Citrus Sinensis ID: 020824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCTKD
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccEEEEEEcEEcccEEEEEEEEcccccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEccccHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHccccHHHHHHHHHccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEcccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEEcccccEEEEEEEcccccccccccccccccccccccEEEEEEEEEHHHHcccccccEEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEEcHHHHHHccccHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
manawkrdtkhpkltpkILLSLLFPCLLLFFIFYFnshsynpnpnpylsvtssfhspsfpafnclkcpqshpiianvvenvkypfiyslsdlgnlpdkphkNIVRLlkgkpfrkpdiSVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLvgrldnsavsatgAKLAFKSNEEIALQVrsipldevipeaePVLLLKIDVQGWEYHVLKGATKLLsrkkgespyliyeeDEHLLQASNSSAKEIREFLHSVGyhhcnqhgtdahctkd
Flexible Loop (DISEMBL)
manawkrdtkhpkltpKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSdlgnlpdkpHKNIVrllkgkpfrkpdISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCnqhgtdahctkd
Low Complexity Region (SEG)
MANAWKRDTKHPKLTPKIllsllfpclllffifyfNSHSYnpnpnpYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCTKD
Disordered region (IsUnstruct)
*************LTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHL**********IREFLHSVGYHHCNQ**********
Disordered Region (DISOPRED)
***************PKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLD*******************ALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDA*****
Disordered Region (DISEMBL)
MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQH*********
Disordered Region (DISPRO)
********TKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCN***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFPAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCTKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
225445491	320	PREDICTED: uncharacterized protein LOC10	0.990	0.993	0.765	1e-138
449443085	322	PREDICTED: uncharacterized protein LOC10	0.996	0.993	0.734	1e-135
297825867	319	hypothetical protein ARALYDRAFT_481533 [	0.990	0.996	0.726	1e-133
21593723	319	unknown [Arabidopsis thaliana]	0.990	0.996	0.717	1e-132
224063457	317	predicted protein [Populus trichocarpa]	0.981	0.993	0.769	1e-131
255567015	325	conserved hypothetical protein [Ricinus	0.993	0.981	0.733	1e-131
18401209	319	uncharacterized protein [Arabidopsis tha	0.990	0.996	0.714	1e-131
357478025	322	hypothetical protein MTR_4g114160 [Medic	0.993	0.990	0.732	1e-130
217072612	322	unknown [Medicago truncatula]	0.993	0.990	0.728	1e-129
356548583	322	PREDICTED: uncharacterized protein LOC10	0.987	0.984	0.712	1e-128

>gi|225445491|ref|XP_002285177.1| PREDICTED: uncharacterized protein LOC100259301 [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/320 (76%), Positives = 271/320 (84%), Gaps = 2/320 (0%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFP 60
           MANAWKRD   P       + LL     L  + +    S  P+P P  +  +   S +  
Sbjct: 1   MANAWKRD--RPPRLLSPRILLLLFSSSLLLLIFLFLSSRTPSPIPVSAFKTLIPSRTIQ 58

Query: 61  AFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVT 120
            F+C KCPQSHP+IAN+VE VKYPF+YSLSD G LPDKPHKNIVR+LKGKPFRKPDIS+T
Sbjct: 59  PFDCFKCPQSHPVIANIVEGVKYPFLYSLSDFGTLPDKPHKNIVRILKGKPFRKPDISLT 118

Query: 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180
           +QEILEKMK +GKNG VVDVGANVGMA+FAAAVMGFRVL+FEPVFENLQRICDG++FNRV
Sbjct: 119 VQEILEKMKDQGKNGFVVDVGANVGMATFAAAVMGFRVLAFEPVFENLQRICDGIFFNRV 178

Query: 181 GDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVI 240
           G+ VTV+EAA SDR+GNITFHKLVGRLDNSAVSATGAK+AFKSNEEI LQVRSIPLDEVI
Sbjct: 179 GESVTVFEAAASDRLGNITFHKLVGRLDNSAVSATGAKMAFKSNEEIELQVRSIPLDEVI 238

Query: 241 PEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREF 300
           PE+EPVLLLKIDVQGWEYHVLKGATKLLSRK+ E+PYLIYEEDE LLQASNSSAKEIREF
Sbjct: 239 PESEPVLLLKIDVQGWEYHVLKGATKLLSRKESEAPYLIYEEDERLLQASNSSAKEIREF 298

Query: 301 LHSVGYHHCNQHGTDAHCTK 320
           LHSVGYHHC QHGTDAHCTK
Sbjct: 299 LHSVGYHHCTQHGTDAHCTK 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443085|ref|XP_004139311.1| PREDICTED: uncharacterized protein LOC101221290 [Cucumis sativus] gi|449493626|ref|XP_004159382.1| PREDICTED: uncharacterized LOC101221290 [Cucumis sativus]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/320 (73%), Positives = 270/320 (84%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFP 60
           MANAWK+D  H  L+P  L  L    +L+ F F FN+ S +    P  ++   F   S  
Sbjct: 1   MANAWKKDKPHKLLSPVPLFFLFSFSILIIFFFLFNNSSSSHQSTPSFTIKPHFPFRSIS 60

Query: 61  AFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVT 120
            F+C KCPQS+P+IANVVE V+YPF++S++DLGNLPDKPHKNIVR+LKGKPFRKPDISVT
Sbjct: 61  PFDCFKCPQSYPVIANVVEGVRYPFLFSIADLGNLPDKPHKNIVRMLKGKPFRKPDISVT 120

Query: 121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV 180
           IQE+LEKMK +  NG VVDVGANVGMASFAAA MGFRVL+FEPVFENLQRICDG++ NRV
Sbjct: 121 IQEVLEKMKGDSGNGFVVDVGANVGMASFAAAAMGFRVLAFEPVFENLQRICDGIYLNRV 180

Query: 181 GDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVI 240
           G+LV V+EAA SDR+GNIT HKLVGRLDNSAVSATGAKLAFKSNEEIA+QV+SIPLDEVI
Sbjct: 181 GELVNVFEAAASDRLGNITVHKLVGRLDNSAVSATGAKLAFKSNEEIAVQVKSIPLDEVI 240

Query: 241 PEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREF 300
           P++E VLL+KIDVQGWEYHVLKGA  +LSRK  E+PYLIYEEDE LL+ASNSS++EIREF
Sbjct: 241 PDSERVLLIKIDVQGWEYHVLKGAKGILSRKGTEAPYLIYEEDEKLLKASNSSSREIREF 300

Query: 301 LHSVGYHHCNQHGTDAHCTK 320
           LHSVGYHHC QHGTDAHCTK
Sbjct: 301 LHSVGYHHCTQHGTDAHCTK 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825867|ref|XP_002880816.1| hypothetical protein ARALYDRAFT_481533 [Arabidopsis lyrata subsp. lyrata] gi|297326655|gb|EFH57075.1| hypothetical protein ARALYDRAFT_481533 [Arabidopsis lyrata subsp. lyrata]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/322 (72%), Positives = 272/322 (84%), Gaps = 4/322 (1%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPN-PNPYLSVTSSFHSPSF 59
           MANAW+RD     L+PK L+SLL   ++     +F   + +    NP LS+ S F     
Sbjct: 1   MANAWRRDKNQKLLSPKTLISLLVLSIIFLSSLFFFFSNSSLQYSNPNLSIDSPF---PI 57

Query: 60  PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
           P F+C KCPQS PIIANVVEN+KYPF+YSL+DLGNLP+KPHKNIVRLLKGKPFRKPDIS 
Sbjct: 58  PPFDCFKCPQSKPIIANVVENLKYPFVYSLADLGNLPEKPHKNIVRLLKGKPFRKPDISA 117

Query: 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
           TIQE+LE M+  GKNG+VVDVGANVGMASFAAAVMGF+VL+FEPVFENLQRICDG+WFNR
Sbjct: 118 TIQEVLENMRASGKNGIVVDVGANVGMASFAAAVMGFKVLAFEPVFENLQRICDGIWFNR 177

Query: 180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
           V  LVTV++AAVSDR G+ITFHKLVGRLDNSAVS  GA+LAFKSN+EIA+QV+SIPLD++
Sbjct: 178 VAALVTVFQAAVSDRTGDITFHKLVGRLDNSAVSEVGARLAFKSNKEIAVQVKSIPLDKL 237

Query: 240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
           IP ++PVLL+KIDVQGWEYHVLKGA KLLSRK  E+PYLIYEEDE LL+ASNSS+KEIR+
Sbjct: 238 IPPSQPVLLIKIDVQGWEYHVLKGAKKLLSRKPAEAPYLIYEEDERLLKASNSSSKEIRD 297

Query: 300 FLHSVGYHHCNQHGTDAHCTKD 321
           FL SVGY  C+QHGTDAHCTK+
Sbjct: 298 FLKSVGYSKCSQHGTDAHCTKE 319

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593723|gb|AAM65690.1| unknown [Arabidopsis thaliana]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/322 (71%), Positives = 270/322 (83%), Gaps = 4/322 (1%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPN-PNPYLSVTSSFHSPSF 59
           MA+AWK+D     L+PK L+SLL   ++     +F   + +    NP LS+ S +     
Sbjct: 1   MASAWKKDKNQKLLSPKTLISLLVLSIIFLSSLFFFFSNSSLQYSNPNLSINSPY---PI 57

Query: 60  PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
           P F+C KCPQS PIIANVVEN+KYPF+YSL+DLGNLP+KPHKNIVRLLKGKPFRKPDIS 
Sbjct: 58  PPFDCFKCPQSKPIIANVVENLKYPFVYSLADLGNLPEKPHKNIVRLLKGKPFRKPDISA 117

Query: 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
           TIQE+L+ M+  GKNG+VVDVGANVGMASFAAAVMGF+VL+FEPVFENLQRICDG+WFNR
Sbjct: 118 TIQEVLDSMRASGKNGIVVDVGANVGMASFAAAVMGFKVLAFEPVFENLQRICDGIWFNR 177

Query: 180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
           V  LVTV+EAA SDR G+ITFHKLVGRLDNSAVS  GA+LAFKSN+EIA+QV+SIPLD++
Sbjct: 178 VSSLVTVFEAAASDRTGDITFHKLVGRLDNSAVSEVGARLAFKSNKEIAVQVKSIPLDKL 237

Query: 240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
           IP ++PVLL+KIDVQGWEYHVLKGA KLLSRK  E+PYLIYEEDE LL ASNSS+KEIR+
Sbjct: 238 IPPSQPVLLIKIDVQGWEYHVLKGAKKLLSRKPAEAPYLIYEEDERLLTASNSSSKEIRD 297

Query: 300 FLHSVGYHHCNQHGTDAHCTKD 321
           FL SVGY  C+QHGTDAHCTK+
Sbjct: 298 FLKSVGYSKCSQHGTDAHCTKE 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063457|ref|XP_002301154.1| predicted protein [Populus trichocarpa] gi|118485110|gb|ABK94418.1| unknown [Populus trichocarpa] gi|222842880|gb|EEE80427.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/321 (76%), Positives = 277/321 (86%), Gaps = 6/321 (1%)

Query: 1   MANAWKRDT-KHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSF 59
           MANAWKR+  K PKL   ILL L    LLL F+F+F++ S +  PN  L VT  +     
Sbjct: 1   MANAWKRENNKQPKLLSPILLILSLSLLLLLFLFFFSARSPSNPPNSTLFVTQVY---PI 57

Query: 60  PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
           P+FNCL+ PQ+HP+IAN+VEN+KYPF+YSLSD G+LPDKPHKNIVRLLKGKPFRKPDIS 
Sbjct: 58  PSFNCLESPQAHPVIANIVENLKYPFLYSLSDFGSLPDKPHKNIVRLLKGKPFRKPDISA 117

Query: 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
           TIQ++LE MK  G+NGLVVDVGANVGMASFAAAVMGF+VL+FEPV +NL+RICDG+WFNR
Sbjct: 118 TIQQLLEGMK--GRNGLVVDVGANVGMASFAAAVMGFKVLAFEPVIDNLKRICDGIWFNR 175

Query: 180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
           V DLVTV+EAAVSDRIGNITF+KLVGRLDNSAVSA GAKLAFKSNEEIA QVR+IPLDE+
Sbjct: 176 VADLVTVFEAAVSDRIGNITFYKLVGRLDNSAVSANGAKLAFKSNEEIAFQVRTIPLDEL 235

Query: 240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
           IP +EPVLLLKIDVQGWEYHVLKGA KLLSRKK  +PYLIYEEDE LLQASNSSAKEIR+
Sbjct: 236 IPNSEPVLLLKIDVQGWEYHVLKGAVKLLSRKKDAAPYLIYEEDERLLQASNSSAKEIRD 295

Query: 300 FLHSVGYHHCNQHGTDAHCTK 320
           FLH VGY HC QHGTDAHCTK
Sbjct: 296 FLHGVGYSHCVQHGTDAHCTK 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567015|ref|XP_002524490.1| conserved hypothetical protein [Ricinus communis] gi|223536278|gb|EEF37930.1| conserved hypothetical protein [Ricinus communis]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/327 (73%), Positives = 278/327 (85%), Gaps = 8/327 (2%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYN-PNPNPYLSV---TSSFHS 56
           MANAWKR+ KHPKL     L LL    L   + +F   S++  NPN  LS+    S   S
Sbjct: 1   MANAWKRENKHPKLFSLNPLLLLLLISLSLLLLFFLFSSHSRSNPNLSLSIPKPISQKQS 60

Query: 57  PSFP--AFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRK 114
            ++P   F+C K PQ+HP++AN+VEN+K+PF++SLSD G+LPDKPHKNIVRLLKGK FRK
Sbjct: 61  SNYPIAPFDCSKSPQAHPVVANIVENIKFPFLFSLSDFGSLPDKPHKNIVRLLKGKAFRK 120

Query: 115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG 174
           PDIS TIQ++LE   K G+NG VVDVGANVGMASFAAAVMGF+VL+FEPVFENLQRICDG
Sbjct: 121 PDISATIQQLLEG--KRGENGFVVDVGANVGMASFAAAVMGFKVLAFEPVFENLQRICDG 178

Query: 175 VWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSI 234
           +WFNRV DLVTV+EAAVSD+IGNITF+KLVGRLDNSAVSATGAKLAFKSNEE+A+QVR+I
Sbjct: 179 IWFNRVRDLVTVFEAAVSDKIGNITFYKLVGRLDNSAVSATGAKLAFKSNEEVAVQVRTI 238

Query: 235 PLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSA 294
           PLD++IP++EPVLLLKIDVQGWEYHVLKGA+KLLSRKKGE+PYLIYEEDE LLQASNSSA
Sbjct: 239 PLDDLIPDSEPVLLLKIDVQGWEYHVLKGASKLLSRKKGEAPYLIYEEDERLLQASNSSA 298

Query: 295 KEIREFLHSVGYHHCNQHGTDAHCTKD 321
           KEIR+FL +VGY HC  HGTDAHCTKD
Sbjct: 299 KEIRDFLQNVGYRHCTMHGTDAHCTKD 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401209|ref|NP_565628.1| uncharacterized protein [Arabidopsis thaliana] gi|2760835|gb|AAB95303.1| expressed protein [Arabidopsis thaliana] gi|330252780|gb|AEC07874.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/322 (71%), Positives = 269/322 (83%), Gaps = 4/322 (1%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPN-PNPYLSVTSSFHSPSF 59
           MA+AWK+D     L+PK L+SLL   ++     +F   + +    NP LS+ S +     
Sbjct: 1   MASAWKKDKNQKLLSPKTLISLLVLSIIFLSSLFFFFSNSSLQYSNPNLSINSPY---PI 57

Query: 60  PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
           P F+C KCPQS PIIANVVEN+KYPF+YSL+DLGNLP+KPHKNIVRLLKGKPFRKPDIS 
Sbjct: 58  PPFDCFKCPQSKPIIANVVENLKYPFVYSLADLGNLPEKPHKNIVRLLKGKPFRKPDISA 117

Query: 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
           TIQE+L+ M+  GKNG+VVDVGANVGMASFAAAVMGF+VL+FEPVFENLQRICDG+WFNR
Sbjct: 118 TIQEVLDSMRASGKNGIVVDVGANVGMASFAAAVMGFKVLAFEPVFENLQRICDGIWFNR 177

Query: 180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
           V  LVTV+EAA SDR G+ITFHKLVGRLDNSAVS  GA+LAFKSN+EIA+QV+SIPLD++
Sbjct: 178 VASLVTVFEAAASDRTGDITFHKLVGRLDNSAVSEVGARLAFKSNKEIAVQVKSIPLDKL 237

Query: 240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
           IP ++PVLL+KIDVQGWEYHVLKGA KLLS K  E+PYLIYEEDE LL ASNSS+KEIR+
Sbjct: 238 IPPSQPVLLIKIDVQGWEYHVLKGAKKLLSGKPAEAPYLIYEEDERLLTASNSSSKEIRD 297

Query: 300 FLHSVGYHHCNQHGTDAHCTKD 321
           FL SVGY  C+QHGTDAHCTK+
Sbjct: 298 FLKSVGYSKCSQHGTDAHCTKE 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478025|ref|XP_003609298.1| hypothetical protein MTR_4g114160 [Medicago truncatula] gi|357478067|ref|XP_003609319.1| hypothetical protein MTR_4g114400 [Medicago truncatula] gi|355510353|gb|AES91495.1| hypothetical protein MTR_4g114160 [Medicago truncatula] gi|355510374|gb|AES91516.1| hypothetical protein MTR_4g114400 [Medicago truncatula]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/321 (73%), Positives = 270/321 (84%), Gaps = 2/321 (0%)

Query: 1   MANAWKRDT-KHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSF 59
           MANAWKRD          + L   F  L LF  F F +   NPNPN +L++ ++F S S 
Sbjct: 1   MANAWKRDKPSRLLSPKLLFLLFSFTLLFLFLYFIFLTPPSNPNPN-FLTLNTNFFSNSI 59

Query: 60  PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
             F+C+K PQSHP++A+VVE V+YPF++SLSD GNLPDKPHKNIVRLLKGK FRKPDISV
Sbjct: 60  TPFDCIKSPQSHPVVASVVEGVRYPFLFSLSDFGNLPDKPHKNIVRLLKGKAFRKPDISV 119

Query: 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
           T+QE+LEK K +G +GLVVDVGANVGMASFAAAVMGFRVL+FEPV ENLQ++C+GV+FNR
Sbjct: 120 TVQEVLEKAKSKGMDGLVVDVGANVGMASFAAAVMGFRVLAFEPVLENLQKLCEGVYFNR 179

Query: 180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
           V DLVT++EAA SDR+GNIT HKLVGRLDNSAVSATGAKLAFKSNEEIA QVR++PLDEV
Sbjct: 180 VADLVTLFEAAASDRLGNITVHKLVGRLDNSAVSATGAKLAFKSNEEIAFQVRTVPLDEV 239

Query: 240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
           IP +E VLLLKIDVQGWEYHVLKGA+KLLSRK  ++PYLIYEEDE LLQASNSSAKEIR+
Sbjct: 240 IPASERVLLLKIDVQGWEYHVLKGASKLLSRKGSQAPYLIYEEDERLLQASNSSAKEIRD 299

Query: 300 FLHSVGYHHCNQHGTDAHCTK 320
           FL +VGYH C QHGTDAHCTK
Sbjct: 300 FLRTVGYHDCTQHGTDAHCTK 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072612|gb|ACJ84666.1| unknown [Medicago truncatula]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/321 (72%), Positives = 269/321 (83%), Gaps = 2/321 (0%)

Query: 1   MANAWKRDT-KHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSF 59
           MANAWKRD          + L   F  L LF  F F +   NPNPN +L++ ++F S S 
Sbjct: 1   MANAWKRDKPSRLLSPKLLFLLFSFTLLFLFLYFIFLTPPSNPNPN-FLTLNTNFFSNSI 59

Query: 60  PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
             F+C+K PQSHP++A+VVE V+YPF++SLSD GNLPDKPHKNIVRLLKGK FRKPDISV
Sbjct: 60  TPFDCIKSPQSHPVVASVVEGVRYPFLFSLSDFGNLPDKPHKNIVRLLKGKAFRKPDISV 119

Query: 120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
           T+QE+LEK K +G +GLVVDVGANVGMASFAAAVMGFRVL+FEPV ENLQ++C+GV+FNR
Sbjct: 120 TVQEVLEKAKSKGMDGLVVDVGANVGMASFAAAVMGFRVLAFEPVLENLQKLCEGVYFNR 179

Query: 180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
           V DLVT++EAA SDR+GNIT HKLVGRLDNSAVSATGAKLAFKSNEEIA QVR++PLDEV
Sbjct: 180 VADLVTLFEAAASDRLGNITVHKLVGRLDNSAVSATGAKLAFKSNEEIAFQVRTVPLDEV 239

Query: 240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
           IP +E VLLLKIDVQGWEYHVLKGA+KLLSRK  ++PY IYEEDE LLQASNSSAKEIR+
Sbjct: 240 IPASERVLLLKIDVQGWEYHVLKGASKLLSRKGSQAPYFIYEEDERLLQASNSSAKEIRD 299

Query: 300 FLHSVGYHHCNQHGTDAHCTK 320
           FL +VGYH C QHGTDAHCTK
Sbjct: 300 FLRTVGYHDCTQHGTDAHCTK 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548583|ref|XP_003542680.1| PREDICTED: uncharacterized protein LOC100788849 isoform 1 [Glycine max] gi|356548585|ref|XP_003542681.1| PREDICTED: uncharacterized protein LOC100788849 isoform 2 [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/323 (71%), Positives = 268/323 (82%), Gaps = 6/323 (1%)

Query: 1   MANAWKRDTKHPKLTPKILLSLLFPCLLLFFIFYFNSHSYNPNPNPYLSVTSSFHSPSFP 60
           MANAWKRD     L+PK+L  L    L++FF F F +    P+ NP  ++T+     SF 
Sbjct: 1   MANAWKRDKATRLLSPKLLFLLFSSTLIVFFFFAFLTS--RPS-NPATTLTAFNTRLSFN 57

Query: 61  A---FNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDI 117
           A   F+C   PQ+HP++AN VE V+YPF++SLSD G LPDKPHKNIVR+LKGKPFRKPDI
Sbjct: 58  AISPFDCTASPQAHPVVANTVEGVRYPFLFSLSDFGTLPDKPHKNIVRMLKGKPFRKPDI 117

Query: 118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF 177
           SVT+QE+LEK + EGK+G  VDVGANVGMASFAA+ M FRVL+FEPVFENLQ+IC+GV+F
Sbjct: 118 SVTVQEVLEKARTEGKDGFFVDVGANVGMASFAASAMRFRVLAFEPVFENLQKICEGVYF 177

Query: 178 NRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLD 237
           NRV DLVTV+EAA SDR+GNIT HKLVGRLDNSA+SATGAKLAFKSNEEIA QVR++PLD
Sbjct: 178 NRVADLVTVFEAAASDRVGNITVHKLVGRLDNSAISATGAKLAFKSNEEIAFQVRTVPLD 237

Query: 238 EVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEI 297
           EVIP++E VLLLKIDVQGWEYHVLKGA+KLLSRK  ++PYLIYEEDE LL+ASNSSAKEI
Sbjct: 238 EVIPKSERVLLLKIDVQGWEYHVLKGASKLLSRKGSQAPYLIYEEDERLLRASNSSAKEI 297

Query: 298 REFLHSVGYHHCNQHGTDAHCTK 320
           R+FL SVGYH C QHGTDAHC K
Sbjct: 298 RDFLRSVGYHDCTQHGTDAHCVK 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2043863	319	AT2G26680 "AT2G26680" [Arabido	0.990	0.996	0.701	1.6e-118
UNIPROTKB|P95137	321	Rv2955c "Conserved protein" [M	0.507	0.507	0.311	2.9e-06
UNIPROTKB|Q609S1	253	MCA1157 "Methyltransferase, Fk	0.489	0.620	0.262	0.00044

TAIR|locus:2043863 AT2G26680 "AT2G26680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 226/322 (70%), Positives = 261/322 (81%)

Query:     1 MANAWKRDTKHPKLTPK-IXXXXXXXXXXXXXXXXXNSHSYXXXXXXYLSVTSSFHSPSF 59
             MA+AWK+D     L+PK +                  S+S        LS+ S +  P  
Sbjct:     1 MASAWKKDKNQKLLSPKTLISLLVLSIIFLSSLFFFFSNSSLQYSNPNLSINSPY--P-I 57

Query:    60 PAFNCLKCPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISV 119
             P F+C KCPQS PIIANVVEN+KYPF+YSL+DLGNLP+KPHKNIVRLLKGKPFRKPDIS 
Sbjct:    58 PPFDCFKCPQSKPIIANVVENLKYPFVYSLADLGNLPEKPHKNIVRLLKGKPFRKPDISA 117

Query:   120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR 179
             TIQE+L+ M+  GKNG+VVDVGANVGMASFAAAVMGF+VL+FEPVFENLQRICDG+WFNR
Sbjct:   118 TIQEVLDSMRASGKNGIVVDVGANVGMASFAAAVMGFKVLAFEPVFENLQRICDGIWFNR 177

Query:   180 VGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEV 239
             V  LVTV+EAA SDR G+ITFHKLVGRLDNSAVS  GA+LAFKSN+EIA+QV+SIPLD++
Sbjct:   178 VASLVTVFEAAASDRTGDITFHKLVGRLDNSAVSEVGARLAFKSNKEIAVQVKSIPLDKL 237

Query:   240 IPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
             IP ++PVLL+KIDVQGWEYHVLKGA KLLS K  E+PYLIYEEDE LL ASNSS+KEIR+
Sbjct:   238 IPPSQPVLLIKIDVQGWEYHVLKGAKKLLSGKPAEAPYLIYEEDERLLTASNSSSKEIRD 297

Query:   300 FLHSVGYHHCNQHGTDAHCTKD 321
             FL SVGY  C+QHGTDAHCTK+
Sbjct:   298 FLKSVGYSKCSQHGTDAHCTKE 319

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P95137 Rv2955c "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 133 (51.9 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 56/180 (31%), Positives = 81/180 (45%)

Query:   103 IVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFE 162
             IVRL  G    + DI+  +   L   +       ++DVGANVG+ S A A +   V++ E
Sbjct:   103 IVRLTGGFEETEIDIAAALYSALYPDR------CILDVGANVGIHSLAWARLA-PVVALE 155

Query:   163 PVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFK 222
             P      R+   V  N + D +     A  D +G + F        +SA S+       +
Sbjct:   156 PAPGTHSRLEANVAANGLQDRIRTLRTAAGDAVGEVDFFVAA----DSAFSSLNDTGRIR 211

Query:   223 SNEEIALQVRSIPLDEVIPEAE-PVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYE 281
               E    +V    LD +  E   PV LLKIDV+G E  V+ GA +LL R +   P L+ E
Sbjct:   212 IRERT--RVPCTTLDALAAELPLPVGLLKIDVEGLERAVIAGAAELLRRDR---PVLLVE 266

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q609S1 MCA1157 "Methyltransferase, FkbM family" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 112 (44.5 bits), Expect = 0.00044, P = 0.00044
 Identities = 49/187 (26%), Positives = 86/187 (45%)

Query:   137 VVDVGANVGMASFAAAVM-----GFRVLSFEP---VFENLQRICDGVWFNRVGDLVTVYE 188
             V+D+GA  G   +A  ++     G  + SFEP    F  L+++       R    +  + 
Sbjct:    54 VLDIGACRG--GYAETILRTNFPGASIHSFEPSPIAFPVLEQVAA-----RSAGRIVAHN 106

Query:   189 AAVSDRIGNITFHKLVGRLDNSAVS-ATGAK-LAFKSN---EEIALQVRSIPLDEVIPEA 243
               + +R   +     +  L +S++  AT    LAF      E++ + +R+  LDEV P  
Sbjct:   107 FGLGERTETLKLRSAINSLPSSSLLLATETNTLAFPQTQLTEDLEVDIRA--LDEVAPML 164

Query:   244 EPV----LLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIRE 299
             +P     LL+KIDVQG+E  V++G  + ++R +      I E     L A   S ++I  
Sbjct:   165 DPAIEDDLLVKIDVQGFEDRVIRGGRQTIARARAA----IIEVQVEELYAGQPSFRDIFL 220

Query:   300 FLHSVGY 306
              +  +G+
Sbjct:   221 LMDEMGF 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      321       298   0.00094  115 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  217 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.99u 0.11s 25.10t   Elapsed:  00:00:01
  Total cpu time:  24.99u 0.11s 25.10t   Elapsed:  00:00:01
  Start:  Fri May 10 10:33:42 2013   End:  Fri May 10 10:33:43 2013

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
TIGR01444	144	TIGR01444, fkbM_fam, methyltransferase, FkbM famil	3e-30
pfam05050	174	pfam05050, Methyltransf_21, Methyltransferase FkbM	3e-06

>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family

 Score =  111 bits (279), Expect = 3e-30
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 12/149 (8%)

Query: 137 VVDVGANVGMAS--FAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR 194
           V+DVGAN+G  S  FA      RV++FEP+ +  + + + V  N +   V +  AAV DR
Sbjct: 2   VIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDR 60

Query: 195 IGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEA--EPVLLLKID 252
            G + F+       +S+++A  +       E  +++V  + LD+++ E   + V LLKID
Sbjct: 61  DGELEFNVSDLNTGSSSLAADSSA----DRETESIEVEVVTLDDLVEEFGLDKVDLLKID 116

Query: 253 VQGWEYHVLKGATKLLSRKKGESPYLIYE 281
           V+G E  VL+GA + L RK+   P ++ E
Sbjct: 117 VEGAELEVLRGAAETLLRKR---PGIVLE 142

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144

>gnl|CDD|218402 pfam05050, Methyltransf_21, Methyltransferase FkbM domain

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 29/204 (14%), Positives = 52/204 (25%), Gaps = 65/204 (31%)

Query: 139 DVGANVG--------------MASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLV 184
           D GAN                +           VL+ EP   + +               
Sbjct: 1   DCGANKLEPFRGNPDEFWDSFLNVTKKCDNLKEVLAIEPFPNSDETY------------- 47

Query: 185 TVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPE-- 242
                             ++ +      +        +  + I ++V +I +        
Sbjct: 48  -----------------HILPKFAVGGENGLSTASVLEDIKYITVEVVTIDIIYFFKNIL 90

Query: 243 -AEPVLLLKIDVQGWEYHVLK-------GATKLLSRKKGESPYLIYEEDEH--------L 286
               + +LKID++G EY VL             +   +     +     E          
Sbjct: 91  KKNTIDILKIDIEGAEYPVLDMLHRNGEFDENGIKVCQ---INIEIIIGEKHKFHDFIWR 147

Query: 287 LQASNSSAKEIREFLHSVGYHHCN 310
           L       + IR FL +VG   C 
Sbjct: 148 LLFVYEDFEHIRLFLINVGDEECG 171

This family has members from bacteria to human, and appears to be a methyltransferase. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	99.96
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	99.92
PF05575	286	V_cholerae_RfbT: Vibrio cholerae RfbT protein; Int	99.57
PF13383	242	Methyltransf_22: Methyltransferase domain	98.96
PHA01634	156	hypothetical protein	98.9
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.55
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.55
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.24
PRK07402	196	precorrin-6B methylase; Provisional	98.22
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.04
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.04
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.02
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.02
COG2520	341	Predicted methyltransferase [General function pred	98.0
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.0
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.95
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.94
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.9
COG4123	248	Predicted O-methyltransferase [General function pr	97.89
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.89
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.88
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.86
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.84
PRK11207	197	tellurite resistance protein TehB; Provisional	97.84
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.83
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.83
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.78
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.78
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.78
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.78
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.77
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.76
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.76
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.75
COG4076	252	Predicted RNA methylase [General function predicti	97.71
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.71
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.71
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.7
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.7
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.67
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.67
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.62
PRK04266	226	fibrillarin; Provisional	97.61
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.61
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.61
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.61
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.6
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.58
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.58
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.58
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.57
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.56
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.55
PLN02476	278	O-methyltransferase	97.55
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.55
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.55
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.53
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.5
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.5
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.5
PRK14968	188	putative methyltransferase; Provisional	97.5
PRK12335	287	tellurite resistance protein TehB; Provisional	97.45
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.45
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.43
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.42
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.41
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.41
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.4
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.4
PLN02244	340	tocopherol O-methyltransferase	97.38
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.37
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.36
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.35
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.34
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.33
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.29
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.28
KOG2078	495	consensus tRNA modification enzyme [RNA processing	97.27
PTZ00146	293	fibrillarin; Provisional	97.27
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.26
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.26
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.25
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.25
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.23
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.22
PRK14967	223	putative methyltransferase; Provisional	97.21
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.17
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.13
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.11
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.11
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.08
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.08
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.07
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.05
PLN02672	1082	methionine S-methyltransferase	97.04
PRK06202	232	hypothetical protein; Provisional	97.04
KOG2904	328	consensus Predicted methyltransferase [General fun	97.03
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.03
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.01
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.01
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.99
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.98
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.96
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	96.96
PHA03411	279	putative methyltransferase; Provisional	96.96
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.95
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.95
COG4122	219	Predicted O-methyltransferase [General function pr	96.94
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.94
COG2890	280	HemK Methylase of polypeptide chain release factor	96.94
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.93
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.93
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.93
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.92
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.89
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.88
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.88
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.87
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.87
PF13679	141	Methyltransf_32: Methyltransferase domain	96.87
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.86
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	96.85
PRK04148	134	hypothetical protein; Provisional	96.81
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.8
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.79
PRK04457	262	spermidine synthase; Provisional	96.77
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.72
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.71
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.68
PRK08317	241	hypothetical protein; Provisional	96.64
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	96.62
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.59
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	96.59
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.56
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.55
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.55
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	96.55
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	96.52
PLN02336	475	phosphoethanolamine N-methyltransferase	96.51
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.5
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.48
PLN02336	475	phosphoethanolamine N-methyltransferase	96.47
PRK05785	226	hypothetical protein; Provisional	96.45
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.38
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.28
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.23
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.22
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	96.13
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.07
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.06
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	96.05
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.01
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	95.96
KOG1227	351	consensus Putative methyltransferase [General func	95.92
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	95.87
PRK06922	677	hypothetical protein; Provisional	95.85
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	95.82
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.77
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.74
TIGR03438	301	probable methyltransferase. This model represents	95.7
TIGR00438	188	rrmJ cell division protein FtsJ.	95.68
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.67
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	95.44
PLN03075	296	nicotianamine synthase; Provisional	95.43
PLN02490	340	MPBQ/MSBQ methyltransferase	95.38
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	95.37
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.36
PRK03612	521	spermidine synthase; Provisional	95.35
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.3
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.26
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.19
COG2521	287	Predicted archaeal methyltransferase [General func	95.04
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	94.99
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	94.78
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	94.74
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	94.47
KOG2899	288	consensus Predicted methyltransferase [General fun	94.43
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.41
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	94.29
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	94.28
PHA03412	241	putative methyltransferase; Provisional	94.25
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	94.13
PRK10742	250	putative methyltransferase; Provisional	94.08
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	93.95
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.87
KOG1501	636	consensus Arginine N-methyltransferase [General fu	93.75
KOG1271	227	consensus Methyltransferases [General function pre	93.72
COG3897	218	Predicted methyltransferase [General function pred	93.68
PRK00811	283	spermidine synthase; Provisional	93.39
COG0742	187	N6-adenine-specific methylase [DNA replication, re	93.18
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.11
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	93.08
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	92.9
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	92.85
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	92.7
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	92.69
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	92.32
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	92.25
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	92.2
KOG3010	261	consensus Methyltransferase [General function pred	92.15
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	91.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	91.94
KOG4300	252	consensus Predicted methyltransferase [General fun	91.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.49
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	91.4
KOG2730	263	consensus Methylase [General function prediction o	91.12
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	90.84
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	90.75
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	90.34
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	90.2
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	89.66
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	89.18
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	88.65
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	88.58
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	88.57
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	88.45
KOG2361	264	consensus Predicted methyltransferase [General fun	87.86
PLN02366	308	spermidine synthase	87.83
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	87.76
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	87.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	87.43
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	87.27
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	86.57
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	86.03
PRK11524	284	putative methyltransferase; Provisional	86.02
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	85.43
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	84.81
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	84.65
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	84.28
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	84.09
KOG4058	199	consensus Uncharacterized conserved protein [Funct	83.1
PLN02823	336	spermine synthase	82.99
PRK01581	374	speE spermidine synthase; Validated	81.73
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	81.13
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	81.0
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	80.61

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=99.96  E-value=9.3e-28  Score=202.04  Aligned_cols=139  Identities=37%  Similarity=0.522  Sum_probs=115.7

Q ss_pred             EEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcccc
Q 020824          136 LVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVS  213 (321)
Q Consensus       136 ~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~  213 (321)
                      +++|||||.|.+++++++.+  ++|++|||+|.+++.+++|++.|+. .+++++++|+++++|+++|+.......++++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~~~g~~~~~~~~~~~~~s~~~   79 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDRDGELEFNVSDDDTGNSSLL   79 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeCCCCeEEEEECCCCCCceeee
Confidence            58999999999999999854  6899999999999999999999987 46999999999999999999865333333332


Q ss_pred             ccCcccccccCceeeEEEEEEehhhhcCCC--CCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824          214 ATGAKLAFKSNEEIALQVRSIPLDEVIPEA--EPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEED  283 (321)
Q Consensus       214 ~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~--~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~  283 (321)
                      ....     ......++|+++|||+++++.  .++++|||||||+|++||+|+.++|.+.   +|.|++|+|
T Consensus        80 ~~~~-----~~~~~~~~v~~~~Ld~~l~~~~~~~i~~lKiDiEG~E~~vL~g~~~~l~~~---~~~i~~E~h  143 (143)
T TIGR01444        80 PTPD-----ADRESKVEVEVVTLDDLVEEFGLDKVDLLKIDVEGAELEVLRGAKETLLRK---RPGIVLEVH  143 (143)
T ss_pred             cCCC-----cCCCceEEEEEEEHHHHHHHcCCCCCCEEEEeCCCchHHHHhChHHHHHHh---CCeEEEEeC
Confidence            2111     112345689999999999876  5899999999999999999999998765   699999997

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=99.92  E-value=7.7e-25  Score=187.08  Aligned_cols=158  Identities=32%  Similarity=0.385  Sum_probs=78.9

Q ss_pred             EECCCCc--hHHHHHH--H--cCCEEEEECCChHHHHHHHHh--hhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCc
Q 020824          139 DVGANVG--MASFAAA--V--MGFRVLSFEPVFENLQRICDG--VWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNS  210 (321)
Q Consensus       139 DIGAn~G--~~sl~~a--~--~g~~ViafEP~p~~~~~L~~n--~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s  210 (321)
                      |||||+|  ..+.++.  +  .+++|++|||+|.+++.|++|  +++|.....++++..|+++......+........+.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAVSDGSSFFFAEGDPDGSSSS   80 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-SEE-SS-EEEE---------
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeecCCCceeEEeeecCCCCcee
Confidence            8999999  5444443  3  358999999999999999999  888876556999999999944444444321111111


Q ss_pred             cccccCcccccccCceeeEEEEEEehhhhcCCC-CCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhh
Q 020824          211 AVSATGAKLAFKSNEEIALQVRSIPLDEVIPEA-EPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQA  289 (321)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~-~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~  289 (321)
                      ..        ........++|+++|||+++++. +.||+|||||||+|++||+|+..+|++.   +|.+++|.|... +.
T Consensus        81 ~~--------~~~~~~~~~~v~~~~ld~~~~~~~~~id~lkiDiEG~E~~vL~g~~~~l~~~---~~~~i~E~~~~~-~~  148 (167)
T PF05050_consen   81 TV--------EPNDEGGEVEVPVITLDDILEENIPRIDLLKIDIEGAELEVLKGARELLKKC---RPKVIVEIHHNH-YG  148 (167)
T ss_dssp             -------------------EEEEE-HHHH-SS-----SEEEE--SS-HHHHHHTTHHHHHHH-----EEEEE--S-----
T ss_pred             ee--------cccCCCceEEEEEEEhHHHHhhcCCccEEEEEeCCCCHHHHhhCCcccHhHc---CcEEEEEEcCCc-cc
Confidence            00        00122345789999999998875 6899999999999999999999999887   466569999876 44


Q ss_pred             cCCCHHHHHHHHHcCCCeE
Q 020824          290 SNSSAKEIREFLHSVGYHH  308 (321)
Q Consensus       290 ~~~~~~ei~~~L~~~GY~~  308 (321)
                      .+....++.++|+++||++
T Consensus       149 ~~~~~~~i~~~L~~~Gy~~  167 (167)
T PF05050_consen  149 RQESFREILDFLRDHGYRL  167 (167)
T ss_dssp             -------------------
T ss_pred             cccccccccccccccccCC
Confidence            4567889999999999974

; PDB: 2PY6_A.

>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae

Probab=99.57  E-value=7.2e-15  Score=127.12  Aligned_cols=195  Identities=23%  Similarity=0.302  Sum_probs=144.8

Q ss_pred             HHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          104 VRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       104 ~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +++.....|..|.+...++.++-..+++  +.+++|||||+|.+.-.+|+  ..++++|+||..++-..++.|+.+|+.-
T Consensus        52 vqlnhalsyknpnfdlgmrhwivnhckh--dttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnnpl  129 (286)
T PF05575_consen   52 VQLNHALSYKNPNFDLGMRHWIVNHCKH--DTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNNPL  129 (286)
T ss_pred             hhhcchhccCCCCCccchhHhhhhhccC--CceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCCcc
Confidence            4555566788998888888888887754  58999999999999988887  4699999999999999999999998754


Q ss_pred             CceEEEEEeEecCcceEEEEeecCCCCCccccccCcccccccCce-----eeEEEEEEehhhhcCCCCCCcEEEEecCCc
Q 020824          182 DLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEE-----IALQVRSIPLDEVIPEAEPVLLLKIDVQGW  256 (321)
Q Consensus       182 ~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~-----~~v~V~~~tLD~ll~~~~~idlLKIDVEG~  256 (321)
                      -.++-+.+|+|+.+|+--|....  +++...     ++.|+.+..     ..-+|-++.|.++--.-..-.++|||.||+
T Consensus       130 vefhhfgcaigenegenifevye--fdnrvs-----slyfqkntdiadkvknsqvlvrklssldisptnsvvikidaega  202 (286)
T PF05575_consen  130 VEFHHFGCAIGENEGENIFEVYE--FDNRVS-----SLYFQKNTDIADKVKNSQVLVRKLSSLDISPTNSVVIKIDAEGA  202 (286)
T ss_pred             eeeeecceeecccCCcceEEEEE--ecCccc-----eEEEeccCcHHHhhcchHHHHhhhhccccCCCceEEEEEcCCCc
Confidence            45556678899999986555432  222211     122222211     112455556666532223457999999999


Q ss_pred             hHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHc-CCCe
Q 020824          257 EYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHS-VGYH  307 (321)
Q Consensus       257 E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~-~GY~  307 (321)
                      |.++|....+.-+++.+-.-+|++|+.-.++++.+.++.++.+.+.+ .|-.
T Consensus       203 eieilnqiyeftekhngieyyicfefamghiqrsnrtfdeifniinskfgsk  254 (286)
T PF05575_consen  203 EIEILNQIYEFTEKHNGIEYYICFEFAMGHIQRSNRTFDEIFNIINSKFGSK  254 (286)
T ss_pred             chhHHHHHHHHHhhcCCeEEEEEehhhhhhhhhccccHHHHHHHHhhcccCc
Confidence            99999999998888776445799999999999999999999998864 3433

It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].

>PF13383 Methyltransf_22: Methyltransferase domain

Probab=98.96  E-value=1.8e-09  Score=99.66  Aligned_cols=144  Identities=17%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             CCCCEEEEECCCCch-HHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCC
Q 020824          132 GKNGLVVDVGANVGM-ASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRL  207 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~-~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~  207 (321)
                      .++.+|+=+|-|.-. |-..+++ .|  ++|++|||....-....     +  ..++++++.++++++.....       
T Consensus        82 ~~~C~vySfG~n~~~sFe~~m~~~~g~~C~V~~FD~~~~~~~~~~-----~--~~~~~f~~~gl~~~~~~~~~-------  147 (242)
T PF13383_consen   82 NDDCVVYSFGSNNDWSFEEEMAKRTGRGCEVHAFDPSMQNEDQPQ-----N--SDRIHFHKLGLGSKDSESIN-------  147 (242)
T ss_pred             CCCeEEEEecCCCCcHHHHHHHHhhCCCCeEEEECCCcccccccc-----c--chhhHHHhccccCCcccccc-------
Confidence            356789999965433 4444443 45  99999998765432211     1  25788888888776643100       


Q ss_pred             CCccccccCcccccccCceeeEEEEEEehhhhcCCC----CCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824          208 DNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEA----EPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEED  283 (321)
Q Consensus       208 ~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~----~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~  283 (321)
                                      . .     .+.||.+++++.    ..||+|||||||+|+.||+...   +..   ...|++|+|
T Consensus       148 ----------------~-~-----~~~tl~~i~~~lgH~~~~idiLKiDIEG~Ew~~L~~~l---~~~---~~Qi~iEiH  199 (242)
T PF13383_consen  148 ----------------P-K-----LVYTLSDIMKMLGHKGREIDILKIDIEGAEWTVLEPLL---ESG---VCQILIEIH  199 (242)
T ss_pred             ----------------c-h-----hhccHHHHHHHhcCCCccccEEEEEcCccHHHHHHHHH---hcC---CcEEEEEEE
Confidence                            0 0     045888887753    4799999999999999998654   333   358999999


Q ss_pred             ccchhhcCCCHHHHHHHHHcCCCeEEEEeCCcccee
Q 020824          284 EHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCT  319 (321)
Q Consensus       284 ~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~~  319 (321)
                      .....  .....++++.|+++||+++....+.++|.
T Consensus       200 ~~~~~--~~~~~~~l~~l~~~gfr~F~~e~N~~~~~  233 (242)
T PF13383_consen  200 GWPSE--HREWYKLLQELEKAGFRLFNVEPNPWYCG  233 (242)
T ss_pred             eCccc--hhHHHHHHHHHHHCCcEEEEecCChhhCc
Confidence            74211  12245799999999999999888876664

>PHA01634 hypothetical protein

Probab=98.90  E-value=2.9e-08  Score=82.19  Aligned_cols=123  Identities=15%  Similarity=0.167  Sum_probs=89.3

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcc
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSA  211 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~  211 (321)
                      .+.+|+||||++|..+++|+..|+ +|+|+||+|...+.+++|++.|..      ...|++..                 
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI------~DK~v~~~-----------------   84 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI------CDKAVMKG-----------------   84 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee------eeceeecc-----------------
Confidence            679999999999999999999996 699999999999999999886632      22222111                 


Q ss_pred             ccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcC
Q 020824          212 VSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASN  291 (321)
Q Consensus       212 l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~  291 (321)
                                             ....   +.++.|+.|||+||-|-.+=-+.   |++.+    .-.+..|...     
T Consensus        85 -----------------------eW~~---~Y~~~Di~~iDCeGCE~~l~v~~---l~ky~----q~ci~ihdwt-----  126 (156)
T PHA01634         85 -----------------------EWNG---EYEDVDIFVMDCEGCEEKLNVSM---LKKYK----QWCIGIHDWT-----  126 (156)
T ss_pred             -----------------------cccc---cCCCcceEEEEccchHHhcCHHH---HHHHH----hheeeeehhh-----
Confidence                                   0111   35688999999999998764433   33331    3466666542     


Q ss_pred             CCHHHHHHHHHcCCCeEEEEeCCcc
Q 020824          292 SSAKEIREFLHSVGYHHCNQHGTDA  316 (321)
Q Consensus       292 ~~~~ei~~~L~~~GY~~~~~~G~~~  316 (321)
                      .+.-++++-|...-|+..+.+|...
T Consensus       127 ~nrvel~rk~~g~~ftyvsddgre~  151 (156)
T PHA01634        127 KNRVELMRKMEGATFTYVSDDGREI  151 (156)
T ss_pred             hhHHHHHHHhcCcEEEEEccCCcEE
Confidence            3456888888888888777777554

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.55  E-value=3.5e-07  Score=73.03  Aligned_cols=59  Identities=25%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      |+..|+|||||.|.+++.+++  .+++|+++|++|..++..+++...++..+++++++.-+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            468999999999999999998  78999999999999999999986666667888877544

...

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.55  E-value=2e-07  Score=83.68  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=56.6

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      +.|+.|....+-+++... .  .++.+|+|.-||+|.|++.+|+  .+.+|+|+|.||.+++.|++|+++|++.+++.++
T Consensus        81 kvyfs~rl~~Er~Ri~~~-v--~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~  157 (200)
T PF02475_consen   81 KVYFSPRLSTERRRIANL-V--KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI  157 (200)
T ss_dssp             TS---GGGHHHHHHHHTC-----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE
T ss_pred             eEEEccccHHHHHHHHhc-C--CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence            467778776655665443 3  4679999999999999999998  5689999999999999999999999998777766


Q ss_pred             EE
Q 020824          188 EA  189 (321)
Q Consensus       188 ~~  189 (321)
                      +.
T Consensus       158 ~~  159 (200)
T PF02475_consen  158 NG  159 (200)
T ss_dssp             ES
T ss_pred             cC
Confidence            54

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.24  E-value=8.4e-06  Score=72.07  Aligned_cols=72  Identities=22%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      |-+.++++.+.-..+...++++++|||||.|..++.++.  +.++|+|||-+++..+.+++|.+..+. +|++++
T Consensus        16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv   89 (187)
T COG2242          16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVV   89 (187)
T ss_pred             CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEE
Confidence            445566666666667778999999999999999998885  469999999999999999999987774 566654

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.22  E-value=9.7e-06  Score=71.96  Aligned_cols=72  Identities=21%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      |-...++..++-..+...++.+++|+|||.|.++..+++  .+++|+++|++|...+.+++|++.++. ++++++
T Consensus        22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~   95 (196)
T PRK07402         22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVI   95 (196)
T ss_pred             CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEE
Confidence            344555665555566656789999999999999999886  358999999999999999999887765 345443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.04  E-value=7.8e-05  Score=74.22  Aligned_cols=139  Identities=19%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             HHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecC
Q 020824          126 EKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVG  205 (321)
Q Consensus       126 ~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~  205 (321)
                      ...+...++..++|+|||.|.+++.+++.+.+|+++|.++.+++..++|...|++ +++++              ...  
T Consensus       285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~--------------~~~--  347 (431)
T TIGR00479       285 LEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEF--------------LAG--  347 (431)
T ss_pred             HHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEE--------------EeC--
Confidence            3344445668999999999999999998778999999999999999999998876 33332              210  


Q ss_pred             CCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEec--CCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824          206 RLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDV--QGWEYHVLKGATKLLSRKKGESPYLIYEED  283 (321)
Q Consensus       206 ~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDV--EG~E~~VL~G~~~~L~~~k~~~p~IiiE~~  283 (321)
                      +.  ..                       .+.++.......|++-+|-  .|...++|+...+ +..    ...+++..+
T Consensus       348 d~--~~-----------------------~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~-l~~----~~ivyvsc~  397 (431)
T TIGR00479       348 TL--ET-----------------------VLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIE-LKP----ERIVYVSCN  397 (431)
T ss_pred             CH--HH-----------------------HHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHh-cCC----CEEEEEcCC
Confidence            00  00                       0001100112356777776  3667788875443 221    134556655


Q ss_pred             ccchhhcCCCHHHHHHHHHcCCCeEEEEeCCccce
Q 020824          284 EHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHC  318 (321)
Q Consensus       284 ~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~  318 (321)
                      +.       ++..-...|.+.||++.....=|+|.
T Consensus       398 p~-------tlard~~~l~~~gy~~~~~~~~DmFP  425 (431)
T TIGR00479       398 PA-------TLARDLEFLCKEGYGITWVQPVDMFP  425 (431)
T ss_pred             HH-------HHHHHHHHHHHCCeeEEEEEEeccCC
Confidence            43       34445666778999988877766664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.04  E-value=1.7e-05  Score=75.31  Aligned_cols=63  Identities=30%  Similarity=0.378  Sum_probs=52.1

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      -++|..+..  ++.+|+|||||.|..++.+++.|+ +|+|+|-+|..++..++|.++|++..++.+
T Consensus       152 l~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v  215 (295)
T PF06325_consen  152 LELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV  215 (295)
T ss_dssp             HHHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred             HHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence            345666653  568999999999999999999995 799999999999999999999998765544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.02  E-value=5.3e-05  Score=70.05  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=53.3

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..+.  .++.+++|||||.|.++..+++.|.+|+++|+++...+..+++...+++.++++++..
T Consensus        35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~  100 (255)
T PRK11036         35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC  100 (255)
T ss_pred             HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc
Confidence            34444443  3568999999999999999999999999999999999999998877666556666554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.02  E-value=4.2e-05  Score=67.28  Aligned_cols=73  Identities=18%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      |-..+.+...+-..++..++.+++|||||.|..+..+++.  +++|+++|+++...+.+++|+..+++ .++++++
T Consensus        13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~   87 (187)
T PRK08287         13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIP   87 (187)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEe
Confidence            4344444444444445557889999999999999999874  57999999999999999999887765 3455543

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.00  E-value=1.5e-05  Score=76.88  Aligned_cols=71  Identities=21%  Similarity=0.251  Sum_probs=60.0

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhhhhcCCCCc
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGVWFNRVGDL  183 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~~lN~~~~~  183 (321)
                      +.|+.|....+-.+++...   .+|.+|+|.=||+|.||+.+|+.|.. |+|+|-||..++.|++|+.+|++.+.
T Consensus       168 Kv~Fsprl~~ER~Rva~~v---~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~  239 (341)
T COG2520         168 KVYFSPRLSTERARVAELV---KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGR  239 (341)
T ss_pred             HeEECCCchHHHHHHHhhh---cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccce
Confidence            4677787776666665544   36899999999999999999998864 99999999999999999999998654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.00  E-value=6.7e-05  Score=60.43  Aligned_cols=54  Identities=24%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ..+...++..++|+|||.|.++..+++.  +.+|+++|+++...+..+++++.++.
T Consensus        13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   68 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV   68 (124)
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            3333346789999999999999999873  57999999999999999998876654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.95  E-value=4.2e-05  Score=68.01  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..++|||||.|..++.+++  ++++|+++|+++...+..+++.+.+++. ++++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~   99 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTV   99 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEE
Confidence            478999999999999998886  5689999999999999999999888763 3444

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=9.8e-05  Score=65.44  Aligned_cols=63  Identities=30%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcce
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGN  197 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~  197 (321)
                      ++.+|+|.|||.|..++.++-.| .+|+|||++|+..+.+++|...+  ..++.++.+=+++-.+.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~~~  108 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFRGK  108 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcCCc
Confidence            67899999999999999999998 68999999999999999998752  24566655555444443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.90  E-value=8.1e-05  Score=66.77  Aligned_cols=61  Identities=18%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .+...++..++|||||.|+.+..+++ .  +++|+++|.++...+..++|+..++..+++++++
T Consensus        67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~  130 (205)
T PRK13944         67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH  130 (205)
T ss_pred             hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            34445778999999999999998886 3  4799999999999999999988777644455544

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.89  E-value=2.8e-05  Score=71.91  Aligned_cols=70  Identities=21%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      +|.++........++|+|||.|..++.+|+. . ++|++||-++++++..++|+++|++..++++++.=+-+
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~  106 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE  106 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHH
Confidence            5667776667899999999999999999974 4 89999999999999999999999999999998876644

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.89  E-value=0.00011  Score=65.53  Aligned_cols=70  Identities=11%  Similarity=0.122  Sum_probs=52.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +.+++..+.-..+...++..++|+|||.|.+++.+++ .  +.+|+++|.++..++..++|+..+++.+++++
T Consensus        24 t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~   96 (198)
T PRK00377         24 TKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVL   96 (198)
T ss_pred             CHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEE
Confidence            3344444433334456889999999999999998876 3  47999999999999999999887774345554

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.88  E-value=0.0001  Score=64.17  Aligned_cols=76  Identities=25%  Similarity=0.327  Sum_probs=55.6

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      +.|..+.......-+++.+.. .++..++|+|||.|..++.+++.+  .+|+++|-++...+..++|+..|++.+ ++++
T Consensus         9 gvFs~~~~d~~t~lL~~~l~~-~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~   86 (170)
T PF05175_consen    9 GVFSPPRLDAGTRLLLDNLPK-HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVV   86 (170)
T ss_dssp             TSTTTTSHHHHHHHHHHHHHH-HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEE
T ss_pred             CeeCCCCCCHHHHHHHHHHhh-ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccc
Confidence            445434433333333333333 267899999999999999999854  579999999999999999999998753 5554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.86  E-value=0.00013  Score=64.94  Aligned_cols=54  Identities=19%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..++|++||.|..++.++..|+ +|+++|-++..++.+++|++.|+..+++++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~  103 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEV  103 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEE
Confidence            578999999999999999999885 899999999999999999998876434443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.84  E-value=0.00091  Score=62.04  Aligned_cols=64  Identities=13%  Similarity=0.039  Sum_probs=47.4

Q ss_pred             chhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          116 DISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      +.+..++.++..+....+...++|+|||.|..++.+++  .+.+|+++|.+|...+..++|...|+
T Consensus        69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~  134 (251)
T TIGR03704        69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG  134 (251)
T ss_pred             cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            44443444444322122345899999999999999886  36799999999999999999988765

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.84  E-value=8.4e-05  Score=66.26  Aligned_cols=49  Identities=20%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..++|+|||.|..+.++++.|++|+++|+++..++..+++.+.+++
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~   77 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL   77 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3568999999999999999999999999999999999999988876655

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.83  E-value=0.0001  Score=73.90  Aligned_cols=76  Identities=29%  Similarity=0.325  Sum_probs=58.0

Q ss_pred             chhHHHHHHHHHHhcCC----CCCEEEEECCCCchHHHHHHHcC------CEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824          116 DISVTIQEILEKMKKEG----KNGLVVDVGANVGMASFAAAVMG------FRVLSFEPVFENLQRICDGVWFNRVGDLVT  185 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~~----~~~~vvDIGAn~G~~sl~~a~~g------~~ViafEP~p~~~~~L~~n~~lN~~~~~v~  185 (321)
                      .|++.+.+.|....+..    ++.+|+|||||.|..+..+++.+      .+|+|+|.||..+..+++.+..|+++++|+
T Consensus       165 ~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~  244 (448)
T PF05185_consen  165 QYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVT  244 (448)
T ss_dssp             HHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEE
T ss_pred             HHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEE
Confidence            45566666666665432    25799999999999988877643      589999999999999988878899988999


Q ss_pred             EEEEeE
Q 020824          186 VYEAAV  191 (321)
Q Consensus       186 ~~~~Al  191 (321)
                      +++.=+
T Consensus       245 vi~~d~  250 (448)
T PF05185_consen  245 VIHGDM  250 (448)
T ss_dssp             EEES-T
T ss_pred             EEeCcc
Confidence            988654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.83  E-value=0.00013  Score=65.51  Aligned_cols=66  Identities=11%  Similarity=-0.020  Sum_probs=51.0

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      |..+...+.++..+....++.+++|+|||.|..++.++..+ .+|+++|-++..++.+++|++.|+.
T Consensus        35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~  101 (199)
T PRK10909         35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA  101 (199)
T ss_pred             cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            66655444555544332356899999999999999765444 6999999999999999999998875

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.78  E-value=7.3e-05  Score=66.01  Aligned_cols=56  Identities=13%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++..++|||||.|..++.++..  +++|+++|+++..++.++++.+.+++ +++++++.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~   99 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNG   99 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEec
Confidence            4689999999999999998763  47999999999999999998887765 34555443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.78  E-value=0.00031  Score=71.62  Aligned_cols=56  Identities=9%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             CCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          134 NGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...|+|+|||.|..++.+++  ++++|+++|.++...+..++|...|++.+++++++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~  196 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS  196 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeec
Confidence            46899999999999998875  468999999999999999999988887666766553

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.78  E-value=0.00016  Score=65.22  Aligned_cols=57  Identities=19%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..++..|+|||||.|+.+..+++. +  ++|+++|++++..+..+++++.++. .++++
T Consensus        72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~  131 (212)
T PRK13942         72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEV  131 (212)
T ss_pred             cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEE
Confidence            34457899999999999999988863 3  7999999999999999999886665 34443

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.78  E-value=0.00016  Score=68.26  Aligned_cols=76  Identities=14%  Similarity=0.088  Sum_probs=59.2

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .|+.+..++..+...+...+...++|+|||.|..++.+++.  +++|+++|.++..++..++|...|++.+++++++.
T Consensus       102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~  179 (284)
T TIGR03533       102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS  179 (284)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            35566666666654443234578999999999999999873  68999999999999999999998887656766554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.77  E-value=8.7e-05  Score=59.60  Aligned_cols=57  Identities=25%  Similarity=0.167  Sum_probs=50.0

Q ss_pred             CCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          134 NGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      |.+|+|+|||.|.+.+.+++.+ .+++++|-+|...+..+.|+..++...+++++..-
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D   58 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD   58 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc
Confidence            4689999999999999999887 99999999999999999999998876666665543

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.76  E-value=0.00012  Score=65.27  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=43.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..++|+|||.|..+.++++.|++|+++|.++...+.++++.+.+++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~   77 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL   77 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence            467999999999999999999999999999999999999887765554

Part of a tellurite-reducing operon tehA and tehB

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.76  E-value=0.00013  Score=69.87  Aligned_cols=53  Identities=15%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..++|+|||.|.+++.+++.+.+|+++|.++..++..++|...|++ +++++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~  225 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQF  225 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEE
Confidence            568999999999999999999889999999999999999999998876 44444

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.75  E-value=0.00019  Score=66.13  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHH----cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          132 GKNGLVVDVGANVGMASFAAAV----MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~----~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .++..++|||||.|..+..+++    ++++|+++|++|.+.+..++++..++...+++++..-
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d  117 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD  117 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence            4678999999999999887765    4689999999999999999998876665567776543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.71  E-value=5e-05  Score=67.25  Aligned_cols=56  Identities=20%  Similarity=0.122  Sum_probs=50.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..+++.|+|||.|..|+.+|+...||+|+|-+|..+..+.+|+..|+. .++++++-
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~g   87 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVG   87 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEec
Confidence            448999999999999999999888999999999999999999998887 57777543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.71  E-value=0.00024  Score=63.96  Aligned_cols=56  Identities=21%  Similarity=0.101  Sum_probs=46.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++.+++|||||.|.++..+++.+.+|+++|++|...+..+++...++...++++.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~  109 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFE  109 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            46799999999999999999988899999999999999999887765543344443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.71  E-value=0.00086  Score=65.77  Aligned_cols=53  Identities=13%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..++|+|||.|.+++.++..+.+|+++|-++..++..++|.+.|++ +++++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~  285 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSF  285 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEE
Confidence            457999999999999999998889999999999999999999988876 24443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.70  E-value=0.00022  Score=67.16  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +|+++..++..+..+....+...++|+|||.|..++.+++  .+++|+++|.++...+..++|...|++.++++++..
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~  172 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS  172 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            4566666666666554333336899999999999999987  358999999999999999999998887545666553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.70  E-value=0.00022  Score=64.32  Aligned_cols=59  Identities=19%  Similarity=0.091  Sum_probs=48.7

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +...++..++|||||.|+.+..+++.   .++|+++|.+|..++..++|+..+++ +++++..
T Consensus        73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~  134 (215)
T TIGR00080        73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIV  134 (215)
T ss_pred             hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEE
Confidence            34457899999999999999999874   35799999999999999999887776 4565543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.67  E-value=0.0002  Score=68.09  Aligned_cols=60  Identities=12%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...++++++|||||.|..|..+++.+.+|+++|.++..++.+++++..++..+++++++.
T Consensus        33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~   92 (294)
T PTZ00338         33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG   92 (294)
T ss_pred             CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            335789999999999999999998888999999999999999999876554456777664

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.67  E-value=0.00026  Score=67.65  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .|+++..+...+..+++..+...++|+|||.|..++.+++.  +++|+++|.++..++..++|...|++.+++++++.-
T Consensus       114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            34565555555554443222368999999999999999863  689999999999999999999988876667766543

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.62  E-value=0.00012  Score=70.00  Aligned_cols=67  Identities=33%  Similarity=0.351  Sum_probs=54.4

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      +.+..+. .+.+|+|||||.|..|+++++.| .+|+|+|++. +.+..++.++-|.+.++|+++..-+-+
T Consensus       170 l~N~sDF-~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd  237 (517)
T KOG1500|consen  170 LENHSDF-QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED  237 (517)
T ss_pred             Hhccccc-CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc
Confidence            3444433 68999999999999999999998 5899999975 777888888889988999987765543

>PRK04266 fibrillarin; Provisional

Probab=97.61  E-value=0.0019  Score=59.08  Aligned_cols=48  Identities=15%  Similarity=0.019  Sum_probs=40.5

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +...++..|+|+|||.|.++..+++.  +++|+++|.++..++.+.++..
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~  117 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE  117 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence            44457899999999999999999874  4799999999999988776543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.61  E-value=0.00037  Score=62.48  Aligned_cols=54  Identities=15%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .+++..++..++|||||.|+.+..+++.+.+|+++|.++...+..++++..+++
T Consensus        72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~  125 (212)
T PRK00312         72 ELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL  125 (212)
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC
Confidence            344456789999999999999998888767999999999999999999876655

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.61  E-value=0.00038  Score=62.81  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .....-++|..+.+......+++||++.|+-++++|+ .  +++|+++|.+|+.++..++++...++.++|+++
T Consensus        29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~  102 (205)
T PF01596_consen   29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVI  102 (205)
T ss_dssp             HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred             cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE
Confidence            3333445555555433557999999999999999997 2  689999999999999999999988876666653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.61  E-value=0.00021  Score=67.82  Aligned_cols=52  Identities=23%  Similarity=0.282  Sum_probs=40.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHH
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICD  173 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~  173 (321)
                      .+++...+- .-.|.+|+|||||.|+|+..|++.|+ .|++|||++..+-..+.
T Consensus       104 W~rl~p~l~-~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~  156 (315)
T PF08003_consen  104 WDRLLPHLP-DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEA  156 (315)
T ss_pred             HHHHHhhhC-CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHH
Confidence            345444443 34789999999999999999999886 69999999987766543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.60  E-value=0.00024  Score=63.62  Aligned_cols=54  Identities=7%  Similarity=0.046  Sum_probs=45.8

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++..++|||||.|..+..+++  ++.+|+++|+++..++.++++...+++ .+++++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~   95 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLL   95 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEE
Confidence            568999999999999998876  357999999999999999999887765 455543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.58  E-value=0.00029  Score=64.73  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=51.8

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      -++|..+.+..+...++|||++.|+-++++++ .  +++|+++|.+|+.++..++|++.+++.+++++
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~  124 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINF  124 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            34555555445678999999999999998876 2  47999999999999999999998887554444

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.58  E-value=0.00029  Score=61.01  Aligned_cols=45  Identities=16%  Similarity=0.086  Sum_probs=41.2

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .+++.++|||||.|..+..+++.+.+|+++|.++..++.+++++.
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~   56 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA   56 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc
Confidence            467899999999999999999888899999999999999998864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.58  E-value=0.00038  Score=69.74  Aligned_cols=53  Identities=17%  Similarity=0.120  Sum_probs=47.3

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .+...++..++|+|||.|.+++.+++.+.+|+++|.++.+++..++|...|++
T Consensus       292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~  344 (443)
T PRK13168        292 WLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL  344 (443)
T ss_pred             HhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            34445678999999999999999998888999999999999999999988876

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.57  E-value=0.00031  Score=61.33  Aligned_cols=49  Identities=18%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..++|+|||.|..+..+++.+.+|+++|.+|..++..++|+..|+.
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   66 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV   66 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4567899999999999999998777999999999999999999987764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.56  E-value=0.00041  Score=65.56  Aligned_cols=59  Identities=27%  Similarity=0.339  Sum_probs=48.8

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCce
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLV  184 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v  184 (321)
                      .+..+.  .++.+|+|||||.|..++.+++.| .+|+++|.+|..++..++|...|++..++
T Consensus       152 ~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~  211 (288)
T TIGR00406       152 WLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL  211 (288)
T ss_pred             HHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce
Confidence            344443  356899999999999999988877 58999999999999999999988875433

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.55  E-value=0.0003  Score=65.90  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+++.++|||||.|..|..+++.+.+|+++|.++..++.++++...    +++++++.
T Consensus        39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~   94 (272)
T PRK00274         39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEG   94 (272)
T ss_pred             CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEC
Confidence            345778999999999999999998777999999999999999887531    35555544

>PLN02476 O-methyltransferase

Probab=97.55  E-value=0.00084  Score=63.32  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ......++|..+.+..+...++|||.+.|+.++++++ +  +++|+++|.+|+.++..++|++.+++.++|+++
T Consensus       102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li  175 (278)
T PLN02476        102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK  175 (278)
T ss_pred             cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            3444445566666555678999999999999999997 2  579999999999999999999988876555553

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.55  E-value=0.0012  Score=65.56  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=53.9

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +|+.+..++.++..+   .++..++|+|||.|..++.+++  ++++|+++|.+|...+..++|.+.|+.  ++++.+.
T Consensus       235 RpeTE~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g  307 (423)
T PRK14966        235 RPETEHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG  307 (423)
T ss_pred             CccHHHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc
Confidence            355555555555443   2457999999999999998875  468999999999999999999987753  5665543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00023  Score=67.54  Aligned_cols=57  Identities=32%  Similarity=0.429  Sum_probs=50.8

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +.|++..+  ++.+++|+|||.|..++.+++.|+ +|+++|-+|...+.-++|..+|++.
T Consensus       154 ~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~  211 (300)
T COG2264         154 EALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE  211 (300)
T ss_pred             HHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc
Confidence            44666664  679999999999999999999996 6999999999999999999999874

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.53  E-value=0.00069  Score=60.94  Aligned_cols=57  Identities=16%  Similarity=0.081  Sum_probs=47.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..|+|||||.|.++..+++.+.+|+++|+++..++..+++...++..+++++..
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~  118 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEV  118 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE
Confidence            357899999999999999999888899999999999999998876555433455544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.50  E-value=0.00034  Score=64.67  Aligned_cols=49  Identities=27%  Similarity=0.331  Sum_probs=43.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..++|||||.|..++.+++.|. +|+++|.+|..++..++|...|++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~  167 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV  167 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            3678999999999999998888775 599999999999999999988875

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.50  E-value=0.0003  Score=67.69  Aligned_cols=56  Identities=20%  Similarity=0.150  Sum_probs=45.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ++..|+|||||.|.++..+++.|++|+++|+++..++..+++...++...+++++.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~  186 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC  186 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe
Confidence            56799999999999999999999999999999999999887765544333454443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00049  Score=62.07  Aligned_cols=63  Identities=19%  Similarity=0.121  Sum_probs=52.8

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +-.++...+++.|++||+|.||.+..+|+...+|+++|=.+...+.-++|+...+.. ||++.+
T Consensus        64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~  126 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRH  126 (209)
T ss_pred             HHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEE
Confidence            334455678999999999999999999998779999999999999999998877763 455543

>PRK14968 putative methyltransferase; Provisional

Probab=97.50  E-value=0.00051  Score=59.62  Aligned_cols=56  Identities=21%  Similarity=0.230  Sum_probs=47.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCc-eEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDL-VTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~-v~~~  187 (321)
                      .++..++|+|||.|..+..+++.+.+|+++|.+++.++..++++..|+..++ +.+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI   78 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEE
Confidence            4678999999999999999988899999999999999999999988776432 4443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.45  E-value=0.00056  Score=64.47  Aligned_cols=48  Identities=23%  Similarity=0.336  Sum_probs=43.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +++.++|||||.|..++++++.|++|+++|.++..++.++++...+++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l  167 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL  167 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            346999999999999999999999999999999999999988876654

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.45  E-value=0.00064  Score=63.20  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=47.0

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..++|||||.|..|..+++.+.+|+++|.++..++.+++++..   .+++++++.
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~   82 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEG   82 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEe
Confidence            34679999999999999999998888999999999999999987643   245666654

>TIGR00452 methyltransferase, putative

Probab=97.43  E-value=0.0018  Score=62.20  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHH
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRIC  172 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~  172 (321)
                      .++.+|+|||||.|+++..++..|. +|+++||++..+...+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~  161 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE  161 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            4678999999999999999888774 7999999998776543

Known examples to date are restricted to the proteobacteria.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.42  E-value=0.00064  Score=62.90  Aligned_cols=56  Identities=13%  Similarity=0.063  Sum_probs=46.3

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++++++|||||.|..|..+++.+.+|+++|+++..++.++++...   ..++++++.
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~   82 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEG   82 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEEC
Confidence            35678999999999999999999888899999999999999877642   245665543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00740 methyltransferase, putative

Probab=97.41  E-value=0.001  Score=60.74  Aligned_cols=57  Identities=14%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHH----cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV----MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~----~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..++|||||.|.++..+++    ++++|+++|+++..++..++++...+...+++++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~  112 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC  112 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            3678999999999999988876    36899999999999999988876444334565554

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.41  E-value=0.00059  Score=64.20  Aligned_cols=60  Identities=20%  Similarity=0.111  Sum_probs=47.0

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +..+|..|+|||||+|..+.++++. |++|+++.-+++-.+..++.+...++.+++++...
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~  119 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ  119 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe
Confidence            3468999999999999999999985 99999999999999999999888887777776554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.40  E-value=0.00075  Score=63.63  Aligned_cols=73  Identities=18%  Similarity=0.057  Sum_probs=61.2

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcce
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGN  197 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~  197 (321)
                      +...++..+|.+++|||||+|..++++|+ .|.+|+++.-+++-++..++.+..-++..++++.-...-+-++.
T Consensus        64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            33445567999999999999999999998 59999999999999999999888888876788877666665554

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.40  E-value=0.00072  Score=57.27  Aligned_cols=55  Identities=13%  Similarity=0.150  Sum_probs=45.9

Q ss_pred             CCCEEEEECCCCchHHHHHH-Hc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAA-VM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a-~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ++.+|+|+|||.|.++..++ +.  +.+++++|.++..++..++....++.. ++++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~   60 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQ   60 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEE
Confidence            56899999999999999999 43  689999999999999999988877764 566544

...

>PLN02244 tocopherol O-methyltransferase

Probab=97.38  E-value=0.00097  Score=64.52  Aligned_cols=57  Identities=21%  Similarity=0.105  Sum_probs=48.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..|+|||||.|..+..+++ .|++|+++|.++..++..+++...+++.+++++..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~  174 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV  174 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            4678999999999999999987 48999999999999999998887776655666544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.37  E-value=0.0013  Score=59.37  Aligned_cols=59  Identities=15%  Similarity=-0.070  Sum_probs=46.6

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .+...++..++|||||.|.++..+++.   +++|+++|.+|...+..+++...++. ++++++
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~  101 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELV  101 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEE
Confidence            334456789999999999999988762   47999999999999999988775554 345443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.36  E-value=0.00083  Score=60.80  Aligned_cols=58  Identities=24%  Similarity=0.173  Sum_probs=46.5

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +..++..|+|||+|.|+.+..+++. |  ++|+++|.+|...+..+++++..+. .++++..
T Consensus        69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~  129 (209)
T PF01135_consen   69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVV  129 (209)
T ss_dssp             TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEE
T ss_pred             hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEE
Confidence            3568899999999999999999984 4  5899999999999999999987776 3566644

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.35  E-value=0.00093  Score=65.06  Aligned_cols=51  Identities=22%  Similarity=0.111  Sum_probs=44.7

Q ss_pred             CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          135 GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ..++|+|||.|.+++.+++...+|+++|.++.+++.+++|...|++. ++++
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~  249 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQI  249 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence            46999999999999988886679999999999999999999999873 4444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.34  E-value=0.00061  Score=57.21  Aligned_cols=49  Identities=22%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             HHHHHHHhc-CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHH
Q 020824          122 QEILEKMKK-EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQR  170 (321)
Q Consensus       122 ~~~L~~~~~-~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~  170 (321)
                      .+.+.++.. ..++..|+|||||.|.++..+++.|.+|+++|+++...+.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK   59 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence            344555553 3578999999999999999998889999999999998888

...

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.33  E-value=0.001  Score=59.47  Aligned_cols=49  Identities=20%  Similarity=0.196  Sum_probs=41.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      -+.+.++|+|||.|-.++++|+.|+.|.|+|-++..++.+.+..+.+++
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l   77 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL   77 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc
Confidence            3568999999999999999999999999999999999999877665655

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.29  E-value=0.00059  Score=65.63  Aligned_cols=61  Identities=31%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR  194 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~  194 (321)
                      ++.+|+|||||.|..|+++|+.|+ +|+|+|...-. +.-.+.+..|++.+.|++...-+.+-
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI  121 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence            679999999999999999999995 89999998755 77788888999987788777666553

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.28  E-value=0.00071  Score=60.08  Aligned_cols=56  Identities=14%  Similarity=0.006  Sum_probs=46.6

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +..+++|||||.|.++..+++  ++++|+++|.++..++..+++...+++ .++++++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~   73 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCG   73 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence            457999999999999998887  468999999999999999988887766 36665443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=97.27  E-value=0.0002  Score=70.35  Aligned_cols=79  Identities=20%  Similarity=0.268  Sum_probs=65.0

Q ss_pred             cCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCc-eEEE
Q 020824          109 GKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDL-VTVY  187 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~-v~~~  187 (321)
                      +..||.+.++.+-.++ ..+.  .+|.++.|+=||+|.+++.+++.|++|+|++-||+.++.|+.|+.+|.+.+. |.++
T Consensus       228 skVYWnsRL~~Eherl-sg~f--k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~  304 (495)
T KOG2078|consen  228 SKVYWNSRLSHEHERL-SGLF--KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIF  304 (495)
T ss_pred             ceEEeeccchhHHHHH-hhcc--CCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeee
Confidence            3456666665544443 4444  4779999999999999999999999999999999999999999999998765 8888


Q ss_pred             EEe
Q 020824          188 EAA  190 (321)
Q Consensus       188 ~~A  190 (321)
                      |+-
T Consensus       305 Nmd  307 (495)
T KOG2078|consen  305 NMD  307 (495)
T ss_pred             ccc
Confidence            874

>PTZ00146 fibrillarin; Provisional

Probab=97.27  E-value=0.0099  Score=56.45  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHH
Q 020824          132 GKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICD  173 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~  173 (321)
                      .++.+|+|+||+.|+++..++. .|  ++|+|+|.++...+.|.+
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~  175 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTN  175 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHH
Confidence            4789999999999999999997 33  799999999887766554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.26  E-value=0.0014  Score=64.76  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC-CceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG-DLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~~  187 (321)
                      ++..|+|+|||.|.+++.++..|+ +|+++|.++..++..++|+++|++. ++++++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i  276 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV  276 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence            568999999999999998777664 8999999999999999999999874 244443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.26  E-value=0.0015  Score=59.42  Aligned_cols=71  Identities=24%  Similarity=0.216  Sum_probs=53.0

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      |+....+..++..+.  ..+..++|+|||.|..+..+++.  +.+|+++|.++..++..+++...+++. ++++.+
T Consensus        71 ~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~  143 (251)
T TIGR03534        71 PDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQ  143 (251)
T ss_pred             CChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            344443444444432  24468999999999999999873  679999999999999999999877763 555544

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.25  E-value=0.0011  Score=63.67  Aligned_cols=64  Identities=16%  Similarity=0.068  Sum_probs=43.9

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      .+..-++.+|+|||||.|+++..++..|. +|+++||++..+...+......+...++++....+
T Consensus       117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~  181 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI  181 (322)
T ss_pred             hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH
Confidence            33334678999999999999999998774 69999999987765433222111123566655443

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.25  E-value=0.0011  Score=61.70  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=51.6

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++++..+ +..+++.|+|||+|.|..|..+.+.+.+|+++|.++..++.|++.+..   .+++++++.
T Consensus        20 ~~Iv~~~-~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~   83 (262)
T PF00398_consen   20 DKIVDAL-DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNVEVING   83 (262)
T ss_dssp             HHHHHHH-TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES
T ss_pred             HHHHHhc-CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccceeeec
Confidence            4444433 334789999999999999999998889999999999999999987652   256777765

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.23  E-value=0.0013  Score=61.37  Aligned_cols=61  Identities=15%  Similarity=-0.004  Sum_probs=50.1

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..+...++.+|+|+||+.|..|..+++ +  .++|+|+|.++..++.+++|++.+++ .++++.+
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~  128 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTN  128 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEec
Confidence            344556789999999999999998876 3  36999999999999999999998876 3455543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.22  E-value=0.0013  Score=59.84  Aligned_cols=57  Identities=12%  Similarity=0.064  Sum_probs=44.5

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~  172 (321)
                      .+....+.+.+..+. ..++..++|+|||.|..++++|..|++|+|||++|..++.+.
T Consensus        20 ~~p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255         20 EEVNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF   76 (218)
T ss_pred             CCCCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence            333444445554332 246689999999999999999999999999999999999864

>PRK14967 putative methyltransferase; Provisional

Probab=97.21  E-value=0.002  Score=58.30  Aligned_cols=55  Identities=22%  Similarity=0.185  Sum_probs=46.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .+++.++|+|||.|..+..+++.+. +|+++|.++...+..++|...++.  ++++++
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~   90 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRR   90 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEE
Confidence            4678999999999999999988765 999999999999999999887765  355554

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.17  E-value=0.0029  Score=59.00  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             HHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824          104 VRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       104 ~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +..+.+..|..|.-.+..+.++..+ ...++..|+|||||.|..+..+++ .+++|+++|+++...+..+++..
T Consensus        24 ~e~~~g~~~~~~gg~~~~~~~l~~l-~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~   96 (263)
T PTZ00098         24 YEFIFGEDYISSGGIEATTKILSDI-ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS   96 (263)
T ss_pred             HHHHhCCCCCCCCchHHHHHHHHhC-CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC
Confidence            4555576777776545566666654 445789999999999999888876 57899999999999998887643

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.13  E-value=0.0021  Score=62.75  Aligned_cols=51  Identities=20%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          135 GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ..++|++||.|.+++.+++...+|+++|.++.+++.+++|+..|++. ++++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~  258 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQI  258 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEE
Confidence            57999999999999988876679999999999999999999999863 4444

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.11  E-value=0.0029  Score=60.80  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      ...+...+-.+....++.+++|+|||.|.+.+.++..|.+|+++|.++..++..++|+..+++.
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~  230 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE  230 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            3444444445555567889999999999999888888999999999999999999998877663

This family is found exclusively in the Archaea.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.11  E-value=0.0021  Score=63.21  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=52.1

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +.|....+...-+-++..+- ...++.|+|+|||.|..++.+++.  +.+|+++|.++..++..++|++.|+.
T Consensus       206 gVFs~~~LD~GtrllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~  277 (378)
T PRK15001        206 NVFSRTGLDIGARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP  277 (378)
T ss_pred             CccCCCCcChHHHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence            44544444333333444442 234579999999999999999873  68999999999999999999998864

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.08  E-value=0.0021  Score=68.04  Aligned_cols=64  Identities=17%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC-CceEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG-DLVTVYE  188 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~~~  188 (321)
                      +.++..+.   ++..|+|+|||.|.+++.+++.|+ +|+++|-++..++..++|+++|++. .++++++
T Consensus       530 R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~  595 (702)
T PRK11783        530 RRMIGQMA---KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ  595 (702)
T ss_pred             HHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence            34455444   468999999999999999999876 6999999999999999999999874 3455443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.08  E-value=0.0021  Score=58.22  Aligned_cols=53  Identities=13%  Similarity=-0.020  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~  172 (321)
                      ..+.+++..+.- .++..++|+|||.|..+.++|+.|+.|+++|.+|..++.+.
T Consensus        21 ~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~   73 (213)
T TIGR03840        21 PLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF   73 (213)
T ss_pred             HHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            334445554321 36689999999999999999999999999999999999764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.07  E-value=0.0011  Score=60.79  Aligned_cols=48  Identities=21%  Similarity=0.124  Sum_probs=42.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..|+|||||.|..|..+|+.|++|.++|..+.+++.-+.--..+++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv  106 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV  106 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc
Confidence            679999999999999999999999999999999999998766555554

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.05  E-value=0.0026  Score=61.06  Aligned_cols=59  Identities=15%  Similarity=0.081  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcC--CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824          119 VTIQEILEKMKKE--GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       119 ~~~~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      ..++.++..+...  .++..++|||||.|..+..+++.|++|+++|.++.+++..+++...
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~  188 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKE  188 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            3344445444321  2568999999999999999999999999999999999998887653

>PLN02672 methionine S-methyltransferase

Probab=97.04  E-value=0.01  Score=65.33  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=42.4

Q ss_pred             CCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          134 NGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +..++|+|||.|..++.+++.  .++|+++|-+|..++..++|.+.|++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l  167 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNAL  167 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence            468999999999999998873  47999999999999999999998865

>PRK06202 hypothetical protein; Provisional

Probab=97.04  E-value=0.0045  Score=56.24  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=41.1

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH----cC--CEEEEECCChHHHHHHHHhhh
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV----MG--FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~g--~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .++...+...++..++|||||.|..+..+++    .|  ++|+++|++|...+..+++..
T Consensus        50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence            3343333334678999999999999887764    23  699999999999998877654

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.03  E-value=0.0033  Score=58.85  Aligned_cols=78  Identities=10%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             CCchhHHHHHHHHHHhcC--CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          114 KPDISVTIQEILEKMKKE--GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +|++++.++.+++.+.+.  -++..++|+|||.|..|+.+++  +.++|+|+|-++..+....+|...+++.+++.++|.
T Consensus       127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~  206 (328)
T KOG2904|consen  127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN  206 (328)
T ss_pred             CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence            457777777777665433  3567899999999999999987  469999999999999999999999999889999876


Q ss_pred             eE
Q 020824          190 AV  191 (321)
Q Consensus       190 Al  191 (321)
                      -.
T Consensus       207 ~m  208 (328)
T KOG2904|consen  207 IM  208 (328)
T ss_pred             cc
Confidence            44

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.03  E-value=0.0027  Score=62.60  Aligned_cols=65  Identities=8%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++..+. ...+..++|||||.|.+++.+|+  ++..++++|..+..++.+.+++..+++ .++.+++.
T Consensus       113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~  179 (390)
T PRK14121        113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINY  179 (390)
T ss_pred             HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEC
Confidence            3444443 24567999999999999999987  468999999999999999999888887 46776643

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0027  Score=59.19  Aligned_cols=65  Identities=18%  Similarity=0.140  Sum_probs=51.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +++++... ...+++.|++||+|.|..|..+++.+.+|+|||-|+..++.|++...   ...++++++.
T Consensus        19 ~~kIv~~a-~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~   83 (259)
T COG0030          19 IDKIVEAA-NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVING   83 (259)
T ss_pred             HHHHHHhc-CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeC
Confidence            34444433 23468999999999999999999999999999999999999998764   1246776654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.01  E-value=0.0035  Score=60.38  Aligned_cols=58  Identities=17%  Similarity=0.057  Sum_probs=48.0

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ...++..|+|||||.|+.+..+++. +  ++|+++|.++..++..++++..++. ++++++.
T Consensus        77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~  137 (322)
T PRK13943         77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVC  137 (322)
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEe
Confidence            3456789999999999999999873 3  5799999999999999999887776 4566654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.99  E-value=0.0022  Score=57.64  Aligned_cols=43  Identities=19%  Similarity=0.128  Sum_probs=38.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      +++..|+|||||.|..+..+++.  +.+++++|+++..++..+++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~   86 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY   86 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh
Confidence            46688999999999999988764  68999999999999998765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.014  Score=58.49  Aligned_cols=150  Identities=17%  Similarity=0.084  Sum_probs=96.9

Q ss_pred             cCCCCCCc--hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          109 GKPFRKPD--ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       109 ~~~~~~p~--~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ...|..+.  ..+.+......+++..++++++|.=||+|.+++.+|+...+|+++|-+|+..+..++|.+.|+.. |+++
T Consensus       267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f  345 (432)
T COG2265         267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEF  345 (432)
T ss_pred             CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEE
Confidence            33555443  33334333444454457789999999999999999988899999999999999999999999984 3333


Q ss_pred             EEEeEecCcceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecC--CchHHHHHhh
Q 020824          187 YEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQ--GWEYHVLKGA  264 (321)
Q Consensus       187 ~~~Alsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVE--G~E~~VL~G~  264 (321)
                      .   .++.....                        ...    .           +...+|.+-+|=-  |.+-++++-.
T Consensus       346 ~---~~~ae~~~------------------------~~~----~-----------~~~~~d~VvvDPPR~G~~~~~lk~l  383 (432)
T COG2265         346 I---AGDAEEFT------------------------PAW----W-----------EGYKPDVVVVDPPRAGADREVLKQL  383 (432)
T ss_pred             E---eCCHHHHh------------------------hhc----c-----------ccCCCCEEEECCCCCCCCHHHHHHH
Confidence            1   11111000                        000    0           1124566666653  8888888766


Q ss_pred             HHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCCeEEEEeC
Q 020824          265 TKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYHHCNQHG  313 (321)
Q Consensus       265 ~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G  313 (321)
                      .+.-.     ..++++-.+|.       ++..=...|.+.||++-....
T Consensus       384 ~~~~p-----~~IvYVSCNP~-------TlaRDl~~L~~~gy~i~~v~~  420 (432)
T COG2265         384 AKLKP-----KRIVYVSCNPA-------TLARDLAILASTGYEIERVQP  420 (432)
T ss_pred             HhcCC-----CcEEEEeCCHH-------HHHHHHHHHHhCCeEEEEEEE
Confidence            65311     23577777764       455667788899997655443

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.96  E-value=0.0072  Score=56.09  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ..-++|..+++..+-..+++||...|+-++++++   .+++|+++|.+|+.++.-+++++..++.++|+++
T Consensus        66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~  136 (247)
T PLN02589         66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR  136 (247)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence            3445566665544567999999999999999986   2689999999999999999999877776666543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=96.96  E-value=0.0049  Score=55.35  Aligned_cols=56  Identities=14%  Similarity=-0.021  Sum_probs=44.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++.+++|||||.|.++..+++.+   .+++++|+++...+..+++...++...++++.
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~  108 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV  108 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEE
Confidence            367899999999999999988743   89999999999999998887654443344443

>PHA03411 putative methyltransferase; Provisional

Probab=96.96  E-value=0.01  Score=55.91  Aligned_cols=42  Identities=21%  Similarity=0.078  Sum_probs=36.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      ..+.|+|+|||.|..++.+++.  +.+|+++|.+|.+++..+++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n  107 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL  107 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence            4579999999999999888763  57999999999999988775

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.95  E-value=0.0029  Score=60.93  Aligned_cols=56  Identities=14%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             CCCEEEEECCCCch-HHHHHHH-cCCEEEEECCChHHHHHHHHhhhhc-CCCCceEEEE
Q 020824          133 KNGLVVDVGANVGM-ASFAAAV-MGFRVLSFEPVFENLQRICDGVWFN-RVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~-~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~~~  188 (321)
                      ++..++|||+|.|. +.+.+++ .+++++|+|-+|..++..++|++.| ++.+++++..
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~  172 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRL  172 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEE
Confidence            56899999999985 4555544 5899999999999999999999999 7877888764

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.95  E-value=0.0043  Score=60.24  Aligned_cols=70  Identities=21%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +.|..+.....-+.++..+.. ...+.++|+|||.|..+..+++.  +.+|+++|.++..++..++|++.|++
T Consensus       174 gvFs~~~lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l  245 (342)
T PRK09489        174 GVFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL  245 (342)
T ss_pred             CCCCCCCCCHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            455555444333344444432 34568999999999999999874  47999999999999999999998876

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.94  E-value=0.0049  Score=56.16  Aligned_cols=65  Identities=14%  Similarity=0.180  Sum_probs=54.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--c-CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV--M-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      -.+|..+++......+++||...|+-++|+|.  + .++++++|.+|+.++..++|++.-++.++|++
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~  115 (219)
T COG4122          48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL  115 (219)
T ss_pred             HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence            35566666656779999999999999999997  3 58999999999999999999998887655544

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.94  E-value=0.0034  Score=62.85  Aligned_cols=63  Identities=13%  Similarity=0.033  Sum_probs=51.3

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++...++..++..|+|+||+.|..++.+++ .  +++|+++|.++..++.+++|++.+++. ++++.
T Consensus       241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~  306 (444)
T PRK14902        241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETK  306 (444)
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence            444455556789999999999999999886 3  479999999999999999999888763 35443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.0043  Score=58.57  Aligned_cols=161  Identities=18%  Similarity=0.211  Sum_probs=91.5

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe-
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA-  190 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A-  190 (321)
                      +|+++..++.++....... . .++|+|+|.|..++.+++..  ++|+|+|-+|...+..++|...|++ .++..+..- 
T Consensus        93 r~dTe~Lve~~l~~~~~~~-~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dl  169 (280)
T COG2890          93 RPDTELLVEAALALLLQLD-K-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDL  169 (280)
T ss_pred             CCchHHHHHHHHHhhhhcC-C-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeec
Confidence            3566665555553332222 2 79999999999999998743  7999999999999999999999987 455544442 


Q ss_pred             EecCcceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhh
Q 020824          191 VSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSR  270 (321)
Q Consensus       191 lsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~  270 (321)
                      ...-.|+..+-+..  +  ..++..                .....++.. .+++...+--+-.|  +++.+...+...+
T Consensus       170 f~~~~~~fDlIVsN--P--PYip~~----------------~~~~~~~~~-~~EP~~Al~~g~dG--l~~~~~i~~~a~~  226 (280)
T COG2890         170 FEPLRGKFDLIVSN--P--PYIPAE----------------DPELLPEVV-RYEPLLALVGGGDG--LEVYRRILGEAPD  226 (280)
T ss_pred             ccccCCceeEEEeC--C--CCCCCc----------------ccccChhhh-ccCHHHHHccCccH--HHHHHHHHHhhHH
Confidence            22234444433311  0  111100                000111111 12222333333333  3344444443333


Q ss_pred             hcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCC-Ce
Q 020824          271 KKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVG-YH  307 (321)
Q Consensus       271 ~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~G-Y~  307 (321)
                      .....-.+++|...       ....++.+.+.+.| |.
T Consensus       227 ~l~~~g~l~le~g~-------~q~~~v~~~~~~~~~~~  257 (280)
T COG2890         227 ILKPGGVLILEIGL-------TQGEAVKALFEDTGFFE  257 (280)
T ss_pred             HcCCCcEEEEEECC-------CcHHHHHHHHHhcCCce
Confidence            32112378999864       34568999999999 55

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.93  E-value=0.0032  Score=57.78  Aligned_cols=44  Identities=20%  Similarity=0.065  Sum_probs=38.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .+...|+|+|||.|..+..+++.|.+|+++|.+|...+..+++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC
Confidence            35689999999999999988888999999999999998887653

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.93  E-value=0.0063  Score=56.67  Aligned_cols=49  Identities=16%  Similarity=0.145  Sum_probs=40.1

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhh
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~  175 (321)
                      .+....++..++|||||.|.++..+++. +  ++|+++|+++.+.+..++..
T Consensus        67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~  118 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ  118 (261)
T ss_pred             HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence            3444457899999999999999988763 3  79999999999999887654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.0082  Score=57.01  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=53.8

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      .|....+...-+-+++.+-. ..+..++|+|||.|..++.+++.  ..++..+|-|...++.-++|++.|+..
T Consensus       137 VFS~~~lD~GS~lLl~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~  208 (300)
T COG2813         137 VFSRDKLDKGSRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE  208 (300)
T ss_pred             CCcCCCcChHHHHHHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence            34433333334445555543 44569999999999999999983  589999999999999999999999874

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.92  E-value=0.0022  Score=55.85  Aligned_cols=56  Identities=20%  Similarity=0.058  Sum_probs=46.9

Q ss_pred             CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          135 GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .+++|+-||.|-.++.||+...+|+|+|-+|..++.++.|.+..++.++|.+++.=
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD   56 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGD   56 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCC
Confidence            37999999999999999999899999999999999999999998887788876653

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.89  E-value=0.0039  Score=62.30  Aligned_cols=65  Identities=9%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++...+...++..|+|+||+.|..|+.+++ +  .++|+|+|.++...+.+++|+..+++. ++++.+
T Consensus       242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~  309 (434)
T PRK14901        242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILA  309 (434)
T ss_pred             HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEe
Confidence            3444455666789999999999999998886 3  379999999999999999999988763 455543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.88  E-value=0.0052  Score=58.27  Aligned_cols=62  Identities=15%  Similarity=0.056  Sum_probs=49.6

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+..++..++|||||.|.++..+++  ++.+++++|. |...+..+++++..++.++++++..
T Consensus       143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~  206 (306)
T TIGR02716       143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV  206 (306)
T ss_pred             HHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEec
Confidence            334445678999999999999998887  4689999996 8888998888887777666766554

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.88  E-value=0.0026  Score=61.98  Aligned_cols=147  Identities=17%  Similarity=0.172  Sum_probs=83.9

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeec
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLV  204 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~  204 (321)
                      ...+++..++ .++|+=||+|.+|+.+|+...+|+++|-++.+++..++|..+|++ ++++++...+.+-...+      
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~------  260 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL------  260 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH------
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH------
Confidence            3344443333 799999999999999999889999999999999999999999998 46666543332211100      


Q ss_pred             CCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEec--CCchHHHHHhhHHhhhhhcCCCCEEEEEE
Q 020824          205 GRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDV--QGWEYHVLKGATKLLSRKKGESPYLIYEE  282 (321)
Q Consensus       205 ~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDV--EG~E~~VL~G~~~~L~~~k~~~p~IiiE~  282 (321)
                         ...        -.+            ..+..+-.....+|.+-+|=  .|.+..+++-.    .+.   ..+|++-.
T Consensus       261 ---~~~--------r~~------------~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~----~~~---~~ivYvSC  310 (352)
T PF05958_consen  261 ---AKA--------REF------------NRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI----KKL---KRIVYVSC  310 (352)
T ss_dssp             ---CCS---------GG------------TTGGGS-GGCTTESEEEE---TT-SCHHHHHHH----HHS---SEEEEEES
T ss_pred             ---Hhh--------HHH------------HhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH----hcC---CeEEEEEC
Confidence               000        000            01122111112456666665  48887777633    333   24678888


Q ss_pred             cccchhhcCCCHHHHHHHHHcCCCeEEEEeCCccc
Q 020824          283 DEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAH  317 (321)
Q Consensus       283 ~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~  317 (321)
                      +|..+.      .|+. .|.+ ||++....+-|.|
T Consensus       311 nP~tla------RDl~-~L~~-~y~~~~v~~~DmF  337 (352)
T PF05958_consen  311 NPATLA------RDLK-ILKE-GYKLEKVQPVDMF  337 (352)
T ss_dssp             -HHHHH------HHHH-HHHC-CEEEEEEEEE-SS
T ss_pred             CHHHHH------HHHH-HHhh-cCEEEEEEEeecC
Confidence            775433      3454 4544 9998776665554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.87  E-value=0.0055  Score=56.89  Aligned_cols=61  Identities=18%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..+|++|++.|.|.|..|..+++   +.++|+.||-..+.++..++|++.+++.+++++.+
T Consensus        35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~   98 (247)
T PF08704_consen   35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH   98 (247)
T ss_dssp             HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred             HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence            34456899999999999999999997   34899999999999999999999888765566544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.87  E-value=0.0063  Score=56.33  Aligned_cols=73  Identities=19%  Similarity=0.152  Sum_probs=52.4

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      |+.+..++.++.. ....++..++|+|||.|..+..+++.  ..+|+++|.++..++..++|.. +....++++++.
T Consensus        91 ~~te~l~~~~~~~-~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~  165 (275)
T PRK09328         91 PETEELVEWALEA-LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG  165 (275)
T ss_pred             CCcHHHHHHHHHh-ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEc
Confidence            4444433443322 22346689999999999999998873  5899999999999999999987 333345666554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.87  E-value=0.0034  Score=52.89  Aligned_cols=45  Identities=24%  Similarity=0.155  Sum_probs=38.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHH------cCCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAV------MGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~------~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .+...+||+|||.|+.+..++.      .+.+|+++|-++...+...+...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence            5779999999999999998877      47899999999998877766544

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.86  E-value=0.0038  Score=61.51  Aligned_cols=54  Identities=17%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             CCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          134 NGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +.+++|++||.|..++.+++ .+ .+|+++|-+|..++.+++|+++|++. ++++++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~  113 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFN  113 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEh
Confidence            46899999999999999986 44 48999999999999999999999874 444433

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.85  E-value=0.0025  Score=48.29  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=34.0

Q ss_pred             EEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhh
Q 020824          138 VDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       138 vDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +|+|||.|.++..+++. +.+|+++|+++...+..++...
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~   40 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK   40 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc
Confidence            79999999999999987 8999999999999999988755

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK04148 hypothetical protein; Provisional

Probab=96.81  E-value=0.0053  Score=51.76  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCch-HHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGM-ASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~-~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      +.++|.......++..++|||+|.|. .+..+++.|..|+|+|-+|...+..+++
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            44455555544466889999999997 8888888999999999999988777654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.80  E-value=0.0036  Score=57.60  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=38.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .++..++|||||.|.++..+++  .+.+|+++|+++..++..+++.
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~   75 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL   75 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC
Confidence            4678999999999999998886  3689999999999999887653

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.79  E-value=0.0061  Score=61.15  Aligned_cols=63  Identities=16%  Similarity=0.089  Sum_probs=50.2

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ...++...++..|+|+|||.|..|..+++ .  +++|+++|.++..++.+++|+..+++ ++++++.
T Consensus       242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~  307 (445)
T PRK14904        242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIE  307 (445)
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEe
Confidence            33445556789999999999999988876 3  47999999999999999999987776 3455543

>PRK04457 spermidine synthase; Provisional

Probab=96.77  E-value=0.007  Score=56.53  Aligned_cols=56  Identities=11%  Similarity=0.012  Sum_probs=45.2

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++...++|||+|.|..+.++++  ++.+|+++|.+|..++..++++..++..++++++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~  122 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVI  122 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEE
Confidence            4557899999999999998876  4689999999999999999887665433455554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.72  E-value=0.0075  Score=56.04  Aligned_cols=55  Identities=22%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++.+|+|||||.|..++.+++ .|  ++|+++|+++...+..+++...++. +++++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~  133 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFR  133 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEE
Confidence            5789999999999999887775 34  6899999999999999998876665 355443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.71  E-value=0.0065  Score=60.55  Aligned_cols=58  Identities=10%  Similarity=0.067  Sum_probs=49.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c-CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV-M-GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~-g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++...+...++.+|+|+||+.|..|..+++ . +++|+|+|.++..++.+++|++.+++
T Consensus       228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~  287 (426)
T TIGR00563       228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL  287 (426)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            3455556666889999999999999999987 4 48999999999999999999987765

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.68  E-value=0.005  Score=56.49  Aligned_cols=50  Identities=28%  Similarity=0.394  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHH
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQR  170 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~  170 (321)
                      +..++..+--.-++.+++|+||+.|.+|..+++.| .+|+|+|.++..+..
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            34445444222367899999999999999999987 589999999965543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK08317 hypothetical protein; Provisional

Probab=96.64  E-value=0.015  Score=51.84  Aligned_cols=47  Identities=19%  Similarity=0.120  Sum_probs=39.6

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHh
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      .+...++..|+|+|||.|.++..+++ .  +++|+++|+++...+..+++
T Consensus        14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            34445788999999999999998876 3  47999999999999888776

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=96.62  E-value=0.0075  Score=54.15  Aligned_cols=54  Identities=11%  Similarity=0.094  Sum_probs=45.1

Q ss_pred             EEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          136 LVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       136 ~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .|+|||||.|.++..+++.  +.+|+++|.++...+..++++...++.+++++...
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~   57 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYR   57 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEec
Confidence            5899999999999988873  58999999999999999998877666666666554

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.59  E-value=0.011  Score=51.70  Aligned_cols=47  Identities=23%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++..|+++|||.|..++.+++.  +.+|++=|-++ ..+.++.|++.|+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~   92 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG   92 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc
Confidence            47799999999999999999997  57999999888 9999999999986

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=96.59  E-value=0.015  Score=52.60  Aligned_cols=56  Identities=20%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      ++.......++..++|||||.|..+..+++.+.+|+++|+++...+..+++...++
T Consensus        39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~   94 (233)
T PRK05134         39 YIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG   94 (233)
T ss_pred             HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC
Confidence            34444433467899999999999999888888999999999999998888776544

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.56  E-value=0.012  Score=56.01  Aligned_cols=73  Identities=16%  Similarity=0.110  Sum_probs=53.8

Q ss_pred             CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.|.+   +++++..+. ..+++++||+++|.|.+|..+++.   .++|+|||-+|..++..++.+..   .+++++++.
T Consensus         3 H~pVl---l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~   75 (296)
T PRK00050          3 HIPVL---LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHG   75 (296)
T ss_pred             Ccccc---HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeC
Confidence            34555   344555543 346789999999999999999873   38999999999999998877542   256777666


Q ss_pred             eEe
Q 020824          190 AVS  192 (321)
Q Consensus       190 Als  192 (321)
                      -..
T Consensus        76 ~f~   78 (296)
T PRK00050         76 NFS   78 (296)
T ss_pred             CHH
Confidence            443

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.55  E-value=0.0057  Score=56.41  Aligned_cols=50  Identities=18%  Similarity=0.222  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHH
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~  173 (321)
                      .++..+ ...++..|+|||||.|.++..+++.  +++|+++|+++...+..++
T Consensus        20 ~ll~~l-~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         20 DLLARV-GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE   71 (255)
T ss_pred             HHHHhC-CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence            444443 2346789999999999999988874  7899999999998887754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.55  E-value=0.011  Score=59.01  Aligned_cols=56  Identities=13%  Similarity=0.096  Sum_probs=47.4

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ....+...++..|+|+|||.|..++.+++.  +++|+++|.++..++.+++|...+++
T Consensus       236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~  293 (427)
T PRK10901        236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL  293 (427)
T ss_pred             HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            333455568899999999999999998874  37999999999999999999987765

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=96.55  E-value=0.0069  Score=55.66  Aligned_cols=58  Identities=12%  Similarity=0.030  Sum_probs=40.5

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ...++..|+|+|||.|..+..+++ .  +++|+++|+++.+.+..++.....+. .+++++.
T Consensus        44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~  104 (233)
T PF01209_consen   44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQ  104 (233)
T ss_dssp             T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEE
Confidence            335788999999999999998876 3  47999999999999999988876554 3566654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=96.52  E-value=0.017  Score=51.71  Aligned_cols=48  Identities=23%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .+.+++|+|||.|.++..+++.+.+++++|+++..++..+++...++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~   92 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL   92 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            478999999999999998888888999999999999998888775543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.51  E-value=0.0087  Score=60.23  Aligned_cols=60  Identities=15%  Similarity=0.085  Sum_probs=44.0

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .+...++..++|||||.|.++..+++.+.+|+++|+++.+++..++   .++..++++++..-
T Consensus        32 ~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d   91 (475)
T PLN02336         32 LLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCAD   91 (475)
T ss_pred             hcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEec
Confidence            3333456899999999999999999888899999999998876432   33322455554443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.50  E-value=0.01  Score=59.30  Aligned_cols=57  Identities=19%  Similarity=0.087  Sum_probs=48.3

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..+++..++..|+|+||+.|.-|+.++. +  +++|+|+|.++..++.+++|++..++
T Consensus       228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~  287 (431)
T PRK14903        228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL  287 (431)
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            444455666889999999999999998886 3  58999999999999999999887765

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.48  E-value=0.011  Score=58.32  Aligned_cols=47  Identities=19%  Similarity=0.105  Sum_probs=41.1

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhh
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +...++..++|||||.|..+..+++ .|++|+++|.++..++..+++.
T Consensus       163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~  210 (383)
T PRK11705        163 LQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC  210 (383)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            3345788999999999999998887 5899999999999999988775

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.47  E-value=0.021  Score=57.45  Aligned_cols=54  Identities=19%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +.++..+. ..++..|+|||||.|..+..+++ .|++|+++|+++..++..+++..
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~  310 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI  310 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh
Confidence            34444432 35678999999999999988886 58899999999999988877653

>PRK05785 hypothetical protein; Provisional

Probab=96.45  E-value=0.0093  Score=54.39  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             CCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~  173 (321)
                      ++..++|||||.|..+..+++. +++|+++|+++.+.+..++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~   92 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV   92 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh
Confidence            4689999999999999998886 6899999999999887653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.38  E-value=0.012  Score=44.14  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             EEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHh
Q 020824          136 LVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       136 ~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n  174 (321)
                      +++|+|||.|..+..+++ .+.+++++|+++...+..++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   40 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA   40 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence            479999999999998887 568999999999999888753

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.28  E-value=0.013  Score=52.33  Aligned_cols=56  Identities=13%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +..++||||||.|.+.+.+|+  ++..++++|.....+....+.+...++ +|+.+++.
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~   74 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRG   74 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEc
Confidence            345999999999999999986  679999999999999998888887777 67888775

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.23  E-value=0.025  Score=53.08  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .+.+++++||-|.|..|..+...|.+|+|+|-+|.++..|.+.++--..+++.+++..
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~g  114 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHG  114 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEec
Confidence            4789999999999999999999999999999999999999987763332344444443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.22  E-value=0.035  Score=51.27  Aligned_cols=52  Identities=17%  Similarity=0.104  Sum_probs=43.0

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +-.....++|..++|||||.|..++.+++. | ++|+++|.++.+.+.-++...
T Consensus        43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~   96 (238)
T COG2226          43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK   96 (238)
T ss_pred             HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh
Confidence            333443347899999999999999999984 3 899999999999999887655

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=96.13  E-value=0.022  Score=53.14  Aligned_cols=56  Identities=13%  Similarity=0.192  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-----CCEEEEECCChHHHHHHHHh
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-----GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-----g~~ViafEP~p~~~~~L~~n  174 (321)
                      .+.+.+.+...+. .+...++|||||.|.++..+++.     ++.|+++|+++..++..+++
T Consensus        71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~  131 (272)
T PRK11088         71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR  131 (272)
T ss_pred             HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh
Confidence            3334444554443 24578999999999999888752     24899999999999887654

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.07  E-value=0.038  Score=54.38  Aligned_cols=54  Identities=19%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             CEEEEECCCCchHHHHHHHc--C-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          135 GLVVDVGANVGMASFAAAVM--G-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~~--g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      -.++|..||.|..++.+++.  | .+|+++|-||..++.+++|+++|+.. ++++.+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~  102 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNE  102 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEch
Confidence            58999999999999999874  5 58999999999999999999999873 4555544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.06  E-value=0.024  Score=50.18  Aligned_cols=48  Identities=19%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..|+|+=||.|...+.+...| .+|+.+|-++..++.+++|++.-+.
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~   90 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL   90 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence            68999999999999999999888 4899999999999999999886554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=96.05  E-value=0.042  Score=48.70  Aligned_cols=45  Identities=20%  Similarity=0.016  Sum_probs=38.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .++..++|+|||.|.++..+++. +  .+++++|+++...+..+++..
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~   85 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE   85 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence            46789999999999999988874 3  599999999999998887654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.01  E-value=0.023  Score=51.24  Aligned_cols=34  Identities=29%  Similarity=0.154  Sum_probs=29.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCCh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVF  165 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p  165 (321)
                      .++..|+|||||.|.++..+++.   +++|+++|++|
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            46789999999999999988873   37999999998

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=95.96  E-value=0.022  Score=50.35  Aligned_cols=40  Identities=15%  Similarity=0.044  Sum_probs=34.5

Q ss_pred             CCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~  172 (321)
                      ++++++|||||.|.++..+++ .+.+++++|+++.+++..+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~   53 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV   53 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH
Confidence            568999999999999988875 4678999999999887764

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.92  E-value=0.0033  Score=59.46  Aligned_cols=55  Identities=18%  Similarity=0.148  Sum_probs=45.9

Q ss_pred             CCCCEEEEECCCCchHHHHHH-HcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAA-VMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a-~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ..+.+++|+=||+||||+.+. +.|+ .|+|+|=||...+.|++|.+.|+...+..+
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i  249 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRI  249 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHh
Confidence            466999999999999999554 5675 699999999999999999999977444333

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=95.87  E-value=0.022  Score=44.69  Aligned_cols=51  Identities=24%  Similarity=0.197  Sum_probs=37.9

Q ss_pred             EEEECCCCchHHHHHHHc---C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          137 VVDVGANVGMASFAAAVM---G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       137 vvDIGAn~G~~sl~~a~~---g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      |+|+|||.|.++..+++.   |  .+++++|.++++.+..+++....+.  +++++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~   56 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQA   56 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEES
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEEC
Confidence            699999999999988864   4  8999999999999999988765433  4555433

>PRK06922 hypothetical protein; Provisional

Probab=95.85  E-value=0.04  Score=57.66  Aligned_cols=47  Identities=17%  Similarity=0.075  Sum_probs=40.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhc
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      .++++++|||||.|..+..+++  ++.+|+++|.++.+++..+++...+
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~  465 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE  465 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc
Confidence            3678999999999999887775  5789999999999999998876544

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=95.82  E-value=0.011  Score=55.05  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             CCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          134 NGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      |..|+|||||-|..|..+|+.|+.|.++|+.+.+++..++....+..
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~  136 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPV  136 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCch
Confidence            36699999999999999999999999999999999998877555544

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.77  E-value=0.028  Score=53.56  Aligned_cols=56  Identities=13%  Similarity=0.165  Sum_probs=43.4

Q ss_pred             CCEEEEECCCCc-hHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhc-CCCCceEEEEE
Q 020824          134 NGLVVDVGANVG-MASFAAAV-MGFRVLSFEPVFENLQRICDGVWFN-RVGDLVTVYEA  189 (321)
Q Consensus       134 ~~~vvDIGAn~G-~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~~~~  189 (321)
                      .-+.+|||.|.. .|.++.++ .||+++|-|-++..++..++|++.| +++++|++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~  161 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ  161 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence            468999999876 57888877 6999999999999999999999999 99899999765

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.74  E-value=0.041  Score=51.10  Aligned_cols=123  Identities=17%  Similarity=0.158  Sum_probs=81.0

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecC
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVG  205 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~  205 (321)
                      ..-.++.+|+|.|.|.|..|.++++ .|  ++|+.||-..+.++..++|+..-++.++++...       |         
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-------~---------  153 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL-------G---------  153 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe-------c---------
Confidence            3446899999999999999999997 33  899999999999999999988655544333322       0         


Q ss_pred             CCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEccc
Q 020824          206 RLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEH  285 (321)
Q Consensus       206 ~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~  285 (321)
                      +..                            +.+..  ..+|.+-+|+. .-+++|..+.+.|...     -.++-+.|.
T Consensus       154 Dv~----------------------------~~~~~--~~vDav~LDmp-~PW~~le~~~~~Lkpg-----g~~~~y~P~  197 (256)
T COG2519         154 DVR----------------------------EGIDE--EDVDAVFLDLP-DPWNVLEHVSDALKPG-----GVVVVYSPT  197 (256)
T ss_pred             ccc----------------------------ccccc--cccCEEEEcCC-ChHHHHHHHHHHhCCC-----cEEEEEcCC
Confidence            000                            00000  13455555554 3467888888887664     334444443


Q ss_pred             chhhcCCCHHHHHHHHHcCCCeE
Q 020824          286 LLQASNSSAKEIREFLHSVGYHH  308 (321)
Q Consensus       286 ~~~~~~~~~~ei~~~L~~~GY~~  308 (321)
                      .     ...+.+..-|++.||.-
T Consensus       198 v-----eQv~kt~~~l~~~g~~~  215 (256)
T COG2519         198 V-----EQVEKTVEALRERGFVD  215 (256)
T ss_pred             H-----HHHHHHHHHHHhcCccc
Confidence            2     23566777788888863

>TIGR03438 probable methyltransferase

Probab=95.70  E-value=0.09  Score=49.98  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=39.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +++..+||+|||.|..+..+++.   +.+|+++|-++++.+..++++..
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~  110 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA  110 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence            45689999999999999988763   68999999999999888877653

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.68  E-value=0.028  Score=49.39  Aligned_cols=43  Identities=26%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChH
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFE  166 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~  166 (321)
                      +...+....++..++|+|||.|.++..+++.   .++|+++|++|.
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            3333434457899999999999999888752   368999999985

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.67  E-value=0.036  Score=50.47  Aligned_cols=61  Identities=16%  Similarity=0.239  Sum_probs=47.7

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~  172 (321)
                      .|...+....+++++..+ ...++..+++.|||.|....++|..|++|+++|-++..++.+.
T Consensus        16 ~w~~~~~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~   76 (218)
T PF05724_consen   16 PWDQGEPNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF   76 (218)
T ss_dssp             TT--TTSTHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH
Confidence            455555556667777763 3356789999999999999999999999999999999999974

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.44  E-value=0.029  Score=48.09  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=57.6

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      |++...+...++.-...=+|..+.|+||+.|..+..++..+ ..|++||-+|+..+...+|.+.-.+  ++.++++-+-+
T Consensus        30 p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdild  107 (185)
T KOG3420|consen   30 PHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILD  107 (185)
T ss_pred             HHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccc
Confidence            45555565666666543478999999999999997777765 5799999999999999988764333  45666665544

>PLN03075 nicotianamine synthase; Provisional

Probab=95.43  E-value=0.1  Score=49.80  Aligned_cols=63  Identities=13%  Similarity=-0.047  Sum_probs=44.2

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCc-hHHHHHHH---cCCEEEEECCChHHHHHHHHhhhh-cCCCCceEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVG-MASFAAAV---MGFRVLSFEPVFENLQRICDGVWF-NRVGDLVTV  186 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G-~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~l-N~~~~~v~~  186 (321)
                      ++|..+... +...|+|||||.| +.++.+++   ++++++.||-+|+..+.-++++.. .++.+++++
T Consensus       114 ~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F  181 (296)
T PLN03075        114 DLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFF  181 (296)
T ss_pred             HHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEE
Confidence            344444433 5689999999965 44555553   468999999999999999888743 444444444

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=95.38  E-value=0.069  Score=51.90  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .++..|+|||||.|..+..+++  .+.+|+++|+++...+..+++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~  157 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE  157 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh
Confidence            3568999999999999988876  3579999999999999887764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=95.37  E-value=0.06  Score=48.08  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=36.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhh
Q 020824          133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +...|+|||||.|.++..+++.  ..+++++|+++...+..++..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~   78 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL   78 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc
Confidence            3478999999999999988874  468999999999988877653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.36  E-value=0.13  Score=47.11  Aligned_cols=62  Identities=8%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~  173 (321)
                      .|...+....+.+.+..+. .+++..|++.|||-|....++|..|++|+++|-++..++.+.+
T Consensus        22 ~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~   83 (226)
T PRK13256         22 GFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS   83 (226)
T ss_pred             CCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence            4555555555555555543 2356899999999999999999999999999999999998854

>PRK03612 spermidine synthase; Provisional

Probab=95.35  E-value=0.27  Score=50.48  Aligned_cols=45  Identities=11%  Similarity=-0.065  Sum_probs=38.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++...|+|||+|.|..+..+++. + .+|+++|.||+..+..+++..
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~  342 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA  342 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCc
Confidence            45678999999999999888874 4 699999999999999987543

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.30  E-value=0.078  Score=48.55  Aligned_cols=65  Identities=18%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ++..+++.-....++|||...|+-.+..|.   .+++|+++|-|+.+++.-.+-++..+...+|++.+
T Consensus        64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~  131 (237)
T KOG1663|consen   64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE  131 (237)
T ss_pred             HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence            333333333458999999999999988886   37999999999999999988888777665555543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.26  E-value=0.054  Score=52.57  Aligned_cols=96  Identities=19%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcc
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSA  211 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~  211 (321)
                      .++.+++|+||.-|-||..+.+.|++|+|||..| ..+.|..    +   ++|+              .....       
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~----~---~~V~--------------h~~~d-------  260 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMD----T---GQVE--------------HLRAD-------  260 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhC----C---CCEE--------------EEecc-------
Confidence            4789999999999999999999999999999554 2222211    1   2222              22210       


Q ss_pred             ccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEE
Q 020824          212 VSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEE  282 (321)
Q Consensus       212 l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~  282 (321)
                          +  ..+         .+     .    .+.+|++-+|+-=.=..+.+=+.++|.+..+  ...++-.
T Consensus       261 ----~--fr~---------~p-----~----~~~vDwvVcDmve~P~rva~lm~~Wl~~g~c--r~aIfnL  305 (357)
T PRK11760        261 ----G--FKF---------RP-----P----RKNVDWLVCDMVEKPARVAELMAQWLVNGWC--REAIFNL  305 (357)
T ss_pred             ----C--ccc---------CC-----C----CCCCCEEEEecccCHHHHHHHHHHHHhcCcc--cEEEEEE
Confidence                0  000         00     0    2478999999998888999999999887654  3444444

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.19  E-value=0.067  Score=48.28  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCC-EEEEECCChHHHHHHHHh
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGF-RVLSFEPVFENLQRICDG  174 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~n  174 (321)
                      .+..+++. ++.+++++|+|+|+|+|...+.+|. .++ +++++|-.|..++.-+..
T Consensus        30 ~~~~il~~-~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~   85 (205)
T PF08123_consen   30 FVSKILDE-LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEEL   85 (205)
T ss_dssp             HHHHHHHH-TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHH
T ss_pred             HHHHHHHH-hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHH
Confidence            35566654 4456899999999999999888875 575 599999999877665543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=95.04  E-value=0.079  Score=48.82  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE--EEEeEecCcceEEEEeecCC
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV--YEAAVSDRIGNITFHKLVGR  206 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~--~~~Alsd~~g~~~~~~~~~~  206 (321)
                      +..++.+|+|.-.|.|++++.+++.|+ +|+.||-||...+.-.    +|.+..+..-  +..-+||....+        
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~----lNPwSr~l~~~~i~iilGD~~e~V--------  198 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK----LNPWSRELFEIAIKIILGDAYEVV--------  198 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeec----cCCCCccccccccEEecccHHHHH--------
Confidence            334789999999999999999999998 9999999998777643    5666421111  111111111100        


Q ss_pred             CCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccc
Q 020824          207 LDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHL  286 (321)
Q Consensus       207 ~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~  286 (321)
                            .                .++--++|.++.+  +|.|=+- .|=+-.+.-+-..+.|++.   -....+--.|..
T Consensus       199 ------~----------------~~~D~sfDaIiHD--PPRfS~A-geLYseefY~El~RiLkrg---GrlFHYvG~Pg~  250 (287)
T COG2521         199 ------K----------------DFDDESFDAIIHD--PPRFSLA-GELYSEEFYRELYRILKRG---GRLFHYVGNPGK  250 (287)
T ss_pred             ------h----------------cCCccccceEeeC--CCccchh-hhHhHHHHHHHHHHHcCcC---CcEEEEeCCCCc
Confidence                  0                0111135666643  3444333 2666666677777777765   345666666666


Q ss_pred             hhhcCCCHHHHHHHHHcCCCeEEEEeC
Q 020824          287 LQASNSSAKEIREFLHSVGYHHCNQHG  313 (321)
Q Consensus       287 ~~~~~~~~~ei~~~L~~~GY~~~~~~G  313 (321)
                      .+++......+.+.|++.||+......
T Consensus       251 ryrG~d~~~gVa~RLr~vGF~~v~~~~  277 (287)
T COG2521         251 RYRGLDLPKGVAERLRRVGFEVVKKVR  277 (287)
T ss_pred             ccccCChhHHHHHHHHhcCceeeeeeh
Confidence            666666788999999999999765443

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=94.99  E-value=0.074  Score=47.50  Aligned_cols=48  Identities=15%  Similarity=0.042  Sum_probs=38.7

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~  173 (321)
                      ++..++  .++..|+|+|||.|..-.++.+ ++.+++++|-+++.+....+
T Consensus         6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~   54 (193)
T PF07021_consen    6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA   54 (193)
T ss_pred             HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence            344455  4679999999999998777765 78999999999998777653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.78  E-value=0.0055  Score=47.73  Aligned_cols=42  Identities=17%  Similarity=0.041  Sum_probs=33.0

Q ss_pred             EEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          138 VDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       138 vDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      +|||||.|..+..+...  +.+++++|++|.+++..++.+....
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~   44 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG   44 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence            69999999998888764  7899999999999977666655443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=94.74  E-value=0.23  Score=47.15  Aligned_cols=57  Identities=23%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +.++....   ++..|+|+=|+.|.+|+.+++.|+ +|+++|.+....+..++|+++|++.
T Consensus       115 R~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~  172 (286)
T PF10672_consen  115 RKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD  172 (286)
T ss_dssp             HHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            44555554   568999999999999999998885 7999999999999999999999874

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=94.47  E-value=0.16  Score=50.35  Aligned_cols=56  Identities=20%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      ..+....   +|..|+|+=|+.|.+|+.+|.-|+ +|+++|.+....++.++|+++|++.
T Consensus       210 ~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~  266 (393)
T COG1092         210 RALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD  266 (393)
T ss_pred             HHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC
Confidence            3444444   479999999999999999999998 9999999999999999999999984

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=94.43  E-value=0.066  Score=49.56  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=39.1

Q ss_pred             CCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhh
Q 020824          133 KNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ....++|||||.|..|+.+|+ -| -.|+++|-+|..++..++++.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            457899999999999999998 46 479999999999999998865

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.41  E-value=0.18  Score=46.31  Aligned_cols=53  Identities=11%  Similarity=0.082  Sum_probs=41.8

Q ss_pred             CCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          134 NGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ..+++|||+|-|.+.+.+|+  +...++++|.-...+..+.+.+...++ +|+.++
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-~Nlri~  103 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-KNLRLL  103 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-CcEEEE
Confidence            46999999999999999997  568999999998877777766665554 244443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=94.29  E-value=0.13  Score=46.33  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             EEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          137 VVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       137 vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +.||||-.|+..+++.+.|  -+|+|.|-++.-++..+++++.+++.+++++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~   52 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEV   52 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEE
Confidence            6899999999999999977  4899999999999999999998887665554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=94.28  E-value=0.077  Score=53.70  Aligned_cols=67  Identities=15%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +.+-.++...+..+.+.+++|+=||.|.+++..|+.-.+|+++|-+|+.++-.+.|...|++. |.++
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~F  435 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATF  435 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceee
Confidence            344566777777788899999999999999999997789999999999999999999999874 4444

>PHA03412 putative methyltransferase; Provisional

Probab=94.25  E-value=0.064  Score=49.54  Aligned_cols=43  Identities=28%  Similarity=0.209  Sum_probs=37.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHc-----CCEEEEECCChHHHHHHHHhh
Q 020824          133 KNGLVVDVGANVGMASFAAAVM-----GFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~-----g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .+..|+|+|||.|..++.+++.     ..+|+++|-++..++..++|+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~   96 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV   96 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence            4689999999999999988762     368999999999999998774

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=94.13  E-value=0.12  Score=46.49  Aligned_cols=69  Identities=17%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      +.++...+..+.-..++|+||++|.+|..++....++.++|-++..++..++.++  +. ++|++....+.+
T Consensus        32 ~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~-~~V~~~~~dvp~  100 (201)
T PF05401_consen   32 RATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GL-PHVEWIQADVPE  100 (201)
T ss_dssp             HHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T--SSEEEEES-TTT
T ss_pred             HHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CC-CCeEEEECcCCC
Confidence            3445433444566889999999999999999887899999999999999987765  33 578777776644

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK10742 putative methyltransferase; Provisional

Probab=94.08  E-value=0.24  Score=46.01  Aligned_cols=50  Identities=26%  Similarity=0.153  Sum_probs=43.7

Q ss_pred             HhcCCCCC--EEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824          128 MKKEGKNG--LVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       128 ~~~~~~~~--~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .+...++.  +|+|.=||.|..++.++..|++|+++|-+|..+..+++|++.
T Consensus        81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             HhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence            33333445  999999999999999999999999999999999999999875

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=93.95  E-value=0.084  Score=45.92  Aligned_cols=35  Identities=31%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChH
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFE  166 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~  166 (321)
                      +++.+++|+||.-|-||-.+.+.+   ++|+|+|..|.
T Consensus        22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             ccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            366999999999999999999865   89999999987

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.87  E-value=2.3  Score=38.91  Aligned_cols=52  Identities=15%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             CEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          135 GLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ..+.|||+-.++...++-+.+  -.++|.|-++.-++.-.+|+..|++.+++++
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~v   71 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDV   71 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEE
Confidence            449999999999999888744  6899999999999999999998877554443

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=93.75  E-value=0.14  Score=51.17  Aligned_cols=56  Identities=21%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          134 NGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...++|||+|.|..|+.+++.| -.|+|.|----+.+..++-...|++.++|.++|-
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk  123 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK  123 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence            3578999999999999999876 4799999877788888888888999999998764

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=93.72  E-value=0.6  Score=41.66  Aligned_cols=77  Identities=14%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHhc---CCC-CCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          117 ISVTIQEILEKMKK---EGK-NGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       117 ~~~~~~~~L~~~~~---~~~-~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .++.+..+|.....   -.+ -+.|+|+|+|.|..-.-+++.|  .+..++|-++..+++.+...+.++..+.|++-..-
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D  126 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD  126 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence            34444444444433   123 3499999999999988888866  56899999999988854444456665546665554


Q ss_pred             Eec
Q 020824          191 VSD  193 (321)
Q Consensus       191 lsd  193 (321)
                      +-+
T Consensus       127 I~~  129 (227)
T KOG1271|consen  127 ITD  129 (227)
T ss_pred             ccC
Confidence            433

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=93.68  E-value=0.15  Score=45.78  Aligned_cols=68  Identities=22%  Similarity=0.117  Sum_probs=54.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEe
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHK  202 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~  202 (321)
                      .+.+|+|.||+.|..++.+++.|+ .|++-|-+|...+.+.-|.+.|+.  .+.+.+.=+...++...+..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIGSPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccCCCcceeEEE
Confidence            789999999999999999999884 799999999999999999999985  35554443333555555554

>PRK00811 spermidine synthase; Provisional

Probab=93.39  E-value=0.32  Score=45.90  Aligned_cols=45  Identities=9%  Similarity=-0.136  Sum_probs=39.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++...|+|||+|.|..+..+.+. + .+|.++|.+|...+..++.+.
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~  121 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLP  121 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhH
Confidence            45678999999999999988874 4 689999999999999988764

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=93.18  E-value=0.84  Score=40.67  Aligned_cols=66  Identities=18%  Similarity=0.123  Sum_probs=50.7

Q ss_pred             HHHHHHHHhcC--CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          121 IQEILEKMKKE--GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       121 ~~~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +.+-|-+++.+  -++..|+|+=||.|...+.+...| .+++.+|-+...++.|++|++.=+...++++
T Consensus        29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~   97 (187)
T COG0742          29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARV   97 (187)
T ss_pred             HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEE
Confidence            33334444433  478999999999999999999888 5899999999999999999875443333333

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.11  E-value=0.29  Score=48.06  Aligned_cols=48  Identities=25%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHH
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQ  169 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~  169 (321)
                      -+++..+.+...-+.+||||||.|+.|-.++- .|..|+|+|-+-...+
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~  190 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVE  190 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHH
Confidence            35566666666779999999999999988875 7899999999955433

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=93.08  E-value=0.28  Score=45.82  Aligned_cols=68  Identities=18%  Similarity=0.316  Sum_probs=46.4

Q ss_pred             hcCCCCCCchhHHH-HHHHHHHhcC---CCCCEEEEECCCCchH--HHH--HHHc-------CCEEEEECCChHHHHHHH
Q 020824          108 KGKPFRKPDISVTI-QEILEKMKKE---GKNGLVVDVGANVGMA--SFA--AAVM-------GFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       108 ~~~~~~~p~~~~~~-~~~L~~~~~~---~~~~~vvDIGAn~G~~--sl~--~a~~-------g~~ViafEP~p~~~~~L~  172 (321)
                      .+..||+|...+.+ +.++..+.+.   +++..|+|+||+.|.-  |+.  +++.       +.+|+|+|.++.+++..+
T Consensus        70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar  149 (264)
T smart00138       70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR  149 (264)
T ss_pred             CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence            56677777655544 3445544422   3457999999999984  333  3321       368999999999999988


Q ss_pred             Hhh
Q 020824          173 DGV  175 (321)
Q Consensus       173 ~n~  175 (321)
                      +.+
T Consensus       150 ~~~  152 (264)
T smart00138      150 AGI  152 (264)
T ss_pred             cCC
Confidence            754

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=92.90  E-value=0.27  Score=45.98  Aligned_cols=41  Identities=22%  Similarity=0.136  Sum_probs=36.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~  173 (321)
                      ....++|||||.|..|..++..=.+|+|=|.++.+..+|++
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~  134 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK  134 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh
Confidence            45789999999999999998766789999999999888875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=92.85  E-value=0.29  Score=44.58  Aligned_cols=55  Identities=15%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             CCEEEEECCCCchHHHHHH--HcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          134 NGLVVDVGANVGMASFAAA--VMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a--~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +..++|||+|.|.-++.+|  .++.+|+.+|++..-...|+.-...=++ +|+++++.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~  124 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHG  124 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehh
Confidence            5899999999999998877  3678899999999988888776554444 46776654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.70  E-value=0.28  Score=44.55  Aligned_cols=63  Identities=22%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc----CCEEEEECCChHHHHHHHHhhh
Q 020824          112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM----GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~----g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +..|.+-.+.-++|...++  +|-.++|||.|.|+.|..++++    |..++++|-.|+.++.-++|+.
T Consensus        63 iSAp~mha~~le~L~~~L~--pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~  129 (237)
T KOG1661|consen   63 ISAPHMHATALEYLDDHLQ--PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLD  129 (237)
T ss_pred             EcchHHHHHHHHHHHHhhc--cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHH
Confidence            3456665556666776664  6799999999999999999862    3456999999999999999876

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=92.69  E-value=0.58  Score=47.45  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=47.7

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ...++..|+|++|.-|.=|..++. ++  +.|+|+|.++.-++.|++|++.-++ .++.+.+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~  170 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTH  170 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence            446889999999999998887775 43  7999999999999999999987666 4555544

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.32  E-value=0.3  Score=45.09  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCCh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVF  165 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p  165 (321)
                      ...++.+-=..++.+++||||..|-||-.+.+.|+ +|+|+|=--
T Consensus        68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~  112 (245)
T COG1189          68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY  112 (245)
T ss_pred             HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccC
Confidence            34444443234889999999999999999999985 799999654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=92.25  E-value=0.51  Score=41.84  Aligned_cols=57  Identities=19%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             EEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          136 LVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       136 ~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      .++|||+|-|.-.+.+|-  +..+++.+|++..-...|+.-+..=++ +|+++++.=+-+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~  109 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE  109 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc
Confidence            899999999998887764  678999999999988888877765565 468887765554

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=92.20  E-value=0.34  Score=44.26  Aligned_cols=51  Identities=16%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHh
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n  174 (321)
                      +++..+ ....-..++|+|||-|.-|-++++  +++.|.+||-+|++++..++.
T Consensus        21 dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r   73 (257)
T COG4106          21 DLLARV-PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR   73 (257)
T ss_pred             HHHhhC-CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh
Confidence            344433 224568899999999999888876  689999999999999987643

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=92.15  E-value=0.27  Score=45.47  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=38.3

Q ss_pred             HHHHHhcCCCC-CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          124 ILEKMKKEGKN-GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       124 ~L~~~~~~~~~-~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      ++..+....++ ...+|||||.|..+..++..-.+|+|.|+++..++.+++.
T Consensus        23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~   74 (261)
T KOG3010|consen   23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKH   74 (261)
T ss_pred             HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence            34444333233 3999999999977777777667899999999999987653

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=91.95  E-value=0.26  Score=44.90  Aligned_cols=59  Identities=19%  Similarity=0.128  Sum_probs=38.8

Q ss_pred             CCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEe
Q 020824          133 KNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVS  192 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Als  192 (321)
                      .....+|+|||+|-.|-.+.. .--+|-.+||++...+..++.+.-+. ..-..++++++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ  114 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQ  114 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHh
Confidence            468999999999999986654 44689999999999999987654311 123444555553

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.94  E-value=0.52  Score=42.88  Aligned_cols=46  Identities=24%  Similarity=0.207  Sum_probs=34.9

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHH
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~  173 (321)
                      ......+...++|||+|.|.++..+++  ++.+++.+|- |..++..++
T Consensus        94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~  141 (241)
T PF00891_consen   94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE  141 (241)
T ss_dssp             HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH
T ss_pred             ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc
Confidence            344445668999999999999998876  6799999997 777766655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=91.94  E-value=0.43  Score=43.38  Aligned_cols=51  Identities=16%  Similarity=-0.033  Sum_probs=39.7

Q ss_pred             CCEEEEECCCCchHHHHH-HHcCCEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824          134 NGLVVDVGANVGMASFAA-AVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVT  185 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~-a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~  185 (321)
                      ..-+++||||.|..=-+. -.++.+|.++||+|.+.+.+.+..+.|.. .++.
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~  128 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVE  128 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceE
Confidence            355799999999854433 34789999999999999999998887754 3444

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=91.49  E-value=0.51  Score=48.28  Aligned_cols=55  Identities=9%  Similarity=0.118  Sum_probs=44.4

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .+.+++|||||.|.+.+.+|+  +...++++|.....+..+.+.....++ .|+.++.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~  403 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFP  403 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEc
Confidence            578999999999999999987  568999999998877777766665555 4666543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.40  E-value=1.6  Score=38.89  Aligned_cols=54  Identities=20%  Similarity=0.226  Sum_probs=44.0

Q ss_pred             CCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          134 NGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+++||||.|..|.++++ .  +...+|.|-||...+.-.+....|+.  ++.++.+
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~t  100 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRT  100 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeeh
Confidence            57899999999999988886 2  47799999999999998888888875  3444444

>KOG2730 consensus Methylase [General function prediction only]

Probab=91.12  E-value=0.25  Score=45.23  Aligned_cols=63  Identities=17%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCc
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRI  195 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~  195 (321)
                      ...++||.=+|.|-.+..++..+..|+++|-+|.-+...++|.+..|+.++|++.+.-+-|..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~  156 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA  156 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence            457899999999999999999999999999999999999999999999888888877654433

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=90.84  E-value=1.7  Score=41.70  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      +.|.+   +++++..+. ..+++++||+=+|-|-+|..+++ . +++|++||-+|..++..++.++-  ...++++++.-
T Consensus         4 H~pVl---l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~n   77 (305)
T TIGR00006         4 HQSVL---LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDN   77 (305)
T ss_pred             Ccchh---HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCC
Confidence            34555   344555443 34778999999999999999986 3 48999999999999888776542  23456666553

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=90.75  E-value=0.24  Score=40.20  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChH
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFE  166 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~  166 (321)
                      +..-|+|||||.|.....+.+-|.+.++||.-.+
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R   91 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR   91 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence            4567999999999999999999999999998643

; GO: 0008168 methyltransferase activity

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=90.34  E-value=0.47  Score=48.12  Aligned_cols=49  Identities=22%  Similarity=0.188  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF  165 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p  165 (321)
                      |-+.+++++......+.-.+++|||||+|.|..++...+..+++|-|+-
T Consensus       101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d  149 (506)
T PF03141_consen  101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPND  149 (506)
T ss_pred             HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEccccc
Confidence            3333455554433445667899999999999999999999999999863

; GO: 0008168 methyltransferase activity

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=90.20  E-value=1.6  Score=41.17  Aligned_cols=65  Identities=23%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      ..++-.+|++|++-|.|-|..|..+++ .  -++++.||-...-++...+-....++.+++++.+--|
T Consensus        99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV  166 (314)
T KOG2915|consen   99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV  166 (314)
T ss_pred             HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence            344456899999999999999999998 3  3899999999888888877777778888888876654

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=89.66  E-value=0.69  Score=41.80  Aligned_cols=34  Identities=29%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCCh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVF  165 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p  165 (321)
                      .++.+|||+||--|.||-.+++. +  .+|+++|-+|
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            47899999999999999999973 3  5699998765

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=89.18  E-value=0.56  Score=43.22  Aligned_cols=45  Identities=27%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +...+|+|+=||.|.-++.+|..|++|+++|-+|..+..++..++
T Consensus        74 ~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~  118 (234)
T PF04445_consen   74 GMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLK  118 (234)
T ss_dssp             TB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHH
T ss_pred             CCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHH
Confidence            344699999999999999999899999999999999999987655

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=88.65  E-value=1  Score=42.53  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---------cCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---------MGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---------~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      |.|.-|..   +.+++..++...++.+|+|-.||.|.+-+.+.+         ...+++++|.++..+...+.|+.+++.
T Consensus        26 G~~~TP~~---i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~  102 (311)
T PF02384_consen   26 GQFYTPRE---IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI  102 (311)
T ss_dssp             GGC---HH---HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred             ceeehHHH---HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence            45555643   555666666666778999999999998776654         357899999999999998888877654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=88.58  E-value=3.5  Score=38.91  Aligned_cols=63  Identities=19%  Similarity=0.084  Sum_probs=50.4

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHH-cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ....+...++..|+|..|.-|.=|..++. ++  ++|+|+|.++.-+..|.+|+..-+. .++.+..
T Consensus        77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~  142 (283)
T PF01189_consen   77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVIN  142 (283)
T ss_dssp             HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEE
T ss_pred             ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEe
Confidence            34445667899999999999998888876 43  8999999999999999999887665 4555554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=88.57  E-value=2.5  Score=36.99  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCE---------EEEECCChHHHHHHHHhhhhcCCCC
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFR---------VLSFEPVFENLQRICDGVWFNRVGD  182 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~---------ViafEP~p~~~~~L~~n~~lN~~~~  182 (321)
                      +.+.+...+-.+....++++++|-=||.|...+.++..  +..         ++++|-++..++..++|+...++..
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~   88 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED   88 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence            44455566666666678899999999999999988764  333         8899999999999999988666543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=88.45  E-value=1.5  Score=39.57  Aligned_cols=59  Identities=14%  Similarity=0.067  Sum_probs=44.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      |-++|.+.+.. .+..|++||+|.|.+..+||+  +..+-.-=|+++.....+++.+...++
T Consensus        14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~   74 (204)
T PF06080_consen   14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL   74 (204)
T ss_pred             HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC
Confidence            45667777643 223599999999999999987  456777778899888888877765544

The function of this family is unknown.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=87.86  E-value=0.93  Score=42.02  Aligned_cols=44  Identities=14%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             EEEEECCCCchHHHHHHH--c--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          136 LVVDVGANVGMASFAAAV--M--GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       136 ~vvDIGAn~G~~sl~~a~--~--g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      ++++||||.|.....+.+  .  +-+|+|.|=+|..++.++++...+.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e  121 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE  121 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence            899999999999888876  3  3799999999999999998866553

>PLN02366 spermidine synthase

Probab=87.83  E-value=2.6  Score=40.43  Aligned_cols=45  Identities=13%  Similarity=-0.188  Sum_probs=38.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++...|++||+|.|.....+++. + .+|..+|.++...+..++.+.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~  136 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP  136 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence            45688999999999998888874 4 689999999999998887653

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=87.76  E-value=1.2  Score=40.92  Aligned_cols=41  Identities=20%  Similarity=0.398  Sum_probs=37.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~  173 (321)
                      ....++|||||.|..+-.+...|...+.+|-+|.+.+.-.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence            47999999999999999888889999999999999887764

>TIGR00417 speE spermidine synthase

Probab=87.50  E-value=1.6  Score=40.71  Aligned_cols=45  Identities=7%  Similarity=-0.193  Sum_probs=37.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +....|++||+|.|..+..+.+.  ..+|.++|.++...+..++++.
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~  117 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLP  117 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhH
Confidence            34469999999999988877764  3689999999999998887653

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=87.43  E-value=7.9  Score=41.28  Aligned_cols=75  Identities=15%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHc------C----------------------------------
Q 020824          117 ISVTIQEILEKMKKE-GKNGLVVDVGANVGMASFAAAVM------G----------------------------------  155 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~-~~~~~vvDIGAn~G~~sl~~a~~------g----------------------------------  155 (321)
                      +.+.+...+-.+..- .++..++|-+||.|++.+.+|.+      |                                  
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            334443333333332 35789999999999998777541      1                                  


Q ss_pred             ----CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          156 ----FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       156 ----~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                          .+++++|-++..++..++|+..+++.+.+++.+.-+
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~  292 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV  292 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh
Confidence                269999999999999999999999877777766543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=87.27  E-value=7.1  Score=36.57  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             EEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCccccc
Q 020824          136 LVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSA  214 (321)
Q Consensus       136 ~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~  214 (321)
                      .++|+-||.|..++-+.+.|++ |+++|-++...+.++.|....-....++  +....+..+.+++..            
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~--~~~~~~~~~~~D~l~------------   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDIT--KIDEKDFIPDIDLLT------------   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccc--cCchhhcCCCCCEEE------------
Confidence            5899999999999999888875 7889999999999988753100000000  000000001111111            


Q ss_pred             cCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhc-CCC
Q 020824          215 TGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQAS-NSS  293 (321)
Q Consensus       215 ~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~-~~~  293 (321)
                                    ...||-.....=..        -+.++..-..+....++++..+  .+++++|--+...... ...
T Consensus        68 --------------~gpPCq~fS~ag~~--------~~~~d~r~~L~~~~~~~i~~~~--P~~~v~ENV~g~~~~~~~~~  123 (275)
T cd00315          68 --------------GGFPCQPFSIAGKR--------KGFEDTRGTLFFEIIRILKEKK--PKYFLLENVKGLLTHDNGNT  123 (275)
T ss_pred             --------------eCCCChhhhHHhhc--------CCCCCchHHHHHHHHHHHHhcC--CCEEEEEcCcchhccCchHH
Confidence                          00111111111000        0112223345666667777764  3478888877655421 245


Q ss_pred             HHHHHHHHHcCCCeEEE
Q 020824          294 AKEIREFLHSVGYHHCN  310 (321)
Q Consensus       294 ~~ei~~~L~~~GY~~~~  310 (321)
                      +.++.+.|++.||.+..
T Consensus       124 ~~~i~~~l~~~GY~~~~  140 (275)
T cd00315         124 LKVILNTLEELGYNVYW  140 (275)
T ss_pred             HHHHHHHHHhCCcEEEE
Confidence            78999999999999743

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=86.57  E-value=1.9  Score=40.44  Aligned_cols=60  Identities=20%  Similarity=0.192  Sum_probs=39.4

Q ss_pred             CchhHHHHHHHHHHhcCC---CCCEEEEECCCCchHHHHHHH--cC-CEEEEECCChHHHHHHHHh
Q 020824          115 PDISVTIQEILEKMKKEG---KNGLVVDVGANVGMASFAAAV--MG-FRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~---~~~~vvDIGAn~G~~sl~~a~--~g-~~ViafEP~p~~~~~L~~n  174 (321)
                      |..-..+.++|..+.+..   ...+|+|+|||.|.....+..  .. .+++++|+++.+.+.-+..
T Consensus        12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l   77 (274)
T PF09243_consen   12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRL   77 (274)
T ss_pred             hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHH
Confidence            333344556666654321   346899999999985544443  22 5799999999988765543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=86.03  E-value=18  Score=32.96  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITF  200 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~  200 (321)
                      ++.++..+.+.++.-+|-|.|||.+..+... ..+.+|++||-...           |   +.|+..++|          
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n---~~Vtacdia----------  114 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N---PRVTACDIA----------  114 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S---TTEEES-TT----------
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C---CCEEEecCc----------
Confidence            4456666666667789999999998776322 13568999986553           2   233332211          


Q ss_pred             EeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEE
Q 020824          201 HKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIY  280 (321)
Q Consensus       201 ~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~Iii  280 (321)
                                .++.        ..  ..+.|-+..|. ++..             .-.+.|+-+.+.|+..   .-..+.
T Consensus       115 ----------~vPL--------~~--~svDv~VfcLS-LMGT-------------n~~~fi~EA~RvLK~~---G~L~IA  157 (219)
T PF05148_consen  115 ----------NVPL--------ED--ESVDVAVFCLS-LMGT-------------NWPDFIREANRVLKPG---GILKIA  157 (219)
T ss_dssp             ----------S-S----------T--T-EEEEEEES----SS--------------HHHHHHHHHHHEEEE---EEEEEE
T ss_pred             ----------cCcC--------CC--CceeEEEEEhh-hhCC-------------CcHHHHHHHHheeccC---cEEEEE
Confidence                      0000        00  11334444443 2211             1134566777777654   235789


Q ss_pred             EEcccchhhcCCCHHHHHHHHHcCCCeEEEEeCCcccee
Q 020824          281 EEDEHLLQASNSSAKEIREFLHSVGYHHCNQHGTDAHCT  319 (321)
Q Consensus       281 E~~~~~~~~~~~~~~ei~~~L~~~GY~~~~~~G~~~~~~  319 (321)
                      |+..+.     .+..+..+.+.+.||.+...+-++.|++
T Consensus       158 EV~SRf-----~~~~~F~~~~~~~GF~~~~~d~~n~~F~  191 (219)
T PF05148_consen  158 EVKSRF-----ENVKQFIKALKKLGFKLKSKDESNKHFV  191 (219)
T ss_dssp             EEGGG------S-HHHHHHHHHCTTEEEEEEE--STTEE
T ss_pred             EecccC-----cCHHHHHHHHHHCCCeEEecccCCCeEE
Confidence            998875     4678889999999999998888777765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK11524 putative methyltransferase; Provisional

Probab=86.02  E-value=3.1  Score=39.16  Aligned_cols=54  Identities=15%  Similarity=0.058  Sum_probs=45.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +++++....  .+|++|+|-=||.|...+.+.+.|-+.++||-+++.++..++.+.
T Consensus       198 ~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        198 LKRIILASS--NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            445555443  478999999999999999999999999999999999988876654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=85.43  E-value=3.3  Score=36.30  Aligned_cols=53  Identities=21%  Similarity=0.191  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHH
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~  172 (321)
                      .+.+++++....  .++++|+|-=||.|.....+.+.|-+.++||-++..++...
T Consensus       178 ~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  178 VELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence            444566666554  47899999999999999999999999999999999887754

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=84.81  E-value=3.4  Score=39.74  Aligned_cols=75  Identities=21%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      +.|.+-   ++++..+. ..+++++||+=-|.|-+|..+.+  .++++++||=+|..++..++++...  .+++++++.-
T Consensus         4 H~PVll---~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~   77 (310)
T PF01795_consen    4 HIPVLL---KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGN   77 (310)
T ss_dssp             ---TTH---HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-
T ss_pred             eecccH---HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEecc
Confidence            456663   34555444 35789999999999999998886  4699999999999999988776532  4678887765


Q ss_pred             Eec
Q 020824          191 VSD  193 (321)
Q Consensus       191 lsd  193 (321)
                      .++
T Consensus        78 F~~   80 (310)
T PF01795_consen   78 FSN   80 (310)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            433

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=84.65  E-value=6  Score=38.64  Aligned_cols=64  Identities=20%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +...++.+.+|.+|+|.-|.-|.=|..+++ +   |..|+|+|.++.=.+.|++|+..-+.. ++.+.+
T Consensus       147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~  214 (355)
T COG0144         147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVN  214 (355)
T ss_pred             HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEe
Confidence            444567778999999999999997777765 3   466899999999999999998866653 344444

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=84.28  E-value=0.63  Score=36.57  Aligned_cols=29  Identities=17%  Similarity=0.287  Sum_probs=5.9

Q ss_pred             EEECCCCchHHHHHHH---cC--CEEEEECCChH
Q 020824          138 VDVGANVGMASFAAAV---MG--FRVLSFEPVFE  166 (321)
Q Consensus       138 vDIGAn~G~~sl~~a~---~g--~~ViafEP~p~  166 (321)
                      |+||...|..+.++++   .+  .++++||+.+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~   34 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG   34 (106)
T ss_dssp             --------------------------EEEESS--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc
Confidence            6899999999988875   23  48999999996

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=84.09  E-value=3.9  Score=36.05  Aligned_cols=49  Identities=12%  Similarity=0.068  Sum_probs=40.3

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhh
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~  175 (321)
                      +.++...+--|++.|+|.|.+|-...+.|   ..+.++|-+|+.+..|.+.+
T Consensus        42 s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~   93 (194)
T COG3963          42 SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY   93 (194)
T ss_pred             hccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC
Confidence            33444566789999999999999887755   67999999999999997754

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.10  E-value=2  Score=37.12  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      |...+.++.+|. ++...+.+..+|+|.|.|-.-+.+++.| ....++|-||-....-+-.....++.++..+
T Consensus        55 pAtteQv~nVLS-ll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf  126 (199)
T KOG4058|consen   55 PATTEQVENVLS-LLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRF  126 (199)
T ss_pred             CccHHHHHHHHH-HccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhh
Confidence            445555677655 4444567899999999999999999988 6789999999765554332223344333333

>PLN02823 spermine synthase

Probab=82.99  E-value=4.9  Score=39.05  Aligned_cols=47  Identities=13%  Similarity=-0.024  Sum_probs=39.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhhc
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      +....++-||+|.|.....+.+. + .+|.++|.+|..++..++.+..+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~  150 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVN  150 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccc
Confidence            34568999999999998888773 3 68999999999999998876544

>PRK01581 speE spermidine synthase; Validated

Probab=81.73  E-value=3.3  Score=40.76  Aligned_cols=43  Identities=12%  Similarity=-0.062  Sum_probs=35.7

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHH
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICD  173 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~  173 (321)
                      ......|++||+|.|.....+.+.+  .+|+++|-+|+..+..++
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Confidence            3455799999999999877777643  799999999999998874

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=81.13  E-value=3.6  Score=39.87  Aligned_cols=43  Identities=9%  Similarity=-0.036  Sum_probs=31.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhh
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~  175 (321)
                      ++..|+|+|||-|.-..-..+.+ ..++++|+....++..++.+
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH
Confidence            67999999999877554444444 78999999999999888766

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=81.00  E-value=2.5  Score=39.30  Aligned_cols=58  Identities=9%  Similarity=0.071  Sum_probs=39.2

Q ss_pred             HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          122 QEILEKMKKE-GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       122 ~~~L~~~~~~-~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      ++++..+... ++.++|+|||||.=-.++....  .+..++|+|-+...++.+..-+..-+
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~  153 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG  153 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence            3444444433 3579999999988777775543  36899999999999999987765444

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=80.61  E-value=14  Score=35.31  Aligned_cols=73  Identities=12%  Similarity=0.126  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.+.++..+..+...+..-.|+||-||.|-|-+-+..  +.  ..|...|=+|.+++.-++.++.+++++-+++.+.
T Consensus       119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~  195 (311)
T PF12147_consen  119 LEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQG  195 (311)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEec
Confidence            3444555556665556779999999999999887754  22  6899999999999999999999998653355443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	1e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Length = 409

 Score = 93.2 bits (231), Expect = 1e-21
 Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 25/192 (13%)

Query: 122 QEILEKMKKEGKNGLVVDVGANVGM--ASFAAAVMGF--RVLSFEPV---FENLQRICDG 174
                 + +   +  +VD GA++G   A       G   RV   EP     + LQ +   
Sbjct: 215 LYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274

Query: 175 VWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSI 234
                    +TV+     +    + F+   G       +         ++ E A  +   
Sbjct: 275 YTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPA--------DADHEPADLIDVR 326

Query: 235 PLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSA 294
           P+D++I +      +K+D++G E   LKGA + +S  K   P L      H     ++  
Sbjct: 327 PIDDIIDD--APTFIKMDIEGSELSALKGARRAISEHK---PKLAISA-YH----RSTDL 376

Query: 295 KEIREFLHSVGY 306
            ++  ++ S+  
Sbjct: 377 LDLTNYILSIRP 388

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 8e-10
 Identities = 46/357 (12%), Positives = 107/357 (29%), Gaps = 129/357 (36%)

Query: 62  FNCLKCPQSHPIIANVVENV---KYPFIYS-LSDLGNLPDKPHKNIV----RLLK-GKPF 112
           F  L   +   ++   VE V    Y F+ S +      P    +  +    RL    + F
Sbjct: 68  FWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 113 RKPDIS-----VTIQEILEKMKKE-----------GKNGLVVDVGANVGMASFAAAVMGF 156
            K ++S     + +++ L +++             GK  + +DV  +  +       M F
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK----MDF 182

Query: 157 RV--LSF------EPVFENLQRIC------------------------------------ 172
           ++  L+       E V E LQ++                                     
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 173 --------DGVW-------FN---RVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSA 214
                     V        FN   ++  L+T     V+D +   T   +   LD+ +++ 
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHI--SLDHHSMTL 298

Query: 215 TGAKLAFKSNEEIALQVRSIPLDEVIPEAE---PVLL------LKIDVQGWEY------- 258
           T  ++     + + L+       ++  E     P  L      ++  +  W+        
Sbjct: 299 TPDEV-----KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 259 ---HVLKGATKLLSRKKGESPYL---IYEED----EHLLQA--SNSSAKEIREFLHS 303
               +++ +  +L   +    +    ++         LL     +    ++   ++ 
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	99.94
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.64
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.61
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.44
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.38
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.26
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.24
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.2
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.15
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.15
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.13
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.12
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.1
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.1
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.08
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.08
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.06
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.05
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.05
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.03
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.01
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.0
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.0
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.99
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.98
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.98
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.96
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.95
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.93
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.92
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.92
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.91
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.91
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.9
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.89
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.89
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.89
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.89
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.88
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.87
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	97.86
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.85
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.84
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.82
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.81
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	97.79
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.79
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.79
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.79
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.79
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	97.78
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.78
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.78
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	97.77
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.76
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.76
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.76
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.75
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.75
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.74
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.74
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.73
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.73
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.72
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.72
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.72
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.71
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.71
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.71
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	97.7
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.7
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.7
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.7
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.69
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.68
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.67
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.67
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.66
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.65
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.65
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.65
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.65
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.64
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.63
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.63
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.62
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.62
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.62
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.62
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.61
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.6
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	97.6
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.6
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.6
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.59
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.58
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.57
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	97.57
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.56
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.56
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.55
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.55
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.55
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.55
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.54
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.54
1xxl_A	239	YCGJ protein; structural genomics, protein structu	97.54
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.53
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.52
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.52
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.52
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.52
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	97.51
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.5
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.5
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.49
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.47
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.47
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.45
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.45
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.45
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.45
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	97.45
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.44
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.44
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.43
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.41
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.4
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.4
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.4
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.39
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.39
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.38
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.38
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.38
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.37
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.37
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.36
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.35
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.35
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.35
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.32
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.31
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.3
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.28
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.28
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.28
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.27
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.26
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.26
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.26
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.26
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.26
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.26
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.25
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.24
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.24
3ocj_A	305	Putative exported protein; structural genomics, PS	97.23
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.23
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.23
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.22
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.22
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.21
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.21
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.21
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.2
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.19
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.19
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.18
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.18
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.17
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.16
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.16
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.15
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.14
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.14
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.14
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.12
3ege_A	261	Putative methyltransferase from antibiotic biosyn	97.1
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.1
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.1
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.09
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.09
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.06
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.05
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.05
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.02
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.95
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	96.94
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.92
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.92
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.89
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.88
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.88
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.86
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.85
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	96.85
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.84
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.82
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.81
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.78
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	96.78
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.77
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.71
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	96.69
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	96.67
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.66
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.64
3cc8_A	230	Putative methyltransferase; structural genomics, j	96.63
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	96.63
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	96.62
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	96.59
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.59
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.57
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	96.57
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.54
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.53
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.51
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.5
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	96.49
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.49
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.49
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.46
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.45
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	96.45
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.44
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.44
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.44
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	96.4
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	96.35
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.32
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	96.3
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.27
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.26
2o07_A	304	Spermidine synthase; structural genomics, structur	96.26
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.24
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.17
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.17
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	96.15
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.11
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.05
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.92
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.88
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.88
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.86
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	95.85
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.76
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.74
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.68
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.61
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.47
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.47
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.4
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	95.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	95.04
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	94.87
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.51
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	94.44
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	94.19
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	94.07
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	94.03
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	93.88
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	93.65
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.56
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	93.54
3lkd_A	542	Type I restriction-modification system methyltrans	93.53
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	92.91
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	92.76
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	92.42
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	92.26
3khk_A	544	Type I restriction-modification system methylation	92.2
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	92.13
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	92.08
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	91.89
3sso_A	419	Methyltransferase; macrolide, natural product, ros	91.21
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	90.76
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	90.7
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.62
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	90.23
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	90.11
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	89.08
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	88.83
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	87.12
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	85.41
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	84.94
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	83.54
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	82.33
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	81.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	80.74
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	80.62
3ufb_A	530	Type I restriction-modification system methyltran	80.3

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=99.94  E-value=3.6e-26  Score=223.74  Aligned_cols=165  Identities=23%  Similarity=0.326  Sum_probs=127.9

Q ss_pred             CCCCEEEEECCCCchHHHHHH-Hc-C--CEEEEECCChHHHHHHHHhhhh--cCCC-CceEEEEEeEecCcceEEEEeec
Q 020824          132 GKNGLVVDVGANVGMASFAAA-VM-G--FRVLSFEPVFENLQRICDGVWF--NRVG-DLVTVYEAAVSDRIGNITFHKLV  204 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a-~~-g--~~ViafEP~p~~~~~L~~n~~l--N~~~-~~v~~~~~Alsd~~g~~~~~~~~  204 (321)
                      .++++|+|||||+|.+|+.++ +. +  ++|+||||+|.+++.|++|++.  |+.. ++++++++|+|+++|++.|+...
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~~~g~~~f~~~~  304 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEG  304 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC----
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEECCCCEEEEEeCC
Confidence            588999999999999999988 43 3  7999999999999999999998  6544 79999999999999998887532


Q ss_pred             CCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcc
Q 020824          205 GRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDE  284 (321)
Q Consensus       205 ~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~  284 (321)
                      +  ..+++....      ......++|+++|||++  ...++++|||||||+|++||+|+.++|++.   +|.+++|..+
T Consensus       305 ~--~~s~l~~~~------~~~~~~~~V~~~tLD~~--~~~~id~lKiDvEG~E~~VL~G~~~~l~~~---~P~l~ie~~h  371 (409)
T 2py6_A          305 G--HGGFVKPAD------ADHEPADLIDVRPIDDI--IDDAPTFIKMDIEGSELSALKGARRAISEH---KPKLAISAYH  371 (409)
T ss_dssp             ------------------------CEEEEECHHHH--CSSCCSEEEECCSSCHHHHHHTTHHHHHHH---CCEEEEECCS
T ss_pred             C--CCccccCCc------ccCCCceEEEEEEhhhc--CCCCCCEEEEcCCCChHHHHHHHHHHHHHc---CCEEEEEEec
Confidence            1  122221110      11123468999999999  346899999999999999999999999998   6888888754


Q ss_pred             cchhhcCCCHHHHHHHHHcC--CCeEEEEeCC
Q 020824          285 HLLQASNSSAKEIREFLHSV--GYHHCNQHGT  314 (321)
Q Consensus       285 ~~~~~~~~~~~ei~~~L~~~--GY~~~~~~G~  314 (321)
                      .     ..++.++.++|.++  ||+++.++.+
T Consensus       372 ~-----~~~~~~i~~~L~~~~~gY~~~~r~~~  398 (409)
T 2py6_A          372 R-----STDLLDLTNYILSIRPDYQIGLRHHT  398 (409)
T ss_dssp             S-----TTHHHHHHHHHHHHCTTCCEEEEECS
T ss_pred             C-----chhHHHHHHHHHHhCCCCeEEEEecC
Confidence            3     34678999999999  9999887654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.64  E-value=1.4e-06  Score=76.27  Aligned_cols=135  Identities=11%  Similarity=0.100  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEE
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNIT  199 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~  199 (321)
                      .+...+-..+...++.+|+|||||.|.+++.+++.+++|+++|.++..++..+++.+.+++..+++++..   |-.    
T Consensus        42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~----  114 (204)
T 3njr_A           42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG---TAP----  114 (204)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CTT----
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC---chh----
Confidence            3433444445556789999999999999999998899999999999999999999887776334444321   000    


Q ss_pred             EEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEE
Q 020824          200 FHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLI  279 (321)
Q Consensus       200 ~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~Ii  279 (321)
                                                            +.+...+..|++-++. +.+.++++.+.+.|+..    -.++
T Consensus       115 --------------------------------------~~~~~~~~~D~v~~~~-~~~~~~l~~~~~~Lkpg----G~lv  151 (204)
T 3njr_A          115 --------------------------------------AALADLPLPEAVFIGG-GGSQALYDRLWEWLAPG----TRIV  151 (204)
T ss_dssp             --------------------------------------GGGTTSCCCSEEEECS-CCCHHHHHHHHHHSCTT----CEEE
T ss_pred             --------------------------------------hhcccCCCCCEEEECC-cccHHHHHHHHHhcCCC----cEEE
Confidence                                                  0000112344444544 33444888888877653    3666


Q ss_pred             EEEcccchhhcCCCHHHHHHHHHcCCCeEEE
Q 020824          280 YEEDEHLLQASNSSAKEIREFLHSVGYHHCN  310 (321)
Q Consensus       280 iE~~~~~~~~~~~~~~ei~~~L~~~GY~~~~  310 (321)
                      +.....      ....++.++|++.||++..
T Consensus       152 ~~~~~~------~~~~~~~~~l~~~g~~i~~  176 (204)
T 3njr_A          152 ANAVTL------ESETLLTQLHARHGGQLLR  176 (204)
T ss_dssp             EEECSH------HHHHHHHHHHHHHCSEEEE
T ss_pred             EEecCc------ccHHHHHHHHHhCCCcEEE
Confidence            666432      3567899999999998755

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.61  E-value=7.7e-08  Score=89.27  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=60.5

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .|+.+....+-+++ ....  .+|.+|+|+|||+|.+++.+|+.| .+|+|+|.||..++.+++|+++|++.+++++++
T Consensus       106 ~~f~~~~~~er~ri-~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~  181 (278)
T 3k6r_A          106 IMFSPANVKERVRM-AKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYN  181 (278)
T ss_dssp             SCCCGGGHHHHHHH-HHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred             eEEcCCcHHHHHHH-HHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEe
Confidence            45556665544443 3344  468999999999999999999877 699999999999999999999999977776643

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.44  E-value=3.2e-06  Score=75.95  Aligned_cols=128  Identities=16%  Similarity=0.224  Sum_probs=87.4

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEe
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHK  202 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~  202 (321)
                      +..++  .++.+|+|||||.|+.++.+++.+  .+|+|+|-+|..++..++|++.|++.+++++              ..
T Consensus         9 l~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~--------------~~   72 (225)
T 3kr9_A            9 VASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV--------------RL   72 (225)
T ss_dssp             HHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEE--------------EE
T ss_pred             HHHhC--CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE--------------EE
Confidence            34444  367899999999999999999865  6899999999999999999999987554443              21


Q ss_pred             ecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCch--HHHHHhhHHhhhhhcCCCCEEEE
Q 020824          203 LVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWE--YHVLKGATKLLSRKKGESPYLIY  280 (321)
Q Consensus       203 ~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E--~~VL~G~~~~L~~~k~~~p~Iii  280 (321)
                      .      ..                        ++.+-. .+++|++-|-=-|.+  .++|..+...|...    ..+++
T Consensus        73 ~------d~------------------------l~~l~~-~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~----~~lVl  117 (225)
T 3kr9_A           73 A------NG------------------------LAAFEE-TDQVSVITIAGMGGRLIARILEEGLGKLANV----ERLIL  117 (225)
T ss_dssp             C------SG------------------------GGGCCG-GGCCCEEEEEEECHHHHHHHHHHTGGGCTTC----CEEEE
T ss_pred             C------ch------------------------hhhccc-CcCCCEEEEcCCChHHHHHHHHHHHHHhCCC----CEEEE
Confidence            0      00                        000100 013454444333555  56777776666542    46777


Q ss_pred             EEcccchhhcCCCHHHHHHHHHcCCCeEEEE
Q 020824          281 EEDEHLLQASNSSAKEIREFLHSVGYHHCNQ  311 (321)
Q Consensus       281 E~~~~~~~~~~~~~~ei~~~L~~~GY~~~~~  311 (321)
                      .-.        .....+.++|.++||.+...
T Consensus       118 q~~--------~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A          118 QPN--------NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             EES--------SCHHHHHHHHHHTTEEEEEE
T ss_pred             ECC--------CCHHHHHHHHHHCCCEEEEE
Confidence            543        25679999999999998664

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.38  E-value=1.8e-05  Score=68.33  Aligned_cols=131  Identities=17%  Similarity=0.159  Sum_probs=85.0

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNI  198 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~  198 (321)
                      +...+-..+...++.+|+|||||.|.++..+++.+  ++|+++|.++..++..+++...+++ ++++++..-+.+     
T Consensus        28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~-----  101 (204)
T 3e05_A           28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE-----  101 (204)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT-----
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh-----
Confidence            43333334455678999999999999999999855  8999999999999999999887776 445443211000     


Q ss_pred             EEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCC-chHHHHHhhHHhhhhhcCCCCE
Q 020824          199 TFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQG-WEYHVLKGATKLLSRKKGESPY  277 (321)
Q Consensus       199 ~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG-~E~~VL~G~~~~L~~~k~~~p~  277 (321)
                                  .                            +...+..|++-++.-. .-..+++.+.+.|+..    -.
T Consensus       102 ------------~----------------------------~~~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg----G~  137 (204)
T 3e05_A          102 ------------G----------------------------LDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE----GV  137 (204)
T ss_dssp             ------------T----------------------------CTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTT----CE
T ss_pred             ------------h----------------------------hhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----eE
Confidence                        0                            0000123333333221 2236777777777653    36


Q ss_pred             EEEEEcccchhhcCCCHHHHHHHHHcCCCe
Q 020824          278 LIYEEDEHLLQASNSSAKEIREFLHSVGYH  307 (321)
Q Consensus       278 IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~  307 (321)
                      +++.....      ....++.++|+++||.
T Consensus       138 l~~~~~~~------~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          138 IVLNAVTL------DTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             EEEEECBH------HHHHHHHHHHHHTTCE
T ss_pred             EEEEeccc------ccHHHHHHHHHHCCCc
Confidence            66665432      2567899999999985

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.26  E-value=2.8e-06  Score=72.15  Aligned_cols=64  Identities=14%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..++...+  .++.+|+|+|||.|.++..+++.+++|+++|.+|..++..+++...+++ ++++++.
T Consensus        13 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~   76 (185)
T 3mti_A           13 HDFLAEVL--DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELIL   76 (185)
T ss_dssp             HHHHHTTC--CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEE
T ss_pred             HHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEe
Confidence            34444444  4679999999999999999998899999999999999999999988876 5666654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.24  E-value=1.3e-05  Score=73.59  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=83.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCc
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNS  210 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s  210 (321)
                      .++.+|+|+|||.|.+++.+++.|+ +|+++|.+|..++..++|...|++.+++++++.   |-.               
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~---D~~---------------  185 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM---DNR---------------  185 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS---CTT---------------
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC---CHH---------------
Confidence            3578999999999999999998776 699999999999999999999987543443221   100               


Q ss_pred             cccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhc
Q 020824          211 AVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQAS  290 (321)
Q Consensus       211 ~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~  290 (321)
                      .+..                            ....|++-+|--..-.+.++.+.+.|+..   .-.++.+..+.... .
T Consensus       186 ~~~~----------------------------~~~fD~Vi~~~p~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~-~  233 (278)
T 2frn_A          186 DFPG----------------------------ENIADRILMGYVVRTHEFIPKALSIAKDG---AIIHYHNTVPEKLM-P  233 (278)
T ss_dssp             TCCC----------------------------CSCEEEEEECCCSSGGGGHHHHHHHEEEE---EEEEEEEEEEGGGT-T
T ss_pred             Hhcc----------------------------cCCccEEEECCchhHHHHHHHHHHHCCCC---eEEEEEEeeccccc-c
Confidence            0000                            01223333333333355677677766653   12344454432211 2


Q ss_pred             CCCHHHHHHHHHcCCCeEEE
Q 020824          291 NSSAKEIREFLHSVGYHHCN  310 (321)
Q Consensus       291 ~~~~~ei~~~L~~~GY~~~~  310 (321)
                      .....++.+.+.+.||++..
T Consensus       234 ~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          234 REPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             TTTHHHHHHHHHHTTCEEEE
T ss_pred             ccHHHHHHHHHHHcCCeeEE
Confidence            35678999999999998743

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.20  E-value=2.5e-05  Score=70.32  Aligned_cols=60  Identities=18%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +..++  .++.+|+|||||.|+.++.+++.|  .+|+|+|-+|..++..++|++.|++.+++++
T Consensus        15 i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~   76 (230)
T 3lec_A           15 VANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV   76 (230)
T ss_dssp             HHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            34444  367899999999999999999865  5899999999999999999999988655555

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.15  E-value=3.6e-06  Score=81.15  Aligned_cols=69  Identities=29%  Similarity=0.300  Sum_probs=56.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec--CcceEEEEe
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD--RIGNITFHK  202 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd--~~g~~~~~~  202 (321)
                      ++.+|+|||||.|..|+++|+.|+ +|+|+|.++ +++..+++++.|++.++|++++.-+-+  -+..+.+.+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEE
Confidence            678999999999999999999985 799999997 788889999999998899998765433  233455444

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.15  E-value=6.4e-06  Score=69.38  Aligned_cols=64  Identities=19%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVT  185 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~  185 (321)
                      +.++..+....++..|+|+|||.|.++..+++.+ .+|+++|.++..++..++++..+++.++++
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~   84 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFT   84 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEE
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceE
Confidence            3444444323467899999999999999998875 699999999999999999988776533343

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.13  E-value=9.1e-06  Score=68.61  Aligned_cols=73  Identities=16%  Similarity=0.223  Sum_probs=54.4

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      |......+.++..+....++..|+|+|||.|.++..+++.+ .+|+++|.++..++..++|+..+++.++++++
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   99 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVR   99 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEE
Confidence            44444344444444332467899999999999999888765 69999999999999999999887754444443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.12  E-value=1.5e-05  Score=66.69  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +.+.+...+...++..++|+|||.|.++..+++.+.+|+++|+++...+..++++..+++ +++++
T Consensus        23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~   87 (183)
T 2yxd_A           23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQI   87 (183)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEE
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEE
Confidence            333344444555788999999999999999999778999999999999999999887765 34443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.10  E-value=1.6e-05  Score=71.69  Aligned_cols=89  Identities=12%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             HHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          103 IVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       103 i~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +.+.........|........++..+....++..|+|||||.|.++..+++.+ ++|+++|+++..++..+++...+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~   95 (267)
T 3kkz_A           16 ICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ   95 (267)
T ss_dssp             HHHHHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            44444444445566655556666554434578999999999999999999864 69999999999999999998888776


Q ss_pred             CceEEEEEeE
Q 020824          182 DLVTVYEAAV  191 (321)
Q Consensus       182 ~~v~~~~~Al  191 (321)
                      +++++...-+
T Consensus        96 ~~v~~~~~d~  105 (267)
T 3kkz_A           96 NRVTGIVGSM  105 (267)
T ss_dssp             TTEEEEECCT
T ss_pred             cCcEEEEcCh
Confidence            6677765433

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.10  E-value=1.6e-05  Score=70.78  Aligned_cols=86  Identities=10%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             HHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          103 IVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       103 i~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +.+.........|........++..+....++..|+|||||.|.++..+++.+ .+|+++|+++...+..+++...+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~   95 (257)
T 3f4k_A           16 ICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA   95 (257)
T ss_dssp             HHHHHTTSSCSSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHcCccccCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC
Confidence            45555444444566656566666655445678899999999999999998854 59999999999999999998887775


Q ss_pred             CceEEEE
Q 020824          182 DLVTVYE  188 (321)
Q Consensus       182 ~~v~~~~  188 (321)
                      ++++++.
T Consensus        96 ~~~~~~~  102 (257)
T 3f4k_A           96 DRVKGIT  102 (257)
T ss_dssp             TTEEEEE
T ss_pred             CceEEEE
Confidence            5566544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.08  E-value=9.7e-06  Score=72.04  Aligned_cols=73  Identities=12%  Similarity=0.184  Sum_probs=56.4

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      |.+......++..++...++..|+|||||.|..+..+++  ++++|+++|.++..++..++++..+++.++++++
T Consensus        53 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (232)
T 3ntv_A           53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRII  127 (232)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            333344445555555444678999999999999999998  5789999999999999999999877764455543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.08  E-value=1.3e-05  Score=70.11  Aligned_cols=69  Identities=12%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ....+++..+....++..|+|||||.|..+..+++.   +++|+++|.++..++..++++..+++.++++++
T Consensus        50 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  121 (225)
T 3tr6_A           50 PEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR  121 (225)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence            334445555544346789999999999999999974   689999999999999999999887765445543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.06  E-value=1.7e-05  Score=67.85  Aligned_cols=55  Identities=20%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++..|+|+|||.|..++.+++.+ .+|+++|.++..++..++|...+++ ++++++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~   98 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLR   98 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEE
Confidence            367899999999999999887766 5899999999999999999988876 445443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.05  E-value=2.4e-05  Score=65.75  Aligned_cols=66  Identities=24%  Similarity=0.286  Sum_probs=53.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +...+...+...++..++|+|||.|.++..+++.+.+|+++|.++...+..++++..++...++++
T Consensus        21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~   86 (192)
T 1l3i_A           21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTL   86 (192)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEE
Confidence            444444445556789999999999999999998779999999999999999999887765344444

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.05  E-value=2.1e-05  Score=68.74  Aligned_cols=68  Identities=18%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ....+++..+....++..|+|||||.|..+.++++.   +++|+++|.++..++..++++..+++.+++++
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  114 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEV  114 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            334455555544446789999999999999999974   78999999999999999999887776544544

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.03  E-value=2.1e-05  Score=65.18  Aligned_cols=48  Identities=21%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..++|+|||.|.++..+++.+.+|+++|.++..++..++|+..++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   88 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL   88 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            678999999999999999999888899999999999999999887754

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.01  E-value=1.1e-05  Score=70.80  Aligned_cols=67  Identities=24%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ...+++..++...++..|+|||||.|..++++++   .+++|+++|.+|..++..++|+..+++.+++++
T Consensus        45 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  114 (221)
T 3u81_A           45 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTI  114 (221)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEE
Confidence            3444555555434668999999999999999997   268999999999999999999988876544554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.00  E-value=5.3e-05  Score=63.72  Aligned_cols=58  Identities=14%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +.++.. +...++..|+|+|||.|.++..+++.+.+|+++|+++..++..+++...++.
T Consensus        42 ~~l~~~-~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~   99 (194)
T 1dus_A           42 KILVEN-VVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNL   99 (194)
T ss_dssp             HHHHHH-CCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHH-cccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            334443 3445778999999999999999988789999999999999999999887765

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.00  E-value=1.5e-05  Score=70.49  Aligned_cols=65  Identities=17%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +..+....++..|+|+|||.|.++..+++.|.+|+++|.++..++..++|+..+++.++++++..
T Consensus        70 ~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~  134 (241)
T 3gdh_A           70 AGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG  134 (241)
T ss_dssp             HHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred             HHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC
Confidence            33333323679999999999999999999999999999999999999999988876446666554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.99  E-value=2.7e-05  Score=65.13  Aligned_cols=61  Identities=16%  Similarity=0.102  Sum_probs=49.1

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCce
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLV  184 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v  184 (321)
                      .+-..+...++..|+|||||.|.++..+++.  +++|+++|+++...+..++++..++...++
T Consensus        16 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   78 (178)
T 3hm2_A           16 LAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI   78 (178)
T ss_dssp             HHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE
T ss_pred             HHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE
Confidence            3333444557789999999999999999874  689999999999999999998877653344

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.98  E-value=5.7e-05  Score=67.09  Aligned_cols=83  Identities=10%  Similarity=-0.027  Sum_probs=64.5

Q ss_pred             hcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          108 KGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       108 ~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ....+..|.....++.++.. +...++..|+|||||.|..+..+++ .|.+|+++|+++..++..+++...+++.+++++
T Consensus        12 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~   90 (256)
T 1nkv_A           12 SEHRIHNPFTEEKYATLGRV-LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHF   90 (256)
T ss_dssp             SSCSSSSSCCHHHHHHHHHH-TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             CCccccCCCCHHHHHHHHHh-cCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence            34455667666666666554 3446789999999999999998887 588999999999999999999887777557777


Q ss_pred             EEEeE
Q 020824          187 YEAAV  191 (321)
Q Consensus       187 ~~~Al  191 (321)
                      ...-+
T Consensus        91 ~~~d~   95 (256)
T 1nkv_A           91 IHNDA   95 (256)
T ss_dssp             EESCC
T ss_pred             EECCh
Confidence            65433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.98  E-value=1.6e-05  Score=71.78  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             HHHHHhcCC-CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          124 ILEKMKKEG-KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       124 ~L~~~~~~~-~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      ++..+.... ++..|+|+|||.|..++.+++.+ .+|+++|.++..++..++|+..|++.+++++++.-+
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~  108 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL  108 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcH
Confidence            466666655 78999999999999999999865 499999999999999999999998876777765443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.96  E-value=1.7e-05  Score=69.01  Aligned_cols=48  Identities=15%  Similarity=-0.000  Sum_probs=43.3

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..|+|+|||.|.+++.++..+ .+|+++|.++..++..++|...|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~  101 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC  101 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            56899999999999999877766 5999999999999999999988875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.95  E-value=3.9e-05  Score=66.33  Aligned_cols=61  Identities=13%  Similarity=0.026  Sum_probs=51.2

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .+...++..|+|||||.|..+..+++.+.+|+++|+++..++..++++..++.. ++++...
T Consensus        72 ~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~  132 (210)
T 3lbf_A           72 LLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHG  132 (210)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEES
T ss_pred             hcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEEC
Confidence            344467899999999999999999988999999999999999999998877653 5555443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.93  E-value=4e-05  Score=69.87  Aligned_cols=65  Identities=15%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH----cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV----MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++.+++  .++..|+|||||.|..+..+++    .|++|+++|++|.+++..++++...+...++++++.
T Consensus        62 ~l~~~~~--~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~  130 (261)
T 4gek_A           62 MLAERFV--QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG  130 (261)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES
T ss_pred             HHHHHhC--CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeec
Confidence            3444444  4779999999999999999986    368999999999999999998876665556766543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.92  E-value=1.8e-05  Score=68.77  Aligned_cols=68  Identities=24%  Similarity=0.196  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ...++..+....++..|+|||||.|..+..+++.   +++|+++|+++...+..++++..+++.++++++.
T Consensus        44 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  114 (210)
T 3c3p_A           44 TGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQV  114 (210)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEE
Confidence            3444544443335689999999999999999873   6899999999999999999988776644555543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.92  E-value=4.3e-05  Score=68.63  Aligned_cols=68  Identities=15%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ...+++..+....++..|+|||||.|..+..+++.   +++|+++|.++..++..++++..+++.++++++
T Consensus        50 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~  120 (248)
T 3tfw_A           50 NQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR  120 (248)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            34445555543346789999999999999999974   689999999999999999999888775556654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.91  E-value=8.1e-06  Score=74.60  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh-------HHHHHHHHhhhhcCCCCceEEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF-------ENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p-------~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +...++.+++.+|+|+|||.|..++.+++.|++|+++|.+|       ..++..++|.+.|++.+++++++.
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~  146 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFG  146 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEES
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEEC
Confidence            33333444678999999999999999999899999999999       888888888888876445666543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.91  E-value=5.7e-05  Score=66.14  Aligned_cols=67  Identities=13%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ...++..+....++..|+|||||.|..+..+++.   +++|+++|.++...+..++++..+++.++++++
T Consensus        57 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~  126 (229)
T 2avd_A           57 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR  126 (229)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEE
Confidence            3345555544456789999999999999999973   689999999999999999998877765555543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.90  E-value=0.00019  Score=64.66  Aligned_cols=46  Identities=11%  Similarity=0.069  Sum_probs=40.7

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhh
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ..+|++|+|+|||.|+++..+|+ .  .++|+|+|.+|+..+.++++..
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~  123 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR  123 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH
Confidence            35899999999999999999997 3  4899999999999999987654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.89  E-value=2.8e-05  Score=67.59  Aligned_cols=54  Identities=13%  Similarity=-0.052  Sum_probs=46.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++..|+|+|||.|..++.+++.+ .+|+++|.++..++..++|...|++ ++++++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~  108 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVV  108 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEE
Confidence            56899999999999999887766 5999999999999999999988775 445443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.89  E-value=2.4e-05  Score=71.06  Aligned_cols=60  Identities=17%  Similarity=0.087  Sum_probs=51.0

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +..++  .++.+|+|||||.|+.++.+++.+  .+|+|+|-+|..++..++|++.|++.+++++
T Consensus        15 i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v   76 (244)
T 3gnl_A           15 VASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV   76 (244)
T ss_dssp             HHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            34444  367899999999999999999865  5899999999999999999999998655555

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.89  E-value=2.6e-05  Score=71.39  Aligned_cols=50  Identities=22%  Similarity=0.325  Sum_probs=45.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      .++.+++|+|||.|.+++.+++.  +++|+++|.+|..++.+++|.+.|++.
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~  169 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN  169 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            47789999999999999999985  359999999999999999999999873

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.89  E-value=4.8e-05  Score=71.90  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCC-ceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGD-LVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~-~v~~  186 (321)
                      +++..|+|+|||.|.+++.+++.|++|+++|.++..++..++|+..|++.+ ++++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~  207 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRW  207 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEE
Confidence            467899999999999999999988899999999999999999999998743 2444

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.88  E-value=3.9e-05  Score=67.73  Aligned_cols=69  Identities=13%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...++..++...++..|+|||||.|..+..+++.  +++|+++|.++..++..++++..+++.+++++...
T Consensus        42 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  112 (233)
T 2gpy_A           42 GMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG  112 (233)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred             HHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            3444444444346789999999999999999874  68999999999999999999888776556666543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.87  E-value=3.1e-05  Score=68.72  Aligned_cols=69  Identities=7%  Similarity=0.051  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcCC---CCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCC-CceEEE
Q 020824          119 VTIQEILEKMKKEG---KNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVG-DLVTVY  187 (321)
Q Consensus       119 ~~~~~~L~~~~~~~---~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~~  187 (321)
                      ....+++..+....   ++..++||||+.|+.++++++ .  +++|+++|.++..++..+++++.+++. ++++++
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~  114 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL  114 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence            33344454444322   334999999999999999987 3  689999999999999999999887765 456554

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=97.86  E-value=4.8e-05  Score=66.19  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +...+...++..|+|||||.|.++..+++.+  .+|+++|+++..++..++++..+++
T Consensus        21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~   78 (217)
T 3jwh_A           21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRL   78 (217)
T ss_dssp             HHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcC
Confidence            3333333467899999999999999999864  6999999999999999999876665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.85  E-value=6.4e-05  Score=67.10  Aligned_cols=69  Identities=10%  Similarity=0.009  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .....++..+....+...|+||||+.|+.++++++.   +++|+++|.+|..++..++++..+++.++++++
T Consensus        56 ~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~  127 (237)
T 3c3y_A           56 PLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI  127 (237)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            334455555554446689999999999999999873   689999999999999999998877664445543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.84  E-value=5.9e-05  Score=71.29  Aligned_cols=66  Identities=26%  Similarity=0.343  Sum_probs=54.3

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      +...+...++.+|+|||||.|..++.+++.|. +|+++|.++ .++..+++++.|++.++++++..-+
T Consensus        56 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~  122 (340)
T 2fyt_A           56 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKI  122 (340)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             HHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeH
Confidence            33333335788999999999999999998875 999999997 8899999999898877888877544

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.82  E-value=5.1e-05  Score=69.95  Aligned_cols=67  Identities=16%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.++.. +...+++.|+|||||.|..+..+++.+.+|+++|.++..++.++++...++..+++++++.
T Consensus        18 ~~i~~~-~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~   84 (285)
T 1zq9_A           18 NSIIDK-AALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG   84 (285)
T ss_dssp             HHHHHH-TCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred             HHHHHh-cCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc
Confidence            344443 3345778999999999999999998889999999999999999998875554346666654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.81  E-value=6.4e-05  Score=67.72  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .....++..+....+...|+||||+.|+.++++++.   +++|+++|.++..++..++++..+++.+++++
T Consensus        65 ~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~  135 (247)
T 1sui_A           65 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDF  135 (247)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEE
T ss_pred             HHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEE
Confidence            334455555554446689999999999999999873   68999999999999999999887765444544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=97.79  E-value=7.1e-05  Score=67.93  Aligned_cols=57  Identities=18%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++..|+|||||.|.++..+++.|.+|+++|+++..++..++++..+++.++++++..
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  124 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHC  124 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEES
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEc
Confidence            467999999999999999998899999999999999999999887665455665544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.79  E-value=8.4e-05  Score=68.51  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=57.1

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .|+.+..++.++..+. ..++..|+|+|||.|..++.+++. +++|+++|.++..++..++|...+++.++++++.
T Consensus       105 r~~te~lv~~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~  179 (284)
T 1nv8_A          105 RPETEELVELALELIR-KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK  179 (284)
T ss_dssp             CTTHHHHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             ChhHHHHHHHHHHHhc-ccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            3555554555555442 125579999999999999999875 7999999999999999999999888755566654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.79  E-value=2.1e-05  Score=70.67  Aligned_cols=70  Identities=7%  Similarity=0.022  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .....++..++...+...|+|||||.|..++++++   .+++|+++|.+|..++..++++..+++.++++++.
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~  118 (242)
T 3r3h_A           46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL  118 (242)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            34445555555434568999999999999999997   26899999999999999999998887766677654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.79  E-value=5.7e-05  Score=71.28  Aligned_cols=55  Identities=18%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++..|+|+|||.|.+++. ++.+.+|+++|.+|..++.+++|++.|++.++++++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~  248 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI  248 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            3678999999999999999 885679999999999999999999999875455543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.79  E-value=8.8e-05  Score=65.83  Aligned_cols=66  Identities=14%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ..++..++...++..|+|||||.|..+..+++.   +++|+++|.++...+..++++..++..+++++.
T Consensus        49 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~  117 (239)
T 2hnk_A           49 GQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLK  117 (239)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             HHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE
Confidence            344444443346789999999999999999874   689999999999999999998877654445543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=97.78  E-value=7.5e-05  Score=64.91  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +...+...++..|+|||||.|.++..+++.+  .+|+++|+++..++..++++..+++
T Consensus        21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~   78 (219)
T 3jwg_A           21 VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRL   78 (219)
T ss_dssp             HHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGS
T ss_pred             HHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcc
Confidence            3333333467899999999999999999865  7999999999999999999877665

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.78  E-value=6.7e-05  Score=65.25  Aligned_cols=63  Identities=10%  Similarity=0.023  Sum_probs=49.2

Q ss_pred             CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ........+.+++..+. ..++..|+|+|||.|..+.++++.|++|+++|.++.+++..++...
T Consensus         3 ~~~~~~~~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~   65 (203)
T 1pjz_A            3 HQSEVNKDLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERG   65 (203)
T ss_dssp             CCSSSTHHHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC
T ss_pred             CcccCCHHHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHcc
Confidence            33444444555665542 3467899999999999999999889999999999999999887643

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.78  E-value=6.8e-05  Score=71.83  Aligned_cols=72  Identities=22%  Similarity=0.233  Sum_probs=58.4

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC--cceEEEEe
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR--IGNITFHK  202 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~--~g~~~~~~  202 (321)
                      ...++.+|+|||||.|..++.+++.|+ +|+++|++ ..++..++++..|++.++++++..-+-+-  .+...+..
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv  134 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVII  134 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEE
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEE
Confidence            335789999999999999999999886 99999999 89999999999999877788887655332  24455544

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=97.77  E-value=9.8e-05  Score=62.67  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +...++..|+|||||.|.++..+++.|++|+++|+++...+..+++...++. +++++
T Consensus        28 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~   84 (199)
T 2xvm_A           28 VKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL-DNLHT   84 (199)
T ss_dssp             TTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEE
T ss_pred             hhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC-CCcEE
Confidence            3334678999999999999999998899999999999999999998876665 34444

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.76  E-value=0.00014  Score=62.70  Aligned_cols=56  Identities=25%  Similarity=0.244  Sum_probs=47.0

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +.+....  .++..++|||||.|.++..+++.+ .+|+++|.++..++..++++..++.
T Consensus        52 ~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  108 (205)
T 3grz_A           52 LGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI  108 (205)
T ss_dssp             HHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3344443  467899999999999999998876 4999999999999999999887775

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.76  E-value=8.9e-05  Score=68.55  Aligned_cols=59  Identities=20%  Similarity=0.101  Sum_probs=50.9

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..|+|||||.|.++..+++. |++|+++|+++...+..+++...+++.++++++..
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  174 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC  174 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            457899999999999999999886 89999999999999999999988877556665443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.76  E-value=8.2e-05  Score=64.00  Aligned_cols=71  Identities=8%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             CchhHHHHHHHHHHhcCC--CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          115 PDISVTIQEILEKMKKEG--KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~--~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      |..+...+.++..+....  ++..++|||||.|..+..+++.  +.+|+++|+++...+.++++...++.. ++++
T Consensus        45 ~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~  119 (207)
T 1jsx_A           45 DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEP  119 (207)
T ss_dssp             ---CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEE
T ss_pred             CHHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEE
Confidence            333333444455443211  4689999999999999999873  689999999999999999998877653 3444

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.75  E-value=0.00011  Score=65.51  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +-..+...++..|+|+|||.|.++..+++.   +++|+++|.++..++..+++++.+++.+++++
T Consensus        85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~  149 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI  149 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEE
T ss_pred             HHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEE
Confidence            333445567899999999999999999875   68999999999999999999988776444544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.75  E-value=0.00011  Score=69.50  Aligned_cols=70  Identities=26%  Similarity=0.241  Sum_probs=55.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC--cceEEEEe
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR--IGNITFHK  202 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~--~g~~~~~~  202 (321)
                      .++.+|+|||||.|..+..+++.| .+|+++|+++ ..+..+++++.|++.++++++..-+.+-  .+...+..
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Iv  121 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIII  121 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEE
Confidence            477899999999999999999876 5999999997 7788889988888877888876654332  23444444

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.74  E-value=4.2e-05  Score=69.35  Aligned_cols=68  Identities=22%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh---cCCCCceEEEEEeE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF---NRVGDLVTVYEAAV  191 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l---N~~~~~v~~~~~Al  191 (321)
                      +|..++...++..|+|+|||.|..++.+++.  +.+|+++|.++..++..++|+..   |++.+++++++.-+
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~   99 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV   99 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH
Confidence            4566665557789999999999999999874  57999999999999999999998   87755677765433

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.74  E-value=7e-05  Score=69.55  Aligned_cols=66  Identities=14%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.++.. +...++..|+|||||.|..+..+++.+.+|+++|.++..++.++++...++. +++++++.
T Consensus        32 ~~i~~~-~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~   97 (299)
T 2h1r_A           32 DKIIYA-AKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEG   97 (299)
T ss_dssp             HHHHHH-HCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC---
T ss_pred             HHHHHh-cCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEEC
Confidence            344433 3445788999999999999999998889999999999999999999876665 46666554

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.73  E-value=0.00012  Score=67.06  Aligned_cols=59  Identities=10%  Similarity=-0.096  Sum_probs=50.8

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..|+|||||.|..+..+++. |.+|+++|+++..++..+++...+++..++++...
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  129 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ  129 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            357889999999999999999885 89999999999999999999887777556666544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.73  E-value=6.5e-05  Score=66.70  Aligned_cols=65  Identities=11%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .+++..+....++..|+||||+.|+.+.++++.   +++|+++|+++..++..++++..+++.+++++
T Consensus        61 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~  128 (232)
T 3cbg_A           61 AQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISL  128 (232)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             HHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            344444443335689999999999999999973   68999999999999999999887766444554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.72  E-value=0.00014  Score=65.69  Aligned_cols=56  Identities=21%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +.+....  .++..|+|+|||.|..+..+++.|.+|+++|.+|..++..++|...|+.
T Consensus       112 ~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~  167 (254)
T 2nxc_A          112 KALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV  167 (254)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC
T ss_pred             HHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            3444443  4678999999999999999999888999999999999999999988875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.72  E-value=0.00018  Score=61.95  Aligned_cols=49  Identities=22%  Similarity=0.297  Sum_probs=43.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..|+|+|||.|.++..+++.|. +|+++|.++..++..++|...+++
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   97 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG   97 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4678999999999999999998764 799999999999999999887764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.72  E-value=9.7e-05  Score=67.30  Aligned_cols=64  Identities=14%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.++.. +...+++.|+|||||.|..|..+++.+.+|+++|.++..++.+++++..   .+++++++.
T Consensus        19 ~~iv~~-~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~   82 (255)
T 3tqs_A           19 QKIVSA-IHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQN   82 (255)
T ss_dssp             HHHHHH-HCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT---CTTEEEEES
T ss_pred             HHHHHh-cCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEc
Confidence            344443 3445789999999999999999999889999999999999999988753   246776654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.71  E-value=8.1e-05  Score=64.85  Aligned_cols=56  Identities=18%  Similarity=0.101  Sum_probs=47.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++.+++|||||.|.++..+++.  +++|+++|.++..++..+++...+++ ++++++.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~   97 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLW   97 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEe
Confidence            35789999999999999998873  68999999999999999999887776 4566543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.71  E-value=0.00011  Score=62.84  Aligned_cols=55  Identities=20%  Similarity=0.123  Sum_probs=46.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .++.+|+|+|||.|..+..+++.   +++|+++|.++..++..++++..+++.+++++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~   78 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTL   78 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEE
Confidence            46789999999999999998873   37999999999999999999987765444444

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.71  E-value=0.00011  Score=71.67  Aligned_cols=58  Identities=17%  Similarity=0.105  Sum_probs=49.6

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .+...++..++|+|||.|.+++.+++.+.+|+++|.++..++..++|...|++. ++++
T Consensus       281 ~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f  338 (433)
T 1uwv_A          281 WLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTF  338 (433)
T ss_dssp             HHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEE
T ss_pred             hhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Confidence            333446789999999999999999988899999999999999999999988763 4444

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=97.70  E-value=8.9e-05  Score=63.67  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +..|.+....+.++..+ ...+ ..|+|||||.|.++..+++. +.+|+++|+++...+..++++..++..++++++..
T Consensus        24 ~~~~~~~~~~~~~~~~~-~~~~-~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~  100 (219)
T 3dlc_A           24 LFAPIYPIIAENIINRF-GITA-GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG  100 (219)
T ss_dssp             TTTTHHHHHHHHHHHHH-CCCE-EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             hhccccHHHHHHHHHhc-CCCC-CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEc
Confidence            34455544445544444 3333 49999999999999999874 78999999999999999999887776556666543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.70  E-value=0.00036  Score=62.20  Aligned_cols=57  Identities=18%  Similarity=0.100  Sum_probs=49.4

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++..++|+|||.|..+..+++  .+++|+++|.++..++..++|+..|++.+++++++.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  123 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKV  123 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEc
Confidence            467999999999999988876  378999999999999999999998887666777654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.70  E-value=0.0001  Score=65.21  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=46.4

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++.+|+|||||.|.++..+|+  ++.+|+++|+++..++..+++...+++ .+++++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~   89 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVM   89 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEE
Confidence            678999999999999999987  368999999999999999999887776 345553

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00013  Score=66.77  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=54.0

Q ss_pred             chhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhc-CCCCceEEEEE
Q 020824          116 DISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFN-RVGDLVTVYEA  189 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~~~~  189 (321)
                      .+...+.+.+..+.. .++..|+|||||.|.++..+++   .+.+|+++|+++..++..+++...+ +...++++...
T Consensus        20 ~y~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~   96 (299)
T 3g5t_A           20 SYPSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS   96 (299)
T ss_dssp             CCCHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEEC
T ss_pred             CCCHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEc
Confidence            333334445555543 4789999999999999999994   5789999999999999999988765 22345665544

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.69  E-value=9.8e-05  Score=69.28  Aligned_cols=59  Identities=25%  Similarity=0.303  Sum_probs=50.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      .++.+|+|||||.|..++.+++.|. +|+++|.++ ..+..++++..|++.++++++..-+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~   96 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL   96 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECch
Confidence            3678999999999999999998875 999999995 8899999999898877888876644

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.68  E-value=6.2e-05  Score=66.97  Aligned_cols=54  Identities=15%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++..|+|||||.|..++.+++  .+++|+++|+++..++.++++...+++. +++++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~  125 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFC  125 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEE
Confidence            568999999999999999985  5789999999999999999998887763 45554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.67  E-value=0.00022  Score=64.00  Aligned_cols=60  Identities=18%  Similarity=0.150  Sum_probs=50.3

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...++..|+|||||.|.++..+++ .+++|+++|+++...+..+++...+++.+++++...
T Consensus        58 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  118 (273)
T 3bus_A           58 DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA  118 (273)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC
Confidence            335789999999999999999987 589999999999999999998887776556665443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.67  E-value=9e-05  Score=70.20  Aligned_cols=70  Identities=23%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC---cceEEEEe
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR---IGNITFHK  202 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~---~g~~~~~~  202 (321)
                      .++.+|+|||||.|.++..+++.|. +|+++|+++ .++..++++..|++.++++++..-+.+-   .+...+..
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEE
Confidence            3678999999999999999999875 999999995 9999999999898877788877655332   34555554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.66  E-value=0.0001  Score=64.63  Aligned_cols=55  Identities=15%  Similarity=0.111  Sum_probs=46.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++..++|||||.|.++..+++.  +++|+++|.++..++..+++...+++ .+++++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~   93 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLL   93 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEE
Confidence            36789999999999999999873  78999999999999999999887765 345543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.65  E-value=3.1e-05  Score=66.43  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=36.7

Q ss_pred             chhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          116 DISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      +.+..++.++..+....++..|+|+|||.|.++..+++.  +++|+++|.++..++..++++..++
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~   78 (215)
T 4dzr_A           13 DTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG   78 (215)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------
T ss_pred             cHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence            333334445554433257799999999999999999885  6799999999999999998877654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.65  E-value=0.00015  Score=69.70  Aligned_cols=63  Identities=14%  Similarity=-0.051  Sum_probs=51.6

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCC-ceEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGD-LVTVY  187 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~-~v~~~  187 (321)
                      .++...+  .++..|+|+|||.|.+++.+++.|+ +|+++|.++..++..++|.+.|++.+ +++++
T Consensus       204 ~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~  268 (385)
T 2b78_A          204 NELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLV  268 (385)
T ss_dssp             HHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEE
T ss_pred             HHHHHHh--cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEE
Confidence            3444443  3568999999999999999998775 89999999999999999999998743 45443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.65  E-value=0.0001  Score=64.49  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             CCCCEEEEECCC-CchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGAN-VGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn-~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..|+|+||| .|..++.+++. +++|+++|.++..++..++|+..|+.  +++++.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~  110 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVK  110 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEe
Confidence            467999999999 99999999986 89999999999999999999998875  455544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.65  E-value=0.00016  Score=63.53  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      |.....++.++..+.  .++..|+|||||.|.++..+++.|++|+++|+++...+..+++
T Consensus        32 ~~~~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           32 PDPELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             SCTTHHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence            444555566666555  4678999999999999999998899999999999999998876

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.64  E-value=8.3e-05  Score=64.40  Aligned_cols=57  Identities=14%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ....++...+...++..|+|||||.|.++..+++.+.+|+++|+++..++..+++..
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~   94 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTK   94 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcc
Confidence            455666666665678899999999999999999888899999999999999988765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.63  E-value=0.00014  Score=65.96  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++..|+|||||.|.++..+++.|.+|+++|+++..++..+++...++.  +++++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~  172 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTA  172 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEE
Confidence            678999999999999999999999999999999999999999887764  44443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.63  E-value=0.00012  Score=65.79  Aligned_cols=57  Identities=11%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+++.|+|||||.|..+..+++.+.+|+++|.++..++.++++....   +++++++.
T Consensus        27 ~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~   83 (244)
T 1qam_A           27 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNK   83 (244)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECC
T ss_pred             CCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEC
Confidence            3357789999999999999999988899999999999999999886521   35666544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.62  E-value=0.00026  Score=67.48  Aligned_cols=54  Identities=22%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .+..++|+|||.|.+++.+++.+.+|+++|.++..++..++|.+.|++ ++++++
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~  266 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQII  266 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEE
Confidence            357899999999999999998778999999999999999999999987 456554

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.62  E-value=5.9e-05  Score=68.70  Aligned_cols=66  Identities=23%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      |.+...+.+.|....  +.++.++|||||.|..+..+++.+.+|+++||++.+++..++       .+++++...
T Consensus        23 p~yp~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~   88 (257)
T 4hg2_A           23 PRYPRALFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR-------HPRVTYAVA   88 (257)
T ss_dssp             CCCCHHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC-------CTTEEEEEC
T ss_pred             CCcHHHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh-------cCCceeehh
Confidence            666555555565554  456899999999999999999999999999999988765432       145665544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.62  E-value=0.00024  Score=62.22  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=48.7

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .+...++..|+|||||.|..+..+++.+.+|+++|+++...+..+++...++   ++++...
T Consensus        65 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~  123 (231)
T 1vbf_A           65 ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILG  123 (231)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEES
T ss_pred             hcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEEC
Confidence            3344578899999999999999999888999999999999999998876543   4555544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.62  E-value=0.00015  Score=65.61  Aligned_cols=64  Identities=13%  Similarity=-0.002  Sum_probs=49.2

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      .|........+.+++..+....++..|+|+|||.|..+.++++.|++|+++|.++..++..++.
T Consensus        46 ~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~  109 (252)
T 2gb4_A           46 SFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAE  109 (252)
T ss_dssp             TTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHh
Confidence            3433444444555555554334678999999999999999999999999999999999988654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.61  E-value=9.4e-05  Score=65.09  Aligned_cols=61  Identities=13%  Similarity=0.018  Sum_probs=47.4

Q ss_pred             chhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhc
Q 020824          116 DISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      .....+.+++....  .++..|+|||||.|.++..+++.|++|+++|+++..++..+++...+
T Consensus        51 ~~~~~l~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~  111 (235)
T 3lcc_A           51 RATPLIVHLVDTSS--LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSS  111 (235)
T ss_dssp             SCCHHHHHHHHTTC--SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHhcC--CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhcc
Confidence            33334445554432  23469999999999999999888999999999999999999887643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.60  E-value=0.00013  Score=66.87  Aligned_cols=57  Identities=19%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECC-ChHHHHHHHHhhhhcC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEP-VFENLQRICDGVWFNR  179 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP-~p~~~~~L~~n~~lN~  179 (321)
                      +++.......++..|+|||||.|..++.+++.|. +|+++|. ++...+..++|...|.
T Consensus        69 ~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~  127 (281)
T 3bzb_A           69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHT  127 (281)
T ss_dssp             HHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTC
T ss_pred             HHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhh
Confidence            3343333324678999999999999999998876 9999999 8999999999997663

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=97.60  E-value=0.00018  Score=62.95  Aligned_cols=63  Identities=13%  Similarity=-0.011  Sum_probs=47.6

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      |.+....+.++..+....++..|+|||||.|.++..+++.  +.+|+++|+++..++..+++...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~   90 (234)
T 3dtn_A           26 PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG   90 (234)
T ss_dssp             TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred             cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc
Confidence            3344434444433332457799999999999999999874  78999999999999999887653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.60  E-value=0.00021  Score=63.02  Aligned_cols=59  Identities=19%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVT  185 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~  185 (321)
                      ..+...++..++|+|||.|..+..+++.+.+|+++|.++...+..+++.+.+++.++++
T Consensus        85 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~  143 (248)
T 2yvl_A           85 LKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVK  143 (248)
T ss_dssp             HHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEE
T ss_pred             HhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEE
Confidence            34444578999999999999999998778899999999999999999987766533444

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.60  E-value=0.00016  Score=70.00  Aligned_cols=58  Identities=22%  Similarity=0.211  Sum_probs=50.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      ..++..+.+  ++..|+|+|||.|.+++.+++.|++|+++|.++..++..++|++.|++.
T Consensus       205 r~~l~~~~~--~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~  262 (393)
T 4dmg_A          205 RRLFEAMVR--PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR  262 (393)
T ss_dssp             HHHHHTTCC--TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhc--CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence            344555442  4789999999999999999998988999999999999999999999874

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.60  E-value=0.00013  Score=65.84  Aligned_cols=57  Identities=7%  Similarity=0.068  Sum_probs=48.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++..|+|||||.|..++.++.  ++++|+++|+++..++.+++|+..+++. ++++++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~  137 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWG  137 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEEC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEEC
Confidence            3578999999999999999886  4689999999999999999999988874 4666543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.59  E-value=0.00024  Score=61.47  Aligned_cols=59  Identities=20%  Similarity=0.119  Sum_probs=48.0

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +...++..|+|||||.|..+..+++. |  .+|+++|+++...+..+++...++. +++++..
T Consensus        73 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~  134 (215)
T 2yxe_A           73 LDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIV  134 (215)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEE
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEE
Confidence            34457889999999999999999874 3  8999999999999999998876665 3455543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.58  E-value=0.00022  Score=66.42  Aligned_cols=64  Identities=13%  Similarity=0.022  Sum_probs=51.0

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++++.. +...+++.|+|||||.|..|..+++.+.+|+++|.++..++.+++++.  .. +++++++.
T Consensus        40 ~~Iv~~-l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~-~~v~vi~g  103 (295)
T 3gru_A           40 NKAVES-ANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LY-NNIEIIWG  103 (295)
T ss_dssp             HHHHHH-TTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HC-SSEEEEES
T ss_pred             HHHHHh-cCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cC-CCeEEEEC
Confidence            444443 334578999999999999999999888999999999999999999876  21 45666554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.57  E-value=0.00028  Score=64.09  Aligned_cols=71  Identities=11%  Similarity=0.260  Sum_probs=54.4

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .|+.+..++.++..+.  .++..|+|||||.|..+..+++  .+++|+++|.++...+..++|...+++. +++++
T Consensus        92 r~~te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~  164 (276)
T 2b3t_A           92 RPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHIL  164 (276)
T ss_dssp             CTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEE
T ss_pred             CchHHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEE
Confidence            3555554455555432  3568999999999999999986  3689999999999999999999887763 45543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=97.57  E-value=0.00019  Score=64.58  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +.+++.......++..|+|||||.|.++..+++.  +.+|+++|+++...+..+++...++. +++++..
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~   93 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQ   93 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEE
Confidence            3444544444467899999999999999999874  78999999999999999999887765 3454433

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.56  E-value=0.00027  Score=65.13  Aligned_cols=59  Identities=12%  Similarity=-0.017  Sum_probs=49.8

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..|+|||||.|.++..+++. |++|+++|+++...+..+++...+++.+++++...
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  147 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ  147 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            357889999999999999999875 89999999999999999998887666555666543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.56  E-value=0.0003  Score=63.68  Aligned_cols=59  Identities=15%  Similarity=0.029  Sum_probs=48.7

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..|+|||||.|.++..+++ .|.+|+++|+++...+..++++...+...++++...
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~  121 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA  121 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            35778999999999999999984 688999999999999999988876665455665443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.56  E-value=0.00019  Score=63.40  Aligned_cols=58  Identities=16%  Similarity=0.053  Sum_probs=48.3

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      +...++..|+|||||.|.++..+++.+ .+|+++|.++...+..+++...+++. ++++.
T Consensus        87 l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~  145 (235)
T 1jg1_A           87 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVI  145 (235)
T ss_dssp             HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             cCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEE
Confidence            344577899999999999999998854 89999999999999999998877653 45543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.55  E-value=0.00022  Score=65.63  Aligned_cols=63  Identities=19%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +++++..+ ...++ .|+|||||.|..|..+++.+++|+++|.++..++.+++++.    ..++++++.
T Consensus        36 ~~~Iv~~~-~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~   98 (271)
T 3fut_A           36 LRRIVEAA-RPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQ   98 (271)
T ss_dssp             HHHHHHHH-CCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT----TSSEEEEES
T ss_pred             HHHHHHhc-CCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC----CCCEEEEEC
Confidence            34444443 34567 99999999999999999989999999999999999998865    145666654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.55  E-value=0.00026  Score=68.09  Aligned_cols=61  Identities=18%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCC-CCceEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRV-GDLVTV  186 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~-~~~v~~  186 (321)
                      .++..+   .++..|+|+|||.|.+++.+++.| .+|+++|.++..++..++|...|++ .+++++
T Consensus       213 ~~l~~~---~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~  275 (396)
T 3c0k_A          213 LATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEF  275 (396)
T ss_dssp             HHHHHH---CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHh---hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEE
Confidence            344444   367899999999999999999986 5999999999999999999999986 434544

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.55  E-value=0.00014  Score=66.55  Aligned_cols=55  Identities=13%  Similarity=0.032  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +.++. .+...++..|+|||||.|..+..+++.|++|+++|+++.+++..+++...
T Consensus        35 ~~il~-~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           35 ENDIF-LENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             HHHHH-TTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS
T ss_pred             HHHHH-hcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh
Confidence            33443 33445789999999999999999999999999999999999999988653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.55  E-value=0.00035  Score=63.64  Aligned_cols=60  Identities=17%  Similarity=0.016  Sum_probs=50.4

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...++..|+|||||.|.++..+++. |++|+++|+++...+..+++...+++.+++++...
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  139 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG  139 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc
Confidence            4457899999999999999999875 89999999999999999988877776556666543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.54  E-value=0.00029  Score=65.75  Aligned_cols=62  Identities=16%  Similarity=-0.011  Sum_probs=50.6

Q ss_pred             HHhcCCCCCEEEEECCCCchHH-HHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          127 KMKKEGKNGLVVDVGANVGMAS-FAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~s-l~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .+++..++..|+|||||.|.++ +.+++ .|++|+++|.+|..++..+++++..++ +++++...
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~g  179 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITG  179 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEES
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEC
Confidence            3556678999999999988765 55666 689999999999999999999887776 67776543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.54  E-value=0.00035  Score=61.89  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=48.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .++..|+|||||.|.++..+++.|.+|+++|+++...+..+++...++.  +++++..-
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d   96 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGD   96 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECC
Confidence            3568999999999999999999899999999999999999998876653  46665543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=97.54  E-value=0.00026  Score=62.65  Aligned_cols=60  Identities=15%  Similarity=0.105  Sum_probs=50.0

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..++..|+|||||.|.++..+++.+.+|+++|+++...+..+++...++. +++++..
T Consensus        16 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~   75 (239)
T 1xxl_A           16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQ   75 (239)
T ss_dssp             HHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEE
T ss_pred             HhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEe
Confidence            34456789999999999999999998888999999999999999998877765 3555543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.53  E-value=0.00038  Score=60.84  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=42.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-------CEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-------FRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-------~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++..|+|||||.|..+..+++..       ++|+++|.++..++..+++...++
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  133 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK  133 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            467899999999999999998743       599999999999999999987665

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.52  E-value=0.00029  Score=62.48  Aligned_cols=67  Identities=15%  Similarity=0.196  Sum_probs=50.8

Q ss_pred             cCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhh
Q 020824          109 GKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +..+..+......+.++..+ ...++..|+|||||.|.++..+++. +++|+++|+++...+..+++..
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~   99 (266)
T 3ujc_A           32 GENYISSGGLEATKKILSDI-ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVS   99 (266)
T ss_dssp             CTTCCSTTHHHHHHHHTTTC-CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCC
T ss_pred             CCCccccchHHHHHHHHHhc-CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhh
Confidence            44455555444445544433 3457889999999999999999885 8999999999999999887654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.52  E-value=0.00039  Score=60.22  Aligned_cols=57  Identities=21%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .++..|+|||||.|.++..+++.+.+|+++|.+|..++..+++...++  .+++++..-
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d   93 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGD   93 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECC
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECc
Confidence            357899999999999999999888899999999999999999887665  456665543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.52  E-value=0.00014  Score=70.38  Aligned_cols=57  Identities=7%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cC-CEEEEECCChHHHHHHHHhhhhcCCCCc-eEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MG-FRVLSFEPVFENLQRICDGVWFNRVGDL-VTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~-v~~~~~  189 (321)
                      ++..|+|++||.|.+++.+++  .| .+|+++|-+|..++.+++|+++|++.++ +++++.
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~  112 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGM  112 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence            578999999999999999987  35 5899999999999999999999998655 777654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.52  E-value=0.00039  Score=61.67  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=52.2

Q ss_pred             CchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhc-CCCCceEE
Q 020824          115 PDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFN-RVGDLVTV  186 (321)
Q Consensus       115 p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN-~~~~~v~~  186 (321)
                      +.+......++. .+...++..|+|+|||.|.++..+++.   +++|+++|.++..++..++++..+ + .+++++
T Consensus        79 ~~~~~~~~~~~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~  152 (258)
T 2pwy_A           79 PTYPKDASAMVT-LLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRF  152 (258)
T ss_dssp             CCCHHHHHHHHH-HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEE
T ss_pred             cccchHHHHHHH-HcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEE
Confidence            333333444444 344457899999999999999999874   689999999999999999998766 5 234443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=97.51  E-value=0.0003  Score=62.79  Aligned_cols=64  Identities=19%  Similarity=0.080  Sum_probs=50.7

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..+ ...++..|+|||||.|.++..+++.+.+|+++|+++...+..+++...++. +++++..
T Consensus        28 ~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~   91 (260)
T 1vl5_A           28 KLMQIA-ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQ   91 (260)
T ss_dssp             HHHHHH-TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred             HHHHHh-CCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEE
Confidence            344433 345789999999999999999998878999999999999999988876665 3555543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.50  E-value=0.0003  Score=64.13  Aligned_cols=63  Identities=10%  Similarity=-0.004  Sum_probs=51.7

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHH--cC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAV--MG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +..++...++..|+|+|||.|..+..+++  .+ ++|+++|.++...+.+++|+..+++. ++++.+
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~  140 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIIN  140 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEe
Confidence            34455556789999999999999998886  45 89999999999999999999888763 565544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.50  E-value=0.00033  Score=61.58  Aligned_cols=55  Identities=4%  Similarity=-0.095  Sum_probs=48.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++.+.|+|+|||.|..++.++.  ++.+|+|+|-++.+++..++|.+.|+...++++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~  104 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF  104 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE
Confidence            4578999999999999999986  478999999999999999999999887545655

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.49  E-value=0.00031  Score=60.35  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=43.0

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~  173 (321)
                      .++..+....++..|+|||||.|.++..+++.|.+|+++|+++...+..++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence            444444444577899999999999999999889999999999999998876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.48  E-value=0.00023  Score=63.48  Aligned_cols=57  Identities=14%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhc--------CCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFN--------RVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN--------~~~~~v~~~~~  189 (321)
                      .++..|+|||||.|.+++.+++.  +.+|+++|.++..++..++++..+        ++ .+++++..
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~  114 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRG  114 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEEC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEec
Confidence            36789999999999999999874  479999999999999999988776        54 35665543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.47  E-value=0.00018  Score=69.09  Aligned_cols=63  Identities=22%  Similarity=0.208  Sum_probs=51.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++..+.  .++..|+|+|||.|.+++.+++.|+ +|+++|.++..++..++|...|++.++++++
T Consensus       209 ~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~  272 (396)
T 2as0_A          209 LALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI  272 (396)
T ss_dssp             HHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             HHHHHHh--hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence            3444443  2678999999999999999998864 9999999999999999999999874355543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.47  E-value=0.00036  Score=68.10  Aligned_cols=49  Identities=22%  Similarity=0.213  Sum_probs=45.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..++|+|||.|.+++.+++.+.+|+++|.++..++..++|...|++
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl  337 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV  337 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999889999999999999999999998875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.45  E-value=0.00024  Score=61.42  Aligned_cols=62  Identities=19%  Similarity=0.107  Sum_probs=49.2

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .++..+ ...++..|+|||||.|.++..+++.+   .+|+++|+++...+..+++...++.. ++++
T Consensus        28 ~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~   92 (219)
T 3dh0_A           28 KVLKEF-GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEV   92 (219)
T ss_dssp             HHHHHH-TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEE
T ss_pred             HHHHHh-CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence            344433 34577899999999999999998743   89999999999999999998877653 4544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.45  E-value=0.0003  Score=63.09  Aligned_cols=59  Identities=19%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChH------HHHHHHHhhhhcCCCCceEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFE------NLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~------~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ...++..|+|||||.|.++..+++. |  ++|+++|+++.      .++..++++..+++.+++++..
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~  107 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF  107 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence            3457899999999999999999875 4  89999999997      8888888887666544555543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.45  E-value=0.00031  Score=67.59  Aligned_cols=48  Identities=25%  Similarity=0.373  Sum_probs=45.1

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..|+|+|||.|.++..+++.|++|+++|.++..++..++|+..|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~  280 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL  280 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            678999999999999999999899999999999999999999998875

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.45  E-value=0.00036  Score=69.14  Aligned_cols=70  Identities=26%  Similarity=0.241  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC--cceEEEEe
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR--IGNITFHK  202 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~--~g~~~~~~  202 (321)
                      .++.+|+|||||.|..++.+++.| .+|+++|.++ .++..++++..|++.++++++..-+-+-  .+...+..
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Iv  229 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIII  229 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEE
Confidence            467899999999999999998876 5999999998 8899999999898877888877654331  24445444

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=97.45  E-value=0.0004  Score=60.28  Aligned_cols=49  Identities=16%  Similarity=0.234  Sum_probs=44.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..|+|||||.|.++..+++.|.+|+++|+++..++..+++...++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~   77 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGL   77 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC
Confidence            3678999999999999999999899999999999999999988775554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.44  E-value=0.00032  Score=59.94  Aligned_cols=47  Identities=11%  Similarity=0.085  Sum_probs=42.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++ .|+|||||.|.++..+++.|.+|+++|+++..++..+++...++
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   75 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKG   75 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC
Confidence            355 99999999999999999889999999999999999998876554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.44  E-value=0.00036  Score=63.26  Aligned_cols=58  Identities=17%  Similarity=0.084  Sum_probs=47.3

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVT  185 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~  185 (321)
                      .+...++..|+|+|||.|..+..+++.   +++|+++|.++..++..++|+..+++.++++
T Consensus       107 ~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~  167 (277)
T 1o54_A          107 MLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVT  167 (277)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred             HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEE
Confidence            344457889999999999999999874   5899999999999999999988765433333

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.43  E-value=0.00035  Score=65.01  Aligned_cols=63  Identities=14%  Similarity=-0.063  Sum_probs=51.1

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      .+...++..|+|||||.|..+..+++.+   ++|+++|.++..++..++++..+++. ++++...-+
T Consensus        70 ~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~  135 (317)
T 1dl5_A           70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDG  135 (317)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG
T ss_pred             hcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECCh
Confidence            3344578999999999999999998743   56999999999999999999888763 477665433

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.41  E-value=7.1e-05  Score=68.46  Aligned_cols=49  Identities=27%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             HhcCCCC--CEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          128 MKKEGKN--GLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       128 ~~~~~~~--~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .+...++  .+|+|+|||.|..++.++..|++|++||.+|..++.+++|++
T Consensus        81 al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~  131 (258)
T 2oyr_A           81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLA  131 (258)
T ss_dssp             HTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHH
T ss_pred             HhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            3433345  899999999999999999889999999999988777777754

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.40  E-value=0.00038  Score=64.98  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=53.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      ++++..+ ...++.+|+|+|||.|.++..+++.  +++|+++|.+|..++..++|...++  .++++++.-.
T Consensus        16 ~e~l~~L-~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~   84 (301)
T 1m6y_A           16 REVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSY   84 (301)
T ss_dssp             HHHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCG
T ss_pred             HHHHHhc-CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCH
Confidence            3444433 3357899999999999999999874  6899999999999999999988775  4677766543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.40  E-value=0.00024  Score=69.15  Aligned_cols=58  Identities=14%  Similarity=0.052  Sum_probs=51.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhc--CCCCceEEEEEeE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFN--RVGDLVTVYEAAV  191 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN--~~~~~v~~~~~Al  191 (321)
                      ++..|+|+|||.|..++.+++.+.+|+++|.+|..++..++|...+  ++ +++++++.-+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da  152 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDF  152 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCG
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcH
Confidence            4789999999999999999998999999999999999999999987  76 6788777643

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.40  E-value=0.00045  Score=59.15  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=46.8

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHH-HHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMAS-FAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~s-l~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ++..+....++..|+|||||.|..+ ..+++.|.+|+++|+++...+..+++...++  .++++..
T Consensus        14 ~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~   77 (209)
T 2p8j_A           14 FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISK   77 (209)
T ss_dssp             HHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEE
T ss_pred             HHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEE
Confidence            3433333356789999999999974 4556688999999999999999998876554  2455443

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.39  E-value=0.00029  Score=64.51  Aligned_cols=71  Identities=17%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC--CceEEEEEeE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG--DLVTVYEAAV  191 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~--~~v~~~~~Al  191 (321)
                      .....++..+.  .++..|+|||||.|.++..+++.|.+|+++|+++..++..+++...++..  .+++++..-+
T Consensus        70 ~~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~  142 (299)
T 3g2m_A           70 SEAREFATRTG--PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM  142 (299)
T ss_dssp             HHHHHHHHHHC--CCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT
T ss_pred             HHHHHHHHhhC--CCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch
Confidence            33445555443  23459999999999999999998999999999999999999987755421  3566655433

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.39  E-value=0.00018  Score=63.88  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHH----HHHHHhhhhcCCCCceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENL----QRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~----~~L~~n~~lN~~~~~v~~  186 (321)
                      .++.+|+|||||.|.++..+++  ++++|+++|++|..+    +..+++...+++ .++.+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~   82 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVF   82 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEE
Confidence            3678999999999999999984  578999999996555    444666655554 34444

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.38  E-value=0.00047  Score=60.29  Aligned_cols=55  Identities=7%  Similarity=-0.128  Sum_probs=46.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++..|+|||||.|.++..+++.|.+|+++|+++..++..+++...++.  ++++...
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~   91 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQ   91 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEec
Confidence            678999999999999999998899999999999999999988775543  4555443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.38  E-value=0.00041  Score=62.99  Aligned_cols=52  Identities=15%  Similarity=-0.027  Sum_probs=44.8

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhc-C
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFN-R  179 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN-~  179 (321)
                      .+...++..|+|+|||.|..+..+++.   +.+|+++|.++..++..+++...+ +
T Consensus       105 ~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g  160 (275)
T 1yb2_A          105 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD  160 (275)
T ss_dssp             -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC
T ss_pred             HcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            344467899999999999999999874   689999999999999999998766 5

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.38  E-value=0.00031  Score=67.14  Aligned_cols=68  Identities=16%  Similarity=0.163  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC--EEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF--RVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~--~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .+...+-.+. ..++..++|+|||.|.+++.+++.+.  +|+++|.++..++..++|+..+++.+++++..
T Consensus       205 ~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~  274 (373)
T 3tm4_A          205 SIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ  274 (373)
T ss_dssp             HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred             HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            3433333343 45789999999999999999998765  99999999999999999999888754555533

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.38  E-value=0.00046  Score=60.90  Aligned_cols=53  Identities=11%  Similarity=0.023  Sum_probs=43.6

Q ss_pred             HHHHHHhc-CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          123 EILEKMKK-EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       123 ~~L~~~~~-~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +.+..+.. ..++..|+|||||.|.++..+++.+.+|+++|+++..++..+++.
T Consensus        45 ~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~   98 (245)
T 3ggd_A           45 VDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN   98 (245)
T ss_dssp             HHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS
T ss_pred             HHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC
Confidence            33444432 246789999999999999999998889999999999999998765

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.38  E-value=0.00071  Score=61.01  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhc
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      ..++. .+...++..|+|+|||.|..+..+++.   +.+|+++|.++..++..+++++.+
T Consensus        89 ~~i~~-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  147 (280)
T 1i9g_A           89 AQIVH-EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC  147 (280)
T ss_dssp             HHHHH-HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             HHHHH-HcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            33333 334457889999999999999999873   689999999999999999998766

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.37  E-value=0.00032  Score=67.27  Aligned_cols=70  Identities=14%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      .|.........+.++.. +...++..|+|+|||.|.+++.+++.  +.+|+++|.++..++..++|...|++.
T Consensus       201 ~Fs~~~~d~~~~~ll~~-l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~  272 (375)
T 4dcm_A          201 VFSRTGLDIGARFFMQH-LPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE  272 (375)
T ss_dssp             CTTCSSCCHHHHHHHHT-CCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG
T ss_pred             cccCCcccHHHHHHHHh-CcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC
Confidence            44443333333334443 33345689999999999999999985  689999999999999999999988764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.37  E-value=0.00044  Score=61.56  Aligned_cols=54  Identities=20%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      +...+. .+|+.|+|||||.|..+.++++. +.+|+++|++|..++..+++.+.++
T Consensus        53 ~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~  107 (236)
T 3orh_A           53 LAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT  107 (236)
T ss_dssp             HHHHHT-TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS
T ss_pred             HHHhhc-cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC
Confidence            333433 47899999999999999998875 5789999999999999998876544

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.36  E-value=0.00053  Score=62.37  Aligned_cols=58  Identities=14%  Similarity=0.084  Sum_probs=47.3

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      ..++..+....++..|+|||||.|.++..+++.   +++|+++|++|...+..+++...++
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~   71 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP   71 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            344555555567899999999999999999874   5899999999999999998876543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.35  E-value=0.00038  Score=61.36  Aligned_cols=46  Identities=15%  Similarity=0.130  Sum_probs=40.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .++..|+|+|||.|.++..+++. | ++|+++|.++..++.++++...
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~  120 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE  120 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc
Confidence            46789999999999999999874 5 7999999999999999887653

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.35  E-value=0.00053  Score=60.10  Aligned_cols=51  Identities=18%  Similarity=0.285  Sum_probs=43.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      ...+...+  .++..|+|||||.|.++..+++.|++|+++|+++...+..+++
T Consensus        44 ~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   94 (242)
T 3l8d_A           44 IPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKER   94 (242)
T ss_dssp             HHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTT
T ss_pred             HHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence            34455555  3678999999999999999999899999999999999998765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.35  E-value=0.00056  Score=60.64  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++..|+|||||.|.++..+++.+.+|+++|+++...+..+++. .+. ..++++...
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~-~~~~~~~~~   93 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV-DRKVQVVQA   93 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS-CTTEEEEES
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc-CCceEEEEc
Confidence            56789999999999999999988999999999999999998876 222 245555443

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.32  E-value=0.00074  Score=59.56  Aligned_cols=48  Identities=21%  Similarity=0.081  Sum_probs=41.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++..|+|||||.|..+..+++.+ .+|+++|+++..++..+++...++
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~  107 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT  107 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC
Confidence            467899999999999999998755 499999999999999998776443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.31  E-value=0.00064  Score=56.97  Aligned_cols=52  Identities=13%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .+++..++  .++..|+|||||.|.++..+++.+.+|+++|+++..++..+++.
T Consensus        37 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~   88 (195)
T 3cgg_A           37 ARLIDAMA--PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF   88 (195)
T ss_dssp             HHHHHHHS--CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHhc--cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC
Confidence            34566665  46789999999999999999988999999999999999988764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.30  E-value=0.00046  Score=62.58  Aligned_cols=56  Identities=21%  Similarity=0.264  Sum_probs=46.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +.+.+...+...++..|+|||||.|.++..+++.|.+|+++|+++...+..+++..
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~  100 (293)
T 3thr_A           45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW  100 (293)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhh
Confidence            34445555544467899999999999999999999999999999999999988764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.28  E-value=0.00075  Score=60.94  Aligned_cols=58  Identities=10%  Similarity=-0.000  Sum_probs=47.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++..|+|||||.|.++..+++.|. +|+++|+++...+..+++...++...++++...
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  121 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ  121 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEEC
Confidence            4678999999999999998887664 999999999999999998876655445555444

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.28  E-value=0.00069  Score=59.21  Aligned_cols=46  Identities=13%  Similarity=0.033  Sum_probs=40.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .++.+|+|+|||.|.++..+++.   +++|+++|.++..++.++++...
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~  120 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE  120 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc
Confidence            46789999999999999999863   38999999999999998887653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.28  E-value=0.00076  Score=69.90  Aligned_cols=64  Identities=14%  Similarity=0.139  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC-CceEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG-DLVTVYE  188 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~~~  188 (321)
                      ..++..+.   ++..|+|+|||.|.+++.+++.|+ +|+++|.++..++..++|+++|++. .++++++
T Consensus       531 r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~  596 (703)
T 3v97_A          531 RRMLGQMS---KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQ  596 (703)
T ss_dssp             HHHHHHHC---TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEE
T ss_pred             HHHHHHhc---CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe
Confidence            34455443   578999999999999999998775 6999999999999999999999875 3555543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.27  E-value=0.00085  Score=64.47  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             cCCCCCCchhHHHHH---HHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhhc
Q 020824          109 GKPFRKPDISVTIQE---ILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~---~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      .+.|..|.....-+.   ++.. .   ++.+|+|+|||.|..++.+++. + .+|+++|-++..++.+++|++.|
T Consensus        24 ~~~F~np~~~~nr~l~~~~l~~-~---~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n   94 (378)
T 2dul_A           24 SPVFYNPRMALNRDIVVVLLNI-L---NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLN   94 (378)
T ss_dssp             -CCCCCGGGHHHHHHHHHHHHH-H---CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCceeCCchHHHHHHHHHHHHH-c---CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            467777766432222   2232 2   5689999999999999999874 4 68999999999999999999999

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.26  E-value=0.00088  Score=59.34  Aligned_cols=52  Identities=25%  Similarity=0.236  Sum_probs=43.6

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhh
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~  176 (321)
                      +..++...++..|+|||||.|.++..+++.|. +|+++|+++..++..+++..
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~   88 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT   88 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc
Confidence            33444444789999999999999999998876 99999999999999887654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.26  E-value=0.00096  Score=58.14  Aligned_cols=48  Identities=21%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++..|+|||||.|..+..+++. |  ++|+++|.++...+..+++...++
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~  126 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD  126 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc
Confidence            46789999999999999999874 4  799999999999999999887654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.26  E-value=0.0009  Score=62.39  Aligned_cols=62  Identities=16%  Similarity=-0.012  Sum_probs=50.7

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +...++...++..|+|+|||.|..+..+++ .  +++|+++|.++..++.+++|+..+++. ++++
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~  173 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVIL  173 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEE
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEE
Confidence            344455566889999999999999999986 3  389999999999999999999888763 4544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.26  E-value=0.00089  Score=57.32  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~  176 (321)
                      .++..|+|+|||.|.++..+++.|. +|+++|.++...+..++|..
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC
Confidence            4678999999999999999998774 79999999999999988753

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.26  E-value=0.00093  Score=58.44  Aligned_cols=53  Identities=25%  Similarity=0.113  Sum_probs=44.3

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhh
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~  176 (321)
                      .+..++...++..|+|||||.|.++..+++.|. +|+++|+++..++..+++..
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~   87 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP   87 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc
Confidence            344455445778999999999999999998887 99999999999999887653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.26  E-value=0.00037  Score=60.47  Aligned_cols=43  Identities=19%  Similarity=0.300  Sum_probs=37.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..|+|||||.|.++..+++.  +++|+++|+++..++.+.++
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~   70 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAK   70 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHH
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            46789999999999999999885  78999999999987765433

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.25  E-value=0.00064  Score=62.69  Aligned_cols=62  Identities=13%  Similarity=0.215  Sum_probs=48.2

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCE----EEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFR----VLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~----ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.++..+ ...+++.|+|||||.|..|..+++.+.+    |+++|.++..++.++++.     ..++++++.
T Consensus        32 ~~iv~~~-~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~   97 (279)
T 3uzu_A           32 DAIVAAI-RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAG   97 (279)
T ss_dssp             HHHHHHH-CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEES
T ss_pred             HHHHHhc-CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEEC
Confidence            4444433 3457899999999999999999886666    999999999999999883     135666554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.24  E-value=0.00032  Score=67.10  Aligned_cols=49  Identities=20%  Similarity=0.206  Sum_probs=45.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      ++..|+|+|||.|.+++.+++.+.+|+++|.++..++..++|+..|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~  257 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG  257 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999877779999999999999999999999874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.24  E-value=0.00048  Score=60.77  Aligned_cols=43  Identities=12%  Similarity=0.029  Sum_probs=38.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..|+|||||.|.++..+++.|.+|+++|+++...+..+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh
Confidence            4678999999999999999988899999999999999887654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=97.23  E-value=0.00043  Score=63.65  Aligned_cols=58  Identities=12%  Similarity=0.012  Sum_probs=48.6

Q ss_pred             CCCCEEEEECCCCchHHHHHH--H-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAA--V-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a--~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++..|+|||||.|.++..++  . .+++|+++|.++..++..+++...+++.++++++..
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  177 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ  177 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC
Confidence            467999999999999999885  3 478999999999999999999887776555666554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.23  E-value=0.001  Score=56.76  Aligned_cols=54  Identities=15%  Similarity=0.121  Sum_probs=45.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~  176 (321)
                      +.+++...+  .++..|+|||||.|..+..+++.|. +|+++|.++..++..+++..
T Consensus        32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~   86 (215)
T 2pxx_A           32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA   86 (215)
T ss_dssp             HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc
Confidence            445555554  4678999999999999999998775 89999999999999988754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.23  E-value=0.00055  Score=64.58  Aligned_cols=69  Identities=12%  Similarity=0.028  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +.+...+-.+....++..++|+|||.|..++.++..+   .+|+++|.+|..++..++|+..+++. ++++.+
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~  260 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLR  260 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEe
Confidence            3344444445555678899999999999999998743   89999999999999999999988764 565543

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.22  E-value=0.00052  Score=62.12  Aligned_cols=62  Identities=16%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.++.. +...+++.|+|||||.|..+..+++.| .+|+++|.++..++.++++ .    ..++++++.
T Consensus        21 ~~iv~~-~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~   83 (249)
T 3ftd_A           21 KKIAEE-LNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINE   83 (249)
T ss_dssp             HHHHHH-TTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECS
T ss_pred             HHHHHh-cCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEc
Confidence            444443 334578899999999999999999885 8999999999999999876 2    235655543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.22  E-value=0.001  Score=62.22  Aligned_cols=63  Identities=14%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +..++...++..|+|+||+.|..|+.++. +  .++|+|+|.++..++.+++|++.+++ .++++++
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~  159 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAE  159 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence            34455556889999999999999999886 3  38999999999999999999998876 4566554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.21  E-value=0.00076  Score=58.07  Aligned_cols=44  Identities=16%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .++..|+|||||.|.++..+++.|++|+++|+++..++..+++.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc
Confidence            46789999999999999999998999999999999999988764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.21  E-value=0.00065  Score=59.31  Aligned_cols=52  Identities=10%  Similarity=0.031  Sum_probs=42.6

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      ++..+....++..|+|||||.|.++..+++.+.+|+++|+++...+..+++.
T Consensus        33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   84 (250)
T 2p7i_A           33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL   84 (250)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS
T ss_pred             HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhh
Confidence            3333333346678999999999999999988889999999999999988764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.21  E-value=0.00095  Score=57.66  Aligned_cols=53  Identities=23%  Similarity=0.268  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      ..++..+.. .++..|+|||||.|.++..+++.+++|+++|+++...+..+++.
T Consensus        35 ~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~   87 (220)
T 3hnr_A           35 EDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL   87 (220)
T ss_dssp             HHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHS
T ss_pred             HHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC
Confidence            344554443 36789999999999999999988999999999999999988764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.20  E-value=0.00081  Score=60.18  Aligned_cols=53  Identities=28%  Similarity=0.322  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +.+++..++.  ++..|+|||||.|.++..+++.|++|+++|+++...+..+++.
T Consensus        44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~   96 (260)
T 2avn_A           44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKG   96 (260)
T ss_dssp             HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhc
Confidence            3455555553  6789999999999999999988999999999999999988764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.19  E-value=0.0017  Score=60.67  Aligned_cols=47  Identities=21%  Similarity=0.180  Sum_probs=42.3

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHc-C--CEEEEECCChHHHHHHHHhhh
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVM-G--FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~-g--~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ...++.+|+|||||.|..+..+++. |  ++|+++|.+|..++..++|+.
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~  151 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK  151 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Confidence            4457899999999999999999874 5  899999999999999999987

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.19  E-value=0.00059  Score=58.34  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=38.2

Q ss_pred             CCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          134 NGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      +..|+|||||.|.++..+++.|.+|+++|+++...+..+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~   82 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT   82 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh
Confidence            68999999999999999999899999999999999988765

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.18  E-value=0.0004  Score=62.08  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHH
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICD  173 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~  173 (321)
                      +.+.+..+....++.+++|||||.|.++..+++.| .+|+++|+++..++..++
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~   78 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIR   78 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHH
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHH
Confidence            45566666433456799999999999999999888 499999999998887444

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.18  E-value=0.00075  Score=59.14  Aligned_cols=43  Identities=14%  Similarity=0.089  Sum_probs=36.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..|+|||||.|.++..+++.  +++|+++|.+|...+.+.+.
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~  100 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLEL  100 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHH
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH
Confidence            47789999999999999988874  37999999999987766554

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.17  E-value=0.00073  Score=61.31  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCE--EEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFR--VLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~--ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+++.|+|||||.|..|. +++ +.+  |+++|.++..++.++++...+   +++++++.
T Consensus        18 ~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~   74 (252)
T 1qyr_A           18 NPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQ   74 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECS
T ss_pred             CCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEEC
Confidence            34577899999999999999 655 566  999999999999999876532   35666554

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.16  E-value=0.0015  Score=57.50  Aligned_cols=65  Identities=20%  Similarity=0.149  Sum_probs=52.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCC--CCceEEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRV--GDLVTVYEA  189 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~--~~~v~~~~~  189 (321)
                      ..++|...+.  +...|++||+  |+-|+++|+. +++|+++|-+++.++..+++++.+++  .++|+++..
T Consensus        20 ~~~~L~~~l~--~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~g   87 (202)
T 3cvo_A           20 EAEALRMAYE--EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWT   87 (202)
T ss_dssp             HHHHHHHHHH--HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEEC
T ss_pred             HHHHHHHHhh--CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence            3445544443  3479999998  7889999985 79999999999999999999998887  667777664

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.16  E-value=0.0012  Score=58.04  Aligned_cols=47  Identities=13%  Similarity=-0.005  Sum_probs=39.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhc
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      .++.+++|+|||.|.++..+++.   +++|+++|.+|..++.+.++...|
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~  125 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR  125 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc
Confidence            46789999999999999999873   389999999999888887776543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.15  E-value=0.00037  Score=71.39  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             CCCEEEEECCCCchHHHHH---HHc-C--CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecC--cceEEEEe
Q 020824          133 KNGLVVDVGANVGMASFAA---AVM-G--FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDR--IGNITFHK  202 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~---a~~-g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~--~g~~~~~~  202 (321)
                      ++.+|+|||||.|..+..+   ++. +  .+|+|+|.+|.. ...++.+..|+++++|++++.=+-+-  +..+.+-+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence            4468999999999974444   433 3  379999999954 45566788899999999988654331  23455544

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.14  E-value=0.0008  Score=57.90  Aligned_cols=51  Identities=18%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..+.. .++..|+|||||.|.++..+++.|++|+++|+++..++..+++
T Consensus        43 ~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           43 AILLAILG-RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             HHHHHHHH-TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh
Confidence            34444443 3569999999999999999998899999999999999988765

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.14  E-value=0.00068  Score=62.21  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=39.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhc
Q 020824          133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      ++..|+|||||.|.+++.+++.  +.+|+++|.++..++..++++..+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~   93 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHY   93 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence            5789999999999999999874  689999999999999999887644

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.14  E-value=0.00079  Score=60.15  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=39.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .++..++|||||.|.++..+|+.  +.+|+++|.++..++..++++.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~   91 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIR   91 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH
Confidence            36689999999999999999873  6899999999999998887764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.12  E-value=0.00093  Score=59.63  Aligned_cols=44  Identities=20%  Similarity=-0.001  Sum_probs=39.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +++..|+|||||.|.++..+++.+.+|+++|+++...+..+++.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   92 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN   92 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC
Confidence            35689999999999999999988999999999999999988763

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=97.10  E-value=0.0011  Score=59.34  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHH
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRI  171 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L  171 (321)
                      +.+...+...++..|+|||||.|.++..+++.+++|+++|++|...+..
T Consensus        24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a   72 (261)
T 3ege_A           24 NAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQA   72 (261)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSS
T ss_pred             HHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            3344444445789999999999999999999999999999999776654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.10  E-value=0.0012  Score=57.89  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=41.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHH-cC-------CEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAV-MG-------FRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~-~g-------~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++..|+|||||.|..+..+++ .+       ++|+++|.++...+..++++..++
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  138 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD  138 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC
Confidence            4678999999999999999887 34       599999999999999999877554

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.10  E-value=0.00056  Score=60.35  Aligned_cols=57  Identities=14%  Similarity=0.061  Sum_probs=45.3

Q ss_pred             HHHHHHHhcC----CCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhc
Q 020824          122 QEILEKMKKE----GKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       122 ~~~L~~~~~~----~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      ..++..++..    .++..|+|||||.|.++..+++. +.+|+++|+++..++..+++...+
T Consensus        64 ~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~  125 (241)
T 2ex4_A           64 RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE  125 (241)
T ss_dssp             HHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc
Confidence            3455555432    25789999999999999998876 469999999999999999887644

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.09  E-value=0.0017  Score=56.79  Aligned_cols=62  Identities=15%  Similarity=0.127  Sum_probs=49.2

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .+...+  +++..|+|||||.|.++..+++. .+|+++|+++...+..+++...++  .++++...-
T Consensus        26 ~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d   87 (243)
T 3d2l_A           26 WVLEQV--EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQD   87 (243)
T ss_dssp             HHHHHS--CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECC
T ss_pred             HHHHHc--CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcC
Confidence            344444  35689999999999999999877 899999999999999998877654  356665543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.09  E-value=0.0023  Score=62.67  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHH-------HHhhhhcCCC-CceEEEEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRI-------CDGVWFNRVG-DLVTVYEA  189 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L-------~~n~~lN~~~-~~v~~~~~  189 (321)
                      +..++.. +...++.+|+|||||.|..++.+++. | .+|+++|.++..++..       ++++..+++. .+++++..
T Consensus       231 v~~ml~~-l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          231 LSDVYQQ-CQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHH-TTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHh-cCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            3444443 34457899999999999999999973 5 5899999999988877       7887777642 56776653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.06  E-value=0.00086  Score=57.91  Aligned_cols=47  Identities=13%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChH
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFE  166 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~  166 (321)
                      .+.+++..+.-..++.+|+|+|||.|.++..+++.+++|+++|.+|.
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~   58 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc
Confidence            34556665533357899999999999999999988999999999984

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.05  E-value=0.0012  Score=59.57  Aligned_cols=46  Identities=15%  Similarity=0.230  Sum_probs=40.9

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      ...++..|+|||||.|.++..+++.+++|+++|+++...+..+++.
T Consensus        54 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           54 NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC
Confidence            3457789999999999999999998999999999999999887653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.05  E-value=0.0013  Score=64.84  Aligned_cols=77  Identities=16%  Similarity=0.002  Sum_probs=57.9

Q ss_pred             hcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCce
Q 020824          108 KGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLV  184 (321)
Q Consensus       108 ~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v  184 (321)
                      ..+.|.-.+.+.   .++..++...++..|+|+||+.|..|+.++. +  +++|+|+|.++..++.+++|++.+++. ++
T Consensus        83 ~~G~~~vQd~ss---~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv  158 (456)
T 3m4x_A           83 QAGYEYSQEPSA---MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NA  158 (456)
T ss_dssp             HTTSCEECCTTT---HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SE
T ss_pred             hCCcEEEECHHH---HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ce
Confidence            345555333322   2344455566889999999999999998886 2  379999999999999999999988874 56


Q ss_pred             EEEE
Q 020824          185 TVYE  188 (321)
Q Consensus       185 ~~~~  188 (321)
                      ++.+
T Consensus       159 ~v~~  162 (456)
T 3m4x_A          159 IVTN  162 (456)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.04  E-value=0.00099  Score=68.73  Aligned_cols=75  Identities=11%  Similarity=0.042  Sum_probs=51.6

Q ss_pred             chhHHHHHHHHHHhcC-CCCCEEEEECCCCchHHHHH---HH-cC-----------CEEEEECCChHHHHHHHHhhhhcC
Q 020824          116 DISVTIQEILEKMKKE-GKNGLVVDVGANVGMASFAA---AV-MG-----------FRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~-~~~~~vvDIGAn~G~~sl~~---a~-~g-----------~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .|...+...+..+.+. .++.+|+|||||.|..+..+   ++ .|           .+|+|+|.+|..+..++.... |+
T Consensus       391 ~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng  469 (745)
T 3ua3_A          391 VYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT  469 (745)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT
T ss_pred             HHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC
Confidence            3444444444443321 23469999999999987533   32 22           399999999988888776665 99


Q ss_pred             CCCceEEEEEeE
Q 020824          180 VGDLVTVYEAAV  191 (321)
Q Consensus       180 ~~~~v~~~~~Al  191 (321)
                      ++++|++++.=+
T Consensus       470 ~~d~VtVI~gd~  481 (745)
T 3ua3_A          470 WKRRVTIIESDM  481 (745)
T ss_dssp             TTTCSEEEESCG
T ss_pred             CCCeEEEEeCch
Confidence            988899987544

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.02  E-value=0.00061  Score=56.53  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=39.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..++|||||.|.++..+++.+.+|+++|+++...+..+++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh
Confidence            4678999999999999999998767999999999999998876

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.97  E-value=0.0029  Score=56.80  Aligned_cols=44  Identities=14%  Similarity=0.003  Sum_probs=37.1

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHh
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n  174 (321)
                      ..++.+|+|+||+.|.++..+++.   .++|+|+|.+|...+.+.+.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~  120 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLV  120 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHH
Confidence            458899999999999999999862   47999999999987666543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.95  E-value=0.0016  Score=65.64  Aligned_cols=57  Identities=19%  Similarity=0.103  Sum_probs=46.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +++..|+|||||.|..|..+|+.|++|+++|+.+.+++..+.....++. -++.+...
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~  121 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-FAAEFRVG  121 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEEC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEEC
Confidence            3557999999999999999999999999999999999988776555542 24555444

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=96.94  E-value=0.0034  Score=59.00  Aligned_cols=57  Identities=14%  Similarity=0.049  Sum_probs=47.6

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..++..|+|||||.|.++..+++  ++.+++++|. |..++..++++..+++.+++++..
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~  246 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA  246 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEe
Confidence            35678999999999999999987  3689999999 999999999988776655566544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.92  E-value=0.0017  Score=56.58  Aligned_cols=52  Identities=10%  Similarity=0.003  Sum_probs=42.9

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .+++....  .++..|+|||||.|.++..+++.+.+|+++|+++...+..+++.
T Consensus        31 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           31 ADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             HHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC
Confidence            34444444  46789999999999999999887779999999999999988763

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.92  E-value=0.0019  Score=63.89  Aligned_cols=63  Identities=14%  Similarity=0.026  Sum_probs=51.5

Q ss_pred             HHHhcCC--CCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          126 EKMKKEG--KNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       126 ~~~~~~~--~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++...  ++..|+|+||+.|..|..+++ +  +++|+|+|.++..++.+++|++.+++ .++++.+.
T Consensus       108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~  175 (479)
T 2frx_A          108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHF  175 (479)
T ss_dssp             HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECC
T ss_pred             HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeC
Confidence            3344445  789999999999999999887 3  37999999999999999999998886 35665543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.89  E-value=0.0041  Score=60.65  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=50.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCC-EEEEECCChHHHHHHHHhh-------hhcCCC-CceEEEEEe
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGF-RVLSFEPVFENLQRICDGV-------WFNRVG-DLVTVYEAA  190 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~n~-------~lN~~~-~~v~~~~~A  190 (321)
                      +..++..+ ...++++|+|||||.|..++.+++ .|+ +|+++|-++..++..++++       ..+++. .++++++.=
T Consensus       162 i~~il~~l-~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          162 VAQMIDEI-KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHH-CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            45555543 446889999999999999999886 565 5999999998888777654       334442 466666543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.88  E-value=0.0013  Score=55.25  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=34.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHH
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQR  170 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~  170 (321)
                      .++..++|+|||.|.++..+++.+ +|+++|.++..++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~   59 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES   59 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc
Confidence            356799999999999999999988 99999999998877

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.88  E-value=0.0052  Score=52.85  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChH
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFE  166 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~  166 (321)
                      ++..+....++..|+|||||.|.++..+   +.+|+++|+++.
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~   97 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSI---RNPVHCFDLASL   97 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC
Confidence            4444443356789999999999988776   478999999987

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.86  E-value=0.0011  Score=61.72  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=40.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHH
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQR  170 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~  170 (321)
                      +..++..+.-..++.+++|||||.|.+|..+++.| .+|+|+|.++..++.
T Consensus        73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~  123 (291)
T 3hp7_A           73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVW  123 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCH
T ss_pred             HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            44556655333467899999999999999998887 599999999988776

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.85  E-value=0.0022  Score=56.44  Aligned_cols=45  Identities=18%  Similarity=0.088  Sum_probs=39.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .++..|+|||||.|.++..+++.+ .+|+++|+++..++..+++..
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~  137 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA  137 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhc
Confidence            467899999999999999888764 679999999999999988754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=96.85  E-value=0.00062  Score=60.76  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=33.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHc------CCEEEEECCChHHHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAVM------GFRVLSFEPVFENLQRI  171 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~------g~~ViafEP~p~~~~~L  171 (321)
                      ++..|+|||||.|..+..+++.      +++|+++|.+|..++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a  125 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP  125 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHH
Confidence            4579999999999999999874      68999999999875543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.84  E-value=0.003  Score=61.73  Aligned_cols=62  Identities=19%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c-C-CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M-G-FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~-g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..++...++..|+|+||+.|..+..++. . + ++|+++|.++...+.+++|+..+++ .++++
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~  314 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKP  314 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEE
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEE
Confidence            444555666889999999999999999987 3 4 7999999999999999999987776 34544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.82  E-value=0.0029  Score=62.50  Aligned_cols=63  Identities=16%  Similarity=0.038  Sum_probs=51.7

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ++..++...++..|+|+||+.|..|+.+++ +  +++|+|+|.++..++.+++|++.+++.  +++.+
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~  157 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQ  157 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEEC
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEE
Confidence            344455556889999999999999999986 3  279999999999999999999988863  65554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.81  E-value=0.0032  Score=66.28  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC---CEEEEECCChHHHHHHHHhhh
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG---FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g---~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +.|..|.....++.++..+. ..++..|+|||||.|.++..+++.+   ++|+++|+++..++..++++.
T Consensus       699 gtFsPPL~eqRle~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa  767 (950)
T 3htx_A          699 AFFKPPLSKQRVEYALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLH  767 (950)
T ss_dssp             CCSSSCHHHHHHHHHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhh
Confidence            33444433344444444443 3477999999999999999999876   799999999999999988654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.78  E-value=0.0038  Score=57.52  Aligned_cols=57  Identities=23%  Similarity=0.105  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +.+++++....  .++++|+|.+||.|..++.+++.|.+++++|.+|..++..++++..
T Consensus       223 ~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          223 ELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            33455555443  4789999999999999999999999999999999999999988764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=96.78  E-value=0.0047  Score=58.08  Aligned_cols=57  Identities=26%  Similarity=0.087  Sum_probs=47.3

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..++..|+|||||.|.++..+++.  +.+++++|. |..++..++++..+++.+++++..
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~  238 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE  238 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEe
Confidence            346789999999999999998873  689999999 999999999988776655666544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.77  E-value=0.00017  Score=64.58  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=45.7

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+++.|+|||||.|..+..+++.+.+|+++|.++..++.++++...   .+++++++.
T Consensus        26 ~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~   82 (245)
T 1yub_A           26 NLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQ   82 (245)
T ss_dssp             CCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCS
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---CCceEEEEC
Confidence            335678999999999999999998889999999999999888777541   235555444

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.71  E-value=0.0032  Score=60.33  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=39.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..|+|||||.|.++..+++.|.+|+++|+++...+..+++
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc
Confidence            4678999999999999999999999999999999999887654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=96.69  E-value=0.001  Score=59.85  Aligned_cols=56  Identities=16%  Similarity=0.088  Sum_probs=44.6

Q ss_pred             HHHHHHh--cCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhc
Q 020824          123 EILEKMK--KEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       123 ~~L~~~~--~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      +.+..++  ...++.+|+|||||.|.++.+++..|+ +|+++|.++.+++.+++++..+
T Consensus        43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~  101 (263)
T 2a14_A           43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE  101 (263)
T ss_dssp             HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC
Confidence            3444444  223678999999999999988888785 6999999999999999887644

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=96.67  E-value=0.0086  Score=56.65  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=47.4

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..+..+|+|||||.|.++..+++  ++.+++++|. |...+..++++...++.+++++..
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~  258 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILP  258 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEec
Confidence            35678999999999999998887  4689999999 999999999887766655666644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.66  E-value=0.0023  Score=58.10  Aligned_cols=57  Identities=7%  Similarity=-0.126  Sum_probs=47.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .+....+..++...|+|||||.|..++.+. .+.+++|+|-++..++.++++...|+.
T Consensus        95 ~fY~~i~~~~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~  151 (253)
T 3frh_A           95 TLYDFIFSAETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW  151 (253)
T ss_dssp             HHHHHHTSSCCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC
Confidence            344444444567899999999999999877 678999999999999999999888764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.64  E-value=0.0025  Score=56.64  Aligned_cols=46  Identities=9%  Similarity=-0.060  Sum_probs=40.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHc----CCEEEEECCChHHHHHHHHhhhhc
Q 020824          133 KNGLVVDVGANVGMASFAAAVM----GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~----g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      ++..|+|+|||.|.+++.+++.    +.+|+++|.++..++..++|+..+
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            5679999999999999988864    579999999999999999988755

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=96.63  E-value=0.003  Score=54.37  Aligned_cols=43  Identities=23%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..++|||||.|.++..+++.|.+|+++|+++...+..+++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~   73 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEK   73 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh
Confidence            4678999999999999999988789999999999998887754

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=96.63  E-value=0.0054  Score=57.22  Aligned_cols=55  Identities=11%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             CCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          134 NGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.+|+|||||.|.++..+++  ++.+++++|. |...+..++++..+++.+++++...
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~  236 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEK  236 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEEC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeC
Confidence            78999999999999998887  4689999999 9999999888776665455665443

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=96.62  E-value=0.0021  Score=60.44  Aligned_cols=69  Identities=23%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             CCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          111 PFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       111 ~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .|..+......+.++..+ ...++..|+|+|||.|..+..+++.+  ++|+++|.++..++..++++..|+.
T Consensus       175 vf~~~~~d~~~~~ll~~l-~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~  245 (343)
T 2pjd_A          175 VFSRDGLDVGSQLLLSTL-TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV  245 (343)
T ss_dssp             CTTSSSCCHHHHHHHHHS-CTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCcHHHHHHHHhc-CcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            444444443334444444 22356789999999999999998754  7999999999999999999987765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=96.59  E-value=0.0075  Score=56.41  Aligned_cols=58  Identities=21%  Similarity=0.058  Sum_probs=47.3

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..++..|+|||||.|.++..+++  ++.+++++|. |..++..++++..+++.+++++...
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~  240 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG  240 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeC
Confidence            34678999999999999998887  3589999999 9999999998887766556665443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.59  E-value=0.003  Score=59.29  Aligned_cols=70  Identities=14%  Similarity=0.020  Sum_probs=51.5

Q ss_pred             CCCCCchh-HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--C-----CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          111 PFRKPDIS-VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--G-----FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       111 ~~~~p~~~-~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g-----~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .|..|... ..+..++..+.+..++.+|+|+|||.|.+...+++.  .     .+++++|.+|..++..+.|+..++.
T Consensus       107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~  184 (344)
T 2f8l_A          107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ  184 (344)
T ss_dssp             GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC
Confidence            34455432 223444554434446789999999999999888762  1     7899999999999999999887765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.57  E-value=0.0056  Score=54.66  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..|+|||||.|.++..+++.  |++|+++|+++...+..+++
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~  128 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR  128 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh
Confidence            46789999999999999999874  78999999999999988765

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=96.57  E-value=0.0043  Score=53.16  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=40.3

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~  175 (321)
                      .+++..+..  ++..|+|||||.|.++..+   +. +|+++|+++...+..+++.
T Consensus        27 ~~~l~~~~~--~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           27 ERALKGLLP--PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHHHTTCC--CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHHhcC--CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC
Confidence            345555553  6789999999999998877   77 9999999999999888764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.54  E-value=0.0045  Score=58.89  Aligned_cols=52  Identities=13%  Similarity=0.035  Sum_probs=44.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..|+|+| |.|.++..+++.+  .+|+++|.+|..++..++|...+++. ++++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~  225 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEI  225 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEE
Confidence            578999999 9999999998764  69999999999999999999888763 4444

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.53  E-value=0.011  Score=53.81  Aligned_cols=54  Identities=15%  Similarity=-0.007  Sum_probs=41.9

Q ss_pred             CCCEEEEECCCC---chHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANV---GMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~---G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ....|+|||||.   |.++..+++  ++++|+++|.+|.+++..++++..+   .+++++..
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~  135 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTA  135 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEEC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEe
Confidence            447999999999   988777665  5799999999999999988876422   34555443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.51  E-value=0.0044  Score=59.52  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC----------------------------------------CEE
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG----------------------------------------FRV  158 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g----------------------------------------~~V  158 (321)
                      +.+...+-.+....++..++|.|||.|.+.+.++..+                                        .+|
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            3344444444544577899999999999999887642                                        479


Q ss_pred             EEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          159 LSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       159 iafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +++|-++..++..++|...|++.+++++.+
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~  290 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNV  290 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            999999999999999999988754555543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.50  E-value=0.004  Score=52.94  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc----CCEEEEECCCh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM----GFRVLSFEPVF  165 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~----g~~ViafEP~p  165 (321)
                      +.++++.+.-..++..|+|+|||.|.++..+++.    +++|+++|.++
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            3344444422246789999999999999999863    47999999999

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=96.49  E-value=0.0079  Score=56.78  Aligned_cols=55  Identities=11%  Similarity=0.013  Sum_probs=45.1

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +..+|+|||||.|.++..+++  ++.+++++|. |...+..++++...++.+++++..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~  235 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHG  235 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEE
Confidence            568999999999999999987  5789999998 999999998877655544555543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.49  E-value=0.0051  Score=59.64  Aligned_cols=58  Identities=12%  Similarity=0.033  Sum_probs=49.0

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .++..++...++..|+|+||+.|..+..+++.  +++|+++|.++..++.+++|+..++.
T Consensus       236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~  295 (429)
T 1sqg_A          236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM  295 (429)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC
Confidence            34445556668899999999999999999874  37999999999999999999987765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.49  E-value=0.0035  Score=55.36  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=42.2

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      .+++..+ ...++..|+|||||.|.++..+++.  +++|+++|+++...+..+++
T Consensus        23 ~~l~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~   76 (259)
T 2p35_A           23 RDLLAQV-PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR   76 (259)
T ss_dssp             HHHHTTC-CCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhc-CCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence            3444433 2346789999999999999999874  89999999999999998876

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.46  E-value=0.0092  Score=54.77  Aligned_cols=46  Identities=9%  Similarity=-0.069  Sum_probs=39.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhc
Q 020824          133 KNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      ++..|+|||||.|.++..+++. +.+|+++|+++..++..+++...+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~   80 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDM   80 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            5689999999999999988864 679999999999999998876543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.45  E-value=0.0044  Score=59.73  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC----------------------------------------CE
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG----------------------------------------FR  157 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g----------------------------------------~~  157 (321)
                      .+.+...+-.+....++..++|.|||.|.+.+.++..+                                        .+
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            34444444445544577899999999999998887632                                        35


Q ss_pred             EEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          158 VLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       158 ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      |+++|-+|..++..++|...+++.+++++.+.
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~  297 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQL  297 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTCSEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            99999999999999999999988655666543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=96.45  E-value=0.0018  Score=57.31  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=40.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .++..|+|||||.|.++..+++.+. +|+++|+++..++..++++..
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~  101 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK  101 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc
Confidence            3668999999999999999988776 999999999999999887653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.44  E-value=0.0074  Score=57.49  Aligned_cols=47  Identities=17%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhc
Q 020824          132 GKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      .++..|+|||||.|.++..+++   .+++|+++|+++...+..++++..+
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~  131 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYH  131 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHH
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            3678999999999999998886   3679999999999999999887654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.44  E-value=0.0081  Score=50.66  Aligned_cols=44  Identities=25%  Similarity=0.117  Sum_probs=34.2

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C----------CEEEEECCChH
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G----------FRVLSFEPVFE  166 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g----------~~ViafEP~p~  166 (321)
                      ++...+....++..|+|||||.|.++..+++. |          ++|+++|.++.
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            33443332356799999999999999999873 4          79999999983

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.44  E-value=0.00086  Score=61.65  Aligned_cols=50  Identities=4%  Similarity=-0.140  Sum_probs=44.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      ++...|+|||||.|..++.++.  +..+|+++|-|+...+..++|...|++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~  182 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP  182 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            4568999999999999998876  3589999999999999999999988763

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=96.40  E-value=0.0041  Score=56.37  Aligned_cols=44  Identities=11%  Similarity=0.023  Sum_probs=37.3

Q ss_pred             CCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824          133 KNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++..|+|||||.|.++.++++ .+.+|+++|+++.+.+..++++.
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            678999999999997666655 47899999999999998887654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=96.35  E-value=0.012  Score=54.27  Aligned_cols=56  Identities=14%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..|+|||||.|.++..+++.  +.+++++|.+ ...+..++++..+++.+++++..
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~  221 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIA  221 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEe
Confidence            46789999999999999988873  7899999999 99999998887666544555543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.32  E-value=0.0066  Score=49.52  Aligned_cols=44  Identities=25%  Similarity=0.124  Sum_probs=34.8

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCCh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVF  165 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p  165 (321)
                      .+++..+....++..|+|+|||.|.++..+++.   +.+|+++|+++
T Consensus        11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~   57 (180)
T 1ej0_A           11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence            344554432357789999999999999998874   48999999998

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=96.30  E-value=0.0086  Score=55.40  Aligned_cols=53  Identities=21%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             CEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          135 GLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..|+|||||.|.++..+++  ++.+++++|. |...+..++++..+++.+++++..
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~  223 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVG  223 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEec
Confidence            8999999999999998886  3689999999 999999988876555545565543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.27  E-value=0.0098  Score=55.59  Aligned_cols=46  Identities=11%  Similarity=-0.249  Sum_probs=40.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +++..|+|||||.|..+..+++.  +.+|+++|.+|...+..++++..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            45689999999999999999874  58999999999999999988653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.26  E-value=0.0073  Score=58.08  Aligned_cols=72  Identities=13%  Similarity=0.082  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC----------------------------------------CE
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG----------------------------------------FR  157 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g----------------------------------------~~  157 (321)
                      .+.+...+-.+....++..++|.+||.|.+.+.++..+                                        .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            34444444445544578899999999999998887532                                        35


Q ss_pred             EEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          158 VLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       158 ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      |+++|-++..++..++|...+++.+++++.+.
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~  290 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQM  290 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            99999999999999999999988666666543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.26  E-value=0.0082  Score=55.71  Aligned_cols=57  Identities=12%  Similarity=-0.155  Sum_probs=45.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh--cCC-CCceEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF--NRV-GDLVTVYE  188 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l--N~~-~~~v~~~~  188 (321)
                      .+...|+|||||.|..+..+++.  ..+|+++|.+|..++..++++..  +++ .++++++.
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~  155 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV  155 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE
Confidence            45689999999999999999875  37999999999999999988754  233 24566553

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.24  E-value=0.0091  Score=55.19  Aligned_cols=70  Identities=19%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      +.|.+..   +++..+ ...+++++||+++|.|.+|..+++.+++|++||-+|..++..++ ++.    +++++++.-.
T Consensus         6 H~pVLl~---e~le~L-~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f   75 (285)
T 1wg8_A            6 HVPVLYQ---EALDLL-AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNF   75 (285)
T ss_dssp             CCCTTHH---HHHHHH-TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCG
T ss_pred             chhHHHH---HHHHhh-CCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCc
Confidence            4566533   444444 23578999999999999999999888999999999999998877 432    3666666543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.17  E-value=0.014  Score=52.58  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      ...+++++....  .++++|+|..||.|.....+.+.|.+++++|-+|..++..++++..|+
T Consensus       199 ~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            334556665544  478999999999999999999999999999999999999999887664

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.17  E-value=0.015  Score=55.38  Aligned_cols=54  Identities=13%  Similarity=0.001  Sum_probs=44.7

Q ss_pred             CCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          133 KNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      ++++|||||.|.|..|..++..  +.+|+|+|.++...+.|++...    .+++++++.=
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~----~~~l~ii~~D  113 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRD  113 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSC
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc----CCCEEEEECC
Confidence            4689999999999999999864  5799999999999999988752    2467776653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=96.15  E-value=0.011  Score=54.67  Aligned_cols=54  Identities=17%  Similarity=0.027  Sum_probs=44.9

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      +..+++|||||.|.++..+++  ++.+++++|. |...+..++++...++.+++++.
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~  224 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVV  224 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEe
Confidence            468999999999999998886  5689999999 99999999887766655556554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.11  E-value=0.02  Score=53.77  Aligned_cols=54  Identities=13%  Similarity=-0.124  Sum_probs=44.4

Q ss_pred             CEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          135 GLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..|+|||||.|..+..+++  ++.+|+++|.+|..++..++++..+. .++++++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~  146 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVD  146 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEES
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEEC
Confidence            4999999999999999987  47899999999999999998876543 245666543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.05  E-value=0.012  Score=54.26  Aligned_cols=45  Identities=9%  Similarity=-0.157  Sum_probs=39.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +++..|+|||||.|..+..+++.  ..+|+++|.+|..++..++++.
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~  135 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK  135 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence            45689999999999999999874  4799999999999999998864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.92  E-value=0.015  Score=54.83  Aligned_cols=46  Identities=11%  Similarity=-0.249  Sum_probs=40.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .+...|+|||||.|..+..+++.  +.+|+++|.+|..++..++++..
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~  166 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD  166 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            45689999999999999999874  47999999999999999988753

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.88  E-value=0.018  Score=52.45  Aligned_cols=45  Identities=9%  Similarity=-0.168  Sum_probs=40.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++...|+|||||.|..+..+++. + .+|+++|.+|..++..++++.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence            45689999999999999999875 4 799999999999999998864

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.88  E-value=0.014  Score=53.22  Aligned_cols=44  Identities=16%  Similarity=-0.019  Sum_probs=39.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~  175 (321)
                      .++..|+|||||.|..+..+++.+ .+|+++|.+|...+..++++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            456899999999999999998764 69999999999999999886

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.86  E-value=0.021  Score=52.71  Aligned_cols=44  Identities=11%  Similarity=-0.133  Sum_probs=39.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +++..|+|||||.|..+..+++.  +.+|+++|.+|..++..++++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~  139 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHF  139 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHh
Confidence            46689999999999999999874  479999999999999998876

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=95.85  E-value=0.029  Score=50.87  Aligned_cols=46  Identities=15%  Similarity=0.164  Sum_probs=35.6

Q ss_pred             CCCCEEEEECCCCchHHHHHH-----H-cCCEE--EEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAA-----V-MGFRV--LSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a-----~-~g~~V--iafEP~p~~~~~L~~n~~l  177 (321)
                      .++..|+|||||.|..+..++     + .+.+|  +++||++.+++..++..+.
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~  104 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK  104 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHh
Confidence            356799999999998775332     2 35654  9999999999998887653

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.76  E-value=0.012  Score=57.26  Aligned_cols=61  Identities=8%  Similarity=0.028  Sum_probs=49.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---------------cCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---------------MGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---------------~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +.+++-.++...++.+|+|.|||.|.+.+.+++               .+.+++++|.+|..++..+.|+.+++..
T Consensus       159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            444455556656778999999999999888775               2368999999999999999999888763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.74  E-value=0.019  Score=53.50  Aligned_cols=46  Identities=11%  Similarity=-0.235  Sum_probs=40.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      ++...|+|||||.|..+..+++.  +.+|+++|.+|..++..++++..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            45689999999999999999874  47999999999999999988653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.68  E-value=0.021  Score=53.05  Aligned_cols=45  Identities=11%  Similarity=-0.113  Sum_probs=40.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++...|+|||||.|..+..+++.  +.+|+++|.+|..++..++++.
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~  122 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP  122 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence            45689999999999999999874  5799999999999999998865

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.61  E-value=0.02  Score=54.85  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=32.2

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChH
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFE  166 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~  166 (321)
                      .+|.++||+||.-|-||..+++.|++|+|+|+.|-
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l  244 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPM  244 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhc
Confidence            47899999999999999999999999999998763

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.47  E-value=0.028  Score=51.38  Aligned_cols=46  Identities=11%  Similarity=-0.249  Sum_probs=40.4

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +++..|+|||||.|..+..+++.  +.+|+++|.+|...+..++++..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            46689999999999999999874  47999999999999999988653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.47  E-value=0.026  Score=52.12  Aligned_cols=45  Identities=9%  Similarity=-0.073  Sum_probs=36.7

Q ss_pred             CCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhh
Q 020824          133 KNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      ++..|+|||||.|.....+++ .+++|+++|+++.+++..++....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh
Confidence            578999999999976655444 458999999999999998876543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=95.34  E-value=0.012  Score=53.54  Aligned_cols=43  Identities=26%  Similarity=0.217  Sum_probs=34.6

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF  165 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p  165 (321)
                      +..++.. ....++.+|+|+||+.|.++..+++. ++|+++|.+|
T Consensus        63 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~  105 (265)
T 2oxt_A           63 LAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT  105 (265)
T ss_dssp             HHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC
T ss_pred             HHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch
Confidence            4444444 22246789999999999999999988 8999999988

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=95.04  E-value=0.015  Score=53.27  Aligned_cols=33  Identities=30%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF  165 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p  165 (321)
                      .++.+|+|+|||.|.++..+++. ++|+++|.+|
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~  113 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT  113 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch
Confidence            46789999999999999999988 7999999988

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=94.87  E-value=0.042  Score=52.26  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=41.5

Q ss_pred             cCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHH
Q 020824          109 GKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRI  171 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L  171 (321)
                      .+.|..|..   +.+.+...+...++..|+|+|||.|.+++.+++   .+.+|+++|.+|..++..
T Consensus        18 ~g~~~TP~~---l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a   80 (421)
T 2ih2_A           18 LGRVETPPE---VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   80 (421)
T ss_dssp             ---CCCCHH---HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             CceEeCCHH---HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence            355665643   333344444434567999999999999999886   358999999999877543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.51  E-value=0.072  Score=55.08  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-----------------------------------------
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-----------------------------------------  155 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-----------------------------------------  155 (321)
                      +.+.+...+-.+....++..++|.+||.|.+.+.++..+                                         
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            334444444444444567899999999999988877531                                         


Q ss_pred             ---CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          156 ---FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       156 ---~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                         .+|+++|-+|..++..++|...+++.+.+++.+.-+
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~  292 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDV  292 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCG
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence               479999999999999999999999876677776644

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=94.44  E-value=0.042  Score=51.32  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHH
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQ  169 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~  169 (321)
                      ..++.+|+|||||.|.++..+++  ++.+++++|. |....
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~  221 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA  221 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh
Confidence            35678999999999999998887  4679999999 54444

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.19  E-value=0.05  Score=46.94  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      ++..|+|||||.|.++..+++.    +++|+++...+..+++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR   84 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc
Confidence            3789999999999999888765    9999999999888764

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=94.07  E-value=0.098  Score=48.42  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=28.2

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEP  163 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP  163 (321)
                      .++.+|+|+||+.|.+|..+++. ++|+++|.
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~  111 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL-KNVREVKG  111 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS-TTEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc-CCEEEEec
Confidence            46789999999999999999987 68999987

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=94.03  E-value=0.089  Score=44.02  Aligned_cols=52  Identities=13%  Similarity=0.003  Sum_probs=40.0

Q ss_pred             chhHHHHHHHHHHhcCCCCCEEEEECCCCch-HHHHHHH-cCCEEEEECCChHHHH
Q 020824          116 DISVTIQEILEKMKKEGKNGLVVDVGANVGM-ASFAAAV-MGFRVLSFEPVFENLQ  169 (321)
Q Consensus       116 ~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~-~sl~~a~-~g~~ViafEP~p~~~~  169 (321)
                      .+.+.+.+++.+-.  .+++.++|||||-|. .+.++++ .|..|+|+|-+|...+
T Consensus        20 ~m~e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           20 HMWNDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             hHHHHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            44444555555444  345899999999995 8888886 8999999999988766

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=93.88  E-value=0.16  Score=47.55  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=40.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .+..+++|||||.|.++..+++  ++.+++.+|- |...+..+++++... .++|++.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~  233 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQ  233 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeee
Confidence            4668999999999999998886  5789999985 888888877665333 3455543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=93.65  E-value=0.18  Score=46.29  Aligned_cols=56  Identities=14%  Similarity=-0.053  Sum_probs=38.1

Q ss_pred             CCCEEEEECCCCch--HHH-HHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGM--ASF-AAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~--~sl-~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ....|+|||||.|.  ++. .+.+  ++++|+++|.+|.+++.-++.+.-+.. .+++++.+
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~a  138 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEA  138 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEEC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEe
Confidence            34789999999733  333 3333  579999999999999988877653321 24444443

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.56  E-value=0.13  Score=51.46  Aligned_cols=69  Identities=12%  Similarity=0.049  Sum_probs=52.3

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--------------------CCEEEEECCChHHHH
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--------------------GFRVLSFEPVFENLQ  169 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--------------------g~~ViafEP~p~~~~  169 (321)
                      +.|.-|..   +.+++-.++.+.++.+|+|.+||.|.+.+.+++.                    ..+++++|-+|.+++
T Consensus       149 G~fyTP~~---iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~  225 (541)
T 2ar0_A          149 GQYFTPRP---LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  225 (541)
T ss_dssp             -CCCCCHH---HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             CeeeCCHH---HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence            45665643   3344555666667789999999999998877641                    137999999999999


Q ss_pred             HHHHhhhhcCCC
Q 020824          170 RICDGVWFNRVG  181 (321)
Q Consensus       170 ~L~~n~~lN~~~  181 (321)
                      ..+.|+.+++..
T Consensus       226 lA~~nl~l~gi~  237 (541)
T 2ar0_A          226 LALMNCLLHDIE  237 (541)
T ss_dssp             HHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCC
Confidence            999999888764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=93.54  E-value=0.051  Score=49.22  Aligned_cols=44  Identities=7%  Similarity=-0.232  Sum_probs=37.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      +....|+|||||.|..+..+++.+.+|+++|.+|...+..++++
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~  114 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFF  114 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            45579999999999999888765689999999999998877654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=93.53  E-value=0.14  Score=51.34  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=52.6

Q ss_pred             cCCCCCCchhHHHHHHHHHHhc----CCCCCEEEEECCCCchHHHHHHHc-----CCEEEEECCChHHHHHHHHhhhhcC
Q 020824          109 GKPFRKPDISVTIQEILEKMKK----EGKNGLVVDVGANVGMASFAAAVM-----GFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~~L~~~~~----~~~~~~vvDIGAn~G~~sl~~a~~-----g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .|.|.-|..   +.+++-.++.    ..++.+|+|.+||.|.+.+.+++.     ..+++++|-+|.++...+.|+.+++
T Consensus       196 ~G~fyTP~~---Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  272 (542)
T 3lkd_A          196 AGEFYTPQP---VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG  272 (542)
T ss_dssp             CSSCCCCHH---HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCeecccHH---HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC
Confidence            355665642   3344444443    346789999999999988777652     4789999999999999999999887


Q ss_pred             CC
Q 020824          180 VG  181 (321)
Q Consensus       180 ~~  181 (321)
                      ..
T Consensus       273 i~  274 (542)
T 3lkd_A          273 VP  274 (542)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=92.91  E-value=0.35  Score=44.40  Aligned_cols=150  Identities=13%  Similarity=0.105  Sum_probs=87.4

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-------cCCEEEEECCCh--------------------------HH
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-------MGFRVLSFEPVF--------------------------EN  167 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-------~g~~ViafEP~p--------------------------~~  167 (321)
                      ++.+++.+......+.|++||...|+.+++++.       .+.+|++||...                          ..
T Consensus        94 L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~  173 (282)
T 2wk1_A           94 IRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVS  173 (282)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCC
T ss_pred             HHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhH
Confidence            455566665444568999999999999998874       167899998531                          13


Q ss_pred             HHHHHHhhhhcCCC-CceEEEEEeEecCcceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCC
Q 020824          168 LQRICDGVWFNRVG-DLVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPV  246 (321)
Q Consensus       168 ~~~L~~n~~lN~~~-~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~i  246 (321)
                      ++..++|++..++. ++|              ++..  |.    ..                     -||.++.  .+++
T Consensus       174 ~~~ar~n~~~~gl~~~~I--------------~li~--Gd----a~---------------------etL~~~~--~~~~  210 (282)
T 2wk1_A          174 EEEVRRNFRNYDLLDEQV--------------RFLP--GW----FK---------------------DTLPTAP--IDTL  210 (282)
T ss_dssp             HHHHHHHHHHTTCCSTTE--------------EEEE--SC----HH---------------------HHSTTCC--CCCE
T ss_pred             HHHHHHHHHHcCCCcCce--------------EEEE--eC----HH---------------------HHHhhCC--CCCE
Confidence            55567777655542 333              3332  10    00                     0233322  2479


Q ss_pred             cEEEEecCCch--HHHHHhhHHhhhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCCe--EEEEeCCccceecC
Q 020824          247 LLLKIDVQGWE--YHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYH--HCNQHGTDAHCTKD  321 (321)
Q Consensus       247 dlLKIDVEG~E--~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~--~~~~~G~~~~~~~~  321 (321)
                      ||+-||..-++  .+.|.-..+.|...     -+++-.+ ...  .......+.++++.+|..  +....++-.+..|+
T Consensus       211 d~vfIDaD~y~~~~~~Le~~~p~L~pG-----GiIv~DD-~~~--~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          211 AVLRMDGDLYESTWDTLTNLYPKVSVG-----GYVIVDD-YMM--CPPCKDAVDEYRAKFDIADELITIDRDGVYWQRT  281 (282)
T ss_dssp             EEEEECCCSHHHHHHHHHHHGGGEEEE-----EEEEESS-CTT--CHHHHHHHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred             EEEEEcCCccccHHHHHHHHHhhcCCC-----EEEEEcC-CCC--CHHHHHHHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence            99999997644  34555555444432     2333222 221  112456788889888854  45566666666554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=92.76  E-value=0.21  Score=45.55  Aligned_cols=64  Identities=19%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             hcCCCCCCchhHHHHH-HHHHHhcCCCCCEEEEECCCCchH--HH--HHHHc------CCEEEEECCChHHHHHHHHhh
Q 020824          108 KGKPFRKPDISVTIQE-ILEKMKKEGKNGLVVDVGANVGMA--SF--AAAVM------GFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       108 ~~~~~~~p~~~~~~~~-~L~~~~~~~~~~~vvDIGAn~G~~--sl--~~a~~------g~~ViafEP~p~~~~~L~~n~  175 (321)
                      ....|++|.....+.+ ++..    .+...|+|+||+.|..  |+  .++..      +++|+|+|.++.+++..++++
T Consensus        83 ~t~FfRd~~~f~~l~~~llp~----~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A           83 LTAFFREAHHFPILAEHARRR----HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CCCTTTTTTHHHHHHHHHHHS----CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CccccCChHHHHHHHHHccCC----CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            3455666665544433 2332    2357899999999983  33  33432      369999999999999998875

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=92.42  E-value=0.15  Score=48.12  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=32.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHH
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQR  170 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~  170 (321)
                      .+..+|+|||||.|.++..+++  ++.+++++|. |...+.
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~  241 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQD  241 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHh
Confidence            4578999999999999999887  5789999999 765543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=92.26  E-value=0.23  Score=46.62  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=32.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHH
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQR  170 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~  170 (321)
                      .+...|+|||||.|.++..+++  ++.+++++|. |...+.
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~  247 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN  247 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHh
Confidence            4678999999999999999987  3579999999 876654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=92.20  E-value=0.25  Score=49.48  Aligned_cols=70  Identities=14%  Similarity=0.081  Sum_probs=51.4

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-----------------CCEEEEECCChHHHHHHH
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-----------------GFRVLSFEPVFENLQRIC  172 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-----------------g~~ViafEP~p~~~~~L~  172 (321)
                      |.|.-|..   +.+++-.++.+.+ ++|+|.+||.|.+-+.+++.                 ..+++++|-+|.++...+
T Consensus       225 G~fyTP~~---Vv~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~  300 (544)
T 3khk_A          225 GQYYTPKS---IVTLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA  300 (544)
T ss_dssp             TTTCCCHH---HHHHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred             CeEeCCHH---HHHHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence            45555532   4455555665433 49999999999987766431                 358999999999999999


Q ss_pred             HhhhhcCCCCc
Q 020824          173 DGVWFNRVGDL  183 (321)
Q Consensus       173 ~n~~lN~~~~~  183 (321)
                      .|+.++++..+
T Consensus       301 ~Nl~l~gi~~~  311 (544)
T 3khk_A          301 MNMVIRGIDFN  311 (544)
T ss_dssp             HHHHHTTCCCB
T ss_pred             HHHHHhCCCcc
Confidence            99998886543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=92.13  E-value=0.15  Score=47.42  Aligned_cols=38  Identities=16%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHH
Q 020824          132 GKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQR  170 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~  170 (321)
                      .+...|+|||||.|.++..+++  ++.+++++|. |...+.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~  226 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN  226 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhh
Confidence            3568999999999999999886  4689999999 876554

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=92.08  E-value=0.23  Score=46.79  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHH
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQR  170 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~  170 (321)
                      ..+...|+|||||.|.++..+++  ++.+++++|. |..++.
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~  239 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISE  239 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHh
Confidence            34678999999999999998886  5789999999 765443

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=91.89  E-value=1.2  Score=42.24  Aligned_cols=141  Identities=15%  Similarity=0.044  Sum_probs=76.8

Q ss_pred             CEEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEEeecCCCCCcccc
Q 020824          135 GLVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFHKLVGRLDNSAVS  213 (321)
Q Consensus       135 ~~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~~~~~~~~~s~l~  213 (321)
                      -.++|+-||.|..++-+.+.|++ |.++|-++...+.++.|+.      +..+++.-+.+-..             ..+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~-------------~~~~   63 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNA-------------EIIK   63 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCH-------------HHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCH-------------HHHH
Confidence            47999999999999999988986 6699999999999887742      22222111111000             0000


Q ss_pred             ccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEcccchhhc-CC
Q 020824          214 ATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQAS-NS  292 (321)
Q Consensus       214 ~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~~~~~~~~-~~  292 (321)
                      .    ......     ++.++..+-=++.+....  |-+.++..-..+....++++..+  ..++++|--+...... ..
T Consensus        64 ~----~~~~~~-----~~D~i~ggpPCQ~fS~ag--~~~~~d~r~~L~~~~~~~v~~~~--P~~~v~ENV~gl~s~~~~~  130 (376)
T 3g7u_A           64 G----FFKNDM-----PIDGIIGGPPCQGFSSIG--KGNPDDSRNQLYMHFYRLVSELQ--PLFFLAENVPGIMQEKYSG  130 (376)
T ss_dssp             H----HHCSCC-----CCCEEEECCCCCTTC---------CHHHHHHHHHHHHHHHHHC--CSEEEEEECTTTTCGGGHH
T ss_pred             h----hcccCC-----CeeEEEecCCCCCccccc--CCCCCCchHHHHHHHHHHHHHhC--CCEEEEecchHhhccCcHH
Confidence            0    000000     011111111111110000  00223334456677777888874  3488999877665321 23


Q ss_pred             CHHHHHHHHHcCCCeE
Q 020824          293 SAKEIREFLHSVGYHH  308 (321)
Q Consensus       293 ~~~ei~~~L~~~GY~~  308 (321)
                      .+.++. .|.+.||.+
T Consensus       131 ~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A          131 IRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             HHHHHH-HHHHTTEEE
T ss_pred             HHHHHH-HHHcCCCcc
Confidence            467788 999999997

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=91.21  E-value=0.42  Score=46.29  Aligned_cols=49  Identities=8%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCC------CchHHHHHHH---cCCEEEEECCChHH
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGAN------VGMASFAAAV---MGFRVLSFEPVFEN  167 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn------~G~~sl~~a~---~g~~ViafEP~p~~  167 (321)
                      +....+++|..+.  .+...|+|||||      .|..++.+++   ++++|+++|.++.+
T Consensus       202 y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m  259 (419)
T 3sso_A          202 FTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS  259 (419)
T ss_dssp             CHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG
T ss_pred             HHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            3344455555544  356899999999      6777777764   47899999999985

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=90.76  E-value=0.5  Score=44.65  Aligned_cols=70  Identities=10%  Similarity=0.045  Sum_probs=49.9

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .+.|.+-.   ++++.+. ..+++++||+.+|.|-+|..+++.   .++|++||=+|..++..+ .+  .  .+++++++
T Consensus        40 ~H~pVLl~---Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~  110 (347)
T 3tka_A           40 KHTTVLLD---EAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIH  110 (347)
T ss_dssp             --CCTTTH---HHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEE
T ss_pred             CcccccHH---HHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEe
Confidence            35566633   4455443 357899999999999999998863   489999999999988763 32  1  35677776


Q ss_pred             Ee
Q 020824          189 AA  190 (321)
Q Consensus       189 ~A  190 (321)
                      .-
T Consensus       111 ~n  112 (347)
T 3tka_A          111 GP  112 (347)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=90.70  E-value=2  Score=38.58  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=27.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHH---------cC-----CEEEEECCChH
Q 020824          132 GKNGLVVDVGANVGMASFAAAV---------MG-----FRVLSFEPVFE  166 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~---------~g-----~~ViafEP~p~  166 (321)
                      .+..+|+|||.|.|+.++.+++         +.     .++++||+.|.
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~  107 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPL  107 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcC
Confidence            3568999999999998877543         21     48999999983

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=90.23  E-value=0.34  Score=43.75  Aligned_cols=55  Identities=18%  Similarity=0.083  Sum_probs=38.1

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChH
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFE  166 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~  166 (321)
                      +.|+.... -.+.++.++. ...++.+|+|+||..|-||.+++. .| .+|+|++--+.
T Consensus        57 g~yrSRa~-~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~  113 (267)
T 3p8z_A           57 HHAVSRGS-AKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP  113 (267)
T ss_dssp             SCCSSTHH-HHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST
T ss_pred             CCccchHH-HHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC
Confidence            45554322 2344555555 235778999999999999999987 46 47999986543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=90.11  E-value=0.28  Score=45.70  Aligned_cols=36  Identities=17%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQ  169 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~  169 (321)
                      +..+|+|||||.|.++..+++  ++.+++++|. |...+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~  230 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVG  230 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHh
Confidence            568999999999999999887  3679999998 75543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=89.08  E-value=0.49  Score=43.97  Aligned_cols=54  Identities=15%  Similarity=0.084  Sum_probs=37.4

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCC-EEEEECCCh
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGF-RVLSFEPVF  165 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~-~ViafEP~p  165 (321)
                      +.|+.... -.+.++.++.. ..++++|+|+||..|-||.+++. .|. +|+|++--.
T Consensus        73 g~y~SR~~-~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~  128 (321)
T 3lkz_A           73 GHPVSRGT-AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG  128 (321)
T ss_dssp             CCCSSTHH-HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred             CCccchHH-HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence            55664432 23445555532 24778999999999999999886 564 699998654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=88.83  E-value=1  Score=42.74  Aligned_cols=56  Identities=13%  Similarity=-0.010  Sum_probs=47.0

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcC--CEEEEECCChHHHHHHHHhhhhcCC
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMG--FRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g--~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ...++...+|..|+|.-|+-|.=|+.++..+  ++|+|+|.++.-++.+++|+...+.
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~  197 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVP  197 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhh
Confidence            3445667789999999999999998888754  5899999999999999999886554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=87.12  E-value=2.5  Score=39.02  Aligned_cols=63  Identities=14%  Similarity=0.034  Sum_probs=49.4

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +..+.-...+++++....  .++++|+|-=||.|.....+.+.|.+.+++|-+|..++..++++.
T Consensus       233 ~~~~kp~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~  295 (323)
T 1boo_A          233 HPARFPAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFL  295 (323)
T ss_dssp             CSSCCCTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             CCCcCCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            333333444566665543  578999999999999999998999999999999999888877654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=85.41  E-value=1.4  Score=40.39  Aligned_cols=52  Identities=19%  Similarity=0.133  Sum_probs=34.5

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-CEEEEECC
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-FRVLSFEP  163 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP  163 (321)
                      +.|+... .-.+.++.++. ...++.+|||+||+.|-|+.+++.. + ..|.+++-
T Consensus        53 ~~YrSRa-A~KL~ei~ek~-~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV  106 (277)
T 3evf_A           53 GVAVSRG-TAKLRWFHERG-YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL  106 (277)
T ss_dssp             CBCSSTH-HHHHHHHHHTT-SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             CCccccH-HHHHHHHHHhC-CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEE
Confidence            3466443 33455555553 3357789999999999999999863 4 35655553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=84.94  E-value=1.9  Score=45.34  Aligned_cols=48  Identities=13%  Similarity=0.109  Sum_probs=39.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHc-C----CEEEEECCChHHHHHH--HHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVM-G----FRVLSFEPVFENLQRI--CDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~-g----~~ViafEP~p~~~~~L--~~n~~lN~~  180 (321)
                      ++.+|+|.|||.|.+.+.+++. +    .+++++|-+|..++..  +.|+..|.+
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L  375 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL  375 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999988863 2    5799999999999988  777666544

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=83.54  E-value=1.3  Score=40.68  Aligned_cols=53  Identities=25%  Similarity=0.219  Sum_probs=35.4

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCC
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPV  164 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~  164 (321)
                      +.|+... .-.+.++.++. ...++.+|||+||+-|.|+.++++ .+ ..|++++-.
T Consensus        69 g~YrSRA-AfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG  123 (282)
T 3gcz_A           69 GIAVSRG-SAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG  123 (282)
T ss_dssp             SBCSSTH-HHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCEecHH-HHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEec
Confidence            4455432 23345555554 235778999999999999999986 45 357777543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=82.33  E-value=2.7  Score=39.08  Aligned_cols=43  Identities=19%  Similarity=-0.080  Sum_probs=38.6

Q ss_pred             CCEEEEECCCCchHHHHHHHcCCE-EEEECCChHHHHHHHHhhh
Q 020824          134 NGLVVDVGANVGMASFAAAVMGFR-VLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       134 ~~~vvDIGAn~G~~sl~~a~~g~~-ViafEP~p~~~~~L~~n~~  176 (321)
                      +.+++|+.||.|-.++-+.+.|++ |+++|-++...+.++.|+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            478999999999999999999975 7889999999999998863

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=81.89  E-value=2.8  Score=38.69  Aligned_cols=53  Identities=21%  Similarity=0.137  Sum_probs=37.0

Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCC
Q 020824          110 KPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPV  164 (321)
Q Consensus       110 ~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~  164 (321)
                      +.|+.... -.+.++.++ --..++.++||+||..|-|+..+++ .+ ..|++++-.
T Consensus        60 g~yrSRaa-~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg  114 (300)
T 3eld_A           60 GISVSRGA-AKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG  114 (300)
T ss_dssp             CCCSSTTH-HHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCccchHH-HHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence            56775543 234455555 2225789999999999999999997 45 367777654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=80.74  E-value=0.77  Score=41.77  Aligned_cols=52  Identities=23%  Similarity=0.137  Sum_probs=34.4

Q ss_pred             cCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-C-----CEEEEEC
Q 020824          109 GKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM-G-----FRVLSFE  162 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g-----~~ViafE  162 (321)
                      .+.|+..... .+.++-++.+ ..++.+|||+||.-|-||.++++. +     +.|++.+
T Consensus        51 ~g~yRSRAay-KL~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D  108 (269)
T 2px2_A           51 GGHPVSRGTA-KLRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP  108 (269)
T ss_dssp             CSCCSSTHHH-HHHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST
T ss_pred             CCCcccHHHH-HHHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc
Confidence            4567755332 2333333332 247899999999999999999874 2     4567765

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=80.62  E-value=4.5  Score=37.38  Aligned_cols=56  Identities=16%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCCh---HHHHHHHHhh
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVF---ENLQRICDGV  175 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p---~~~~~L~~n~  175 (321)
                      ...+++++....  .++++|+|-=||.|.....+.+.|.+.+++|-+|   ..++..++.+
T Consensus       229 ~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl  287 (319)
T 1eg2_A          229 AAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  287 (319)
T ss_dssp             HHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHH
Confidence            444566665544  5789999999999999999999999999999999   7777666554

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=80.30  E-value=4  Score=40.49  Aligned_cols=70  Identities=10%  Similarity=0.038  Sum_probs=53.6

Q ss_pred             cCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH----c-----------CCEEEEECCChHHHHHHHH
Q 020824          109 GKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV----M-----------GFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       109 ~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~-----------g~~ViafEP~p~~~~~L~~  173 (321)
                      .|.|.-|.   .+.+++-.++.+.++.+|+|-.||.|.+-+.+.+    .           ...++++|-++.++...+.
T Consensus       196 ~GqfyTP~---~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m  272 (530)
T 3ufb_A          196 SGEFYTPR---PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM  272 (530)
T ss_dssp             CCCCCCCH---HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred             CceECCcH---HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence            34566664   2555666777777888999999999998766543    1           2469999999999999999


Q ss_pred             hhhhcCCC
Q 020824          174 GVWFNRVG  181 (321)
Q Consensus       174 n~~lN~~~  181 (321)
                      |+.+.+..
T Consensus       273 Nl~lhg~~  280 (530)
T 3ufb_A          273 NLLLHGLE  280 (530)
T ss_dssp             HHHHHTCS
T ss_pred             HHHhcCCc
Confidence            99888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d2py6a1	395	c.66.1.56 (A:14-408) Methyltransferase FkbM {Methy	8e-20

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} Length = 395

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

 Score = 87.0 bits (215), Expect = 8e-20
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 25/184 (13%)

Query: 130 KEGKNGLVVDVGANVGMASFAAAVM----GFRVLSFEP---VFENLQRICDGVWFNRVGD 182
           +   +  +VD GA++G +      +      RV   EP     + LQ +           
Sbjct: 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFAS 268

Query: 183 LVTVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPE 242
            +TV+     +    + F+   G       +         ++ E A  +   P+D++I +
Sbjct: 269 RITVHGCGAGENTIRVPFNHEGGHGGFVKPA--------DADHEPADLIDVRPIDDIIDD 320

Query: 243 AEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLH 302
           A     +K+D++G E   LKGA + +S  K   P L            ++   ++  ++ 
Sbjct: 321 A--PTFIKMDIEGSELSALKGARRAISEHK---PKLAISAYHR-----STDLLDLTNYIL 370

Query: 303 SVGY 306
           S+  
Sbjct: 371 SIRP 374

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	99.92
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.78
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.59
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.37
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.22
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.15
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.12
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.12
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.12
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.1
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.09
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.09
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.99
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.99
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.96
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.92
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.91
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.89
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.89
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.84
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.83
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	97.79
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.77
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.75
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.75
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	97.75
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.73
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.68
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.68
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.63
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.62
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.62
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.57
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.57
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.56
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.55
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.53
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.52
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.52
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.49
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.48
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.48
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.46
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.46
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.45
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.44
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.44
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.43
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.4
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.38
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.37
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.35
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.33
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.31
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.29
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.27
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.21
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.19
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.18
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.17
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.12
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	96.85
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.85
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.83
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.81
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	96.76
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.76
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.73
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	96.61
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.6
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.58
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.55
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.4
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.06
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.9
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	95.9
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.21
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	94.59
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	93.95
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	93.49
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	91.58
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	91.16
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	90.4
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	89.78
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.06
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.6
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	88.57
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	88.26
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.55
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	87.42
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.4
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	86.89
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	86.43
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	83.62
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	80.96
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	80.18

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=99.92  E-value=2.8e-25  Score=214.12  Aligned_cols=166  Identities=22%  Similarity=0.291  Sum_probs=125.1

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH--c--CCEEEEECCChHHHHHHHHhhhhcCCC---CceEEEEEeEecCcceEEEEee
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV--M--GFRVLSFEPVFENLQRICDGVWFNRVG---DLVTVYEAAVSDRIGNITFHKL  203 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~--~--g~~ViafEP~p~~~~~L~~n~~lN~~~---~~v~~~~~Alsd~~g~~~~~~~  203 (321)
                      ..++.+|||||||+|.++..+++  .  +.+|+||||+|.+++.|++|+..|...   .++.+++.|++++++++.++..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~  289 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHE  289 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC---
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEEEeeccceEEEEecC
Confidence            46889999999999999998765  2  369999999999999999999988653   3689999999999999887753


Q ss_pred             cCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCchHHHHHhhHHhhhhhcCCCCEEEEEEc
Q 020824          204 VGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWEYHVLKGATKLLSRKKGESPYLIYEED  283 (321)
Q Consensus       204 ~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E~~VL~G~~~~L~~~k~~~p~IiiE~~  283 (321)
                      .+.  ++.....      ........+|+++|||+++.+  ++++|||||||+|++||+|+.++|++.   +|.|++|.+
T Consensus       290 ~~~--~s~~~~~------~~~~~~~~~V~~~tLD~l~~~--~id~IKIDVEG~E~~VLkGa~~~Lk~~---kPiI~IEiy  356 (395)
T d2py6a1         290 GGH--GGFVKPA------DADHEPADLIDVRPIDDIIDD--APTFIKMDIEGSELSALKGARRAISEH---KPKLAISAY  356 (395)
T ss_dssp             -------------------------CEEEEECHHHHCSS--CCSEEEECCSSCHHHHHHTTHHHHHHH---CCEEEEECC
T ss_pred             CCc--ccccccc------ccCCCceEEEEEEEHHHhcCC--CCCEEEEcCCCCHHHHHHHHHHHHHhC---CCEEEEEEe
Confidence            221  1111100      111223457999999999864  699999999999999999999999998   689999986


Q ss_pred             ccchhhcCCCHHHHHHHHHcC--CCeEEEEeCC
Q 020824          284 EHLLQASNSSAKEIREFLHSV--GYHHCNQHGT  314 (321)
Q Consensus       284 ~~~~~~~~~~~~ei~~~L~~~--GY~~~~~~G~  314 (321)
                      +.     ..+..++..+|.+.  ||+++-++.+
T Consensus       357 h~-----~~d~~~i~~~L~~l~~~Y~~~lR~h~  384 (395)
T d2py6a1         357 HR-----STDLLDLTNYILSIRPDYQIGLRHHT  384 (395)
T ss_dssp             SS-----TTHHHHHHHHHHHHCTTCCEEEEECS
T ss_pred             cc-----HhhHHHHHHHHHHhccCCeEEEecCC
Confidence            43     24566788888877  9998776543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.78  E-value=1.2e-08  Score=86.33  Aligned_cols=71  Identities=24%  Similarity=0.294  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .+++..++-..+...++++|+|||||.|..++.+++.+.+|+++|.+|..++..++|.+.+++.+++++++
T Consensus        18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~   88 (186)
T d1l3ia_          18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME   88 (186)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE
Confidence            34465555566777899999999999999999999888899999999999999999999999877777643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=5.6e-08  Score=87.08  Aligned_cols=73  Identities=25%  Similarity=0.354  Sum_probs=57.8

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      |..+....+-.+ +....  .++.+|+|+|||+|.+++.+|+.| ++|+|+|.||..++.+++|+.+|++.++++++
T Consensus        89 ~f~~~~~~er~r-i~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~  162 (260)
T d2frna1          89 MFSPANVKERVR-MAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY  162 (260)
T ss_dssp             CCCGGGHHHHHH-HHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             cEecCCHHHHHH-HHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEE
Confidence            344444433333 33344  478999999999999999999876 69999999999999999999999997777764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.2e-06  Score=76.43  Aligned_cols=77  Identities=12%  Similarity=0.013  Sum_probs=62.8

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      .|...+.++. |...+...++..|+|||||.|..+..+++ .|++|+++|+++..++..+++...+++.+++++...-+
T Consensus        15 ~p~~~~~~~~-l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~   92 (245)
T d1nkva_          15 NPFTEEKYAT-LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA   92 (245)
T ss_dssp             SSCCHHHHHH-HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred             CCCCHHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH
Confidence            4555554544 55666667899999999999999998877 58999999999999999999988888877788876544

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.22  E-value=4.8e-06  Score=70.25  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             CCCCCceEeEEEeeeecceeeecccCCCCCCCchhHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCch
Q 020824           67 CPQSHPIIANVVENVKYPFIYSLSDLGNLPDKPHKNIVRLLKGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGM  146 (321)
Q Consensus        67 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~l~~~~~~~i~r~l~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~  146 (321)
                      ++|....+...++|....|... +.                   .|....... -.++|-..+...++..|+|||||.|.
T Consensus         7 ~~~~~~~~~~~~~g~~~~~~t~-~g-------------------vF~~~~~d~-~t~lLi~~l~~~~~~~VLDiGcG~G~   65 (194)
T d1dusa_           7 TKSDVKIVEDILRGKKLKFKTD-SG-------------------VFSYGKVDK-GTKILVENVVVDKDDDILDLGCGYGV   65 (194)
T ss_dssp             SCCCEEEEEEEETTEEEEEEEE-TT-------------------STTTTSCCH-HHHHHHHHCCCCTTCEEEEETCTTSH
T ss_pred             CccceEEEEEEECCeeEEEEcC-CC-------------------ccCCCCcCH-HHHHHHHhCCcCCCCeEEEEeecCCh
Confidence            6777888888888887665221 11                   111111111 11233334445678999999999999


Q ss_pred             HHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          147 ASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       147 ~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      .++.+++.+.+|+++|.++..++..++|++.|++.
T Consensus        66 ~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~  100 (194)
T d1dusa_          66 IGIALADEVKSTTMADINRRAIKLAKENIKLNNLD  100 (194)
T ss_dssp             HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred             hHHHHHhhccccceeeeccccchhHHHHHHHhCCc
Confidence            99999988899999999999999999999998874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.15  E-value=3.4e-06  Score=74.88  Aligned_cols=57  Identities=21%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      +.+....  .++..|+|+|||.|..++.+++.|++|+++|.+|..++..++|.+.|++.
T Consensus       112 ~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~  168 (254)
T d2nxca1         112 KALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR  168 (254)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC
T ss_pred             HHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCc
Confidence            3344444  36799999999999999999999999999999999999999999999873

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.12  E-value=2.5e-06  Score=70.37  Aligned_cols=57  Identities=11%  Similarity=-0.028  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ..+++++..+ ...++..|+|||||.|..+.++|+.|++|+++|+++..++..++...
T Consensus         7 ~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~   63 (201)
T d1pjza_           7 KDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERG   63 (201)
T ss_dssp             HHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC
T ss_pred             HHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhc
Confidence            3355566665 34688999999999999999999999999999999999999987653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.12  E-value=4.6e-06  Score=67.99  Aligned_cols=54  Identities=20%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      ++..|+|+|||.|.+++.++..|+ +|+++|-++..++.+++|++.++..+++++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~i   68 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTL   68 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhh
Confidence            678999999999999999988885 899999999999999999998887555554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=3.5e-06  Score=72.74  Aligned_cols=65  Identities=15%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++-...+..++..|+|||||.|..+..+++.+++|+++|+++..++..+++...++. +++.++..
T Consensus         7 ~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~   71 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQG   71 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-cccccccc
Confidence            455556667899999999999999999999889999999999999999988887776 45665444

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=7.7e-06  Score=68.04  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=47.5

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCc
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDL  183 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~  183 (321)
                      .++..|+|+|||.|..++.++..|++|+++|-+|..++.+++|++.|++..+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~   91 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGAR   91 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCE
T ss_pred             cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccc
Confidence            4678999999999999999999999999999999999999999999887543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.09  E-value=5.5e-06  Score=73.65  Aligned_cols=60  Identities=17%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ..+++..|+|||||.|.++..+++ .|++|+++|++|...+..+++....++.++++++..
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~  124 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG  124 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccc
Confidence            346889999999999999999887 589999999999999999988887777677777654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.09  E-value=4.2e-06  Score=71.49  Aligned_cols=65  Identities=18%  Similarity=0.083  Sum_probs=53.2

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++++. ....++..|+|||||.|.++..+++.|.+|+++|+++..++..++++..++. ++++++..
T Consensus         6 ~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~   70 (231)
T d1vl5a_           6 KLMQI-AALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQG   70 (231)
T ss_dssp             HHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEEC
T ss_pred             HHHHh-cCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-cccccccc
Confidence            44443 3345789999999999999999999899999999999999999988877765 56766554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.99  E-value=1.1e-05  Score=68.13  Aligned_cols=56  Identities=23%  Similarity=0.288  Sum_probs=46.9

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      +.++.+.+  ++++.|+|||||.|.++..+++.|++|+++|+++.+++..+++....+
T Consensus        28 ~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~   83 (226)
T d1ve3a1          28 EPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE   83 (226)
T ss_dssp             HHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc
Confidence            44555544  467899999999999999999999999999999999999988765443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=7.9e-06  Score=70.49  Aligned_cols=65  Identities=14%  Similarity=-0.028  Sum_probs=52.9

Q ss_pred             CCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          112 FRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       112 ~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      |........+.+.+..++...++..|+|+|||.|..+.++|+.|++|++||.+|..++..++...
T Consensus        24 w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          24 FHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             TCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTT
T ss_pred             CccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhh
Confidence            43334445566667777766788999999999999999999999999999999999998876543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.96  E-value=1.2e-05  Score=69.30  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      +.++..... .+...|+|||||.|..+..+++.|++|+++|+++.+++..+++...++.  ++++++.-+
T Consensus        31 ~~~~~~~~~-~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~   97 (251)
T d1wzna1          31 EEIFKEDAK-REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDV   97 (251)
T ss_dssp             HHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCG
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhh
Confidence            344444443 3567899999999999999999999999999999999999998876654  577766543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.92  E-value=1.9e-05  Score=66.26  Aligned_cols=53  Identities=17%  Similarity=0.210  Sum_probs=45.6

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +.+.|+|||||.|..+.++++.|++|+++|+++.+++.++++....++ +++++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~   82 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQT   82 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhh
Confidence            346899999999999999999999999999999999999988776665 34443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=1e-05  Score=73.55  Aligned_cols=60  Identities=27%  Similarity=0.346  Sum_probs=51.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      ++.+|+|||||.|..++.+|+.|+ +|+|+|+++. ....++++..|++.+++++++.-+.+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~   93 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEE   93 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHH
Confidence            678999999999999999999984 7999999985 56667788889998889988765544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=7.2e-05  Score=68.47  Aligned_cols=76  Identities=16%  Similarity=0.116  Sum_probs=59.2

Q ss_pred             CCCCCch--hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          111 PFRKPDI--SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       111 ~~~~p~~--~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .|..+..  .+.+.+.+..++...++.+++|+-||+|.+|+.+|+.+.+|+++|-++..++..++|...|++. +++++
T Consensus       188 sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~  265 (358)
T d1uwva2         188 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFY  265 (358)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             hhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccc-cceee
Confidence            4555432  3333333445555567899999999999999999998999999999999999999999999984 55443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.1e-05  Score=70.93  Aligned_cols=61  Identities=28%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      -++.+|+|||||.|..++.+|+.|+ +|+|+|+++.... .+++...|+..+++++.+.-+.+
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~   95 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEE   95 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHH
Confidence            4678999999999999999999985 8999999997654 45566677777888888765443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=2.9e-05  Score=66.37  Aligned_cols=64  Identities=14%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH----cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV----MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..+.  .++..|+|||||.|..+..+++    ++++|+++|+++.+++..+++++..+...+++..+
T Consensus        31 ~~~~~~~--~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~   98 (225)
T d1im8a_          31 MLAERFV--TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC   98 (225)
T ss_dssp             HHHHHHC--CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEEC
T ss_pred             HHHHHhc--CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhcc
Confidence            3444444  4678999999999999999886    47899999999999999998877555444455443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=1.8e-05  Score=67.55  Aligned_cols=51  Identities=25%  Similarity=0.302  Sum_probs=43.4

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      ..++....  .++..|+|||||.|.++..+++.|++|+++|+++..++..+++
T Consensus        33 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~   83 (246)
T d2avna1          33 GSFLEEYL--KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK   83 (246)
T ss_dssp             HHHHHHHC--CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccc
Confidence            44455554  3568999999999999999999999999999999999988865

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=2.2e-05  Score=71.48  Aligned_cols=60  Identities=27%  Similarity=0.354  Sum_probs=51.4

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEec
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSD  193 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd  193 (321)
                      ++.+|+|||||.|..++.+|+.|+ +|+++|.++ ..+..+++...|+..+++++++.-+.+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~   98 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED   98 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh
Confidence            678999999999999999999985 899999987 567778888888888889888875544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.79  E-value=3.7e-05  Score=66.46  Aligned_cols=55  Identities=7%  Similarity=-0.128  Sum_probs=47.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++..|+|||||.|.++..+++.|.+|+++|+++.+++..+++...++.  +++++..
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~   91 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQ   91 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeecc
Confidence            557999999999999999999999999999999999998887765553  5666654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=5.7e-05  Score=64.72  Aligned_cols=59  Identities=15%  Similarity=-0.001  Sum_probs=49.6

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .+...+++.|+|||||.|+.|..+++ .  +++|+++|.++..++..+++++.++. .++.+.
T Consensus        70 ~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~  131 (213)
T d1dl5a1          70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFV  131 (213)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             hhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccc
Confidence            34457899999999999999999987 3  47999999999999999999987776 455554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=4.1e-05  Score=68.15  Aligned_cols=62  Identities=16%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVT  185 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~  185 (321)
                      ++-..++..++..|+|+|||.|..|.++|+   .+++|+++|.+++.++..++|+...++.+++.
T Consensus        94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~  158 (266)
T d1o54a_          94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVT  158 (266)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred             HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcE
Confidence            344455667999999999999999999987   35899999999999999999998776544443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.75  E-value=2.7e-05  Score=71.09  Aligned_cols=64  Identities=22%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..+..++  .++.+|+|+||+.|.+++.+++.|+ +|+++|.++..++..++|..+|++.+++++++
T Consensus       137 ~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~  201 (324)
T d2as0a2         137 LALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV  201 (324)
T ss_dssp             HHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred             HHHHhhc--CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee
Confidence            4455555  3679999999999999999998875 89999999999999999999999866665543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=97.75  E-value=2.1e-05  Score=67.41  Aligned_cols=50  Identities=10%  Similarity=0.004  Sum_probs=42.1

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHh
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n  174 (321)
                      ++.+.+.-+++.|+|||||.|.++..+++.|++|+++||+++..+..+++
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~   61 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGR   61 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHH
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcc
Confidence            34444434567899999999999999998899999999999999988765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.73  E-value=5.2e-05  Score=65.80  Aligned_cols=58  Identities=14%  Similarity=0.073  Sum_probs=48.3

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++..+++.|+|||||.|+.|..+++.+++|+++|.++...+..+++...+   .++.+..
T Consensus        65 ~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~  122 (224)
T d1vbfa_          65 ELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLIL  122 (224)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEE
T ss_pred             HhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---ccccccc
Confidence            344568899999999999999999999999999999999999998876532   4566543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.68  E-value=4.8e-05  Score=67.14  Aligned_cols=59  Identities=15%  Similarity=-0.088  Sum_probs=48.0

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .++..+|.+|+|+|||.|..|.++|+   .+++|+++|.+++.++..++|++.++...++++
T Consensus        80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~  141 (250)
T d1yb2a1          80 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT  141 (250)
T ss_dssp             -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEE
T ss_pred             HcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEE
Confidence            34456899999999999999999987   358999999999999999999886544344444

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.68  E-value=7.6e-05  Score=62.49  Aligned_cols=55  Identities=18%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      -++..|+|++||.|..++.++..|+ +|+++|-++..++.+++|++.++..+++++
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i   95 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEV   95 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence            4789999999999999999999986 699999999999999999987765444443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=8.2e-05  Score=66.75  Aligned_cols=62  Identities=13%  Similarity=-0.016  Sum_probs=52.1

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ..++..+|..|+|||||+|..++++|+ .|++|+++..++.-.+..++.++..++.+++++..
T Consensus        56 ~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~  118 (285)
T d1kpga_          56 GKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL  118 (285)
T ss_dssp             TTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE
T ss_pred             HHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            334557999999999999999998876 69999999999999999998887777666666653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=6.6e-05  Score=66.79  Aligned_cols=58  Identities=22%  Similarity=0.270  Sum_probs=47.8

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .+++..+++..++..|+|||||.|..+..+++.|++|+++|+++.+++..+++...++
T Consensus        45 ~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~  102 (292)
T d1xvaa_          45 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR  102 (292)
T ss_dssp             HHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcc
Confidence            3445555544456799999999999999999999999999999999999888766544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.62  E-value=0.00013  Score=61.95  Aligned_cols=48  Identities=23%  Similarity=0.335  Sum_probs=43.5

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +|.+|+|+|||.|..++.++..|+ +|+++|-++..++..++|+..++.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~   94 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG   94 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC
Confidence            678999999999999999888884 899999999999999999887654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.62  E-value=8.1e-05  Score=64.69  Aligned_cols=46  Identities=15%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhh
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ..++.+|+|+|||.|+++..+++.  +++|+|+|.+|...+.+++...
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~  119 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA  119 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh
Confidence            358999999999999999999973  5899999999999999987654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.57  E-value=0.00011  Score=63.40  Aligned_cols=60  Identities=15%  Similarity=0.060  Sum_probs=52.1

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++..++..|+|||+|.|+.|..+++. |.+|+++|-++..++..++|+...+. .|+++++.
T Consensus        74 L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~g  134 (215)
T d1jg1a_          74 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILG  134 (215)
T ss_dssp             HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEES
T ss_pred             hccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEEC
Confidence            44568899999999999999999984 88899999999999999999987776 57777654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=6.2e-05  Score=64.69  Aligned_cols=66  Identities=24%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      --++|..+++..+..+|+|||++.|+.|+++++   .+++|+++|.+|...+..+++++..++.++|++
T Consensus        44 ~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l  112 (214)
T d2cl5a1          44 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTI  112 (214)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             HHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCcccee
Confidence            345555555444558999999999999999997   368999999999999999999988877655555

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.56  E-value=0.00011  Score=62.80  Aligned_cols=47  Identities=15%  Similarity=0.041  Sum_probs=41.1

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH-c-CCEEEEECCChHHHHHHHHhhhh
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV-M-GFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~-~-g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      ..++++|+|+|||.|..+..+++ . .++|+|+|.+|..++.++++...
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~  102 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE  102 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc
Confidence            35899999999999999999987 3 47999999999999999887653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=0.00014  Score=64.88  Aligned_cols=57  Identities=12%  Similarity=0.022  Sum_probs=48.4

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      +..++..|+|||||+|..+.++++ .|++|++++.++..++..++.++..++..++.+
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~  106 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQV  106 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhh
Confidence            446899999999999999999886 599999999999999999888877766544544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.53  E-value=8e-05  Score=64.68  Aligned_cols=46  Identities=13%  Similarity=0.035  Sum_probs=41.0

Q ss_pred             CCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhh
Q 020824          131 EGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ..+|++|+|+||+.|.++..+|+ .  +++|+|+|.+|..++.++++.+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~  119 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE  119 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH
Confidence            35899999999999999999997 3  4899999999999999987754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00024  Score=61.24  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEE
Q 020824          117 ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTV  186 (321)
Q Consensus       117 ~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~  186 (321)
                      .....-++|..+.+.-....|++||++.|+.++++++   .+++|+++|.+|+..+..++++...++.+++++
T Consensus        43 i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~  115 (219)
T d2avda1          43 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDL  115 (219)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEE
T ss_pred             cCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEE
Confidence            3344455666665544568999999999999999997   268999999999999999999988877665554

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00011  Score=61.40  Aligned_cols=48  Identities=13%  Similarity=-0.054  Sum_probs=44.0

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++.+|+|++||.|..++.++..|+ +|+++|-++..++.+++|++.++.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~   91 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA   91 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc
Confidence            568999999999999999998885 799999999999999999987665

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=7.5e-05  Score=67.93  Aligned_cols=56  Identities=20%  Similarity=0.135  Sum_probs=49.2

Q ss_pred             CCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          131 EGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       131 ~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ..++..|+|++|+.|.+++.+++.+.+|+++|-++..++..++|.+.|++ ++++++
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i  198 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVL  198 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCccee
Confidence            34689999999999999999887678999999999999999999999998 455554

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.48  E-value=0.00013  Score=63.36  Aligned_cols=58  Identities=10%  Similarity=-0.036  Sum_probs=46.1

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      .++..|+|||||.|..+..+++.| .+|+++|+++.+++..++....++...++.++..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~   81 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ   81 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc
Confidence            467999999999999988888866 5899999999999999877654444445555544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.48  E-value=0.00013  Score=63.56  Aligned_cols=58  Identities=10%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      +..+++.|++||+|.|..|..+++.+.+|+|+|.++..++.+++....+   +++++++.=
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D   75 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKD   75 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCC
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhh
Confidence            3358899999999999999999998999999999999999999875422   577777753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00022  Score=62.54  Aligned_cols=58  Identities=17%  Similarity=0.100  Sum_probs=51.6

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      +...++|||+|.|..++.+++  ++++|+++|-+++.++..++|++.|++.+++.+.+..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~  120 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  120 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeec
Confidence            446899999999998888775  5899999999999999999999999998888887653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00022  Score=63.64  Aligned_cols=159  Identities=13%  Similarity=0.218  Sum_probs=96.1

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      +|+++..++..+....  ..+..++|+|||.|..++.+++  +..+|+|+|-++..++..++|...|++ ++++++..-+
T Consensus        91 RpeTE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~  167 (274)
T d2b3ta1          91 RPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDW  167 (274)
T ss_dssp             CTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCST
T ss_pred             ccchhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccc
Confidence            4677766666666544  3557899999999999998876  568999999999999999999998887 4566655433


Q ss_pred             ecC--cceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCCCCCCcEEEEecCCch--HHHHHhhHHh
Q 020824          192 SDR--IGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPEAEPVLLLKIDVQGWE--YHVLKGATKL  267 (321)
Q Consensus       192 sd~--~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~~~~idlLKIDVEG~E--~~VL~G~~~~  267 (321)
                      -+.  ++...+-+...    ..++         ..+     .  -.+.+.+. +++..-+--.-.|.+  ..+++.+.+.
T Consensus       168 ~~~~~~~~fDlIvsNP----PYi~---------~~~-----~--~~~~~v~~-~eP~~AL~~g~dGl~~~~~i~~~a~~~  226 (274)
T d2b3ta1         168 FSALAGQQFAMIVSNP----PYID---------EQD-----P--HLQQGDVR-FEPLTALVAADSGMADIVHIIEQSRNA  226 (274)
T ss_dssp             TGGGTTCCEEEEEECC----CCBC---------TTC-----H--HHHSSGGG-SSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred             ccccCCCceeEEEecc----hhhh---------hhh-----h--cccccccc-cchhhhcccccccchHHHHHHHHHHHh
Confidence            221  12333332110    0000         000     0  01222222 211111111122332  2466777766


Q ss_pred             hhhhcCCCCEEEEEEcccchhhcCCCHHHHHHHHHcCCCe
Q 020824          268 LSRKKGESPYLIYEEDEHLLQASNSSAKEIREFLHSVGYH  307 (321)
Q Consensus       268 L~~~k~~~p~IiiE~~~~~~~~~~~~~~ei~~~L~~~GY~  307 (321)
                      |...    -.+++|.+..       ...++.++|.+.||.
T Consensus       227 L~~~----G~l~lEig~~-------q~~~v~~~l~~~gf~  255 (274)
T d2b3ta1         227 LVSG----GFLLLEHGWQ-------QGEAVRQAFILAGYH  255 (274)
T ss_dssp             EEEE----EEEEEECCSS-------CHHHHHHHHHHTTCT
T ss_pred             cCCC----CEEEEEECch-------HHHHHHHHHHHCCCC
Confidence            6653    4789998753       356899999999997

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=0.00024  Score=63.77  Aligned_cols=60  Identities=10%  Similarity=-0.084  Sum_probs=50.2

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      .++..+|..|+|||||+|..+.++|+ .|++|+++..+++-++..++.+...++..++++.
T Consensus        56 ~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~  116 (291)
T d1kpia_          56 KLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR  116 (291)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             hcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhh
Confidence            34557999999999999999998875 6999999999999999988888777775555553

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.44  E-value=0.0003  Score=63.78  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=47.3

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVG  181 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~  181 (321)
                      .++..|+|++|+.|.+++.+++.|++|+++|.++..++..++|.++|++.
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~  180 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE  180 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhccc
Confidence            46789999999999999999999999999999999999999999999885

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=0.00015  Score=61.85  Aligned_cols=56  Identities=14%  Similarity=0.099  Sum_probs=48.5

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ++.+++|||||.|.++..+|+  ++..++++|..+..+....++...+++ +|+.++..
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~   86 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNI   86 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhccc
Confidence            467999999999999999987  579999999999999999999888887 56777554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00024  Score=64.83  Aligned_cols=50  Identities=20%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             HhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhh
Q 020824          128 MKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       128 ~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .++..+|..|+|+|||.|..|+++|+   .+++|++||.+++.++..++|++.
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence            44557899999999999999999997   358999999999999999999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.40  E-value=0.00026  Score=60.07  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcC-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVMG-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNITFH  201 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~~~~  201 (321)
                      +|.+|+|+|||.|..++.++..| .+|+++|-++...+..++|..      ++.+.+.-+.+-++.....
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~~~fD~V  111 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEISGKYDTW  111 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCCCCEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcCCcceEE
Confidence            68999999999999999988887 579999999999999988753      4555555554444544433

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=0.00029  Score=62.45  Aligned_cols=53  Identities=15%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhh
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +-..++..+|.+|+|+|||.|..|+.+|+   ++++|++||.+++.++..++|++.
T Consensus        88 Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~  143 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG  143 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhh
Confidence            33445567999999999999999999997   358999999999999999999763

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=9.4e-05  Score=62.99  Aligned_cols=48  Identities=13%  Similarity=-0.023  Sum_probs=41.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcC
Q 020824          132 GKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      .++..|+|||||.|.++..+++ .+.+|+++|+++.+++..+++...++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~  107 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG  107 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc
Confidence            4678999999999999988765 45789999999999999998876554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00013  Score=62.93  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc---CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM---GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~---g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      .+++.|+|||||.|+.|..+|+.   .++|+++|.+++.++..++|+...+.
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~  126 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP  126 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCc
Confidence            57899999999999999999873   57999999999999999999875443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00027  Score=63.17  Aligned_cols=62  Identities=15%  Similarity=0.090  Sum_probs=51.4

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      .+..++++|++||+|.|..|..+++.+.+|+|+|-|+..++.|++.+..+....++++++.=
T Consensus        17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D   78 (278)
T d1zq9a1          17 AALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGD   78 (278)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC
T ss_pred             hCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHH
Confidence            34457899999999999999999988899999999999999999887654434567776653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00051  Score=57.88  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             CCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          113 RKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       113 ~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.|.+..   +++..+ ...+++++||++||.|.+|..+++  ++++|+++|.+|.+++..++++...  ..++++++.
T Consensus         7 H~pVll~---evi~~l-~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~   79 (192)
T d1m6ya2           7 HIPVMVR---EVIEFL-KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKV   79 (192)
T ss_dssp             CCCTTHH---HHHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEEC
T ss_pred             CCchHHH---HHHHhh-CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc--cccccchhH
Confidence            4576644   444443 446889999999999999998876  4789999999999999999876543  346666664

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00036  Score=59.79  Aligned_cols=47  Identities=21%  Similarity=0.063  Sum_probs=41.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhhhc
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVWFN  178 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~lN  178 (321)
                      .+++.|+|||||.|..+..+++. +.+|+++|++|...+..+++....
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~   99 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ   99 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc
Confidence            46789999999999999999885 478999999999999999886543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.27  E-value=0.00032  Score=59.64  Aligned_cols=56  Identities=18%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      ...+++|||||.|.++..+|+  +...++++|+.+..+....+.+..+++ +|+.++..
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~   88 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWV   88 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEEC
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeec
Confidence            567999999999999999987  578999999999999998888887777 57777665

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.21  E-value=0.00053  Score=59.31  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=75.6

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeEecCcceE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAVSDRIGNI  198 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Alsd~~g~~  198 (321)
                      -++|..+++......|++||.+.|+-++++|+ .  +++|+++|.+|+.++..+++++..++.++++++..         
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g---------  118 (227)
T d1susa1          48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG---------  118 (227)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES---------
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh---------
Confidence            34555554433558999999999999999996 2  68999999999999999999988777555544211         


Q ss_pred             EEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCC---CCCCcEEEEecCCchH-HHHHhhHHhhhh
Q 020824          199 TFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPE---AEPVLLLKIDVQGWEY-HVLKGATKLLSR  270 (321)
Q Consensus       199 ~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~---~~~idlLKIDVEG~E~-~VL~G~~~~L~~  270 (321)
                                 .+.                     -+|+++..+   .+..||+=||..-..+ +.++-+.++|+.
T Consensus       119 -----------~a~---------------------~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~  162 (227)
T d1susa1         119 -----------PAL---------------------PVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKV  162 (227)
T ss_dssp             -----------CHH---------------------HHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCT
T ss_pred             -----------HHH---------------------HHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCC
Confidence                       000                     035555433   2478999999887666 456655655544

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00082  Score=59.64  Aligned_cols=75  Identities=17%  Similarity=0.164  Sum_probs=59.3

Q ss_pred             CCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          114 KPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       114 ~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +|+++..++.++...... +..+++|+|+|.|..++.+++ +.++|+|+|-+|..++..++|...|++.+++.+++.
T Consensus        92 RpeTE~lv~~~~~~~~~~-~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~  167 (271)
T d1nv8a_          92 RPETEELVELALELIRKY-GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  167 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHH-TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             hhhhhhhhhhhhhhhccc-cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeec
Confidence            467766666666554433 457899999999998887776 679999999999999999999999998766665544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00032  Score=61.69  Aligned_cols=59  Identities=12%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      ...+++.|++||+|.|..|..+++.+.+|+|+|-|+..++.|++....+   +++++++.-+
T Consensus        18 ~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~   76 (252)
T d1qyra_          18 NPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDA   76 (252)
T ss_dssp             CCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCG
T ss_pred             CCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---cchhHHhhhh
Confidence            4457899999999999999999998999999999999999998754432   4677766543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.17  E-value=0.00059  Score=61.83  Aligned_cols=55  Identities=15%  Similarity=-0.017  Sum_probs=48.0

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCCC-CceEE
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRVG-DLVTV  186 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~~-~~v~~  186 (321)
                      .++..|+|+.|+.|.+++.+++.|+ +|+++|.++..++..++|.++|++. .++++
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~  199 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL  199 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEE
Confidence            3678999999999999999988775 7999999999999999999999984 34443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.12  E-value=0.00066  Score=59.94  Aligned_cols=62  Identities=13%  Similarity=0.040  Sum_probs=47.8

Q ss_pred             HHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEE
Q 020824          124 ILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVY  187 (321)
Q Consensus       124 ~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~  187 (321)
                      ++..+.+..+...|+|||||.|.++..+++   .+++|+++|+++..++..+++...++.  ++++.
T Consensus        18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~   82 (281)
T d2gh1a1          18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFL   82 (281)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEE
T ss_pred             HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccc
Confidence            334433445678999999999999999986   268999999999999999988775543  44443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=96.85  E-value=0.002  Score=55.73  Aligned_cols=59  Identities=20%  Similarity=0.045  Sum_probs=47.8

Q ss_pred             hcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          129 KKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       129 ~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ....+...|+|||||.|.++..+++  ++.+++.+|- |...+..++++...++.++++++.
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~  136 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE  136 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcc
Confidence            3445678999999999999999987  4689999995 778888888888777766776654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.85  E-value=0.0013  Score=56.57  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=39.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc----C----CEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM----G----FRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~----g----~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .+++.|+|||||.|+.|..+++.    |    .+|+++|.+++.++..++|+..
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~  132 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT  132 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhh
Confidence            57899999999999999998863    2    4899999999999999888653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0019  Score=56.58  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             CCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n  174 (321)
                      .++..|+|||||.|.++..+++.  +.+++++|+++..++..++.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~  127 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR  127 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc
Confidence            46789999999999999999874  68999999999999887654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.0013  Score=61.56  Aligned_cols=57  Identities=16%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhhh
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      .+.++++.+ +..++++|+|||||.|..++.+|+ .| .+|+++|-++..++..+++.+.
T Consensus       204 ~i~~Il~~l-~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         204 FLSDVYQQC-QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             HHHHHHHHT-TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            456666654 346889999999999999999986 46 5899999999999988877653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00078  Score=58.93  Aligned_cols=45  Identities=16%  Similarity=0.165  Sum_probs=36.5

Q ss_pred             CCCEEEEECCCCchHHHHHHH------cC--CEEEEECCChHHHHHHHHhhhh
Q 020824          133 KNGLVVDVGANVGMASFAAAV------MG--FRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~------~g--~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +...|+|||||.|.++..+++      .+  .+++++||++..++..++.++.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh
Confidence            444799999999999887753      12  5789999999999999888753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0018  Score=58.60  Aligned_cols=55  Identities=16%  Similarity=0.190  Sum_probs=44.1

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhh
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ++++++.+ +..++++|+|||||.|..++.+|+ .+ .+++++|.++..++..+++..
T Consensus       140 ~~~~~~~~-~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~  196 (328)
T d1nw3a_         140 VAQMIDEI-KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDR  196 (328)
T ss_dssp             HHHHHHHS-CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence            45555543 456889999999999999999887 45 589999999999888776654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.73  E-value=0.0016  Score=56.61  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHHc-CCEEEEECCChHHHHHHHHhhh
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAVM-GFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~-g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      .+|..+. ..+...++|||||.|..|..++.. +.+|.++||++.+++..+++..
T Consensus        84 ~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~  137 (254)
T d1xtpa_          84 NFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA  137 (254)
T ss_dssp             HHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT
T ss_pred             HHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc
Confidence            3444433 246789999999999999887754 5689999999999999887643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00056  Score=58.62  Aligned_cols=47  Identities=13%  Similarity=0.099  Sum_probs=40.8

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNR  179 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~  179 (321)
                      ++.+++|||||.|.+++.++..++ +|+++|.++.+++.+++++..+.
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            678999999999999988887664 79999999999999999876443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.60  E-value=0.00011  Score=64.65  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEE
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEA  189 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~  189 (321)
                      +.+++. +...+++.|+|||+|.|..|..+++.+.+|+|+|.++..++.+++.+..   .+++++++.
T Consensus        19 ~kIv~~-~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~   82 (245)
T d1yuba_          19 NQIIKQ-LNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQ   82 (245)
T ss_dssp             HHHHHH-CCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCS
T ss_pred             HHHHHh-cCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh---ccchhhhhh
Confidence            344443 3345789999999999999999998899999999999999888766532   246666655

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.003  Score=52.23  Aligned_cols=48  Identities=15%  Similarity=0.007  Sum_probs=43.9

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCC-EEEEECCChHHHHHHHHhhhhcCC
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGF-RVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~-~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ++..|+|+-||.|..++.++..|+ +|+.+|-++.+++.+++|++..+.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~   91 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC   91 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcc
Confidence            568999999999999999999996 899999999999999999986554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.55  E-value=0.0045  Score=53.72  Aligned_cols=60  Identities=25%  Similarity=0.082  Sum_probs=48.6

Q ss_pred             cCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEe
Q 020824          130 KEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAA  190 (321)
Q Consensus       130 ~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~A  190 (321)
                      ...+...|+|||||.|.++..+++  ++.+++++|- |...+..+++++..+..+++++....
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d  139 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGD  139 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee
Confidence            335668999999999999999987  4789999995 88898888888877776777765543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0025  Score=55.50  Aligned_cols=54  Identities=11%  Similarity=0.001  Sum_probs=42.2

Q ss_pred             HHHHHHhcC--CCCCEEEEECCCCchHHHHHHH-cCCEEEEECCChHHHHHHHHhhh
Q 020824          123 EILEKMKKE--GKNGLVVDVGANVGMASFAAAV-MGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       123 ~~L~~~~~~--~~~~~vvDIGAn~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +.+......  .++.+++|||||.|.++++.+. .+.+|+++|.++.+++.+++.+.
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~   98 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ   98 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHh
Confidence            445554433  2678999999999999876554 45689999999999999988765

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0031  Score=52.17  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             CCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824          133 KNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~  173 (321)
                      +++.|+|||||.|.++..++    +++++|++|..++..++
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~   72 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARK   72 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCCcccccccc----eEEEEeCChhhcccccc
Confidence            56789999999999887764    57899999999988764

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0057  Score=55.16  Aligned_cols=52  Identities=13%  Similarity=0.004  Sum_probs=42.3

Q ss_pred             CCCEEEEECCCCchHHHHHHHc-C-CEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAVM-G-FRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~~-g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      ++++|+|||+|.|..|..+... + .+|+|+|+++..++.|++...    .+++++++
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~   96 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILK   96 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEe
Confidence            5789999999999999988764 3 589999999999999987653    13566654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.014  Score=48.27  Aligned_cols=51  Identities=22%  Similarity=0.167  Sum_probs=41.9

Q ss_pred             HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHH
Q 020824          122 QEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       122 ~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~  173 (321)
                      ++++..+ ...+++++||+.+|.|-+|..+.+.+++|+|||-+|...+..++
T Consensus         8 ~Evl~~l-~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~   58 (182)
T d1wg8a2           8 QEALDLL-AVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG   58 (182)
T ss_dssp             HHHHHHH-TCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhc-CCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhh
Confidence            3445443 34688999999999999999998888999999999998877654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.21  E-value=0.054  Score=49.60  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             cCCCCCCchhHH--HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-cC-CEEEEECCChHHHHHHHHhhhhcCCCCce
Q 020824          109 GKPFRKPDISVT--IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-MG-FRVLSFEPVFENLQRICDGVWFNRVGDLV  184 (321)
Q Consensus       109 ~~~~~~p~~~~~--~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~g-~~ViafEP~p~~~~~L~~n~~lN~~~~~v  184 (321)
                      .+.|..|.....  +.-++-+..   ++..|+|..|+.|..++.+++ .| .+|++.|-+|...+.+++|+++|+..+..
T Consensus        22 ~~vFYNp~q~~NRDlsvl~~~~~---~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~   98 (375)
T d2dula1          22 SPVFYNPRMALNRDIVVVLLNIL---NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR   98 (375)
T ss_dssp             -CCCCCGGGHHHHHHHHHHHHHH---CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCE
T ss_pred             CCcccCHHHhhhhHHHHHHHHHh---CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccc
Confidence            467887865321  111122233   457999999999999997665 55 48999999999999999999999863211


Q ss_pred             EEEEEeEecCcceEEEEeecCCCCCccccccCcccccccCceeeEEEEEEehhhhcCC-CCCCcEEEEecCCchHHHHHh
Q 020824          185 TVYEAAVSDRIGNITFHKLVGRLDNSAVSATGAKLAFKSNEEIALQVRSIPLDEVIPE-AEPVLLLKIDVQGWEYHVLKG  263 (321)
Q Consensus       185 ~~~~~Alsd~~g~~~~~~~~~~~~~s~l~~~~~~~~~~~~~~~~v~V~~~tLD~ll~~-~~~idlLKIDVEG~E~~VL~G  263 (321)
                      .-...+......                               .+.+.......++.+ .+..|+|-||-=|.-..-|..
T Consensus        99 ~~~~~~~~~~~~-------------------------------~~~~~~~Da~~~~~~~~~~fDvIDiDPfGs~~pflds  147 (375)
T d2dula1          99 ESKGRAILKGEK-------------------------------TIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDT  147 (375)
T ss_dssp             ECSSEEEEESSS-------------------------------EEEEEESCHHHHHHHSTTCEEEEEECCSSCCHHHHHH
T ss_pred             cccccccccccc-------------------------------eeEeehhhhhhhhHhhcCcCCcccCCCCCCcHHHHHH
Confidence            111111111111                               122222232333332 256799999999999999999


Q ss_pred             hHHhhhh
Q 020824          264 ATKLLSR  270 (321)
Q Consensus       264 ~~~~L~~  270 (321)
                      +.+.++.
T Consensus       148 Ai~a~~~  154 (375)
T d2dula1         148 ALRSAKR  154 (375)
T ss_dssp             HHHHEEE
T ss_pred             HHHHhcc
Confidence            9887665

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.06  Score=47.40  Aligned_cols=61  Identities=15%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             HHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          127 KMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       127 ~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      .++...++.+|+|+.|+-|.-|..++. +  +++|+|+|.++.-.+.+++|+...++ .++.+.+
T Consensus        88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~  151 (293)
T d2b9ea1          88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAE  151 (293)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred             cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeee
Confidence            345567899999999999998888775 2  48999999999999999999988776 4555543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.074  Score=44.60  Aligned_cols=58  Identities=9%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEEEeE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYEAAV  191 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~~Al  191 (321)
                      ++..++|||+|.|.-.+.+|-  +..+++.+|.+..-...|++-+..-++ +++++++.-+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~  124 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRV  124 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCT
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccch
Confidence            567999999999999888875  578999999999999999887776565 4787776544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=93.49  E-value=0.033  Score=48.29  Aligned_cols=46  Identities=28%  Similarity=0.192  Sum_probs=41.6

Q ss_pred             CCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhhh
Q 020824          132 GKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVWF  177 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~l  177 (321)
                      +....|+|.=||.|..++.+|..|++|+++|-+|..+..++++++.
T Consensus        87 ~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r  132 (250)
T d2oyra1          87 DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR  132 (250)
T ss_dssp             TBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHH
Confidence            3445899999999999999999999999999999999999988764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=91.58  E-value=0.17  Score=44.46  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=50.9

Q ss_pred             CCc-hhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH----c---CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          114 KPD-ISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV----M---GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       114 ~p~-~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~----~---g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      -|. +...+..++..+....++.+|+|.|||.|.+...+.+    .   ..+++++|-++..+...+.|..+++.
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~  171 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ  171 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh
Confidence            343 3344566667777666788999999999998877753    1   24799999999999998888887764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.16  E-value=0.2  Score=40.74  Aligned_cols=50  Identities=14%  Similarity=0.167  Sum_probs=38.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH---cCCEEEEECCChHHHHH
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAV---MGFRVLSFEPVFENLQR  170 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~---~g~~ViafEP~p~~~~~  170 (321)
                      +.+++-.++...++..|+|.|||.|.+...+.+   ...+++++|-++.....
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~   59 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL   59 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh
Confidence            445555666667889999999999998777754   24789999999876543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=90.40  E-value=0.32  Score=41.51  Aligned_cols=55  Identities=15%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCChHHHHHHHHhhhhcCCCCceEEEE
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVFENLQRICDGVWFNRVGDLVTVYE  188 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p~~~~~L~~n~~lN~~~~~v~~~~  188 (321)
                      +...++|||+|-|.-.+.+|-  ++.+++.+|.+..-...|+.-+..=++ +++++++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~  126 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCH  126 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEe
Confidence            467999999999999888874  578999999999988888877665555 4566654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.51  Score=40.88  Aligned_cols=56  Identities=13%  Similarity=0.051  Sum_probs=47.2

Q ss_pred             HHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          125 LEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      ...++...++..|+|+.|+-|.=|..++..  +++|+|+|.++.-.+.+++++..-+.
T Consensus        94 ~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~  151 (284)
T d1sqga2          94 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM  151 (284)
T ss_dssp             HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC
T ss_pred             cccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc
Confidence            334556678999999999999988888763  48999999999999999999886665

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.06  E-value=0.47  Score=40.45  Aligned_cols=57  Identities=16%  Similarity=0.092  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          118 SVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       118 ~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      ...+++++....  .++++|+|.=||.|+....+.++|-+.++||-+++.++..++.+.
T Consensus       237 ~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         237 AKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             THHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             hHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHH
Confidence            344667776554  478999999999999999999999999999999999998877654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.60  E-value=0.4  Score=37.61  Aligned_cols=44  Identities=23%  Similarity=0.190  Sum_probs=35.7

Q ss_pred             cCCCCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHH
Q 020824          130 KEGKNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICD  173 (321)
Q Consensus       130 ~~~~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~  173 (321)
                      +..++++++=+||| +|.....+++ .|++|+++|+++.-.+.+++
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence            34577888889987 7777777776 79999999999998888765

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.57  E-value=0.36  Score=40.98  Aligned_cols=41  Identities=20%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             HHHHHHhcCCCCCEEEEECCCCchHHHHHHH--cCCEEEEECC
Q 020824          123 EILEKMKKEGKNGLVVDVGANVGMASFAAAV--MGFRVLSFEP  163 (321)
Q Consensus       123 ~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP  163 (321)
                      .+++.+-......+++|||+|.|.++..+++  ++.+++.+|-
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl  113 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL  113 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc
Confidence            4444332235668999999999999998876  6789999994

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.26  E-value=0.38  Score=40.62  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECCCh
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEPVF  165 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP~p  165 (321)
                      ...+|+|||+|.|.++..+++  ++.+++.+|--+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~  115 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH  115 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence            457899999999999998886  578999998543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.55  E-value=0.29  Score=38.64  Aligned_cols=45  Identities=16%  Similarity=0.062  Sum_probs=36.3

Q ss_pred             cCCCCCEEEEECCC-CchHHHHHHH-cCCEEEEECCChHHHHHHHHh
Q 020824          130 KEGKNGLVVDVGAN-VGMASFAAAV-MGFRVLSFEPVFENLQRICDG  174 (321)
Q Consensus       130 ~~~~~~~vvDIGAn-~G~~sl~~a~-~g~~ViafEP~p~~~~~L~~n  174 (321)
                      ...++++++-+||| +|.....+++ .|++|++++.+++-.+..++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            34578899999997 7777777776 799999999999988877653

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=87.42  E-value=0.82  Score=37.61  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhh
Q 020824          120 TIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGV  175 (321)
Q Consensus       120 ~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~  175 (321)
                      .++++++...  .+|++|+|-=||.|+....+.+.|-+.+++|-+++.++..++.+
T Consensus       201 L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence            3556665554  47899999999999999999999999999999999999987764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.40  E-value=0.39  Score=38.25  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             HHHHhcCCCCCEEEEECCC-CchHHHHHHH-cCC-EEEEECCChHHHHHHHH
Q 020824          125 LEKMKKEGKNGLVVDVGAN-VGMASFAAAV-MGF-RVLSFEPVFENLQRICD  173 (321)
Q Consensus       125 L~~~~~~~~~~~vvDIGAn-~G~~sl~~a~-~g~-~ViafEP~p~~~~~L~~  173 (321)
                      +.+..+..+|++++=+||| +|.....+++ .|+ +|+++|+++...+.+++
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            4444444578999999997 5666666666 686 89999999998888765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.89  E-value=0.96  Score=39.65  Aligned_cols=70  Identities=14%  Similarity=-0.038  Sum_probs=52.0

Q ss_pred             hcCCCCCCchhHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCChHHHHHHHHhhhhcCC
Q 020824          108 KGKPFRKPDISVTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVFENLQRICDGVWFNRV  180 (321)
Q Consensus       108 ~~~~~~~p~~~~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p~~~~~L~~n~~lN~~  180 (321)
                      +.|.+.-.+...   .+...++...+|++|+|+.|+-|.=|..++. +  .+.++|+|.++.-++.+++|+..-+.
T Consensus        94 ~~G~~~vQD~aS---~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~  166 (313)
T d1ixka_          94 LTGLIYIQEASS---MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV  166 (313)
T ss_dssp             HTTSEEECCHHH---HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred             hhceEEEecccc---cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh
Confidence            344444344332   2334455667899999999999998887775 3  47899999999999999999886665

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.43  E-value=0.83  Score=38.10  Aligned_cols=56  Identities=13%  Similarity=0.079  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHcCCEEEEECCChHHHHHHHHhhh
Q 020824          119 VTIQEILEKMKKEGKNGLVVDVGANVGMASFAAAVMGFRVLSFEPVFENLQRICDGVW  176 (321)
Q Consensus       119 ~~~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~g~~ViafEP~p~~~~~L~~n~~  176 (321)
                      +.+.+++....  .+|++|+|-=||.|...+.+.+.|-+.++||-+|..++..++.+.
T Consensus       195 ~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         195 AVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             HHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHH
T ss_pred             hHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            34566666554  478999999999999988888899999999999999999887765

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=83.62  E-value=1.1  Score=35.93  Aligned_cols=34  Identities=24%  Similarity=0.166  Sum_probs=28.9

Q ss_pred             CCCCEEEEECCCCchHHHHHHH-c--CCEEEEECCCh
Q 020824          132 GKNGLVVDVGANVGMASFAAAV-M--GFRVLSFEPVF  165 (321)
Q Consensus       132 ~~~~~vvDIGAn~G~~sl~~a~-~--g~~ViafEP~p  165 (321)
                      .++..|+|+||.-|.|+-++++ .  .++|++++-.|
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            4779999999999999999886 2  37899998665

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=80.96  E-value=0.78  Score=38.74  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             CCCEEEEECCCCchHHHHHHH--cCCEEEEECC
Q 020824          133 KNGLVVDVGANVGMASFAAAV--MGFRVLSFEP  163 (321)
Q Consensus       133 ~~~~vvDIGAn~G~~sl~~a~--~g~~ViafEP  163 (321)
                      ...+++|||+|.|.++..+++  ++.+++.+|-
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl  112 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR  112 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC
Confidence            457899999999999998876  5789999995

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=80.18  E-value=0.83  Score=39.17  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHc--CCEEEEECC
Q 020824          121 IQEILEKMKKEGKNGLVVDVGANVGMASFAAAVM--GFRVLSFEP  163 (321)
Q Consensus       121 ~~~~L~~~~~~~~~~~vvDIGAn~G~~sl~~a~~--g~~ViafEP  163 (321)
                      +..+.++.. ..+++.++|+||+-|.||.+++..  ..+|.++.-
T Consensus        55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            444445442 246789999999999999999864  245665543