Citrus Sinensis ID: 020833

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVGKVQRRKDH
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEEEEEEEccHHHHHHHHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgvdmgsmraalpSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFlfhrserpqltfSILCSFFLLsvfgcssqIFSFVgiqyssptlSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVvsepsdwklglDIGLVAVLYSAVIGTGFRVGLCTWclsrtgplyvsmfkPLAIVFSIVMDVVIVGDAFCLGRilcsdvgkvqrrkdh
Flexible Loop (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRilcsdvgkvqrrkdh
Low Complexity Region (SEG)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAlsslfflfcsflfHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVGKVQRRKDH
Disordered region (IsUnstruct)
***********LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG********
Disordered Region (DISOPRED)
************PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGE****************SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVGKVQRR***
Disordered Region (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV*********
Disordered Region (DISPRO)
*****GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL**************LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVGKVQRRK**
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVGKVQRRKDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	no	no	0.922	0.806	0.407	8e-50
Q9FL08	368	WAT1-related protein At5g	yes	no	0.940	0.820	0.379	1e-49
F4KHA8	370	WAT1-related protein At5g	no	no	0.940	0.816	0.357	2e-45
Q945L4	339	WAT1-related protein At5g	no	no	0.862	0.817	0.367	3e-45
Q9LV20	383	WAT1-related protein At3g	no	no	0.869	0.728	0.335	7e-39
Q56X95	355	WAT1-related protein At3g	no	no	0.906	0.819	0.340	1e-38
Q9M130	365	WAT1-related protein At4g	no	no	0.959	0.843	0.309	8e-38
Q9LRS5	353	WAT1-related protein At3g	no	no	0.887	0.807	0.354	3e-37
F4JK59	347	WAT1-related protein At4g	no	no	0.915	0.847	0.353	4e-37
Q8GXB4	374	WAT1-related protein At1g	no	no	0.847	0.727	0.339	3e-36

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 187/312 (59%), Gaps = 16/312 (5%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFF---LFCSFLFHR 65
           R  LP   +VI+  A V    + KAA  KG++ +V IVYS  L++L     LFCSF   R
Sbjct: 8   REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSF---R 64

Query: 66  SER-PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 124
           S   P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR
Sbjct: 65  SRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFR 124

Query: 125 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184
           +E ++++  SS AK LGT  SIGGAF+VT Y GP +I +   S S R    +P   WILG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILG 182

Query: 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSD--- 240
             FLA E F    W+I+Q  I+R++ A   +   + F++  +S   AL+ + +E +D   
Sbjct: 183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTV---VCFYSIGVSFWTALVTLFTEGNDLGA 239

Query: 241 WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD 300
           WK+  +I LV+++ S + G+     + TW L   GPL+V+MFKPL+I  ++ M V+ + D
Sbjct: 240 WKIKPNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRD 299

Query: 301 AFCLGRILCSDV 312
           +  +G ++ + V
Sbjct: 300 SLYIGSLIGATV 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 6/308 (1%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M  V  A V +  + KAA  +G++ YV + YS  +S+L  L  S +F RS R
Sbjct: 16  RDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRR 75

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +    FLL + G  SQI    GI YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 76  LPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQ 135

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +G   SI GA VV  YKGP ++   S +     + L  QL     SWI
Sbjct: 136 VRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWI 195

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA++ F+ S W+ILQ  ++  +   + ++F+   F T++S    L   S  + W 
Sbjct: 196 IGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWV 255

Query: 243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
           L  DI L A++YS V  + F     TW L   GP+Y+S+F+PL+I  ++ M  + +GDA 
Sbjct: 256 LKPDISLAAIIYSGVFVSLFSALTHTWGLHLKGPVYISLFRPLSIAIAVAMGAIFLGDAL 315

Query: 303 CLGRILCS 310
            LG ++ S
Sbjct: 316 HLGSVIGS 323

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 175/308 (56%), Gaps = 6/308 (1%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   MV V    V +  + KAA  +G++ YV + Y+  +++L  L  S +F RS+R
Sbjct: 17  RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 77  LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +GT  SI GA VV  YKGP ++ + S +     + L   L     SWI
Sbjct: 137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct: 197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query: 243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
           L   + L +V+YS  + + F   + TW L   GP+Y+S+FKPL+IV ++ M V+ +GDA 
Sbjct: 257 LKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDAL 316

Query: 303 CLGRILCS 310
            LG ++ S
Sbjct: 317 YLGSVIGS 324

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/294 (36%), Positives = 171/294 (58%), Gaps = 17/294 (5%)

Query: 17  MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSI 75
           MV+   + V    ++KAA SKG++ +V++VYS    SL  L  +F   RS   P LTFSI
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 76  LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
           LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 136 QAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 195
            AK LGT  SI GA VVT Y GP              +L+S    WI+GG  LA +  + 
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP--------------MLMSSHSDWIIGGGLLALQYILV 182

Query: 196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLY 254
           S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+ V+ 
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVA 242

Query: 255 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
           + ++ +G+ V + TW +S  GP+Y+SMFKPL+I+ + V   + +G++  LG ++
Sbjct: 243 TGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVM 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  161 bits (407), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 156/280 (55%), Gaps = 1/280 (0%)

Query: 30  VIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88
           V + A++ G++K V  VY + L+ L     ++ F + ERP LT S+L  FF L++ G  +
Sbjct: 52  VSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPPLTISLLAQFFFLALIGITA 111

Query: 89  SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
           +Q F  +G+ Y++PT ++AM N +PA TF++A   RLE ++   K   AK LGT  SIGG
Sbjct: 112 NQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGG 171

Query: 149 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK 208
           A V+T Y+G P+  +  +      +      S  LG  +L       + W +LQA +L++
Sbjct: 172 ATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLMGHCLSWAGWMVLQAPVLKQ 231

Query: 209 FAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 268
           + A L +  +  FF  I     AL V ++ ++W +     L  +LY+ +I +G  V L T
Sbjct: 232 YPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQT 291

Query: 269 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
           WC+ ++GP++V++F+PL  +    M  +I+GD    G I+
Sbjct: 292 WCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIV 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 173/314 (55%), Gaps = 23/314 (7%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS-FLFHRSE 67
           R A+    M+      V+   + KAA SKG+N Y  ++YS  + S+  L    F +    
Sbjct: 9   RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query: 68  RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 69  LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-------- 179
            +++ KSS AK +GT  S+ GA VV  Y GP +    + S  P      PQL        
Sbjct: 129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRV---FTPSSPPF-----PQLRQLLLPLS 180

Query: 180 ----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV 235
                WI+GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++  
Sbjct: 181 SSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAE 240

Query: 236 -SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMD 294
            + PS W +  DI LV ++   +   G+   +  W +   GP+Y+++F+PL+I+ +++M 
Sbjct: 241 KNNPSIWIIHFDITLVCIVVGGIFNPGYY-AIHLWAVRNKGPVYLAIFRPLSILIAVIMG 299

Query: 295 VVIVGDAFCLGRIL 308
            + +GD+F LG ++
Sbjct: 300 AIFLGDSFYLGSLV 313

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 170/323 (52%), Gaps = 15/323 (4%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P + MV++  A      ++K  +  G+N  VI  Y  A+S+LF    +F + R  RP LT
Sbjct: 10  PVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERKTRPTLT 69

Query: 73  FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
            +IL   F  ++ G S +Q F  +G+ Y+S TL+ A +++ PA TFV+A+IFR+EKLN +
Sbjct: 70  LNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRVEKLNMK 129

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPL--IGEL-SHSGSPRRLLLSPQLSWILGGFFL 188
           +K+     +G    IGGA ++T YKG PL  + +L +H        + P+ +WI+G   L
Sbjct: 130 SKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPE-NWIIGCVLL 188

Query: 189 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248
            A +    +W ++QA +  K+         L FF TI     +LI   + + W L   + 
Sbjct: 189 FAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLIKSRDITAWILTDKLD 248

Query: 249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
           +V ++Y+  +  G      +WC+ + GP++ S+F P+ ++F+ + D +I+     LG ++
Sbjct: 249 IVTIVYAGAVAQGICTVGTSWCIRKRGPIFTSIFTPVGLIFATLFDFLILHRQIFLGSVV 308

Query: 309 CSDV----------GKVQRRKDH 321
            S V          GKV+  K+ 
Sbjct: 309 GSGVVIFGLYIFLLGKVRLMKEE 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 25/310 (8%)

Query: 32  KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSILCSFFLLSVFGCSSQ 90
           K A SKG+N Y  + YS  L+SL  L   F   RS   P L+ SIL    LL + G    
Sbjct: 33  KVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRSLPPLSLSILSKIGLLGLLGSMYV 92

Query: 91  IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150
           I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK++++ +SS AK +GT  S+ GA 
Sbjct: 93  ITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGAL 152

Query: 151 VVTFYKGPPLIGELSHSGSPRRL--------LLSPQLSWILGGFFLAAEAFMNSAWFILQ 202
           VV  Y GP     +  + SP  +        L S    W++GG  L       S  FILQ
Sbjct: 153 VVVLYHGP----RVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTIRDIFVSVSFILQ 208

Query: 203 ALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWKLGLDIGLVAVLYSAVIGTG 261
           A I+  + A   + F      +I+++   L+V  + PS W +  DI L+ ++  A+I + 
Sbjct: 209 AKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWIIRFDITLITIVTMAIITSV 268

Query: 262 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV--------- 312
           + V + +W +   GPLY+++FKPL+I+ ++VM  V + D+  LG ++   +         
Sbjct: 269 YYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSLYLGCLIGGLLITLGFYAVM 327

Query: 313 -GKVQRRKDH 321
            GK    KD 
Sbjct: 328 WGKANEEKDQ 337

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 9/303 (2%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M+ +    V +  + KAA  +G + YV + Y+   ++L  L  S +F RS  
Sbjct: 13  RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct: 73  LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           +   + ++QAK +GT  SI GA V+  YKGP L+   S +        S + SWI+GG  
Sbjct: 133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT--------SFESSWIIGGLL 184

Query: 188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
           L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L    
Sbjct: 185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query: 248 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI 307
            L +V+YS +  T     + TW L   GP+Y+S+FKPL+I  ++ M  + +GD   LG +
Sbjct: 245 SLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSV 304

Query: 308 LCS 310
           + S
Sbjct: 305 IGS 307

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/289 (33%), Positives = 148/289 (51%), Gaps = 17/289 (5%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP + MV+V +         K AM  G+   +++ Y    +++     +F   R  RP++
Sbjct: 7   LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query: 72  TFSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130
           T  IL   F  S+ G + +Q+  FVG+Q SSPT++ A+ NL+PA TF+LA IFR E +  
Sbjct: 67  TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query: 131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPL-IGE----------LSHSGSPRRLLLSPQL 179
           +  S QAK +GT   + GA V++FY G  + IGE          ++  GS      S   
Sbjct: 127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSS-----SGHS 181

Query: 180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPS 239
           ++ LG F + A A   +AWFI+Q  +   FAA       +    +I   A ALI     S
Sbjct: 182 NFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTIS 241

Query: 240 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIV 288
           DW L   +  ++ LY+ V+ +     L +W + R GPLYVS+F PL +V
Sbjct: 242 DWSLSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLV 290

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.959	0.865	0.636	1e-107
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.947	0.878	0.551	1e-87
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.922	0.843	0.535	1e-84
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.919	0.840	0.537	2e-83
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.931	0.856	0.521	3e-79
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.922	0.853	0.505	7e-78
224057230	355	predicted protein [Populus trichocarpa]	0.959	0.867	0.478	2e-76
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.950	0.510	0.493	8e-76
388502250	352	unknown [Medicago truncatula]	0.950	0.866	0.493	1e-75
224099697	355	predicted protein [Populus trichocarpa]	0.968	0.876	0.474	1e-75

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/308 (63%), Positives = 240/308 (77%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MG    ++R+ LP VGMV+ +LAQ SNMEV K A+S+GINKYVIIVYSDALS+L  L CS
Sbjct: 1   MGFMPCNIRSLLPFVGMVVAMLAQASNMEVTKLALSQGINKYVIIVYSDALSTLVLLPCS 60

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
           F+ HRS+R  L FS+LC FFLLSVFG  +QI  +VG+QYSSPTL TAMLNLIPAFTF+LA
Sbjct: 61  FIIHRSDRTPLDFSLLCKFFLLSVFGWCAQICGYVGLQYSSPTLGTAMLNLIPAFTFILA 120

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           IIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  SH     +L  SPQ  
Sbjct: 121 IIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFF 180

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W++G  FLAAEA M+SAW+ILQ  IL+KF AVLII+ YL FFNT+LS  FALIVV + + 
Sbjct: 181 WMIGALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNS 240

Query: 241 WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD 300
           WK+  +IGL  +LY+AVIG  FR+ L  WCLSRTGPLYV++FKPLAI+F+++MD +I+GD
Sbjct: 241 WKIKPNIGLATILYTAVIGLAFRISLVAWCLSRTGPLYVTLFKPLAIIFAVIMDAIILGD 300

Query: 301 AFCLGRIL 308
             CLG ++
Sbjct: 301 PLCLGSLI 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 227/308 (73%), Gaps = 4/308 (1%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MGV MG++  +LP +GMVIV+  QV+NM V K AMS G++ +V+++YS+A+S++  L  S
Sbjct: 1   MGV-MGTV--SLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLS 57

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
            LFHRS RP LTFSILC FFLL++ GC +QIF + G+QYSSPTL +AMLNL+PAFTF+LA
Sbjct: 58  LLFHRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILA 117

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           +I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S S  + + S Q  
Sbjct: 118 VICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQ-IFSSQSH 176

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W+LGGF LA E+ + S W+ILQA IL+K  AVL I F+  FF +I+S A +L+   +PS 
Sbjct: 177 WVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSA 236

Query: 241 WKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD 300
           W+L LD+GL+AVLYSA++G   R+ +CTWC+ R GPL+ SMFKPL IVF+ VM V+  GD
Sbjct: 237 WRLKLDVGLLAVLYSAIVGNVIRISMCTWCVRRAGPLFCSMFKPLGIVFAFVMGVIFSGD 296

Query: 301 AFCLGRIL 308
           A  LG ++
Sbjct: 297 ALHLGSLV 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/297 (53%), Positives = 213/297 (71%), Gaps = 1/297 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GMV+V+LAQ  +M VIK AMS GINKYV++VYS ALS++  L  +   HRSERP L
Sbjct: 12  LPFLGMVLVMLAQSGSMVVIKVAMSDGINKYVMVVYSLALSTILLLPFALFLHRSERPPL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS LC FFLL++FG S QI ++VGI  SS TL++AMLNLIPAFTF+LA+IFR+E+++W 
Sbjct: 72  TFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLASAMLNLIPAFTFILALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK LGT  SIGGAFVV  YKGPP I +   S S  +L  S Q++WILGG F   +
Sbjct: 132 HSSSQAKVLGTLISIGGAFVVILYKGPP-IFKTHWSNSSNKLQFSQQINWILGGIFCVGD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + + S W+I QA +  KF AV +I+F+   F+TI    FALI V +P++W+L  DIGL+ 
Sbjct: 191 SIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKFDIGLIG 250

Query: 252 VLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
           +LY A+  T  R  LCTWC+ + GPL+ SMFKP++I+F++ M  + +GD   LG ++
Sbjct: 251 ILYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVSIIFTVFMAAIFLGDDLSLGSLI 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/296 (53%), Positives = 212/296 (71%), Gaps = 1/296 (0%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P +GMV+ +LAQ  +M VIK AM+ GINKYV++VYS ALS++  L  +   HRSERP LT
Sbjct: 13  PFLGMVMAMLAQSGSMVVIKVAMTDGINKYVMVVYSLALSTILLLPFALFLHRSERPPLT 72

Query: 73  FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWEN 132
           FS LCSFFLL+ FG S QI ++VGI  SSPTL++AMLNLIPAFTF+LA+IFR+E+++W++
Sbjct: 73  FSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLASAMLNLIPAFTFILALIFRMEEVHWKH 132

Query: 133 KSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 192
            SSQAK LGT  SI GAFVV  YKGPP+  +   S S  + L S QL+WILGG F A ++
Sbjct: 133 SSSQAKFLGTIVSIAGAFVVILYKGPPIF-KTHLSNSSNKFLFSQQLNWILGGMFCAGDS 191

Query: 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAV 252
            + S W+I QA +  K+ AV  I+F+   F+TI    FALIVV   ++W+L LDIGL+ +
Sbjct: 192 IVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKLDIGLIGI 251

Query: 253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
           +Y A+  T  R  LCTWC+ + GPL+ SMFKP+AI+FS+ M  + +GD   LG ++
Sbjct: 252 VYQAIAATLIRYILCTWCVLKAGPLFCSMFKPVAIIFSVFMGAIFLGDDLSLGSLI 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/301 (52%), Positives = 210/301 (69%), Gaps = 2/301 (0%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE 67
           M+ ALP VGMVI   AQV  M + K AMSKG++ ++ + YS+AL+SL  L  S L  R+E
Sbjct: 3   MKVALPFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRTE 62

Query: 68  RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
           RP LTFSI+C FFLL +FGC +Q F + GI  SSPTL TAMLNL+P  TF+LA+ FR+EK
Sbjct: 63  RPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEK 122

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           L+    SS AKS+GT  S+GGAF++T+YKGP ++  L+ S +    LL+   +WI+GG  
Sbjct: 123 LDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQLLTQPSNWIIGGLL 180

Query: 188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
           LAA+  M SAW I+QALIL+ + A LII+F+  FF TILS    L+V  +PS W L  +I
Sbjct: 181 LAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPNI 240

Query: 248 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI 307
            LV+VLYS V G+  +VG+ TWCL +TGP++VSMFKPL I+ +  + V+ +GD   LG I
Sbjct: 241 RLVSVLYSGVFGSALQVGISTWCLRQTGPVFVSMFKPLGIIIAAAVGVICLGDTLYLGSI 300

Query: 308 L 308
           +
Sbjct: 301 I 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  296 bits (759), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 150/297 (50%), Positives = 209/297 (70%), Gaps = 1/297 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GM++ +L Q  +M VIK AM+ G+NKYV++VYS ALSS   L      HRSE P L
Sbjct: 12  LPFLGMLMAMLTQSGSMVVIKFAMTDGMNKYVMVVYSMALSSSILLPFVLFLHRSELPLL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           T   L SFFLL++F  S+ I ++VGI+ SSPTL++A+LN+IPAFTFVLA+IFR+E+++W 
Sbjct: 72  TVPALGSFFLLALFASSAHIMAYVGIELSSPTLASAILNVIPAFTFVLALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
             SSQAK LGT  SIGGAFVV  YKGPP+    S S +  +L  S Q +WILGG FL A+
Sbjct: 132 YFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS-SYTSNKLQFSAQPNWILGGIFLVAD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           +F++S W+I QA + +K+ AV +I+F+ F F+TI    FALI V +P++W+L  D GL  
Sbjct: 191 SFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKFDRGLSV 250

Query: 252 VLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
           +LY A++ T  R  L TWC+ R GPL+ +MFKP+ I+F++ M  + +G+ F LG ++
Sbjct: 251 ILYQAIVATMLRYTLTTWCVHRAGPLFCAMFKPVGIIFTVSMSAIFLGENFGLGSLI 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/309 (47%), Positives = 210/309 (67%), Gaps = 1/309 (0%)

Query: 5   MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH 64
           M    A LP VGMV+   AQ   M + KAAMS G++ +V ++YS+A++ L  L  SFLFH
Sbjct: 1   MARKVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFH 60

Query: 65  RS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123
           RS ERP LT SI+  FFLL +FGC  Q F + GI  SSPTL TAMLNL+P  TF+LAIIF
Sbjct: 61  RSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIF 120

Query: 124 RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183
           R+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L         +L  Q +W+L
Sbjct: 121 RMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVL 180

Query: 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243
           GG  +A +    S+W I+QALIL+K++A LI++F+ FFF+TILS+  ++++  +PS W L
Sbjct: 181 GGLLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSL 240

Query: 244 GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFC 303
             +I L+AVL+S ++G  F +G+  WC+ +TGP++V++F PL IV +    V+  GDA  
Sbjct: 241 NSNIRLIAVLFSGILGNAFEIGVTAWCVHKTGPVFVAIFAPLGIVIAAAASVICFGDALD 300

Query: 304 LGRILCSDV 312
           LG ++ + V
Sbjct: 301 LGIVIGAAV 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 151/306 (49%), Positives = 216/306 (70%), Gaps = 1/306 (0%)

Query: 3   VDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFL 62
           +++      LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +  
Sbjct: 251 LNLNGTSKLLPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALF 310

Query: 63  FHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
            +RS+RP LTFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+I
Sbjct: 311 INRSQRPPLTFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALI 370

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           FR+E++ W + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WI
Sbjct: 371 FRMERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWI 429

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           LGGF  A ++ ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+
Sbjct: 430 LGGFLCAGDSLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWE 489

Query: 243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
           L LD+GL+ +LY AV   G R  L TW + R GPL+ +MFKP+ I+F++ +  + +GD F
Sbjct: 490 LKLDMGLIVILYQAVAAIGIRYFLQTWSVQRAGPLFCAMFKPIGIIFTVFLGSIFLGDDF 549

Query: 303 CLGRIL 308
            LG ++
Sbjct: 550 YLGSLI 555

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/306 (49%), Positives = 215/306 (70%), Gaps = 1/306 (0%)

Query: 3   VDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFL 62
           +++      LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +  
Sbjct: 5   LNLNGTSKLLPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALF 64

Query: 63  FHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
            +RS+RP LTFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+I
Sbjct: 65  INRSQRPPLTFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALI 124

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           FR+E++ W + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WI
Sbjct: 125 FRMERIYWRHFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWI 183

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           LGGF  A ++ ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+
Sbjct: 184 LGGFLCAGDSLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWE 243

Query: 243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
           L LD+GL+ +LY AV   G R  L TW + R GPL+ +MFKP+ I+F++ +  +  GD F
Sbjct: 244 LKLDMGLIVILYQAVAAIGIRYFLQTWSVQRAGPLFCAMFKPIGIIFTVFLGSIFFGDDF 303

Query: 303 CLGRIL 308
            LG ++
Sbjct: 304 YLGSLI 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/327 (47%), Positives = 210/327 (64%), Gaps = 16/327 (4%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE 67
           ++AA P VGMV+   AQV  M + KAAMS G+  ++ ++YS+AL+SL  L  SF  HRSE
Sbjct: 3   LKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRSE 62

Query: 68  RPQLTFSILCSFFLLSVFGCS-----SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
           RP LTF ILC FFLL +FG +       IF + GI  SS TL TAMLNLIP  TF+LA+ 
Sbjct: 63  RPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAVA 122

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+   S S  P  LL S Q +WI
Sbjct: 123 FRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHELL-SQQQNWI 181

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA +  M SAW I+QALIL+K+ A LI++F+  F  TILST   L +  +P  W 
Sbjct: 182 IGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWS 241

Query: 243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
           L   +  +AV+YS V G+ F+VG+ TWCL +TGP++V+MFKPL IV +  + ++ + D  
Sbjct: 242 LKPTVRWIAVVYSGVFGSAFQVGVSTWCLHKTGPVFVAMFKPLGIVIAAAVSIICLRDTL 301

Query: 303 CLGRILCSDV----------GKVQRRK 319
            LG ++ + V          GK +  K
Sbjct: 302 YLGSLVGATVIVIGFYSVMWGKAKEEK 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.934	0.817	0.379	1.4e-48
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.931	0.842	0.333	3.1e-44
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.915	0.847	0.330	2.8e-43
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.940	0.816	0.331	3.5e-43
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.862	0.817	0.350	5.7e-43
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.931	0.830	0.330	1.1e-39
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.931	0.847	0.330	2.3e-39
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.869	0.728	0.321	9.9e-39
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.866	0.776	0.322	1.5e-37
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.931	0.799	0.313	2.4e-37

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 117/308 (37%), Positives = 169/308 (54%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  LP   +VI+  A V    + KAA  KG++ +V IVYS                RS  
Sbjct:     8 REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT 67

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E 
Sbjct:    68 LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMES 127

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             ++++  SS AK LGT  SIGGAF+VT Y GP +I +                 WILG  F
Sbjct:   128 VSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGF 185

Query:   188 LAAEAFMNSAWFILQALILRKFAAVL-IIMFYLF--FFNTILSTAFALIVVSEPSDWKLG 244
             LA E F    W+I+Q  I+R++ A   ++ FY     F T L T F     ++   WK+ 
Sbjct:   186 LAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFT--EGNDLGAWKIK 243

Query:   245 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCL 304
              +I LV+++ S + G+     + TW L   GPL+V+MFKPL+I  ++ M V+ + D+  +
Sbjct:   244 PNIALVSIVCSGLFGSCINNTIHTWALRIKGPLFVAMFKPLSIAIAVAMGVIFLRDSLYI 303

Query:   305 GRILCSDV 312
             G ++ + V
Sbjct:   304 GSLIGATV 311

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 102/306 (33%), Positives = 164/306 (53%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V+   + KAA SKG+N Y  ++YS               +RS  
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXXXXXXXXXXXXXXXXXWIL 183
              +++ KSS AK +GT  S+ GA VV  Y GP    P                     WI+
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++   + PS W 
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWI 248

Query:   243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
             +  DI LV ++   +   G+   +  W +   GP+Y+++F+PL+I+ +++M  + +GD+F
Sbjct:   249 IHFDITLVCIVVGGIFNPGY-YAIHLWAVRNKGPVYLAIFRPLSILIAVIMGAIFLGDSF 307

Query:   303 CLGRIL 308
              LG ++
Sbjct:   308 YLGSLV 313

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 100/303 (33%), Positives = 156/303 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   M+ +    V +  + KAA  +G + YV + Y+                RS  
Sbjct:    13 RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct:    73 LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             +   + ++QAK +GT  SI GA V+  YKGP L+                   WI+GG  
Sbjct:   133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL--------VAASFTSFESSWIIGGLL 184

Query:   188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
             L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L    
Sbjct:   185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query:   248 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI 307
              L +V+YS +  T     + TW L   GP+Y+S+FKPL+I  ++ M  + +GD   LG +
Sbjct:   245 SLASVIYSGLFDTSLGSVIHTWGLHVKGPVYISLFKPLSIAIAVAMAAIFLGDTLHLGSV 304

Query:   308 LCS 310
             + S
Sbjct:   305 IGS 307

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 102/308 (33%), Positives = 161/308 (52%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   MV V    V +  + KAA  +G++ YV + Y+                RS+R
Sbjct:    17 RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct:    77 LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-----XXXXXXXXXXXXXWI 182
             +   + ++QAK +GT  SI GA VV  YKGP ++ +                      WI
Sbjct:   137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
             +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct:   197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query:   243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
             L   + L +V+YS  + + F   + TW L   GP+Y+S+FKPL+IV ++ M V+ +GDA 
Sbjct:   257 LKPGVSLASVMYSGGLVSSFGSVIHTWGLHLKGPVYISLFKPLSIVIAVAMGVMFLGDAL 316

Query:   303 CLGRILCS 310
              LG ++ S
Sbjct:   317 YLGSVIGS 324

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 103/294 (35%), Positives = 164/294 (55%)

Query:    17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSI 75
             MV+   + V    ++KAA SKG++ +V++VYS                RS   P LTFSI
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
             LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   136 QAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMN 195
              AK LGT  SI GA VVT Y GP L+                   WI+GG  LA +  + 
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGPMLMSSHSD--------------WIIGGGLLALQYILV 182

Query:   196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLY 254
             S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+ V+ 
Sbjct:   183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVA 242

Query:   255 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
             + ++ +G+ V + TW +S  GP+Y+SMFKPL+I+ + V   + +G++  LG ++
Sbjct:   243 TGILNSGYYV-IHTWAVSHKGPVYLSMFKPLSILIAAVSTFIFLGESLYLGSVM 295

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 101/306 (33%), Positives = 161/306 (52%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M++V  + V    + K A SKG+N Y  + YS               +RS  
Sbjct:    13 REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV FY GP +                        W++
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWK 242
             GG  L  +    S  FILQA I+  + A   + F Y    + + ST   ++  + PS W 
Sbjct:   193 GGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWI 252

Query:   243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
             +  DI L+ ++  A++ + + V + +W +   GPLY+++FKPL+I+ ++VM  + + D+ 
Sbjct:   253 IHFDITLITIVTMAIVTSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSL 311

Query:   303 CLGRIL 308
              LG ++
Sbjct:   312 YLGCLI 317

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 101/306 (33%), Positives = 157/306 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V    + K A SKG+N Y  + YS                RS  
Sbjct:    10 REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRS 69

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV  Y GP +                        W++
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  L       S  FILQA I+  + A   + F      +I+++   L+V  + PS W 
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF 302
             +  DI L+ ++  A+I + + V + +W +   GPLY+++FKPL+I+ ++VM  V + D+ 
Sbjct:   250 IRFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMSAVFLNDSL 308

Query:   303 CLGRIL 308
              LG ++
Sbjct:   309 YLGCLI 314

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 90/280 (32%), Positives = 147/280 (52%)

Query:    30 VIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQLTFSILCSFFLLSVFGCSS 89
             V + A++ G++K V  VY +               + ERP LT S+L  FF L++ G ++
Sbjct:    52 VSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPPLTISLLAQFFFLALIGITA 111

Query:    90 -QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
              Q F  +G+ Y++PT ++AM N +PA TF++A   RLE ++   K   AK LGT  SIGG
Sbjct:   112 NQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLVRKHGVAKVLGTLVSIGG 171

Query:   149 AFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRK 208
             A V+T Y+G P+  +                   LG  +L       + W +LQA +L++
Sbjct:   172 ATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLMGHCLSWAGWMVLQAPVLKQ 231

Query:   209 FAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 268
             + A L +  +  FF  I     AL V ++ ++W +     L  +LY+ +I +G  V L T
Sbjct:   232 YPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQT 291

Query:   269 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
             WC+ ++GP++V++F+PL  +    M  +I+GD    G I+
Sbjct:   292 WCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIV 331

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 92/285 (32%), Positives = 152/285 (53%)

Query:    30 VIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSILCSFFLLSVFGCS 88
             + K A SKG+N Y  + YS               +RS   P L+ SIL    LL   G  
Sbjct:    31 LFKVATSKGLNIYPFLSYSYLLASLLLLPSLFFTNRSRSLPPLSASILSKIGLLGFLGSM 90

Query:    89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
               I   +GI+YS+PTL++A+ N++PA TF+LA+IFR+EK++++ +SS AK +GT  S+ G
Sbjct:    91 YVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKVSFKERSSVAKVMGTILSLIG 150

Query:   149 AFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQAL 204
             AFVV FY GP +                        W++GG  L  +    S  FILQ  
Sbjct:   151 AFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLIGGAILTIQGIFVSVSFILQTH 210

Query:   205 ILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 263
             I+R++  A  + + Y+   + + S    ++  + PS W +  DI L  ++ + +I + + 
Sbjct:   211 IMREYPEAFTVSILYILCISIVTSMIGLVVEKNNPSIWIIHFDITLFTIVTTGIITSVYY 270

Query:   264 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL 308
             V + +W +    PLY+++FKPL+I+ ++VM  + + D+  LG ++
Sbjct:   271 V-IHSWAIRHKRPLYLAIFKPLSILIAVVMGTIFLNDSLYLGCLI 314

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/306 (31%), Positives = 144/306 (47%)

Query:    12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQL 71
             LP + MV+V +         K AM  G+   +++ Y                 R  RP++
Sbjct:     7 LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query:    72 TFSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130
             T  IL   F  S+ G + +Q+  FVG+Q SSPT++ A+ NL+PA TF+LA IFR E +  
Sbjct:    67 TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query:   131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPL-IGEXX-----XXXXXXXXXXXXXXXWILG 184
             +  S QAK +GT   + GA V++FY G  + IGE                      + LG
Sbjct:   127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSSSGHSNFFLG 186

Query:   185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 244
              F + A A   +AWFI+Q  +   FAA       +    +I   A ALI     SDW L 
Sbjct:   187 PFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTISDWSLS 246

Query:   245 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCL 304
               +  ++ LY+ V+ +     L +W + R GPLYVS+F PL +V   +    ++ +    
Sbjct:   247 SPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLEEKLYT 306

Query:   305 GRILCS 310
             G  + S
Sbjct:   307 GTFMGS 312

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FL08	WTR42_ARATH	No assigned EC number	0.3798	0.9408	0.8206	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	7e-50

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  169 bits (429), Expect = 7e-50
 Identities = 113/307 (36%), Positives = 174/307 (56%), Gaps = 15/307 (4%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R A+    M+    + V    + K A SKG+N Y  + YS  L+SL  L   F  +RS  
Sbjct: 10  REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS 69

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SIL    LL   G    I  ++GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 70  LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEK 129

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL---LLSPQLS---- 180
           ++++ +SS AK +GT  S+ GA VV FY GP     +  + SP  L    LSP LS    
Sbjct: 130 VSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVASSPPYLNFRQLSPPLSSSNS 185

Query: 181 -WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEP 238
            W++GG  L  +    S  FILQA I+ ++ A   + F      +I+++   L+V  + P
Sbjct: 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245

Query: 239 SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIV 298
           S W +  DI L+ ++  A+I + + V + +W +   GPLY+++FKPL+I+ ++VM  + +
Sbjct: 246 SVWIIHFDITLITIVTMAIITSVYYV-IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFL 304

Query: 299 GDAFCLG 305
            D+  LG
Sbjct: 305 NDSLYLG 311

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	100.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	100.0
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.96
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.96
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.93
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.92
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.87
COG2962	293	RarD Predicted permeases [General function predict	99.87
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.85
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.85
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.79
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.65
KOG2765	416	consensus Predicted membrane protein [Function unk	99.6
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.49
COG2510	140	Predicted membrane protein [Function unknown]	99.43
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.34
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.3
COG2510	140	Predicted membrane protein [Function unknown]	99.29
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.26
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.18
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.1
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.08
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.07
KOG2766	336	consensus Predicted membrane protein [Function unk	98.89
KOG1580	337	consensus UDP-galactose transporter related protei	98.88
PRK11272	292	putative DMT superfamily transporter inner membran	98.83
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.8
PRK15430	296	putative chloramphenical resistance permease RarD;	98.78
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.78
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.76
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.75
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.71
KOG1581	327	consensus UDP-galactose transporter related protei	98.7
PRK11689	295	aromatic amino acid exporter; Provisional	98.66
PLN00411	358	nodulin MtN21 family protein; Provisional	98.63
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.5
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.46
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.46
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.45
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.36
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.28
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.26
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.24
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.23
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.17
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.17
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.16
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.09
PRK13499	345	rhamnose-proton symporter; Provisional	98.06
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.99
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.98
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.97
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.79
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.76
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.34
COG2962	293	RarD Predicted permeases [General function predict	97.16
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.16
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.09
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	97.06
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.01
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.93
KOG1582	367	consensus UDP-galactose transporter related protei	96.73
PRK13499	345	rhamnose-proton symporter; Provisional	96.42
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.38
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.12
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.99
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	95.63
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.57
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.5
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.4
COG2076	106	EmrE Membrane transporters of cations and cationic	95.38
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.32
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.14
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.1
PRK11431	105	multidrug efflux system protein; Provisional	95.07
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.06
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.99
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.83
PRK10650	109	multidrug efflux system protein MdtI; Provisional	94.71
PRK11431	105	multidrug efflux system protein; Provisional	94.05
COG2076	106	EmrE Membrane transporters of cations and cationic	93.89
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.01
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	92.27
KOG2765	416	consensus Predicted membrane protein [Function unk	91.57
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	91.4
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	90.92
KOG2922	335	consensus Uncharacterized conserved protein [Funct	88.88
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	86.21
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	85.9
KOG1580	337	consensus UDP-galactose transporter related protei	85.15
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	82.35
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	81.56
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	80.87
KOG1581	327	consensus UDP-galactose transporter related protei	80.8

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=1e-38  Score=299.70  Aligned_cols=302  Identities=36%  Similarity=0.608  Sum_probs=241.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC   87 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~   87 (321)
                      ++.++++.|+.+.+.+++..++.|.+++.|++|..+.++|+.+|++++.++.+.++|++ +++.+++++.+..+.|++++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999998876544322 34456788888999999986


Q ss_pred             HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCC
Q 020833           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (321)
Q Consensus        88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  167 (321)
                      .++.++++|++|++++.++++.+++|+++.+++++++.|+++.++|.++.|++|+++|++|+.++...+++.... .+|+
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~  168 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSP  168 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-cccc
Confidence            677799999999999999999999999999999999777777777777788999999999999877544432100 0000


Q ss_pred             C--CC---CcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc
Q 020833          168 G--SP---RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDW  241 (321)
Q Consensus       168 ~--~~---~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~-~~~~  241 (321)
                      +  +.   .........+...|+++.++|+++||+|++++|+..+++++....++|++.++++...+.++..++. ...|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~  248 (358)
T PLN00411        169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW  248 (358)
T ss_pred             ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccc
Confidence            0  00   0000111234467999999999999999999999988887666778899888888877777765532 2233


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          242 KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       242 ~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ....+.....++|.+++ +.++|.+|++++++.||++++.+.+++|++++++|++++||++++.+++|+++
T Consensus       249 ~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~L  318 (358)
T PLN00411        249 IIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL  318 (358)
T ss_pred             eeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            22222234567888875 67899999999999999999999999999999999999999999999999998

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=8.4e-33  Score=254.28  Aligned_cols=267  Identities=12%  Similarity=0.079  Sum_probs=217.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHH
Q 020833           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS   89 (321)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~   89 (321)
                      ..-...++...++||++++++|.+.+ ++||.+++++|+.+++++++++...  ++++ ..+++++.+....|.++ ..+
T Consensus         7 ~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~~~   82 (292)
T PRK11272          7 LPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLL--RGHP-LPTLRQWLNAALIGLLLLAVG   82 (292)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH--hCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence            33456677888999999999999876 6999999999999999998887543  2222 23466777788888887 677


Q ss_pred             HHHHHHhh-cccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCC
Q 020833           90 QIFSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG  168 (321)
Q Consensus        90 ~~~~~~al-~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~  168 (321)
                      +.+++++. ++++++.++++.++.|+++++++.+ +|||++++      +++|++++++|+.++...  .+         
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~--~~---------  144 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG--GN---------  144 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC--cc---------
Confidence            88899999 9999999999999999999999986 69998765      589999999999876411  00         


Q ss_pred             CCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhH
Q 020833          169 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG  248 (321)
Q Consensus       169 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~  248 (321)
                              . .+...|+++.++++++||.|++..|+..++  ++...+.+++.+++..+.+.....+.+...  ..+...
T Consensus       145 --------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  211 (292)
T PRK11272        145 --------L-SGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSG  211 (292)
T ss_pred             --------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHH
Confidence                    0 122469999999999999999998886544  244567788888888877766544322111  112346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      |..++|.++++++++|.+|++++++.++++++.+.+++|+++++++++++||++|+.+++|+++
T Consensus       212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~l  275 (292)
T PRK11272        212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGV  275 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999887

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=4.4e-32  Score=250.33  Aligned_cols=266  Identities=18%  Similarity=0.167  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~~   91 (321)
                      +.+..+.++++||.+++++|.+++ ++||.++.++|+.++++.+.++.   .++   +.+++   .....|++. ..++.
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~---~~~---~~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV---ARP---KVPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh---cCC---CCchH---HHHHHHHHHHHHHHH
Confidence            346688899999999999999986 49999999999999887666543   121   11222   234456655 45566


Q ss_pred             HHHHhhcc-cchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCC
Q 020833           92 FSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (321)
Q Consensus        92 ~~~~al~~-~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~  170 (321)
                      +++.+++| .++++++++.++.|+++.+++++++|||++.+      +++|++++++|+.++..  + +.          
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~--~-~~----------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE--D-SL----------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc--c-cC----------
Confidence            77889998 58899999999999999999999999998765      58999999999988762  1 10          


Q ss_pred             CcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhccCC---CCccccc
Q 020833          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLGL  245 (321)
Q Consensus       171 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~~~~  245 (321)
                           ........|+++.++++++||+|++++|+..++.++  ......++...+.+.....+...+++.   .++...+
T Consensus       136 -----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (299)
T PRK11453        136 -----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID  210 (299)
T ss_pred             -----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence                 011122479999999999999999999998765432  234456666666555544444443321   1111122


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          246 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       246 ~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ...|..++|+|+++|+++|.+|++++++.++++++.+.+++|+++.++|++++||+++..+++|+++
T Consensus       211 ~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~l  277 (299)
T PRK11453        211 MTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVL  277 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3468899999999999999999999999999999999999999999999999999999999999887

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=3.6e-32  Score=250.44  Aligned_cols=271  Identities=14%  Similarity=0.109  Sum_probs=201.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~   88 (321)
                      |.++++.++.+.++||++++.+|.++++ +||..+.++|+.++++++.++.   ++++.++.+   + +....+.++ ..
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~---~-~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFP---K-RYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccccccccc---H-HHHHHHhHHHHH
Confidence            5677889999999999999999999865 9999999999999999888652   122111111   2 233444444 67


Q ss_pred             HHHHHHHhhcc----cchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCC
Q 020833           89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (321)
Q Consensus        89 ~~~~~~~al~~----~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~  164 (321)
                      ++.+++.|++|    .++++++++.++.|+++.+++++++|||++++      |++|++++++|+.++... +++...  
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~--  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL--  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence            77777777754    57788899999999999999999999998765      589999999999887621 110000  


Q ss_pred             CCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 020833          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG  244 (321)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~  244 (321)
                             .+...+..+...|+++.++|+++||+|+++.|+..++. ++.+..   ...+.+.+.+.....+....  +. 
T Consensus       145 -------~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~--~~-  210 (295)
T PRK11689        145 -------AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAM--VF-  210 (295)
T ss_pred             -------hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccc--cC-
Confidence                   00000111224699999999999999999999987765 455432   22333333333333222111  12 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          245 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       245 ~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +...|..++|.++ +++++|.+|++++|+.++++++.+.+++|++++++|++++||+++..+++|+++
T Consensus       211 ~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~l  277 (295)
T PRK11689        211 SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAM  277 (295)
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            1245778888885 789999999999999999999999999999999999999999999999999998

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=100.00  E-value=1.8e-31  Score=245.87  Aligned_cols=269  Identities=12%  Similarity=0.027  Sum_probs=200.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CCCHHHHHHHHHHH
Q 020833            7 SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP---QLTFSILCSFFLLS   83 (321)
Q Consensus         7 ~~~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~~~g   83 (321)
                      +.++.|+++.++++.++||.+++++|.. + ++||.++.++|+.++.+++.++...+++++..   ..+++++.. ...+
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   79 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVS   79 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHH
Confidence            4477899999999999999999999985 4 59999999999999998887765443211110   112333333 3355


Q ss_pred             HHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcC
Q 020833           84 VFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG  162 (321)
Q Consensus        84 ~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~  162 (321)
                      .++ ..++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|++++...   +   
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~---~---  147 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWT---F---  147 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHH---c---
Confidence            555 888999999999999999999999999999999999999998765      589999999999887521   0   


Q ss_pred             CCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 020833          163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDW  241 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~  241 (321)
                                     +..    ..+.++++++||.|+++.|+..++. .+....+.|++.++.....+.   .+.+...+
T Consensus       148 ---------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  205 (296)
T PRK15430        148 ---------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHM  205 (296)
T ss_pred             ---------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccc
Confidence                           001    1467889999999999988865321 123444556665554432221   11111111


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          242 KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       242 ~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      +..+...+..+.+.|+ .+.++|.+|++++++.+++++|.+.|++|+++.++|++++||+++..+++|+++.
T Consensus       206 ~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI  276 (296)
T PRK15430        206 GQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI  276 (296)
T ss_pred             cCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            1111122333444555 6889999999999999999999999999999999999999999999999999883

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=100.00  E-value=9.7e-31  Score=236.06  Aligned_cols=253  Identities=17%  Similarity=0.195  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccch
Q 020833           24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP  102 (321)
Q Consensus        24 wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~al~~~~a  102 (321)
                      ||.+++.+|.+++++.||.+..++|+..+.+++.++...  |     .+++++.+....|.++ ..++.++++|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877999999999999998888776432  2     1344566677788777 8999999999999999


Q ss_pred             hhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhh
Q 020833          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (321)
Q Consensus       103 ~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (321)
                      ++++++.++.|+++++++.+++|||++++      +++|+.++++|+.++.. ++ +                  ..+..
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~-~------------------~~~~~  127 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG-N------------------LSINP  127 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC-c------------------ccccH
Confidence            99999999999999999999999998765      58999999999988752 11 0                  11236


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHH
Q 020833          183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  261 (321)
Q Consensus       183 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~  261 (321)
                      .|+.+.++++++|+.+.+..|+..++.+ ++...+.+++.++.++..+.....+++. .+   +...|..+++.+++++.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA  203 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence            7999999999999999999999887653 2345556788888888877766543322 11   23457788999999999


Q ss_pred             HHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          262 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       262 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      ++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++.
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li  255 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALI  255 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999873

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=100.00  E-value=2.8e-30  Score=237.62  Aligned_cols=263  Identities=11%  Similarity=0.064  Sum_probs=209.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS   88 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~   88 (321)
                      ++.+++..++++.+.|+.++.++|.+.++ .||.++.++|+.++++++.++..  ++++  +.++|+++.....|++...
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~~~   83 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSLGG   83 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999875 99999999999999998887642  1221  2356677777788887777


Q ss_pred             HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCC
Q 020833           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG  168 (321)
Q Consensus        89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~  168 (321)
                      .+.+++++++++|++.++++.++.|+++.+++    +||..        +..++.++++|+.++.. .+.+         
T Consensus        84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~---------  141 (293)
T PRK10532         84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD---------  141 (293)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC---------
Confidence            78899999999999999999999999998775    24321        24567888999988652 1111         


Q ss_pred             CCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhH
Q 020833          169 SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG  248 (321)
Q Consensus       169 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~  248 (321)
                             . +.....|+++.++++++||+|++..|+..++. ++... .++.+++++++.+.....++ ...++   ...
T Consensus       142 -------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~---~~~  207 (293)
T PRK10532        142 -------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAG-EALWH---WSI  207 (293)
T ss_pred             -------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccC-cccCC---HHH
Confidence                   0 11125699999999999999999999988776 45554 56667777777766654332 11111   234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      |..++|+|+++|+++|.+|+++++|.+++++|.+.++||+++.++|++++||+++..+++|+++
T Consensus       208 ~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~l  271 (293)
T PRK10532        208 LPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGA  271 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            6667899999999999999999999999999999999999999999999999999999999987

>TIGR00688 rarD rarD protein

Probab=99.96  E-value=1.2e-27  Score=216.04  Aligned_cols=248  Identities=10%  Similarity=0.025  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC----C-CCCCHH-HHHHHHHHHHH
Q 020833           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE----R-PQLTFS-ILCSFFLLSVF   85 (321)
Q Consensus        12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~----~-~~~~~~-~~~~~~~~g~~   85 (321)
                      |+++.+++++++||.+++++|. .+ ++||.++.++|++++.+++.++...++|++    + ++.+++ .+......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5788999999999999999998 44 499999999999999988877654432211    1 111122 23345667777


Q ss_pred             HHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCC
Q 020833           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (321)
Q Consensus        86 g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  165 (321)
                      ...++.++++|++++++++++++.+++|+++++++++++|||++++      +++|++++++|+.++...   .      
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~---~------  144 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL---K------  144 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH---c------
Confidence            7889999999999999999999999999999999999999999765      589999999999887521   0      


Q ss_pred             CCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc
Q 020833          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL  245 (321)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~  245 (321)
                                 .+..     .+.++++++||.|.+..|+..++ + ........ +.......+..+. .+.+.....++
T Consensus       145 -----------~~~~-----~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~  204 (256)
T TIGR00688       145 -----------GSLP-----WEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLLQ-TDFATVQQTNP  204 (256)
T ss_pred             -----------CCch-----HHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHHH-hccCcccccCc
Confidence                       0011     35788999999999998886543 2 22222111 1111111111111 11111001112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHH
Q 020833          246 DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI  297 (321)
Q Consensus       246 ~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~i  297 (321)
                      ..+|..+++.|++ +.++|.+|++++|+.++++++++.|++|+++.+++++.
T Consensus       205 ~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       205 FPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            2367888888985 88999999999999999999999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.96  E-value=5.1e-27  Score=216.84  Aligned_cols=259  Identities=14%  Similarity=0.132  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 020833           25 VSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL  104 (321)
Q Consensus        25 g~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~  104 (321)
                      -.....-|.++++-.+|..+.++|+.++.+.+.+... .+.+++++.+++++++....|+++..++.+.++|++|++++.
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~   93 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSF   93 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3344678999875467999999999998876655421 122223456788999999999999888899999999999999


Q ss_pred             HhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHH
Q 020833          105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG  184 (321)
Q Consensus       105 a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  184 (321)
                      ++++.++.|+++++++++++|||++.+      +++|++++++|+.+.. .  .+                 .+ ....|
T Consensus        94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~--~~-----------------~~-~~~~G  146 (302)
T TIGR00817        94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D--TE-----------------LS-FNWAG  146 (302)
T ss_pred             HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C--Cc-----------------cc-ccHHH
Confidence            999999999999999999999998765      5899999999997643 1  11                 11 12569


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHhccCCC---Ccccc-chhHHHHHHHHHHH
Q 020833          185 GFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPS---DWKLG-LDIGLVAVLYSAVI  258 (321)
Q Consensus       185 ~~l~l~aa~~~a~~~vl~~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~---~~~~~-~~~~~~~l~~~g~~  258 (321)
                      +++.++|+++||+|+++.|+..+  ++ |+.+.+.|++..+.+.+.+.+...|+.+.   ++... .......+.+..++
T Consensus       147 ~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (302)
T TIGR00817       147 FLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLV  225 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHH
Confidence            99999999999999999999887  55 67889999999999999998876653210   01000 00000011111222


Q ss_pred             HHHHHH----HHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          259 GTGFRV----GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       259 ~t~~~~----~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+..++    .++++++++.+|++.+.+.+++|++++++|++++||++|..+++|+++
T Consensus       226 ~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~l  283 (302)
T TIGR00817       226 AAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGI  283 (302)
T ss_pred             HHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHH
Confidence            332233    355579999999999999999999999999999999999999999988

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.94  E-value=1.6e-25  Score=204.80  Aligned_cols=268  Identities=13%  Similarity=0.051  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFGCSSQIF   92 (321)
Q Consensus        14 ~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (321)
                      .+..+.++++|+......|...++ .++  ..+++...+.+++.++...+. ++.++..+++.+......++.+..++.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            456788999999999999964443 344  458888777777777654321 2222222333343444445555888999


Q ss_pred             HHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCc
Q 020833           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (321)
Q Consensus        93 ~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~  172 (321)
                      +++|+++.+++.++.+.++.|+++.+++++++|||++.+      +++|+.+++.|+.++..   ++.            
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~---~~~------------  138 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL---SRF------------  138 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc---ccc------------
Confidence            999999999999999999999999999999999998765      58999999999988752   110            


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHH
Q 020833          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGL  249 (321)
Q Consensus       173 ~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~  249 (321)
                          .. ....|+.+.++++++|++|++..|+..++.++   ....+.+++..++..........+...  +. .....+
T Consensus       139 ----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~  210 (281)
T TIGR03340       139 ----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQI  210 (281)
T ss_pred             ----cc-cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHHH
Confidence                01 12357788999999999999988776444321   112233333333222222222112111  11 112345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          250 VAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       250 ~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      ..+++.+.+++.++|.+|++++++.++++++.+.+++|+++.++|++++||+++..+++|+++.
T Consensus       211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~li  274 (281)
T TIGR03340       211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCII  274 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            6678889999999999999999999999999999999999999999999999999999999873

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.93  E-value=7.2e-24  Score=199.50  Aligned_cols=272  Identities=15%  Similarity=0.150  Sum_probs=206.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHHH
Q 020833           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFGC   87 (321)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~g~   87 (321)
                      .+.....+....+-.......|.+++. +| |..+..+|++++.++...+... +.+++++.  .+++++..+..|+++.
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            344444444445556667889999875 99 9999999999998765544322 22222333  2446788889999995


Q ss_pred             HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCC
Q 020833           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (321)
Q Consensus        88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  167 (321)
                      ..+...+.|+++++++.+.++.++.|++++++++++++||++++      +++++++++.|+.+...   .+        
T Consensus       126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~--------  188 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KE--------  188 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---cc--------
Confidence            45666779999999999999999999999999999999998765      58999999999988652   11        


Q ss_pred             CCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHhccCC--C
Q 020833          168 GSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP--S  239 (321)
Q Consensus       168 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~------~~~~~~~~~~l~~~i~~~~~~l~~~~~~--~  239 (321)
                               .+. ...|++++++|+++||+|+++.|+..++.+      ++.....++..++.++++|+....|...  .
T Consensus       189 ---------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~  258 (350)
T PTZ00343        189 ---------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVP  258 (350)
T ss_pred             ---------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence                     112 357999999999999999999999876532      3445556678899999998887665321  1


Q ss_pred             Cccc---c-chhHHHHHHHHHHHHHHHHHHHHHH----HhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHh
Q 020833          240 DWKL---G-LDIGLVAVLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSD  311 (321)
Q Consensus       240 ~~~~---~-~~~~~~~l~~~g~~~t~~~~~l~~~----~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~  311 (321)
                      .+..   . ....+..+++. ++.+++.|.+|+.    ++++.+|.+.+...+++|++++++|++++||++|..+++|++
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~  337 (350)
T PTZ00343        259 VWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMA  337 (350)
T ss_pred             HHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHH
Confidence            1100   0 01122344554 5567999999985    999999999999999999999999999999999999999998


Q ss_pred             h
Q 020833          312 V  312 (321)
Q Consensus       312 l  312 (321)
                      +
T Consensus       338 l  338 (350)
T PTZ00343        338 V  338 (350)
T ss_pred             H
Confidence            7

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=3e-22  Score=182.32  Aligned_cols=270  Identities=17%  Similarity=0.243  Sum_probs=200.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~   87 (321)
                      +........++....|+.+....|...+...++....+.|+..+.++..+.... ++..+.+.+ +++....+.+.++ .
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~   81 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPAL-RPWLLLLLLALLGLA   81 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccccc-cchHHHHHHHHHHHH
Confidence            345567777888899999999999986544677777788999988884444221 111111111 1233445555555 8


Q ss_pred             HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHH-HHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (321)
Q Consensus        88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~-l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  166 (321)
                      .++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.++.++++|+.++...   +.      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~---~~------  146 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLG---GG------  146 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecC---CC------
Confidence            8999999999999999999999999999999997 6679998765      589999999999887621   10      


Q ss_pred             CCCCCcccCCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHhccCCCCcccc
Q 020833          167 SGSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLG  244 (321)
Q Consensus       167 ~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~l~~~~~~~~~~~~  244 (321)
                                .+.. ...|+.+.++++++||++.+..|+.. +. ++..... +++...  .............  . ..
T Consensus       147 ----------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~  209 (292)
T COG0697         147 ----------GGGILSLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLLLA--LLLLLLFFLSGFG--A-PI  209 (292)
T ss_pred             ----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHH--HHHHHHHHhcccc--c-cC
Confidence                      0111 46899999999999999999999877 43 3444444 444412  2222122111111  1 11


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          245 LDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       245 ~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ....+..+.+.|++++.++|.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|+++
T Consensus       210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~l  277 (292)
T COG0697         210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL  277 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            23457788999999999999999999999999999999999999999999999999999999999876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.87  E-value=1.5e-19  Score=167.19  Aligned_cols=269  Identities=16%  Similarity=0.179  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 020833           23 AQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYS  100 (321)
Q Consensus        23 ~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~  100 (321)
                      +-.++...+....+.+.+ |..-.++-+..-.++..+...+++++ +..+..++++.++++++++....+++...|++||
T Consensus        24 ~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT  103 (334)
T PF06027_consen   24 CITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYT  103 (334)
T ss_pred             HHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            334455555554454544 43333444344344444443332221 2222234567778889999988889999999999


Q ss_pred             chhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcch
Q 020833          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS  180 (321)
Q Consensus       101 ~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (321)
                      +.+.+.++..+.-+++++++++++|||.++.      |++|+++++.|+.++...+  ....          .+...+.+
T Consensus       104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD--~~~~----------~~~~~~~~  165 (334)
T PF06027_consen  104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSD--VLSG----------SDSSSGSN  165 (334)
T ss_pred             cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeec--cccc----------ccCCCCCc
Confidence            9999999999999999999999999998764      6899999999998876431  1110          01123345


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CCccccchhHHHHHHHHHHHH
Q 020833          181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAVLYSAVIG  259 (321)
Q Consensus       181 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~g~~~  259 (321)
                      ...||+++++||+.||+++++.++..|+. +......+..++|.+++.+.....|... ...++.+ ..+..++ ...++
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~-~~~~~~v-~~~~~  242 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTS-QVIGLLV-GYALC  242 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCCh-hhHHHHH-HHHHH
Confidence            58999999999999999999999999987 4667778888899998888877776532 2222222 1222222 22225


Q ss_pred             HHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          260 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       260 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ...-|.+....++..+|+...+-.....+++++++++++||++++..++|.++
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~l  295 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFAL  295 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHH
Confidence            56667788889999999999998889999999999999999999999999887

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.87  E-value=1.7e-19  Score=159.97  Aligned_cols=266  Identities=12%  Similarity=0.081  Sum_probs=207.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER---PQLTFSILCSFFLLSVFG   86 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~g   86 (321)
                      ..++++..+.+.++||......|.. + +.|+.++..+|..-+..++..+....++.+.   ...+.|.+....+.+.+-
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4688999999999999999999985 5 4999999999999999988876555433221   122344556666677777


Q ss_pred             HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  166 (321)
                      ..++..|.||.+.-..-++|.=.+..|++.++++.+++|||+++      .|++++.++.+||.......|         
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g---------  147 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLG---------  147 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcC---------
Confidence            89999999999999999999999999999999999999999864      579999999999988763211         


Q ss_pred             CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccch
Q 020833          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD  246 (321)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~  246 (321)
                                 +.++     ..+.=|++|+.|..+-| ..+-  |+.+-....++.-...++...+..++++.......+
T Consensus       148 -----------~lpw-----val~la~sf~~Ygl~RK-~~~v--~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~  208 (293)
T COG2962         148 -----------SLPW-----VALALALSFGLYGLLRK-KLKV--DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNAN  208 (293)
T ss_pred             -----------CCcH-----HHHHHHHHHHHHHHHHH-hcCC--chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCc
Confidence                       2222     45677889999997633 2332  455666677776666666666655544320111223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          247 IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       247 ~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ..+..++..|. .|+++..++..+.|+++-+..+..+|++|..-.+++++++||+++..+.+.-++
T Consensus       209 ~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~  273 (293)
T COG2962         209 SLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAF  273 (293)
T ss_pred             hHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            45666777787 689999999999999999999999999999999999999999999999988776

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.85  E-value=3.3e-19  Score=163.80  Aligned_cols=268  Identities=12%  Similarity=0.088  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (321)
                      +++..++++++||++++..|.. . +.++.++.  |..++.+++..+....+ +.+ +..++.+..-++.|++-...+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~-~~~-~~~~~~~~~g~l~G~~w~ig~~~   75 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFV-LPE-FWALSIFLVGLLSGAFWALGQIN   75 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHh-CCc-ccccHHHHHHHHHHHHHHhhhhh
Confidence            3677889999999999999985 3 68888886  88888887776554432 211 11233333334444444667799


Q ss_pred             HHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCC
Q 020833           93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (321)
Q Consensus        93 ~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  171 (321)
                      ++.+.++++.+.+..+.+ +.|++..+.+.+++|||.+.+++  ..-++|+++.++|+.++...++.+.           
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~-----------  142 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA-----------  142 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc-----------
Confidence            999999999999999988 88889999999999999876531  2238899999999888652211000           


Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHhccCCCCccccchhH
Q 020833          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNTILSTAFALIVVSEPSDWKLGLDIG  248 (321)
Q Consensus       172 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l---~~~i~~~~~~l~~~~~~~~~~~~~~~~  248 (321)
                        ++....+...|+.+.++|+++|+.|.+..|..  ++ ||.+.++++..   +++++.....  .+..  +++  ....
T Consensus       143 --~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~  211 (290)
T TIGR00776       143 --GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAI  211 (290)
T ss_pred             --ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHH
Confidence              00000234679999999999999999998865  34 56766544443   3333222211  1111  121  1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-ccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhh----HHHhh
Q 020833          249 LVAVLYSAVIGTGFRVGLCTWCLS-RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI----LCSDV  312 (321)
Q Consensus       249 ~~~l~~~g~~~t~~~~~l~~~~l~-~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~----iG~~l  312 (321)
                      +..++ .|++ +.+++.+|..+.+ +.++++.+.+.+.+|+.+.+++++++||+.+..++    +|+++
T Consensus       212 ~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~l  278 (290)
T TIGR00776       212 LLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIIL  278 (290)
T ss_pred             HHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHH
Confidence            44445 8887 7999999999999 99999999999999999999999999999999999    99887

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.85  E-value=5.5e-19  Score=152.98  Aligned_cols=260  Identities=13%  Similarity=0.094  Sum_probs=203.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (321)
                      |++++..+...--....++|...+. ..|.-.+.+|..++.++++.+.    |..+.+.+++++......|+.-..-|.+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsLg~MNl~   87 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSLGGMNLL   87 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHHHHHHHH
Confidence            6777777776555567788887765 9999999999999999998763    2223456777888888888876566789


Q ss_pred             HHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCc
Q 020833           93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRR  172 (321)
Q Consensus        93 ~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~  172 (321)
                      +|.+++.+|.+.+..+-++-|+..+.++.    .|.        ...+-+.+++.|+.++.-. +.              
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~--------~d~vwvaLAvlGi~lL~p~-~~--------------  140 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RRL--------RDFVWVALAVLGIWLLLPL-GQ--------------  140 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHhc----cch--------hhHHHHHHHHHHHHhheec-cC--------------
Confidence            99999999999999999999988776542    221        2356678888998887511 11              


Q ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHH
Q 020833          173 LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAV  252 (321)
Q Consensus       173 ~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l  252 (321)
                         +.+.....|..+.+.++.+|+.|.+..+|..+.. +..+-+...+.+++++..|+...... +.-++   +.....-
T Consensus       141 ---~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag-~~l~~---p~ll~la  212 (292)
T COG5006         141 ---SVWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG-PALFS---PSLLPLA  212 (292)
T ss_pred             ---CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc-hhhcC---hHHHHHH
Confidence               1122336899999999999999999998887654 34455688999999988888764322 11111   1223445


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       253 ~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +-.+++++.+.|.+=..++++.++.+.+..+.+||.++.+.|++++||++|..|++|++.
T Consensus       213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~  272 (292)
T COG5006         213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAA  272 (292)
T ss_pred             HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999887

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.79  E-value=2.4e-20  Score=162.37  Aligned_cols=280  Identities=13%  Similarity=0.093  Sum_probs=201.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS   88 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~   88 (321)
                      +..++.+.+.++ ..+.+..+++|..+  +.+|.+....|+..--++-.+...+.+..-..+...|  +.++++|+.|+.
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~t  109 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFT  109 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhh
Confidence            344555655566 55555555555544  3799999999966655555554333221111111222  346789999977


Q ss_pred             HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCC
Q 020833           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSG  168 (321)
Q Consensus        89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~  168 (321)
                      .....||+++|.+.++|+++.++.|++|+++++.++|||.+.      .+.+|..+.+.|+++++  ++|.+ ++     
T Consensus       110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv--RPpFl-FG-----  175 (346)
T KOG4510|consen  110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV--RPPFL-FG-----  175 (346)
T ss_pred             HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe--cCCcc-cC-----
Confidence            788999999999999999999999999999999999999864      46899999999999987  34433 11     


Q ss_pred             CCCcc-cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchh
Q 020833          169 SPRRL-LLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI  247 (321)
Q Consensus       169 ~~~~~-~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~  247 (321)
                      +++.+ ++++-.....|...++.+++.-|.-.++.|++.|+. |....+.|..+++.+..++.....+  .-+++.. ..
T Consensus       176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig--~~~lP~c-gk  251 (346)
T KOG4510|consen  176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG--AVQLPHC-GK  251 (346)
T ss_pred             CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc--ceecCcc-cc
Confidence            11111 112212235678888999988888888889888886 4444556777777777766554332  1123222 24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          248 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       248 ~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +|..++.+|++ +.+++.+.+.++++-.|..++...+.+.++|.++.++++||.||+..++|++.
T Consensus       252 dr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~  315 (346)
T KOG4510|consen  252 DRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM  315 (346)
T ss_pred             ceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee
Confidence            46666778884 57889999999998888899999999999999999999999999999999877

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.65  E-value=1.7e-13  Score=126.79  Aligned_cols=251  Identities=15%  Similarity=0.163  Sum_probs=187.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHH
Q 020833           41 KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA  120 (321)
Q Consensus        41 p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~  120 (321)
                      |..+++..+....++-.+.....++++   .+++.+..+...+++......+-+.+++|+|...-.++-.+-|+.+++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~  108 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFPK---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILG  108 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccccC---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence            888999998888876665544322122   22333455677888888888999999999999988888899999999999


Q ss_pred             HHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHH
Q 020833          121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI  200 (321)
Q Consensus       121 ~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v  200 (321)
                      .+++++|.+.+      |+.++++-.+|+.+....+..+.+           +......+...|+++.+++.++.+...+
T Consensus       109 ~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~~ll~~sl~~~a~~~~  171 (303)
T PF08449_consen  109 VLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGIILLLLSLLLDAFTGV  171 (303)
T ss_pred             HHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHHHHHHHHHHHHHHHHH
Confidence            99998887654      689999999999887643221100           0011112223499999999999999999


Q ss_pred             HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHH--hccCCCCccc--cchhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 020833          201 LQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWKL--GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG  275 (321)
Q Consensus       201 l~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~--~~~~~~~~~~--~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~  275 (321)
                      .+++..++++ ++...+++..+++.+...+....  .++....++.  ..+..+..++..++ ++.++.....+..++.|
T Consensus       172 ~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~  250 (303)
T PF08449_consen  172 YQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFS  250 (303)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            9999987765 56788899999998888877776  3221111111  11223444444454 55677777778899999


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          276 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       276 a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      |...+.+..+.-+++++++++++|+++++.+++|.++
T Consensus       251 al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~l  287 (303)
T PF08449_consen  251 ALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVL  287 (303)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHH
Confidence            9999999999999999999999999999999999988

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.60  E-value=1.7e-14  Score=131.57  Aligned_cols=207  Identities=22%  Similarity=0.255  Sum_probs=161.5

Q ss_pred             HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  166 (321)
                      +..++.+..|+.+++.+...++..+.-+||..++.++..||+++.      |.+++.+++.|++++...+..        
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~--------  235 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK--------  235 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc--------
Confidence            778888999999999999999999999999999999999999865      689999999999888643211        


Q ss_pred             CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCcc
Q 020833          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVVS-EPSDWK  242 (321)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~l~~~~-~~~~~~  242 (321)
                           |+++........|+++++++|+.||+|+++.|+...+.+   |......+..++..+++.|...+.+. ....++
T Consensus       236 -----~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~  310 (416)
T KOG2765|consen  236 -----QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE  310 (416)
T ss_pred             -----ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence                 111222334479999999999999999999998776542   32233344555666666655544322 112333


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          243 LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       243 ~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+.......++..++++|+++=++|.++.-..++..+.+=+.++.+.+++.+.++=|.++++..++|.+.
T Consensus       311 lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~  380 (416)
T KOG2765|consen  311 LPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIP  380 (416)
T ss_pred             CCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            4333334556778899999999999999999999999999999999999999999999999999999876

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.49  E-value=1.4e-13  Score=109.52  Aligned_cols=124  Identities=18%  Similarity=0.334  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 020833           22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS  100 (321)
Q Consensus        22 ~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~al~~~  100 (321)
                      ++||...++.|...++ .||....++|+..+++ ++++....++++....+.+++......+.++ ...+.++++|++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4699999999998765 9999999999999997 5555444444333455667777788888886 89999999999999


Q ss_pred             chhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus       101 ~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ++++++.+.++.|+++.++++++++||++++      +++|+++.+.|+.++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998765      5899999999987753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.43  E-value=1.2e-12  Score=102.45  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHHHHH
Q 020833           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQ   90 (321)
Q Consensus        12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~~~~   90 (321)
                      ...++.+++++.||...++.|..+| ++||..-+..|-.....++..+....++.+.+ ..+.|.|.+.++-|+.+..++
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence            3567889999999999999999986 59999999999999998888877665443322 245677888888998889999


Q ss_pred             HHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        91 ~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+||.|++...++..+=+-.+.|++++++++++++||++.++      |+|+.+-.+|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999998874      799999999987764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.34  E-value=5.2e-12  Score=100.39  Aligned_cols=116  Identities=21%  Similarity=0.315  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020833          193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS  272 (321)
Q Consensus       193 ~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~  272 (321)
                      ++||.+.+..|+..++. |+...+.+++..+++ ..+.....+...  ....+...+...++.+.+++.+++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            46899999999999986 588999999999987 666666554322  11112345677788899889999999999999


Q ss_pred             ccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          273 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       273 ~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +.++++++.+.+++|+++.+++++++||+++..+++|+++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l  116 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIIL  116 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999887

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.30  E-value=8.2e-10  Score=98.82  Aligned_cols=227  Identities=15%  Similarity=0.189  Sum_probs=158.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833           72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus        72 ~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      ++|+..+..+-+++..+.+.+.+.++++.+++.=.++.++-.++|++++.+++|+|++.+      ||+++.+-++|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            456677777888899889999999999999999999999999999999999999998765      58999999999988


Q ss_pred             hhhcCCCCCcCCCCCCCCCC-c-ccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Q 020833          152 VTFYKGPPLIGELSHSGSPR-R-LLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILST  228 (321)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~  228 (321)
                      +-..+...  .    +++++ . +.+....+...|.++.++++++-++..++.+|..|+.+ +.+.-+....+.|.++.+
T Consensus        87 v~~~~~~~--~----~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~  160 (244)
T PF04142_consen   87 VQLSSSQS--S----DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNL  160 (244)
T ss_pred             eecCCccc--c----ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence            64321110  0    00000 0 00112334578999999999999999999999988864 334455556666666665


Q ss_pred             HHHHHhccCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhh
Q 020833          229 AFALIVVSEP-SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRI  307 (321)
Q Consensus       229 ~~~l~~~~~~-~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~  307 (321)
                      +.....+.+. .+-.  ....+-...+.-++.+.++=.+....+|+.|...=+.-..+..+.+.+.+++++|.++|...+
T Consensus       161 ~~~~~~~~~~~~~~g--~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~  238 (244)
T PF04142_consen  161 LALLLSDGSAISESG--FFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFL  238 (244)
T ss_pred             HHHhcccccccccCC--chhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Confidence            5544332211 1100  001111112222333444434455677888888777788889999999999999999999999


Q ss_pred             HHHhh
Q 020833          308 LCSDV  312 (321)
Q Consensus       308 iG~~l  312 (321)
                      +|+++
T Consensus       239 lg~~~  243 (244)
T PF04142_consen  239 LGAAL  243 (244)
T ss_pred             hheec
Confidence            99764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.29  E-value=5e-11  Score=93.39  Aligned_cols=126  Identities=10%  Similarity=0.041  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 020833          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  264 (321)
Q Consensus       185 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~  264 (321)
                      ..+++++|+++++..+..|--.++. ||..-+....++..+.+.......+..... .......|..++..|+ .++.+.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSGl-a~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSGL-AGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHHH-HHHHHH
Confidence            5688999999999999988777876 576777888888877777776665432111 1123456888888896 889999


Q ss_pred             HHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          265 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       265 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      .+|++++|+-+++++.++.-+.|+++++++++++||++|..+++|+.++
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI  130 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLI  130 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999985

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.26  E-value=7.6e-11  Score=108.25  Aligned_cols=256  Identities=15%  Similarity=0.138  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 020833           25 VSNMEVIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSP  102 (321)
Q Consensus        25 g~~~~~~K~~~~--~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a  102 (321)
                      .......|..++  +---|..+...+...+.+.+........++..+..+...+...+.+|++.++..++-..++.+.+.
T Consensus        30 v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~V  109 (316)
T KOG1441|consen   30 VGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPV  109 (316)
T ss_pred             eeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccch
Confidence            334455677776  323477788888777777666543332222111123345667788899988889999999999999


Q ss_pred             hhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhh
Q 020833          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (321)
Q Consensus       103 ~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (321)
                      +..-.+-+++|.++.+++.++.+|+.+++.      ++.++.-..|+.+-..   .|                 .+ ...
T Consensus       110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~---~e-----------------~~-fn~  162 (316)
T KOG1441|consen  110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV---TE-----------------LS-FNL  162 (316)
T ss_pred             hHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee---cc-----------------cc-ccH
Confidence            999999999999999999999999998765      4667777777766431   11                 11 237


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--hhh-hHHHHHHHHHHHHHHHHH-HHHHHhccCCC------CccccchhHHHHH
Q 020833          183 LGGFFLAAEAFMNSAWFILQALILR--KFA-AVLIIMFYLFFFNTILST-AFALIVVSEPS------DWKLGLDIGLVAV  252 (321)
Q Consensus       183 ~G~~l~l~aa~~~a~~~vl~~~~~~--~~~-~~~~~~~~~~l~~~i~~~-~~~l~~~~~~~------~~~~~~~~~~~~l  252 (321)
                      .|.+.++.+.+..+..+++.++..+  +.. |++....++.-++.+.++ |.....|+...      .|+.    ....+
T Consensus       163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~----~~~~~  238 (316)
T KOG1441|consen  163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV----TFLIL  238 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch----hhHHH
Confidence            8999999999999999999999884  222 678888888888888888 66555444221      2221    22223


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       253 ~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ++.. ++...-....++.+.+.+|.+-++.+.+--++.+..|+++++|++|+.+..|..+
T Consensus       239 ~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~i  297 (316)
T KOG1441|consen  239 LLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAI  297 (316)
T ss_pred             HHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHH
Confidence            3333 2223333445778899999999999999999999999999999999999999988

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.18  E-value=7.2e-10  Score=99.80  Aligned_cols=132  Identities=12%  Similarity=0.111  Sum_probs=108.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g   86 (321)
                      .+.++....+++++.|+......|...+ +.+|  .....+|+.++.+++.+.....+++  ...+.+++......++++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            4567899999999999999999999865 3664  4555578999999888876543322  223556666677788887


Q ss_pred             -HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchh
Q 020833           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (321)
Q Consensus        87 -~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv  149 (321)
                       ...+.++++++++.+++.++.+.++.|++++++++++++||++.+      +++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             788999999999999999999999999999999999999998765      589999988885

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.10  E-value=2.7e-10  Score=89.93  Aligned_cols=101  Identities=22%  Similarity=0.349  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHH
Q 020833           46 VYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII  122 (321)
Q Consensus        46 ~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l  122 (321)
                      .+|+..+.+++..+...++|.+.  +..+.|++...+..|+++ ..++.++++|+++.+ +.++.+.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            58999999988887665332211  122334455666778888 589999999999999 58889999999999999999


Q ss_pred             HhhccccccccccchhhhhHHHhhchhhhhh
Q 020833          123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus       123 ~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ++|||++.+      ++.+++++++|++++.
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIA  105 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHh
Confidence            999999765      5899999999999886

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.08  E-value=3.4e-07  Score=84.11  Aligned_cols=280  Identities=13%  Similarity=0.122  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhh---cCC-CCC------CHHHHHH
Q 020833           12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHR---SER-PQL------TFSILCS   78 (321)
Q Consensus        12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~---~~~-~~~------~~~~~~~   78 (321)
                      .-++.++....-++...+..|.+-..+   ..|...++.-=.+-.++.....+...|   ++. ..+      .+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            556778888889999999999975444   556666655544444443333332211   111 111      2233444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCC
Q 020833           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (321)
Q Consensus        79 ~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  158 (321)
                      ..+-+++.++.+-+.+.++.+.+++.-.+..++--+-|+++..+++++|++++      ||.++++-++|+.++-...++
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence            55566777788889999999999999999999999999999999999998765      589999999999887421111


Q ss_pred             CCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020833          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE  237 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~  237 (321)
                      .   -       ++..+....+...|....+.+++.-++-.++.+|..|+.. +.+.-+.-...+|.+..+...+..+..
T Consensus       169 ~---~-------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~  238 (345)
T KOG2234|consen  169 P---T-------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGE  238 (345)
T ss_pred             C---C-------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            0   0       0111222345589999999999999999999999998754 233334334445655555544444332


Q ss_pred             CCCcc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          238 PSDWK----LGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       238 ~~~~~----~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ...|.    .-+...|..++..+     ++=.+-..-+|+.|-..=+....+..+++.+.++.++|-++|+...+|..+
T Consensus       239 ~i~~~gff~G~s~~vw~vVl~~a-----~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~l  312 (345)
T KOG2234|consen  239 AINEYGFFYGYSSIVWLVVLLNA-----VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALL  312 (345)
T ss_pred             ccccCCccccccHHHHHHHHHHh-----ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            21121    11112243333333     333344455677776665666677889999999999999999999999887

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=9.1e-08  Score=86.69  Aligned_cols=273  Identities=15%  Similarity=0.168  Sum_probs=193.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYV-IIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~-~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g   86 (321)
                      +..++....+.-.+.-..+.+.-|.++.. +.|... +..++.+..++.+...-.. +=-+.++.+++..+.++...++-
T Consensus         9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf   87 (314)
T KOG1444|consen    9 KQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF   87 (314)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH
Confidence            34455666666666777778888988766 333322 3347777766665544221 11123457788888888888888


Q ss_pred             HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  166 (321)
                      ....+.-..+++|.+...-.++-...|+++++....+++.|.+++      -+.++...++|......   ++.      
T Consensus        88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~---~d~------  152 (314)
T KOG1444|consen   88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAF---TDL------  152 (314)
T ss_pred             HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcc---ccc------
Confidence            777778889999999999999999999999998888877555444      46788888788755431   111      


Q ss_pred             CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccCC------C
Q 020833          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP------S  239 (321)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~~------~  239 (321)
                                 .. ...|..+.+...++-+.+.+..|+..+..+ +...+++|..+.....+.+...++++..      +
T Consensus       153 -----------sf-~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~  220 (314)
T KOG1444|consen  153 -----------SF-NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFD  220 (314)
T ss_pred             -----------ee-cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcc
Confidence                       11 134889999999999999999888665532 3355678888999888888887775411      1


Q ss_pred             CccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          240 DWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       240 ~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +|.  ....+..+...|+++-++.|. -.++.+..++++.+.+....-....+-+.+..|++.++..++|..+
T Consensus       221 ~~~--~~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~  290 (314)
T KOG1444|consen  221 NWS--DSSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLV  290 (314)
T ss_pred             ccc--chhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHH
Confidence            121  122366777778766655554 4578888899888888876777788888888899999999999888

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.89  E-value=2.1e-09  Score=93.96  Aligned_cols=263  Identities=17%  Similarity=0.185  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020833           17 MVIVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFV   95 (321)
Q Consensus        17 l~~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~   95 (321)
                      .+++..+=+.++.-+-++ +.+++ |..-.|+-..+-+++-.+...+ +|+ ..+.+   |..++++++...-.+++...
T Consensus        24 QiLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~f-R~~-~~~~~---~~hYilla~~DVEaNy~vV~   97 (336)
T KOG2766|consen   24 QILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLF-RRK-YIKAK---WRHYILLAFVDVEANYFVVK   97 (336)
T ss_pred             HHHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHh-hhH-HHHHH---HHHhhheeEEeecccEEEee
Confidence            344444445555555554 34443 5556666666666676776654 332 11222   44478888888555667888


Q ss_pred             hhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccC
Q 020833           96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLL  175 (321)
Q Consensus        96 al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~  175 (321)
                      |.||++.+...++-.-.-..+.+++|+++|.|-.+      .|+.|+++|+.|++++++.+   ..     .+     +.
T Consensus        98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrl------mki~gV~iCi~GvvmvV~sD---V~-----ag-----d~  158 (336)
T KOG2766|consen   98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRL------MKISGVVICIVGVVMVVFSD---VH-----AG-----DR  158 (336)
T ss_pred             ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhh------heeeeEEeEecceEEEEEee---ec-----cc-----cc
Confidence            99999999888886644445567899998888644      46899999999999987531   11     10     12


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccccchhHHHHHHH
Q 020833          176 SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLY  254 (321)
Q Consensus       176 ~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~  254 (321)
                      .++.+-..|+.+.+++|-+||+.++....+.|+. |....+....++|+++..+- +.++.. ..  +..+++..  ..|
T Consensus       159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~--tl~w~~~i--~~y  232 (336)
T KOG2766|consen  159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVS--TLHWDSAI--FLY  232 (336)
T ss_pred             cCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-Hhhhcccee--eEeehHHH--HHH
Confidence            3345557899999999999999999999888987 56777788888999988877 444432 22  12222222  223


Q ss_pred             HH-HHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          255 SA-VIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       255 ~g-~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      ++ ..+...-|.+.-..+|..+++...+-....-.++.++  ..+|-+.+|.-.+..+.
T Consensus       233 l~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~  289 (336)
T KOG2766|consen  233 LRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFAT  289 (336)
T ss_pred             HHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHH
Confidence            33 2233334555566678888888887777888888888  77777899888777665

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.88  E-value=5.2e-08  Score=84.35  Aligned_cols=213  Identities=15%  Similarity=0.135  Sum_probs=156.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCC
Q 020833           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (321)
Q Consensus        79 ~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  158 (321)
                      +..++.-.-..++.-+.|++|.|=-...+=-+.-|+=+++++.++.+++-.|+      +...++...+|+.+.. .++.
T Consensus        88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~  160 (337)
T KOG1580|consen   88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKEN  160 (337)
T ss_pred             HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-cccc
Confidence            34444444566778888999998766555566778888889999887777654      5889999999998876 4432


Q ss_pred             CCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccC
Q 020833          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE  237 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~  237 (321)
                      ...             ...+.++..|+++.++|--.=......+.+..+.+. ....++++..+.+++.+..-.++++..
T Consensus       161 Kv~-------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGEl  227 (337)
T KOG1580|consen  161 KVG-------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGEL  227 (337)
T ss_pred             ccC-------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhH
Confidence            211             112344578999999999888888889998877753 234567777777777766655555321


Q ss_pred             --CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          238 --PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       238 --~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                        ...+...-+..|.-+..+++ ++++++.+........||-+-|.+....-.|+++.++++++++++.+|++|.++
T Consensus       228 weF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvl  303 (337)
T KOG1580|consen  228 WEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVL  303 (337)
T ss_pred             HHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence              00011000122444555666 789999999999999999999999999999999999999999999999999988

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.83  E-value=9.7e-08  Score=87.86  Aligned_cols=136  Identities=15%  Similarity=0.028  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~   88 (321)
                      +..+.+..+.+++.|+......|.. .. -++.....+++.++++++.++............+.+.+......++++ ..
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999985 33 345667788999998888776543222111112456677777788887 78


Q ss_pred             HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+.+|++++++.++++++.+.++.|++++++++++++|+++..      +++|..+.+.|+.++.
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999998764      6899999999997764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.80  E-value=1.5e-06  Score=78.23  Aligned_cols=281  Identities=19%  Similarity=0.208  Sum_probs=167.3

Q ss_pred             chhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCCHHH-HH
Q 020833            4 DMGSMRAALPSVGMVIVLL--AQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE---RPQLTFSI-LC   77 (321)
Q Consensus         4 ~~~~~~~~~~~l~l~~~~~--~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~---~~~~~~~~-~~   77 (321)
                      |.++..+....+++++.--  --|..+...+.-.+-+. |...+.+..+.=.++-...-..++++.   +-..+|++ ++
T Consensus         7 ~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~f-PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr   85 (349)
T KOG1443|consen    7 DNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHF-PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLR   85 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCC-chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHH
Confidence            5555555555555554322  23556666666433333 555555554443333222222222221   12355665 44


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhh--chhhhhhhc
Q 020833           78 SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASI--GGAFVVTFY  155 (321)
Q Consensus        78 ~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~--~Gv~ll~~~  155 (321)
                      +...+|+..+..-.+-+++++|++.+.=+..-.+.++|+.+++.++.-||+++.        +...+.+  +|+.+.+ .
T Consensus        86 ~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~--------L~l~v~lI~~Glflft-~  156 (349)
T KOG1443|consen   86 RLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA--------LVLIVLLIAVGLFLFT-Y  156 (349)
T ss_pred             HhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHhhheeEEE-e
Confidence            566778877777778889999999988777778999999999999999998763        3444444  4444433 2


Q ss_pred             CCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHH
Q 020833          156 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFA  231 (321)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~  231 (321)
                      |.                   .+. ...|..+.+.|+++-++-=...++..++.+    +|.+......-...+.+++..
T Consensus       157 Ks-------------------Tqf-~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~  216 (349)
T KOG1443|consen  157 KS-------------------TQF-NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLS  216 (349)
T ss_pred             cc-------------------cce-eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHH
Confidence            22                   112 245666666665554444444444444432    556555554444555566666


Q ss_pred             HHhccCC-C----Cccc-cchhHHHHHHHHHHHHHHHHHHHH---HHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCcc
Q 020833          232 LIVVSEP-S----DWKL-GLDIGLVAVLYSAVIGTGFRVGLC---TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAF  302 (321)
Q Consensus       232 l~~~~~~-~----~~~~-~~~~~~~~l~~~g~~~t~~~~~l~---~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~  302 (321)
                      +.+|+.. .    .|.. .....+..+.++++ ++..++.+-   .....+.+..+.|...-.--+-..++|..+.+|++
T Consensus       217 l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~l  295 (349)
T KOG1443|consen  217 LLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQL  295 (349)
T ss_pred             HHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcch
Confidence            6676632 1    1211 11112333444444 445555442   33457778888888888888999999999999999


Q ss_pred             chhhhHHHhhhcc
Q 020833          303 CLGRILCSDVGKV  315 (321)
Q Consensus       303 t~~~~iG~~l~~~  315 (321)
                      +...++|..+..+
T Consensus       296 s~lN~~Gl~i~~a  308 (349)
T KOG1443|consen  296 SLLNWLGLAICLA  308 (349)
T ss_pred             hhhHHHHHHHHHH
Confidence            9999999988444

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.78  E-value=1.1e-07  Score=87.69  Aligned_cols=128  Identities=14%  Similarity=0.065  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--cccchhHHHHHHHHHHH
Q 020833          181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDW--KLGLDIGLVAVLYSAVI  258 (321)
Q Consensus       181 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~g~~  258 (321)
                      ...|.++.+++++.|+...+..|.. .+. +|..+.++++.++.+.+.+......+.. +.  .......+. ....+.+
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~   81 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQWS-YLKTLIQTPQKIF-MLAVSAV   81 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHcCHHHHH-HHHHHHH
Confidence            3679999999999999999998754 555 5889999999999887766554332111 00  000112222 2335566


Q ss_pred             HHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          259 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       259 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +....+.++++++++.++..++...++.|++..++++++++|+++..+++|.++
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l  135 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVIL  135 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            777889999999999999999999999999999999999999999999999887

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.78  E-value=1.4e-07  Score=86.28  Aligned_cols=123  Identities=10%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 020833          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  264 (321)
Q Consensus       185 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~  264 (321)
                      ..+.+.++++||...+..|+..++. ++.  ..+....+.++..++...... ...|+......|. ....+..+....+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE-PDF--LWWALLAHSVLLTPYGLWYLA-QVGWSRLPATFWL-LLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch-hHH--HHHHHHHHHHHHHHHHHHhcc-cCCCCCcchhhHH-HHHHHHHHHHHHH
Confidence            3577999999999999999877763 333  355556666666665543211 1123322222233 3334444777888


Q ss_pred             HHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          265 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       265 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .++++++++.++..++++.+..|+++.+++++++||+++..+++|.++
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~  125 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILI  125 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.76  E-value=2.3e-07  Score=85.45  Aligned_cols=134  Identities=13%  Similarity=0.055  Sum_probs=104.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~   88 (321)
                      ...+.+..+.+++.|+...+..|...+ +.+|...... ..++++++.++......  ....+...+...+..|+++ .+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            356889999999999999999999754 5788776544 45566666666543221  1123344454456788887 78


Q ss_pred             HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+.++++++++.+++.++.+.++.|+++.++++++++|+++..      +++|..+.+.|+....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999998764      6899999999987765

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.75  E-value=2.7e-07  Score=76.25  Aligned_cols=128  Identities=15%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHHhccCC-CCcc--cc------chhH
Q 020833          184 GGFFLAAEAFMNSAWFILQALILRK------FAAVLIIMFYLFFFNTILSTAFALIVVSEP-SDWK--LG------LDIG  248 (321)
Q Consensus       184 G~~l~l~aa~~~a~~~vl~~~~~~~------~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~-~~~~--~~------~~~~  248 (321)
                      |.++.+.|.++.|++.++.|+..++      ..++..+..+....+.+.+.+.+++.|... ....  ..      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5678999999999999999998766      237888889999999999999988876532 1110  10      1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +..++..|+ ..........+.+++.+|...+....+-.+...+.|++++||++|..+++|.++
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l  143 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVL  143 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHH
Confidence            444444555 334555566788999999999999999999999999999999999999999987

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00688 rarD rarD protein

Probab=98.71  E-value=2.1e-07  Score=83.79  Aligned_cols=127  Identities=12%  Similarity=0.116  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC---CCcccc-chhHHHHHHHHHHH
Q 020833          183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSAVI  258 (321)
Q Consensus       183 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~---~~~~~~-~~~~~~~l~~~g~~  258 (321)
                      .|..+.++++++|+...+..|. ..+. +|.++.++.++++.+.+.+......+..   ..++.. ....+......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3788999999999999999887 4455 6899999999999887766554432100   011111 11123334455553


Q ss_pred             HHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          259 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       259 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                       ....+.++++++++.++..++.+.++.|++..+++++++||+++..+++|.++
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~  132 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVII  132 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence             66788999999999999999999999999999999999999999999999876

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.70  E-value=2.6e-06  Score=76.69  Aligned_cols=248  Identities=14%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhh--hhhHHHHH
Q 020833           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML--NLIPAFTF  117 (321)
Q Consensus        40 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~--~~~Pv~~~  117 (321)
                      +|..+.+..-+.+.+.=...  +..+++. ....+.|..+...++.......+-+.|++|++=-.-.+--  -+.|+  +
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~--l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV--m  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAM--LKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV--M  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHH--Hhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH--H
Confidence            35667777766665544332  2223322 2233345566777888888888999999998533222221  36675  5


Q ss_pred             HHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHH
Q 020833          118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA  197 (321)
Q Consensus       118 ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~  197 (321)
                      ++..++.+.|.+.+      +.+...+--.|+.+....+..+ +.           +.....+...|..++...-.+=++
T Consensus       125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~-----------~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS-----------SKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc-----------cccCCCCchHhHHHHHHHHHHHhh
Confidence            66778877777654      4566666668887665432111 00           012223457899998888888888


Q ss_pred             HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccC--CCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020833          198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE--PSDW-KLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR  273 (321)
Q Consensus       198 ~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~--~~~~-~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~  273 (321)
                      .+..|+++.+++. ++..++++..+++++......+..+..  +-++ +..+ +.+.-++..+. ++.+++.+.++-+++
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp-~~~~Di~l~s~-~gavGQ~FI~~TI~~  264 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHP-DVAFDILLYST-CGAVGQLFIFYTIER  264 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcCh-hHHHHHHHHHH-hhhhhhheehhhHhh
Confidence            8889999888754 667888888888887766553222211  1111 1122 22344555566 567888888899999


Q ss_pred             cCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          274 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       274 ~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .|+-.-..++...=.+++.++.+.+|.+++..|++|..+
T Consensus       265 FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~i  303 (327)
T KOG1581|consen  265 FGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLI  303 (327)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeee
Confidence            999999999999999999999999999999999998776

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.66  E-value=5.2e-07  Score=83.13  Aligned_cols=132  Identities=16%  Similarity=0.118  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 020833           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (321)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~   90 (321)
                      ..+.++.+.++++|+...+..|... .+.+|.....   ..+.+.+.+..... .......+.+.+......++...+.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLS-PQPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHh-cCccccCCHHHHHHHHHHHHHHHHHH
Confidence            4588999999999999999999964 4577765432   33334443332222 21111244556666666665447789


Q ss_pred             HHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        91 ~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+|++++++.+++.++.+.++.|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999998764      6899999999987754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.63  E-value=1.1e-06  Score=83.11  Aligned_cols=135  Identities=10%  Similarity=0.128  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHHH
Q 020833           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFG   86 (321)
Q Consensus        12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p-~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~g   86 (321)
                      .+...++.+++.|+...+..|...+. .+| ....++...++.+.+.+......+...    ...+.. ....+..++..
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t  266 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHH
Confidence            36678889999999999999987654 655 466777777776665544443222111    111112 11222334434


Q ss_pred             HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~  154 (321)
                      .+.+.+|++++++.+++.++...++.|++++++++++++|+++..      +++|.++.+.|+.+...
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999999999999999765      58999999999988764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.50  E-value=7.2e-07  Score=82.37  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=102.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CHHHHHH-
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL---------TFSILCS-   78 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~---------~~~~~~~-   78 (321)
                      +..+.+..+++++.|+...+..|...+. +.||..+..+-...+.+++.|+............         ....... 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            4568899999999999999999997541 5899999999999999988888654321110000         0001111 


Q ss_pred             HHHHHHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        79 ~~~~g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+..+... ...+.+++.+++++++..+++.....|++++++++++++|+++.+      +++|.++.+.|+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence            11222222 334467778999999999999999999999999999999999875      5899999999997765

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.46  E-value=5.6e-06  Score=68.29  Aligned_cols=133  Identities=17%  Similarity=0.249  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----C-------CHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ----L-------TFSI   75 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~----~-------~~~~   75 (321)
                      +++..+.+.+..+...+..|..++.      +.+|.++..+-...+.+++.+......+.+..+    .       ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            3567888899999999999998777      689999999999999999998877654332100    0       1133


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833           76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus        76 ~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      +...+..|++++..+.+.+..++++++...+++...-.+.+.++++++++|+++.+      +++|+.++++|.++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            44455567777888999999999999999999999999999999999999998765      58999999999865

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.46  E-value=6.5e-06  Score=75.98  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCCHHHHHHHHHH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLL   82 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~   82 (321)
                      +..+.+..+.+++.|+...+..|...+.+-+  .....++-...+.+.+........+..     ....+.+.+...+..
T Consensus       141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        141 AMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            3468899999999999999999986433212  223334444444333332222221111     112345667777778


Q ss_pred             HHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        83 g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      |+++ ...+.++++++++.++++++.+..+.|++..++++++++|+++..      +++|..+.++|+.+..
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            8888 788899999999999999999999999999999999999998764      5899999999987654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.45  E-value=1.7e-05  Score=70.73  Aligned_cols=212  Identities=14%  Similarity=0.102  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCc
Q 020833           82 LSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI  161 (321)
Q Consensus        82 ~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~  161 (321)
                      -+++......+.+.|+.+++++.=.-+-...-+|+.+++.-+++.+++.+      ||+|+....+|++++...   ++.
T Consensus        92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~---d~~  162 (372)
T KOG3912|consen   92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL---DVH  162 (372)
T ss_pred             hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee---ecc
Confidence            45666666778889999999987777777888999999999988888655      589999999998887532   111


Q ss_pred             CCCCCCCCCCcccCCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 020833          162 GELSHSGSPRRLLLSP--QLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVS--  236 (321)
Q Consensus       162 ~~~~~~~~~~~~~~~~--~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~--  236 (321)
                      ..          ..+.  -.+...|+++.+.+=+.-|...++-+|..+++. +|.....|+.++|.+.+..++.....  
T Consensus       163 ~~----------~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~  232 (372)
T KOG3912|consen  163 LV----------TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIP  232 (372)
T ss_pred             cc----------cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhhee
Confidence            00          0111  134478999999999999999999888777754 78899999999997766665543311  


Q ss_pred             ---CCCCccccchhHHHH---------HHHHHHHHHHHHHHHHHH----HhcccCcchhhhhhhhHHHHHHHHHHHHhcC
Q 020833          237 ---EPSDWKLGLDIGLVA---------VLYSAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGD  300 (321)
Q Consensus       237 ---~~~~~~~~~~~~~~~---------l~~~g~~~t~~~~~l~~~----~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E  300 (321)
                         +.+.-+-....+|.-         .++..+.+..++..+++.    -.|..++++=.+...+...+-=+++.....|
T Consensus       233 ~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E  312 (372)
T KOG3912|consen  233 SGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE  312 (372)
T ss_pred             cCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence               111000000111221         234445455555555433    3577888888899999888888889999999


Q ss_pred             ccchhhhHHHhh
Q 020833          301 AFCLGRILCSDV  312 (321)
Q Consensus       301 ~~t~~~~iG~~l  312 (321)
                      .++..|+.|.++
T Consensus       313 ~f~llqilGFli  324 (372)
T KOG3912|consen  313 YFHLLQILGFLI  324 (372)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.36  E-value=0.00013  Score=65.79  Aligned_cols=210  Identities=12%  Similarity=0.046  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833           74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (321)
Q Consensus        74 ~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll  152 (321)
                      +.+...++.|++=.+.+...+.+.++.+.+++.=+.. +.-+.+.+.+.++++|--+.+++.  .-..++++-++|+.+-
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~lt  120 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVILT  120 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHHh
Confidence            6666667777777888999999999999888665553 455667888999999987665431  2344667777887664


Q ss_pred             hhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 020833          153 TFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFAL  232 (321)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l  232 (321)
                      .. ++++.           . ..+...+...|....+++.+.|-.|.+..|.  .+. |++...+-|.+--.+...++..
T Consensus       121 s~-~~~~~-----------~-~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i~~~  184 (269)
T PF06800_consen  121 SY-QDKKS-----------D-KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFIFNL  184 (269)
T ss_pred             cc-ccccc-----------c-ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHHHhh
Confidence            32 11110           0 0112334567999999999999999998654  222 4666555444322222233333


Q ss_pred             HhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhH
Q 020833          233 IVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRIL  308 (321)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~i  308 (321)
                      +.+...  ++   ...|..+ ..|+ .=.++-.++..+.++.|.+..=.++-+.++.+.+.|.++++|+=+..++.
T Consensus       185 ~~~~~~--~~---k~~~~ni-l~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~  253 (269)
T PF06800_consen  185 FSKKPF--FE---KKSWKNI-LTGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMI  253 (269)
T ss_pred             cccccc--cc---cchHHhh-HHHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHH
Confidence            222111  11   1123322 2233 23456667888999999999999999999999999999999987766554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.28  E-value=1.9e-05  Score=63.69  Aligned_cols=108  Identities=12%  Similarity=0.092  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHH
Q 020833          184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  263 (321)
Q Consensus       184 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~  263 (321)
                      |.++.+.+.++-+...++-|+-.++.++ ...... .    . ...... .  +           ....++.|+++.+.+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~-~--~-----------p~~~i~lgl~~~~la   61 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF-G--L-----------ALRAVLLGLAGYALS   61 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH-h--c-----------cHHHHHHHHHHHHHH
Confidence            5678888888889999888877766542 111111 0    0 000000 0  0           012467889999999


Q ss_pred             HHHHHHHhcccCcchhhhhhhhHHHHHHHHHHH--HhcCccchhhhHHHhh
Q 020833          264 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV--IVGDAFCLGRILCSDV  312 (321)
Q Consensus       264 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~--il~E~~t~~~~iG~~l  312 (321)
                      +.+|.+++++.+.+.+.++....++...+.++.  ++||++|+.+++|.++
T Consensus        62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~l  112 (129)
T PRK02971         62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVAC  112 (129)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            999999999999999999999999989888885  8999999999999988

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.26  E-value=1.4e-05  Score=73.55  Aligned_cols=134  Identities=14%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA---LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g   86 (321)
                      ..|+.+..+++.+.++......|..   +.||....+....   +++.++.+..   ++. ++. +.+.....++.|++-
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~-~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPL-KKYAILLNILPGLMW  221 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---hcc-cch-HHHHHHHHHHHHHHH
Confidence            4789999999999999999999974   3788888555544   3333333221   111 222 222333444577776


Q ss_pred             HHHHHHHHHhhc-ccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        87 ~~~~~~~~~al~-~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ...+.+|+.+.+ +.+++.++.+.+..|+...+.+++++||+.+.++.  +.-++|.++-+.|+.++.
T Consensus       222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            777889999999 99999999999999999999999999999987752  112378888888887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.24  E-value=4e-05  Score=72.39  Aligned_cols=138  Identities=16%  Similarity=0.103  Sum_probs=99.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhcCC-----------CCCC
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-----------PQLT   72 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-----------~~~~   72 (321)
                      +..+.+..+++.+.|+...+.+|..++.      +.++.....+-..+++++++|+.......+.           ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4669999999999999999999997653      2567667666678888888887653211100           0001


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833           73 FSILCSFFL-LSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus        73 ~~~~~~~~~-~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      +......+. .++..+..+.+.|++++++++..+++..++-|++++++++++++|+++..      +++|..+.+.|+.+
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            111111112 22233555555667999999999999999999999999999999998765      58999999999876


Q ss_pred             hh
Q 020833          152 VT  153 (321)
Q Consensus       152 l~  153 (321)
                      ..
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            43

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.23  E-value=7.8e-06  Score=64.17  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             HHHHHH-HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        81 ~~g~~g-~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ..++++ ..++.++..+++..|.+.+-.+.++.|+++.++++++++||++.+      |++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            344455 778899999999999999999999999999999999999999876      5899999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.17  E-value=6.4e-05  Score=68.04  Aligned_cols=133  Identities=14%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~   87 (321)
                      ...+.+..+.+.+.|+...+..|...  +.++..... +.+........+...  .... .....+++......|+++ .
T Consensus       152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFL--SGFG-APILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHh--cccc-ccCCHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999864  466766666 444422222222211  1111 234566777788888888 5


Q ss_pred             HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ..+.++++++++.+++..+.+..+.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999998765      5899988888887754

>TIGR00803 nst UDP-galactose transporter

Probab=98.17  E-value=2.1e-05  Score=69.37  Aligned_cols=194  Identities=10%  Similarity=-0.019  Sum_probs=109.1

Q ss_pred             hhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcC-----------CCCCcCCCCCCCCCCccc
Q 020833          106 TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK-----------GPPLIGELSHSGSPRRLL  174 (321)
Q Consensus       106 ~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~-----------~~~~~~~~~~~~~~~~~~  174 (321)
                      ....+..|+++++..+...+||.+ +     .|++++.+...|++.-...+           +.....     .+++.+.
T Consensus         8 ~~~~s~~l~~v~l~~~~~~~~~~~-~-----~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~-----~~~~~~~   76 (222)
T TIGR00803         8 IIFKQNNLVLIALGNLLAAGKQVT-Q-----LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQ-----MVQSSAK   76 (222)
T ss_pred             HHHHhcchHHHHHhcccccceeee-h-----HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeee-----cCCCCcc
Confidence            344456677777777777777765 2     35777777777765321100           000000     0000000


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHhccCC-CCccccchhHHHHH
Q 020833          175 LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVL-IIMFYLFFFNTILSTAFALIVVSEP-SDWKLGLDIGLVAV  252 (321)
Q Consensus       175 ~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~l  252 (321)
                      .....+...|....+.++++-+...+.+++..|+.+... .-+....+++.+.........+.+. .++....  .+...
T Consensus        77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (222)
T TIGR00803        77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFI--GYPTA  154 (222)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCccc--CCchH
Confidence            011124567888888888888888888888766542111 1111111222221111111111111 1111000  00011


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          253 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       253 ~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+.-++....+..+..+.+|+.+++..+....++++++.+++++++||+++..+++|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~l  214 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAIL  214 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            111223556677778889999999999999999999999999999999999999999987

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.16  E-value=2.3e-05  Score=67.66  Aligned_cols=245  Identities=14%  Similarity=0.145  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHH
Q 020833           42 YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI  121 (321)
Q Consensus        42 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~  121 (321)
                      +.+.+.+.+....-++.+-+.+--+-    +.++.+.++...++-..-.+.--.+++|.+...=++.-++.-+.++....
T Consensus        38 flll~vQSlvcvv~l~iLk~l~~~~f----R~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEv  113 (309)
T COG5070          38 FLLLAVQSLVCVVGLLILKFLRLVEF----RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEV  113 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhe----ehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHH
Confidence            55677777766655555422211111    12223334444444423233445688999988888888888777777777


Q ss_pred             HHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 020833          122 IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFIL  201 (321)
Q Consensus       122 l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl  201 (321)
                      .+++.|++.      ......++-+.--+.-. + ++.            |.........+.|-+++..-+++-|.+.+.
T Consensus       114 l~Fgg~vts------l~l~SFilMvlSS~va~-w-~D~------------q~~~~~~~~lN~GY~Wm~~NclssaafVL~  173 (309)
T COG5070         114 LFFGGRVTS------LELLSFILMVLSSVVAT-W-GDQ------------QASAFKAQILNPGYLWMFTNCLSSAAFVLI  173 (309)
T ss_pred             HHhcCccch------hhHHHHHHHHHHHHHhc-c-chh------------hHHHHHhcccCCceEEEehhhHhHHHHHHH
Confidence            777777653      23333333333221111 1 110            001111123356888888999999998887


Q ss_pred             HHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 020833          202 QALILRK--FAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKL-GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPL  277 (321)
Q Consensus       202 ~~~~~~~--~~~~~~~~~~~~l~~~i~~~~~~l~~~~-~~~~~~~-~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~  277 (321)
                      -|+..|-  ..| ..-++|..+.+..++..+.+++|+ ++.+... -+.....+++..|+ +++.--++-.|+.+-.+.+
T Consensus       174 mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSST  251 (309)
T COG5070         174 MRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSST  251 (309)
T ss_pred             HHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhh
Confidence            6664432  222 345689999999999998888875 2221111 11234567777787 5555556778999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          278 YVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       278 ~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +-|++.-+.-.-..+-|.+++||+.+-..+....+
T Consensus       252 tySMvGALNKlp~alaGlvffdap~nf~si~sill  286 (309)
T COG5070         252 TYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILL  286 (309)
T ss_pred             HHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHH
Confidence            99999999999999999999999999888777666

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.09  E-value=1.8e-05  Score=62.22  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          249 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       249 ~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +...+..|+++...++.++.++.++.++ .++....+.|+++.++++++++|+++..+++|..+
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l   96 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILL   96 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4445566776767889999999999995 88899999999999999999999999999999877

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.06  E-value=0.0035  Score=58.73  Aligned_cols=287  Identities=11%  Similarity=0.018  Sum_probs=156.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH-HHHHhhhcC---CCCCCHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLF-CSFLFHRSE---RPQLTFSILCSFFLLSV   84 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~   84 (321)
                      +...+++..+++.++||+.+.-.|..-+.+.+.++.+.-  .++.++... .....-|.-   ....+.+.+...++.|+
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~g--i~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGG--IFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            356689999999999999999999843223334433111  122221110 011101110   01234455556666677


Q ss_pred             HHHHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccc---cccccccchhhhhHHHhhchhhhhhhc---CC
Q 020833           85 FGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFY---KG  157 (321)
Q Consensus        85 ~g~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~---~~  157 (321)
                      +=...++.++.++++...+.+.-+. .+.-+...++..++++|=-   +.++.  ..-.+|+++.++|+.+...-   ++
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g--~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGG--RMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchH--HHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            6678889999999999998877665 4777778888888877533   33321  22467899999999886531   11


Q ss_pred             CCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHH---HHHHHH
Q 020833          158 PPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF-------ILQALILRKFAAVLIIMFYLFF---FNTILS  227 (321)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-------vl~~~~~~~~~~~~~~~~~~~l---~~~i~~  227 (321)
                      .+.           .+++..+.+...|+..++++.+.+++|+       ...+...+...++.....-+..   .|.++.
T Consensus       160 ~~~-----------~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~  228 (345)
T PRK13499        160 RKM-----------GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT  228 (345)
T ss_pred             ccc-----------ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence            100           0000233566899999999999999999       5443321111133333333332   444433


Q ss_pred             HH-HHHH---hccCCCCc-cccc-----hhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhh----hhhhhHHHHHHHH
Q 020833          228 TA-FALI---VVSEPSDW-KLGL-----DIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVS----MFKPLAIVFSIVM  293 (321)
Q Consensus       228 ~~-~~l~---~~~~~~~~-~~~~-----~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s----~~~~l~Pv~a~i~  293 (321)
                      -. ++..   ..+..+.. +...     ..+...-+..|+ .=.+++.+|..+-++.+.....    +.+.+..+++.++
T Consensus       229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistlw  307 (345)
T PRK13499        229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLW  307 (345)
T ss_pred             HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHh
Confidence            32 2221   11111101 1111     111111122222 3345566777777777554332    2235566999999


Q ss_pred             HHHHhcCccc------hhhhHHHhh
Q 020833          294 DVVIVGDAFC------LGRILCSDV  312 (321)
Q Consensus       294 ~~~il~E~~t------~~~~iG~~l  312 (321)
                      |. +++|.=+      ...++|.++
T Consensus       308 Gi-~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        308 GL-VLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             hh-hhhhccCCCccchhHHHHHHHH
Confidence            99 5999755      444555554

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=2.6e-05  Score=69.34  Aligned_cols=247  Identities=14%  Similarity=0.041  Sum_probs=139.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhc----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhH
Q 020833           40 NKYVIIVYSDALSSLFFLFCSFLFHRS----ERPQ--LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP  113 (321)
Q Consensus        40 ~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~--~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~P  113 (321)
                      .|.....++.+....+-..+-....+.    ..++  ++.+.-+....+.+.-..-..+-.++++|.+.+.=-+=-.+.-
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            367788888877766544443322221    1122  2333333333333322111112344556655443222234666


Q ss_pred             HHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHH
Q 020833          114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF  193 (321)
Q Consensus       114 v~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~  193 (321)
                      +|+.++.++++|+|-+..           .++-+|++++.+.-|.+            || +..+.-...|.+++..|.+
T Consensus       140 vFtVlLtyvllkqkTs~~-----------~~~~C~lIi~GF~lGvd------------qE-~~~~~ls~~GvifGVlaSl  195 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFF-----------ALGCCLLIILGFGLGVD------------QE-GSTGTLSWIGVIFGVLASL  195 (347)
T ss_pred             hHHHHhHHhhcccccccc-----------cceeehhheehheeccc------------cc-cccCccchhhhHHHHHHHH
Confidence            899999999998885542           12223443433322222            11 1222334789999999999


Q ss_pred             HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--cc-chhHHHHHHHHHHHHHHHHHHHHHH
Q 020833          194 MNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LG-LDIGLVAVLYSAVIGTGFRVGLCTW  269 (321)
Q Consensus       194 ~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~--~~-~~~~~~~l~~~g~~~t~~~~~l~~~  269 (321)
                      +-|+..+..|+...... ..+..+.|..+.+.++.+|...+.++-...++  .. ...-|..+...|+++-.++|.- .+
T Consensus       196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g~  274 (347)
T KOG1442|consen  196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVT-GW  274 (347)
T ss_pred             HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhee-eE
Confidence            99999999887665543 33677889999999988888776544222222  22 1234666777777665555542 23


Q ss_pred             HhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHh
Q 020833          270 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSD  311 (321)
Q Consensus       270 ~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~  311 (321)
                      -+|-.+|.+-.....--...=.++++..++|.-+..-+-|-+
T Consensus       275 QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~  316 (347)
T KOG1442|consen  275 QIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNI  316 (347)
T ss_pred             EEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeE
Confidence            345555554444444444455677889999988766554433

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.98  E-value=6e-05  Score=59.13  Aligned_cols=58  Identities=12%  Similarity=0.002  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          256 AVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       256 g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      ++++.+.++.++.+++++.+...+.+..++.|+++.++|++++||++|..+++|.+++
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~li  100 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFI  100 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            3456678899999999999999999999999999999999999999999999999874

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.97  E-value=7.6e-05  Score=68.88  Aligned_cols=118  Identities=15%  Similarity=0.175  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~   88 (321)
                      ...+....+.++++-+.....-|.+... .+.   .-.|                ++..++...|+..+  ..|++. ..
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~~~~~~~l~~~~W--~~G~~~~~~   62 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AGSGGRSYLRRPLW--WIGLLLMVL   62 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------ccchhhHHHhhHHH--HHHHHHHhc
Confidence            4456666777777777777777775332 110   0000                00001111222222  233333 45


Q ss_pred             HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhc
Q 020833           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (321)
Q Consensus        89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  155 (321)
                      ...+-+.|+.+.|++..+=+....-++.++++..+++||++++      ++.|..+++.|..+++..
T Consensus        63 g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   63 GEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF  123 (300)
T ss_pred             chHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence            5677789999999999888888888999999999999999765      579999999999887643

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.79  E-value=0.00046  Score=55.59  Aligned_cols=117  Identities=16%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-HHHH
Q 020833           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQ   90 (321)
Q Consensus        12 ~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~~~~   90 (321)
                      ++++..+.+.++=+...++-|.+.+. .++.......  ...+.    . .  .+         ...++..|+.. ..++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~~--~~~~~----~-~--~~---------p~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWDF--IAALL----A-F--GL---------ALRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhHH--HHHHH----H-H--hc---------cHHHHHHHHHHHHHHH
Confidence            36777888888888899999998754 4433322111  10100    0 0  00         11246677777 8889


Q ss_pred             HHHHHhhcccchhhHhhhhhhhHHHHHHHHHH--HhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        91 ~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l--~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+|.++++..+.+.+.-+.+..+..+.+.++.  +++|+++.+      |++|+.+.++|+.++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999998888888888774  799999875      5899999999998865

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.76  E-value=0.00032  Score=59.64  Aligned_cols=97  Identities=21%  Similarity=0.327  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCC
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  166 (321)
                      ...++.|..|++..++++++.+..+...|+.+++++++++|+..-      |+++.++++-|++++...+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence            456789999999999999999999999999999999999998754      5899999999998876321          


Q ss_pred             CCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020833          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK  208 (321)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~  208 (321)
                               ..-.+-+.|+.++..||+.-|+|-++-|+...+
T Consensus       128 ---------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  128 ---------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             ---------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                     011233789999999999999999999887655

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.58  E-value=0.00099  Score=60.11  Aligned_cols=132  Identities=10%  Similarity=0.012  Sum_probs=90.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS   88 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~   88 (321)
                      +..|+.+.++++.+.+.....+.|..   ++||....+=...-..+--..+..+.+++.   .+++.++ -++.|++-..
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~---~~k~~~~-nil~G~~w~i  207 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKKPF---FEKKSWK-NILTGLIWGI  207 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcccccc---cccchHH-hhHHHHHHHH
Confidence            56789999999999999988888873   478877766554433333223322221111   1222333 3566777667


Q ss_pred             HHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchh
Q 020833           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (321)
Q Consensus        89 ~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv  149 (321)
                      .+.+++.+.+....+.+-.+.++.+++..+-+.+++||+=+.|++  ...++|+++-++|.
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~  266 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGA  266 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhh
Confidence            788999999999999999999999999999999999999665542  23345555555554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.34  E-value=0.0026  Score=59.45  Aligned_cols=140  Identities=11%  Similarity=0.041  Sum_probs=101.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHHH
Q 020833            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTF--SILCSFFLLSVF   85 (321)
Q Consensus         8 ~~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~   85 (321)
                      .++.++.+.++.+++++|.+.+.-|..+. +.|+.++...=-+++.++..+......++...+.+|  +.....+.-++.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            46788999999999999999999999875 488888877777777777776665555543322322  222222222222


Q ss_pred             HHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (321)
Q Consensus        86 g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~  154 (321)
                      .+..+.+.-..+++++|+...+-.-+..++..++..++++|++++.      .++|.++.++|.++...
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            2555556667788898887777677888999999999999998753      57899999999888753

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.16  E-value=0.0053  Score=55.47  Aligned_cols=128  Identities=10%  Similarity=0.069  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-ccchhHHHHHHHHHHHHH
Q 020833          182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK-LGLDIGLVAVLYSAVIGT  260 (321)
Q Consensus       182 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~g~~~t  260 (321)
                      ..|+++.+.|-+.|..--.+.|. .++.+ +..+..+..+.+.......-....+...-++ ...+..+......++ --
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li   82 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LI   82 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HH
Confidence            45899999999999987776654 55553 5677777777776655554443322111111 122334555555555 34


Q ss_pred             HHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          261 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       261 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .....+|.|+..+-....+|+=-++.|.+.+++|.++++|+++..|++..++
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~l  134 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGL  134 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            5778899999999999999999999999999999999999999999998776

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.0054  Score=56.10  Aligned_cols=260  Identities=15%  Similarity=0.103  Sum_probs=140.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~   87 (321)
                      ++.++.+..+.+.++.|.++.+-|.++-.           .....       .  +.++.+....+++.+  -.|++- .
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~~-------~--ra~~gg~~yl~~~~W--w~G~ltm~   75 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGASG-------L--RAGEGGYGYLKEPLW--WAGMLTMI   75 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhhc-------c--cccCCCcchhhhHHH--HHHHHHHH
Confidence            45566777777788888888888876432           11100       0  111111122233222  234333 4


Q ss_pred             HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCC
Q 020833           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS  167 (321)
Q Consensus        88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  167 (321)
                      +....-|-|..+.|++..+-+.++.-+..++++..+++||++++.      .+|..+|++|-.+++.. +|..+..    
T Consensus        76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~h-aP~e~~i----  144 (335)
T KOG2922|consen   76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIH-APKEQEI----  144 (335)
T ss_pred             HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEe-cCccccc----
Confidence            455566677888898888888899999999999999999998765      68999999999998743 3321100    


Q ss_pred             CCCCccc-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--------HHH--HHhcc
Q 020833          168 GSPRRLL-LSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILST--------AFA--LIVVS  236 (321)
Q Consensus       168 ~~~~~~~-~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~--------~~~--l~~~~  236 (321)
                      .+.++.. --.+..+..-..+.++...      ++.=...+++. ...+..|..+++.+.++        -.+  +...+
T Consensus       145 ~t~~el~~~~~~~~Fliy~~~iil~~~------il~~~~~p~~g-~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g  217 (335)
T KOG2922|consen  145 ESVEEVWELATEPGFLVYVIIIILIVL------ILIFFYAPRYG-QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG  217 (335)
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHH------HHheeeccccc-ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC
Confidence            0000000 0011111111111111111      11111123322 12233444444433211        111  11121


Q ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhh-HHHHHHHHHHHHhcC--ccchhhhHHHhh
Q 020833          237 EPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGD--AFCLGRILCSDV  312 (321)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l-~Pv~a~i~~~~il~E--~~t~~~~iG~~l  312 (321)
                      .. +...  +..|..++.... +........+++++..+++.++++.|. -..++++-|.+.++|  ..+..++.+-++
T Consensus       218 ~~-ql~~--~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~  292 (335)
T KOG2922|consen  218 NN-QLFY--PLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELC  292 (335)
T ss_pred             Cc-cccc--HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            11 2111  234554444443 555666667999999999999998887 677888889999998  444555554443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0088  Score=53.00  Aligned_cols=131  Identities=13%  Similarity=0.027  Sum_probs=101.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH-H
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~   87 (321)
                      .+..+..+.+.+..+|+..-+..|.+-+ ..+-..-+..-+..++++.+|+-.-.  ....-.+.+-...-...|+++ .
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~--ag~~l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ--AGPALFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh--cchhhcChHHHHHHHHHHHHhcc
Confidence            3566777788889999999999998744 36667788888999999999985421  111112344445556678888 8


Q ss_pred             HHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhch
Q 020833           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG  148 (321)
Q Consensus        88 ~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~G  148 (321)
                      +.+.+...+++..|...=+++.++.|.+.++.++++++|+++..+      |+++..-+++
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaA  276 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAA  276 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHH
Confidence            999999999999999999999999999999999999999998765      5555544443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.02  Score=51.35  Aligned_cols=228  Identities=13%  Similarity=0.112  Sum_probs=137.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhc
Q 020833           69 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  147 (321)
Q Consensus        69 ~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~-~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~  147 (321)
                      ++.+.|++  .+...++ +..+.+-.+++++ ++--.=.++-.-.++.++++++++.+.|-+.+      |+.++++--+
T Consensus        60 ~kiplk~Y--~i~V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi  130 (330)
T KOG1583|consen   60 PKIPLKDY--AITVAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI  130 (330)
T ss_pred             CCCchhhh--heehhee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence            45555553  2223333 3445566777766 34333344445667888999999988887655      5888988889


Q ss_pred             hhhhhhhcCCCCCcCCCCCCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Q 020833          148 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTIL  226 (321)
Q Consensus       148 Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~  226 (321)
                      |+++-...+.++... -.++.+.+ +.......|..|+.+...|-+.-|.-.+.+++.-||+. |+-..++|.-......
T Consensus       131 GiiIcTl~s~~d~~~-~~~~l~~~-~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~  208 (330)
T KOG1583|consen  131 GIIICTLFSSKDGRS-KLSGLDSG-SAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL  208 (330)
T ss_pred             hheeEEeecCcchhh-hhcccccC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch
Confidence            987765544443321 00000000 00112234578998888888888888888887767665 5556677777665433


Q ss_pred             HHHHH--------HHhccC---CCCccccchhHHHHHHHHHHHHHHHH-HHHH---HHHhcccCcchhhhhhhhHHHHHH
Q 020833          227 STAFA--------LIVVSE---PSDWKLGLDIGLVAVLYSAVIGTGFR-VGLC---TWCLSRTGPLYVSMFKPLAIVFSI  291 (321)
Q Consensus       227 ~~~~~--------l~~~~~---~~~~~~~~~~~~~~l~~~g~~~t~~~-~~l~---~~~l~~~~a~~~s~~~~l~Pv~a~  291 (321)
                      .+...        ....++   .+......+..|..++     ..++. |.|-   +..-.+.++-+++++..+.-.++.
T Consensus       209 Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-----~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSL  283 (330)
T KOG1583|consen  209 FLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-----FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSL  283 (330)
T ss_pred             HHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH-----HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHH
Confidence            32211        000000   0011111233454433     33333 4432   223356677789999999999999


Q ss_pred             HHHHHHhcCccchhhhHHHhh
Q 020833          292 VMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       292 i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +++.+.+++++|+..++|.++
T Consensus       284 l~SiiyF~Npft~~h~lGa~l  304 (330)
T KOG1583|consen  284 LFSIIYFENPFTPWHWLGAAL  304 (330)
T ss_pred             hheeeEecCCCCHHHHHHHHH
Confidence            999999999999999999988

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.01  E-value=0.017  Score=47.09  Aligned_cols=124  Identities=15%  Similarity=0.092  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 020833          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV  264 (321)
Q Consensus       185 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~  264 (321)
                      .++.+++...-++...++.++.++..+|+.-+++.+..|.+.+.++..+.++.  +++......|.  .|+|=+.++..-
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w--~~lGG~lG~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWW--AYLGGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChH--HhccHHHHHHHH
Confidence            46778889999999999999999876688888999999999888887776542  11111111122  122333455666


Q ss_pred             HHHHHHhcccCcchhhhhhhh-HHHHHHHHHHH----HhcCccchhhhHHHhh
Q 020833          265 GLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVV----IVGDAFCLGRILCSDV  312 (321)
Q Consensus       265 ~l~~~~l~~~~a~~~s~~~~l-~Pv~a~i~~~~----il~E~~t~~~~iG~~l  312 (321)
                      .+..+..++.|++........ |-+.+.+++.+    .-++++|+..++|.++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l  131 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLAL  131 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHH
Confidence            677888999999876655544 88888899987    5567899999999876

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.93  E-value=0.02  Score=52.96  Aligned_cols=135  Identities=21%  Similarity=0.250  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHH--hhhcCC----CCCCHHHHHHHHHHHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFL--FHRSER----PQLTFSILCSFFLLSVF   85 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~g~~   85 (321)
                      +++.++++.+.-|.....-+...+. +.++.+..++--.++.++..+....  ......    ...+.+.+..++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            8899999999999999999887744 6899999999999988887766554  111110    01112234445556666


Q ss_pred             HHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        86 g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      +...+.+.+.-.+..++...+++..+--+.+.+++.++++++++..      +|.|+++.+.|..+-.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            7777778888889999999999999999999999999999998765      5899999999987754

; GO: 0055085 transmembrane transport

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.057  Score=48.46  Aligned_cols=275  Identities=9%  Similarity=0.094  Sum_probs=155.1

Q ss_pred             hhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 020833            6 GSMRAALPSVGMVIVLL-AQVSNMEVIKAAMS-KGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFL   81 (321)
Q Consensus         6 ~~~~~~~~~l~l~~~~~-~wg~~~~~~K~~~~-~~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~   81 (321)
                      +-.+||..++....+.+ .+=.+...-.+... .++.|  +.+++.+++.=.-+-+.-+.. .+.+++..++|.   +..
T Consensus        36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~-~~~k~r~iP~rt---Y~~  111 (367)
T KOG1582|consen   36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL-IQTKRRVIPWRT---YVI  111 (367)
T ss_pred             ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe-ecccceecchhH---hhh
Confidence            33456666665555544 22333333333221 24665  345555555433332221111 122333455654   233


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHhhhhh---hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCC
Q 020833           82 LSVFGCSSQIFSFVGIQYSSPTLSTAMLN---LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (321)
Q Consensus        82 ~g~~g~~~~~~~~~al~~~~a~~a~~l~~---~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~  158 (321)
                      ++.+-...+-+-.-++.|.+=- +.++.-   +.|+.  +.+.++-+.|-      ...+.++..+-.+|++.....  +
T Consensus       112 la~~t~gtmGLsn~SlgYLNYP-tQviFKccKliPVm--iggifIqGkRY------~v~d~~aA~lm~lGli~FTLA--D  180 (367)
T KOG1582|consen  112 LAFLTVGTMGLSNGSLGYLNYP-TQVIFKCCKLIPVM--IGGIFIQGKRY------GVHDYIAAMLMSLGLIWFTLA--D  180 (367)
T ss_pred             hHhhhhhccccCcCccccccCc-HHHHHHhhhhhhhh--heeeeeccccc------cHHHHHHHHHHHHHHHhhhhc--c
Confidence            3332222222333334443211 234432   45543  33555544443      345667777777898776532  1


Q ss_pred             CCcCCCCCCCCCCcccCCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020833          159 PLIGELSHSGSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVS  236 (321)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~l~~~~  236 (321)
                      +                ..+++ ...|....-.|-++=|+-..+|.+..|.++ +...+.++...+|.+.+......++.
T Consensus       181 s----------------~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge  244 (367)
T KOG1582|consen  181 S----------------QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE  244 (367)
T ss_pred             c----------------ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc
Confidence            1                11222 257887777777777887788888887765 44567788888898888887777655


Q ss_pred             CCCCccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          237 EPSDWKL---GLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       237 ~~~~~~~---~~~~~~~~l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      -.+.|+.   .+.......++.+. .+.++...-.-.++..|+..++.+....--.+++++.+++..++|.+..-|+.+
T Consensus       245 ~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gll  322 (367)
T KOG1582|consen  245 LFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLL  322 (367)
T ss_pred             chhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHH
Confidence            4445543   22233444444443 445555555556778899999999999999999999999999999887776665

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.42  E-value=0.089  Score=49.42  Aligned_cols=145  Identities=12%  Similarity=0.001  Sum_probs=87.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHH-HHHHHh-hh-cCC-----C
Q 020833            8 MRAALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFL-FCSFLF-HR-SER-----P   69 (321)
Q Consensus         8 ~~~~~~~l~l~~~~~~wg~~~-------~~~K~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~-~~-~~~-----~   69 (321)
                      .+..|+.+.++++.+.++...       +..+.+.+.+.+|.....-.+.   ++.++.- .++.+. +| ++.     .
T Consensus       170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~  249 (345)
T PRK13499        170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF  249 (345)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence            356889999999988888877       6676665567887765555544   4444322 222321 12 111     1


Q ss_pred             CCC----HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhh---hh-hhhHHHHHHHHHHHhhccccccccccchhhhh
Q 020833           70 QLT----FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLG  141 (321)
Q Consensus        70 ~~~----~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~---l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g  141 (321)
                      +.+    +++....++.|++=+..+.++.+|....+...+.+   +. ++.-++..+-+. ++||+=+-.+|..+.-++|
T Consensus       250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence            111    22222234444444677778888888775555544   54 344355554455 6899977545556667889


Q ss_pred             HHHhhchhhhhh
Q 020833          142 TFASIGGAFVVT  153 (321)
Q Consensus       142 ~~l~~~Gv~ll~  153 (321)
                      +++-++|..++.
T Consensus       329 ~vliI~g~~lig  340 (345)
T PRK13499        329 CVVIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHHHh
Confidence            988888887765

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.38  E-value=0.011  Score=44.69  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHhcccCcchh-hhhhhhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          257 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       257 ~~~t~~~~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      +.+-++++.++.+++|+.+...+ +...-+..+...+.|++++||++|+.+++|..++
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33567888999999999998876 4455688999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.12  E-value=0.017  Score=45.26  Aligned_cols=109  Identities=15%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020833           18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGI   97 (321)
Q Consensus        18 ~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al   97 (321)
                      +++.++||.+.++.|.+.+. .++..-.. |..--...                -.+++.+.+... +.-...+.|++.+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~----------------Ll~n~~y~ipf~-lNq~GSv~f~~~L   62 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF----------------LLLNPKYIIPFL-LNQSGSVLFFLLL   62 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH----------------HHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence            45788999999999998654 55433321 31111111                011222332222 2234457888999


Q ss_pred             cccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833           98 QYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus        98 ~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      ...+.+.+.-+. ++.=++|++.++++++|..+++      .++|+.+.++|+.+
T Consensus        63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL  111 (113)
T ss_pred             hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence            999999888886 4677888888877765554433      48999999999865

Many members are annotated as potential transmembrane proteins.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.99  E-value=0.039  Score=50.98  Aligned_cols=109  Identities=13%  Similarity=0.040  Sum_probs=76.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHH
Q 020833          180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIG  259 (321)
Q Consensus       180 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  259 (321)
                      ++..|..+++.++++.+...+++|+-.+|.++  .-.--.                ...  .+...+..|.    .|...
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~--~~~~~~----------------~~~--~~~l~~~~W~----~G~~~   59 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR--GSLRAG----------------SGG--RSYLRRPLWW----IGLLL   59 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccc----------------chh--hHHHhhHHHH----HHHHH
Confidence            46789999999999999999999887666432  000000                000  0000001122    23333


Q ss_pred             HHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          260 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       260 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+++..+...++...+++.++++..+.-++..+++..++||+++...++|+++
T Consensus        60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l  112 (300)
T PF05653_consen   60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCAL  112 (300)
T ss_pred             HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHH
Confidence            44555666677788899999999999999999999999999999999999987

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=95.63  E-value=0.03  Score=51.88  Aligned_cols=137  Identities=16%  Similarity=0.171  Sum_probs=98.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhhcCC---C--CCCHHHHHHHH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAM---SKGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSFF   80 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~---~~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~~   80 (321)
                      ++.+.+....+.+..+...+++|..+   ++..+++.+..+-.-++..+++ |+.........   .  ..+.+.+ ...
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~-~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFL-ILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhH-HHH
Confidence            57889999999999999999999987   3359999999999889998888 87655332221   0  1122222 222


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        81 ~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ...++.+..+...|+.+.++||-.=++...+==.++...++++++|+++..      +.+|..++++|+.+-.
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            334555777888899999998876565554333444556788888888665      5899999999998754

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.57  E-value=0.04  Score=43.73  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ..+++++..++++.|.+.|=.+. ...-+.+.+.+.++++|+++++      |++|+.+-++|++.+-
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            67888999999999999887665 4777888889999999999875      5899999999997764

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.50  E-value=0.23  Score=38.64  Aligned_cols=60  Identities=13%  Similarity=0.082  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll  152 (321)
                      ..++.+...++++.|.+.+=.+.. .--+.+.+.+.++++|++++.      |++|+.+-+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            677888899999999998765543 666777888999999999875      589999999998764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.40  E-value=0.063  Score=41.93  Aligned_cols=65  Identities=15%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             HHHH-HHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           83 SVFG-CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        83 g~~g-~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      .+.+ .+++.++..++++.|.+.|=.+. ..--+.+.+.++++++|++++.      |++|+.+-++|++.+-
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3444 67788889999999999876664 3666777889999999999875      5899999999998874

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.38  E-value=0.046  Score=42.14  Aligned_cols=61  Identities=15%  Similarity=0.071  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhhcccchhhHhhhh-hhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~-~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ..++.+...++++.|.+.|=.+. ..--+-+.+.++++++|+++..      |++|+.+-++|++.+-
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            67788999999999999876554 4667788889999999999865      5899999999987753

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.32  E-value=0.093  Score=40.99  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhcccCcchh-hhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          257 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       257 ~~~t~~~~~l~~~~l~~~~a~~~-s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +.+-..++.++..++|+.+...+ +...-+.-+...+.|++++||++|+.+++|.++
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~l   93 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML   93 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            44557788888999999887643 333556788889999999999999999999988

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.14  E-value=0.09  Score=41.71  Aligned_cols=57  Identities=9%  Similarity=0.220  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCcchhh-hhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          256 AVIGTGFRVGLCTWCLSRTGPLYVS-MFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       256 g~~~t~~~~~l~~~~l~~~~a~~~s-~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+.+-++++.++.+++|+++...+= ...-+.-+...+.|++++||++|+.+++|.++
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~l   93 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTT   93 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            3445678899999999999877543 33457888899999999999999999999988

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.10  E-value=0.65  Score=37.79  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHH-HHH
Q 020833           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAF-TFV  118 (321)
Q Consensus        40 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~-~~l  118 (321)
                      +|..-.+.-+..+.+.+..+..+.+++.....+ +..++...-|++|.....+..+..+..+++.+..+.-+.-+. ..+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~  107 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL  107 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            599999999999999888776664443222111 112234457888877778888999999999888776554433 333


Q ss_pred             HHHH--HhhccccccccccchhhhhHHHhhchhhh
Q 020833          119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus       119 l~~l--~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      +..+  +..||    ++.+..|.+|+.+.++|+.+
T Consensus       108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence            4443  22222    23455679999999999753

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.07  E-value=0.094  Score=40.59  Aligned_cols=60  Identities=10%  Similarity=-0.024  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll  152 (321)
                      ..++.+...++++.|.+.+=.+.. .--+-+.+.+.++++|++++.      |++|+.+-++|++.+
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l  100 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence            677888899999999998766654 667778889999999999875      589999999998775

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.06  E-value=0.026  Score=50.51  Aligned_cols=123  Identities=12%  Similarity=0.146  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHH
Q 020833          182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  261 (321)
Q Consensus       182 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~  261 (321)
                      .+|..+.-++ ..+....+..++..+..  |....-...++-..+..+..+... ++ -|..+....|+  +.=|+.+ .
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~-~~-v~gp~g~R~~L--iLRg~mG-~  108 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYM-QP-VIGPEGKRKWL--ILRGFMG-F  108 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEe-ee-eecCCCcEEEE--Eeehhhh-h
Confidence            4677777777 66666677777776653  333332333222222222211111 11 11111111222  2223322 3


Q ss_pred             HHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          262 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       262 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+..+.+|++++++-+.++++.++.|+++++++|.+++|+.|....+|..+
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~i  159 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLI  159 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            445666788999999999999999999999999999999999999998876

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.99  E-value=0.66  Score=38.18  Aligned_cols=128  Identities=15%  Similarity=0.097  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHH
Q 020833          182 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG  261 (321)
Q Consensus       182 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~  261 (321)
                      ....+..+++..+-....-.+.++.+...+|..-..+.+.+|++.+..+.++.+..+ ++.......|.. ..-|+ ..+
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~-~~GG~-lGa   80 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWA-WIGGL-LGA   80 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHH-HHccc-hhh
Confidence            345678888899999999999998888777888888999999999998888754322 122111111221 11233 222


Q ss_pred             HHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHHhc----CccchhhhHHHhh
Q 020833          262 FRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVIVG----DAFCLGRILCSDV  312 (321)
Q Consensus       262 ~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~il~----E~~t~~~~iG~~l  312 (321)
                      +--..-.....++|++ ++.....-|-+.+.+++.+=+.    .+++...++|.++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L  136 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILL  136 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHH
Confidence            2223345667888776 4555566688888888887666    6888988888877

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.83  E-value=0.1  Score=39.38  Aligned_cols=52  Identities=17%  Similarity=0.063  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhcccchhhHhhh-hhhhHHHHHHHHHHHhhccccccccccchhhhhHHH
Q 020833           87 CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  144 (321)
Q Consensus        87 ~~~~~~~~~al~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l  144 (321)
                      ..++.++..++++.|.+.+=.+ ..+..+.+.+.+.++++|+++.++      +.|+.+
T Consensus        40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            6778899999999999998444 458888999999999999998764      566653

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=94.71  E-value=0.6  Score=36.35  Aligned_cols=55  Identities=4%  Similarity=-0.008  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHhcccCcch-hhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          258 IGTGFRVGLCTWCLSRTGPLY-VSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       258 ~~t~~~~~l~~~~l~~~~a~~-~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+-.++|.+...++|+++... -+...-+.-+...+.|++++||++|+.+++|.++
T Consensus        43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~l   98 (109)
T PRK10650         43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVL   98 (109)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            355788999999999998763 3556667888899999999999999999999887

>PRK11431 multidrug efflux system protein; Provisional

Probab=94.05  E-value=0.25  Score=38.20  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          257 VIGTGFRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       257 ~~~t~~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +.+-..+|.+...++|+++.. --+...-+..+...+.|++++||++|+.+++|..+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~l   92 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLAL   92 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            335578889999999998866 34566667889999999999999999999999887

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=93.89  E-value=0.25  Score=38.16  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcccCcc-hhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          259 GTGFRVGLCTWCLSRTGPL-YVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       259 ~t~~~~~l~~~~l~~~~a~-~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +-..+|.+..+++|+++.. --+...-+..+...+.|++++||++|..+++|..+
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~L   93 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLAL   93 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            4568889999999998765 34667778889999999999999999999999887

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.01  E-value=0.017  Score=51.07  Aligned_cols=268  Identities=12%  Similarity=0.080  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (321)
                      .++..++=++.||+...++..-  . =+|.+-..- ..++++++....+++.+   |-.+.+.+..-++.|++=...+..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~--G-G~p~qQ~lG-tT~GALifaiiv~~~~~---p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF--G-GKPYQQTLG-TTLGALIFAIIVFLFVS---PELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec--C-CChhHhhhh-ccHHHHHHHHHHheeec---CccchhhHHHHHHhhhHhhhhhhh
Confidence            4566777789999988877652  2 344332222 23444444443333322   234455554444555554677888


Q ss_pred             HHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhhcCCCCCcCCCCCCCCCC
Q 020833           93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (321)
Q Consensus        93 ~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  171 (321)
                      .+.|.++.+.+++.=+.. +.-+-+-+++.+.++|=-+..+.  ..-.+++++-++|+.+=. .+.+     +++     
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs-~~~~-----~nk-----  142 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTS-KQDR-----NNK-----  142 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEee-eecc-----ccc-----
Confidence            899999999998776654 55566666777788876443321  011223444455554321 1111     000     


Q ss_pred             cccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHH
Q 020833          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA  251 (321)
Q Consensus       172 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  251 (321)
                        ++++..+.-.|....+.|.+.|-.|.++.+...  . |.++...-| .+|.+......-....+. ..+   ...|..
T Consensus       143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLPq-AiGMv~~ali~~~~~~~~-~~~---K~t~~n  212 (288)
T COG4975         143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILPQ-AIGMVIGALILGFFKMEK-RFN---KYTWLN  212 (288)
T ss_pred             --cccChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhHH-HHHHHHHHHHHhhccccc-chH---HHHHHH
Confidence              122334457899999999999999999866543  2 233332222 233322222221222111 000   112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          252 VLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       252 l~~~g~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      + .-|+ .=.++-..+..+.++.|..+.=.++-+..+.+.+=|.++++|+=|..++.....
T Consensus       213 i-i~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i  271 (288)
T COG4975         213 I-IPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII  271 (288)
T ss_pred             H-hhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence            2 2233 224455666777788887766556666778899999999999988777654433

>TIGR00803 nst UDP-galactose transporter

Probab=92.27  E-value=1  Score=39.32  Aligned_cols=63  Identities=11%  Similarity=0.100  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus        83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      .+.+.....+..+.++|.++..-+....+.++++.+++.++++|+++..      +++|..+.+.|+.+
T Consensus       159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l  221 (222)
T TIGR00803       159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence            3444556678889999999999999999999999999999999998764      58999998888643

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=91.57  E-value=1.6  Score=41.12  Aligned_cols=138  Identities=12%  Similarity=0.149  Sum_probs=93.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCCHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHR---SERPQLTFSILCSFFLL   82 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~   82 (321)
                      +...+.+..+++++.+|...++.|.-.+++   .|-..+-.+=-++..++++|...+..+   .+..-.+..+...++..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            346788999999999999999999854432   455555555556666677754443222   11111122334456677


Q ss_pred             HHHH-HHHHHHHHHhhcccchhhHhhhhh-hhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        83 g~~g-~~~~~~~~~al~~~~a~~a~~l~~-~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ++++ .++=++|.+|.-.+++..+++=+. +.|+- ++...++.+.      .++...++|...-++|-+++.
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA-~~aD~l~k~~------~~S~~~iiGsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLA-MFADVLIKGK------HPSALYIIGSIPIFVGFVIVN  389 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHH-HHHHHHHcCC------CCCHHHHHHHHHHHHHHhhee
Confidence            8888 899999999999999988887776 66753 4445555333      356678999988888877764

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.40  E-value=6.2  Score=32.52  Aligned_cols=118  Identities=8%  Similarity=-0.002  Sum_probs=66.9

Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhh
Q 020833           30 VIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML  109 (321)
Q Consensus        30 ~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~  109 (321)
                      =++++... =+|..-.+.-+..+...+..+.....++.......+...+...-|++|..+-..-........++....+.
T Consensus        24 N~qL~~~~-~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~  102 (150)
T COG3238          24 NGRLARYL-GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALV  102 (150)
T ss_pred             HHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHH
Confidence            34444322 36888899999998888887766532222122112223344456777755555555666666666555444


Q ss_pred             hhh-HHHHHHHHHH-HhhccccccccccchhhhhHHHhhchhhh
Q 020833          110 NLI-PAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus       110 ~~~-Pv~~~ll~~l-~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      -.. -+...++..+ +++++   ++.++..+++|+++.++|+.+
T Consensus       103 i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~  143 (150)
T COG3238         103 IAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILL  143 (150)
T ss_pred             HHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHH
Confidence            333 3333333333 22332   234567789999999999544

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.92  E-value=2  Score=39.56  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhcC-----CC-CCCHHHHHHHHHH
Q 020833           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RP-QLTFSILCSFFLL   82 (321)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~~   82 (321)
                      +.++|.++....+.-....+-.|...+. +.+-+.+++|--+++.+.+....++.+...     .+ ..+...+....+-
T Consensus       155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence            3447888888888888888888887655 467788999999999888877765543211     01 1112223445555


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ++++++-.++-+++.+..|+..-++.....-.-+.+...+++++++++-      ..+|+.++++|-++-.
T Consensus       235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            6777777789999999999988777775555556666666777777653      4899999999987754

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.88  E-value=0.41  Score=44.10  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=80.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHH
Q 020833          177 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSA  256 (321)
Q Consensus       177 ~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g  256 (321)
                      ...++..|.++.+.+.+......++.||..+|.. .   ..              . ..++ .....--.+.|    |.|
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~--------------~-ra~~-gg~~yl~~~~W----w~G   70 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SG--------------L-RAGE-GGYGYLKEPLW----WAG   70 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hc--------------c-cccC-CCcchhhhHHH----HHH
Confidence            3455678999999999999999988877766642 1   00              0 1111 11111101112    346


Q ss_pred             HHHHHHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          257 VIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       257 ~~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .+...++-...+-+....+++.++++..+.-+...+++..+++|++++...+|+++
T Consensus        71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l  126 (335)
T KOG2922|consen   71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVL  126 (335)
T ss_pred             HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeE
Confidence            66666777777777777899999999999999999999999999999999999988

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=86.21  E-value=2.9  Score=37.39  Aligned_cols=52  Identities=15%  Similarity=0.195  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          261 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       261 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .++-.+.+.++++++|+...+......+++.+++++++|.+++..|+++..+
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~l   79 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFL   79 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence            4555677889999999999999999999999999999999999999999887

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=85.90  E-value=0.45  Score=42.25  Aligned_cols=115  Identities=7%  Similarity=-0.038  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHH
Q 020833          184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR  263 (321)
Q Consensus       184 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~  263 (321)
                      +.+++|+=++.|...-....|...   +|..-+.-.. +|+++..+..+++ .+|. .+   ...++.-+..|. .=.++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT-~GALifaiiv~~~-~~p~-~T---~~~~iv~~isG~-~Ws~G   72 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTT-LGALIFAIIVFLF-VSPE-LT---LTIFIVGFISGA-FWSFG   72 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhcc-HHHHHHHHHHhee-ecCc-cc---hhhHHHHHHhhh-Hhhhh
Confidence            456788888888876655444332   2333332222 3333333332222 2221 11   112332233344 23467


Q ss_pred             HHHHHHHhcccCcchhhhhhh-hHHHHHHHHHHHHhcCccchhhhH
Q 020833          264 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGRIL  308 (321)
Q Consensus       264 ~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~i~~~~il~E~~t~~~~i  308 (321)
                      +..+..+++..|.+++.+++. .|-+-+.++|++.++|-.++.+++
T Consensus        73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~I  118 (288)
T COG4975          73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQII  118 (288)
T ss_pred             hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHH
Confidence            888999999999999998876 588999999999999988877654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=85.15  E-value=1.3  Score=39.07  Aligned_cols=71  Identities=18%  Similarity=0.263  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhh
Q 020833           76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (321)
Q Consensus        76 ~~~~~~~g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll  152 (321)
                      +..+.+.++.+...+.+.|.-+.+-++-..+++..+--.|+++.+.++++..++.|      ||+|..+.+.|...=
T Consensus       241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            34455677777788999999999999998999999999999999999999998765      589999999887553

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=82.35  E-value=23  Score=31.96  Aligned_cols=135  Identities=11%  Similarity=0.017  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020833           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (321)
Q Consensus        13 ~~l~l~~~~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (321)
                      ++++.+++.+.+|++++-.|.- +. -|++.+-++-.. +..+...+... -+. .++.    ....++-|.+=...+.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~-~i~~~g~~v~~-~~~-~p~f----~p~amlgG~lW~~gN~~   71 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCS-GIFLVGLVVNL-ILG-FPPF----YPWAMLGGALWATGNIL   71 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHH-HHHHHHHHHHH-hcC-CCcc----eeHHHhhhhhhhcCcee
Confidence            4678889999999999999984 44 577554444322 22222222222 121 2221    12233444544556667


Q ss_pred             HHHhhcccchhhHhhhhhhhHHHHHHH-HHH-HhhccccccccccchhhhhHHHhhchhhhhhhcCC
Q 020833           93 SFVGIQYSSPTLSTAMLNLIPAFTFVL-AII-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG  157 (321)
Q Consensus        93 ~~~al~~~~a~~a~~l~~~~Pv~~~ll-~~l-~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~  157 (321)
                      ..-.++....+.+-.+.++.-+.+--. +.+ +++++.+..+ ......+|++++++|..+..+-|.
T Consensus        72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~  137 (254)
T PF07857_consen   72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKS  137 (254)
T ss_pred             ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecC
Confidence            778889999999988888655444333 222 3444433322 245668899999999888765443

The region concerned is approximately 280 residues long.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=81.56  E-value=2.1  Score=36.80  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcccCcchhhhhhhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          263 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       263 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      +-++|..++++++|+.++.+....--|..+++++.+||++....++..++
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaail  115 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAIL  115 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            45788999999999999999999999999999999999999988887766

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=80.87  E-value=6.9  Score=30.64  Aligned_cols=102  Identities=10%  Similarity=-0.022  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 020833          190 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW  269 (321)
Q Consensus       190 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~t~~~~~l~~~  269 (321)
                      +-++.|++.+-+.|+..+..++...- . +..-... .    ++.     +|..     +.     .+.....+-..|++
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~-~----Ll~-----n~~y-----~i-----pf~lNq~GSv~f~~   60 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIK-F----LLL-----NPKY-----II-----PFLLNQSGSVLFFL   60 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHH-H----HHH-----hHHH-----HH-----HHHHHHHHHHHHHH
Confidence            34678888888888887765422221 1 2111111 1    111     1111     11     23344455677888


Q ss_pred             HhcccCcchhhhhh-hhHHHHHHHHHHHHhcCccchhhhHHHhhh
Q 020833          270 CLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGRILCSDVG  313 (321)
Q Consensus       270 ~l~~~~a~~~s~~~-~l~Pv~a~i~~~~il~E~~t~~~~iG~~l~  313 (321)
                      .+++.+-+.+.++. .+.=+++.+.|+++.+|..+...++|..+.
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li  105 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALI  105 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHH
Confidence            89999999888884 889999999999999999899999998873

Many members are annotated as potential transmembrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=80.80  E-value=22  Score=32.79  Aligned_cols=136  Identities=15%  Similarity=0.170  Sum_probs=89.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCCHHHHHHHHHH
Q 020833            9 RAALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-----QLTFSILCSFFLL   82 (321)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~   82 (321)
                      +...++..+....+.=|.....-+.... ..+++..+.++--++.++.-.... +-....++     +.+.+-++.+++.
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHH
Confidence            4455666666666555555544444333 358888888877666665444332 21111111     2334445667788


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHhhhhhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhh
Q 020833           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (321)
Q Consensus        83 g~~g~~~~~~~~~al~~~~a~~a~~l~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~l  151 (321)
                      .++|++.+.+.|+-++.-.+-.=+.+..+=-++.++++.+.++.++++.      ||+|+.+-+-|+.+
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFL  310 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHH
Confidence            8888888988888888776666666677777888999999999998776      46888888777655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.3
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.08
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.97
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.88

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.30  E-value=8.9e-07  Score=70.94  Aligned_cols=58  Identities=14%  Similarity=0.042  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccCcchhhhh-hhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          255 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       255 ~g~~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .++++++++|.+|.+++|+.+++++.++ ..+.|+++.++|++++||++|+.+++|+++
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~L   93 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML   93 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            4677899999999999999999999998 899999999999999999999999999988

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.08  E-value=8.7e-06  Score=62.71  Aligned_cols=58  Identities=14%  Similarity=0.042  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHhcccCcchhhhh-hhhHHHHHHHHHHHHhcCccchhhhHHHhh
Q 020833          255 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGRILCSDV  312 (321)
Q Consensus       255 ~g~~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~i~~~~il~E~~t~~~~iG~~l  312 (321)
                      .++++.+.+|.++.+++|+.+.+.+.++ ..+.|+++.+.|++++||++|..+++|.++
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~l   93 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMML   93 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            4566788999999999999999999888 799999999999999999999999999888

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.97  E-value=1e-05  Score=64.69  Aligned_cols=68  Identities=13%  Similarity=0.219  Sum_probs=50.3

Q ss_pred             HHHHHH-HHHHHHHHHhhcccchhhHhhh-hhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhhh
Q 020833           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (321)
Q Consensus        81 ~~g~~g-~~~~~~~~~al~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~~  154 (321)
                      +.+++. .++++++..++++.+++.+..+ .++.|++++++++++++|+++++      +++|+.+.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            456665 7888999999999999999888 79999999999999999999876      48999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.88  E-value=2.6e-05  Score=60.04  Aligned_cols=67  Identities=13%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             HHHHHH-HHHHHHHHHhhcccchhhHhhh-hhhhHHHHHHHHHHHhhccccccccccchhhhhHHHhhchhhhhh
Q 020833           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (321)
Q Consensus        81 ~~g~~g-~~~~~~~~~al~~~~a~~a~~l-~~~~Pv~~~ll~~l~~~Er~~~~~~~~~~~~~g~~l~~~Gv~ll~  153 (321)
                      ..++++ ..++.++..++++.|.+.+..+ ..+.|++++++++++++|+++.+      |++|+.+.++|++++.
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            455555 7888899999999999999888 68999999999999999999765      5899999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00