned_cols=21  Identities=5%  Similarity=0.240  Sum_probs=17.6

Q ss_pred             Cccc-eeeccCHHHHHHHchhh
Q 020813          174 NSKY-CVRLNSIQAFMDINRDV  194 (321)
Q Consensus       174 ~~~~-w~~i~t~~~y~~~~~~~  194 (321)
                      .++| |.|++|+++|.+++..+
T Consensus       218 ~~g~~w~Digt~edl~~a~~~~  239 (293)
T 1fxo_A          218 GRGYAWLDTGTHDSLLEAGQFI  239 (293)
T ss_dssp             CTTSEEEECCSHHHHHHHHHHH
T ss_pred             CCCCEEEcCCCHHHHHHHHHHH
Confidence            3465 99999999999998765

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=93.60  E-value=0.12  Score=46.19  Aligned_cols=20  Identities=0%  Similarity=0.082  Sum_probs=17.2

Q ss_pred             ccc-eeeccCHHHHHHHchhh
Q 020813          175 SKY-CVRLNSIQAFMDINRDV  194 (321)
Q Consensus       175 ~~~-w~~i~t~~~y~~~~~~~  194 (321)
                      .+| |.|++|+++|.+++..+
T Consensus       220 ~g~~w~Digt~edl~~a~~~~  240 (295)
T 1lvw_A          220 RGMAWLDTGTHDGLLEASSFI  240 (295)
T ss_dssp             TTCEECCCSSHHHHHHHHHHH
T ss_pred             CCCeEEeCCCHHHHHHHHHHH
Confidence            465 99999999999998765

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=93.41  E-value=0.055  Score=46.16  Aligned_cols=27  Identities=15%  Similarity=0.251  Sum_probs=21.2

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                      ++.+|.  .+++|.+|+|+++|..++..+
T Consensus       205 ~v~~~~--~~~~~~dI~t~~dl~~a~~~~  231 (234)
T 2y6p_A          205 KIKVLI--TENYYHGVDTEEDLKIVEEKL  231 (234)
T ss_dssp             CCEEEE--CCSCCCCCCSHHHHHHHHHHC
T ss_pred             eEEEEE--eCCcccCCCCHHHHHHHHHHH
Confidence            456664  458999999999999987653

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=92.99  E-value=0.045  Score=50.03  Aligned_cols=25  Identities=8%  Similarity=-0.064  Sum_probs=19.7

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHch
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINR  192 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~  192 (321)
                      +++++  +.+++|.|+||+++|+++..
T Consensus       243 ~v~v~--~~~~~W~DvGt~~~l~~~~~  267 (337)
T 2cu2_A          243 RVRVV--LGRFPWDDVGNWRALERVFS  267 (337)
T ss_dssp             SEEEE--EECSCEECCCSTTHHHHHHT
T ss_pred             cEEEE--EeCCcEEcCCCHHHHHHHhh
Confidence            45555  56789999999999998843

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=92.46  E-value=0.12  Score=45.24  Aligned_cols=27  Identities=4%  Similarity=-0.021  Sum_probs=21.3

Q ss_pred             eeEEEEecCccc-eeeccCHHHHHHHchhh
Q 020813          166 KCCVYIASNSKY-CVRLNSIQAFMDINRDV  194 (321)
Q Consensus       166 ~v~~~i~~~~~~-w~~i~t~~~y~~~~~~~  194 (321)
                      ++.++  ..+.+ |.+|+|++++.+++..+
T Consensus       221 ~I~~~--~~~~~~~~~IdtpeDL~~a~~~l  248 (253)
T 4fcu_A          221 RIAIA--VAEANLPPGVDTQADLDRLNNMP  248 (253)
T ss_dssp             CEEEE--ECSSCCCCCCCSHHHHHHHHTSC
T ss_pred             ceEEE--EeCCCCCCCCCCHHHHHHHHHHH
Confidence            56666  34678 99999999999997654

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=91.80  E-value=0.12  Score=45.41  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.2

Q ss_pred             CCCccceEEeEeHHHHHHHHh
Q 020813           70 ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~   90 (321)
                      +.+...|||.|++++|+.+..
T Consensus       186 ~~~~~~GiY~y~~~~l~~~~~  206 (256)
T 3tqd_A          186 SHYRHVGIYAYRVGFLEEYLS  206 (256)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHH
T ss_pred             cceEEEEEEEcCHHHHHHHHh
Confidence            568999999999999987754

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=91.34  E-value=0.11  Score=44.66  Aligned_cols=27  Identities=0%  Similarity=-0.049  Sum_probs=21.0

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                      ++.++.  .+++|.+|+|+++|..+...+
T Consensus       211 ~v~~~~--~~~~~~dIdtp~Dl~~a~~~l  237 (245)
T 1h7e_A          211 NIRTFE--VAATGPGVDTPACLEKVRALM  237 (245)
T ss_dssp             CEEEEE--CCCCCCCSSSHHHHHHHHHHH
T ss_pred             eEEEEE--eCCCCCCCCCHHHHHHHHHHH
Confidence            456664  348999999999999887654

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=90.30  E-value=0.3  Score=42.95  Aligned_cols=21  Identities=10%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             CCCccceEEeEeHHHHHHHHh
Q 020813           70 ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~   90 (321)
                      +.+.++|+|+|++++|+.+..
T Consensus       193 ~~~~~~GiY~y~~~~l~~~~~  213 (264)
T 3k8d_A          193 NFLRHLGIYGYRAGFIRRYVN  213 (264)
T ss_dssp             CCEEECSEEEEEHHHHHHHHH
T ss_pred             cceEEEEEEEECHHHHHHHHh
Confidence            568999999999999987754

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=88.92  E-value=0.34  Score=42.13  Aligned_cols=29  Identities=7%  Similarity=0.103  Sum_probs=22.4

Q ss_pred             eeEEEEecCc-cceeeccCHHHHHHHchhhcc
Q 020813          166 KCCVYIASNS-KYCVRLNSIQAFMDINRDVIG  196 (321)
Q Consensus       166 ~v~~~i~~~~-~~w~~i~t~~~y~~~~~~~l~  196 (321)
                      ++.++.  .+ .+|.+|+|+++|..++..+..
T Consensus       224 ~v~~~~--~~~~~~~dI~tpeDl~~a~~~l~~  253 (262)
T 1vic_A          224 RIHVEL--AKEVPAVGVDTAEDLEKVRAILAA  253 (262)
T ss_dssp             CEEEEE--CSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             eEEEEE--eCCCCCCCCCCHHHHHHHHHHHHh
Confidence            456663  34 799999999999999877643

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=87.29  E-value=0.42  Score=40.59  Aligned_cols=18  Identities=11%  Similarity=0.233  Sum_probs=8.9

Q ss_pred             ccceeeccCHHHHHHHch
Q 020813          175 SKYCVRLNSIQAFMDINR  192 (321)
Q Consensus       175 ~~~w~~i~t~~~y~~~~~  192 (321)
                      .++|.+++|+++|.+++.
T Consensus       213 ~~~~~dI~tpeDl~~a~~  230 (232)
T 2xme_A          213 GELWMDVDTKEDVRRANR  230 (232)
T ss_dssp             SCCEEEEECC--------
T ss_pred             CCCEEeCCCHHHHHHHHh
Confidence            468999999999988764

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=84.32  E-value=1.2  Score=37.40  Aligned_cols=27  Identities=0%  Similarity=0.055  Sum_probs=20.4

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHchhh
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                      ++..+  +.+++|.+|+|+++|..++..+
T Consensus       207 ~v~~~--~~~~~~~dIdtpeDl~~a~~~~  233 (236)
T 2vsh_A          207 DVALA--KGEYSNLKITTVTDLKIAKSMI  233 (236)
T ss_dssp             CEEEE--ECCTTCCCCCSHHHHHHHHHHT
T ss_pred             CEEEE--ECCccccCcCCHHHHHHHHHHh
Confidence            34555  3467999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	1e-08
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	6e-04
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	3e-08
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	4e-07
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	5e-05
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	3e-06
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	1e-04
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	3e-05
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	8e-05
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	9e-05
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	6e-04
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.004

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 11/128 (8%)

Query: 170 YIASNSKYCVRLNSIQA---FMDINRDVIG-----EAN--HLSGYNFSAQNNIIHPSAEL 219
           Y     K  V L  + A   F D+     G     +             +N +     E+
Sbjct: 13  YQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEI 72

Query: 220 GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSV-VMNHVTIGDGCSIQ 278
                +   C L    ++GD   + R+ I    RI  NV + +S         GD   + 
Sbjct: 73  TGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLN 132

Query: 279 GSVICSNA 286
            S I +  
Sbjct: 133 QSEILAIQ 140

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 9/123 (7%)

Query: 157 GSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPS 216
             A V           +N   C           I          L   +  A++ +I  +
Sbjct: 182 HRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGN 241

Query: 217 AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCS 276
             L     VG H  +  G  +     V    I  H  I   +     ++   V I    +
Sbjct: 242 CVLKHHVLVGGHAEVR-GGPILLDDRVL---IEGHACIQGEI-----LIERQVEISGRAA 292

Query: 277 IQG 279
           +  
Sbjct: 293 VIA 295

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 212 IIHPS-AELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVT 270
           +  P+  +L    T G    +     +          +G   +IG+   + NSV+ +   
Sbjct: 3   LRDPARFDLRGTLTHGRDVEIDTNVIIEGNV-----TLGHRVKIGTGCVIKNSVIGDDCE 57

Query: 271 IGDGCSIQGSVICSNAQL 288
           I     ++ + + +   +
Sbjct: 58  ISPYTVVEDANLAAACTI 75

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
                E+ +   +  +  LG   ++G  C +K SVIG  C I     V ++ +    TIG
Sbjct: 17  HGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 248 IGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA 307
            GR   I +NV     ++  +VT+G    I    +  N+ + +   +    V +   ++A
Sbjct: 17  HGRDVEIDTNV-----IIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAA 71

Query: 308 GC 309
            C
Sbjct: 72  AC 73

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMN 267
           A+  II P AE+     +G  C++G+G ++ +        +  +  +  +  V  +  + 
Sbjct: 4   AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGV-----KLHNNVTLQGHTFVGKNTEIF 58

Query: 268 H-VTIGDGCSI 277
               +G     
Sbjct: 59  PFAVLGTQPQD 69

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 17/103 (16%)

Query: 213 IHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIG 272
           I  +A       + P   + +G ++G+ C     VIG   ++   V      + N+VT+ 
Sbjct: 3   IAKTA------IISPKAEINKGVEIGEFC-----VIGDGVKLDEGV-----KLHNNVTLQ 46

Query: 273 DGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE 314
               +   + I   A L  +      +     ++        E
Sbjct: 47  GHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIRE 89

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 209 QNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH 268
           ++  +HP+A +    ++G +  +G    +G         IG    + S+V     VV  H
Sbjct: 4   KSAFVHPTAIVEEGASIGANAHIGPFCIVGPHV-----EIGEGTVLKSHV-----VVNGH 53

Query: 269 VTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGC 309
             IG    I             + A +  +V  G       
Sbjct: 54  TKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRE 94

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-RSVIGRHCRIGSNVKVVNSVVM-- 266
             I+   A +G+   +GP C++G   ++G+   +K   V+  H +IG + ++     +  
Sbjct: 11  TAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGE 70

Query: 267 -----------NHVTIGDGCSIQGSVICSNA 286
                        V IGD   I+ SV     
Sbjct: 71  VNQDLKYAGEPTRVEIGDRNRIRESVTIHRG 101

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV--NSVVMNH 268
             ++P     S   + P     E  ++G+      S          + +++    ++ + 
Sbjct: 6   MKMYPIEGNKSVQFIKPILEKLENVEVGE-----YSYYDSKNGETFDKQILYHYPILNDK 60

Query: 269 VTIGDGCSI 277
           + IG  CSI
Sbjct: 61  LKIGKFCSI 69

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 239 DKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQ 298
               V  SVIG  C I +   + +SVV     I +G  I+ S++      +     K   
Sbjct: 8   LDADVTDSVIGEGCVIKNCK-IHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLA 66

Query: 299 VGQGYVVSAGC 309
                 +  G 
Sbjct: 67  AKGSVPIGIGK 77

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 9/57 (15%), Positives = 22/57 (38%)

Query: 212 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH 268
            I    E+ S+  +  +  L   +++G +  +          IG+   + NS++   
Sbjct: 10  YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEES 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.63
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.53
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.53
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.51
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.51
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.5
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.46
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.45
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.44
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.41
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.4
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.39
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.38
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.35
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.3
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.26
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.26
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.19
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.19
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.14
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.1
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.1
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.08
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.02
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.02
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	98.89
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	98.89
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	98.87
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.86
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.75
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.75
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.7
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.66
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.54
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.48
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	98.4
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	98.02
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	97.27
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	95.99
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	95.29
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	89.63

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.63  E-value=1.9e-15  Score=129.10  Aligned_cols=103  Identities=14%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe-----ceEECCCCEECCCcEEe------------------------
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK-----RSVIGRHCRIGSNVKVV------------------------  261 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~-----~svIg~~~~Ig~~~~I~------------------------  261 (321)
                      ..|+|+|+|++++.|.+++.||++|.|+.+|.|+     +.+||++|.|++++.|.                        
T Consensus        23 p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~  102 (210)
T d1qrea_          23 PVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEY  102 (210)
T ss_dssp             CEECTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEE
T ss_pred             CccCCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccccc
Confidence            3456666666666555555666666666666652     35777777777777772                        


Q ss_pred             ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCCcEEcC
Q 020813          262 NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       262 ~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~  313 (321)
                      .+.|+++|.||+++.|. ++.||+++.||.++++.++.||++++|++++.+.+
T Consensus       103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g  155 (210)
T d1qrea_         103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIG  155 (210)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEES
T ss_pred             ceeeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCcEecC
Confidence            36788888888888886 67888888888888877777777777776666554

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.53  E-value=1.2e-14  Score=115.42  Aligned_cols=78  Identities=26%  Similarity=0.556  Sum_probs=56.6

Q ss_pred             CCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCC-------------------CEECCCc
Q 020813          215 PSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNH-------------------VTIGDGC  275 (321)
Q Consensus       215 p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~-------------------v~Ig~~~  275 (321)
                      |++++. ++.+ .+++|+++|.|+ ++.|.+|+||++|.||+++.|.+++++++                   +.||++|
T Consensus         3 Pp~~i~-~~~i-~~s~Ig~g~~I~-~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~   79 (135)
T d1yp2a1           3 PPSKML-DADV-TDSVIGEGCVIK-NCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNC   79 (135)
T ss_dssp             CCEEEE-EEEE-EEEEECTTCEEE-EEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTC
T ss_pred             CCcccC-CCEE-EeCEECCCCEEe-CCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcce
Confidence            344442 2444 357777777775 45667788888888888888887776654                   6788888


Q ss_pred             EEeceEECCCCEECcCcEec
Q 020813          276 SIQGSVICSNAQLQERVALK  295 (321)
Q Consensus       276 ~I~~~iI~~~~~Ig~~~~i~  295 (321)
                      .|++++|+++++||+++++.
T Consensus        80 ~I~~~iIg~~~~IG~g~~i~   99 (135)
T d1yp2a1          80 HIKRAIIDKNARIGDNVKII   99 (135)
T ss_dssp             EEESEEECTTCEECTTCEEC
T ss_pred             EeccceecCCCEECCCcEEC
Confidence            88888888888888888873

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.53  E-value=8.4e-14  Score=118.73  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=65.4

Q ss_pred             ceEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCC
Q 020813          245 RSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       245 ~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~  314 (321)
                      .++||++|.||.++.|. ++.|+++|.||.++.|.++.|++++.|++++.+.+++|++++.|++++.+.+.
T Consensus       103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~~vIg~~svv~g~~i~~g~~I~~g~~v~g~  173 (210)
T d1qrea_         103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQ  173 (210)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEECTTBEECTTCEECSH
T ss_pred             ceeeccccccccccccccCCcccCCcEeeCCccccccccccCcEEecCcEecCcEeCCCcEECCCcEEeCC
Confidence            37899999999999996 68999999999999999999999999999999999999999999999998774

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.51  E-value=1.2e-13  Score=121.68  Aligned_cols=37  Identities=24%  Similarity=0.662  Sum_probs=18.1

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK  244 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~  244 (321)
                      ++.++|+|+++|++++.|+++|+|++++.||++|.|+
T Consensus         9 ~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~   45 (262)
T d2jf2a1           9 HPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK   45 (262)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTEEECTTCEEC
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEe
Confidence            3344445555555555555555555444444444443

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.51  E-value=1.4e-13  Score=113.55  Aligned_cols=106  Identities=17%  Similarity=0.275  Sum_probs=82.9

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec----eEECCCCEECCCcEEec-----eEECCCCEECCCcEEe
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR----SVIGRHCRIGSNVKVVN-----SVVMNHVTIGDGCSIQ  278 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~----svIg~~~~Ig~~~~I~~-----siI~~~v~Ig~~~~I~  278 (321)
                      .....|+++++|++.+.|.+++.||++|.|+.+|.|..    ..||+++.+++++.+..     +++++++.++.++.+.
T Consensus        10 ~~~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~   89 (172)
T d1xhda_          10 EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH   89 (172)
T ss_dssp             TBCCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE
T ss_pred             CcCCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccc
Confidence            34456777777777777777777888888888887753    58999999999998874     6789999999999998


Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++.|++++.|+.++.|. ++.||++++|++++.+.+
T Consensus        90 ~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~  125 (172)
T d1xhda_          90 SCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQ  125 (172)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ccccccceEEecccEeeCCcEEcCcccccceEEEee
Confidence            88888888888888774 666777766666666654

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.50  E-value=4.2e-13  Score=112.79  Aligned_cols=99  Identities=14%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             CeeeCCCCeeCCCcEEC--CCCEECCCCEECCCCeEeceEECCCCEECCCcEEe-ceEECCCCEECCCcEEe-ceEECCC
Q 020813          210 NNIIHPSAELGSKTTVG--PHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSN  285 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~--~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~  285 (321)
                      ..+|+|+|.|++++.++  .++.|+++++|+.++     .||++|.|+.++.|. ++.|++++.+++++.+. ++.|+++
T Consensus        74 ~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~-----~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~  148 (193)
T d3bswa1          74 VNLIHKSALISPSAIVEENAGILIMPYVVINAKA-----KIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKN  148 (193)
T ss_dssp             CCEECTTCEECTTSEECTTSCCEECTTCEECTTC-----EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             ceecCCCcEEeeeeEEccccCceEeeeeeecCCc-----eeeeccccccccccceeeeccccccccccccccccceeecc
Confidence            34677777777777663  356666666666655     455555555555554 45666666666666665 5667777


Q ss_pred             CEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          286 AQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       286 ~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      +.||.++.|. ++.||++++|++|+.+..
T Consensus       149 ~~IG~~s~I~~~v~Ig~~~~IgagsvV~~  177 (193)
T d3bswa1         149 CFLGINSCVLPNLSLADDSILGGGATLVK  177 (193)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccCCceeeEcCCeEECCCCEECCCCEECc
Confidence            7777776554 666666666666666643

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.46  E-value=6.5e-13  Score=116.72  Aligned_cols=53  Identities=23%  Similarity=0.545  Sum_probs=29.9

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe------c-eEECCCCEECCCcEE
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK------R-SVIGRHCRIGSNVKV  260 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~------~-svIg~~~~Ig~~~~I  260 (321)
                      ++.+.|+|+|.|++++.|+++|+|+++++|+++|.|.      . +.||++|.|.+++.|
T Consensus         4 h~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~I   63 (259)
T d1j2za_           4 AKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL   63 (259)
T ss_dssp             CTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEE
Confidence            3455666666666666666666666655555555554      2 445555554444444

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.1e-13  Score=99.01  Aligned_cols=63  Identities=13%  Similarity=0.278  Sum_probs=43.9

Q ss_pred             CCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEeceEECCCCEECc
Q 020813          228 HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQGSVICSNAQLQE  290 (321)
Q Consensus       228 ~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~  290 (321)
                      ++.||++|.|++++.|+. +.||+||+||++|.|.+|.|+++++|++++.|++|+|++++.||+
T Consensus        14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGP   77 (78)
T d1fxja1          14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP   77 (78)
T ss_dssp             EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESC
T ss_pred             cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECc
Confidence            344444444444444443 677888888888888888888888888888887777777777774

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.44  E-value=1.3e-12  Score=114.98  Aligned_cols=33  Identities=18%  Similarity=0.450  Sum_probs=13.4

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeE
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV  243 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I  243 (321)
                      ++|+|+|.|++++.|++++.|+++|+|++++.|
T Consensus         6 ~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~I   38 (262)
T d2jf2a1           6 AFVHPTAIVEEGASIGANAHIGPFCIVGPHVEI   38 (262)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTEEE
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            334444444444444444444444444444333

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.41  E-value=1.8e-12  Score=108.83  Aligned_cols=124  Identities=19%  Similarity=0.304  Sum_probs=88.0

Q ss_pred             eeccCHHHHHHHchhhccccccCCCcccccCCeeeCCCCeeC--CCcEECCCCEECCCCEECCCCeEec-eEECCCCEEC
Q 020813          179 VRLNSIQAFMDINRDVIGEANHLSGYNFSAQNNIIHPSAELG--SKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIG  255 (321)
Q Consensus       179 ~~i~t~~~y~~~~~~~l~~~~~~~~~~~~~~~~~i~p~a~i~--~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig  255 (321)
                      ..+|+...-.+....+......  ...+..+.+.|.+++.++  .++.|++++.|++++.||++|.|.. ++|+++|.||
T Consensus        51 iaIG~~~~R~~~~~~~~~~~~~--~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  128 (193)
T d3bswa1          51 IAIGNNEIRKKIYQKISENGFK--IVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  128 (193)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCC--BCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEECCcHHHHHHHHHhhhhccc--cceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence            4466654433333333222222  223567788899998884  4789999999999999999998865 8889999999


Q ss_pred             CCcEEe-ceEECCCCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCCc
Q 020813          256 SNVKVV-NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGC  309 (321)
Q Consensus       256 ~~~~I~-~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~  309 (321)
                      +++.+. ++.+..+++||++|+|+ +++|.++++||     ++|+||++++|..+.
T Consensus       129 ~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig-----~~~~IgagsvV~~dv  179 (193)
T d3bswa1         129 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLA-----DDSILGGGATLVKNQ  179 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC-----TTCEECTTCEECSCB
T ss_pred             ccccccccccccccceeeccccCCceeeEcCCeEEC-----CCCEECCCCEECcCC
Confidence            988887 56677788888888887 77777777777     456666666665553

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.40  E-value=3.1e-12  Score=106.77  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcC
Q 020813          280 SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~  313 (321)
                      ++|+++++||.++.+ .++.||++++|++++.+..
T Consensus       143 ~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtk  177 (196)
T d1g97a1         143 TVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITK  177 (196)
T ss_dssp             EEECTTCEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred             eEEecCCEEeeeeEEcCCcEECCCCEECCCCEECc
Confidence            446677777777655 3677777777777777654

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=8.7e-13  Score=94.18  Aligned_cols=62  Identities=26%  Similarity=0.473  Sum_probs=57.3

Q ss_pred             eEECCCCEECCCcEEe-ceEECCCCEECCCcEEeceEECCCCEECcCcEecCeEECCCcEEcC
Q 020813          246 SVIGRHCRIGSNVKVV-NSVVMNHVTIGDGCSIQGSVICSNAQLQERVALKDCQVGQGYVVSA  307 (321)
Q Consensus       246 svIg~~~~Ig~~~~I~-~siI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~  307 (321)
                      ..||++|.|++++.|+ ++.|++||+||++|.|.+|+|++++.|++++.|++|+||+++.|++
T Consensus        15 v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGP   77 (78)
T d1fxja1          15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGP   77 (78)
T ss_dssp             EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESC
T ss_pred             EEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECc
Confidence            6789999999999998 6789999999999999999999999999999999999999999986

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=3.4e-12  Score=105.11  Aligned_cols=106  Identities=22%  Similarity=0.306  Sum_probs=66.9

Q ss_pred             ccccCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEe----ceEECCCCEECCCcEEec-----eEECCC-------
Q 020813          205 NFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVK----RSVIGRHCRIGSNVKVVN-----SVVMNH-------  268 (321)
Q Consensus       205 ~~~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~----~svIg~~~~Ig~~~~I~~-----siI~~~-------  268 (321)
                      .+.+.+..|++++.|++++.|.+++.||++|.|+++|.|.    ...|++++.++..+.+..     ..++.+       
T Consensus         5 ~~~g~~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (173)
T d1v3wa_           5 EINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNA   84 (173)
T ss_dssp             CBTTBCCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTC
T ss_pred             ECCCCCCEECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeee
Confidence            3445566788888888888888888888888888888885    357999999999888752     223333       


Q ss_pred             ----CEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEEcCCcEEcCCe
Q 020813          269 ----VTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVVSAGCEYKGES  315 (321)
Q Consensus       269 ----v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V~~~~~i~~~~  315 (321)
                          +.||++|+|+ +|+|++++.||+     +|+||.+++|.+++.+++..
T Consensus        85 ~~~~~~Ig~~~~ig~~~~i~~gv~Ig~-----~~vIgagsvV~~~~~i~~~~  131 (173)
T d1v3wa_          85 MVHGAKVGNYVIIGISSVILDGAKIGD-----HVIIGAGAVVPPNKEIPDYS  131 (173)
T ss_dssp             EEESCEECSSEEECTTCEECTTCEECS-----SEEECTTCEECTTCEECTTE
T ss_pred             eeeeeecCCcccccceeeecCCEEEcc-----eeEEcCCcEEeCCeEeCCCC
Confidence                4444444444 444444444443     34444444444444444433

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.35  E-value=7.2e-12  Score=109.87  Aligned_cols=36  Identities=8%  Similarity=0.145  Sum_probs=23.3

Q ss_pred             ceEECCCCEECcCcEec-CeEECCCcEEcCCcEEcCC
Q 020813          279 GSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       279 ~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~~  314 (321)
                      +++|+++|+||.++.|. ++.||++++|++++.+...
T Consensus       139 ~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kd  175 (259)
T d1j2za_         139 HIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD  175 (259)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB
T ss_pred             cccccccceecceeeeecccEeccceeeeeeeeeccc
Confidence            45666666666666554 5677777777776666553

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=7.5e-12  Score=105.47  Aligned_cols=80  Identities=21%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             ccCCeeeCCCCee--CCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEece-------------EECCCCEE
Q 020813          207 SAQNNIIHPSAEL--GSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNS-------------VVMNHVTI  271 (321)
Q Consensus       207 ~~~~~~i~p~a~i--~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~s-------------iI~~~v~I  271 (321)
                      ++++++|.|++++  |.++.||++++|+.+|+|.+++   ...||++|.|++++.|...             .+...++|
T Consensus        57 iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~---~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~I  133 (200)
T d1krra_          57 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDY---TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITI  133 (200)
T ss_dssp             CCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSS---CEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEE
T ss_pred             CCCCCEEcCCEEEecCCccEECCccEECceEEEecCC---CcEeCCCccccceeEEecccccceecccccceeecceEEE
Confidence            3456777777766  4556666666666666665443   2489999999999998643             22334455


Q ss_pred             CCCcEEe-ceEECCCCEEC
Q 020813          272 GDGCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       272 g~~~~I~-~~iI~~~~~Ig  289 (321)
                      |++|+|+ +++|.++++||
T Consensus       134 gd~v~IG~~~~I~~Gv~IG  152 (200)
T d1krra_         134 GNNVWIGSHVVINPGVTIG  152 (200)
T ss_dssp             CTTCEECTTCEECTTCEEC
T ss_pred             ccCcccceeeecccccccC
Confidence            5555554 55555555555

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.26  E-value=2e-11  Score=100.30  Aligned_cols=97  Identities=15%  Similarity=0.240  Sum_probs=58.6

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEE---------------CCCCeEec-----eEECCCCEECCCcEEeceEEC
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQM---------------GDKCSVKR-----SVIGRHCRIGSNVKVVNSVVM  266 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I---------------~~~~~I~~-----svIg~~~~Ig~~~~I~~siI~  266 (321)
                      ++.+++|+|.|.|.+++.||++|.|+++|+|               ++++.+..     ++||+++.++.++.+.++.|+
T Consensus        15 Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~   94 (172)
T d1xhda_          15 IASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIK   94 (172)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEEC
T ss_pred             ECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccc
Confidence            4455666666666555666665555555544               33333322     467777777777777777777


Q ss_pred             CCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCc
Q 020813          267 NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGY  303 (321)
Q Consensus       267 ~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~  303 (321)
                      +++.||.++.|. +++||++|.|++++.|. +..|++++
T Consensus        95 ~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~  133 (172)
T d1xhda_          95 KDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNT  133 (172)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             cceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCe
Confidence            777777777765 66666666666555543 23444443

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.26  E-value=2.5e-11  Score=101.13  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEECCCCEE
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVICSNAQL  288 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~~~~~I  288 (321)
                      ++.|++++.|++++.|++++.||++|.|++++.|+++.||++|.|.. ..+....+++++.||+++.+. ++.++.++.+
T Consensus        14 ~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~-~~i~~~~~g~~~~Ig~~~~i~~~~~i~~~~~i   92 (196)
T d1g97a1          14 DVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN-SMIEESSVADGVIVGPYAHIRPNSSLGAQVHI   92 (196)
T ss_dssp             TCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS-CEEESCEECTTCEECSSCEECSSCEECTTCEE
T ss_pred             CcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc-cceeeccccCcceeecceecccccccccceee
Confidence            33344444444444444444445555555555555555555555543 234445566777777777765 6666666666


Q ss_pred             CcCcEecCeEECCCcEEcCCcEE
Q 020813          289 QERVALKDCQVGQGYVVSAGCEY  311 (321)
Q Consensus       289 g~~~~i~~~iIg~~~~V~~~~~i  311 (321)
                      +..+.+....++..+.++....+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~i  115 (196)
T d1g97a1          93 GNFVEVKGSSIGENTKAGHLTYI  115 (196)
T ss_dssp             EEEEEEESCEECTTCEEEEEEEE
T ss_pred             cccccceeeecCcceEecceEEe
Confidence            65555544444444444443333

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=4.5e-11  Score=98.16  Aligned_cols=99  Identities=17%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             ccCCeeeCCCCeeCCCcEECCCCEECCCCEEC---------CCCeEe-----------ceEECCCCEECCCcEEeceEEC
Q 020813          207 SAQNNIIHPSAELGSKTTVGPHCMLGEGSQMG---------DKCSVK-----------RSVIGRHCRIGSNVKVVNSVVM  266 (321)
Q Consensus       207 ~~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~---------~~~~I~-----------~svIg~~~~Ig~~~~I~~siI~  266 (321)
                      ++++++|+|++.|..++.|+++|.|+++|.|+         +++.+.           ...++.++.+........+.|+
T Consensus        13 I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig   92 (173)
T d1v3wa_          13 IHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVG   92 (173)
T ss_dssp             ECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEEC
T ss_pred             ECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecC
Confidence            44566677777766666666666666666553         333322           1244555666666666778899


Q ss_pred             CCCEECCCcEEe-ceEECCCCEECcCcEec-CeEECCCcEE
Q 020813          267 NHVTIGDGCSIQ-GSVICSNAQLQERVALK-DCQVGQGYVV  305 (321)
Q Consensus       267 ~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~-~~iIg~~~~V  305 (321)
                      +++.||.+|.|. ++.|++++.||+++++. ++.|++++++
T Consensus        93 ~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv  133 (173)
T d1v3wa_          93 NYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLV  133 (173)
T ss_dssp             SSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEE
T ss_pred             CcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEE
Confidence            999999999998 89999999999766654 3455555544

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.5e-11  Score=102.00  Aligned_cols=49  Identities=22%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             eeeCCCC--eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEec
Q 020813          211 NIIHPSA--ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVN  262 (321)
Q Consensus       211 ~~i~p~a--~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~  262 (321)
                      .+|.++.  .+|.++.||++++|+.+|+|.+++.|   .||++|.|+++|.|..
T Consensus        59 ~~i~~p~~~~~G~ni~IG~~~~I~~~~~I~d~~~I---~IG~~~~Ig~~v~I~~  109 (182)
T d1ocxa_          59 AYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPI---RIGDNCMLAPGVHIYT  109 (182)
T ss_dssp             EEECSCEEESSSTTEEECSSEEECSSEEEECSSCE---EECTTCEECTTCEEEC
T ss_pred             eEEECCEEEEeccceeECCccEECCCcEEecCCeE---EECCCeEECcCceEee
Confidence            3455543  35677777777777777777665544   7889999998888864

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.14  E-value=5.9e-11  Score=93.56  Aligned_cols=99  Identities=16%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             eeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECC-------------------CCEECCCcEEeceEECCCCEE
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGR-------------------HCRIGSNVKVVNSVVMNHVTI  271 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~-------------------~~~Ig~~~~I~~siI~~~v~I  271 (321)
                      ++|.+++.|. ++.+ .+++||++|.|++++.|+++++..                   ++.||++|+|.+++|+++|+|
T Consensus        15 s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~I   92 (135)
T d1yp2a1          15 SVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI   92 (135)
T ss_dssp             EEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred             CEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEE
Confidence            4566666664 2333 468888899999999888866544                   478999999999999999999


Q ss_pred             CCCcEEe-ceEECCCCEECcCcEec-C-eEECCCcEEcCCcEE
Q 020813          272 GDGCSIQ-GSVICSNAQLQERVALK-D-CQVGQGYVVSAGCEY  311 (321)
Q Consensus       272 g~~~~I~-~~iI~~~~~Ig~~~~i~-~-~iIg~~~~V~~~~~i  311 (321)
                      |++|.|. ++.+.+.+.++.++.+. + ++|+++++|++|+++
T Consensus        93 G~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          93 GDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII  135 (135)
T ss_dssp             CTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred             CCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence            9999997 67777888888888886 3 678888888888753

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.10  E-value=4.7e-10  Score=96.60  Aligned_cols=67  Identities=16%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             CEECCCCEECCCCeEec-eEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe-ceEECCCCEECcCcEec
Q 020813          229 CMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-GSVICSNAQLQERVALK  295 (321)
Q Consensus       229 ~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~  295 (321)
                      ++||++|.|..++.|+. +.||+||.|+.|+.|+         .++|+++|.||.+|.|- +++|++++.|++|+.|.
T Consensus       132 A~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~  209 (274)
T d3tdta_         132 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLG  209 (274)
T ss_dssp             CEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEe
Confidence            33333333333333333 3555555555555554         23566666666666654 66666666666666654

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=4.3e-10  Score=94.08  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=25.5

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEEcC
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~~  313 (321)
                      ++|++++.||.++.|. ++.||++++|++++.+..
T Consensus       144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~k  178 (201)
T d2oi6a1         144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTR  178 (201)
T ss_dssp             EEECTTCEECTTCEEESSEEECTTCEECTTCEECS
T ss_pred             cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEee
Confidence            5778888888777654 778888888888777754

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.08  E-value=4.7e-10  Score=96.60  Aligned_cols=68  Identities=19%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             EECCCCEECCCcEEece-EECCCCEECCCcEEec---------eEECCCCEECcCcEe-cCeEECCCcEEcCCcEEcCC
Q 020813          247 VIGRHCRIGSNVKVVNS-VVMNHVTIGDGCSIQG---------SVICSNAQLQERVAL-KDCQVGQGYVVSAGCEYKGE  314 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~~s-iI~~~v~Ig~~~~I~~---------~iI~~~~~Ig~~~~i-~~~iIg~~~~V~~~~~i~~~  314 (321)
                      .||.+|.|..+++|+.| .|+++|+|+.|+.|++         ++|+++|.||+++.+ .+++||++++|++|+.+...
T Consensus       133 ~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~~~  211 (274)
T d3tdta_         133 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQS  211 (274)
T ss_dssp             EECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             EEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecCEEecCceEeccceEEecc
Confidence            44444444455555432 4666666666666653         457777777777755 46777777777777776653

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=6.5e-10  Score=93.34  Aligned_cols=67  Identities=21%  Similarity=0.316  Sum_probs=40.5

Q ss_pred             EECCCCEECCCcEEe---ceEECCCCEECCCcEEec-------------------eEECCCCEECcCcEec-CeEECCCc
Q 020813          247 VIGRHCRIGSNVKVV---NSVVMNHVTIGDGCSIQG-------------------SVICSNAQLQERVALK-DCQVGQGY  303 (321)
Q Consensus       247 vIg~~~~Ig~~~~I~---~siI~~~v~Ig~~~~I~~-------------------~iI~~~~~Ig~~~~i~-~~iIg~~~  303 (321)
                      .||++|.|+.+|+|.   ...|+++|.||+++.|..                   ++|+++|+||.+++|. ++.||+++
T Consensus        76 ~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~  155 (200)
T d1krra_          76 HIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNS  155 (200)
T ss_dssp             EECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECTTC
T ss_pred             EECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEccCcccceeeecccccccCCCc
Confidence            344444444444442   235666666666666532                   4677777777777664 67777777


Q ss_pred             EEcCCcEEcC
Q 020813          304 VVSAGCEYKG  313 (321)
Q Consensus       304 ~V~~~~~i~~  313 (321)
                      +|++|+++..
T Consensus       156 vIgagSvV~k  165 (200)
T d1krra_         156 VIGAGSIVTK  165 (200)
T ss_dssp             EECTTCEECS
T ss_pred             EEeCCCEEee
Confidence            7777777644

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.02  E-value=7.3e-11  Score=99.59  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=51.9

Q ss_pred             eeeCCCCeeCCCcEECCCCEECC-------CCEECCCCeEec-eEECCCCEECCCcEEe---ceEECCCCEEC-------
Q 020813          211 NIIHPSAELGSKTTVGPHCMLGE-------GSQMGDKCSVKR-SVIGRHCRIGSNVKVV---NSVVMNHVTIG-------  272 (321)
Q Consensus       211 ~~i~p~a~i~~~~~i~~~~~Ig~-------~~~I~~~~~I~~-svIg~~~~Ig~~~~I~---~siI~~~v~Ig-------  272 (321)
                      .++.|.+.+++++.||++++|++       .+.++..+.|.. ..||++|.|+++|+|.   ...+++++.+.       
T Consensus        18 ~~I~~~v~i~~nV~IG~~~~I~~~~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~   97 (203)
T d1mr7a_          18 QFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNG   97 (203)
T ss_dssp             EEHHHHHTTSTTEEECTTCEEECSSSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTT
T ss_pred             EEECCCeEECCCEEECCCcEEcCCcCcccCceEEeeeCEECCccEECCCeEECCCCcEeeecCcEeccCceEeeeeeccc
Confidence            34444455555555555555543       344555555543 6788888888887763   11222222111       


Q ss_pred             --------CCcEE-eceEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          273 --------DGCSI-QGSVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       273 --------~~~~I-~~~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                              ..+.+ +.++|+++|.||.++.|. ++.||++++|++++.+.
T Consensus        98 ~~~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~  147 (203)
T d1mr7a_          98 WEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVV  147 (203)
T ss_dssp             GGGGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ccCcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEe
Confidence                    11111 135556666666555443 55555555555555543

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=98.89  E-value=7e-10  Score=98.55  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=85.6

Q ss_pred             ccEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeeec-------------------------------------
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDIR-------------------------------------   69 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~~-------------------------------------   69 (321)
                      |.++..|...++..|..++++.+.. ...+.....+++.+.+.                                     
T Consensus       136 D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (307)
T d1yp2a2         136 DHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEM  215 (307)
T ss_dssp             CEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHC
T ss_pred             cceeccchhhhhhhhhhccccceEEEEecccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcc
Confidence            4566667777788888877776642 33444444555555442                                     


Q ss_pred             CCCccceEEeEeHHHHHHHHhcc-ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcc
Q 020813           70 ADLMDAHMYAFNRSVLQEVLDQK-DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  148 (321)
Q Consensus        70 s~l~d~giYi~~~~vl~~~l~~~-~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (321)
                      +.+.++|+|+|++++|..++.+. ....++..|++|.++.++                                      
T Consensus       216 ~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i~~li~~g--------------------------------------  257 (307)
T d1yp2a2         216 PFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG--------------------------------------  257 (307)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTT--------------------------------------
T ss_pred             cchhhCceEEECHHHHHHHhhhccccccchHHHHHHHHHHCC--------------------------------------
Confidence            34778999999999998777643 345678899999999976                                      


Q ss_pred             ccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccccc
Q 020813          149 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEAN  199 (321)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~  199 (321)
                                      .++.+|  +.++||.|+||+++|++||++++....
T Consensus       258 ----------------~~v~~~--~~~g~W~Digt~~~~~~a~~~ll~~~~  290 (307)
T d1yp2a2         258 ----------------MRVQAY--LYDGYWEDIGTIEAFYNANLGITKKPV  290 (307)
T ss_dssp             ----------------CCEEEE--ECCSCCEECSSHHHHHHHHHGGGCSSS
T ss_pred             ----------------CcEEEE--EeCCeEEECcCHHHHHHHHHHHhcCCC
Confidence                            256677  568999999999999999999987653

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=2.6e-09  Score=88.24  Aligned_cols=77  Identities=13%  Similarity=0.073  Sum_probs=36.8

Q ss_pred             cCCeeeCCCCeeCCCcEECC--CCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEECCCCEECCCcEEe-ceEEC
Q 020813          208 AQNNIIHPSAELGSKTTVGP--HCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSIQ-GSVIC  283 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~--~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I~-~~iI~  283 (321)
                      +.+..|+..+.|+.++.|..  .+.||++|.|+.+|.|.+ +.+++.+....++.+.     ..++||++|+|+ +|+|.
T Consensus        70 G~ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~-----~~v~Ig~~~~iG~~~~I~  144 (182)
T d1ocxa_          70 GYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELG-----KPVTIGNNVWIGGRAVIN  144 (182)
T ss_dssp             STTEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEE-----CCEEECTTCEECTTCEEC
T ss_pred             ccceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEc-----ceeEECceEeeCceeecc
Confidence            33444555555555555522  235555555555555544 3344444444444443     344444444444 44444


Q ss_pred             CCCEEC
Q 020813          284 SNAQLQ  289 (321)
Q Consensus       284 ~~~~Ig  289 (321)
                      ++++||
T Consensus       145 ~Gv~IG  150 (182)
T d1ocxa_         145 PGVTIG  150 (182)
T ss_dssp             TTCEEC
T ss_pred             CcEEEC
Confidence            444444

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=4.5e-09  Score=87.68  Aligned_cols=29  Identities=10%  Similarity=0.039  Sum_probs=14.9

Q ss_pred             EECCCCEECCCcEEeceEECCCCEECcCc
Q 020813          264 VVMNHVTIGDGCSIQGSVICSNAQLQERV  292 (321)
Q Consensus       264 iI~~~v~Ig~~~~I~~~iI~~~~~Ig~~~  292 (321)
                      .+++++.+++.+.+.++.+++++.+++++
T Consensus       103 ~ig~~~~i~~~~~~~~~~~~~~~~i~~~~  131 (201)
T d2oi6a1         103 RLGKGSKAGHLTYLGDAEIGDNVNIGAGT  131 (201)
T ss_dssp             EECTTCEEEEEEEEEEEEECTTCEECTTC
T ss_pred             eeCCCeEEceeeeecccCcCccccccCce
Confidence            34445545444444455555555555544

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.86  E-value=1.9e-09  Score=90.64  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=12.5

Q ss_pred             CCCCEECCCcEEe-ceEECCCCEEC
Q 020813          266 MNHVTIGDGCSIQ-GSVICSNAQLQ  289 (321)
Q Consensus       266 ~~~v~Ig~~~~I~-~~iI~~~~~Ig  289 (321)
                      ...|.||++|+|+ +|+|.++++||
T Consensus       111 ~g~v~IGd~v~IG~~~~I~~gv~IG  135 (203)
T d1mr7a_         111 KGDTIIGNDVWIGKDVVIMPGVKIG  135 (203)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEEC
T ss_pred             ccCeEECCEEEECCceeEEeEEEEc
Confidence            3445555555555 45555555555

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.75  E-value=7.7e-08  Score=86.14  Aligned_cols=58  Identities=24%  Similarity=0.421  Sum_probs=45.7

Q ss_pred             cCCeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEE
Q 020813          208 AQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVV  265 (321)
Q Consensus       208 ~~~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI  265 (321)
                      .+++.++++|.|+++++|++++.|++++.|++++.|.++.|..++.|+++++|.++.+
T Consensus        61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~  118 (320)
T d2f9ca1          61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSV  118 (320)
T ss_dssp             STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEE
T ss_pred             CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccE
Confidence            3467788888888888888888888888888888887777777777777777764443

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.75  E-value=4.7e-08  Score=84.01  Aligned_cols=79  Identities=23%  Similarity=0.309  Sum_probs=44.0

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEe---------ceEECCCCEECCCcEEe-c
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVV---------NSVVMNHVTIGDGCSIQ-G  279 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~---------~siI~~~v~Ig~~~~I~-~  279 (321)
                      +..|+|.+.|++++.+..    +.+++|++.+     .||++|.|..++++.         ..+|+++|.||.|+.|- +
T Consensus       137 g~~I~~~~~Ig~g~~i~h----~~givig~~~-----~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~  207 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFDH----ATGIVVGETS-----VIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGN  207 (241)
T ss_dssp             SCEECTTCEECSSCEESS----CTTCEECTTC-----EECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESS
T ss_pred             eeccccCCEEccCcccCc----cceEEEeccc-----eecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCC
Confidence            345555555555555532    1133333333     344444444444443         35677777777777664 7


Q ss_pred             eEECCCCEECcCcEecCe
Q 020813          280 SVICSNAQLQERVALKDC  297 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~~~  297 (321)
                      ..||+++.||+|+++...
T Consensus       208 v~IG~~a~IgAgsvV~kd  225 (241)
T d1ssqa_         208 IEVGKYAKIGANSVVLNP  225 (241)
T ss_dssp             CEECTTCEECTTCEECSC
T ss_pred             cEECCCCEECCCCEECCC
Confidence            777777777777766543

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.70  E-value=1.4e-08  Score=85.50  Aligned_cols=33  Identities=12%  Similarity=0.265  Sum_probs=17.7

Q ss_pred             eEECCCCEECcCcEec-CeEECCCcEEcCCcEEc
Q 020813          280 SVICSNAQLQERVALK-DCQVGQGYVVSAGCEYK  312 (321)
Q Consensus       280 ~iI~~~~~Ig~~~~i~-~~iIg~~~~V~~~~~i~  312 (321)
                      ++|+++|.||.++.|. ++.||++++|++++.+.
T Consensus       109 v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVt  142 (208)
T d1xata_         109 TLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVT  142 (208)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEcCCeEECccccccCCeEeCCCCEEeCceEEe
Confidence            4555555555555443 45555555555555553

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=4.7e-08  Score=84.01  Aligned_cols=88  Identities=15%  Similarity=0.250  Sum_probs=54.3

Q ss_pred             eeCCCcEECCCCEECCCCEECCCCeEeceEECCCCEECCCcEEeceEECCCCEECCCcEE---eceEECCCCEECcCcEe
Q 020813          218 ELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGSNVKVVNSVVMNHVTIGDGCSI---QGSVICSNAQLQERVAL  294 (321)
Q Consensus       218 ~i~~~~~i~~~~~Ig~~~~I~~~~~I~~svIg~~~~Ig~~~~I~~siI~~~v~Ig~~~~I---~~~iI~~~~~Ig~~~~i  294 (321)
                      .+.-++.|++++.||+++.|..++   ..+||+++.||+++.|     ..+++++.....   +..+|+++|.||+|++|
T Consensus       133 ~~~~g~~I~~~~~Ig~g~~i~h~~---givig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~I  204 (241)
T d1ssqa_         133 SVAFDVDIHPAAKIGHGIMFDHAT---GIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKI  204 (241)
T ss_dssp             HHHHSCEECTTCEECSSCEESSCT---TCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEE
T ss_pred             hhheeeccccCCEEccCcccCccc---eEEEeccceecCCeee-----cccccccccccCCCCCCCccCCCeEECCCCEE
Confidence            344566777777777777776543   2478888888887754     444444433222   13567777777777744


Q ss_pred             -cCeEECCCcEEcCCcEEcC
Q 020813          295 -KDCQVGQGYVVSAGCEYKG  313 (321)
Q Consensus       295 -~~~iIg~~~~V~~~~~i~~  313 (321)
                       .+..||++++|++|+++..
T Consensus       205 lg~v~IG~~a~IgAgsvV~k  224 (241)
T d1ssqa_         205 LGNIEVGKYAKIGANSVVLN  224 (241)
T ss_dssp             ESSCEECTTCEECTTCEECS
T ss_pred             cCCcEECCCCEECCCCEECC
Confidence             4566666666666666554

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.54  E-value=7.1e-08  Score=81.08  Aligned_cols=33  Identities=15%  Similarity=0.258  Sum_probs=16.5

Q ss_pred             CCEECCCcEEe-ceEECCCCEECcCcEecCeEECCCcEE
Q 020813          268 HVTIGDGCSIQ-GSVICSNAQLQERVALKDCQVGQGYVV  305 (321)
Q Consensus       268 ~v~Ig~~~~I~-~~iI~~~~~Ig~~~~i~~~iIg~~~~V  305 (321)
                      +++||++|+|+ +|+|.++++||     ++|+||++++|
T Consensus       108 ~v~Igd~v~IG~~s~I~~gv~IG-----~~~vIgagSvV  141 (208)
T d1xata_         108 DTLIGHEVWIGTEAMFMPGVRVG-----HGAIIGSRALV  141 (208)
T ss_dssp             CEEECTTCEECTTCEECTTCEEC-----TTCEECTTCEE
T ss_pred             CEEEcCCeEECccccccCCeEeC-----CCCEEeCceEE
Confidence            34555555554 55555555555     34444444444

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.48  E-value=7.1e-07  Score=79.65  Aligned_cols=55  Identities=13%  Similarity=0.181  Sum_probs=25.3

Q ss_pred             CeeeCCCCeeCCCcEECCCCEECCCCEECCCCeEec-eEECCCCEECCCcEEeceEE
Q 020813          210 NNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKR-SVIGRHCRIGSNVKVVNSVV  265 (321)
Q Consensus       210 ~~~i~p~a~i~~~~~i~~~~~Ig~~~~I~~~~~I~~-svIg~~~~Ig~~~~I~~siI  265 (321)
                      ++.|...|+|++.+.|++++.|++++.|+ ++.|.. +.|+++|.|++++.+.++.+
T Consensus        69 ~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i  124 (320)
T d2f9ca1          69 GTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAI  124 (320)
T ss_dssp             SCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEE
T ss_pred             CCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEE
Confidence            44444444454444444444444444443 233332 45555555544444443333

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.40  E-value=5.5e-08  Score=85.95  Aligned_cols=109  Identities=8%  Similarity=0.059  Sum_probs=79.2

Q ss_pred             ccEEEecCCccEEEeecccccccc-ceeecHHHHhhcCeeeec----------------CCCccceEEeEeHHHHHHHHh
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEK-DTRIRKSILRAVGQMDIR----------------ADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~-~l~i~~~~~~~~~~~~~~----------------s~l~d~giYi~~~~vl~~~l~   90 (321)
                      |.++++|+..++..|....++.+. ..++.  ..++||.+++.                |||+.+|+|+|++++++ ++.
T Consensus       110 D~~~~~dl~~ll~~h~~~~~~~~i~~~~V~--~p~~yGV~~~d~~~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~-~~~  186 (292)
T d1fxoa_         110 NLYYGHDFHELLGSASQRQTGASVFAYHVL--DPERYGVVEFDQGGKAISLEEKPLEPKSNYAVTGLYFYDQQVVD-IAR  186 (292)
T ss_dssp             EEEECTTHHHHHHHHHTCCSSEEEEEEECS--CGGGSEEEEECTTSCEEEEEESCSSCSSSEEEEEEEEECTTHHH-HHH
T ss_pred             ccccCcCHHHHHHHHHhCCCCcEEEEEECC--CHHHCeEEEEcCCCCEeEEEECCCCCCCCcEEEEEEEEChHHHH-HHH
Confidence            567888999999999988887765 23332  23578887663                78999999999999996 544


Q ss_pred             c---cccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCccee
Q 020813           91 Q---KDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  167 (321)
Q Consensus        91 ~---~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  167 (321)
                      .   ....+..-.|+++.+++++                                                       ++
T Consensus       187 ~l~~s~rgE~eitD~~~~~l~~~-------------------------------------------------------~~  211 (292)
T d1fxoa_         187 DLKPSPRGELEITDVNRAYLERG-------------------------------------------------------QL  211 (292)
T ss_dssp             HCCCCTTSSCCHHHHHHHHHHTT-------------------------------------------------------CE
T ss_pred             hCCCCCCCchhhHHHHHHHHHcC-------------------------------------------------------Ce
Confidence            2   1223455668888888765                                                       22


Q ss_pred             EEEEecCccceeeccCHHHHHHHchhh
Q 020813          168 CVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       168 ~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                      .++......+|.|+||+++|++++..+
T Consensus       212 ~~~~~~~~~~W~D~Gt~~~l~~a~~~v  238 (292)
T d1fxoa_         212 SVEIMGRGYAWLDTGTHDSLLEAGQFI  238 (292)
T ss_dssp             EEEECCTTSEEEECCSHHHHHHHHHHH
T ss_pred             EEEEeCCCCEEEeCCCHHHHHHHHHHH
Confidence            333335556799999999999999765

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.2e-06  Score=76.95  Aligned_cols=109  Identities=7%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             ccEEEecCCccEEEeeccccccccc-eeecHHHHhhcCeeee----------------cCCCccceEEeEeHHHHHHHHh
Q 020813           28 YNIIGMDPTKQFLLHIATGAELEKD-TRIRKSILRAVGQMDI----------------RADLMDAHMYAFNRSVLQEVLD   90 (321)
Q Consensus        28 ~~l~~lD~~~~~~~h~~~~a~~t~~-l~i~~~~~~~~~~~~~----------------~s~l~d~giYi~~~~vl~~~l~   90 (321)
                      |.+++.|+..++..|....++.|.. .++  +...+||.+++                .||++++|+|+|++++++ +++
T Consensus       110 di~~~~~~~~~l~~~~~~~~~atI~~~~V--~dP~~yGVve~d~~g~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~-~~~  186 (291)
T d1mc3a_         110 NIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLYFYDSKVVE-YAK  186 (291)
T ss_dssp             EEEECSSCHHHHHHHTTCCSSEEEEEEEC--SCCSSSBBCEEETTEEEEECCBSCSSCSCSEEEEEEEECCTHHHH-HHH
T ss_pred             CcccCcCHHHHHHHHHhCcCCcEEEEEEC--CCcccCCCceeccCcceeEEEECCCCCCCCeEEEEEEEeChHHHH-HHh
Confidence            4567778888888888877776642 222  22346666655                488999999999999996 544


Q ss_pred             cc---ccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCccccccCCCCCCCCCCCccee
Q 020813           91 QK---DKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFHELYALGPNGSAPVRRTHKC  167 (321)
Q Consensus        91 ~~---~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  167 (321)
                      +-   ...+.--.|++..+++++                                                       ..
T Consensus       187 ~lk~s~rgE~EItdl~~~~l~~~-------------------------------------------------------~~  211 (291)
T d1mc3a_         187 QVKPSERGELEITSINQMYLEAG-------------------------------------------------------NL  211 (291)
T ss_dssp             SCCCCSSSSCCHHHHHHHHHHTT-------------------------------------------------------CE
T ss_pred             cCCCCCCCceeehHHHHHHHHcC-------------------------------------------------------Cc
Confidence            21   111112246777766653                                                       12


Q ss_pred             EEEEecCccceeeccCHHHHHHHchhh
Q 020813          168 CVYIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       168 ~~~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                      ..+......+|.|+||+++|++|+..+
T Consensus       212 ~~~~~~~g~~W~D~Gt~~~l~~a~~~v  238 (291)
T d1mc3a_         212 TVELLGRGFAWLDTGTHDSLIEASTFV  238 (291)
T ss_dssp             EEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred             eEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence            233335556799999999999999755

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.27  E-value=0.00012  Score=61.47  Aligned_cols=71  Identities=10%  Similarity=0.239  Sum_probs=55.5

Q ss_pred             cCCCccceEEeEeHHHHHHHHhccccCCCCccchhHHHHHhhcccccccCCCCCCccccccCCCcchhhhhhcCCCCCcc
Q 020813           69 RADLMDAHMYAFNRSVLQEVLDQKDKFQSLKQDVLPYLVRSQLKSEILINGAPQGQQAKENGNDKVSYRILANASTPSFH  148 (321)
Q Consensus        69 ~s~l~d~giYi~~~~vl~~~l~~~~~~~si~~dlip~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (321)
                      .+.+.++|+|++++.+++ ++.  ....++.+++++.|++++                                      
T Consensus       183 ~~~~~~~G~y~~~~~~~~-~i~--~~~~~~~~~~l~~l~~~~--------------------------------------  221 (259)
T d1tzfa_         183 DGAMINGGFFVLNPSVID-LID--NDATTWEQEPLMTLAQQG--------------------------------------  221 (259)
T ss_dssp             CSCCEECCCEEECGGGGG-GCC--STTCCTTTHHHHHHHHTT--------------------------------------
T ss_pred             ceeeecceeccccchhhh-hcc--cCcCccHHHHHHHHHhcC--------------------------------------
Confidence            577899999999999885 444  335567789999998864                                      


Q ss_pred             ccccCCCCCCCCCCCcceeEEEEecCccceeeccCHHHHHHHchhhccccc
Q 020813          149 ELYALGPNGSAPVRRTHKCCVYIASNSKYCVRLNSIQAFMDINRDVIGEAN  199 (321)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~w~~i~t~~~y~~~~~~~l~~~~  199 (321)
                                       ++.+|  ..++||.+++|+++|..++..+....+
T Consensus       222 -----------------~v~~~--~~~g~W~didt~~d~~~~~~~~~~~~~  253 (259)
T d1tzfa_         222 -----------------ELMAF--EHPGFWQPMDTLRDKVYLEGLWEKGKA  253 (259)
T ss_dssp             -----------------CEEEE--EECSCEEECCSHHHHHHHHHHHHTTCC
T ss_pred             -----------------CeEEE--EeCCEEEECCCHHHHHHHHHHHHcCCC
Confidence                             34566  457899999999999999888766543

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.99  E-value=0.0018  Score=56.14  Aligned_cols=25  Identities=0%  Similarity=0.045  Sum_probs=20.6

Q ss_pred             EEecCccceeeccCHHHHHHHchhh
Q 020813          170 YIASNSKYCVRLNSIQAFMDINRDV  194 (321)
Q Consensus       170 ~i~~~~~~w~~i~t~~~y~~~~~~~  194 (321)
                      +....+.+|.|+|++++|.+++..+
T Consensus       216 ~~~~~~~~w~Digt~~~l~~~s~~i  240 (295)
T d1lvwa_         216 ELMGRGMAWLDTGTHDGLLEASSFI  240 (295)
T ss_dssp             EEECTTCEECCCSSHHHHHHHHHHH
T ss_pred             EEcCCCcEEeCCCChHHHHHHHHHH
Confidence            3346788999999999999998765

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.0037  Score=53.30  Aligned_cols=24  Identities=8%  Similarity=-0.064  Sum_probs=19.4

Q ss_pred             eeEEEEecCccceeeccCHHHHHHHc
Q 020813          166 KCCVYIASNSKYCVRLNSIQAFMDIN  191 (321)
Q Consensus       166 ~v~~~i~~~~~~w~~i~t~~~y~~~~  191 (321)
                      ++.++  +.+++|.|+||.++++++.
T Consensus       243 ~v~~v--~~d~~W~DvGtw~s~~~~~  266 (268)
T d2cu2a2         243 RVRVV--LGRFPWDDVGNWRALERVF  266 (268)
T ss_dssp             SEEEE--EECSCEECCCSTTHHHHHH
T ss_pred             CceEE--ecCCCcCCCcCHHHHHHHh
Confidence            44555  6689999999999999864

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.63  E-value=0.41  Score=38.30  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=28.9

Q ss_pred             cCCCccceEEeEeHHHHHHHHhc----cccCCCCccchhHHHHHhh
Q 020813           69 RADLMDAHMYAFNRSVLQEVLDQ----KDKFQSLKQDVLPYLVRSQ  110 (321)
Q Consensus        69 ~s~l~d~giYi~~~~vl~~~l~~----~~~~~si~~dlip~l~~~~  110 (321)
                      .+++.++|+|+|+...|..++..    +.....+-.++++.+.+++
T Consensus       163 ~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g  208 (250)
T d1g97a2         163 QIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETG  208 (250)
T ss_dssp             TCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTT
T ss_pred             ccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCC
Confidence            36788999999999988776653    1223334557777777765