Citrus Sinensis ID: 020840

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLRFVQKRWS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHcccccccccccccHHHHHcccccccEEEEEccccccccccEEEEEcccccccccEEEEEEccEEEEEEEEEcccccccEEccccccccccHHHHcccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccHHHHHHHcccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHccHHHHHcEEEEEEccHHHHHHHHHHHcccccccccccccEEEccccccccEEEcccHHHccccccEEEEEHHHHHccccHEEEEccccEEEEEEEEcccccEEEEEccccccHHHHHHccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqlrklslqpssplrvlsskypfpllqkwsrfssssssesqipnshsveplddnrsehaSTAIsidrsglynppehsherKLESELVKHLKGIIKFRGGPISVAEYMEEVltnpkagfyinrdvfgaegdfitspevSQMFGEMVGVWAMCLWEqmgqpnrvnlvelgpgrgtLMADLLRGASKFKNFTESLHIHLVecsptlqklqhhnlkcmdennandnveertisslagtpvswhaaleqvpsgfptIIVAHEFydalpvhqfqkttRGWCEKLVDIAEDSSLHQQLSFCCsaasglqiknwrsLSTLRFVQKRWS
Flexible Loop (DISEMBL)
mqlrklslqpssplrvlssKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAasglqiknwrslstlrfvqkrws
Low Complexity Region (SEG)
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWsrfssssssesqipnshsVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLRFVQKRWS
Disordered region (IsUnstruct)
*************************************************************************************LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM*************ISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLRFVQ****
Disordered Region (DISOPRED)
****************************************************************************************HLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLR*******
Disordered Region (DISEMBL)
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWS****************************ASTAISIDRSGLY**********LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLRFVQKRWS
Disordered Region (DISPRO)
*******LQPSSPLRVLSSKYPFPLLQKW*****************************************************ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLRFVQKRWS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNWRSLSTLRFVQKRWS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q54S83	484	NADH dehydrogenase [ubiqu	yes	no	0.818	0.541	0.414	1e-56
Q9VGR2	437	NADH dehydrogenase [ubiqu	yes	no	0.675	0.494	0.480	6e-51
Q08BY0	422	NADH dehydrogenase [ubiqu	yes	no	0.609	0.462	0.470	1e-48
Q6GQ37	437	NADH dehydrogenase [ubiqu	N/A	no	0.706	0.517	0.436	3e-48
Q2KHV5	441	NADH dehydrogenase [ubiqu	yes	no	0.731	0.530	0.437	4e-48
Q5BKM6	430	NADH dehydrogenase [ubiqu	yes	no	0.637	0.474	0.471	3e-47
Q9CWG8	436	NADH dehydrogenase [ubiqu	yes	no	0.743	0.545	0.431	7e-47
Q7L592	441	NADH dehydrogenase [ubiqu	yes	no	0.659	0.478	0.438	1e-46
Q5XI79	436	NADH dehydrogenase [ubiqu	yes	no	0.768	0.564	0.424	2e-45
Q09644	426	NADH dehydrogenase [ubiqu	yes	no	0.625	0.469	0.4	2e-37

>sp|Q54S83|NDUF7_DICDI NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Dictyostelium discoideum GN=midA PE=1 SV=1

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/285 (41%), Positives = 170/285 (59%), Gaps = 23/285 (8%)

Query: 32  FSSSSSSESQIPNSHSVEPLDDNRSEHASTA--------ISIDRSGLYNPPEHSHERKLE 83
           F ++S S +   N + ++   D   EH   A        +S D+SGL   P+   + +  
Sbjct: 28  FINNSLSYTTTSNENDIK---DKNEEHDHRAKGKGRELLLSFDKSGLAQFPKQVFKNRKY 84

Query: 84  --SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
             ++  K+L+ I K RG P+S+  +++EVLTNPK G+Y+N+DVFG  GDFIT+PEVSQ+F
Sbjct: 85  PITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLF 143

Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201
           GEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR    FK F +S+ +HLVE SP
Sbjct: 144 GEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASP 203

Query: 202 TLQKLQHHNLKCMDENNANDNVEERTISSLA-GTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             +K Q  NL    +     N + +TI     G  V+W   LE+VP+  PT+ +A EF+D
Sbjct: 204 ANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTWVGKLEEVPTDIPTLFLAQEFFD 261

Query: 261 ALPVH--QFQKTTRGWCEKLVDIAEDSSLHQQ--LSFCCSAASGL 301
           ALP+H  +F +    WCE LVD  ED + H +  L F  S    L
Sbjct: 262 ALPIHVFRFSREKNDWCEVLVD--EDITEHGEYYLRFVQSKGPTL 304

Involved in mitochondrial function. Cells lacking midA have lower levels of ATP and no glycogen.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9VGR2|NDUF7_DROME NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 145/231 (62%), Gaps = 15/231 (6%)

Query: 72  NPPEHSHERKLESE-----LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
            PP+   E   ++E     L K L+  I    GPI VAEYM EVLTNP+AG+Y+NRDVFG
Sbjct: 33  EPPKEQPEASSKAESGHGSLAKQLRAKI-LSTGPIPVAEYMREVLTNPQAGYYMNRDVFG 91

Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
            EGDFITSPE+SQ+FGE+VG+W +  W +MG P+   LVELGPGRGTL  D+L+  +KFK
Sbjct: 92  REGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFK 151

Query: 187 NFTESLHIHLVECSPTLQKLQHHNL----KCMDENNANDNVEERTISSLAGTPVSWHAAL 242
              E   +H+VE SP L K Q        + + E+    + +E T +S  GT   WH  L
Sbjct: 152 QDAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWHRRL 208

Query: 243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSF 293
           E VP GF ++++AHEF+DALPVH+ Q     W E L+D+A  S   Q+ SF
Sbjct: 209 EDVPQGF-SLVLAHEFFDALPVHKLQLVDGKWQEVLIDVA-SSDGAQEASF 257

Drosophila melanogaster (taxid: 7227)

>sp|Q08BY0|NDUF7_DANRE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Danio rerio GN=ndufaf7 PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 135/206 (65%), Gaps = 11/206 (5%)

Query: 82  LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
           +   ++KHL   I    GPISVAEYM E LTNP  G+Y+  D+ GA GDFITSPE+SQ+F
Sbjct: 26  INKSILKHLASKI-IATGPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIF 84

Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT--ESLHIHLVEC 199
           GE++GVW +  W   G+ + + LVELGPGRG+L +D+LR  S+ K       + IHLVE 
Sbjct: 85  GELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEV 144

Query: 200 SPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVA 255
           SP L ++Q    +C+  N      N++   R+ ++  G P+ W+ ++E VP GF +I +A
Sbjct: 145 SPKLSQVQA---ECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWYHSIEDVPRGF-SIFLA 200

Query: 256 HEFYDALPVHQFQKTTRGWCEKLVDI 281
           HEF+DALP+H+FQ+T  GW E LVDI
Sbjct: 201 HEFFDALPIHKFQRTENGWREVLVDI 226

Danio rerio (taxid: 7955)

>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 146/238 (61%), Gaps = 12/238 (5%)

Query: 75  EHSHERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFIT 133
           E   +R   + L+ HL  I K +  GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+T
Sbjct: 35  EKPQKRTSANALLNHL--IFKIKSTGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVT 92

Query: 134 SPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES-- 191
           SPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F    +S  
Sbjct: 93  SPEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCD 152

Query: 192 LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSG 248
           + +HLVE SP L  +Q   L  K ++ E ++N  V +  I+   G PV W+  ++ VP+G
Sbjct: 153 ISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWYQDIQDVPNG 211

Query: 249 FPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNW 306
           + +  +AHEF+DALP+H+ QK   GW E L+DI  D  L  +L F   +   L  K +
Sbjct: 212 Y-SFYIAHEFFDALPIHKLQKIKDGWREMLIDI--DPKLPDKLRFVLGSNMSLVAKTF 266

Xenopus laevis (taxid: 8355)

>sp|Q2KHV5|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos taurus GN=NDUFAF7 PE=2 SV=2

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 13/247 (5%)

Query: 67  RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
           R   ++      E    + +++HL   IK   GPI+VAEYM+EVLTNP  G+Y+NRD+ G
Sbjct: 24  RGKYFSSGNEPAENNTVTPMLRHLIYKIK-STGPITVAEYMKEVLTNPAKGYYMNRDMLG 82

Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
            EGDFITSPE+SQMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  
Sbjct: 83  EEGDFITSPEISQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLG 142

Query: 187 NFTESLHI--HLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
           +  ++  I  HLVE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+  
Sbjct: 143 SLLKNCDISLHLVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRD 201

Query: 242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFC---CSAA 298
           L+ VP  + +  +AHEF+D LPVH+FQKT  GW E LVDI  D  +  +L F    C+  
Sbjct: 202 LQDVPKEY-SFYLAHEFFDVLPVHKFQKTPHGWREVLVDI--DPQVSDKLRFVLAPCATP 258

Query: 299 SGLQIKN 305
           +G  I+N
Sbjct: 259 AGAFIQN 265

Bos taurus (taxid: 9913)

>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 137/214 (64%), Gaps = 10/214 (4%)

Query: 86  LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMV 145
           L+ HL   IK   GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+TSPE+SQ+FGE++
Sbjct: 43  LLNHLIFKIK-STGPITVSEYMREVLTNPVKGYYMHHDMLGEHGDFVTSPELSQIFGELL 101

Query: 146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTL 203
           GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F     S  + +HLVE SP L
Sbjct: 102 GVWCISEWMSAGKPKSLQLVELGPGRGTLTDDLLRVFSNFGRLLNSCDISVHLVEVSPKL 161

Query: 204 QKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             +Q   L  K ++ E + N  V ++ I+   G PV W+  ++ VP+GF +  +AHEF+D
Sbjct: 162 SDIQAQRLTGKAIEVELDKNSPVYKKGITK-TGFPVCWYQDIQDVPTGF-SFYIAHEFFD 219

Query: 261 ALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFC 294
           ALP+H+ QKT  GW E L+DI  D  +  +L F 
Sbjct: 220 ALPIHKLQKTKDGWREILIDI--DPGIPDKLRFV 251

Xenopus tropicalis (taxid: 8364)

>sp|Q9CWG8|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus musculus GN=Ndufaf7 PE=2 SV=4

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 152/248 (61%), Gaps = 10/248 (4%)

Query: 67  RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
           R   Y+      E    + +++HL   IK   GPI+VAEYM+EVLTNP  G+Y+++D+ G
Sbjct: 19  RGKCYSSGNEPAESNQVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVHQDMLG 77

Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
            +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD+LR  S+  
Sbjct: 78  EKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLG 137

Query: 187 NF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
           +   T ++ IHLVE S  L ++Q   L   K   E +A   V  + ++  +G PVSW+  
Sbjct: 138 SVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPVSWYRD 196

Query: 242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS--LHQQLSFCCSAAS 299
           L+ VP G+ ++ +AHEF+D LPVH+FQKT RGW E  VD+   +S  L   L+ C + A 
Sbjct: 197 LKDVPEGY-SLYLAHEFFDVLPVHKFQKTPRGWREVFVDVDPQASDKLRFVLAPCATPAE 255

Query: 300 GLQIKNWR 307
               ++ R
Sbjct: 256 AFIQRDER 263

Mus musculus (taxid: 10090)

>sp|Q7L592|NDUF7_HUMAN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 10/221 (4%)

Query: 84  SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGE 143
           + +++HL   IK   GPI+VAEYM+EVLTNP  G+Y+ RD+ G +GDFITSPE+SQ+FGE
Sbjct: 41  TPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGE 99

Query: 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSP 201
           ++G+W +  W   G+     LVELGPGRGTL+ D+LR  ++  +  ++  + +HLVE S 
Sbjct: 100 LLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQ 159

Query: 202 TLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEF 258
            L ++Q   L   K   E NA   V  + ++  +G P+SW+  L  VP G+ +  +AHEF
Sbjct: 160 KLSEIQALTLTKEKVPLERNAGSPVYMKGVTK-SGIPISWYRDLHDVPKGY-SFYLAHEF 217

Query: 259 YDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAAS 299
           +D LPVH+FQKT +GW E  VDI  D  +  +L F  + ++
Sbjct: 218 FDVLPVHKFQKTPQGWREVFVDI--DPQVSDKLRFVLAPSA 256

Homo sapiens (taxid: 9606)

>sp|Q5XI79|NDUF7_RAT NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Rattus norvegicus GN=Ndufaf7 PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 11/257 (4%)

Query: 59  ASTAI-SIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAG 117
           A T I SI R   ++      E    + +++HL   IK   GPI+VAEYM+EVLTNP  G
Sbjct: 10  ARTGIPSIWRRKCFSSGNEPAESNHVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKG 68

Query: 118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
           +Y++ D+ G +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD
Sbjct: 69  YYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTAD 128

Query: 178 LLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLA 232
           +LR  S+  +   T  + IHLVE S  L ++Q   L       E +A   V  + ++  +
Sbjct: 129 ILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-S 187

Query: 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS--SLHQQ 290
           G P+SW+  L+ VP+G+ +  +AHEF+D LPVH+FQKT  GW E  VDI   S   L   
Sbjct: 188 GIPISWYRDLKDVPTGY-SFYLAHEFFDVLPVHKFQKTPHGWREVFVDIDPQSPDKLRFV 246

Query: 291 LSFCCSAASGLQIKNWR 307
           L+ C + A     ++ R
Sbjct: 247 LAPCATPAEAFIQRDER 263

Rattus norvegicus (taxid: 10116)

>sp|Q09644|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 120/210 (57%), Gaps = 10/210 (4%)

Query: 85  ELVKHLKGII--KFR-GGPISVAEYMEEVLTNPKAGFY----INRDVFGAEGDFITSPEV 137
           E   HLK  +  K R  GPI+VAEYM+  ++ P  G+Y     ++ VFGA+GDFITSPE+
Sbjct: 30  EKTNHLKKFLVDKIRVSGPITVAEYMKTCVSAPLVGYYGQFSKDQKVFGAKGDFITSPEL 89

Query: 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLV 197
           +Q+FGEM+GVW        G      LVELGPGR  LM D+L   +KF +  + + +HLV
Sbjct: 90  TQLFGEMIGVWVFHELANTGHKGSWQLVELGPGRAQLMNDVLNALAKFND--KDVSVHLV 147

Query: 198 ECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHE 257
           E S  L   Q  +L      N+ D    R   +  G  + W+ +++ +P GF T+ + +E
Sbjct: 148 ETSDALIDEQEKSLCIYTSKNSIDTPFIRKNKTRTGVNIYWYKSIDDIPDGF-TVFIGNE 206

Query: 258 FYDALPVHQFQKTTRGWCEKLVDIAEDSSL 287
           F DALP+HQF K+   W E  V++ +D  L
Sbjct: 207 FLDALPIHQFHKSGDSWNEVYVNLTKDGDL 236

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
255552842	490	conserved hypothetical protein [Ricinus	0.784	0.512	0.801	1e-119
225452686	483	PREDICTED: protein midA, mitochondrial [	0.778	0.515	0.808	1e-118
357473955	449	MidA-like protein [Medicago truncatula]	0.759	0.541	0.786	1e-114
217074438	449	unknown [Medicago truncatula]	0.759	0.541	0.781	1e-114
449505855	493	PREDICTED: protein midA, mitochondrial-l	0.787	0.511	0.75	1e-112
449461913	493	PREDICTED: protein midA, mitochondrial-l	0.787	0.511	0.75	1e-112
356538547	464	PREDICTED: protein midA, mitochondrial-l	0.728	0.502	0.819	1e-112
297815160	471	hypothetical protein ARALYDRAFT_905140 [	0.725	0.492	0.792	1e-111
42565270	471	uncharacterized protein [Arabidopsis tha	0.725	0.492	0.792	1e-110
334185683	471	uncharacterized protein [Arabidopsis tha	0.725	0.492	0.792	1e-110

>gi|255552842|ref|XP_002517464.1| conserved hypothetical protein [Ricinus communis] gi|223543475|gb|EEF45006.1| conserved hypothetical protein [Ricinus communis]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/252 (80%), Positives = 227/252 (90%), Gaps = 1/252 (0%)

Query: 41  QIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGP 100
           +IP+S+ VE L+DN  + +ST +S+DRSGLYNPPEHSHE   ESEL KHLKGIIKFRGGP
Sbjct: 49  EIPHSNLVEQLEDNNVQ-SSTTVSVDRSGLYNPPEHSHEPNSESELFKHLKGIIKFRGGP 107

Query: 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPN 160
           I+VAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWA+CLWEQM QP 
Sbjct: 108 ITVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWALCLWEQMEQPK 167

Query: 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAN 220
            VNLVELGPGRGTLMADLLRGASKFK+FTESLHIH+VECSP LQKLQHHNLKC+D+NN+ 
Sbjct: 168 SVNLVELGPGRGTLMADLLRGASKFKSFTESLHIHMVECSPALQKLQHHNLKCVDDNNSC 227

Query: 221 DNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVD 280
            + EERTIS+LAGTP+SWH +LEQVP+G PTII+AHEFYDALPVHQFQ+ +RGWCEK+VD
Sbjct: 228 GSGEERTISTLAGTPISWHTSLEQVPTGSPTIIIAHEFYDALPVHQFQRASRGWCEKMVD 287

Query: 281 IAEDSSLHQQLS 292
           +AEDS     LS
Sbjct: 288 VAEDSMFRFVLS 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452686|ref|XP_002276826.1| PREDICTED: protein midA, mitochondrial [Vitis vinifera] gi|296087782|emb|CBI35038.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/250 (80%), Positives = 222/250 (88%), Gaps = 1/250 (0%)

Query: 43  PNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPIS 102
           P   S+E LDD  S+ A++ ISIDRS LYNPPEHSHE   +SELVKHLKGIIKFRGGPIS
Sbjct: 44  PPITSLEHLDDGPSQ-ATSKISIDRSALYNPPEHSHEHSSDSELVKHLKGIIKFRGGPIS 102

Query: 103 VAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV 162
           VAEYMEEVLTNPKAGFYINRDVFG EGDFITSPEVSQMFGEM+GVW MCLWEQMGQP++V
Sbjct: 103 VAEYMEEVLTNPKAGFYINRDVFGTEGDFITSPEVSQMFGEMIGVWVMCLWEQMGQPSKV 162

Query: 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN 222
           NLVELGPGRGTLMADLLRG SKFKNF ESL IH+VECSPTLQKLQH NLKC+DE++ N N
Sbjct: 163 NLVELGPGRGTLMADLLRGTSKFKNFIESLQIHMVECSPTLQKLQHKNLKCVDEDSHNGN 222

Query: 223 VEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA 282
           V++RTIS L GTPVSWHAALEQVPSG PTII+AHEFYDALPVHQFQ+ +RGWCEK++D+A
Sbjct: 223 VDKRTISMLTGTPVSWHAALEQVPSGLPTIIIAHEFYDALPVHQFQRASRGWCEKMIDVA 282

Query: 283 EDSSLHQQLS 292
           EDSS    LS
Sbjct: 283 EDSSFRFVLS 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473955|ref|XP_003607262.1| MidA-like protein [Medicago truncatula] gi|355508317|gb|AES89459.1| MidA-like protein [Medicago truncatula]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/243 (78%), Positives = 215/243 (88%)

Query: 50  PLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEE 109
           P+      ++S+ ISIDRS L+NPPEHSH+   +SELVKHLKGIIKFRGGPIS+ EYM E
Sbjct: 16  PITAASCHYSSSTISIDRSSLHNPPEHSHQPISDSELVKHLKGIIKFRGGPISLGEYMSE 75

Query: 110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGP 169
           VLTNPKAG+YINRDVFGA+GDFITSPEVSQMFGEMVGVW MCLWEQMG+P RVNLVELGP
Sbjct: 76  VLTNPKAGYYINRDVFGAQGDFITSPEVSQMFGEMVGVWVMCLWEQMGRPERVNLVELGP 135

Query: 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTIS 229
           GRGTLMADLLRGASKFKNFTESLH+HLVECSP L+ LQH NLKC+DE NA+ + ++RT+S
Sbjct: 136 GRGTLMADLLRGASKFKNFTESLHVHLVECSPALKTLQHKNLKCVDEENADGDTDKRTVS 195

Query: 230 SLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQ 289
           S  GTPVSWHA LEQVPSG PTII+AHEF+DALPVHQFQK +RGWCEK+VD+AEDSSLH 
Sbjct: 196 SFVGTPVSWHATLEQVPSGSPTIIIAHEFFDALPVHQFQKGSRGWCEKMVDVAEDSSLHF 255

Query: 290 QLS 292
            LS
Sbjct: 256 VLS 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074438|gb|ACJ85579.1| unknown [Medicago truncatula]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 190/243 (78%), Positives = 215/243 (88%)

Query: 50  PLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEE 109
           P+      ++S+ ISIDRS L+NPPEHSH+   +SELVKHLKGIIKFRGGPIS+ EYM E
Sbjct: 16  PITAASCHYSSSTISIDRSSLHNPPEHSHQPISDSELVKHLKGIIKFRGGPISLGEYMSE 75

Query: 110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGP 169
           VLTNPKAG+YINRD+FGA+GDFITSPEVSQMFGEMVGVW MCLWEQMG+P RVNLVELGP
Sbjct: 76  VLTNPKAGYYINRDIFGAQGDFITSPEVSQMFGEMVGVWVMCLWEQMGRPERVNLVELGP 135

Query: 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTIS 229
           GRGTLMADLLRGASKFKNFTESLH+HLVECSP L+ LQH NLKC+DE NA+ + ++RT+S
Sbjct: 136 GRGTLMADLLRGASKFKNFTESLHVHLVECSPALKTLQHKNLKCVDEENADGDTDKRTVS 195

Query: 230 SLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQ 289
           S  GTPVSWHA LEQVPSG PTII+AHEF+DALPVHQFQK +RGWCEK+VD+AEDSSLH 
Sbjct: 196 SFVGTPVSWHATLEQVPSGSPTIIIAHEFFDALPVHQFQKGSRGWCEKMVDVAEDSSLHF 255

Query: 290 QLS 292
            LS
Sbjct: 256 VLS 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505855|ref|XP_004162586.1| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/260 (75%), Positives = 217/260 (83%), Gaps = 8/260 (3%)

Query: 41  QIPNSHSVEPLDDN--------RSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKG 92
           QIP    V+ L++          SE +++ ISIDRSGL NPPEHSHE   ++ELVKHLKG
Sbjct: 43  QIPEGTVVQHLENEDLLNQRPFSSEPSTSTISIDRSGLCNPPEHSHEPSSDTELVKHLKG 102

Query: 93  IIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152
           IIKFRGGPIS+AEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL
Sbjct: 103 IIKFRGGPISIAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 162

Query: 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212
           WEQMG+P +VNLVELGPGRGTLMADLLRGASK KNFT SLH+H VECSP LQKLQH  LK
Sbjct: 163 WEQMGRPEKVNLVELGPGRGTLMADLLRGASKLKNFTNSLHVHFVECSPALQKLQHSTLK 222

Query: 213 CMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272
           C DE N  D VE+ ++S+LAGTPVSWH  LEQVPSG PTII+AHEFYDALPVHQFQ+ +R
Sbjct: 223 CRDEANKADGVEKSSVSTLAGTPVSWHPTLEQVPSGLPTIIIAHEFYDALPVHQFQRASR 282

Query: 273 GWCEKLVDIAEDSSLHQQLS 292
           GW EK+VD+AEDS+    LS
Sbjct: 283 GWSEKMVDVAEDSTFKFVLS 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461913|ref|XP_004148686.1| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/260 (75%), Positives = 217/260 (83%), Gaps = 8/260 (3%)

Query: 41  QIPNSHSVEPLDDN--------RSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKG 92
           QIP    V+ L++          SE +++ ISIDRSGL NPPEHSHE   ++ELVKHLKG
Sbjct: 43  QIPEGTVVQHLENEDLLNQRSFSSEPSTSTISIDRSGLCNPPEHSHEPSSDTELVKHLKG 102

Query: 93  IIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152
           IIKFRGGPIS+AEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL
Sbjct: 103 IIKFRGGPISIAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 162

Query: 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212
           WEQMG+P +VNLVELGPGRGTLMADLLRGASK KNFT SLH+H VECSP LQKLQH  LK
Sbjct: 163 WEQMGRPEKVNLVELGPGRGTLMADLLRGASKLKNFTNSLHVHFVECSPALQKLQHSTLK 222

Query: 213 CMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272
           C DE N  D VE+ ++S+LAGTPVSWH  LEQVPSG PTII+AHEFYDALPVHQFQ+ +R
Sbjct: 223 CRDEANKADGVEKSSVSTLAGTPVSWHPTLEQVPSGLPTIIIAHEFYDALPVHQFQRASR 282

Query: 273 GWCEKLVDIAEDSSLHQQLS 292
           GW EK+VD+AEDS+    LS
Sbjct: 283 GWSEKMVDVAEDSTFKFVLS 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538547|ref|XP_003537764.1| PREDICTED: protein midA, mitochondrial-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/233 (81%), Positives = 204/233 (87%)

Query: 60  STAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFY 119
           +  ISIDRS LYNPPEHSH    +SELVKHLKGIIKFRGGPIS+ EYM EVLTNPKAG+Y
Sbjct: 41  AATISIDRSSLYNPPEHSHHPTSDSELVKHLKGIIKFRGGPISLGEYMSEVLTNPKAGYY 100

Query: 120 INRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLL 179
           INRDVFGAEGDFITSPEVSQMFGEMVGVW MCLWEQMGQP  VNLVELGPGRGTLMADLL
Sbjct: 101 INRDVFGAEGDFITSPEVSQMFGEMVGVWVMCLWEQMGQPQGVNLVELGPGRGTLMADLL 160

Query: 180 RGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH 239
           RGASKFKNF ESLH+HLVECSP LQKLQH NLKC DE NA+ + + RT  SL GTPVSWH
Sbjct: 161 RGASKFKNFIESLHVHLVECSPALQKLQHQNLKCTDEENASQDTDTRTARSLFGTPVSWH 220

Query: 240 AALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
           A LEQVPSG PTII+AHEF+DALPVHQFQK +RGWCEK+VD+AEDSS H  LS
Sbjct: 221 ATLEQVPSGSPTIIIAHEFFDALPVHQFQKASRGWCEKMVDVAEDSSFHFVLS 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815160|ref|XP_002875463.1| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata] gi|297321301|gb|EFH51722.1| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 209/236 (88%), Gaps = 4/236 (1%)

Query: 57  EHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKA 116
           EH  T IS+DRS LY PP+HSHE   E+ELVKHLK IIKFRGGPISVAEYMEEVLTNPKA
Sbjct: 49  EHPGTTISVDRSSLYTPPDHSHESTPETELVKHLKSIIKFRGGPISVAEYMEEVLTNPKA 108

Query: 117 GFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176
           GFY+NRDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMA
Sbjct: 109 GFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMA 168

Query: 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236
           DLLRG SKF+NFTESLHIHLVECSP LQKLQH NLKC+DE+    ++E++ ISSLAGTPV
Sbjct: 169 DLLRGTSKFRNFTESLHIHLVECSPALQKLQHQNLKCIDES----SLEKKVISSLAGTPV 224

Query: 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
            WHA LE+VPSG PT+I+AHEFYDALPVHQFQK++RGWCEK+VD+ EDS  H  LS
Sbjct: 225 HWHATLEEVPSGVPTLIIAHEFYDALPVHQFQKSSRGWCEKMVDVGEDSKFHFVLS 280

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565270|ref|NP_189511.2| uncharacterized protein [Arabidopsis thaliana] gi|95147286|gb|ABF57278.1| At3g28700 [Arabidopsis thaliana] gi|332643957|gb|AEE77478.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 207/236 (87%), Gaps = 4/236 (1%)

Query: 57  EHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKA 116
           EH  T ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKA
Sbjct: 49  EHPGTTISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKA 108

Query: 117 GFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176
           GFY+NRDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMA
Sbjct: 109 GFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMA 168

Query: 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236
           DLLRG SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV
Sbjct: 169 DLLRGTSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPV 224

Query: 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
            WHA L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS     LS
Sbjct: 225 HWHATLQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDSKFRFVLS 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185683|ref|NP_001189995.1| uncharacterized protein [Arabidopsis thaliana] gi|332643958|gb|AEE77479.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 207/236 (87%), Gaps = 4/236 (1%)

Query: 57  EHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKA 116
           EH  T ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKA
Sbjct: 49  EHPGTTISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKA 108

Query: 117 GFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176
           GFY+NRDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMA
Sbjct: 109 GFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMA 168

Query: 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236
           DLLRG SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV
Sbjct: 169 DLLRGTSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPV 224

Query: 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
            WHA L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS     LS
Sbjct: 225 HWHATLQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDSKFRFVLS 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2095527	471	AT3G28700 [Arabidopsis thalian	0.868	0.590	0.694	1.4e-103
DICTYBASE|DDB_G0282615	484	midA "DUF185 family protein" [	0.690	0.456	0.467	1.7e-52
FB|FBgn0037880	437	CG17726 [Drosophila melanogast	0.671	0.491	0.486	3.2e-49
UNIPROTKB|Q6GQ37	437	ndufaf7 "NADH dehydrogenase [u	0.706	0.517	0.436	1.4e-46
UNIPROTKB|Q2KHV5	441	NDUFAF7 "NADH dehydrogenase [u	0.690	0.501	0.449	3.8e-46
RGD|1311578	436	Ndufaf7 "NADH dehydrogenase (u	0.740	0.543	0.431	4.7e-46
ZFIN|ZDB-GENE-060929-628	422	zgc:153989 "zgc:153989" [Danio	0.609	0.462	0.475	6.2e-46
UNIPROTKB|Q5BKM6	430	ndufaf7 "NADH dehydrogenase [u	0.712	0.530	0.439	1e-45
UNIPROTKB|F1MJQ5	441	C11H2orf56 "Uncharacterized pr	0.690	0.501	0.444	2.7e-45
MGI|MGI:1920944	436	Ndufaf7 "NADH dehydrogenase (u	0.715	0.525	0.443	5.6e-45

TAIR|locus:2095527 AT3G28700 [Arabidopsis thaliana (taxid:3702)]

 Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
 Identities = 202/291 (69%), Positives = 226/291 (77%)

Query:     3 LRKLSLQPSSPLRVLSSKYPFPLLQKWXXXXXXXXXXXXXXXXXXVEPLDDNRS-EHAST 61
             LRKL  Q SS  R+L S  P PL  K                     P  ++ + EH  T
Sbjct:     2 LRKLLTQTSSR-RLLFSGVP-PLFSK------STISPFSSLSSSPEPPSSESPAVEHPGT 53

Query:    62 AISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN 121
              ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKAGFY+N
Sbjct:    54 TISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKAGFYMN 113

Query:   122 RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRG 181
             RDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMADLLRG
Sbjct:   114 RDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMADLLRG 173

Query:   182 ASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241
              SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV WHA 
Sbjct:   174 TSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPVHWHAT 229

Query:   242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
             L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS     LS
Sbjct:   230 LQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDSKFRFVLS 280

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IDA

GO:0015979 "photosynthesis" evidence=RCA

GO:0045333 "cellular respiration" evidence=RCA

DICTYBASE|DDB_G0282615 midA "DUF185 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 108/231 (46%), Positives = 152/231 (65%)

Query:    63 ISIDRSGLYNPPEHSHE-RKLE-SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI 120
             +S D+SGL   P+   + RK   ++  K+L+ I K RG P+S+  +++EVLTNPK G+Y+
Sbjct:    64 LSFDKSGLAQFPKQVFKNRKYPITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYM 122

Query:   121 NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLR 180
             N+DVFG  GDFIT+PEVSQ+FGEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR
Sbjct:   123 NKDVFGKGGDFITAPEVSQLFGEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILR 182

Query:   181 GASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA-GTPVSWH 239
                 FK F +S+ +HLVE SP  +K Q  NL    +   N   + +TI     G  V+W 
Sbjct:   183 STKVFKEFYDSISVHLVEASPANKKTQKQNLLYFKDKAIN--FDHKTIGETPNGIKVTWV 240

Query:   240 AALEQVPSGFPTIIVAHEFYDALPVH--QFQKTTRGWCEKLVDIAEDSSLH 288
               LE+VP+  PT+ +A EF+DALP+H  +F +    WCE LVD  ED + H
Sbjct:   241 GKLEEVPTDIPTLFLAQEFFDALPIHVFRFSREKNDWCEVLVD--EDITEH 289

GO:0043052 "thermotaxis" evidence=IMP

GO:0042331 "phototaxis" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0006907 "pinocytosis" evidence=IMP

GO:0006536 "glutamate metabolic process" evidence=IMP

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0090141 "positive regulation of mitochondrial fission" evidence=IMP

FB|FBgn0037880 CG17726 [Drosophila melanogaster (taxid:7227)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 112/230 (48%), Positives = 144/230 (62%)

Query:    73 PPEHSHER--KLES---ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGA 127
             PP+   E   K ES    L K L+  I    GPI VAEYM EVLTNP+AG+Y+NRDVFG 
Sbjct:    34 PPKEQPEASSKAESGHGSLAKQLRAKI-LSTGPIPVAEYMREVLTNPQAGYYMNRDVFGR 92

Query:   128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN 187
             EGDFITSPE+SQ+FGE+VG+W +  W +MG P+   LVELGPGRGTL  D+L+  +KFK 
Sbjct:    93 EGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFKQ 152

Query:   188 FTESLHIHLVECSPTLQKLQHHNL----KCMDENNANDNVEERTISSLAGTPVSWHAALE 243
               E   +H+VE SP L K Q        + + E+    + +E T +S  GT   WH  LE
Sbjct:   153 DAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWHRRLE 209

Query:   244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSF 293
              VP GF ++++AHEF+DALPVH+ Q     W E L+D+A      Q+ SF
Sbjct:   210 DVPQGF-SLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSDGA-QEASF 257

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q6GQ37 ndufaf7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Xenopus laevis (taxid:8355)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 104/238 (43%), Positives = 146/238 (61%)

Query:    75 EHSHERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFIT 133
             E   +R   + L+ HL  I K +  GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+T
Sbjct:    35 EKPQKRTSANALLNHL--IFKIKSTGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVT 92

Query:   134 SPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES-- 191
             SPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F    +S  
Sbjct:    93 SPEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCD 152

Query:   192 LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSG 248
             + +HLVE SP L  +Q   L  K ++ E ++N  V +  I+   G PV W+  ++ VP+G
Sbjct:   153 ISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWYQDIQDVPNG 211

Query:   249 FPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQIKNW 306
             + +  +AHEF+DALP+H+ QK   GW E L+DI  D  L  +L F   +   L  K +
Sbjct:   212 Y-SFYIAHEFFDALPIHKLQKIKDGWREMLIDI--DPKLPDKLRFVLGSNMSLVAKTF 266

GO:0005739 "mitochondrion" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|Q2KHV5 NDUFAF7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Bos taurus (taxid:9913)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 106/236 (44%), Positives = 149/236 (63%)

Query:    79 ERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEV 137
             E    + +++HL  I K +  GPI+VAEYM+EVLTNP  G+Y+NRD+ G EGDFITSPE+
Sbjct:    36 ENNTVTPMLRHL--IYKIKSTGPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEI 93

Query:   138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIH 195
             SQMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  +  ++  + +H
Sbjct:    94 SQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLH 153

Query:   196 LVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTI 252
             LVE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+  L+ VP  + + 
Sbjct:   154 LVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRDLQDVPKEY-SF 211

Query:   253 IVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFC---CSAASGLQIKN 305
              +AHEF+D LPVH+FQKT  GW E LVDI  D  +  +L F    C+  +G  I+N
Sbjct:   212 YLAHEFFDVLPVHKFQKTPHGWREVLVDI--DPQVSDKLRFVLAPCATPAGAFIQN 265

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

RGD|1311578 Ndufaf7 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 7" [Rattus norvegicus (taxid:10116)]

 Score = 463 (168.0 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 107/248 (43%), Positives = 152/248 (61%)

Query:    59 ASTAI-SIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAG 117
             A T I SI R   ++      E    + +++HL   IK  G PI+VAEYM+EVLTNP  G
Sbjct:    10 ARTGIPSIWRRKCFSSGNEPAESNHVTPMLRHLMYKIKSTG-PITVAEYMKEVLTNPAKG 68

Query:   118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
             +Y++ D+ G +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD
Sbjct:    69 YYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTAD 128

Query:   178 LLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLA 232
             +LR  S+  +  ++  + IHLVE S  L ++Q   L  + +  E +A   V  + ++  +
Sbjct:   129 ILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-S 187

Query:   233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS--SLHQQ 290
             G P+SW+  L+ VP+G+ +  +AHEF+D LPVH+FQKT  GW E  VDI   S   L   
Sbjct:   188 GIPISWYRDLKDVPTGY-SFYLAHEFFDVLPVHKFQKTPHGWREVFVDIDPQSPDKLRFV 246

Query:   291 LSFCCSAA 298
             L+ C + A
Sbjct:   247 LAPCATPA 254

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO;ISS

ZFIN|ZDB-GENE-060929-628 zgc:153989 "zgc:153989" [Danio rerio (taxid:7955)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 98/206 (47%), Positives = 137/206 (66%)

Query:    82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
             +   ++KHL   I    GPISVAEYM E LTNP  G+Y+  D+ GA GDFITSPE+SQ+F
Sbjct:    26 INKSILKHLASKI-IATGPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIF 84

Query:   142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT-ES-LHIHLVEC 199
             GE++GVW +  W   G+ + + LVELGPGRG+L +D+LR  S+ K    E+ + IHLVE 
Sbjct:    85 GELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEV 144

Query:   200 SPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVA 255
             SP L ++Q    +C+  N      N++   R+ ++  G P+ W+ ++E VP GF +I +A
Sbjct:   145 SPKLSQVQ---AECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWYHSIEDVPRGF-SIFLA 200

Query:   256 HEFYDALPVHQFQKTTRGWCEKLVDI 281
             HEF+DALP+H+FQ+T  GW E LVDI
Sbjct:   201 HEFFDALPIHKFQRTENGWREVLVDI 226

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|Q5BKM6 ndufaf7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 106/241 (43%), Positives = 145/241 (60%)

Query:    59 ASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAG 117
             AS    I R       +H       + L+ HL  I K +  GPI+V+EYM EVLTNP  G
Sbjct:    17 ASANCRIQRYQSSRTEKHQDSTSANA-LLNHL--IFKIKSTGPITVSEYMREVLTNPVKG 73

Query:   118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
             +Y++ D+ G  GDF+TSPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  D
Sbjct:    74 YYMHHDMLGEHGDFVTSPELSQIFGELLGVWCISEWMSAGKPKSLQLVELGPGRGTLTDD 133

Query:   178 LLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLA 232
             LLR  S F     S  + +HLVE SP L  +Q   L  K ++ E + N  V ++ I+   
Sbjct:   134 LLRVFSNFGRLLNSCDISVHLVEVSPKLSDIQAQRLTGKAIEVELDKNSPVYKKGITK-T 192

Query:   233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
             G PV W+  ++ VP+GF +  +AHEF+DALP+H+ QKT  GW E L+DI  D  +  +L 
Sbjct:   193 GFPVCWYQDIQDVPTGF-SFYIAHEFFDALPIHKLQKTKDGWREILIDI--DPGIPDKLR 249

Query:   293 F 293
             F
Sbjct:   250 F 250

GO:0005739 "mitochondrion" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|F1MJQ5 C11H2orf56 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 105/236 (44%), Positives = 148/236 (62%)

Query:    79 ERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEV 137
             E    + +++HL  I K +  GPI+VAEYM+EVLTNP  G+Y+NRD+ G EGDFITSPE+
Sbjct:    36 ENNTVTPMLRHL--IYKIKSTGPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEI 93

Query:   138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIH 195
             SQMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  +  ++  + +H
Sbjct:    94 SQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLH 153

Query:   196 LVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTI 252
             LVE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+  L+ VP  + + 
Sbjct:   154 LVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRDLQDVPKEY-SF 211

Query:   253 IVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFC---CSAASGLQIKN 305
              +AHEF+D LPVH+FQKT  GW E LVDI  D  +  +L F    C+  +   I+N
Sbjct:   212 YLAHEFFDVLPVHKFQKTPHGWREVLVDI--DPQVSDKLRFVLAPCATPAEAFIQN 265

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1920944 Ndufaf7 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7" [Mus musculus (taxid:10090)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 106/239 (44%), Positives = 149/239 (62%)

Query:    67 RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
             R   Y+      E    + +++HL   IK  G PI+VAEYM+EVLTNP  G+Y+++D+ G
Sbjct:    19 RGKCYSSGNEPAESNQVTPMLRHLMYKIKSTG-PITVAEYMKEVLTNPAKGYYVHQDMLG 77

Query:   127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
              +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD+LR  S+  
Sbjct:    78 EKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLG 137

Query:   187 NF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
             +   T ++ IHLVE S  L ++Q   L   K   E +A   V  + ++  +G PVSW+  
Sbjct:   138 SVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPVSWYRD 196

Query:   242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS--LHQQLSFCCSAA 298
             L+ VP G+ ++ +AHEF+D LPVH+FQKT RGW E  VD+   +S  L   L+ C + A
Sbjct:   197 LKDVPEGY-SLYLAHEFFDVLPVHKFQKTPRGWREVFVDVDPQASDKLRFVLAPCATPA 254

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
COG1565	370	COG1565, COG1565, Uncharacterized conserved protei	1e-55
pfam02636	241	pfam02636, Methyltransf_28, Putative S-adenosyl-L-	4e-42

>gnl|CDD|224481 COG1565, COG1565, Uncharacterized conserved protein [Function unknown]

 Score =  184 bits (470), Expect = 1e-55
 Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 19/183 (10%)

Query: 98  GGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG 157
           GGPIS +++ME  L +P+ G+Y +    G +GDFIT+PE+SQ+FGE++    + LW+++G
Sbjct: 15  GGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELG 74

Query: 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNLKCMDE 216
           +P  + LVE+G GRGTL +D+LR   + +    E+L  +++E SP L+  Q   LK    
Sbjct: 75  RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK---- 130

Query: 217 NNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCE 276
               D              + W   +E +P  FP I+V++E +DALPV QF +T   + E
Sbjct: 131 -ATED-------------LIRWVEWVEDLPKKFPGIVVSNELFDALPVEQFIRTKGLFVE 176

Query: 277 KLV 279
           ++V
Sbjct: 177 RVV 179

Length = 370

>gnl|CDD|217158 pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  145 bits (368), Expect = 4e-42
 Identities = 53/150 (35%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPT 202
           ++  W   LW+ +G P  + LVE+G GRGTL AD+LR   K    F E+L  HLVE SP 
Sbjct: 1   LLARWLAQLWQALGYPAPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPA 60

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L                  S     + W   L ++P  FP  I+A+E +DAL
Sbjct: 61  LRERQKERLA----------------GSAPSLAIRWLDELPELP--FPGFILANEVFDAL 102

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
           PV  F +   GW E+ V + ED      L 
Sbjct: 103 PVDLFVRDNGGWRERYVGLDEDGEFEFVLG 132

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. In eukaryotes it plays a role in mitochondrial complex I activity. Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
COG1565	370	Uncharacterized conserved protein [Function unknow	100.0
KOG2901	415	consensus Uncharacterized conserved protein [Funct	100.0
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	100.0
PHA03412	241	putative methyltransferase; Provisional	97.19
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.03
TIGR00740	239	methyltransferase, putative. A simple BLAST search	96.96
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	96.64
PLN02244	340	tocopherol O-methyltransferase	96.58
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.55
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.53
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.49
PRK06202	232	hypothetical protein; Provisional	96.43
TIGR03438	301	probable methyltransferase. This model represents	96.41
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.41
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.39
PHA03411	279	putative methyltransferase; Provisional	96.31
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.3
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.28
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.16
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	96.15
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.14
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.14
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.0
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	95.88
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	95.85
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	95.85
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.8
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.72
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	95.67
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	95.58
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.53
PRK08317	241	hypothetical protein; Provisional	95.4
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.39
PF13679	141	Methyltransf_32: Methyltransferase domain	95.38
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	95.34
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.33
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.27
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.25
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	95.19
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	95.17
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	95.01
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	95.01
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.88
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	94.83
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	94.82
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.8
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	94.77
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	94.74
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	94.71
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	94.7
PRK07402	196	precorrin-6B methylase; Provisional	94.69
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.67
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	94.67
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	94.6
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	94.57
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	94.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.53
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	94.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	94.51
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	94.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	94.45
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	94.45
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.44
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	94.4
PRK14967	223	putative methyltransferase; Provisional	94.31
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	94.29
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.2
PRK00811	283	spermidine synthase; Provisional	94.2
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	94.16
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	94.11
KOG2904	328	consensus Predicted methyltransferase [General fun	94.09
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	94.06
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	93.83
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	93.82
COG2890	280	HemK Methylase of polypeptide chain release factor	93.51
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	93.5
PRK05785	226	hypothetical protein; Provisional	93.46
PRK11207	197	tellurite resistance protein TehB; Provisional	93.43
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	93.36
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	93.31
PRK04457	262	spermidine synthase; Provisional	93.22
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	92.93
PLN02233	261	ubiquinone biosynthesis methyltransferase	92.86
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	92.68
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	92.64
COG4123	248	Predicted O-methyltransferase [General function pr	92.58
PLN02585	315	magnesium protoporphyrin IX methyltransferase	92.46
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	92.32
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	92.22
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	92.12
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	92.09
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	91.98
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	91.94
PRK14968	188	putative methyltransferase; Provisional	91.88
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	91.85
PLN02336	475	phosphoethanolamine N-methyltransferase	91.75
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	91.67
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	91.34
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	91.22
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	91.21
PRK04266	226	fibrillarin; Provisional	91.14
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	91.07
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	91.05
TIGR00438	188	rrmJ cell division protein FtsJ.	90.99
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	90.73
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	90.61
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	90.47
PLN02366	308	spermidine synthase	90.3
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	90.07
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	89.95
PRK12335	287	tellurite resistance protein TehB; Provisional	89.9
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	89.9
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	89.83
PLN02490	340	MPBQ/MSBQ methyltransferase	89.36
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	89.14
PRK01581	374	speE spermidine synthase; Validated	89.01
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	88.93
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	88.82
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	88.75
PRK06922	677	hypothetical protein; Provisional	88.74
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	88.65
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	88.59
TIGR00452	314	methyltransferase, putative. Known examples to dat	88.55
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	88.46
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	88.42
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	88.34
PLN02823	336	spermine synthase	87.89
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	87.57
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	87.55
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	87.51
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	87.48
PLN02336	475	phosphoethanolamine N-methyltransferase	87.07
PRK03612	521	spermidine synthase; Provisional	87.0
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	86.64
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	86.54
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	86.39
PRK04148	134	hypothetical protein; Provisional	86.14
PTZ00146	293	fibrillarin; Provisional	85.83
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	85.68
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	85.58
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	84.99
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	84.85
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	84.5
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	84.42
KOG4300	252	consensus Predicted methyltransferase [General fun	84.14
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	83.33
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	83.32
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	83.29
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	83.24
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	83.15
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	82.49
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	82.12
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	81.55
KOG2361	264	consensus Predicted methyltransferase [General fun	81.25
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	80.05

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2e-53  Score=411.65  Aligned_cols=186  Identities=37%  Similarity=0.695  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceE
Q 020840           85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL  164 (320)
Q Consensus        85 ~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~I  164 (320)
                      .+..+|++.|+.. |||||++||++|||+|++|||++..+||+.||||||||||++|||+||.|++++|++.|.|.++.|
T Consensus         3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l   81 (370)
T COG1565           3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL   81 (370)
T ss_pred             cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence            3566778888875 999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             EEecCCchhHHHHHHHHHh-cCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeecccc
Q 020840          165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE  243 (320)
Q Consensus       165 vEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~sle  243 (320)
                      ||||||+|+||.|||++++ ..|++|+.++|+|||+||.|+++||++|+...                  ..+.|...++
T Consensus        82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~------------------~~~~~~~~~e  143 (370)
T COG1565          82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE------------------DLIRWVEWVE  143 (370)
T ss_pred             EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc------------------cchhHHHHHH
Confidence            9999999999999999995 57999999999999999999999999998631                  3678888889


Q ss_pred             cCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEE
Q 020840          244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQ  289 (320)
Q Consensus       244 elp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~  289 (320)
                      ++|.+.++|||+|||||||||++|.+++++|+|++|.-+.++++.+
T Consensus       144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~  189 (370)
T COG1565         144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVF  189 (370)
T ss_pred             hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceee
Confidence            9999889999999999999999999999999999996445566655

>KOG2901 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.5e-49  Score=378.63  Aligned_cols=221  Identities=64%  Similarity=1.079  Sum_probs=200.9

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHH
Q 020840           73 PPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL  152 (320)
Q Consensus        73 ~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~  152 (320)
                      ||.++++  +...|+++|...|+.+ ||||+++||..+|.||.+|||++++.||++||||||||++|+|||+|++|...+
T Consensus        24 p~~~sp~--~t~~l~k~L~~ki~~s-gpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~e  100 (415)
T KOG2901|consen   24 PPDHSPE--ETPHLVKHLKSKIKST-GPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSE  100 (415)
T ss_pred             CCCCCcc--ccHHHHHHHHhhhhcc-CCccHHHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEe
Confidence            5556655  4455999999999998 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccC
Q 020840          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA  232 (320)
Q Consensus       153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~  232 (320)
                      |+++|.|..+++||+|||+||||.|+|+.+.++.+  ..++.|+||+||.|.+.|.++|++.+..+..    +.+..+..
T Consensus       101 w~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~~--~~vs~hLve~S~~ls~lq~~~l~~~~~~~s~----~~~~tt~s  174 (415)
T KOG2901|consen  101 WEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKD--EDLSVHLVEVSPALSKLQAQNLCCTDESLSE----YKKGSTLS  174 (415)
T ss_pred             hhhhCCccceeEEEeccchhHHHHHHHHHHHHhcC--ceeeEEEEEecHhHHHHhhcceeEeeccHHH----Hhhccccc
Confidence            99999999999999999999999999999977652  4578999999999999999999987665444    55556667


Q ss_pred             CCCeEeecccccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEEEeecCCCccchhHH
Q 020840          233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGLQI  303 (320)
Q Consensus       233 ~~~i~W~~sleelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~v~~p~~~~~~~~~~  303 (320)
                      +.++.|+.+++++|.++ ++|+|||||||||||+|++..++|+|++|++++++.|+|+++|.++|+...+.
T Consensus       175 g~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~s~tp~~~~~~  244 (415)
T KOG2901|consen  175 GTPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLM  244 (415)
T ss_pred             cCchhcccChhhcCCce-EEEEhHHhhhcCcchhhccCCCCcceeEEeccCcccEEEecCCCCChhhhcCC
Confidence            88999999999999995 99999999999999999999999999999999999999999999999877664

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=100.00  E-value=5.5e-35  Score=271.08  Aligned_cols=149  Identities=37%  Similarity=0.692  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHcCCCC-cceEEEecCCchhHHHHHHHHHhcC-cCcccceeEEEEecChhhHHHHHHhccccccCCcCc
Q 020840          144 MVGVWAMCLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND  221 (320)
Q Consensus       144 ~IA~~i~~~w~~~g~p~-~l~IvEiGaG~GtLa~DIL~~l~~~-p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~  221 (320)
                      |||+|++++|+++|.|. +++|||+|||+|+||.|||+++++. |+++++++|+|||+||.|+++|+++|.....+    
T Consensus         1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~----   76 (252)
T PF02636_consen    1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK----   76 (252)
T ss_dssp             HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH-------
T ss_pred             ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc----
Confidence            69999999999999986 5999999999999999999999875 99999999999999999999999999864321    


Q ss_pred             ccchhhhcccCCCCeEeecccccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEc--CCCceEEEeecCCCccc
Q 020840          222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA--EDSSLHQQLSFCCSAAS  299 (320)
Q Consensus       222 ~~~~~~~~~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~--~~g~f~~v~~p~~~~~~  299 (320)
                             ....+.+|.|+++++++|  .+|||||||||||||||+|++++++|+|++|+++  .+++|.|+..|.+++..
T Consensus        77 -------~~~~~~~i~w~~~l~~~p--~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~p~~~~~~  147 (252)
T PF02636_consen   77 -------DTEFGDPIRWLDDLEEVP--FPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLSPLSTPSL  147 (252)
T ss_dssp             -------STTTCGCEEEESSGGCS---CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEESSSSTCH
T ss_pred             -------ccccCCccchhhhhhccc--CCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeCCCCCHHH
Confidence                   122456899999888887  4899999999999999999999999999999997  46789999999988766


Q ss_pred             hhHHHh
Q 020840          300 GLQIKN  305 (320)
Q Consensus       300 ~~~~~~  305 (320)
                      ..++..
T Consensus       148 ~~~l~~  153 (252)
T PF02636_consen  148 EEYLPQ  153 (252)
T ss_dssp             CCCTTC
T ss_pred             HHHHHH
Confidence            555443

; PDB: 4F3N_A 1ZKD_B.

>PHA03412 putative methyltransferase; Provisional

Probab=97.19  E-value=0.0015  Score=61.60  Aligned_cols=69  Identities=23%  Similarity=0.203  Sum_probs=49.4

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       126 G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      .+.|.|+|+++|...+    +     +|. .+   ..+|+|+|||+|.|+..+.+.....+    ..+++.||+++...+
T Consensus        28 ~~~GqFfTP~~iAr~~----~-----i~~-~~---~grVLDlG~GSG~Lalala~~~~~~~----~~~V~aVEID~~Al~   90 (241)
T PHA03412         28 SELGAFFTPIGLARDF----T-----IDA-CT---SGSVVDLCAGIGGLSFAMVHMMMYAK----PREIVCVELNHTYYK   90 (241)
T ss_pred             ccCCccCCCHHHHHHH----H-----Hhc-cC---CCEEEEccChHHHHHHHHHHhcccCC----CcEEEEEECCHHHHH
Confidence            4679999999975543    1     121 12   24899999999999999877643222    247999999999887


Q ss_pred             HHHHhc
Q 020840          206 LQHHNL  211 (320)
Q Consensus       206 ~Q~e~L  211 (320)
                      .-++.+
T Consensus        91 ~Ar~n~   96 (241)
T PHA03412         91 LGKRIV   96 (241)
T ss_pred             HHHhhc
Confidence            666554

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.03  E-value=0.0072  Score=52.96  Aligned_cols=73  Identities=21%  Similarity=0.292  Sum_probs=48.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeecc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA  241 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~s  241 (320)
                      -+|+|+|||+|.++.-+...   .|    ..+++.+|+|+...+..++++....-+               ...+.+.+-
T Consensus        33 ~~vLDlG~G~G~i~~~la~~---~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~---------------~v~~~~~d~   90 (170)
T PF05175_consen   33 GRVLDLGCGSGVISLALAKR---GP----DAKVTAVDINPDALELAKRNAERNGLE---------------NVEVVQSDL   90 (170)
T ss_dssp             CEEEEETSTTSHHHHHHHHT---ST----CEEEEEEESBHHHHHHHHHHHHHTTCT---------------TEEEEESST
T ss_pred             CeEEEecCChHHHHHHHHHh---CC----CCEEEEEcCCHHHHHHHHHHHHhcCcc---------------ccccccccc
Confidence            48999999999999877653   22    346999999999998888777542110               023444444


Q ss_pred             cccCCCCCCEEEEEe
Q 020840          242 LEQVPSGFPTIIVAH  256 (320)
Q Consensus       242 leelp~~~~~~iiAN  256 (320)
                      ++.++.+..-+|++|
T Consensus        91 ~~~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   91 FEALPDGKFDLIVSN  105 (170)
T ss_dssp             TTTCCTTCEEEEEE-
T ss_pred             cccccccceeEEEEc
Confidence            455553334678887

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00740 methyltransferase, putative

Probab=96.96  E-value=0.0062  Score=55.81  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+|+|+|||+|.++..+++.+.. |    ..+++-||+|+.+.+.-++++..
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~-p----~~~v~gvD~s~~ml~~a~~~~~~  101 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQ-P----NVKIIGIDNSQPMVERCRQHIAA  101 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCC-C----CCeEEEEeCCHHHHHHHHHHHHh
Confidence            358999999999999888775421 2    35799999999998877776653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=96.64  E-value=0.02  Score=53.06  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+++.+. .|    ..+++.||+||.+.+.-++++.
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~-~~----~~~v~gvD~S~~ml~~A~~~~~  103 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIH-HD----NCKIIAIDNSPAMIERCRRHID  103 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHH
Confidence            35899999999999888766432 12    3479999999999987777664

>PLN02244 tocopherol O-methyltransferase

Probab=96.58  E-value=0.16  Score=49.65  Aligned_cols=63  Identities=14%  Similarity=0.030  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHcCC-----CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          141 FGEMVGVWAMCLWEQMGQ-----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       141 FGe~IA~~i~~~w~~~g~-----p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      +.++-.+.+..+.+..+.     ....+|+|+|||.|.++..+.+..        ..+++-||+|+.+.+.-+++.
T Consensus        94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--------g~~v~gvD~s~~~i~~a~~~~  161 (340)
T PLN02244         94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--------GANVKGITLSPVQAARANALA  161 (340)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHH
Confidence            334433444444444544     334689999999999988776532        236899999999877655544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.55  E-value=0.015  Score=54.45  Aligned_cols=43  Identities=26%  Similarity=0.494  Sum_probs=36.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||.|.|+..+++..         .+++.||+++.+.+..++++.
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~~---------~~v~~vEid~~~~~~l~~~~~   72 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKRA---------KKVYAIELDPRLAEFLRDDEI   72 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHhc
Confidence            3589999999999999987641         268999999999998887764

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.53  E-value=0.0055  Score=57.55  Aligned_cols=44  Identities=30%  Similarity=0.523  Sum_probs=37.5

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +...|+|+|||.|.|...+++..         -++++||+.+.+.+.-++++.
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---------~~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---------KRVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---------SEEEEEESSHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCccchhhHhccc---------CcceeecCcHhHHHHHHHHhh
Confidence            45699999999999999998865         258999999999988777665

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.49  E-value=0.028  Score=51.14  Aligned_cols=44  Identities=27%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .-+|+|+|||+|.++..+.+.+   |    ..+++-||+|+.+.+.-++++
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~   87 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYL   87 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhC
Confidence            3589999999999888876542   2    246999999999988776654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06202 hypothetical protein; Provisional

Probab=96.43  E-value=0.038  Score=50.44  Aligned_cols=49  Identities=24%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .+.+|+|+|||+|.++..+.+..++..   ...+++.||+|+.+.+.-+++.
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~  108 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANP  108 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhcc
Confidence            446899999999999988877665321   1247999999999988766654

>TIGR03438 probable methyltransferase

Probab=96.41  E-value=0.011  Score=56.82  Aligned_cols=45  Identities=24%  Similarity=0.239  Sum_probs=36.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|+.+.-+++.+..      ..+|+-||+|+.+-+.-+++|.
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~  109 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALA  109 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHH
Confidence            58999999999999999988643      2469999999998655555553

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.41  E-value=0.028  Score=51.82  Aligned_cols=51  Identities=22%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             HHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..++.....+|+|+|||+|.++..+.+..   |    ..+++-||+|+.+.+.-++++
T Consensus        25 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~----~~~v~gvD~s~~~i~~a~~~~   75 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGPGNSTELLVERW---P----AARITGIDSSPAMLAEARSRL   75 (258)
T ss_pred             hhCCCcCCCEEEEEcccCCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHhC
Confidence            33444445699999999999988776542   2    247999999999887666654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.39  E-value=0.0087  Score=52.16  Aligned_cols=48  Identities=23%  Similarity=0.456  Sum_probs=37.5

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+....-+|+|+|||.|.++..+++.         ..+++.||+++.+.+.-++++.
T Consensus         9 ~~~~~~~~vLEiG~G~G~lt~~l~~~---------~~~v~~vE~~~~~~~~~~~~~~   56 (169)
T smart00650        9 ANLRPGDTVLEIGPGKGALTEELLER---------AARVTAIEIDPRLAPRLREKFA   56 (169)
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHhc---------CCeEEEEECCHHHHHHHHHHhc
Confidence            34333458999999999999998764         1268999999999887777664

>PHA03411 putative methyltransferase; Provisional

Probab=96.31  E-value=0.035  Score=53.54  Aligned_cols=100  Identities=23%  Similarity=0.322  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcce
Q 020840           84 SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVN  163 (320)
Q Consensus        84 ~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~  163 (320)
                      ..|-+.+...|... ..++-.+  .+-.|+    .|+... ++..|-|+|+..|-..|  ++       .  .. + .-+
T Consensus         9 ~~l~~~~~~l~~~~-~~~~~~~--~~~v~~----~~~g~~-~~~~G~FfTP~~i~~~f--~~-------~--~~-~-~gr   67 (279)
T PHA03411          9 QKLHDRVMELINSD-RPLTYEE--KEFCYN----NYHGDG-LGGSGAFFTPEGLAWDF--TI-------D--AH-C-TGK   67 (279)
T ss_pred             HHHHHHHHHHHhCC-cccccCc--HHHHHH----hccccc-ccCceeEcCCHHHHHHH--Hh-------c--cc-c-CCe
Confidence            45666677777764 4454331  222222    233322 66789999999985444  11       1  11 1 238


Q ss_pred             EEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      |+|+|||+|.+...+++..   +    ..+++.||+||.+.+.-++++
T Consensus        68 VLDLGcGsGilsl~la~r~---~----~~~V~gVDisp~al~~Ar~n~  108 (279)
T PHA03411         68 VLDLCAGIGRLSFCMLHRC---K----PEKIVCVELNPEFARIGKRLL  108 (279)
T ss_pred             EEEcCCCCCHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHhC
Confidence            9999999999887765531   1    247999999999988776654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.30  E-value=0.016  Score=55.23  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=36.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-.|+|||||.|.|..-+++...         +++-||+.+.|.+.-++++.
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~~---------~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERAA---------RVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhcC---------eEEEEEeCHHHHHHHHHhcc
Confidence            46899999999999999887532         48999999999998888775

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.28  E-value=0.013  Score=46.51  Aligned_cols=43  Identities=23%  Similarity=0.324  Sum_probs=35.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      -+|+|+|||+|.++..+++..   |    ..+++-||+||.+.+.-++++
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~---~----~~~v~gvD~s~~~~~~a~~~~   45 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLF---P----GARVVGVDISPEMLEIARERA   45 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHH---T----TSEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEEcCcCCHHHHHHHhcC---C----CCEEEEEeCCHHHHHHHHHHH
Confidence            389999999999999888732   2    246999999999998888877

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.16  E-value=0.048  Score=50.58  Aligned_cols=51  Identities=16%  Similarity=0.297  Sum_probs=37.2

Q ss_pred             HHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       152 ~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +...++ +.+.+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---------g~~v~~vD~s~~~l~~a~~~~~   87 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAEL---------GHQVILCDLSAEMIQRAKQAAE   87 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            333344 34469999999999988777542         1368999999999887666654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=96.15  E-value=0.022  Score=50.75  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       144 ~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .++..+.+.+.......+.+|+|+|||+|.+...+++..   |    ..+|+.||+|+.+.+..++++.
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~----~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---P----QAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC---C----CCcEEEEeChHHHHHHHHHhcC
Confidence            344555554444332334689999999999888776543   2    2369999999999877766553

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.14  E-value=0.055  Score=48.91  Aligned_cols=53  Identities=11%  Similarity=0.169  Sum_probs=38.6

Q ss_pred             HHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.++....-+|+|+|||+|.++..+.+.+.      ...+++-||+|+.+.+.-++++.
T Consensus        39 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~~v~gvD~s~~~~~~a~~~~~   91 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGTADWSIALAEAVG------PEGHVIGLDFSENMLSVGRQKVK   91 (231)
T ss_pred             HhcCCCCCCEEEEeCCCcCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHH
Confidence            334443345899999999999988876542      22479999999998876666554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.14  E-value=0.043  Score=49.24  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=38.0

Q ss_pred             HHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       150 ~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .......+.+...+|+|+|||+|.++..+++.         ..+|+.||+|+.+.+.-++++.
T Consensus        53 ~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---------~~~v~~~D~s~~~i~~a~~~~~  106 (230)
T PRK07580         53 LSWLPADGDLTGLRILDAGCGVGSLSIPLARR---------GAKVVASDISPQMVEEARERAP  106 (230)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            33333333444569999999999988776542         1359999999999877666654

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.00  E-value=0.02  Score=54.14  Aligned_cols=66  Identities=24%  Similarity=0.392  Sum_probs=45.5

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      .+|.  .|++.+.+.        .++++.   ++....-+|+|+|||+|.++..+++..   +      +++.||+++.+
T Consensus        19 ~~gq--~fl~~~~i~--------~~i~~~---l~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~avE~d~~~   76 (272)
T PRK00274         19 SLGQ--NFLIDENIL--------DKIVDA---AGPQPGDNVLEIGPGLGALTEPLLERA---A------KVTAVEIDRDL   76 (272)
T ss_pred             ccCc--CcCCCHHHH--------HHHHHh---cCCCCcCeEEEeCCCccHHHHHHHHhC---C------cEEEEECCHHH
Confidence            3554  488877652        222221   232233589999999999999887752   1      58999999999


Q ss_pred             HHHHHHhc
Q 020840          204 QKLQHHNL  211 (320)
Q Consensus       204 r~~Q~e~L  211 (320)
                      .+.-++++
T Consensus        77 ~~~~~~~~   84 (272)
T PRK00274         77 APILAETF   84 (272)
T ss_pred             HHHHHHhh
Confidence            88777665

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=95.88  E-value=0.015  Score=46.03  Aligned_cols=45  Identities=24%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             EEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      |+|+|||+|+....+++.+..-|    ..+|+.||+|+.+-+.=+++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~----~~~~~gvD~s~~~l~~~~~~~~   45 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGP----SSRVIGVDISPEMLELAKKRFS   45 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcc----cceEEEEECCHHHHHHHHHhch
Confidence            79999999999999998862222    2579999999999877666654

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.86  E-value=0.016  Score=49.28  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+|+|+|||+|.++..+++.+      ....+|+-||+|+.+.+.-++++..
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~~i~~a~~~~~~   50 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEEMIEYAKKRAKE   50 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHHHHHHhhccccc
Confidence            4689999999999999887622      2234799999999998887776543

...

>TIGR00755 ksgA dimethyladenosine transferase

Probab=95.85  E-value=0.025  Score=52.70  Aligned_cols=47  Identities=30%  Similarity=0.493  Sum_probs=36.0

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-.|+|+|||.|.++.-+++..   +      .++.||+++.+.+.-++++.
T Consensus        26 ~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        26 NVLEGDVVLEIGPGLGALTEPLLKRA---K------KVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             CCCCcCEEEEeCCCCCHHHHHHHHhC---C------cEEEEECCHHHHHHHHHHhC
Confidence            33334589999999999999887653   1      38999999999877666553

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.85  E-value=0.0013  Score=51.70  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=30.5

Q ss_pred             EEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +|+|||+|.++..|++.+       ...+|+.||+||.+.+.-++++.
T Consensus         1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~   41 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLA   41 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHH
T ss_pred             CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhh
Confidence            699999999999999875       33589999999999744444443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.80  E-value=0.026  Score=51.18  Aligned_cols=48  Identities=21%  Similarity=0.371  Sum_probs=37.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+.|+|+|||+|-+.+.||+.--. |     -..++||.|+.....-.++...
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~-~-----~~L~~iE~~~dF~~~L~~~~p~   95 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVR-P-----ESLTAIEYSPDFVCHLNQLYPG   95 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCC-c-----cceEEEEeCHHHHHHHHHhCCC
Confidence            3468999999999999999986321 2     2578999999998776665543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.72  E-value=0.036  Score=44.34  Aligned_cols=50  Identities=20%  Similarity=0.288  Sum_probs=36.8

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.+..-+|+|+|||.|.++..+++..   |.    .+++.||.|+.+.+.-++++.
T Consensus        15 ~~~~~~~~vldlG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~~   64 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGSGSITIEAARLV---PN----GRVYAIERNPEALRLIERNAR   64 (124)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHC---CC----ceEEEEcCCHHHHHHHHHHHH
Confidence            343333489999999999999887643   22    479999999998876555443

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=95.67  E-value=0.19  Score=48.04  Aligned_cols=71  Identities=14%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|-|+.-|+...+.-+.+..++     ..  ..+.+|+|+|||+|.++..+.+..   |    ..+++.||+|+...+.-
T Consensus        96 ~~vlipr~~te~lv~~~l~~~~-----~~--~~~~~vLDlG~GsG~i~~~la~~~---~----~~~v~avDis~~al~~A  161 (284)
T TIGR03533        96 ERVLIPRSPIAELIEDGFAPWL-----EP--EPVKRILDLCTGSGCIAIACAYAF---P----EAEVDAVDISPDALAVA  161 (284)
T ss_pred             CCCccCCCchHHHHHHHHHHHh-----cc--CCCCEEEEEeCchhHHHHHHHHHC---C----CCEEEEEECCHHHHHHH
Confidence            3567766666444444433222     11  123589999999999998887643   2    24789999999998776


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++++.
T Consensus       162 ~~n~~  166 (284)
T TIGR03533       162 EINIE  166 (284)
T ss_pred             HHHHH
Confidence            66654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=95.58  E-value=0.1  Score=47.03  Aligned_cols=44  Identities=16%  Similarity=0.317  Sum_probs=35.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||.|.++.-+.+.         ..+++-||+|+.+....++++.
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~gvD~s~~~i~~a~~~~~   98 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR---------GAIVKAVDISEQMVQMARNRAQ   98 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence            3468999999999988876542         1268999999999888777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.53  E-value=0.19  Score=48.68  Aligned_cols=70  Identities=13%  Similarity=0.299  Sum_probs=46.0

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      +-|+.-|+...+--+.+..|+     .. .+ ..+|+|+|||+|.++..+....   |    ..+++.||+|+...+.-+
T Consensus       109 ~vlipr~~te~lv~~~l~~~~-----~~-~~-~~~VLDlG~GsG~iai~la~~~---p----~~~V~avDis~~al~~A~  174 (307)
T PRK11805        109 RVLVPRSPIAELIEDGFAPWL-----ED-PP-VTRILDLCTGSGCIAIACAYAF---P----DAEVDAVDISPDALAVAE  174 (307)
T ss_pred             CCcCCCCchHHHHHHHHHHHh-----cc-CC-CCEEEEEechhhHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHH
Confidence            456666666444444333222     11 11 2489999999999998876542   3    247999999999988777


Q ss_pred             Hhcc
Q 020840          209 HNLK  212 (320)
Q Consensus       209 e~L~  212 (320)
                      +++.
T Consensus       175 ~n~~  178 (307)
T PRK11805        175 INIE  178 (307)
T ss_pred             HHHH
Confidence            6664

>PRK08317 hypothetical protein; Provisional

Probab=95.40  E-value=0.076  Score=47.08  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=37.4

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .++.....+|+|+|||.|.++..+.+.+.      ...+++.||+|+.+.+..+++
T Consensus        14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~------~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGPGNDARELARRVG------PEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHhcC------CCcEEEEEeCCHHHHHHHHHH
Confidence            34444456999999999999998876541      224799999999987766554

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.39  E-value=0.056  Score=50.08  Aligned_cols=54  Identities=24%  Similarity=0.312  Sum_probs=38.3

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      +..+...++....-+|+|+|||+|.++..+.+..   |.    .+++-||+|+.+.+.-++
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~---p~----~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRW---PG----AVIEALDSSPEMVAAARE   71 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHh
Confidence            3344444554445699999999999988776532   32    369999999999775544

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.38  E-value=0.11  Score=44.33  Aligned_cols=46  Identities=22%  Similarity=0.403  Sum_probs=35.7

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .....||++|+|.|.|+.-+...+.+.   ...++++.||.++.+.+.-
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a   69 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESA   69 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHH
Confidence            345799999999999999888777543   1346899999999885533

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=95.34  E-value=0.41  Score=45.25  Aligned_cols=122  Identities=15%  Similarity=0.084  Sum_probs=69.6

Q ss_pred             CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccC---CCCCCCCCCCeecCCChhHHHHHHHHHHHHHHH-HHc
Q 020840           81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI---NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLW-EQM  156 (320)
Q Consensus        81 ~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~---~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w-~~~  156 (320)
                      .+...|...|..+++.. |--++++|.+....++...=..   ..--+|...-|--+..    |.. +..++...+ +..
T Consensus        22 ~k~~~l~~rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~----~~~-l~~~vlp~l~~~~   95 (264)
T smart00138       22 YKRTLLQSRLSRRLRVL-GLKDFSEYLELLTSHRGEEELAELLDLMTTNETRFFRESKH----FEA-LEEKVLPLLIASR   95 (264)
T ss_pred             chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHH----HHH-HHHHHhHHHHHhc
Confidence            45678899999999987 6678999999888775211110   0011232222222222    222 233333222 222


Q ss_pred             CCCCcceEEEecCCchh----HHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          157 GQPNRVNLVELGPGRGT----LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       157 g~p~~l~IvEiGaG~Gt----La~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ....+++|+++|||+|.    ||.-+++.....  -....+++-+|+|+.+-+.-++.
T Consensus        96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~  151 (264)
T smart00138       96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKA--REPDVKILATDIDLKALEKARAG  151 (264)
T ss_pred             CCCCCEEEEeccccCChHHHHHHHHHHHHhhhc--CCCCeEEEEEECCHHHHHHHHcC
Confidence            22345899999999996    444444433211  01245899999999987655553

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.33  E-value=0.075  Score=54.30  Aligned_cols=65  Identities=14%  Similarity=0.160  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      -..|.++|...+.+........ ....|+.+|||||-|..-.+++.+...   .+.+++.||.||....
T Consensus       163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---~a~~VyAVEkn~~A~~  228 (448)
T PF05185_consen  163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---GAVKVYAVEKNPNAVV  228 (448)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC---CESEEEEEESSTHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC---CCeEEEEEcCCHhHHH
Confidence            3568888888777665543221 246899999999999998888865422   3468999999996543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.27  E-value=0.056  Score=47.65  Aligned_cols=48  Identities=21%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      +.+..-+|+|+|||+|.++..+.+..   |    ..+++.||+|+.+.+.-++++
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~---~----~~~v~~vD~s~~~~~~a~~n~   75 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQF---P----SLQVTAIERNPDALRLIKENR   75 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHH
Confidence            33344589999999999999887642   2    247999999998876555544

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.25  E-value=0.045  Score=49.43  Aligned_cols=66  Identities=14%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       135 pEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+--|.+|.+...|..-    .+. ..-.|+|+|||+|.++..+.+..   |.    .+++-||+|+.+.+..++++.
T Consensus        20 ~~~~~~~~~~~~~~~~~----~~~-~~~~VLDiGcGtG~~~~~la~~~---p~----~~v~gVD~s~~~i~~a~~~~~   85 (202)
T PRK00121         20 EELWPRLSPAPLDWAEL----FGN-DAPIHLEIGFGKGEFLVEMAKAN---PD----INFIGIEVHEPGVGKALKKIE   85 (202)
T ss_pred             cccchhhcCCCCCHHHH----cCC-CCCeEEEEccCCCHHHHHHHHHC---CC----ccEEEEEechHHHHHHHHHHH
Confidence            33346666666665532    122 23589999999999999886542   32    369999999999887777664

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.19  E-value=0.076  Score=49.16  Aligned_cols=46  Identities=22%  Similarity=0.423  Sum_probs=35.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..++..+   |    ..+++.+|+|+...+.-++++.
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~---~----~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKER---P----DAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            34689999999999988887654   2    2479999999998776666554

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=95.17  E-value=0.056  Score=52.19  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=35.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .-.|+|+|||.|.|..-++...         .+++.||+++.+.+.-++++..
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~~---------~~V~avEiD~~li~~l~~~~~~   80 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQLA---------KKVIAIEIDPRMVAELKKRFQN   80 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHhC---------CcEEEEECCHHHHHHHHHHHHh
Confidence            3589999999999998877631         2589999999999988777753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=95.01  E-value=0.033  Score=46.47  Aligned_cols=39  Identities=21%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      +...+|+|+|||.|.++..+    +..+     .+++.||+|+.+.+.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l----~~~~-----~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRAL----AKRG-----FEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHH----HHTT-----SEEEEEESSHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHH----HHhC-----CEEEEEECCHHHHhh
Confidence            45569999999999877665    2221     279999999998876

...

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.01  E-value=0.084  Score=48.06  Aligned_cols=47  Identities=26%  Similarity=0.310  Sum_probs=36.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .-+|+|+|||+|.++.-+.+.+..      ..+++-||+++.+.+.-++++..
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~------~~~V~~vE~~~~~~~~a~~~l~~  123 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGK------SGKVVTIERIPELAEKAKKTLKK  123 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence            358999999999999776654321      23689999999999888777753

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.88  E-value=0.065  Score=55.15  Aligned_cols=82  Identities=22%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCc-ccceeEEEEecChhhHH
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF-TESLHIHLVECSPTLQK  205 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~-~~~l~y~iVE~Sp~Lr~  205 (320)
                      +.|-|+|++.|.....+++....-    ........+|+|.|||+|.|...+++.+...... .-....+.+|+++.+..
T Consensus         2 ~~GqfyTP~~ia~~mv~~~~~~~~----~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~   77 (524)
T TIGR02987         2 AYGTFFTPPDIAKAMVANLVNEIG----KNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK   77 (524)
T ss_pred             CCcccCCcHHHHHHHHHHHhhhcc----hhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence            358999999997665544332211    1111134699999999999999999987531111 11357899999999877


Q ss_pred             HHHHhcc
Q 020840          206 LQHHNLK  212 (320)
Q Consensus       206 ~Q~e~L~  212 (320)
                      .-+..|.
T Consensus        78 ~a~~~l~   84 (524)
T TIGR02987        78 RAKKLLG   84 (524)
T ss_pred             HHHHHHh
Confidence            6665553

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.83  E-value=0.23  Score=45.70  Aligned_cols=67  Identities=15%  Similarity=0.286  Sum_probs=44.6

Q ss_pred             CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       130 DFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      .|.|.+++..        +++......|.-+--.|+++|||+|.|+...+        ++.+-+++-||+.|...+.-++
T Consensus        23 QY~Tp~~~Aa--------~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~--------~lGa~~V~~vdiD~~a~ei~r~   86 (198)
T COG2263          23 QYRTPAPLAA--------YILWVAYLRGDLEGKTVLDLGAGTGILAIGAA--------LLGASRVLAVDIDPEALEIARA   86 (198)
T ss_pred             ecCCChHHHH--------HHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHH--------hcCCcEEEEEecCHHHHHHHHH
Confidence            4567766543        33222222343333479999999999998764        2334468899999999988877


Q ss_pred             hcc
Q 020840          210 NLK  212 (320)
Q Consensus       210 ~L~  212 (320)
                      +..
T Consensus        87 N~~   89 (198)
T COG2263          87 NAE   89 (198)
T ss_pred             HHH
Confidence            664

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=94.82  E-value=0.13  Score=46.43  Aligned_cols=78  Identities=10%  Similarity=0.106  Sum_probs=49.2

Q ss_pred             CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       125 ~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      +....++++.....+++-+-+-.-+. ...  ..|...+|+|+|||+|.++..+.+..   |    ..+++.||+|+.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~d~l~-l~~--~l~~g~~VLDiGcGtG~~al~la~~~---~----~~~V~giD~s~~~l   82 (187)
T PRK00107         13 WNKKYNLTAIRDPEELWERHILDSLA-IAP--YLPGGERVLDVGSGAGFPGIPLAIAR---P----ELKVTLVDSLGKKI   82 (187)
T ss_pred             hcccccccccCCHHHHHHHHHHHHHH-HHh--hcCCCCeEEEEcCCCCHHHHHHHHHC---C----CCeEEEEeCcHHHH
Confidence            34567777777665544333322111 111  12224689999999999888877632   2    24799999999988


Q ss_pred             HHHHHhcc
Q 020840          205 KLQHHNLK  212 (320)
Q Consensus       205 ~~Q~e~L~  212 (320)
                      +.-++++.
T Consensus        83 ~~A~~~~~   90 (187)
T PRK00107         83 AFLREVAA   90 (187)
T ss_pred             HHHHHHHH
Confidence            76666554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.80  E-value=0.43  Score=45.26  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+....   |    ..+++.||+|+...+..++++.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~---~----~~~v~avDis~~al~~a~~n~~  159 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF---P----NAEVIAVDISPDALAVAEENAE  159 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998887653   2    2479999999988887777654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=94.77  E-value=0.27  Score=49.07  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +..+.+.++....-+|+|+|||.|.++..+.+..        ..+++-||+|+.+.+.-+++..
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--------g~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--------GVSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--------CCEEEEEeCCHHHHHHHHHHhc
Confidence            3334445554444589999999999987765431        2368999999999887766553

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.74  E-value=0.12  Score=46.60  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|||+|.++.-+.+.+..      .-+++-||+++.+.+.-++++..
T Consensus        74 ~~VLDiG~GsG~~~~~la~~~~~------~g~V~~iD~~~~~~~~a~~~l~~  119 (205)
T PRK13944         74 MKILEVGTGSGYQAAVCAEAIER------RGKVYTVEIVKELAIYAAQNIER  119 (205)
T ss_pred             CEEEEECcCccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence            58999999999999776654421      12699999999998877776643

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=94.71  E-value=0.12  Score=48.53  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .+|+|+|||+|.++..+.+.+...    ...+++-||+|+.+.+.-+++.
T Consensus        87 ~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~~~  132 (272)
T PRK11088         87 TALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAKRY  132 (272)
T ss_pred             CeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHHhC
Confidence            579999999999999887764321    1136899999999887665543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=94.70  E-value=0.14  Score=45.78  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=35.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..++...   |   ...+++.+|+|+.+.+.-++++.
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~---~---~~~~v~~~D~s~~~~~~a~~~~~   97 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAV---G---KTGEVVGLDFSEGMLAVGREKLR   97 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHhhc
Confidence            3689999999999998887754   2   13479999999988776655553

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.69  E-value=0.1  Score=46.49  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=34.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|.++..+.+.   .|    ..+++.||+||.+.+.-++++.
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~---~~----~~~V~~vD~s~~~~~~a~~n~~   85 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLL---CP----KGRVIAIERDEEVVNLIRRNCD   85 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHHHHHH
Confidence            358999999999998887543   22    2369999999999887666654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.67  E-value=0.05  Score=45.81  Aligned_cols=40  Identities=28%  Similarity=0.576  Sum_probs=31.2

Q ss_pred             HHHH-HHHHHHHHHHHHcCCC-CcceEEEecCCchhHHHHHHH
Q 020840          140 MFGE-MVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLR  180 (320)
Q Consensus       140 ~FGe-~IA~~i~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~  180 (320)
                      +|=. +||.|++.+|+.+..+ .+...|++|||+|-|.. ||.
T Consensus        36 VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~-IL~   77 (112)
T PF07757_consen   36 VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVY-ILN   77 (112)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHH-HHH
Confidence            4433 5999999999988655 56789999999998765 443

; GO: 0008168 methyltransferase activity

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=94.67  E-value=0.14  Score=46.37  Aligned_cols=48  Identities=21%  Similarity=0.254  Sum_probs=36.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..-+|+|+|||+|.++.-+.+...      ...+++-||+++.+.+.-++++..
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~------~~g~V~~vD~~~~~~~~A~~~~~~  124 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVG------RDGLVVSIERIPELAEKAERRLRK  124 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            335899999999999986655432      123689999999999887777653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=94.60  E-value=0.099  Score=41.80  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=37.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .+|+|+|||+|+++..+++..        ..+++-||++|...+.-+.++..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~   45 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR   45 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH
T ss_pred             CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH
Confidence            489999999999999888763        34799999999999988887754

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=94.57  E-value=0.47  Score=44.48  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=35.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+|+|+|||+|.++..+.+..   +.    .+++.||+|+...+..++++.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~---~~----~~v~~vDis~~al~~A~~N~~  131 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL---DG----IELHAADIDPAAVRCARRNLA  131 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            3589999999999998877643   22    368999999999887777664

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.55  E-value=0.097  Score=50.74  Aligned_cols=50  Identities=22%  Similarity=0.361  Sum_probs=40.5

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM  214 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~  214 (320)
                      ......-.|+|+|||+|.|..-+|+.-+         .++-+|+.|.|...-.++.++-
T Consensus        54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k---------kVvA~E~Dprmvael~krv~gt  103 (315)
T KOG0820|consen   54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK---------KVVAVEIDPRMVAELEKRVQGT  103 (315)
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHhcC---------eEEEEecCcHHHHHHHHHhcCC
Confidence            3433445899999999999999998654         4889999999999888877653

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.53  E-value=0.18  Score=49.63  Aligned_cols=45  Identities=22%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|||.|.++..+++.   .|    ..+++.||+|+.+.+.-++++..
T Consensus       198 g~VLDlGCG~G~ls~~la~~---~p----~~~v~~vDis~~Al~~A~~nl~~  242 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARH---SP----KIRLTLSDVSAAALESSRATLAA  242 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            37999999999998877653   23    24799999999888777776653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=94.52  E-value=0.25  Score=44.79  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=35.2

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..++...   |    ..+++.||+|+.+.+.-++.+.
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~---~----~~~v~~iD~~~~~~~~a~~~~~  132 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKER---P----DARVTAVDISPEALAVARKNAA  132 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            589999999999998887643   2    2479999999999887666554

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=94.51  E-value=0.12  Score=46.28  Aligned_cols=52  Identities=13%  Similarity=0.162  Sum_probs=39.4

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++....-.|+|+|||+|.++..+++.+.      ...+++.||+|+.+.+.-++++..
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~------~~~~v~avD~~~~~~~~a~~n~~~   87 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVG------ETGKVYAVDKDEKAINLTRRNAEK   87 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence            4544456899999999999998877642      124799999999998876666543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=94.46  E-value=0.12  Score=46.04  Aligned_cols=44  Identities=16%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+...   .|    ..+++.||.|+.+.+.-++.+.
T Consensus        44 ~~vLDiGcGtG~~s~~la~~---~~----~~~V~~iD~s~~~~~~a~~~~~   87 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIA---RP----ELKLTLLESNHKKVAFLREVKA   87 (181)
T ss_pred             CeEEEecCCCCccHHHHHHH---CC----CCeEEEEeCcHHHHHHHHHHHH
Confidence            58999999999988876532   22    2469999999988765555443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=94.45  E-value=0.17  Score=50.67  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|||+|.++.-+.+.   .|.    .+++.||+|+...+..++++..
T Consensus       230 ~~VLDLGCGtGvi~i~la~~---~P~----~~V~~vD~S~~Av~~A~~N~~~  274 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDK---NPQ----AKVVFVDESPMAVASSRLNVET  274 (378)
T ss_pred             CeEEEEeccccHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence            48999999999988766543   343    4799999999988887777653

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=94.45  E-value=0.18  Score=48.52  Aligned_cols=52  Identities=12%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      +.+...+++++++|+|-.|..||++....+.. ...+++++|+||.+-+.-++
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~-~~~~V~v~Dinp~mL~vgkq  148 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD-RESKVTVLDINPHMLAVGKQ  148 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCC-CCceEEEEeCCHHHHHHHHH
Confidence            44455799999999999999999998753332 23579999999999765444

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.44  E-value=0.18  Score=45.40  Aligned_cols=45  Identities=29%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ...+|+|+|||+|.++. +|..+.        -+++.||+++.+.+.-++++..
T Consensus        78 ~~~~VLeiG~GsG~~t~-~la~~~--------~~v~~vd~~~~~~~~a~~~~~~  122 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAA-VLAHLV--------RRVFSVERIKTLQWEAKRRLKQ  122 (212)
T ss_pred             CCCEEEEECCCccHHHH-HHHHHh--------CEEEEEeCCHHHHHHHHHHHHH
Confidence            34689999999999887 443321        1589999999998877776653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=94.40  E-value=0.093  Score=46.91  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      -.|+|+|||+|.++..+.+.   +|+    ..++-||+|+.+.+.-++++
T Consensus        18 ~~ilDiGcG~G~~~~~la~~---~p~----~~v~gvD~~~~~l~~a~~~~   60 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQ---NPD----KNFLGIEIHTPIVLAANNKA   60 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHh---CCC----CCEEEEEeeHHHHHHHHHHH
Confidence            38999999999998887753   343    36999999998876555544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14967 putative methyltransferase; Provisional

Probab=94.31  E-value=0.26  Score=44.90  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=32.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+.    +    ..+++.||+|+.+.+..++++.
T Consensus        38 ~~vLDlGcG~G~~~~~la~~----~----~~~v~~vD~s~~~l~~a~~n~~   80 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAA----G----AGSVTAVDISRRAVRSARLNAL   80 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            58999999999987765541    1    1268999999998876666553

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=94.29  E-value=0.079  Score=50.36  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      ..|-|+|+.+|..+..+++           .....-+|++-.||+|.|...+.++++....-....+++-+|+++.....
T Consensus        24 ~~G~~~TP~~i~~l~~~~~-----------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l   92 (311)
T PF02384_consen   24 KLGQFYTPREIVDLMVKLL-----------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL   92 (311)
T ss_dssp             SCGGC---HHHHHHHHHHH-----------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH
T ss_pred             ccceeehHHHHHHHHHhhh-----------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH
Confidence            4689999999987766654           21223479999999999999999987532111234578999999998876


Q ss_pred             HHHhc
Q 020840          207 QHHNL  211 (320)
Q Consensus       207 Q~e~L  211 (320)
                      -+-.|
T Consensus        93 a~~nl   97 (311)
T PF02384_consen   93 AKLNL   97 (311)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            65444

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.20  E-value=0.17  Score=46.45  Aligned_cols=42  Identities=12%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .-+|+|+|||+|.++..+..    .     ..+++.||+|+.+.+..+++.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~----~-----~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRE----R-----GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHH----c-----CCeEEEEECCHHHHHHHHhhC
Confidence            35899999999998765532    1     136999999999988776654

>PRK00811 spermidine synthase; Provisional

Probab=94.20  E-value=0.2  Score=47.87  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|..-++-.---.|=|+++.--+.     -.|.+-+|+++|+|.|.++..+|+.    +.   ..++++||+++.+.+.-
T Consensus        49 Dg~~q~~~~de~~Y~e~l~h~~~~-----~~~~p~~VL~iG~G~G~~~~~~l~~----~~---~~~V~~VEid~~vv~~a  116 (283)
T PRK00811         49 DGCVMTTERDEFIYHEMMTHVPLF-----AHPNPKRVLIIGGGDGGTLREVLKH----PS---VEKITLVEIDERVVEVC  116 (283)
T ss_pred             CCeeeecCcchhhHHHHhhhHHHh-----hCCCCCEEEEEecCchHHHHHHHcC----CC---CCEEEEEeCCHHHHHHH
Confidence            466665543334566666544321     1234458999999999999988753    21   23699999999999888


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++.+.
T Consensus       117 ~~~~~  121 (283)
T PRK00811        117 RKYLP  121 (283)
T ss_pred             HHHhH
Confidence            87764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=94.16  E-value=0.2  Score=43.83  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+.   .    .  +++.||+||.+.+.-++++.
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~---~----~--~v~~vD~s~~~~~~a~~~~~   62 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGK---G----K--CILTTDINPFAVKELRENAK   62 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhc---C----C--EEEEEECCHHHHHHHHHHHH
Confidence            47999999999998877652   1    1  68999999999876665553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=94.11  E-value=0.22  Score=43.95  Aligned_cols=49  Identities=16%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+...+|+|+|||.|.++..+++..   |.   ..+|+.+|+++.+.+.=++++
T Consensus        36 ~~~~~~~vldiG~G~G~~~~~~~~~~---~~---~~~~~~iD~~~~~~~~~~~~~   84 (223)
T TIGR01934        36 GVFKGQKVLDVACGTGDLAIELAKSA---PD---RGKVTGVDFSSEMLEVAKKKS   84 (223)
T ss_pred             ccCCCCeEEEeCCCCChhHHHHHHhc---CC---CceEEEEECCHHHHHHHHHHh
Confidence            33345699999999999988887654   21   247999999998876555544

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=94.09  E-value=0.2  Score=48.75  Aligned_cols=70  Identities=21%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|=||-=||.     |-+..++++...+...-.+..|+|+|+|+|..+..+|..|.       +.+++-||.|+.-.+.-
T Consensus       121 pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La  188 (328)
T KOG2904|consen  121 PGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLA  188 (328)
T ss_pred             CCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHH
Confidence            5677777775     44556677766665555556899999999999999987653       35789999999876644


Q ss_pred             HH
Q 020840          208 HH  209 (320)
Q Consensus       208 ~e  209 (320)
                      ++
T Consensus       189 ~e  190 (328)
T KOG2904|consen  189 KE  190 (328)
T ss_pred             HH
Confidence            44

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.06  E-value=0.11  Score=39.05  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             EEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +|+|||.|..+.-+.+.        ...+|+-+|+|+.+.+.-++++.
T Consensus         1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~   40 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK   40 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT
T ss_pred             CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc
Confidence            69999999999887764        23479999999998777666664

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00417 speE spermidine synthase

Probab=93.83  E-value=0.24  Score=46.78  Aligned_cols=72  Identities=19%  Similarity=0.348  Sum_probs=46.5

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      |..-++..--..|-|+++.--+     +..+.+-+|+|+|+|.|.++..+++..       ...++++||+++.+.+.-+
T Consensus        46 g~~q~~~~~e~~y~e~l~~~~l-----~~~~~p~~VL~iG~G~G~~~~~ll~~~-------~~~~v~~veid~~vi~~a~  113 (270)
T TIGR00417        46 GVVQTTERDEFIYHEMIAHVPL-----FTHPNPKHVLVIGGGDGGVLREVLKHK-------SVEKATLVDIDEKVIELSK  113 (270)
T ss_pred             CcccccCchHHHHHHHhhhhHh-----hcCCCCCEEEEEcCCchHHHHHHHhCC-------CcceEEEEeCCHHHHHHHH
Confidence            4444442223456666654221     123334599999999999988887642       1236999999999987766


Q ss_pred             Hhcc
Q 020840          209 HNLK  212 (320)
Q Consensus       209 e~L~  212 (320)
                      +.+.
T Consensus       114 ~~~~  117 (270)
T TIGR00417       114 KFLP  117 (270)
T ss_pred             HHhH
Confidence            6653

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=93.82  E-value=0.29  Score=50.66  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+|+|+|||+|.++..++..+   |.    .+++.||+|+...+.-++++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~---p~----~~v~avDis~~al~~A~~N~~  183 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL---PN----ANVIATDISLDAIEVAKSNAI  183 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC---CC----CeEEEEECCHHHHHHHHHHHH
Confidence            3589999999999999877643   32    479999999988887777654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.51  E-value=0.43  Score=45.73  Aligned_cols=43  Identities=23%  Similarity=0.457  Sum_probs=33.7

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +|+|+|+|+|.+|..+....   |+    .+++-+|+||.-.+.-+++..
T Consensus       113 ~ilDlGTGSG~iai~la~~~---~~----~~V~a~Dis~~Al~~A~~Na~  155 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG---PD----AEVIAVDISPDALALARENAE  155 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC---cC----CeEEEEECCHHHHHHHHHHHH
Confidence            79999999999999887654   32    479999999987666555543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=93.50  E-value=0.27  Score=43.94  Aligned_cols=62  Identities=13%  Similarity=0.063  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHcC-CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          142 GEMVGVWAMCLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g-~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ......|+.+.+...+ .....+|+|+|||+|.++..+.+.   .      .+|+.+|.|+.+.+.-++++.
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~~   88 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---G------ANVTGIDASEENIEVAKLHAK   88 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---C------CeEEEEeCCHHHHHHHHHHHH
Confidence            3334566666555432 123569999999999988766542   1      249999999988665555443

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05785 hypothetical protein; Provisional

Probab=93.46  E-value=0.25  Score=45.56  Aligned_cols=42  Identities=10%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      +-+|+|+|||+|.++..+.+..        ..+++-||+|+.+.+.-+++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~--------~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF--------KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc--------CCEEEEECCCHHHHHHHHhc
Confidence            3589999999999887765432        13699999999998876553

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=93.43  E-value=0.24  Score=44.48  Aligned_cols=42  Identities=14%  Similarity=0.097  Sum_probs=32.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||.|.++.-+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        32 ~~vLDiGcG~G~~a~~La~~---------g~~V~gvD~S~~~i~~a~~~~~   73 (197)
T PRK11207         32 GKTLDLGCGNGRNSLYLAAN---------GFDVTAWDKNPMSIANLERIKA   73 (197)
T ss_pred             CcEEEECCCCCHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            58999999999988776542         1368999999998776655443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=93.36  E-value=0.16  Score=37.50  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      +|+|+|||.|.++..++.    .    ...+|+.+|.++......+
T Consensus         1 ~ildig~G~G~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~   38 (107)
T cd02440           1 RVLDLGCGTGALALALAS----G----PGARVTGVDISPVALELAR   38 (107)
T ss_pred             CeEEEcCCccHHHHHHhc----C----CCCEEEEEeCCHHHHHHHH
Confidence            489999999998877765    1    2347999999998766554

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=93.31  E-value=0.25  Score=46.47  Aligned_cols=49  Identities=12%  Similarity=0.255  Sum_probs=36.7

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.+...+|+|+|||.|.++..+...   .     ..+++.||+|+.+.+..+++..
T Consensus        48 l~l~~~~~VLDiGcG~G~~a~~la~~---~-----~~~v~giD~s~~~~~~a~~~~~   96 (263)
T PTZ00098         48 IELNENSKVLDIGSGLGGGCKYINEK---Y-----GAHVHGVDICEKMVNIAKLRNS   96 (263)
T ss_pred             CCCCCCCEEEEEcCCCChhhHHHHhh---c-----CCEEEEEECCHHHHHHHHHHcC
Confidence            44445569999999999988766532   1     2479999999999887776553

>PRK04457 spermidine synthase; Provisional

Probab=93.22  E-value=0.19  Score=47.53  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=37.6

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+-+|+|+|+|.|+++..+++..   |    ..+++.||++|.+.+.-++.+.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~---p----~~~v~~VEidp~vi~~A~~~f~  111 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL---P----DTRQTAVEINPQVIAVARNHFE  111 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHcC
Confidence            334589999999999999887653   3    3479999999999998777664

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=92.93  E-value=0.37  Score=45.45  Aligned_cols=51  Identities=14%  Similarity=0.235  Sum_probs=40.9

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++......|+|+|||+|.+|..+.+...       ..+++.+|+|+.|-+.-++++..
T Consensus        47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-------~g~v~~~D~s~~ML~~a~~k~~~   97 (238)
T COG2226          47 LGIKPGDKVLDVACGTGDMALLLAKSVG-------TGEVVGLDISESMLEVAREKLKK   97 (238)
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcC-------CceEEEEECCHHHHHHHHHHhhc
Confidence            3443457999999999999988776542       45799999999999988888764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=92.86  E-value=0.47  Score=44.60  Aligned_cols=47  Identities=13%  Similarity=0.049  Sum_probs=33.8

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      +...+|+|+|||+|.++..+.+...  |    ..+++-||+|+.+.+.-+++.
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~--~----~~~V~gvD~S~~ml~~A~~r~  118 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVG--S----DGKVMGLDFSSEQLAVAASRQ  118 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHh
Confidence            3446899999999998876554321  1    236899999999987665543

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=92.68  E-value=0.57  Score=45.98  Aligned_cols=49  Identities=24%  Similarity=0.225  Sum_probs=37.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...|||+|||+|+=.+-+|+++....   ...+|+-||+|...-+.-.++|.
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhh
Confidence            35899999999999999999986321   13579999999766555555565

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR00477 tehB tellurite resistance protein TehB

Probab=92.64  E-value=0.35  Score=43.30  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=31.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      +.+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++.
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~---------g~~V~~iD~s~~~l~~a~~~~   72 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA---------GYDVRAWDHNPASIASVLDMK   72 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence            358999999999999877541         136899999998877544433

Part of a tellurite-reducing operon tehA and tehB

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=92.58  E-value=0.29  Score=46.58  Aligned_cols=57  Identities=25%  Similarity=0.365  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      |-+||.|+.       .+..-+|+|+|+|+|.+..-+-..       +...++..||+.+.+.+.-+++++
T Consensus        33 aiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~r-------~~~a~I~~VEiq~~~a~~A~~nv~   89 (248)
T COG4123          33 AILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQR-------TEKAKIVGVEIQEEAAEMAQRNVA   89 (248)
T ss_pred             HHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhcc-------CCCCcEEEEEeCHHHHHHHHHHHH
Confidence            556777763       233569999999999987654321       122579999999999987777664

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=92.46  E-value=0.55  Score=45.87  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++..
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~---------g~~V~gvD~S~~ml~~A~~~~~  187 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE---------GAIVSASDISAAMVAEAERRAK  187 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence            469999999999998877652         1368999999999776666553

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=92.32  E-value=0.89  Score=43.34  Aligned_cols=43  Identities=19%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+++    .+    .-+++.||+||.+.+.-++++.
T Consensus       161 ~~VLDvGcGsG~lai~aa~----~g----~~~V~avDid~~al~~a~~n~~  203 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALK----LG----AAKVVGIDIDPLAVESARKNAE  203 (288)
T ss_pred             CEEEEeCCChhHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence            5899999999999866543    11    1268999999998776666554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=92.22  E-value=0.93  Score=44.01  Aligned_cols=88  Identities=17%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhh
Q 020840          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTI  228 (320)
Q Consensus       149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~  228 (320)
                      |++.+++...+. -+|+++|||+|-|+-.-+.-        -+-+++-||+.|.-.+.-+++.....             
T Consensus       151 cl~~l~~~~~~g-~~vLDvG~GSGILaiaA~kl--------GA~~v~a~DiDp~Av~~a~~N~~~N~-------------  208 (295)
T PF06325_consen  151 CLELLEKYVKPG-KRVLDVGCGSGILAIAAAKL--------GAKKVVAIDIDPLAVEAARENAELNG-------------  208 (295)
T ss_dssp             HHHHHHHHSSTT-SEEEEES-TTSHHHHHHHHT--------TBSEEEEEESSCHHHHHHHHHHHHTT-------------
T ss_pred             HHHHHHHhccCC-CEEEEeCCcHHHHHHHHHHc--------CCCeEEEecCCHHHHHHHHHHHHHcC-------------
Confidence            344444444444 39999999999998765431        22368999999998776666554311             


Q ss_pred             cccCCCCeEeecccccCCCCCCEEEEEecccccc
Q 020840          229 SSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL  262 (320)
Q Consensus       229 ~~~~~~~i~W~~sleelp~~~~~~iiANE~fDAL  262 (320)
                         ....+.+.. ..+.+.+..-+|+||=+.|-|
T Consensus       209 ---~~~~~~v~~-~~~~~~~~~dlvvANI~~~vL  238 (295)
T PF06325_consen  209 ---VEDRIEVSL-SEDLVEGKFDLVVANILADVL  238 (295)
T ss_dssp             ----TTCEEESC-TSCTCCS-EEEEEEES-HHHH
T ss_pred             ---CCeeEEEEE-ecccccccCCEEEECCCHHHH
Confidence               112444432 233443434689999655443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=92.12  E-value=0.34  Score=46.17  Aligned_cols=46  Identities=26%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             HHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840          154 EQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (320)
Q Consensus       154 ~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp  201 (320)
                      ++.|.. ....+||+|||+|.|+.-|-..+...+  .....|++||...
T Consensus        11 ~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~--~~~~~~~lIDR~~   57 (259)
T PF05206_consen   11 EQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDK--PSNSRFVLIDRAS   57 (259)
T ss_pred             HHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcc--cCCccEEEEecCc
Confidence            344442 456899999999999999988775321  1234699999843

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=92.09  E-value=0.93  Score=44.30  Aligned_cols=75  Identities=25%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             CCCCCeecCCCh----hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840          126 GAEGDFITSPEV----SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (320)
Q Consensus       126 G~~GDFiTSpEI----sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp  201 (320)
                      |...-|+|.|-+    .--+|--|      +.+.+..+..-+|+++|||.|-|..-+.+.   .|    ..+++|||+|.
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS~l------Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~---~p----~~~vtmvDvn~  192 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGSRL------LLETLPPDLGGKVLDLGCGYGVLGLVLAKK---SP----QAKLTLVDVNA  192 (300)
T ss_pred             cCceEEEeCCCCCcCCCcChHHHH------HHHhCCccCCCcEEEeCCCccHHHHHHHHh---CC----CCeEEEEecCH
Confidence            667789999877    12344322      222333333348999999999999877653   34    34799999998


Q ss_pred             hhHHHHHHhccc
Q 020840          202 TLQKLQHHNLKC  213 (320)
Q Consensus       202 ~Lr~~Q~e~L~~  213 (320)
                      .--+.-++++..
T Consensus       193 ~Av~~ar~Nl~~  204 (300)
T COG2813         193 RAVESARKNLAA  204 (300)
T ss_pred             HHHHHHHHhHHH
Confidence            887777777764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=91.98  E-value=0.51  Score=46.23  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||.|.++..+.+.         ..+++-||+|+.+.+.-+++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~---------g~~V~GID~s~~~i~~Ar~~~  173 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM---------GATVTGVDAVDKNVKIARLHA  173 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHH
Confidence            358999999999987755431         136999999999887665543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=91.94  E-value=0.47  Score=46.51  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=34.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-.|+|+|||+|.++.-+.+....      .-.++.||+++.+.+.-++++.
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~------~g~VvgVDis~~~l~~Ar~~l~  126 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGE------KGLVVSVEYSRKICEIAKRNVR  126 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCC------CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999999887664321      1247889999999876666553

>PRK14968 putative methyltransferase; Provisional

Probab=91.88  E-value=0.64  Score=40.06  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|.++..+++.         ..+++.+|+|+...+.-++.+.
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~~~~   66 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKN---------GKKVVGVDINPYAVECAKCNAK   66 (188)
T ss_pred             CEEEEEccccCHHHHHHHhh---------cceEEEEECCHHHHHHHHHHHH
Confidence            47999999999988887663         2368999999988765555553

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.85  E-value=0.54  Score=43.70  Aligned_cols=70  Identities=20%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840          123 DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (320)
Q Consensus       123 ~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~  202 (320)
                      -++| .|-++.+|.+-       |+.+.    .+...+.-.|+|||+|+|..++ ||..+..        +++-||..+.
T Consensus        47 lpi~-~gqtis~P~~v-------A~m~~----~L~~~~g~~VLEIGtGsGY~aA-vla~l~~--------~V~siEr~~~  105 (209)
T COG2518          47 LPIG-CGQTISAPHMV-------ARMLQ----LLELKPGDRVLEIGTGSGYQAA-VLARLVG--------RVVSIERIEE  105 (209)
T ss_pred             ccCC-CCceecCcHHH-------HHHHH----HhCCCCCCeEEEECCCchHHHH-HHHHHhC--------eEEEEEEcHH
Confidence            3566 68888888653       33221    2232233589999999999887 4444422        6899999999


Q ss_pred             hHHHHHHhccc
Q 020840          203 LQKLQHHNLKC  213 (320)
Q Consensus       203 Lr~~Q~e~L~~  213 (320)
                      |.+.-+++|..
T Consensus       106 L~~~A~~~L~~  116 (209)
T COG2518         106 LAEQARRNLET  116 (209)
T ss_pred             HHHHHHHHHHH
Confidence            99988888864

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=91.75  E-value=1.2  Score=45.09  Aligned_cols=44  Identities=11%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||+|.++..+....        ..+++-||+|+.+.+..+++.
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvDiS~~~l~~A~~~~  309 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF--------DVHVVGIDLSVNMISFALERA  309 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHh
Confidence            34589999999999877655422        237999999998877665544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=91.67  E-value=0.61  Score=42.93  Aligned_cols=48  Identities=25%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ...+++|+|+|+|.+++=+-.-...      .-+++-||+.+.|.+.-+++|..
T Consensus        72 pg~~VLeIGtGsGY~aAlla~lvg~------~g~Vv~vE~~~~l~~~A~~~l~~  119 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLAHLVGP------VGRVVSVERDPELAERARRNLAR  119 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHHST------TEEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHhcCc------cceEEEECccHHHHHHHHHHHHH
Confidence            3469999999999999854433322      12588999999999988888864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=91.34  E-value=0.37  Score=40.01  Aligned_cols=43  Identities=16%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +++|+|||.|..+..+++.   .|    ..+++.||++|.+.+.-++++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~---~~----~~~v~~~E~~~~~~~~l~~~~~   43 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARK---GA----EGRVIAFEPLPDAYEILEENVK   43 (143)
T ss_pred             CEEEccCCccHHHHHHHHh---CC----CCEEEEEecCHHHHHHHHHHHH
Confidence            4899999999997766543   22    2379999999999887666554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=91.22  E-value=0.41  Score=45.24  Aligned_cols=98  Identities=19%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCC
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGT  234 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~  234 (320)
                      +...-.+-+|+++|||.|....-+.+.   +|+    -.+.-|+.||.|.+.-+++|-...           .   ..++
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~R---wP~----A~i~GiDsS~~Mla~Aa~rlp~~~-----------f---~~aD   83 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARR---WPD----AVITGIDSSPAMLAKAAQRLPDAT-----------F---EEAD   83 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHh---CCC----CeEeeccCCHHHHHHHHHhCCCCc-----------e---eccc
Confidence            333334569999999999988877654   343    268899999999988887774310           0   0012


Q ss_pred             CeEeecccccCCCCCCEEEEEecccccccceeE-------EEeCCeeEEEEE
Q 020840          235 PVSWHAALEQVPSGFPTIIVAHEFYDALPVHQF-------QKTTRGWCEKLV  279 (320)
Q Consensus       235 ~i~W~~sleelp~~~~~~iiANE~fDALPv~~f-------~~~~~~w~E~~V  279 (320)
                      --.|.      |....-+|+||-+|-=||=|.=       ....|+|--+.+
T Consensus        84 l~~w~------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106          84 LRTWK------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             HhhcC------CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence            22453      2222358999999988887732       234566654444

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=91.21  E-value=0.43  Score=42.83  Aligned_cols=42  Identities=21%  Similarity=0.406  Sum_probs=32.4

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      +|+|+|||.|.++..+.+..   |.    .+++-||+|+.+.+.-++++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~---~~----~~v~gid~s~~~~~~a~~~~   43 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERH---PH----LQLHGYTISPEQAEVGRERI   43 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHH
Confidence            69999999999988775532   22    46889999999877666655

>PRK04266 fibrillarin; Provisional

Probab=91.14  E-value=0.85  Score=42.36  Aligned_cols=49  Identities=14%  Similarity=0.108  Sum_probs=34.4

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .++....-+|+|+|||+|.++..+.+...       .-+++-||+|+.+.+...+.
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-------~g~V~avD~~~~ml~~l~~~  115 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-------EGVVYAVEFAPRPMRELLEV  115 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHH
Confidence            34443445999999999999887765432       12689999999876644433

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=91.07  E-value=1.1  Score=43.84  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=38.9

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .|++..++...+ .-+++++|||+|-||-..+.-        .+.+.+-+|+.|.--+.-+++..
T Consensus       151 lcL~~Le~~~~~-g~~vlDvGcGSGILaIAa~kL--------GA~~v~g~DiDp~AV~aa~eNa~  206 (300)
T COG2264         151 LCLEALEKLLKK-GKTVLDVGCGSGILAIAAAKL--------GAKKVVGVDIDPQAVEAARENAR  206 (300)
T ss_pred             HHHHHHHHhhcC-CCEEEEecCChhHHHHHHHHc--------CCceEEEecCCHHHHHHHHHHHH
Confidence            445555555554 359999999999998776542        23468889999877666666554

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=91.05  E-value=0.64  Score=43.24  Aligned_cols=43  Identities=16%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+    ..    ..+++-||+||...+.-++++.
T Consensus       121 ~~VLDiGcGsG~l~i~~~~----~g----~~~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        121 KTVLDVGCGSGILAIAAAK----LG----AKKVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             CEEEEeCCcHHHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence            5899999999998865432    11    1248999999998876666554

>TIGR00438 rrmJ cell division protein FtsJ

Probab=90.99  E-value=0.31  Score=43.03  Aligned_cols=38  Identities=13%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      ..-+|+|+|||+|.++..+.+...      ...+++.||+||.+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~------~~~~v~~vDis~~~   69 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVG------GKGRVIAVDLQPMK   69 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhC------CCceEEEEeccccc
Confidence            345899999999999888876542      12368999999864

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=90.73  E-value=1.1  Score=40.60  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ....|+|+|||.|.++..+.+.         ..+++.||+|+.+.+.-++++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~---------~~~v~~iD~s~~~~~~a~~~~   90 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL---------GADVTGIDASEENIEVARLHA   90 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---------CCeEEEEcCCHHHHHHHHHHH
Confidence            3468999999999998766542         135999999999876555544

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=90.61  E-value=0.38  Score=44.83  Aligned_cols=48  Identities=19%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ...+|+++|||+|.++..+.+.+.      ...+++.||+|+.|.+.-++++..
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~------~~~~v~~vD~s~~ML~~a~~k~~~   94 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVG------PNGKVVGVDISPGMLEVARKKLKR   94 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---------EEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCC------CccEEEEecCCHHHHHHHHHHHHh
Confidence            345999999999998887765432      223799999999999888777753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=90.47  E-value=0.79  Score=40.48  Aligned_cols=63  Identities=16%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHH---HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          142 GEMVGVWAMCLWE---QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       142 Ge~IA~~i~~~w~---~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +..+|.|+...-.   ....-...+|+|+|||.|....-+...       ....++++-|..+.+...+ ..+.
T Consensus        24 a~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~-------~~~~~Vv~TD~~~~l~~l~-~Ni~   89 (173)
T PF10294_consen   24 ALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL-------FGAARVVLTDYNEVLELLR-RNIE   89 (173)
T ss_dssp             HHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--------T-SEEEEEE-S-HHHHHH-HHHH
T ss_pred             HHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc-------cCCceEEEeccchhhHHHH-HHHH
Confidence            4456666665321   111123469999999999665544332       1234799999999554444 3443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02366 spermidine synthase

Probab=90.30  E-value=1.5  Score=42.79  Aligned_cols=72  Identities=17%  Similarity=0.341  Sum_probs=48.4

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      |..-++..---.|-|+|+.--+.     ..|.+-+|+++|+|.|.+++.++++    |..   .++.+||+++.+.+.-+
T Consensus        65 g~~q~~~~de~~Y~e~l~h~~l~-----~~~~pkrVLiIGgG~G~~~rellk~----~~v---~~V~~VEiD~~Vi~~ar  132 (308)
T PLN02366         65 GVIQLTERDECAYQEMITHLPLC-----SIPNPKKVLVVGGGDGGVLREIARH----SSV---EQIDICEIDKMVIDVSK  132 (308)
T ss_pred             CEeeecCccHHHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CCC---CeEEEEECCHHHHHHHH
Confidence            44433322234677777664332     2344568999999999998888654    322   36999999999888777


Q ss_pred             Hhcc
Q 020840          209 HNLK  212 (320)
Q Consensus       209 e~L~  212 (320)
                      +.+.
T Consensus       133 ~~f~  136 (308)
T PLN02366        133 KFFP  136 (308)
T ss_pred             Hhhh
Confidence            7664

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=90.07  E-value=1.8  Score=44.29  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=34.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+...   .|    ..+++.||+|+.+.+.-++++.
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~---~p----~a~VtAVDiS~~ALe~AreNa~  296 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALE---RP----DAFVRASDISPPALETARKNAA  296 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            38999999999998776543   22    2468999999999887777664

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=89.95  E-value=1.5  Score=40.29  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|||.|.|.=+..+.+.+.      +..+++.||.+|...+..++.+..
T Consensus        47 k~vLEIGt~~GySal~la~~l~------~~g~i~tiE~~~~~~~~A~~~~~~   92 (205)
T PF01596_consen   47 KRVLEIGTFTGYSALWLAEALP------EDGKITTIEIDPERAEIARENFRK   92 (205)
T ss_dssp             SEEEEESTTTSHHHHHHHHTST------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             ceEEEeccccccHHHHHHHhhc------ccceEEEecCcHHHHHHHHHHHHh
Confidence            3899999999999988887653      234799999999999988887754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=89.90  E-value=0.8  Score=43.47  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=32.2

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++.-+...         ..+++-||+|+...+.-+++..
T Consensus       122 ~~vLDlGcG~G~~~~~la~~---------g~~V~avD~s~~ai~~~~~~~~  163 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALL---------GFDVTAVDINQQSLENLQEIAE  163 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999988776541         1369999999998776555443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=89.90  E-value=1.1  Score=43.16  Aligned_cols=42  Identities=12%  Similarity=0.059  Sum_probs=33.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|+++.-+.+.         ..+++-||+|+...+.-++++.
T Consensus       175 ~~VLDl~cG~G~~sl~la~~---------~~~V~gvD~s~~av~~A~~n~~  216 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATP---------GMQLTGIEISAEAIACAKQSAA  216 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            48999999999998776541         1268999999999887666554

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=89.83  E-value=1.6  Score=40.39  Aligned_cols=50  Identities=18%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .+..+.--+++|+|||.|.|...+....         -++..+|+|+.-.++-++++..
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---------d~LlavDis~~Al~~Ar~Rl~~   87 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRC---------DRLLAVDISPRALARARERLAG   87 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGE---------EEEEEEES-HHHHHHHHHHTTT
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhh---------CceEEEeCCHHHHHHHHHhcCC
Confidence            3566555689999999999998864321         2589999999999888888875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=89.36  E-value=1.1  Score=44.33  Aligned_cols=43  Identities=14%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ..+|+|+|||+|.++..+++..   +.    .+++.||.|+.+.+.-+++
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~---~~----~~VtgVD~S~~mL~~A~~k  156 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHV---DA----KNVTILDQSPHQLAKAKQK  156 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHh
Confidence            3689999999999888776542   22    3699999999986655544

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=89.14  E-value=0.58  Score=42.72  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=34.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .+++|+|||+|.++...|...        ..+++.||+++...+.-+++++.
T Consensus        55 ~~vLDl~~GsG~l~l~~lsr~--------a~~V~~vE~~~~a~~~a~~Nl~~   98 (199)
T PRK10909         55 ARCLDCFAGSGALGLEALSRY--------AAGATLLEMDRAVAQQLIKNLAT   98 (199)
T ss_pred             CEEEEcCCCccHHHHHHHHcC--------CCEEEEEECCHHHHHHHHHHHHH
Confidence            489999999999997654321        13799999999998877776643

>PRK01581 speE spermidine synthase; Validated

Probab=89.01  E-value=1.9  Score=43.32  Aligned_cols=59  Identities=20%  Similarity=0.344  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      -+|=|+|+.=.+.     ..+.+-+|+++|+|.|..++.+|++    +.   ..++++||++|.+.+.-++
T Consensus       134 ~iYHE~Lvhp~m~-----~h~~PkrVLIIGgGdG~tlrelLk~----~~---v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        134 QIYHEALVHPIMS-----KVIDPKRVLILGGGDGLALREVLKY----ET---VLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             HHHHHHHHHHHHH-----hCCCCCEEEEECCCHHHHHHHHHhc----CC---CCeEEEEeCCHHHHHHHHh
Confidence            4688888774431     2334459999999999988777763    21   2369999999998877664

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=88.93  E-value=1.1  Score=41.10  Aligned_cols=36  Identities=28%  Similarity=0.323  Sum_probs=26.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      -+|+++|||.|+|+..+.+.        ..++-+=||+++....
T Consensus        15 srVLDLGCGdG~LL~~L~~~--------k~v~g~GvEid~~~v~   50 (193)
T PF07021_consen   15 SRVLDLGCGDGELLAYLKDE--------KQVDGYGVEIDPDNVA   50 (193)
T ss_pred             CEEEecCCCchHHHHHHHHh--------cCCeEEEEecCHHHHH
Confidence            49999999999987655442        1246788999987543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=88.82  E-value=3.1  Score=38.00  Aligned_cols=63  Identities=19%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             CCChhHHHHHHHHHHHHHH-----HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          134 SPEVSQMFGEMVGVWAMCL-----WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       134 SpEIsp~FGe~IA~~i~~~-----w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      .|+....|..+.+..-...     ......+..-+||++|+|.|.++..+++.   +|+    +++++.|.-..+
T Consensus        69 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp~v~  136 (241)
T PF00891_consen   69 DPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARA---YPN----LRATVFDLPEVI  136 (241)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHH---STT----SEEEEEE-HHHH
T ss_pred             ChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHH---CCC----CcceeeccHhhh
Confidence            3566667766665543211     12233344458999999999999988754   454    478888884444

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=88.75  E-value=0.75  Score=40.80  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=27.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      -+|+|+|||+|.++..+.+..        ...++-||+|+.+.+.-
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~--------~~~~~giD~s~~~i~~a   52 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEK--------QVRGYGIEIDQDGVLAC   52 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhcc--------CCcEEEEeCCHHHHHHH
Confidence            489999999999876554321        12467899999876544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK06922 hypothetical protein; Provisional

Probab=88.74  E-value=0.99  Score=48.53  Aligned_cols=43  Identities=14%  Similarity=0.227  Sum_probs=32.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .+|+|+|||+|.++..+.+.   .|    ..+++-||+|+.+.+..++++
T Consensus       420 ~rVLDIGCGTG~ls~~LA~~---~P----~~kVtGIDIS~~MLe~Ararl  462 (677)
T PRK06922        420 DTIVDVGAGGGVMLDMIEEE---TE----DKRIYGIDISENVIDTLKKKK  462 (677)
T ss_pred             CEEEEeCCCCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHh
Confidence            58999999999987665443   33    357999999999877666554

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=88.65  E-value=0.69  Score=42.16  Aligned_cols=35  Identities=14%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp  201 (320)
                      .-.|+|+|||+|.++.-+++...      ....++-||+++
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~------~~~~V~aVDi~~   86 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIG------DKGRVIACDILP   86 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcC------CCceEEEEeccc
Confidence            34899999999999888876542      123689999998

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=88.59  E-value=0.97  Score=47.50  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      ..|+++|-..+++.--.........|.=+|||||-|...+|++.+...   .+++.++||.+|.-
T Consensus       346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~---RkVklyavEKNPNA  407 (649)
T KOG0822|consen  346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD---RKVKLYAVEKNPNA  407 (649)
T ss_pred             HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc---CceEEEEEecCcch
Confidence            467888877776653222222256888999999999999999987532   47899999999975

>TIGR00452 methyltransferase, putative

Probab=88.55  E-value=1.7  Score=42.48  Aligned_cols=37  Identities=14%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      .-+|+|+|||+|.++..++..   .+     -.++-||+|+.+..
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~---g~-----~~v~GiDpS~~ml~  158 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGH---GA-----KSLVGIDPTVLFLC  158 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHH
Confidence            358999999999998776542   11     25889999997754

Known examples to date are restricted to the proteobacteria.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=88.46  E-value=1.6  Score=40.53  Aligned_cols=46  Identities=13%  Similarity=0.076  Sum_probs=36.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|+|+|.-+.-+.+.+..      ..+++.||+++...+.-++.+..
T Consensus        70 ~~vLEiGt~~G~s~l~la~~~~~------~g~v~tiD~d~~~~~~A~~n~~~  115 (234)
T PLN02781         70 KNTLEIGVFTGYSLLTTALALPE------DGRITAIDIDKEAYEVGLEFIKK  115 (234)
T ss_pred             CEEEEecCcccHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence            38999999999977777665421      24799999999998888877754

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=88.42  E-value=1.4  Score=42.07  Aligned_cols=52  Identities=27%  Similarity=0.355  Sum_probs=42.5

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +|...--+|+|.|.|+|.|+..+++++....      +++.+|+-+...+.-+++|..
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G------~v~tyE~r~d~~k~A~~Nl~~  141 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEG------HVTTYEIREDFAKTARENLSE  141 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCc------eEEEEEecHHHHHHHHHHHHH
Confidence            4554456999999999999999999875432      578899999999988888875

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=88.34  E-value=1.2  Score=45.03  Aligned_cols=41  Identities=17%  Similarity=0.089  Sum_probs=30.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      -.++|||||+|.++..+.+.   .|+    ..++-||+++.+.+.-.+
T Consensus       124 p~vLEIGcGsG~~ll~lA~~---~P~----~~~iGIEI~~~~i~~a~~  164 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKN---NPN----KLFIGIEIHTPSIEQVLK  164 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHh---CCC----CCEEEEECCHHHHHHHHH
Confidence            38999999999987666443   354    369999999887554433

>PLN02823 spermine synthase

Probab=87.89  E-value=2.7  Score=41.50  Aligned_cols=72  Identities=15%  Similarity=0.259  Sum_probs=49.0

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      |+.-++..---.|=|+++.-.+.     -.|.+-+|+.+|+|.|.+++.+|++-       ...++++||+.|.+.+.-+
T Consensus        77 g~~qs~~~de~~YhE~l~h~~l~-----~~~~pk~VLiiGgG~G~~~re~l~~~-------~~~~v~~VEiD~~vv~lar  144 (336)
T PLN02823         77 GKMQSAEADEFVYHESLVHPALL-----HHPNPKTVFIMGGGEGSTAREVLRHK-------TVEKVVMCDIDQEVVDFCR  144 (336)
T ss_pred             CccccccchHHHHHHHHHhHHHh-----hCCCCCEEEEECCCchHHHHHHHhCC-------CCCeEEEEECCHHHHHHHH
Confidence            44444322223577777654432     23344589999999999998888631       1236999999999999888


Q ss_pred             Hhcc
Q 020840          209 HNLK  212 (320)
Q Consensus       209 e~L~  212 (320)
                      +.+.
T Consensus       145 ~~~~  148 (336)
T PLN02823        145 KHLT  148 (336)
T ss_pred             Hhcc
Confidence            8774

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=87.57  E-value=1.6  Score=42.16  Aligned_cols=73  Identities=18%  Similarity=0.281  Sum_probs=52.7

Q ss_pred             eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .-|+-.-.-.+-|+++.-.+..+   +.|  -+|+-||.|.|.+++-+|++..       --+.++||+.|...+..++.
T Consensus        52 ~q~~e~de~~yhEml~h~~~~ah---~~p--k~VLiiGgGdG~tlRevlkh~~-------ve~i~~VEID~~Vi~~ar~~  119 (282)
T COG0421          52 VQLTERDEFIYHEMLAHVPLLAH---PNP--KRVLIIGGGDGGTLREVLKHLP-------VERITMVEIDPAVIELARKY  119 (282)
T ss_pred             hhhccchhHHHHHHHHhchhhhC---CCC--CeEEEECCCccHHHHHHHhcCC-------cceEEEEEcCHHHHHHHHHh
Confidence            33444455677777765443221   333  4999999999999999988642       12699999999999999999


Q ss_pred             ccccc
Q 020840          211 LKCMD  215 (320)
Q Consensus       211 L~~~~  215 (320)
                      |....
T Consensus       120 l~~~~  124 (282)
T COG0421         120 LPEPS  124 (282)
T ss_pred             ccCcc
Confidence            86543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=87.55  E-value=5.6  Score=39.08  Aligned_cols=49  Identities=18%  Similarity=0.216  Sum_probs=36.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .+++|++|-||.|+   +||+.+.+.|..  ..++.++|.||...+.=++.++.
T Consensus       135 ~pvrIlDIAaG~GR---YvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~  183 (311)
T PF12147_consen  135 RPVRILDIAAGHGR---YVLDALEKHPER--PDSILLRDYSPINVEKGRALIAE  183 (311)
T ss_pred             CceEEEEeccCCcH---HHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHH
Confidence            56999999999999   566666666543  34789999999997766555543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=87.51  E-value=1.5  Score=44.36  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+.+..++.+..   .......|+|+|||+|+++.-+.+..         .+++-||+|+.+.+.-++++.
T Consensus       282 ~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---------~~V~gvD~s~~al~~A~~n~~  340 (443)
T PRK13168        282 NQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---------AEVVGVEGVEAMVERARENAR  340 (443)
T ss_pred             HHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence            444555554432   21223589999999999988765431         268999999999876666553

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=87.48  E-value=1.2  Score=41.59  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||.|.++..+.+...      ...+++.||+|+.+.+.-+++..
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g------~~~~v~gvD~s~~~l~~A~~~~~  123 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVG------PTGKVIGVDMTPEMLAKARANAR  123 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhC------CCCEEEEECCCHHHHHHHHHHHH
Confidence            35999999999998775544321      22368999999999887666543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=87.07  E-value=1.4  Score=44.50  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      -.|+|+|||.|.++..+.+..         -+++-||+|+.+.+.-+
T Consensus        39 ~~vLDlGcG~G~~~~~la~~~---------~~v~giD~s~~~l~~a~   76 (475)
T PLN02336         39 KSVLELGAGIGRFTGELAKKA---------GQVIALDFIESVIKKNE   76 (475)
T ss_pred             CEEEEeCCCcCHHHHHHHhhC---------CEEEEEeCCHHHHHHHH
Confidence            489999999999999876531         15899999999876433

>PRK03612 spermidine synthase; Provisional

Probab=87.00  E-value=2.2  Score=44.30  Aligned_cols=59  Identities=20%  Similarity=0.330  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      ..|.|+++.-.+     ...|.+-+|+++|+|.|.++..++++    |..   .+++.||++|.+.+.-++
T Consensus       281 ~~y~e~l~~~~l-----~~~~~~~rVL~IG~G~G~~~~~ll~~----~~v---~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        281 YRYHEALVHPAM-----AASARPRRVLVLGGGDGLALREVLKY----PDV---EQVTLVDLDPAMTELART  339 (521)
T ss_pred             HHHHHHHHHHHH-----hhCCCCCeEEEEcCCccHHHHHHHhC----CCc---CeEEEEECCHHHHHHHHh
Confidence            356776653211     11234458999999999999888753    221   379999999999998887

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=86.64  E-value=2.1  Score=39.43  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      +..|||+.-..+..+.+..+..+.-.+++||+|.|......--...    +   -+.+=||+.+.+.+..++
T Consensus        20 ~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~----~---~~~~GIEi~~~~~~~a~~   84 (205)
T PF08123_consen   20 SETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTG----C---KKSVGIEILPELHDLAEE   84 (205)
T ss_dssp             CCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---------SEEEEEE-SHHHHHHHHH
T ss_pred             CcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC----C---cEEEEEEechHHHHHHHH
Confidence            3468888888888888877766567999999999997655432211    1   136789999998765544

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=86.54  E-value=1.7  Score=42.89  Aligned_cols=41  Identities=20%  Similarity=0.217  Sum_probs=32.7

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .++|+|||+|+++.-+-+..         -+++.||+|+.+.+..++++.
T Consensus       200 ~vlDl~~G~G~~sl~la~~~---------~~v~~vE~~~~av~~a~~n~~  240 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNF---------RRVLATEIAKPSVNAAQYNIA  240 (353)
T ss_pred             cEEEEeccccHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHHH
Confidence            69999999999998544331         169999999999887777664

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=86.39  E-value=1.7  Score=43.08  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=32.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|+++.-+...         ..+++.||+|+...+.-++++.
T Consensus       235 ~~vLDL~cG~G~~~l~la~~---------~~~v~~vE~~~~av~~a~~N~~  276 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGP---------DTQLTGIEIESEAIACAQQSAQ  276 (374)
T ss_pred             CEEEEccCCccHHHHHHhhc---------CCeEEEEECCHHHHHHHHHHHH
Confidence            38999999999998766531         1268999999999887776654

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04148 hypothetical protein; Provisional

Probab=86.14  E-value=2.4  Score=36.73  Aligned_cols=55  Identities=13%  Similarity=0.176  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchh-HHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGT-LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       144 ~IA~~i~~~w~~~g~p~~l~IvEiGaG~Gt-La~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .||.|+.+.....   +..+|+|+|+|.|. +|. .|...        ..+++.||++|...+.-++.
T Consensus         3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~-~L~~~--------G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148          3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAK-KLKES--------GFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             HHHHHHHHhcccc---cCCEEEEEEecCCHHHHH-HHHHC--------CCEEEEEECCHHHHHHHHHh
Confidence            4666665544221   23589999999996 544 44321        13699999999976644443

>PTZ00146 fibrillarin; Provisional

Probab=85.83  E-value=1.8  Score=42.10  Aligned_cols=38  Identities=18%  Similarity=0.091  Sum_probs=29.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      .-+|+|+|||+|+++..+.+.+...      -.++-||+|+.+.
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~------G~VyAVD~s~r~~  170 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPE------GVVYAVEFSHRSG  170 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCC------CEEEEEECcHHHH
Confidence            3589999999999999988865321      2588899998754

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=85.68  E-value=2  Score=38.97  Aligned_cols=40  Identities=15%  Similarity=0.304  Sum_probs=28.0

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      .+||||||.|.++..+..   .+|+    ..|.-||++......-.+
T Consensus        20 l~lEIG~G~G~~l~~~A~---~~Pd----~n~iGiE~~~~~v~~a~~   59 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAK---RNPD----INFIGIEIRKKRVAKALR   59 (195)
T ss_dssp             EEEEET-TTSHHHHHHHH---HSTT----SEEEEEES-HHHHHHHHH
T ss_pred             eEEEecCCCCHHHHHHHH---HCCC----CCEEEEecchHHHHHHHH
Confidence            899999999998776543   4565    369999999876554433

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=85.58  E-value=2.2  Score=40.58  Aligned_cols=44  Identities=23%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..-+|+|+|||+|+++..+++.   +|+    ++++.+|. |...+.-++++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~---~p~----~~~~~~D~-~~~~~~a~~~~  192 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKH---FPE----LDSTILNL-PGAIDLVNENA  192 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHH---CCC----CEEEEEec-HHHHHHHHHHH
Confidence            3459999999999999888775   343    46888997 44444434444

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=84.99  E-value=5  Score=38.98  Aligned_cols=64  Identities=16%  Similarity=0.147  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +|+=..-+-...++++..+--+|+|||||-|.||.-..+.       | ..+++-|..|+...+.-++++.+
T Consensus        54 ~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~-------y-~v~V~GvTlS~~Q~~~~~~r~~~  117 (283)
T COG2230          54 EEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE-------Y-GVTVVGVTLSEEQLAYAEKRIAA  117 (283)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH-------c-CCEEEEeeCCHHHHHHHHHHHHH
Confidence            4443334444566666655579999999999998765443       1 24688999999888777776654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=84.85  E-value=3.3  Score=39.29  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=37.3

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++...--+|+|.|.|+|.|...+++++...      -+++-.|..+...+.-++.+..
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~------G~v~t~E~~~~~~~~A~~n~~~   87 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPT------GHVYTYEFREDRAEKARKNFER   87 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTT------SEEEEEESSHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCC------eEEEccccCHHHHHHHHHHHHH
Confidence            444333599999999999999999998532      3578899999888877777754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=84.50  E-value=2.6  Score=41.71  Aligned_cols=58  Identities=22%  Similarity=0.210  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+.+..++......  .+  -.++|++||+|+++..+.+..         -+++.||+|+...+..++++.
T Consensus       192 ~e~l~~~v~~~~~~--~~--~~vLDl~~G~G~~sl~la~~~---------~~v~~vE~~~~ai~~a~~N~~  249 (362)
T PRK05031        192 NEKMLEWALDATKG--SK--GDLLELYCGNGNFTLALARNF---------RRVLATEISKPSVAAAQYNIA  249 (362)
T ss_pred             HHHHHHHHHHHhhc--CC--CeEEEEeccccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence            44555555443321  11  369999999999998555432         158999999999887777654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=84.42  E-value=3  Score=41.82  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||.|+++.-+.+..         -+++-||+|+.+.+.-++++.
T Consensus       294 ~~vLDl~cG~G~~sl~la~~~---------~~V~~vE~~~~av~~a~~n~~  335 (431)
T TIGR00479       294 ELVVDAYCGVGTFTLPLAKQA---------KSVVGIEVVPESVEKAQQNAE  335 (431)
T ss_pred             CEEEEcCCCcCHHHHHHHHhC---------CEEEEEEcCHHHHHHHHHHHH
Confidence            489999999999998765431         258999999999887766654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=84.14  E-value=1.4  Score=41.51  Aligned_cols=47  Identities=13%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCccc---ceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE---SLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~---~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +|...+..++|+|||+|+.-.           +|.   ..+++.||++|.+.+.-.+..++
T Consensus        72 ~gk~~K~~vLEvgcGtG~Nfk-----------fy~~~p~~svt~lDpn~~mee~~~ks~~E  121 (252)
T KOG4300|consen   72 LGKSGKGDVLEVGCGTGANFK-----------FYPWKPINSVTCLDPNEKMEEIADKSAAE  121 (252)
T ss_pred             hcccCccceEEecccCCCCcc-----------cccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence            355667899999999998421           333   45899999999999988776654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=83.33  E-value=1.8  Score=42.21  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=28.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      -+|+|+|||+|.++..++..   .+.     .++-||+|+.+..
T Consensus       124 ~~VLDIGCG~G~~~~~la~~---g~~-----~V~GiD~S~~~l~  159 (322)
T PRK15068        124 RTVLDVGCGNGYHMWRMLGA---GAK-----LVVGIDPSQLFLC  159 (322)
T ss_pred             CEEEEeccCCcHHHHHHHHc---CCC-----EEEEEcCCHHHHH
Confidence            58999999999999877653   121     4889999997653

>TIGR00095 RNA methyltransferase, RsmD family

Probab=83.32  E-value=1.8  Score=38.97  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+++|++||+|.++...+..-        +-+++.||.++...+.-++.+.
T Consensus        51 ~~vLDLfaGsG~lglea~srg--------a~~v~~vE~~~~a~~~~~~N~~   93 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRG--------AKVAFLEEDDRKANQTLKENLA   93 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Confidence            489999999999998877531        1258999999988876666654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=83.29  E-value=4.6  Score=38.47  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+-+|+++|+|.||-+-.+.+.+.   .   ..+|+.||.|+.+.+.=+..+.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~---~---~~~~~~vd~s~~~~~l~~~l~~   79 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWP---S---LKEYTCVDRSPEMLELAKRLLR   79 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhc---C---ceeeeeecCCHHHHHHHHHHHh
Confidence            456999999999997655555443   2   2379999999999887666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=83.24  E-value=4.4  Score=39.27  Aligned_cols=66  Identities=9%  Similarity=0.036  Sum_probs=40.8

Q ss_pred             eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      |+++..+.+-.+.    .++.+.   +....-.|+|.|||+|+++.....    .     ...++-+|+++.+.+.-+++
T Consensus       160 ~~~~~~l~~~la~----~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~----~-----~~~v~g~Di~~~~~~~a~~n  223 (329)
T TIGR01177       160 FFKPGSMDPKLAR----AMVNLA---RVTEGDRVLDPFCGTGGFLIEAGL----M-----GAKVIGCDIDWKMVAGARIN  223 (329)
T ss_pred             ccCCCCCCHHHHH----HHHHHh---CCCCcCEEEECCCCCCHHHHHHHH----h-----CCeEEEEcCCHHHHHHHHHH
Confidence            5555555554444    443321   222234899999999998644221    1     13688999999987766666


Q ss_pred             cc
Q 020840          211 LK  212 (320)
Q Consensus       211 L~  212 (320)
                      +.
T Consensus       224 l~  225 (329)
T TIGR01177       224 LE  225 (329)
T ss_pred             HH
Confidence            64

This family is found exclusively in the Archaea.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=83.15  E-value=4.9  Score=38.40  Aligned_cols=100  Identities=15%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND  221 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~  221 (320)
                      .++=.+-+..+.++++....-+|+|||||-|.++..+.+..        .++++-|.+|+.-.+.-++++....  +.+ 
T Consensus        44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--------g~~v~gitlS~~Q~~~a~~~~~~~g--l~~-  112 (273)
T PF02353_consen   44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--------GCHVTGITLSEEQAEYARERIREAG--LED-  112 (273)
T ss_dssp             HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHCST--SSS-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--------CcEEEEEECCHHHHHHHHHHHHhcC--CCC-
Confidence            34444444445556665545699999999999999877653        2468889999887765555554311  100 


Q ss_pred             ccchhhhcccCCCCeEeecccccCCCCCCEEEEEecccccccce
Q 020840          222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       222 ~~~~~~~~~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv~  265 (320)
                                 ...|.. .+..+++.. .=-|++-|.|-.++..
T Consensus       113 -----------~v~v~~-~D~~~~~~~-fD~IvSi~~~Ehvg~~  143 (273)
T PF02353_consen  113 -----------RVEVRL-QDYRDLPGK-FDRIVSIEMFEHVGRK  143 (273)
T ss_dssp             -----------TEEEEE-S-GGG---S--SEEEEESEGGGTCGG
T ss_pred             -----------ceEEEE-eeccccCCC-CCEEEEEechhhcChh
Confidence                       012222 122344443 2258888999999753

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=82.49  E-value=3.6  Score=38.60  Aligned_cols=74  Identities=23%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|+.-++-.--..|-|+|+...+.     ..|.+-+|+-||.|.|.+++.++++    +.   -.++.+||+.|...+..
T Consensus        49 dg~~q~~e~de~~y~e~l~h~~~~-----~~~~p~~VLiiGgG~G~~~~ell~~----~~---~~~i~~VEiD~~Vv~~a  116 (246)
T PF01564_consen   49 DGDVQLSERDEFIYHEMLVHPPLL-----LHPNPKRVLIIGGGDGGTARELLKH----PP---VESITVVEIDPEVVELA  116 (246)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHHH-----HSSST-EEEEEESTTSHHHHHHTTS----TT----SEEEEEES-HHHHHHH
T ss_pred             CCeEEEEEechHHHHHHHhhhHhh-----cCCCcCceEEEcCCChhhhhhhhhc----CC---cceEEEEecChHHHHHH
Confidence            455444433335677887755442     2344569999999999988877653    21   13799999999999988


Q ss_pred             HHhccc
Q 020840          208 HHNLKC  213 (320)
Q Consensus       208 ~e~L~~  213 (320)
                      ++.+..
T Consensus       117 ~~~f~~  122 (246)
T PF01564_consen  117 RKYFPE  122 (246)
T ss_dssp             HHHTHH
T ss_pred             HHhchh
Confidence            887653

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=82.12  E-value=3.5  Score=38.61  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=27.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      ..+||||+|+|++...+   .+++|+.    .|.=||+...-..
T Consensus        50 pi~lEIGfG~G~~l~~~---A~~nP~~----nfiGiEi~~~~v~   86 (227)
T COG0220          50 PIVLEIGFGMGEFLVEM---AKKNPEK----NFLGIEIRVPGVA   86 (227)
T ss_pred             cEEEEECCCCCHHHHHH---HHHCCCC----CEEEEEEehHHHH
Confidence            38999999999976665   3456764    5899999865544

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=81.55  E-value=2.6  Score=40.04  Aligned_cols=78  Identities=17%  Similarity=0.304  Sum_probs=49.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeec-
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA-  240 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~-  240 (320)
                      ++|+++|||-|.|+.-+-+.    .     .+++-||+|+.+.+.-+..-..                  .+..+.|-. 
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~----G-----a~VtgiD~se~~I~~Ak~ha~e------------------~gv~i~y~~~  113 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARL----G-----ASVTGIDASEKPIEVAKLHALE------------------SGVNIDYRQA  113 (243)
T ss_pred             CeEEEecCCccHhhHHHHHC----C-----CeeEEecCChHHHHHHHHhhhh------------------ccccccchhh
Confidence            69999999999877765442    1     3689999999987755432221                  122333321 


Q ss_pred             ccccCCC--CCCEEEEEeccccccccee
Q 020840          241 ALEQVPS--GFPTIIVAHEFYDALPVHQ  266 (320)
Q Consensus       241 sleelp~--~~~~~iiANE~fDALPv~~  266 (320)
                      ..+++-.  +..=+|+++|++--+|--.
T Consensus       114 ~~edl~~~~~~FDvV~cmEVlEHv~dp~  141 (243)
T COG2227         114 TVEDLASAGGQFDVVTCMEVLEHVPDPE  141 (243)
T ss_pred             hHHHHHhcCCCccEEEEhhHHHccCCHH
Confidence            1233322  2346999999998887544

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=81.25  E-value=1.7  Score=41.58  Aligned_cols=59  Identities=19%  Similarity=0.387  Sum_probs=41.0

Q ss_pred             HHHHHHHHHc-CCCCc--ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          147 VWAMCLWEQM-GQPNR--VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       147 ~~i~~~w~~~-g~p~~--l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      +|+...+-.+ ..+++  .+|+|+|||-|.....||+.-..     .++.++-.+.||.-.++-++.
T Consensus        55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n-----~~l~v~acDfsp~Ai~~vk~~  116 (264)
T KOG2361|consen   55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN-----NRLKVYACDFSPRAIELVKKS  116 (264)
T ss_pred             HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCC-----CCeEEEEcCCChHHHHHHHhc
Confidence            4555555443 22222  38999999999999999876432     246788999999887765553

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=80.05  E-value=3.6  Score=40.50  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=30.8

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|||||+|-   |+..+.+...     -.|+-||+|..-.+.-+++.
T Consensus        62 ~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   62 PGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHH
Confidence            45799999999998   8888876422     25899999987766555555

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
1zkd_A	387	X-ray Structure Of The Putative Protein Q6n1p6 From		7e-37
4f3n_A	432	High Resolution Native Crystal Structure Of An Unch		5e-10

>pdb|1ZKD|A Chain A, X-ray Structure Of The Putative Protein Q6n1p6 From Rhodopseudomonas Palustris At The Resolution 2.1 A , Northeast Structural Genomics Consortium Target Rpr58 Length = 387

Iteration: 1
 Score =  150 bits (380), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 113/205 (55%), Gaps = 21/205 (10%)
Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP  V  Y E  L +P+ G+Y+ RD  G EGDF TSPE+SQ FG
Sbjct: 4   QTALATEIKRLIK-AAGPXPVWRYXELCLGHPEHGYYVTRDPLGREGDFTTSPEISQXFG 62
Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT  AD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTXXADALRALRVLPILYQSLSVHLVEINPV 122
Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIRN-------------------IHWHDSFEDVPEG-PAVILANEYFDVL 162
Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSL 287
           P+HQ  K   GW E++++I     L
Sbjct: 163 PIHQAIKRETGWHERVIEIGASGEL 187

>pdb|4F3N|A Chain A, High Resolution Native Crystal Structure Of An Uncharacterized Acr, Cog1565 Superfamily Protein From Burkholderia Thailandensis, Solved By Iodide Ion Sad Length = 432

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 27/201 (13%)
Query: 86  LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN-RDVFGAEGD----FITSPEVSQM 140
           L   L+  I   GG I  + YME VL  P  G+Y      FG   D    F+T+PE+S +
Sbjct: 61  LAASLRAEIASAGGWIPFSRYMERVLYAPGMGYYSGGAQKFGRRADDGSDFVTAPELSPL 120
Query: 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200
           F + +   A  + + +       ++E G G G L A LL   +      E     +V+ S
Sbjct: 121 FAQTL---ARPVAQALDASGTRRVMEFGAGTGKLAAGLL--TALAALGVELDEYAIVDLS 175
Query: 201 PTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             L+  Q   L       A                V W   L+ +P  F  ++V +E  D
Sbjct: 176 GELRARQRETLGAQAPGLA--------------ARVRW---LDALPERFEGVVVGNEVLD 218
Query: 261 ALPVHQFQKTTRGWCEKLVDI 281
           A+PV    K  RGWCE+ V I
Sbjct: 219 AMPVRLVAKQARGWCERGVSI 239

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	3e-87
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	2e-74

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 Length = 387

 Score =  266 bits (681), Expect = 3e-87
 Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 21/210 (10%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 4   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 62

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 122

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 162

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSLHQQLS 292
           P+HQ  K   GW E++++I     L   ++
Sbjct: 163 PIHQAIKRETGWHERVIEIGASGELVFGVA 192

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} Length = 432

 Score =  234 bits (599), Expect = 2e-74
 Identities = 58/247 (23%), Positives = 87/247 (35%), Gaps = 40/247 (16%)

Query: 59  ASTAISIDRSGLYNPPEHSHERKLES-------------ELVKHLKGIIKFRGGPISVAE 105
           +  +     + +YN   +    +  S              L   L+  I   GG I  + 
Sbjct: 21  SMVSQVSAGTVIYNAGMNPKAHEPASLPVPGPDALAQSEALAASLRAEIASAGGWIPFSR 80

Query: 106 YMEEVLTNPKAGFYINRDV-----FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPN 160
           YME VL  P  G+Y               DF+T+PE+S +F + +        +  G   
Sbjct: 81  YMERVLYAPGMGYYSGGAQKFGRRADDGSDFVTAPELSPLFAQTLARPVAQALDASGTRR 140

Query: 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAN 220
              ++E G G G L A LL   +            +V+ S  L+  Q   L         
Sbjct: 141 ---VMEFGAGTGKLAAGLLTALAALGVE--LDEYAIVDLSGELRARQRETLGAQAPG--- 192

Query: 221 DNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVD 280
                          V W  AL   P  F  ++V +E  DA+PV    K  RGWCE+ V 
Sbjct: 193 -----------LAARVRWLDAL---PERFEGVVVGNEVLDAMPVRLVAKQARGWCERGVS 238

Query: 281 IAEDSSL 287
           I +  + 
Sbjct: 239 IDDAGAF 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	100.0
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.76
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.89
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.88
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.85
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.83
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.77
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.7
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.68
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.67
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.63
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.62
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.51
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.49
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.4
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.36
3lcc_A	235	Putative methyl chloride transferase; halide methy	96.34
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.26
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.24
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.23
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	96.2
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.16
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.16
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.13
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.12
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.11
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.09
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	96.08
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.05
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	96.04
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.03
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.03
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.02
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.0
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.98
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	95.95
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.91
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	95.9
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.88
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.88
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.87
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.87
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	95.79
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	95.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	95.78
3lkd_A	542	Type I restriction-modification system methyltrans	95.78
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.76
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	95.75
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.75
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	95.73
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.72
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.72
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	95.7
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	95.69
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	95.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	95.67
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	95.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.62
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.61
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.6
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.6
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.59
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.58
3khk_A	544	Type I restriction-modification system methylation	95.54
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.54
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.53
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	95.53
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	95.53
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.53
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	95.51
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.5
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.49
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.46
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.45
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.42
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.42
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.41
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	95.33
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.31
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.22
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	95.21
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.21
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	95.2
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	95.16
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	95.15
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.15
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.11
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.1
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	95.08
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	95.05
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.03
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.03
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.02
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	95.0
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	94.99
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	94.97
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	94.95
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	94.95
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	94.91
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	94.91
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.9
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	94.9
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	94.88
1ws6_A	171	Methyltransferase; structural genomics, riken stru	94.88
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	94.86
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	94.81
3ocj_A	305	Putative exported protein; structural genomics, PS	94.79
2esr_A	177	Methyltransferase; structural genomics, hypothetic	94.78
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	94.76
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	94.75
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	94.74
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	94.72
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	94.71
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	94.71
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	94.69
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.68
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	94.66
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	94.66
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	94.64
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	94.6
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	94.57
1xxl_A	239	YCGJ protein; structural genomics, protein structu	94.54
2b25_A	336	Hypothetical protein; structural genomics, methyl	94.53
2o07_A	304	Spermidine synthase; structural genomics, structur	94.51
2i7c_A	283	Spermidine synthase; transferase, structural genom	94.49
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	94.49
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	94.48
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	94.47
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	94.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	94.46
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	94.45
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	94.43
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	94.43
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	94.38
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.37
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.36
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	94.36
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	94.35
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	94.35
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	94.34
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	94.33
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.32
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	94.32
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	94.29
3cc8_A	230	Putative methyltransferase; structural genomics, j	94.28
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	94.27
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	94.25
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	94.23
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	94.22
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.16
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	94.13
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.12
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.06
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	94.06
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	94.0
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	93.9
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	93.9
2pt6_A	321	Spermidine synthase; transferase, structural genom	93.88
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	93.84
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	93.84
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.84
2b3t_A	276	Protein methyltransferase HEMK; translation termin	93.82
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	93.77
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	93.76
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	93.74
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	93.71
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	93.7
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	93.69
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	93.68
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	93.67
2h00_A	254	Methyltransferase 10 domain containing protein; st	93.65
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	93.62
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	93.61
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	93.61
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	93.47
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	93.46
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	93.45
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	93.3
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	93.27
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	93.26
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	93.23
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	93.19
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	93.06
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	93.02
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	93.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	92.91
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	92.9
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	92.89
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	92.82
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	92.82
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	92.63
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	92.48
3lpm_A	259	Putative methyltransferase; structural genomics, p	92.47
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	92.44
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	92.42
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	92.38
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	92.31
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	92.3
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	92.18
3ufb_A	530	Type I restriction-modification system methyltran	92.16
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	92.08
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	92.0
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	92.0
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	91.98
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	91.93
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	91.92
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	91.91
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	91.85
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	91.52
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	91.12
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	91.1
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	91.04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	90.83
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	90.73
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	90.71
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	90.65
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	90.65
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	90.44
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	90.42
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	90.31
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	90.11
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	90.1
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	90.03
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	89.97
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	89.91
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	89.59
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	89.53
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	89.16
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	88.99
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	88.91
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	88.91
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	88.89
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	88.33
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	88.3
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	88.05
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	87.89
2frn_A	278	Hypothetical protein PH0793; structural genomics,	87.66
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	87.65
2zig_A	297	TTHA0409, putative modification methylase; methylt	87.59
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	87.55
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	87.12
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	86.29
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	86.22
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	85.03
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	84.98
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	84.71
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	84.48
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	84.15
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	82.7
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	81.25
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	81.17
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	80.58

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=100.00  E-value=6.8e-60  Score=463.22  Aligned_cols=197  Identities=40%  Similarity=0.789  Sum_probs=177.4

Q ss_pred             chHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCc
Q 020840           82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNR  161 (320)
Q Consensus        82 ~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~  161 (320)
                      +++.|.++|+++|+.+ |||||++||++|||||++|||+++++||+.|||||||||||+|||+||+|++++|+.+|.|.+
T Consensus         3 ~~~~L~~~i~~~I~~~-G~i~f~~fM~~aLy~P~~GYY~~~~~~G~~GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~   81 (387)
T 1zkd_A            3 DQTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT   81 (387)
T ss_dssp             CSSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             chHHHHHHHHHHHHhc-CCeeHHHHHHHHhcCCCCcccCCCCCCCCCCCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3567999999999986 899999999999999999999998899999999999999999999999999999999999999


Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeecc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA  241 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~s  241 (320)
                      ++|||+|||+|+||.|||++++..|+++.+++|+|||+||.|+++|+++|+..                   .+|.|+++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-------------------~~v~W~~~  142 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-------------------RNIHWHDS  142 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-------------------SSEEEESS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-------------------CCeEEeCC
Confidence            99999999999999999999998899999999999999999999999999741                   16999999


Q ss_pred             cccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEEEeecCCCccc
Q 020840          242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAAS  299 (320)
Q Consensus       242 leelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~v~~p~~~~~~  299 (320)
                      ++++|.+ +|||||||||||||||+|++++++|+|++|+++++|+|.|+..|.+++..
T Consensus       143 l~~lp~~-~~~viANE~fDAlPv~~~~~~~~~w~E~~V~~~~~g~~~~~~~~~~~~~~  199 (387)
T 1zkd_A          143 FEDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGF  199 (387)
T ss_dssp             GGGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTC
T ss_pred             hhhcCCC-CeEEEeccccccCceEEEEecCCeEEEEEEEECCCCcEEEecCCCCchhh
Confidence            9999987 99999999999999999999999999999999888889999998777643

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=100.00  E-value=1.8e-55  Score=436.69  Aligned_cols=194  Identities=29%  Similarity=0.476  Sum_probs=164.1

Q ss_pred             chHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCC-CCCC----CCCCeecCCChhHHHHHHHHHHHHHHHHHc
Q 020840           82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINR-DVFG----AEGDFITSPEVSQMFGEMVGVWAMCLWEQM  156 (320)
Q Consensus        82 ~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~-~~~G----~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~  156 (320)
                      .++.|.++|+++|++.+|||||++||++|||||++|||+++ ++||    ++|||||||||||+|||+||+|+.++|+++
T Consensus        57 ~s~~L~~~i~~~I~~~~GpI~fa~yM~~aLy~P~~GYY~~~~~~~G~~~~~~GDFiTAPeiS~~FGe~la~~~~~~~~~~  136 (432)
T 4f3n_A           57 QSEALAASLRAEIASAGGWIPFSRYMERVLYAPGMGYYSGGAQKFGRRADDGSDFVTAPELSPLFAQTLARPVAQALDAS  136 (432)
T ss_dssp             HHHHHHHHHHHHHHHTTSCEEHHHHHHHHHHSTTTSSSCC-------------CCSSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCeeHHHHHHHHhcCCCCCcccCCCCCCCCCCCCCCCccCchhhhHHHHHHHHHHHHHHHHhc
Confidence            36889999999998766999999999999999999999986 6899    999999999999999999999999999999


Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCe
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV  236 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i  236 (320)
                      |   +++|||+|||+|+||.|||++++++...  ..+|+|||+||.|+++|+++|+...+.              .+.+|
T Consensus       137 g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~--~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~--------------~~~~v  197 (432)
T 4f3n_A          137 G---TRRVMEFGAGTGKLAAGLLTALAALGVE--LDEYAIVDLSGELRARQRETLGAQAPG--------------LAARV  197 (432)
T ss_dssp             T---CCEEEEESCTTSHHHHHHHHHHHHTTCC--CSEEEEECTTSSSHHHHHHHHHHHSTT--------------TGGGE
T ss_pred             C---CCeEEEeCCCccHHHHHHHHHHHhcCCC--CceEEEEEcCHHHHHHHHHHHhccccc--------------cCCCc
Confidence            8   4799999999999999999999865322  348999999999999999999753221              23479


Q ss_pred             EeecccccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEEEeecCCCc
Q 020840          237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSA  297 (320)
Q Consensus       237 ~W~~sleelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~v~~p~~~~  297 (320)
                      .|+++   +|++.+|||||||||||||||+|++++++|+|++|.++++|+|.|...|.+++
T Consensus       198 ~W~~~---lP~~~~g~iiANE~fDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~p~~~~  255 (432)
T 4f3n_A          198 RWLDA---LPERFEGVVVGNEVLDAMPVRLVAKQARGWCERGVSIDDAGAFVFADRPFARA  255 (432)
T ss_dssp             EEESS---CCSCEEEEEEEESCGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEEECCSST
T ss_pred             eeccc---CCccCceEEEeehhhccCceeEEEEeCCcEEEEEEEEcCCCcEEeccCCCCcH
Confidence            99864   67666899999999999999999999999999999998888898887776444

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.76  E-value=0.00016  Score=66.22  Aligned_cols=117  Identities=19%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             CCCCCeecCCChhHHHHHHHHHH----------HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEE
Q 020840          126 GAEGDFITSPEVSQMFGEMVGVW----------AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIH  195 (320)
Q Consensus       126 G~~GDFiTSpEIsp~FGe~IA~~----------i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~  195 (320)
                      ++.+||.=--++..+|-.+|-+-          +..+.+..-.| .-+|+|+|||+|.++..+++.+..     ...+++
T Consensus        27 ~~~~~f~F~~~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~~~~-~~~vLDlGcGtG~~~~~la~~~~~-----~~~~v~  100 (261)
T 4gek_A           27 ARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQP-GTQVYDLGCSLGAATLSVRRNIHH-----DNCKII  100 (261)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCT-TCEEEEETCTTTHHHHHHHHTCCS-----SSCEEE
T ss_pred             ccCCCceeCcchhhhhhhhHhhcCCCHHHHHHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHHhcCC-----CCCEEE
Confidence            44566643445566666665441          12222222333 358999999999998887764321     235799


Q ss_pred             EEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEee-cccccCCCCCCEEEEEecccccccc
Q 020840          196 LVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       196 iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~-~sleelp~~~~~~iiANE~fDALPv  264 (320)
                      -||+|+.+.+.-++++....                ...+|.+. .++.++|.+..-+|+++..|--+|.
T Consensus       101 gvD~s~~ml~~A~~~~~~~~----------------~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~~~~~  154 (261)
T 4gek_A          101 AIDNSPAMIERCRRHIDAYK----------------APTPVDVIEGDIRDIAIENASMVVLNFTLQFLEP  154 (261)
T ss_dssp             EEESCHHHHHHHHHHHHTSC----------------CSSCEEEEESCTTTCCCCSEEEEEEESCGGGSCH
T ss_pred             EEECCHHHHHHHHHHHHhhc----------------cCceEEEeecccccccccccccceeeeeeeecCc
Confidence            99999999888777775421                11245554 2345555443468889888877764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.89  E-value=0.0092  Score=53.56  Aligned_cols=91  Identities=13%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhh
Q 020840          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERT  227 (320)
Q Consensus       148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~  227 (320)
                      .+..+.+.++.+...+|+|+|||.|.++..+++..   +     .+++.||+|+.+.+.-++++.....           
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~-----~~v~gvd~s~~~~~~a~~~~~~~~~-----------  112 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY---D-----VNVVGLTLSKNQANHVQQLVANSEN-----------  112 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHTCCC-----------
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc---C-----CEEEEEECCHHHHHHHHHHHHhcCC-----------
Confidence            33334444555555699999999999999887543   1     2799999999998877776643110           


Q ss_pred             hcccCCCCeEe-ecccccCCCCCCEEEEEeccccccc
Q 020840          228 ISSLAGTPVSW-HAALEQVPSGFPTIIVAHEFYDALP  263 (320)
Q Consensus       228 ~~~~~~~~i~W-~~sleelp~~~~~~iiANE~fDALP  263 (320)
                           ...+.+ ..++.+++.. .-+|+++++|..+|
T Consensus       113 -----~~~~~~~~~d~~~~~~~-fD~v~~~~~l~~~~  143 (287)
T 1kpg_A          113 -----LRSKRVLLAGWEQFDEP-VDRIVSIGAFEHFG  143 (287)
T ss_dssp             -----CSCEEEEESCGGGCCCC-CSEEEEESCGGGTC
T ss_pred             -----CCCeEEEECChhhCCCC-eeEEEEeCchhhcC
Confidence                 012332 1233445532 45788888888885

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.88  E-value=0.0045  Score=57.38  Aligned_cols=66  Identities=24%  Similarity=0.382  Sum_probs=47.0

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      .+|  -.|++.+.+-.        .++   +..+.... +|+|+|||+|.|+..+++..         .+++.||+++.+
T Consensus        24 ~~G--QnfL~d~~i~~--------~Iv---~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---------~~V~avEid~~~   80 (271)
T 3fut_A           24 RFG--QNFLVSEAHLR--------RIV---EAARPFTG-PVFEVGPGLGALTRALLEAG---------AEVTAIEKDLRL   80 (271)
T ss_dssp             TSS--CCEECCHHHHH--------HHH---HHHCCCCS-CEEEECCTTSHHHHHHHHTT---------CCEEEEESCGGG
T ss_pred             cCC--ccccCCHHHHH--------HHH---HhcCCCCC-eEEEEeCchHHHHHHHHHcC---------CEEEEEECCHHH
Confidence            355  47888766532        222   22344445 89999999999999887642         258999999999


Q ss_pred             HHHHHHhcc
Q 020840          204 QKLQHHNLK  212 (320)
Q Consensus       204 r~~Q~e~L~  212 (320)
                      .+.-++++.
T Consensus        81 ~~~l~~~~~   89 (271)
T 3fut_A           81 RPVLEETLS   89 (271)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            988777664

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.85  E-value=0.011  Score=53.78  Aligned_cols=97  Identities=11%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN  222 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~  222 (320)
                      +.-.+.+..+.+.++.....+|+|+|||+|.++..+++..   +     .+++.||+|+.+.+.-++++....       
T Consensus        55 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~-----~~v~gvD~s~~~~~~a~~~~~~~~-------  119 (302)
T 3hem_A           55 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY---D-----VNVIGLTLSENQYAHDKAMFDEVD-------  119 (302)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEECCHHHHHHHHHHHHHSC-------
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhC---C-----CEEEEEECCHHHHHHHHHHHHhcC-------
Confidence            3333444445555555555699999999999998887653   1     369999999999887777664310       


Q ss_pred             cchhhhcccCCCCeEee-cccccCCCCCCEEEEEecccccccc
Q 020840          223 VEERTISSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       223 ~~~~~~~~~~~~~i~W~-~sleelp~~~~~~iiANE~fDALPv  264 (320)
                               ....+.+. .++.+++ +..-+|+++++|..+|-
T Consensus       120 ---------~~~~v~~~~~d~~~~~-~~fD~v~~~~~~~~~~d  152 (302)
T 3hem_A          120 ---------SPRRKEVRIQGWEEFD-EPVDRIVSLGAFEHFAD  152 (302)
T ss_dssp             ---------CSSCEEEEECCGGGCC-CCCSEEEEESCGGGTTC
T ss_pred             ---------CCCceEEEECCHHHcC-CCccEEEEcchHHhcCc
Confidence                     01123332 2233442 22458889999988853

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.83  E-value=0.013  Score=52.04  Aligned_cols=90  Identities=12%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             HHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhc
Q 020840          150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTIS  229 (320)
Q Consensus       150 ~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~  229 (320)
                      ..+.+.++.....+|+|+|||.|.++..+.+..        ..+++.||+|+.+.+.-++++....              
T Consensus        51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~--------------  108 (273)
T 3bus_A           51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--------DVRVTGISISRPQVNQANARATAAG--------------  108 (273)
T ss_dssp             HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--------CCEEEEEESCHHHHHHHHHHHHHTT--------------
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--------CCEEEEEeCCHHHHHHHHHHHHhcC--------------
Confidence            334445555455699999999999998877642        2479999999998877666554210              


Q ss_pred             ccCCCCeEee-cccccCC--CCCCEEEEEeccccccc
Q 020840          230 SLAGTPVSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       230 ~~~~~~i~W~-~sleelp--~~~~~~iiANE~fDALP  263 (320)
                        ...++.+. .++.+++  .+..-+|+++++|..+|
T Consensus       109 --~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  143 (273)
T 3bus_A          109 --LANRVTFSYADAMDLPFEDASFDAVWALESLHHMP  143 (273)
T ss_dssp             --CTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSS
T ss_pred             --CCcceEEEECccccCCCCCCCccEEEEechhhhCC
Confidence              00123332 1223333  22246888998888876

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.77  E-value=0.0026  Score=57.95  Aligned_cols=73  Identities=14%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCC-CCcceEEEecCCchhHHHHHHHHHh-cCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.+-+.+...+-.+....+. ....+|+|+|||+|.++..+|..+. ..|..  .+.|+.||+|+.+.+.-++++.
T Consensus        29 ~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~--~v~~~~vD~S~~ml~~a~~~~~  103 (292)
T 2aot_A           29 HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV--CINNEVVEPSAEQIAKYKELVA  103 (292)
T ss_dssp             HHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTC--EEEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCc--eeeEEEEeCCHHHHHHHHHHHH
Confidence            444444444444434333442 3457999999999999999988874 34442  2357999999999887777654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.70  E-value=0.02  Score=51.60  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+...+|+|+|||.|.++..+++..        ..+++.||+|+.+.+.-++++.
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~gvD~s~~~~~~a~~~~~  126 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--------GVSIDCLNIAPVQNKRNEEYNN  126 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--------CCEEEEEeCCHHHHHHHHHHHH
Confidence            43445699999999999999887754        1279999999998877666553

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.68  E-value=0.016  Score=52.10  Aligned_cols=64  Identities=13%  Similarity=0.199  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+--..+...+..+...+..+ +.+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        48 ~~~~~~~~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~~  111 (285)
T 4htf_A           48 QLRQAILWQDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER---------GHQVILCDLSAQMIDRAKQAAE  111 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence            344444445555555555543 469999999999998877653         2379999999999887776664

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.67  E-value=0.0043  Score=59.08  Aligned_cols=68  Identities=13%  Similarity=0.191  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      --.|-++|+..+...+.....|++.+|++||||.|.++..+++.   +|.    .+++.||++|.+.+.-++.+.
T Consensus        67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~---~p~----~~v~~VEidp~vi~~Ar~~~~  134 (317)
T 3gjy_A           67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADV---YPQ----SRNTVVELDAELARLSREWFD  134 (317)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHH---STT----CEEEEEESCHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHH---CCC----cEEEEEECCHHHHHHHHHhcc
Confidence            34677888887765433334455679999999999999888765   233    378999999999998888775

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.63  E-value=0.0082  Score=56.32  Aligned_cols=77  Identities=10%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      ..|.|+|+.++..+..+++.. +    .  ......+|+|+|||+|.++..+++.+.....  ...+++-+|+++...+.
T Consensus       104 ~~g~~~TP~~i~~~~~~ll~~-l----~--~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~--~~~~v~GiDi~~~~~~~  174 (344)
T 2f8l_A          104 QVNHQMTPDSIGFIVAYLLEK-V----I--QKKKNVSILDPACGTANLLTTVINQLELKGD--VDVHASGVDVDDLLISL  174 (344)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHH-H----H--TTCSEEEEEETTCTTSHHHHHHHHHHHTTSS--CEEEEEEEESCHHHHHH
T ss_pred             ccCcCCChHHHHHHHHHHHHH-h----c--CCCCCCEEEeCCCCccHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHH
Confidence            358899998777665555432 1    1  2224479999999999999999888753200  12579999999999877


Q ss_pred             HHHhcc
Q 020840          207 QHHNLK  212 (320)
Q Consensus       207 Q~e~L~  212 (320)
                      -+..+.
T Consensus       175 a~~n~~  180 (344)
T 2f8l_A          175 ALVGAD  180 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.62  E-value=0.02  Score=52.39  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=58.6

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhh
Q 020840          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTI  228 (320)
Q Consensus       149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~  228 (320)
                      +..+.+.++.....+|+|+|||.|.++..+++..        ..+++.||+|+.+.+.-++++.....            
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~------------  138 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--------DVNVIGLTLSKNQHARCEQVLASIDT------------  138 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHHTSCC------------
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--------CCEEEEEECCHHHHHHHHHHHHhcCC------------
Confidence            3334444555455699999999999998887654        12799999999998877776643110            


Q ss_pred             cccCCCCeEee-cccccCCCCCCEEEEEecccccccc
Q 020840          229 SSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       229 ~~~~~~~i~W~-~sleelp~~~~~~iiANE~fDALPv  264 (320)
                          ...+.+. .++.+++.. .-+|+++++|..+|.
T Consensus       139 ----~~~v~~~~~d~~~~~~~-fD~v~~~~~l~~~~~  170 (318)
T 2fk8_A          139 ----NRSRQVLLQGWEDFAEP-VDRIVSIEAFEHFGH  170 (318)
T ss_dssp             ----SSCEEEEESCGGGCCCC-CSEEEEESCGGGTCG
T ss_pred             ----CCceEEEECChHHCCCC-cCEEEEeChHHhcCH
Confidence                0123322 223445433 447888888888863

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.51  E-value=0.017  Score=48.69  Aligned_cols=48  Identities=19%  Similarity=0.429  Sum_probs=37.1

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.+.. +|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++.
T Consensus        40 ~~~~~~-~vLdiG~G~G~~~~~l~~~----~----~~~v~~~D~s~~~~~~a~~~~~   87 (219)
T 3dlc_A           40 FGITAG-TCIDIGSGPGALSIALAKQ----S----DFSIRALDFSKHMNEIALKNIA   87 (219)
T ss_dssp             HCCCEE-EEEEETCTTSHHHHHHHHH----S----EEEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCC-EEEEECCCCCHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            444433 9999999999998887764    2    2479999999999887777664

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.49  E-value=0.0087  Score=56.17  Aligned_cols=63  Identities=17%  Similarity=0.266  Sum_probs=45.2

Q ss_pred             CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       130 DFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      .|.+.+.+-        ..+++   .++....-+|+|+|||+|.|+..+++..         .+++-||+++.+.+.-++
T Consensus        31 nfL~d~~i~--------~~Iv~---~l~~~~~~~VLEIG~G~G~lT~~La~~~---------~~V~aVEid~~li~~a~~   90 (295)
T 3gru_A           31 CFLIDKNFV--------NKAVE---SANLTKDDVVLEIGLGKGILTEELAKNA---------KKVYVIEIDKSLEPYANK   90 (295)
T ss_dssp             CEECCHHHH--------HHHHH---HTTCCTTCEEEEECCTTSHHHHHHHHHS---------SEEEEEESCGGGHHHHHH
T ss_pred             cccCCHHHH--------HHHHH---hcCCCCcCEEEEECCCchHHHHHHHhcC---------CEEEEEECCHHHHHHHHH
Confidence            588876552        22222   2333334589999999999999888741         268999999999988777


Q ss_pred             hcc
Q 020840          210 NLK  212 (320)
Q Consensus       210 ~L~  212 (320)
                      ++.
T Consensus        91 ~~~   93 (295)
T 3gru_A           91 LKE   93 (295)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.40  E-value=0.0052  Score=51.85  Aligned_cols=61  Identities=16%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+..++.+.....  ....+|+|+|||+|.++..+++..   |    ..+++.||+|+.+.+.-++++.
T Consensus        15 ~~~~~~~~~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~---~----~~~v~~vD~~~~~~~~a~~~~~   75 (215)
T 4dzr_A           15 EVLVEEAIRFLKRM--PSGTRVIDVGTGSGCIAVSIALAC---P----GVSVTAVDLSMDALAVARRNAE   75 (215)
T ss_dssp             HHHHHHHHHHHTTC--CTTEEEEEEESSBCHHHHHHHHHC---T----TEEEEEEECC------------
T ss_pred             HHHHHHHHHHhhhc--CCCCEEEEecCCHhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHHH
Confidence            44455555444321  344699999999999998887753   2    3479999999998776655543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.36  E-value=0.013  Score=50.10  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        47 ~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~   88 (220)
T 3hnr_A           47 GNVLEFGVGTGNLTNKLLLA---------GRTVYGIEPSREMRMIAKEKLP   88 (220)
T ss_dssp             SEEEEECCTTSHHHHHHHHT---------TCEEEEECSCHHHHHHHHHHSC
T ss_pred             CeEEEeCCCCCHHHHHHHhC---------CCeEEEEeCCHHHHHHHHHhCC
Confidence            58999999999998887653         2379999999999887777654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=96.34  E-value=0.011  Score=51.48  Aligned_cols=85  Identities=11%  Similarity=0.063  Sum_probs=53.4

Q ss_pred             HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccC
Q 020840          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA  232 (320)
Q Consensus       153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~  232 (320)
                      +...+.+. .+|+|+|||+|.++..+.+         ...+++.||+|+.+.+.-++++.....                
T Consensus        60 ~~~~~~~~-~~vLDiGcG~G~~~~~l~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------  113 (235)
T 3lcc_A           60 VDTSSLPL-GRALVPGCGGGHDVVAMAS---------PERFVVGLDISESALAKANETYGSSPK----------------  113 (235)
T ss_dssp             HHTTCSCC-EEEEEETCTTCHHHHHHCB---------TTEEEEEECSCHHHHHHHHHHHTTSGG----------------
T ss_pred             HHhcCCCC-CCEEEeCCCCCHHHHHHHh---------CCCeEEEEECCHHHHHHHHHHhhccCC----------------
Confidence            33344444 4999999999998886532         124799999999998877776643100                


Q ss_pred             CCCeEee-cccccCC-CCCCEEEEEeccccccc
Q 020840          233 GTPVSWH-AALEQVP-SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       233 ~~~i~W~-~sleelp-~~~~~~iiANE~fDALP  263 (320)
                      ..++.+. .++.+++ .+..-+|+++.+|..+|
T Consensus       114 ~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  146 (235)
T 3lcc_A          114 AEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIE  146 (235)
T ss_dssp             GGGEEEECCCTTTCCCSSCEEEEEEESSTTTSC
T ss_pred             CcceEEEECchhcCCCCCCeeEEEEChhhhcCC
Confidence            0123332 1122222 22245889999999887

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.26  E-value=0.028  Score=51.83  Aligned_cols=51  Identities=10%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             HHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..++.+...+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++..
T Consensus        39 ~~l~l~~g~~VLDlGcGtG~~a~~La~~---------g~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           39 FLENIVPGSTVAVIGASTRFLIEKALER---------GASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             HTTTCCTTCEEEEECTTCHHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHTSS
T ss_pred             HhcCCCCcCEEEEEeCcchHHHHHHHhc---------CCEEEEEECCHHHHHHHHHHHHh
Confidence            3345545569999999999998877642         12699999999999877777653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.24  E-value=0.013  Score=51.20  Aligned_cols=57  Identities=14%  Similarity=0.162  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      |+..+.+.+......+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++.
T Consensus        81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--------~~~v~~vD~s~~~~~~a~~~~~  137 (254)
T 1xtp_A           81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--------YATTDLLEPVKHMLEEAKRELA  137 (254)
T ss_dssp             HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--------CSEEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--------cCEEEEEeCCHHHHHHHHHHhc
Confidence            44444444544455799999999999998887653        1269999999999887777664

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.23  E-value=0.025  Score=48.82  Aligned_cols=45  Identities=13%  Similarity=0.045  Sum_probs=34.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~----~----~~~v~~vD~s~~~~~~a~~~~~   87 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH----G----ASYVLGLDLSEKMLARARAAGP   87 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHHHHTSC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC----C----CCeEEEEcCCHHHHHHHHHhcc
Confidence            3469999999999998776553    1    1179999999999887776653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=96.20  E-value=0.011  Score=53.62  Aligned_cols=48  Identities=19%  Similarity=0.211  Sum_probs=36.7

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+.+|+|+|||+|.++..+++.   +|.   ..+++.||+||.+.+.-++++.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~---~~~v~gvD~s~~~~~~a~~~~~   68 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPL---LPE---GSKYTGIDSGETLLAEARELFR   68 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTT---SCT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh---CCC---CCEEEEEECCHHHHHHHHHHHH
Confidence            34569999999999998887543   221   3579999999999887776654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.16  E-value=0.027  Score=48.65  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEee
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~  239 (320)
                      ...+|+|+|||+|.++..+++..   |    ..+++.||+|+.+.+.-++++....                   .+.+.
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~---~----~~~v~~vD~s~~~~~~a~~~~~~~~-------------------~~~~~   97 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKY---P----EATFTLVDMSEKMLEIAKNRFRGNL-------------------KVKYI   97 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHC---T----TCEEEEEESCHHHHHHHHHHTCSCT-------------------TEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHhhccCC-------------------CEEEE
Confidence            45799999999999998887653   2    2479999999999887777664311                   22222


Q ss_pred             -cccccCCC-CCCEEEEEecccccccce
Q 020840          240 -AALEQVPS-GFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       240 -~sleelp~-~~~~~iiANE~fDALPv~  265 (320)
                       .++.+++. +..-+|+++.++.-++-.
T Consensus        98 ~~d~~~~~~~~~fD~v~~~~~l~~~~~~  125 (234)
T 3dtn_A           98 EADYSKYDFEEKYDMVVSALSIHHLEDE  125 (234)
T ss_dssp             ESCTTTCCCCSCEEEEEEESCGGGSCHH
T ss_pred             eCchhccCCCCCceEEEEeCccccCCHH
Confidence             12233322 224578888888877643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.16  E-value=0.03  Score=47.78  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=51.8

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCe
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV  236 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i  236 (320)
                      ......+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++...                   ..+
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~~   99 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPH---------CKRLTVIDVMPRAIGRACQRTKRW-------------------SHI   99 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGG---------EEEEEEEESCHHHHHHHHHHTTTC-------------------SSE
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHhcccC-------------------CCe
Confidence            3334569999999999988776542         137999999999988777766431                   023


Q ss_pred             Eee-cccccCC-CCCCEEEEEeccccccc
Q 020840          237 SWH-AALEQVP-SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       237 ~W~-~sleelp-~~~~~~iiANE~fDALP  263 (320)
                      .+. .++.+++ .+..-+|+++.+|.-+|
T Consensus       100 ~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A          100 SWAATDILQFSTAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             EEEECCTTTCCCSCCEEEEEEESCGGGSS
T ss_pred             EEEEcchhhCCCCCCccEEEEccHHHhCC
Confidence            332 1223332 22245888888887777

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.13  E-value=0.06  Score=47.66  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh------hHHHHHHhcc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT------LQKLQHHNLK  212 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~------Lr~~Q~e~L~  212 (320)
                      .-+...-......+...++.....+|+|+|||+|.++..+++...  |    ..+++.||+|+.      +.+.-++++.
T Consensus        22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g--~----~~~v~gvD~s~~~~~~~~~~~~a~~~~~   95 (275)
T 3bkx_A           22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVG--S----SGHVTGIDIASPDYGAPLTLGQAWNHLL   95 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHC--T----TCEEEEECSSCTTCCSSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhC--C----CCEEEEEECCccccccHHHHHHHHHHHH
Confidence            344455555555566666655556999999999999998876541  1    137999999996      5554444443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.12  E-value=0.017  Score=50.55  Aligned_cols=56  Identities=7%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       147 ~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .++.........+...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---------~~~v~gvD~s~~~l~~a~~~~   83 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---------GYEVVGLDLHEEMLRVARRKA   83 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence            44555555555444569999999999998877652         137999999999987666654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.11  E-value=0.033  Score=48.13  Aligned_cols=90  Identities=12%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             hcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCccc
Q 020840          111 LTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE  190 (320)
Q Consensus       111 LY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~  190 (320)
                      .+-|+..||.....+| .|..++.|.+..        ++.+.... ......+|+|+|||+|.++..+.+.....+  ..
T Consensus        41 ~f~p~~~y~d~~~~~~-~~~~~~~p~~~~--------~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~--~~  108 (227)
T 2pbf_A           41 KYIKEIPYIDTPVYIS-HGVTISAPHMHA--------LSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLE--NK  108 (227)
T ss_dssp             GTCSSSTTSSSCEEEE-TTEEECCHHHHH--------HHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTT--CT
T ss_pred             HcCCcccCCCCccccC-CCCccCChHHHH--------HHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccC--CC
Confidence            4556655665443344 244566554321        22222211 122335899999999999998877542100  01


Q ss_pred             ceeEEEEecChhhHHHHHHhcc
Q 020840          191 SLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       191 ~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+++.||+|+.+.+.-++++.
T Consensus       109 ~~~v~~vD~~~~~~~~a~~~~~  130 (227)
T 2pbf_A          109 NSYVIGLERVKDLVNFSLENIK  130 (227)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHH
Confidence            2479999999999887777664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.09  E-value=0.034  Score=48.64  Aligned_cols=49  Identities=16%  Similarity=0.078  Sum_probs=37.5

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .++.....+|+|+|||+|.++..+.+.+   |.    .+++.||+|+.+.+.-+++
T Consensus        28 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~----~~v~~~D~s~~~~~~a~~~   76 (259)
T 2p35_A           28 QVPLERVLNGYDLGCGPGNSTELLTDRY---GV----NVITGIDSDDDMLEKAADR   76 (259)
T ss_dssp             TCCCSCCSSEEEETCTTTHHHHHHHHHH---CT----TSEEEEESCHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHh
Confidence            3444445689999999999999887764   22    3699999999998776655

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=96.08  E-value=0.047  Score=46.37  Aligned_cols=52  Identities=17%  Similarity=0.135  Sum_probs=36.8

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccce-eEEEEecChhhHHHHHHhc
Q 020840          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESL-HIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       147 ~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l-~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ............ ...+|+|+|||+|.++..+            .. +++.||+|+.+.+.-++++
T Consensus        24 ~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l------------~~~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           24 AEEERALKGLLP-PGESLLEVGAGTGYWLRRL------------PYPQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHHHHHHTTCC-CCSEEEEETCTTCHHHHHC------------CCSEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC-CCCeEEEECCCCCHhHHhC------------CCCeEEEEeCCHHHHHHHHHhC
Confidence            333444444433 4469999999999987755            12 7999999999987766654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.07  E-value=0.031  Score=47.77  Aligned_cols=82  Identities=12%  Similarity=0.255  Sum_probs=51.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEee-
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-  239 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~-  239 (320)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.......            .....+.+. 
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~   89 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK---------GYSVTGIDINSEAIRLAETAARSPGLNQ------------KTGGKAEFKV   89 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHTTCCSCCS------------SSSCEEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhC---------CCeEEEEECCHHHHHHHHHHHHhcCCcc------------ccCcceEEEE
Confidence            458999999999998877653         2379999999999887777665321000            001123332 


Q ss_pred             cccccCC--CCCCEEEEEeccccccc
Q 020840          240 AALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       240 ~sleelp--~~~~~~iiANE~fDALP  263 (320)
                      .++.+++  .+..-+|+++.++..+|
T Consensus        90 ~d~~~~~~~~~~~D~v~~~~~l~~~~  115 (235)
T 3sm3_A           90 ENASSLSFHDSSFDFAVMQAFLTSVP  115 (235)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             ecccccCCCCCceeEEEEcchhhcCC
Confidence            2223332  23246788888888886

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.06  E-value=0.011  Score=53.01  Aligned_cols=43  Identities=16%  Similarity=0.270  Sum_probs=34.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||+|.++..+++     +    ..+++.||+|+.+.+.-++++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~-----~----~~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ-----S----GAEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-----T----TCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEecCCCCHHHHHHHh-----C----CCeEEEEECCHHHHHHHHhhC
Confidence            345899999999999988876     2    137999999999988766654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.05  E-value=0.048  Score=47.80  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=35.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++..   +     .+++.||+|+.+.+.-++++.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~---~-----~~v~~vD~s~~~~~~a~~~~~   88 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHG---A-----KKVLGIDLSERMLTEAKRKTT   88 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT---C-----SEEEEEESCHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcC---C-----CEEEEEECCHHHHHHHHHhhc
Confidence            45699999999999888876531   1     169999999999887777654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=96.04  E-value=0.052  Score=50.75  Aligned_cols=73  Identities=19%  Similarity=0.316  Sum_probs=51.0

Q ss_pred             ecCCC---hhHHHHHHHHHHHH-----HHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          132 ITSPE---VSQMFGEMVGVWAM-----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       132 iTSpE---Isp~FGe~IA~~i~-----~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      ...|+   ....|...++.+..     .+.+..+.+...+|+|+|||+|.++..+++.   +|    .++++.+|+ |.+
T Consensus       154 ~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~---~p----~~~~~~~D~-~~~  225 (359)
T 1x19_A          154 VPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKH---FP----ELDSTILNL-PGA  225 (359)
T ss_dssp             SCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHH---CT----TCEEEEEEC-GGG
T ss_pred             ccCchhhHHHHHHHHHHHHhccchhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHH---CC----CCeEEEEec-HHH
Confidence            45577   77777776654322     3334455555579999999999999988775   33    347999999 888


Q ss_pred             HHHHHHhcc
Q 020840          204 QKLQHHNLK  212 (320)
Q Consensus       204 r~~Q~e~L~  212 (320)
                      .+.-++++.
T Consensus       226 ~~~a~~~~~  234 (359)
T 1x19_A          226 IDLVNENAA  234 (359)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.03  E-value=0.022  Score=48.08  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=34.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|.++..++..    +    ..+++.||+|+.+.+.-++++.
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~----~----~~~v~~vD~~~~~~~~a~~~~~   88 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSR----G----AASVLFVESDQRSAAVIARNIE   88 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT----T----CSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHC----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            358999999999998876541    1    2369999999999887766654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.03  E-value=0.011  Score=53.22  Aligned_cols=47  Identities=21%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-+|+|+|||+|.++..+++..         .+++.||+|+.+.+.-++++.
T Consensus        27 ~~~~~~~VLDiG~G~G~lt~~l~~~~---------~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           27 RLNEHDNIFEIGSGKGHFTLELVQRC---------NFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHS---------SEEEEECSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCchHHHHHHHHcC---------CeEEEEECCHHHHHHHHHhhc
Confidence            33334589999999999999887642         369999999999888777664

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.02  E-value=0.0071  Score=55.39  Aligned_cols=47  Identities=32%  Similarity=0.464  Sum_probs=36.8

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-+|+|+|||+|.|+..+++..         .+++.||+++.+.+.-++++.
T Consensus        26 ~~~~~~~VLEIG~G~G~lt~~La~~~---------~~V~avEid~~~~~~~~~~~~   72 (255)
T 3tqs_A           26 HPQKTDTLVEIGPGRGALTDYLLTEC---------DNLALVEIDRDLVAFLQKKYN   72 (255)
T ss_dssp             CCCTTCEEEEECCTTTTTHHHHTTTS---------SEEEEEECCHHHHHHHHHHHT
T ss_pred             CCCCcCEEEEEcccccHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHHh
Confidence            33334589999999999998876531         369999999999988777764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.00  E-value=0.025  Score=48.75  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||+|.++..+++...         +++.||+|+.+.+.-++++
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~---------~v~~~D~s~~~~~~a~~~~   82 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG---------DTAGLELSEDMLTHARKRL   82 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS---------EEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC---------cEEEEeCCHHHHHHHHHhC
Confidence            346999999999999988776531         6899999999988777665

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.98  E-value=0.03  Score=48.42  Aligned_cols=42  Identities=17%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+..+++.
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~   95 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRT---------GYKAVGVDISEVMIQKGKERG   95 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHTTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHhhc
Confidence            359999999999998877653         237999999999988777653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=95.95  E-value=0.021  Score=46.93  Aligned_cols=49  Identities=18%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+++..       ...+++.||+|+.+.+.-++++.
T Consensus        22 ~~~~~~~vldiG~G~G~~~~~l~~~~-------~~~~v~~vD~~~~~~~~a~~~~~   70 (178)
T 3hm2_A           22 APKPHETLWDIGGGSGSIAIEWLRST-------PQTTAVCFEISEERRERILSNAI   70 (178)
T ss_dssp             CCCTTEEEEEESTTTTHHHHHHHTTS-------SSEEEEEECSCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHC-------CCCeEEEEeCCHHHHHHHHHHHH
Confidence            43344699999999999988776532       23579999999998877666654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.91  E-value=0.014  Score=48.03  Aligned_cols=43  Identities=19%  Similarity=0.187  Sum_probs=33.7

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ....+|+|+|||.|.++..+.+..        . +++.||+|+.+.+.-+++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--------~-~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--------T-KLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--------E-EEEEECSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--------C-eEEEEeCCHHHHHHHHHh
Confidence            344699999999999988776532        1 799999999988766665

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=95.90  E-value=0.014  Score=50.75  Aligned_cols=99  Identities=21%  Similarity=0.252  Sum_probs=59.1

Q ss_pred             HHHHHHH---hhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHH
Q 020840          103 VAEYMEE---VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLL  179 (320)
Q Consensus       103 f~dfM~~---aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL  179 (320)
                      +.+-|..   ..|.|..-|+.....+| .|.+++.|.+....-+.++.         ......+|+|+|||+|.++..+.
T Consensus        34 ~~~a~~~~~r~~f~~~~~y~d~~~~~~-~~~~~~~p~~~~~~~~~l~~---------~~~~~~~VLdiG~G~G~~~~~la  103 (227)
T 1r18_A           34 VAQAMKETDRKHYSPRNPYMDAPQPIG-GGVTISAPHMHAFALEYLRD---------HLKPGARILDVGSGSGYLTACFY  103 (227)
T ss_dssp             HHHHHHTSCGGGTCSSCTTBSSCEEEE-TTEEECCHHHHHHHHHHTTT---------TCCTTCEEEEESCTTSHHHHHHH
T ss_pred             HHHHHHhCCHHHcCCcccccCCCcccC-CCCccCChHHHHHHHHHHHh---------hCCCCCEEEEECCCccHHHHHHH
Confidence            4444442   35666665655544455 34566666654332222110         12223589999999999999888


Q ss_pred             HHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          180 RGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       180 ~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +...... .....+++.||+|+.+.+.-++++.
T Consensus       104 ~~~~~~~-~~~~~~v~~vD~~~~~~~~a~~~~~  135 (227)
T 1r18_A          104 RYIKAKG-VDADTRIVGIEHQAELVRRSKANLN  135 (227)
T ss_dssp             HHHHHSC-CCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             Hhccccc-CCccCEEEEEEcCHHHHHHHHHHHH
Confidence            7653200 0012379999999999887777664

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.88  E-value=0.016  Score=53.69  Aligned_cols=69  Identities=22%  Similarity=0.332  Sum_probs=46.9

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      .+|  -.|++.+.+-.        .+++.   .+....-+|+|+|||+|.|+..+++.....     ..+++.||+++.+
T Consensus        19 ~~G--Q~fL~d~~i~~--------~iv~~---~~~~~~~~VLEIG~G~G~lt~~La~~~~~~-----~~~V~avDid~~~   80 (279)
T 3uzu_A           19 RFG--QNFLVDHGVID--------AIVAA---IRPERGERMVEIGPGLGALTGPVIARLATP-----GSPLHAVELDRDL   80 (279)
T ss_dssp             CCS--CCEECCHHHHH--------HHHHH---HCCCTTCEEEEECCTTSTTHHHHHHHHCBT-----TBCEEEEECCHHH
T ss_pred             cCC--ccccCCHHHHH--------HHHHh---cCCCCcCEEEEEccccHHHHHHHHHhCCCc-----CCeEEEEECCHHH
Confidence            455  37988876532        22222   233334589999999999999988764210     1348999999999


Q ss_pred             HHHHHHh
Q 020840          204 QKLQHHN  210 (320)
Q Consensus       204 r~~Q~e~  210 (320)
                      .+.-+++
T Consensus        81 l~~a~~~   87 (279)
T 3uzu_A           81 IGRLEQR   87 (279)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8876665

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.88  E-value=0.054  Score=45.79  Aligned_cols=40  Identities=18%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL---------ADRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH---------SSEEEEEESCHHHHHHHGG
T ss_pred             CCeEEEECCCCCHHHHHHHhc---------CCeEEEEeCCHHHHHHHHh
Confidence            359999999999999887764         1379999999998765554

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.87  E-value=0.023  Score=46.57  Aligned_cols=44  Identities=14%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+.+         ...+++.||+|+.+.+.-++++.
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~   78 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK---------RCKFVYAIDYLDGAIEVTKQNLA   78 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT---------TSSEEEEEECSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHH
Confidence            345899999999999887765         12479999999999887777664

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=95.87  E-value=0.017  Score=49.83  Aligned_cols=50  Identities=14%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      +..++.+...+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++.
T Consensus        15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~---------g~~V~gvD~S~~~l~~a~~~~   64 (203)
T 1pjz_A           15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ---------GYHVVGAELSEAAVERYFTER   64 (203)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHH---------CCEEEEEEECHHHHHHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCCCcHhHHHHHHC---------CCeEEEEeCCHHHHHHHHHHc
Confidence            34445545569999999999999876652         126999999999988766654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=95.79  E-value=0.041  Score=47.20  Aligned_cols=44  Identities=25%  Similarity=0.322  Sum_probs=35.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+.+.   .+    ..+++.||+|+.+.+.-++++.
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~---~~----~~~v~gvD~s~~~~~~a~~~~~   74 (217)
T 3jwh_A           31 RRVIDLGCGQGNLLKILLKD---SF----FEQITGVDVSYRSLEIAQERLD   74 (217)
T ss_dssp             CEEEEETCTTCHHHHHHHHC---TT----CSEEEEEESCHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCCHHHHHHHhh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999998876652   12    2479999999999888777764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=95.78  E-value=0.03  Score=47.55  Aligned_cols=45  Identities=13%  Similarity=0.201  Sum_probs=34.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..-+|+|+|||+|.++..+.+.    +    ..+++-||+|+.+.+.-++++.
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~----~----~~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL----G----AESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT----T----BSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCEEEEEeCCccHHHHHHHHc----C----CCEEEEEECCHHHHHHHHHhcC
Confidence            3458999999999988776542    1    1269999999999887776653

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=95.78  E-value=0.03  Score=48.11  Aligned_cols=42  Identities=33%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+.+.   .+      +++.||+|+.+.+.-++++.
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~---~~------~v~gvD~s~~~~~~a~~~~~   85 (250)
T 2p7i_A           44 GNLLELGSFKGDFTSRLQEH---FN------DITCVEASEEAISHAQGRLK   85 (250)
T ss_dssp             SCEEEESCTTSHHHHHHTTT---CS------CEEEEESCHHHHHHHHHHSC
T ss_pred             CcEEEECCCCCHHHHHHHHh---CC------cEEEEeCCHHHHHHHHHhhh
Confidence            48999999999988776542   11      58999999998877766553

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=95.78  E-value=0.012  Score=59.59  Aligned_cols=73  Identities=16%  Similarity=0.238  Sum_probs=54.8

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      +.|.|||+++|..+..+++..        ...| ...+|+|.+||+|.|...+++.++..+    ..+++-+|+++....
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~--------~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~----~~~i~G~Eid~~~~~  262 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFL--------GREDKQGFTLYDATMGSGSLLLNAKRYSRQPQ----TVVYFGQELNTSTYN  262 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHT--------TCTTCTTCEEEETTCTTSTTGGGHHHHCSCTT----TCEEEEEESCHHHHH
T ss_pred             cCCeecccHHHHHHHHHHHhc--------ccCCCCCCEEeecccchhHHHHHHHHHHHhcc----CceEEEEECcHHHHH
Confidence            479999999998776665432        1111 346899999999999998888775322    457999999999888


Q ss_pred             HHHHhc
Q 020840          206 LQHHNL  211 (320)
Q Consensus       206 ~Q~e~L  211 (320)
                      .-+..+
T Consensus       263 lA~~Nl  268 (542)
T 3lkd_A          263 LARMNM  268 (542)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.76  E-value=0.064  Score=49.06  Aligned_cols=84  Identities=19%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeE
Q 020840          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVS  237 (320)
Q Consensus       158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~  237 (320)
                      .....+|+|+|||.|.++..+.+..        ..+++.||+|+.+.+.-++++....                ....+.
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~----------------~~~~v~  170 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--------GSRVEGVTLSAAQADFGNRRARELR----------------IDDHVR  170 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHHHTT----------------CTTTEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHHHcC----------------CCCceE
Confidence            3345699999999999998887653        1369999999998887766654310                001233


Q ss_pred             ee-cccccCC--CCCCEEEEEecccccccce
Q 020840          238 WH-AALEQVP--SGFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       238 W~-~sleelp--~~~~~~iiANE~fDALPv~  265 (320)
                      +. .++.+++  .+..-+|++++++..++..
T Consensus       171 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~  201 (312)
T 3vc1_A          171 SRVCNMLDTPFDKGAVTASWNNESTMYVDLH  201 (312)
T ss_dssp             EEECCTTSCCCCTTCEEEEEEESCGGGSCHH
T ss_pred             EEECChhcCCCCCCCEeEEEECCchhhCCHH
Confidence            32 2233333  2334688899888887633

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=95.75  E-value=0.036  Score=47.10  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      |.|.|++++....-+.    +    ...+....-+|+|+|||+|.++..+.+.    +    ..+++.||+|+.+.+.-+
T Consensus        26 ~~~~~~~~~~~~l~~~----~----~~~~~~~~~~vlD~g~G~G~~~~~l~~~----~----~~~v~~vD~~~~~~~~a~   89 (207)
T 1wy7_A           26 EQYRTPGNAASELLWL----A----YSLGDIEGKVVADLGAGTGVLSYGALLL----G----AKEVICVEVDKEAVDVLI   89 (207)
T ss_dssp             TCCCCCHHHHHHHHHH----H----HHTTSSTTCEEEEETCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHHH
T ss_pred             eeecCchHHHHHHHHH----H----HHcCCCCcCEEEEeeCCCCHHHHHHHHc----C----CCEEEEEECCHHHHHHHH
Confidence            3477876654432222    1    1223223458999999999988876542    1    126999999999988777


Q ss_pred             Hhcc
Q 020840          209 HNLK  212 (320)
Q Consensus       209 e~L~  212 (320)
                      +++.
T Consensus        90 ~~~~   93 (207)
T 1wy7_A           90 ENLG   93 (207)
T ss_dssp             HHTG
T ss_pred             HHHH
Confidence            7664

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.75  E-value=0.07  Score=46.55  Aligned_cols=43  Identities=14%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~   81 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR---------GYRYIALDADAAMLEVFRQKI   81 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT---------TCEEEEEESCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHh
Confidence            4469999999999998877642         136999999999988777765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.73  E-value=0.055  Score=45.68  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=32.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-+++.
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~   83 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASL---------GHQIEGLEPATRLVELARQTH   83 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHT---------TCCEEEECCCHHHHHHHHHHC
T ss_pred             CeEEEecCCCCHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHhC
Confidence            48999999999988877653         126999999999887766653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=95.72  E-value=0.083  Score=49.90  Aligned_cols=71  Identities=25%  Similarity=0.417  Sum_probs=47.5

Q ss_pred             CCChhHHHHHHHHHHH----HHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          134 SPEVSQMFGEMVGVWA----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       134 SpEIsp~FGe~IA~~i----~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      .|+....|...++.+.    ..+.+..+.+...+|+|+|||+|.++..+++.   +|    .++++.+|+ |...+.-++
T Consensus       172 ~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p----~~~~~~~D~-~~~~~~a~~  243 (369)
T 3gwz_A          172 DPKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDA---FP----GLRGTLLER-PPVAEEARE  243 (369)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHH---CT----TCEEEEEEC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHH---CC----CCeEEEEcC-HHHHHHHHH
Confidence            4566666666555432    22333344445579999999999999888775   33    347899999 887666665


Q ss_pred             hcc
Q 020840          210 NLK  212 (320)
Q Consensus       210 ~L~  212 (320)
                      ++.
T Consensus       244 ~~~  246 (369)
T 3gwz_A          244 LLT  246 (369)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            553

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.72  E-value=0.051  Score=46.26  Aligned_cols=42  Identities=24%  Similarity=0.406  Sum_probs=33.5

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA---------GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCHHHHHHHHc---------CCeEEEECCCHHHHHHHHHhc
Confidence            458999999999998877653         237999999999887666654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.70  E-value=0.0098  Score=52.84  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=33.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|||||.|.++..|.+   ..|     -+++.||+||.+.+.-+++..
T Consensus        61 G~rVLdiG~G~G~~~~~~~~---~~~-----~~v~~id~~~~~~~~a~~~~~  104 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQE---API-----DEHWIIECNDGVFQRLRDWAP  104 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTT---SCE-----EEEEEEECCHHHHHHHHHHGG
T ss_pred             CCeEEEECCCccHHHHHHHH---hCC-----cEEEEEeCCHHHHHHHHHHHh
Confidence            35999999999998876643   223     268999999999887766554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=95.70  E-value=0.022  Score=47.56  Aligned_cols=44  Identities=16%  Similarity=0.070  Sum_probs=35.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..-+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~~vD~s~~~l~~a~~~~~   65 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL---------SKKVYAFDVQEQALGKTSQRLS   65 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT---------SSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh---------CCEEEEEECCHHHHHHHHHHHH
Confidence            3458999999999999876543         2479999999999887776664

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=95.69  E-value=0.039  Score=47.27  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+.+.   .|    ..+++-||+|+.+.+.-++++.
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~---~~----~~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           31 KKVIDLGCGEGNLLSLLLKD---KS----FEQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             CEEEEETCTTCHHHHHHHTS---TT----CCEEEEEESCHHHHHHHHHHHT
T ss_pred             CEEEEecCCCCHHHHHHHhc---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            59999999999988776542   12    2479999999999988887764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=95.67  E-value=0.019  Score=49.49  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       146 A~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..++.......+ +...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        24 ~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~---------~~~~~~~D~s~~~~~~a~~~~~   80 (246)
T 1y8c_A           24 SDFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK---------FKNTWAVDLSQEMLSEAENKFR   80 (246)
T ss_dssp             HHHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG---------SSEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCeEEEeCCCCCHHHHHHHHC---------CCcEEEEECCHHHHHHHHHHHh
Confidence            344444444332 23469999999999998876542         1369999999999887766653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=95.67  E-value=0.032  Score=49.67  Aligned_cols=61  Identities=10%  Similarity=0.022  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       144 ~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+..|+.........+...+|+|+|||+|.++..+.+.    +    ..+++.||+|+.+.+.-++++.
T Consensus        48 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~----~~~v~gvD~s~~~~~~a~~~~~  108 (298)
T 1ri5_A           48 NANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA----G----IGEYYGVDIAEVSINDARVRAR  108 (298)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHH----T----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHH
Confidence            34445544433322233469999999999988875542    1    1379999999999887777664

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=95.67  E-value=0.023  Score=48.20  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..++...   |    ..+++.||+|+.+.+.-++++.
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~---~----~~~v~~vD~s~~~~~~a~~~~~  110 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVR---P----EAHFTLLDSLGKRVRFLRQVQH  110 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHC---T----TSEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            489999999999998877643   2    2479999999998876666554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.62  E-value=0.072  Score=46.54  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=52.4

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEe
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W  238 (320)
                      +...+|+|+|||+|.++..+.+..   +     .+++.||+|+.+.+.-++++....                ...++.+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~---~-----~~v~~vD~s~~~~~~a~~~~~~~~----------------~~~~~~~  100 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYV---K-----GQITGIDLFPDFIEIFNENAVKAN----------------CADRVKG  100 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHC---C-----SEEEEEESCHHHHHHHHHHHHHTT----------------CTTTEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhC---C-----CeEEEEECCHHHHHHHHHHHHHcC----------------CCCceEE
Confidence            344599999999999998887653   2     179999999999887766654311                0012332


Q ss_pred             e-cccccCC--CCCCEEEEEecccccccc
Q 020840          239 H-AALEQVP--SGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       239 ~-~sleelp--~~~~~~iiANE~fDALPv  264 (320)
                      . .++.+++  .+..-+|+++.++..++.
T Consensus       101 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  129 (257)
T 3f4k_A          101 ITGSMDNLPFQNEELDLIWSEGAIYNIGF  129 (257)
T ss_dssp             EECCTTSCSSCTTCEEEEEEESCSCCCCH
T ss_pred             EECChhhCCCCCCCEEEEEecChHhhcCH
Confidence            2 2233333  222458888888777643

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.62  E-value=0.031  Score=48.84  Aligned_cols=48  Identities=13%  Similarity=0.254  Sum_probs=37.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+...+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++.
T Consensus        33 ~~~~~~~VLDiGcG~G~~~~~la~~~--------~~~v~gvD~s~~~l~~a~~~~~   80 (256)
T 1nkv_A           33 RMKPGTRILDLGSGSGEMLCTWARDH--------GITGTGIDMSSLFTAQAKRRAE   80 (256)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHT--------CCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHH
Confidence            44445699999999999998887653        1368999999999887766654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.61  E-value=0.035  Score=47.30  Aligned_cols=66  Identities=26%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|.+++.|.+....-           +.++.....+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-
T Consensus        56 ~~~~~~~~~~~~~~~-----------~~l~~~~~~~vLdiG~G~G~~~~~la~~---------~~~v~~vD~~~~~~~~a  115 (210)
T 3lbf_A           56 QGQTISQPYMVARMT-----------ELLELTPQSRVLEIGTGSGYQTAILAHL---------VQHVCSVERIKGLQWQA  115 (210)
T ss_dssp             TSCEECCHHHHHHHH-----------HHTTCCTTCEEEEECCTTSHHHHHHHHH---------SSEEEEEESCHHHHHHH
T ss_pred             CCCEeCCHHHHHHHH-----------HhcCCCCCCEEEEEcCCCCHHHHHHHHh---------CCEEEEEecCHHHHHHH
Confidence            466777665433221           1223334469999999999999877664         13799999999998877


Q ss_pred             HHhccc
Q 020840          208 HHNLKC  213 (320)
Q Consensus       208 ~e~L~~  213 (320)
                      ++++..
T Consensus       116 ~~~~~~  121 (210)
T 3lbf_A          116 RRRLKN  121 (210)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.60  E-value=0.067  Score=47.24  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---------FGTVEGLELSADMLAIARRRNP   93 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---------SSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHhhCC
Confidence            3468999999999988776542         1268999999999887766543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.60  E-value=0.03  Score=47.71  Aligned_cols=49  Identities=16%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+.+..   |    ..+++.||+|+.+.+.-++++.
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~---~----~~~v~~vD~s~~~~~~a~~~~~   85 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLM---P----NGRIFALERNPQYLGFIRDNLK   85 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHC---T----TSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            44344699999999999998877652   2    2479999999999877666553

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.59  E-value=0.073  Score=45.91  Aligned_cols=45  Identities=11%  Similarity=0.142  Sum_probs=36.1

Q ss_pred             CcceEEEecCC-chhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPG-RGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG-~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+||| +|.++..+.+..        ..+++.||+|+.+.+.-++++.
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~--------~~~v~~vD~s~~~~~~a~~~~~  100 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF--------NCKVTATEVDEEFFEYARRNIE  100 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH--------CCEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHHH
Confidence            34699999999 999998877653        2379999999999887776654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.58  E-value=0.028  Score=46.36  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=35.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~---------~~~v~~~D~~~~~~~~a~~~~~   95 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE---------VKSTTMADINRRAIKLAKENIK   95 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG---------SSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHHHHH
Confidence            4458999999999998876543         2379999999999887777664

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=95.54  E-value=0.011  Score=59.79  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC-cCc-------ccceeEEEEe
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNF-------TESLHIHLVE  198 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~-p~~-------~~~l~y~iVE  198 (320)
                      +.|.|+|+++|..+..+++            .|.+.+|+|.+||+|.|...+++++... +..       .....++-+|
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll------------~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~E  290 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEML------------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQE  290 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHH------------CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECC
T ss_pred             cCCeEeCCHHHHHHHHHHH------------hcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEe
Confidence            4689999999987766654            2334599999999999999988877531 110       1146799999


Q ss_pred             cChhhHHHHHHhc
Q 020840          199 CSPTLQKLQHHNL  211 (320)
Q Consensus       199 ~Sp~Lr~~Q~e~L  211 (320)
                      +++...+.-+..+
T Consensus       291 id~~~~~lA~~Nl  303 (544)
T 3khk_A          291 SNPTTWKLAAMNM  303 (544)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999988766654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.54  E-value=0.036  Score=54.06  Aligned_cols=74  Identities=16%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCc-C-----cccceeEEEEecC
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK-N-----FTESLHIHLVECS  200 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p-~-----~~~~l~y~iVE~S  200 (320)
                      ..|.|+|+.+|..+..+++           ......+|+|.|||+|.+...+.+.++... +     .....+++-+|++
T Consensus       149 ~~G~fyTP~~v~~~mv~~l-----------~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~  217 (445)
T 2okc_A          149 GAGQYFTPRPLIQAMVDCI-----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT  217 (445)
T ss_dssp             CCGGGCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred             cCCcccCcHHHHHHHHHHh-----------CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCC
Confidence            4689999988755444332           112235899999999999999988875321 0     0112468999999


Q ss_pred             hhhHHHHHHhc
Q 020840          201 PTLQKLQHHNL  211 (320)
Q Consensus       201 p~Lr~~Q~e~L  211 (320)
                      |...+.-+..+
T Consensus       218 ~~~~~lA~~nl  228 (445)
T 2okc_A          218 PLVVTLASMNL  228 (445)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99887666655

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.53  E-value=0.016  Score=50.78  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE---------GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH---------TCCEEEECSCHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCHHHHHHHhC---------CCcEEEEECCHHHHHHHHhh
Confidence            358999999999998766543         12589999999987766554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=95.53  E-value=0.027  Score=48.07  Aligned_cols=50  Identities=10%  Similarity=0.275  Sum_probs=38.6

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+++...  |    ..+++.||+|+.+.+.-++++.
T Consensus        34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~----~~~v~~vD~s~~~~~~a~~~~~   83 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGAGFYLPYLSKMVG--E----KGKVYAIDVQEEMVNYAWEKVN   83 (219)
T ss_dssp             TCCTTCEEEESSCTTCTTHHHHHHHHT--T----TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEecCCCHHHHHHHHHhC--C----CcEEEEEECCHHHHHHHHHHHH
Confidence            444456999999999999998887642  1    2379999999999887776654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=95.53  E-value=0.025  Score=52.02  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-+|+|+|||+|.++..+++..         .+++-||+|+.+.+.-++++.
T Consensus        25 ~~~~~~~VLDiG~G~G~lt~~L~~~~---------~~v~~vD~~~~~~~~a~~~~~   71 (285)
T 1zq9_A           25 ALRPTDVVLEVGPGTGNMTVKLLEKA---------KKVVACELDPRLVAELHKRVQ   71 (285)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHS---------SEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence            33344589999999999999887641         268999999999887777664

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.53  E-value=0.025  Score=49.46  Aligned_cols=81  Identities=10%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCC
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTP  235 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~  235 (320)
                      ++.....+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++...                   ..
T Consensus        51 ~~~~~~~~vLdiG~G~G~~~~~l~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~  103 (266)
T 3ujc_A           51 IELNENSKVLDIGSGLGGGCMYINEKY--------GAHTHGIDICSNIVNMANERVSGN-------------------NK  103 (266)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHTCCSC-------------------TT
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHhhcC-------------------CC
Confidence            444455699999999999999888754        137999999999988777765431                   12


Q ss_pred             eEee-cccccCC--CCCCEEEEEeccccccc
Q 020840          236 VSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       236 i~W~-~sleelp--~~~~~~iiANE~fDALP  263 (320)
                      +.+. .++.+++  .+..-+|+++.++..+|
T Consensus       104 ~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  134 (266)
T 3ujc_A          104 IIFEANDILTKEFPENNFDLIYSRDAILALS  134 (266)
T ss_dssp             EEEEECCTTTCCCCTTCEEEEEEESCGGGSC
T ss_pred             eEEEECccccCCCCCCcEEEEeHHHHHHhcC
Confidence            2221 1222222  23346888888887774

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=95.51  E-value=0.018  Score=52.56  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|.|+.  |..   .    ...+++.||+++.+.+.-++++.
T Consensus        22 ~~~VLEIG~G~G~lt~--l~~---~----~~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE--PVG---E----RLDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             TCCEEEECCTTTTTHH--HHH---T----TCSCEEEECCCHHHHHHHHTCTT
T ss_pred             cCEEEEECCCCcHHHH--hhh---C----CCCeEEEEECCHHHHHHHHHHhc
Confidence            3589999999999999  432   1    11248999999999988777664

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.50  E-value=0.041  Score=47.03  Aligned_cols=47  Identities=19%  Similarity=0.233  Sum_probs=37.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++...  |    ..+++.||+|+.+.+.-++++.
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~--~----~~~v~~vD~~~~~~~~a~~~~~  123 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVG--E----DGLVVSIERIPELAEKAERTLR  123 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC--C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            345999999999999998887651  1    1379999999999887777664

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.49  E-value=0.031  Score=47.06  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=50.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEee-
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-  239 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~-  239 (320)
                      ..+|+|+|||+|.++..+++.   .+     .+++.||+|+.+.+.-++++...                   ..+.+. 
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~---~~-----~~v~~~D~s~~~~~~a~~~~~~~-------------------~~i~~~~   95 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLG---GF-----PNVTSVDYSSVVVAAMQACYAHV-------------------PQLRWET   95 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHT---TC-----CCEEEEESCHHHHHHHHHHTTTC-------------------TTCEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHHc---CC-----CcEEEEeCCHHHHHHHHHhcccC-------------------CCcEEEE
Confidence            358999999999999887653   11     16999999999988777766420                   012221 


Q ss_pred             cccccC--CCCCCEEEEEeccccccc
Q 020840          240 AALEQV--PSGFPTIIVAHEFYDALP  263 (320)
Q Consensus       240 ~sleel--p~~~~~~iiANE~fDALP  263 (320)
                      .++.++  +.+..-+|+++-.+++++
T Consensus        96 ~d~~~~~~~~~~fD~v~~~~~~~~~~  121 (215)
T 2pxx_A           96 MDVRKLDFPSASFDVVLEKGTLDALL  121 (215)
T ss_dssp             CCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred             cchhcCCCCCCcccEEEECcchhhhc
Confidence            112222  223246889999998876

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.46  E-value=0.034  Score=46.87  Aligned_cols=47  Identities=13%  Similarity=-0.006  Sum_probs=37.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+|+|+|||+|.++..+++.+.  |    ..+++.||+|+.+.+.-++++..
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~--~----~~~v~~vD~s~~~~~~a~~~~~~   69 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVG--E----NGRVFGFDIQDKAIANTTKKLTD   69 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHC--T----TCEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHHHH
Confidence            35899999999999998887652  1    13799999999998877776643

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.45  E-value=0.032  Score=45.94  Aligned_cols=46  Identities=17%  Similarity=0.249  Sum_probs=35.6

Q ss_pred             CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .....+|+|+|||+|.++..+++..         .+++.||+|+.+.+.-++++.
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~---------~~v~~~D~~~~~~~~a~~~~~   76 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV---------RRVYAIDRNPEAISTTEMNLQ   76 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS---------SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc---------CEEEEEECCHHHHHHHHHHHH
Confidence            3344699999999999988776532         379999999998887766654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.42  E-value=0.042  Score=47.45  Aligned_cols=44  Identities=18%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+.+..         .+++.||+|+.+.+.-++++.
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~---------~~v~~vD~~~~~~~~a~~~~~  113 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV---------DKVVSVEINEKMYNYASKLLS  113 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS---------SEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc---------CEEEEEeCCHHHHHHHHHHHh
Confidence            34589999999999998877642         369999999999888777664

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.42  E-value=0.049  Score=48.81  Aligned_cols=43  Identities=12%  Similarity=0.107  Sum_probs=34.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~---------g~~v~~vD~s~~~~~~a~~~~~  163 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL---------GYDVTSWDHNENSIAFLNETKE  163 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHHH
Confidence            358999999999988876653         1379999999998877666554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.41  E-value=0.08  Score=46.93  Aligned_cols=82  Identities=10%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEe
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W  238 (320)
                      +...+|+|+|||+|.++..+.+.    +    ..+++.||+|+.+.+.-++++....                ...++.+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~----~----~~~v~gvD~s~~~~~~a~~~~~~~~----------------~~~~v~~  100 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH----V----TGQVTGLDFLSGFIDIFNRNARQSG----------------LQNRVTG  100 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT----C----SSEEEEEESCHHHHHHHHHHHHHTT----------------CTTTEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc----c----CCEEEEEeCCHHHHHHHHHHHHHcC----------------CCcCcEE
Confidence            34569999999999998877643    2    2479999999998887776654310                0012332


Q ss_pred             e-cccccCC--CCCCEEEEEecccccccc
Q 020840          239 H-AALEQVP--SGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       239 ~-~sleelp--~~~~~~iiANE~fDALPv  264 (320)
                      . .++.+++  .+..-+|+++.++..+..
T Consensus       101 ~~~d~~~~~~~~~~fD~i~~~~~~~~~~~  129 (267)
T 3kkz_A          101 IVGSMDDLPFRNEELDLIWSEGAIYNIGF  129 (267)
T ss_dssp             EECCTTSCCCCTTCEEEEEESSCGGGTCH
T ss_pred             EEcChhhCCCCCCCEEEEEEcCCceecCH
Confidence            2 2233343  232468888888777643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=95.33  E-value=0.087  Score=46.70  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEe
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W  238 (320)
                      +...+|+|+|||+|.++..+.+.   .|    ..+++.||+|+.+.+.-++++.....                 ..+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~---~~----~~~v~~vD~s~~~~~~a~~~~~~~~~-----------------~~~~~   91 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKN---NP----DAEITSIDISPESLEKARENTEKNGI-----------------KNVKF   91 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHH---CT----TSEEEEEESCHHHHHHHHHHHHHTTC-----------------CSEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHHcCC-----------------CCcEE
Confidence            44569999999999999887764   23    24799999999998877776543110                 02322


Q ss_pred             e-cccccCC--CCCCEEEEEeccccccc
Q 020840          239 H-AALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       239 ~-~sleelp--~~~~~~iiANE~fDALP  263 (320)
                      . .++.+++  .+..-+|+++.+|..+|
T Consensus        92 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~  119 (276)
T 3mgg_A           92 LQANIFSLPFEDSSFDHIFVCFVLEHLQ  119 (276)
T ss_dssp             EECCGGGCCSCTTCEEEEEEESCGGGCS
T ss_pred             EEcccccCCCCCCCeeEEEEechhhhcC
Confidence            2 1222332  23245788888887776

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.31  E-value=0.021  Score=54.14  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       126 G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      +..|.|+|++++.....+.           +..+...+|+|+|||+|.++..+++...      ...+++-||+++.+.+
T Consensus        16 ~~~g~~~TP~~l~~~~~~~-----------~~~~~~~~vLD~gcGtG~~~~~~~~~~~------~~~~i~gvDi~~~~~~   78 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSL-----------AEAPRGGRVLEPACAHGPFLRAFREAHG------TAYRFVGVEIDPKALD   78 (421)
T ss_dssp             -----CCCCHHHHHHHHHH-----------CCCCTTCEEEEETCTTCHHHHHHHHHHC------SCSEEEEEESCTTTCC
T ss_pred             ccCceEeCCHHHHHHHHHh-----------hccCCCCEEEECCCCChHHHHHHHHHhC------CCCeEEEEECCHHHHH
Confidence            3578999987765443322           1222335999999999999988877642      1236889999987653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.22  E-value=0.019  Score=56.77  Aligned_cols=50  Identities=14%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             HHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       151 ~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .+.+.++....-+|+|+|||+|.++..+.+..   +    ..+++-||+|+.+.+.-
T Consensus       233 ~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~---g----~~~V~GVDis~~~l~~A  282 (433)
T 1u2z_A          233 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC---G----CALSFGCEIMDDASDLT  282 (433)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH---C----CSEEEEEECCHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC---C----CCEEEEEeCCHHHHHHH
Confidence            34444554455699999999999998877643   1    23689999999986544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.052  Score=49.19  Aligned_cols=47  Identities=23%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.+.      ...+++.||+|+.+.+.-++++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~------~~~~v~gvD~s~~~~~~a~~~~~   82 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELK------PFEQIIGSDLSATMIKTAEVIKE   82 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSS------CCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC------CCCEEEEEeCCHHHHHHHHHHHH
Confidence            346999999999999999886542      12479999999999877766654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.21  E-value=0.044  Score=52.21  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             hhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcc
Q 020840          110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT  189 (320)
Q Consensus       110 aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~  189 (320)
                      .+|+.++.|+...               ++.+-+.....+..+.+.++.....+|+|+|||+|.++..+.+.        
T Consensus        72 ~~y~~~y~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--------  128 (416)
T 4e2x_A           72 LMFHEVYPYHSSG---------------SSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--------  128 (416)
T ss_dssp             HHSSTTCCCCGGG---------------CHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--------
T ss_pred             HhccCCccCcCcC---------------CHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--------
Confidence            4677666666542               12233333333333444455445569999999999988776542        


Q ss_pred             cceeEEEEecChhhHHHHHHh
Q 020840          190 ESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       190 ~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                       ..+++-||+|+.+.+.-+++
T Consensus       129 -g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          129 -GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             -TCEEEEECCCHHHHHHHHTT
T ss_pred             -CCcEEEECCCHHHHHHHHHc
Confidence             12799999999987765554

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=95.20  E-value=0.063  Score=51.05  Aligned_cols=47  Identities=11%  Similarity=0.094  Sum_probs=36.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++....      ..+++.||+|+.+.+.-++++.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~------~~~v~gvD~s~~~l~~a~~~~~  129 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGE------HGKVIGVDMLDNQLEVARKYVE  129 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTT------TCEEEEEECCHHHHHHHHHTHH
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCC------CCEEEEEECCHHHHHHHHHHHH
Confidence            3468999999999999888776521      2379999999998887776653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=95.16  E-value=0.019  Score=52.15  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=34.7

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      +....-+|+|+|||+|.++..+++.    +    ..+++.||+++.+.+.-+++
T Consensus        28 ~~~~~~~VLDiG~G~G~lt~~L~~~----~----~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           28 NIEEGNTVVEVGGGTGNLTKVLLQH----P----LKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHTTS----C----CSEEEEECCCHHHHHHHTTS
T ss_pred             CCCCcCEEEEEcCchHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHhc
Confidence            3333458999999999998877542    1    23799999999998876654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=95.15  E-value=0.039  Score=45.64  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=34.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++.
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~----~----~~~v~~vD~~~~~~~~a~~~~~   88 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSR----G----MDKSICIEKNFAALKVIKENIA   88 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEeCCccCHHHHHHHHc----C----CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999998876651    1    2379999999999877666654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.11  E-value=0.089  Score=47.54  Aligned_cols=94  Identities=13%  Similarity=-0.035  Sum_probs=52.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcccc--ccCCcCcccchhhhcccCCCCeEe
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM--DENNANDNVEERTISSLAGTPVSW  238 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~--~~~~~~~~~~~~~~~~~~~~~i~W  238 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++....  .+...... .... -...+..+.|
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~---------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~  137 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR---------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIA-GAKV-FKSSSGSISL  137 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTST-TCEE-EEETTSSEEE
T ss_pred             CCeEEEeCCCCcHHHHHHHHC---------CCeEEEEECCHHHHHHHHHhcccccccccccccc-cccc-cccCCCceEE
Confidence            458999999999998766542         126999999999987655543210  00000000 0000 0000124554


Q ss_pred             e-cccccCCC---CCCEEEEEecccccccce
Q 020840          239 H-AALEQVPS---GFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       239 ~-~sleelp~---~~~~~iiANE~fDALPv~  265 (320)
                      . .++.+++.   +..-+|+++-+|.++|..
T Consensus       138 ~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~  168 (252)
T 2gb4_A          138 YCCSIFDLPRANIGKFDRIWDRGALVAINPG  168 (252)
T ss_dssp             EESCTTTGGGGCCCCEEEEEESSSTTTSCGG
T ss_pred             EECccccCCcccCCCEEEEEEhhhhhhCCHH
Confidence            3 23344432   334678899999999864

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.11  E-value=0.048  Score=45.45  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=34.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +-+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~   75 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN---------GYDVDAWDKNAMSIANVERIKS   75 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHHH
Confidence            359999999999998876653         1379999999998887766554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.10  E-value=0.052  Score=48.60  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=32.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .+|+|+|||+|.++..+++.         ..+++-||+|+.+.+.-++++
T Consensus        59 ~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~l~~a~~~~   99 (293)
T 3thr_A           59 HRVLDVACGTGVDSIMLVEE---------GFSVTSVDASDKMLKYALKER   99 (293)
T ss_dssp             CEEEETTCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEecCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHhh
Confidence            58999999999998887653         127999999999877655543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=95.08  E-value=0.049  Score=47.67  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+...        .+++.||+|+.+.+.-++++.
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~--------~~v~~vD~~~~~~~~a~~~~~  135 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVK--------TDVYTIERIPELVEFAKRNLE  135 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHC--------SCEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhC--------CEEEEEeCCHHHHHHHHHHHH
Confidence            35899999999999998877542        269999999999887777664

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.07  E-value=0.03  Score=49.37  Aligned_cols=44  Identities=7%  Similarity=0.176  Sum_probs=34.2

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+.+..         -+++.||+|+.+.+.-++++.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~---------~~v~gvD~s~~~l~~a~~~~~   80 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV---------KKVVAFDLTEDILKVARAFIE   80 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS---------SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence            34699999999999888765421         179999999999887766653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=95.05  E-value=0.065  Score=47.31  Aligned_cols=46  Identities=11%  Similarity=0.227  Sum_probs=36.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .+|+|+|||+|..+..+++.+.      ...+++.||+|+.+.+.-++++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~~  103 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLA------DNTTLTCIDPESEHQRQAKALFRE  103 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSC------TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHhCC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence            4899999999999998887642      124799999999998877776643

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.03  E-value=0.06  Score=49.71  Aligned_cols=71  Identities=17%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHH----cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          134 SPEVSQMFGEMVGVWAMCLWEQ----MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       134 SpEIsp~FGe~IA~~i~~~w~~----~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      .|+....|...++.+.......    ...+...+|+|+|||+|.++..+++..   |.    ++++.+|+ |.+.+.-++
T Consensus       139 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~-~~~~~~a~~  210 (332)
T 3i53_A          139 DPVLSASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAH---ED----LSGTVLDL-QGPASAAHR  210 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhHHhhHHHHHHhCCCCCCCEEEEeCCChhHHHHHHHHHC---CC----CeEEEecC-HHHHHHHHH
Confidence            4566666766665543322211    222345699999999999999887653   33    47899999 877766665


Q ss_pred             hcc
Q 020840          210 NLK  212 (320)
Q Consensus       210 ~L~  212 (320)
                      ++.
T Consensus       211 ~~~  213 (332)
T 3i53_A          211 RFL  213 (332)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.03  E-value=0.03  Score=49.03  Aligned_cols=44  Identities=11%  Similarity=0.110  Sum_probs=33.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+    .+    ..+++.||+|+.+.+.-+++..
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~----~~----~~~v~gvD~s~~~l~~a~~~~~  104 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQE----AP----IDEHWIIECNDGVFQRLRDWAP  104 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHT----SC----EEEEEEEECCHHHHHHHHHHGG
T ss_pred             CCeEEEEeccCCHHHHHHHh----cC----CCeEEEEcCCHHHHHHHHHHHH
Confidence            36899999999998877632    11    1268999999999887776654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.02  E-value=0.055  Score=49.49  Aligned_cols=62  Identities=19%  Similarity=0.325  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..|-|+|+...+..     .|.+.+|+++|+|.|.++..+++.   .+    ..+++.||++|.+.+.-++.+.
T Consensus        59 ~~y~e~l~~~~l~~-----~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           59 FVYHEMVAHVPLFT-----HPNPEHVLVVGGGDGGVIREILKH---PS----VKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             HHHHHHHHHHHHHH-----SSSCCEEEEESCTTCHHHHHHTTC---TT----CSEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHhh-----CCCCCEEEEECCchHHHHHHHHhC---CC----CceEEEEECCHHHHHHHHHHhH
Confidence            35667776543211     244569999999999998877642   12    2479999999999888777663

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.00  E-value=0.056  Score=46.10  Aligned_cols=43  Identities=19%  Similarity=0.075  Sum_probs=33.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+.   .+      +++.||+|+.+.+.-++++.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~---~~------~v~~vD~s~~~~~~a~~~~~   81 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDY---GF------EVVGVDISEDMIRKAREYAK   81 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT---TC------EEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHc---CC------EEEEEECCHHHHHHHHHHHH
Confidence            469999999999988665542   12      79999999999887666653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=94.99  E-value=0.065  Score=49.64  Aligned_cols=60  Identities=18%  Similarity=0.389  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       140 ~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .|-++++...+     ...+.+.+|+|+|||.|.++..+++.   .    ...+++.||+|+.+.+..++.+
T Consensus        80 ~y~e~l~~~~l-----~~~~~~~~VLdiG~G~G~~~~~l~~~---~----~~~~v~~vDid~~~i~~a~~~~  139 (304)
T 3bwc_A           80 VYHEVLGHTSL-----CSHPKPERVLIIGGGDGGVLREVLRH---G----TVEHCDLVDIDGEVMEQSKQHF  139 (304)
T ss_dssp             HHHHHHHHHHH-----TTSSSCCEEEEEECTTSHHHHHHHTC---T----TCCEEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHhhhhh-----hcCCCCCeEEEEcCCCCHHHHHHHhC---C----CCCEEEEEECCHHHHHHHHHHh
Confidence            56666654322     22344569999999999999888753   1    1247999999999998888776

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=94.97  E-value=0.03  Score=47.52  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-+++
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADR---------GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTT---------TCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCCCCCHHHHHHHHC---------CCEEEEEcCCHHHHHHHHHh
Confidence            69999999999988776543         23799999999987766554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=94.95  E-value=0.085  Score=44.74  Aligned_cols=44  Identities=14%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+    .+    ..+++.||+|+.+.+.-++++.
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~----~~----~~~v~~vD~s~~~~~~a~~~~~  104 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHK----LG----AKSVLATDISDESMTAAEENAA  104 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHH----TT----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            35899999999998887543    22    2379999999999877666654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=94.95  E-value=0.035  Score=48.36  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|.++..+.+.   .|+    .+++-||+|+.+.+.-++++.
T Consensus        40 ~~vLDiGcG~G~~~~~la~~---~p~----~~v~giD~s~~~l~~a~~~~~   83 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQ---NPD----INYIGIELFKSVIVTAVQKVK   83 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHH---CTT----SEEEEECSCHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCHHHHHHHHH---CCC----CCEEEEEechHHHHHHHHHHH
Confidence            48999999999998877553   333    479999999998776655543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=94.91  E-value=0.086  Score=43.37  Aligned_cols=43  Identities=14%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||.|.++..+.+.         ..+++.||+|+.+.+.-++++
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---------~~~v~~~D~~~~~~~~a~~~~   88 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ---------GHDVLGTDLDPILIDYAKQDF   88 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC---------CCcEEEEcCCHHHHHHHHHhC
Confidence            3459999999999998877653         137999999999887776655

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=94.91  E-value=0.061  Score=48.28  Aligned_cols=46  Identities=9%  Similarity=0.044  Sum_probs=36.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +-+|+|+|||.|.+|.-+...   .|    ..+|+.+|+|+.+.+.-++++..
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~---~p----~a~~~A~Di~~~~leiar~~~~~   95 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNE---NE----KIIYHAYDIDRAEIAFLSSIIGK   95 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCS---SC----CCEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CC----CCEEEEEeCCHHHHHHHHHHHHh
Confidence            459999999999999876432   23    23899999999999988887753

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.90  E-value=0.074  Score=46.70  Aligned_cols=51  Identities=25%  Similarity=0.225  Sum_probs=38.9

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.....+|+|+|||+|.++..+++.+.      ...+++.||+|+.+.+.-++++.
T Consensus        89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~  139 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGSGALTLFLANIVG------PEGRVVSYEIREDFAKLAWENIK  139 (255)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHC------TTSEEEEECSCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEecCCchHHHHHHHHHhC------CCeEEEEEecCHHHHHHHHHHHH
Confidence            3443446899999999999999887642      12479999999998887777664

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=94.90  E-value=0.04  Score=47.45  Aligned_cols=44  Identities=11%  Similarity=0.246  Sum_probs=34.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|.++..+.+.   .|    ..+++-||+|+.+.+.-++++.
T Consensus        43 ~~vLDiGcG~G~~~~~la~~---~p----~~~v~gvD~s~~~l~~a~~~~~   86 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQ---NP----DINYIGIDIQKSVLSYALDKVL   86 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHH---CT----TSEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHH---CC----CCCEEEEEcCHHHHHHHHHHHH
Confidence            48999999999998877654   23    2479999999999876666553

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=94.88  E-value=0.059  Score=46.87  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=43.1

Q ss_pred             eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       131 FiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .+..|+...++...+...+         +...+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++
T Consensus        28 ~~~~~~~~~l~~~~~~~~~---------~~~~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           28 VLSGPDPELTFDLWLSRLL---------TPQTRVLEAGCGHGPDAARFGPQ---------AARWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             EESSSCTTHHHHHHHHHHC---------CTTCEEEEESCTTSHHHHHHGGG---------SSEEEEEESCHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhcC---------CCCCeEEEeCCCCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHh
Confidence            3455666666666554321         22358999999999988776543         23799999999988766655

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=94.88  E-value=0.068  Score=43.38  Aligned_cols=42  Identities=19%  Similarity=0.185  Sum_probs=33.2

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+.   .+      .++-||+|+.+.+.-++++.
T Consensus        43 ~~vLD~GcG~G~~~~~l~~~---~~------~v~~vD~~~~~~~~a~~~~~   84 (171)
T 1ws6_A           43 GRFLDPFAGSGAVGLEAASE---GW------EAVLVEKDPEAVRLLKENVR   84 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHT---TC------EEEEECCCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCcCHHHHHHHHC---CC------eEEEEeCCHHHHHHHHHHHH
Confidence            48999999999998877653   11      38999999999887776654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=94.86  E-value=0.049  Score=54.16  Aligned_cols=65  Identities=17%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      +..|||+....+..+...++....-.|+++|||+|.++..+...   .+    .-+++-||+|+.+.+.-++
T Consensus       151 ~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~---~g----~~kVvGIDiS~~~lelAr~  215 (438)
T 3uwp_A          151 PEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAA---TN----CKHHYGVEKADIPAKYAET  215 (438)
T ss_dssp             GGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHH---CC----CSEEEEEECCHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHHH
Confidence            45788888888888888777655669999999999998877543   12    1258999999977654443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=94.81  E-value=0.058  Score=46.76  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=35.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+.+.      ...+++.||+||.+.+.-++++.
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~  104 (221)
T 3u81_A           60 SLVLELGAYCGYSAVRMARLLQ------PGARLLTMEINPDCAAITQQMLN  104 (221)
T ss_dssp             SEEEEECCTTSHHHHHHHTTSC------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHhCC------CCCEEEEEeCChHHHHHHHHHHH
Confidence            4899999999999988776432      13479999999999887666554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=94.79  E-value=0.027  Score=51.42  Aligned_cols=48  Identities=6%  Similarity=-0.044  Sum_probs=35.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ...+|+|+|||+|.++..+...  ..|    ..+++.||+|+.+.+.-++++..
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~--~~~----~~~v~gvD~s~~~~~~a~~~~~~  165 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYS--ACP----GVQLVGIDYDPEALDGATRLAAG  165 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCT--TCT----TCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHh--cCC----CCeEEEEECCHHHHHHHHHHHHh
Confidence            3468999999999987765311  122    35799999999998887777653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=94.78  E-value=0.074  Score=43.95  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=34.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++.
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~----~----~~~v~~vD~~~~~~~~a~~~~~   75 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSR----G----MSAAVLVEKNRKAQAIIQDNII   75 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT----T----CCEEEEECCCHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCCHHHHHHHHc----C----CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999998877642    2    2379999999999887777664

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=94.76  E-value=0.077  Score=46.18  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=34.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus        80 ~~vLD~gcG~G~~~~~la~~---------~~~v~~vD~s~~~~~~a~~~~~  121 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALT---------GMRVIAIDIDPVKIALARNNAE  121 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEECccccCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999999888753         1479999999998887666554

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=94.75  E-value=0.065  Score=46.38  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=35.9

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~---------~~~v~~vD~s~~~~~~a~~~~~   98 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLA---------GGRAITIEPRADRIENIQKNID   98 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            3334468999999999998877653         2369999999999877666553

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=94.74  E-value=0.1  Score=45.76  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=36.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+++.+.      ...+++.||+|+.+.+.-++++.
T Consensus        62 ~~VLdiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~  106 (239)
T 2hnk_A           62 KRIIEIGTFTGYSSLCFASALP------EDGKILCCDVSEEWTNVARKYWK  106 (239)
T ss_dssp             SEEEEECCTTCHHHHHHHHHSC------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCHHHHHHHHhCC------CCCEEEEEECCHHHHHHHHHHHH
Confidence            4899999999999998877542      12479999999999887777664

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=94.72  E-value=0.035  Score=48.55  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++..
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~--------~~~v~~vD~s~~~~~~a~~~~~~  124 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL--------FREVDMVDITEDFLVQAKTYLGE  124 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT--------CSEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--------CCEEEEEeCCHHHHHHHHHHhhh
Confidence            4699999999999888765431        23799999999998887776643

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=94.71  E-value=0.057  Score=46.32  Aligned_cols=40  Identities=13%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      ...+|+|+|||+|.++..+.+.   .|    ..+++-||+|+.+.+.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~---~p----~~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQ---NP----SRLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHH---CT----TEEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHH---CC----CCEEEEEECCHHHHHH
Confidence            3468999999999999888763   22    2479999999996553

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=94.71  E-value=0.078  Score=45.69  Aligned_cols=45  Identities=13%  Similarity=0.065  Sum_probs=35.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||.|.++..+++.+   |   ...+++.||+|+.+.+.-++++.
T Consensus        71 ~~vLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~~~~~~~~a~~~~~  115 (229)
T 2avd_A           71 KKALDLGTFTGYSALALALAL---P---ADGRVVTCEVDAQPPELGRPLWR  115 (229)
T ss_dssp             CEEEEECCTTSHHHHHHHTTS---C---TTCEEEEEESCSHHHHHHHHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999988876543   2   13479999999999888777764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=94.69  E-value=0.078  Score=47.25  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+++.+.  |    ..+++.||+|+.+.+.-++++.
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~--~----~~~v~~vD~~~~~~~~a~~~~~  145 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVG--P----AGQVISYEQRADHAEHARRNVS  145 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhC--C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            333345899999999999998887642  1    2379999999999887776654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.68  E-value=0.1  Score=46.12  Aligned_cols=44  Identities=11%  Similarity=0.179  Sum_probs=34.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||+|.++..+++.+   |    ..+++.||+|+.+.+.-+++.
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~---~----~~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADAL---P----EITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTC---T----TSEEEEEESCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCHHHHHHHHhC---C----CCeEEEEeCCHHHHHHHHHhC
Confidence            3589999999999998877643   2    237999999999887766654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=94.66  E-value=0.089  Score=45.98  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+++.+.  |    ..+++.||+|+.+.+.-++++.
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~--~----~~~v~~~D~~~~~~~~a~~~~~  142 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVG--E----KGLVESYEARPHHLAQAERNVR  142 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhC--C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            333445899999999999998887642  1    2379999999999887777654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=94.66  E-value=0.097  Score=45.93  Aligned_cols=44  Identities=20%  Similarity=0.325  Sum_probs=35.2

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+++.   .|    ..+++.||+|+.+.+.-++++.
T Consensus        73 ~~vLDiG~G~G~~~~~la~~---~~----~~~v~~vD~~~~~~~~a~~~~~  116 (232)
T 3ntv_A           73 KNILEIGTAIGYSSMQFASI---SD----DIHVTTIERNETMIQYAKQNLA  116 (232)
T ss_dssp             CEEEEECCSSSHHHHHHHTT---CT----TCEEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEEeCchhHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999998877652   22    3479999999999887777664

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=94.64  E-value=0.071  Score=49.27  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       140 ~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .|-|+++......     .+.+.+|+|+|||+|.++..+++..   +    ..+++.||+||.+.+.-++.+.
T Consensus        75 ~y~e~l~~~~l~~-----~~~~~~VLdiG~G~G~~~~~l~~~~---~----~~~v~~vDid~~~~~~a~~~~~  135 (296)
T 1inl_A           75 MYHEMLAHVPMFL-----HPNPKKVLIIGGGDGGTLREVLKHD---S----VEKAILCEVDGLVIEAARKYLK  135 (296)
T ss_dssp             HHHHHHHHHHHHH-----SSSCCEEEEEECTTCHHHHHHTTST---T----CSEEEEEESCHHHHHHHHHHCH
T ss_pred             HHHHHHhHHHHhc-----CCCCCEEEEEcCCcCHHHHHHHhcC---C----CCEEEEEECCHHHHHHHHHHhH
Confidence            5667776543211     2344699999999999988876531   2    2479999999999888777663

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=94.60  E-value=0.083  Score=49.25  Aligned_cols=62  Identities=16%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|-++++...+.     ..+.+.+|+|+|||.|.++..+++..       ...+++.||++|.+.+.-++.+.
T Consensus        61 ~~Y~e~l~~~~l~-----~~~~~~~VLdiG~G~G~~~~~l~~~~-------~~~~v~~vDid~~~i~~ar~~~~  122 (314)
T 1uir_A           61 YIYHETLVHPAML-----THPEPKRVLIVGGGEGATLREVLKHP-------TVEKAVMVDIDGELVEVAKRHMP  122 (314)
T ss_dssp             HHHHHHHHHHHHH-----HSSCCCEEEEEECTTSHHHHHHTTST-------TCCEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHh-----cCCCCCeEEEEcCCcCHHHHHHHhcC-------CCCEEEEEECCHHHHHHHHHHhH
Confidence            3566776643221     12344699999999999988776531       12479999999999888777664

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=94.57  E-value=0.098  Score=44.73  Aligned_cols=45  Identities=16%  Similarity=0.070  Sum_probs=35.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|..+..+++.+   |.   ..+++.||+|+.+.+.-++++.
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~---~~---~~~v~~vD~~~~~~~~a~~~~~  102 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAI---SI---SSRVVMIDPDRDNVEHARRMLH  102 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTS---CT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999988876543   21   3479999999999887777664

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=94.54  E-value=0.043  Score=48.06  Aligned_cols=48  Identities=8%  Similarity=0.092  Sum_probs=36.1

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.....+|+|+|||+|.++..+.+.   .      .+++.||+|+.+.+.-++++.
T Consensus        17 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~------~~v~~vD~s~~~~~~a~~~~~   64 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGAGHTALAFSPY---V------QECIGVDATKEMVEVASSFAQ   64 (239)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGG---S------SEEEEEESCHHHHHHHHHHHH
T ss_pred             hCcCCCCEEEEEccCcCHHHHHHHHh---C------CEEEEEECCHHHHHHHHHHHH
Confidence            34445569999999999988876532   1      169999999999887766654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=94.53  E-value=0.068  Score=49.60  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=36.5

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.+.      ...+++-||+||.+.+.-++++.
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g------~~~~v~~vD~~~~~~~~a~~~~~  151 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVG------SQGRVISFEVRKDHHDLAKKNYK  151 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhC------CCceEEEEeCCHHHHHHHHHHHH
Confidence            345899999999999998887541      12368999999998877666654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=94.51  E-value=0.085  Score=49.12  Aligned_cols=63  Identities=14%  Similarity=0.284  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...|-++|+...+     ...+.+.+|+|+|||+|.++..+++.   .+    ..+++.||+++.+.+.-++.+.
T Consensus        78 e~~y~e~l~~~~l-----~~~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~ar~~~~  140 (304)
T 2o07_A           78 EFSYQEMIANLPL-----CSHPNPRKVLIIGGGDGGVLREVVKH---PS----VESVVQCEIDEDVIQVSKKFLP  140 (304)
T ss_dssp             HHHHHHHHHHHHH-----TTSSSCCEEEEEECTTSHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             chHHHHHHHHHHH-----hhCCCCCEEEEECCCchHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHhH
Confidence            4566677654221     22344569999999999998877643   12    2479999999999888777664

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=94.49  E-value=0.09  Score=48.21  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..|-++++.-.     ....+.+.+|+|+|||.|.++..+++.   .|    ..+++.||++|.+.+.-++.+..
T Consensus        62 ~~Y~e~l~~~~-----l~~~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           62 FAYHEMMTHVP-----MTVSKEPKNVLVVGGGDGGIIRELCKY---KS----VENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             HHHHHHHHHHH-----HTTSSSCCEEEEEECTTSHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHH-----HhcCCCCCeEEEEeCCcCHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHhHH
Confidence            34566654321     123345569999999999998887642   11    24799999999999988887753

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=94.49  E-value=0.14  Score=47.55  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=44.0

Q ss_pred             CChhHHHHHHHHHH----HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          135 PEVSQMFGEMVGVW----AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       135 pEIsp~FGe~IA~~----i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      |+....|...+...    +..+.+..+.....+|+|+|||+|.++..+++..   |    .++++.+|+ |.+.+.-+++
T Consensus       154 p~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---~----~~~~~~~D~-~~~~~~a~~~  225 (360)
T 1tw3_A          154 PDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA---P----HVSATVLEM-AGTVDTARSY  225 (360)
T ss_dssp             HHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC---T----TCEEEEEEC-TTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC---C----CCEEEEecC-HHHHHHHHHH
Confidence            44555565554311    1122333444445699999999999998887652   3    347899999 7776665555


Q ss_pred             cc
Q 020840          211 LK  212 (320)
Q Consensus       211 L~  212 (320)
                      +.
T Consensus       226 ~~  227 (360)
T 1tw3_A          226 LK  227 (360)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=94.48  E-value=0.07  Score=47.00  Aligned_cols=43  Identities=12%  Similarity=0.054  Sum_probs=32.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      -.|+|+|||+|.++..+.+.   .|+    ..++-||+|+.+.+.-++++
T Consensus        36 ~~vLDiGcG~G~~~~~lA~~---~p~----~~v~giD~s~~~l~~a~~~~   78 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAMAKD---RPE----QDFLGIEVHSPGVGACLASA   78 (218)
T ss_dssp             CEEEEESCTTCHHHHHHHHH---CTT----SEEEEECSCHHHHHHHHHHH
T ss_pred             CeEEEEeeeChHHHHHHHHH---CCC----CeEEEEEecHHHHHHHHHHH
Confidence            48999999999988877653   333    36999999999876555544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=94.47  E-value=0.05  Score=45.89  Aligned_cols=41  Identities=15%  Similarity=0.079  Sum_probs=32.6

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~   72 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL---------GYEVTAVDQSSVGLAKAKQLAQ   72 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT---------TCEEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCHhHHHHHhC---------CCeEEEEECCHHHHHHHHHHHH
Confidence            9999999999998766542         1379999999999877666653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=94.47  E-value=0.11  Score=44.72  Aligned_cols=45  Identities=7%  Similarity=0.054  Sum_probs=35.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|..+..+++.+   |   ...+++.||+|+.+.+.-++++.
T Consensus        66 ~~vLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~~~~~~~~a~~~~~  110 (225)
T 3tr6_A           66 KKVIDIGTFTGYSAIAMGLAL---P---KDGTLITCDVDEKSTALAKEYWE  110 (225)
T ss_dssp             SEEEEECCTTSHHHHHHHTTC---C---TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCcchHHHHHHHHhC---C---CCCEEEEEeCCHHHHHHHHHHHH
Confidence            489999999999988876543   2   13579999999998887777664

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=94.46  E-value=0.1  Score=46.83  Aligned_cols=50  Identities=24%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+++.+.  |    ..+++.||+|+...+.-++++.
T Consensus       109 ~~~~~~~VLDiG~G~G~~~~~la~~~~--~----~~~v~~vD~s~~~~~~a~~~~~  158 (277)
T 1o54_A          109 DVKEGDRIIDTGVGSGAMCAVLARAVG--S----SGKVFAYEKREEFAKLAESNLT  158 (277)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTT--T----TCEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhC--C----CcEEEEEECCHHHHHHHHHHHH
Confidence            433445899999999999998877532  1    2479999999998887776654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=94.45  E-value=0.1  Score=45.28  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||.|.++..+++.+   |    ..+++.||+|+.+.+.-++++.
T Consensus        56 ~~vLdiG~G~G~~~~~la~~~---~----~~~v~~vD~~~~~~~~a~~~~~   99 (233)
T 2gpy_A           56 ARILEIGTAIGYSAIRMAQAL---P----EATIVSIERDERRYEEAHKHVK   99 (233)
T ss_dssp             SEEEEECCTTSHHHHHHHHHC---T----TCEEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEecCCCcHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998877653   2    2479999999999887776654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=94.43  E-value=0.09  Score=49.06  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+++..   |    .++++.+|+ |.+.+.-++++.
T Consensus       179 ~~~~~~~vlDvG~G~G~~~~~l~~~~---~----~~~~~~~D~-~~~~~~a~~~~~  226 (374)
T 1qzz_A          179 DWSAVRHVLDVGGGNGGMLAAIALRA---P----HLRGTLVEL-AGPAERARRRFA  226 (374)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHC---T----TCEEEEEEC-HHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHC---C----CCEEEEEeC-HHHHHHHHHHHH
Confidence            33445699999999999998887653   3    347999999 877766665553

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.43  E-value=0.1  Score=46.15  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-+++..
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER---------GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT---------TCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCeEEEeCCCcCHHHHHHHHc---------CCeEEEEeCCHHHHHHHHhhcC
Confidence            459999999999998876542         1379999999999887666543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.40  E-value=0.12  Score=49.58  Aligned_cols=46  Identities=24%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .-+|+|+|||+|.++..+.+..   |    ..+++.||+|+.+.+.-++++..
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~---p----~~~V~gvD~s~~al~~Ar~n~~~  268 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKN---P----QAKVVFVDESPMAVASSRLNVET  268 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHC---T----TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCcchHHHHHHHHHC---C----CCEEEEEECcHHHHHHHHHHHHH
Confidence            3689999999999998887642   2    24799999999998877776643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=94.38  E-value=0.073  Score=47.32  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      +.+...+|+|+|||+|.++..+.+     +    ..+++-||+|+.+.+
T Consensus        31 ~~~~~~~vLDiGcG~G~~~~~l~~-----~----~~~v~gvD~s~~~~~   70 (261)
T 3ege_A           31 NLPKGSVIADIGAGTGGYSVALAN-----Q----GLFVYAVEPSIVMRQ   70 (261)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHT-----T----TCEEEEECSCHHHHH
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHh-----C----CCEEEEEeCCHHHHH
Confidence            333456999999999999988764     2    247999999997754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.37  E-value=0.059  Score=48.79  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+++.         ..+++-||+|+.+.+.-++++.
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~~  125 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDL---------GWEVTALELSTSVLAAFRKRLA  125 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTT---------TCCEEEEESCHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHHHHh
Confidence            38999999999998877653         1369999999999887766654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.36  E-value=0.12  Score=44.48  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+++.+   |   ...+++.||+|+.+.+.-++++.
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~~~~~~~~a~~~~~  104 (223)
T 3duw_A           60 RNILEIGTLGGYSTIWLARGL---S---SGGRVVTLEASEKHADIARSNIE  104 (223)
T ss_dssp             SEEEEECCTTSHHHHHHHTTC---C---SSCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876543   2   13479999999998877666654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=94.36  E-value=0.044  Score=47.90  Aligned_cols=46  Identities=15%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..-+|+|+|||+|+++..+++..   +    ..+++-||+|+.+.+.-+++..
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~---~----~~~v~gvD~s~~~~~~a~~~~~  119 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIA---D----KGIVYAIEYAPRIMRELLDACA  119 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHT---T----TSEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCEEEEEcccCCHHHHHHHHHc---C----CcEEEEEECCHHHHHHHHHHhh
Confidence            44589999999999998887653   2    2368999999998776555543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=94.35  E-value=0.076  Score=45.76  Aligned_cols=41  Identities=17%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+++.          .+++.||+|+.+.+.-++++.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~----------~~v~~vD~s~~~~~~a~~~~~   75 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH----------YEVTGVDLSEEMLEIAQEKAM   75 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT----------SEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHhhC----------CeEEEEECCHHHHHHHHHhhh
Confidence            58999999999988766432          379999999999887766653

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=94.35  E-value=0.042  Score=50.89  Aligned_cols=67  Identities=13%  Similarity=0.195  Sum_probs=43.2

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      .+|.  .|.+.+++..        .+++.   ++....-+|+|+|||+|.++..+++.         ..+++-||+|+.+
T Consensus        19 ~~Gq--~fl~~~~i~~--------~i~~~---~~~~~~~~VLDiG~G~G~lt~~La~~---------~~~v~~vDi~~~~   76 (299)
T 2h1r_A           19 FQGQ--HLLKNPGILD--------KIIYA---AKIKSSDIVLEIGCGTGNLTVKLLPL---------AKKVITIDIDSRM   76 (299)
T ss_dssp             ------CEECCHHHHH--------HHHHH---HCCCTTCEEEEECCTTSTTHHHHTTT---------SSEEEEECSCHHH
T ss_pred             cccc--ceecCHHHHH--------HHHHh---cCCCCcCEEEEEcCcCcHHHHHHHhc---------CCEEEEEECCHHH
Confidence            3553  6888776532        22222   23333458999999999999876542         1369999999999


Q ss_pred             HHHHHHhcc
Q 020840          204 QKLQHHNLK  212 (320)
Q Consensus       204 r~~Q~e~L~  212 (320)
                      .+.-++++.
T Consensus        77 ~~~a~~~~~   85 (299)
T 2h1r_A           77 ISEVKKRCL   85 (299)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766653

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=94.34  E-value=0.065  Score=51.66  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CCCCcccCC---CCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcC---CCCcceEEEecCCchhHHHHHHHHHhcCc
Q 020840          113 NPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG---QPNRVNLVELGPGRGTLMADLLRGASKFK  186 (320)
Q Consensus       113 ~P~~GYY~~---~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g---~p~~l~IvEiGaG~GtLa~DIL~~l~~~p  186 (320)
                      -|-.||..-   +..+|.  .|++.+.|..        .|++...-..   .+....|+|||||.|.|...+|+..+   
T Consensus        15 ~~~~~~~~~~~~kk~lGQ--nFL~d~~i~~--------~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~---   81 (353)
T 1i4w_A           15 VPIPGIKDISKLKFFYGF--KYLWNPTVYN--------KIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC---   81 (353)
T ss_dssp             -CCCCCCTTCSSCCGGGC--CCBCCHHHHH--------HHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC---
T ss_pred             CcccchhhccCCCCCCCc--CccCCHHHHH--------HHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC---
Confidence            355566543   234664  5999877642        2222221111   11236899999999999999998542   


Q ss_pred             CcccceeEEEEecChhhHHHHHHhc
Q 020840          187 NFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       187 ~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                          .-+++.||+.+.|...-++++
T Consensus        82 ----~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           82 ----PRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             ----CSEEEEECCCHHHHHHHHHHT
T ss_pred             ----CCEEEEEecCHHHHHHHHHhc
Confidence                125899999999988777765

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=94.33  E-value=0.12  Score=45.62  Aligned_cols=45  Identities=9%  Similarity=0.039  Sum_probs=36.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||.|..+..+++.+..      ..+++.||+|+.+.+.-++++.
T Consensus        72 ~~VLeiG~G~G~~~~~la~~~~~------~~~v~~iD~~~~~~~~a~~~~~  116 (237)
T 3c3y_A           72 KKTIEVGVFTGYSLLLTALSIPD------DGKITAIDFDREAYEIGLPFIR  116 (237)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSCT------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999999988876421      2479999999999888877764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.32  E-value=0.11  Score=45.73  Aligned_cols=48  Identities=21%  Similarity=0.140  Sum_probs=36.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.++ .+    ..+++-||+|+.+.+.-++++.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~-~~----~~~v~gvDis~~~l~~A~~~~~   98 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHR-RS----LRQVIASDVDPAPLELAAKNLA   98 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTG-GG----EEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhc-cC----CCeEEEEECCHHHHHHHHHHHH
Confidence            457999999999999888876531 11    2479999999999876665553

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=94.32  E-value=0.12  Score=44.94  Aligned_cols=47  Identities=26%  Similarity=0.342  Sum_probs=36.7

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-+|+|+|||.|.++..+++.         ..+++.||+|+...+.-++++.
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~---------~~~v~~vD~~~~~~~~a~~~~~  134 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEV---------AGEVWTFEAVEEFYKTAQKNLK  134 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHH---------SSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHh---------CCEEEEEecCHHHHHHHHHHHH
Confidence            4333458999999999999988775         1379999999998887776653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=94.29  E-value=0.096  Score=49.17  Aligned_cols=62  Identities=16%  Similarity=0.323  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       140 ~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .|-++++...+.   .  .+.+.+|+|+|+|.|.++..+++.   .|    ..+++.||+||.+.+.-++.+..
T Consensus        93 ~Y~e~l~~l~l~---~--~~~~~~VLdIG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A           93 SYQEMLAHLPMF---A--HPDPKRVLIIGGGDGGILREVLKH---ES----VEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             HHHHHHHHHHHH---H--SSSCCEEEEESCTTSHHHHHHTTC---TT----CCEEEEECSCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHh---h--CCCCCEEEEEcCCcCHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            456666543221   1  233469999999999998887653   12    24799999999999988887753

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=94.28  E-value=0.08  Score=44.87  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=33.7

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||+|.++..+++.    +     .+++.||+|+.+.+.-++++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~----~-----~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN----G-----TRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT----T-----CEEEEEESSHHHHHHHHTTS
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc----C-----CeEEEEeCCHHHHHHHHHhC
Confidence            3469999999999988876542    2     37999999999887666554

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=94.27  E-value=0.19  Score=52.04  Aligned_cols=61  Identities=23%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCC-CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840          139 QMFGEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~  202 (320)
                      ..|-++|...+.+...+... .....|+.+|||||-|..-.+++.+...   .+++++-||.||.
T Consensus       335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~---~~vkVyAVEknp~  396 (637)
T 4gqb_A          335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD---RRIKLYAVEKNPN  396 (637)
T ss_dssp             HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTT---CEEEEEEEESCHH
T ss_pred             HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcC---CCcEEEEEECCHH
Confidence            56888998888764433222 2345788999999999888888876422   3467899999984

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=94.25  E-value=0.072  Score=47.94  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=36.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ...+|+|+|||+|.++..+....   |    ..+++.||+++.+.+.-++++..
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~---~----~~~v~gvDi~~~~~~~a~~n~~~   82 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARL---E----KAEVTLYERSQEMAEFARRSLEL   82 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHC---T----TEEEEEEESSHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCChHhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHHHh
Confidence            34589999999999988776542   2    25799999999998887777653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=94.23  E-value=0.061  Score=45.05  Aligned_cols=35  Identities=11%  Similarity=0.165  Sum_probs=28.7

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      -+|+|+|||+|.++..+.+.      .    +++-||+|+.+.+.
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~------~----~v~gvD~s~~~~~~   59 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKR------N----TVVSTDLNIRALES   59 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTT------S----EEEEEESCHHHHHT
T ss_pred             CeEEEeccCccHHHHHHHhc------C----cEEEEECCHHHHhc
Confidence            48999999999988776432      1    79999999998766

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=94.22  E-value=0.11  Score=49.18  Aligned_cols=62  Identities=16%  Similarity=0.306  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..|-|+|+...+     ...+.+.+|+|+|||+|.++..+++.   .|    ..+++.||+|+.+.+.-++++.
T Consensus       104 ~~y~e~L~~l~l-----~~~~~~~~VLdIG~G~G~~a~~la~~---~~----~~~V~~VDis~~~l~~Ar~~~~  165 (334)
T 1xj5_A          104 CAYQEMITHLPL-----CSIPNPKKVLVIGGGDGGVLREVARH---AS----IEQIDMCEIDKMVVDVSKQFFP  165 (334)
T ss_dssp             HHHHHHHHHHHH-----TTSSCCCEEEEETCSSSHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHH-----hhCCCCCEEEEECCCccHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            456676664321     22344569999999999988877642   12    2479999999999888777664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.16  E-value=0.13  Score=46.08  Aligned_cols=45  Identities=16%  Similarity=0.083  Sum_probs=36.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|..+..+++.+.   .   ..+++.||+|+.+.+.-++++.
T Consensus        81 ~~VLeiG~G~G~~~~~la~~~~---~---~~~v~~iD~s~~~~~~a~~~~~  125 (247)
T 1sui_A           81 KNTMEIGVYTGYSLLATALAIP---E---DGKILAMDINKENYELGLPVIK  125 (247)
T ss_dssp             CEEEEECCGGGHHHHHHHHHSC---T---TCEEEEEESCCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcCHHHHHHHHhCC---C---CCEEEEEECCHHHHHHHHHHHH
Confidence            4899999999999998877642   1   2479999999999888777664

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=94.13  E-value=0.065  Score=48.69  Aligned_cols=54  Identities=15%  Similarity=0.092  Sum_probs=38.7

Q ss_pred             HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...++..+.-+|+|+|||+|+++..+.+....      .-+++-||+||.+.+.-+++..
T Consensus        70 l~~l~ikpG~~VldlG~G~G~~~~~la~~VG~------~G~V~avD~s~~~~~~l~~~a~  123 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIASGTTASHMSDIIGP------RGRIYGVEFAPRVMRDLLTVVR  123 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTTSHHHHHHHHHHCT------TCEEEEEECCHHHHHHHHHHST
T ss_pred             hhhcCCCCCCEEEEecCcCCHHHHHHHHHhCC------CceEEEEeCCHHHHHHHHHhhH
Confidence            33444434469999999999999998876532      2358899999998765555443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.12  E-value=0.059  Score=46.61  Aligned_cols=47  Identities=17%  Similarity=0.102  Sum_probs=34.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..-+|+|+|||+|+++..+.+.+..      ..+++-||+|+.+.+..+++..
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~------~~~v~~vD~s~~~~~~~~~~~~  119 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGW------EGKIFGIEFSPRVLRELVPIVE  119 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCT------TSEEEEEESCHHHHHHHHHHHS
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCC------CeEEEEEECCHHHHHHHHHHHh
Confidence            3458999999999999988776421      1268999999987665555443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.06  E-value=0.17  Score=46.16  Aligned_cols=45  Identities=13%  Similarity=0.269  Sum_probs=34.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+++.    +    ..+|+.||+|+.+.+.-++++.
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~----~----~~~v~gvD~s~~~l~~a~~~~~   78 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG----R----INKLVCTDIADVSVKQCQQRYE   78 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT----T----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHhc----C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            3458999999999988877651    1    2379999999998876666553

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=94.06  E-value=0.12  Score=47.94  Aligned_cols=71  Identities=17%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             cCCChhHHHHHHHHHHHH---HHHHHcCCCC-cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          133 TSPEVSQMFGEMVGVWAM---CLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       133 TSpEIsp~FGe~IA~~i~---~~w~~~g~p~-~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      +.|+....|.........   .+....+... ..+|+|+|||+|.++..+++.   +|.    ++++.+|+ |...+.-+
T Consensus       148 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~  219 (352)
T 3mcz_A          148 HDTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRR---HPQ----LTGQIWDL-PTTRDAAR  219 (352)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHH---CTT----CEEEEEEC-GGGHHHHH
T ss_pred             cCHHHHHHHHHHHHhhhhhHHHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHh---CCC----CeEEEEEC-HHHHHHHH
Confidence            456666667665554322   2333333333 569999999999999988764   333    57899999 66555444


Q ss_pred             Hhc
Q 020840          209 HNL  211 (320)
Q Consensus       209 e~L  211 (320)
                      +++
T Consensus       220 ~~~  222 (352)
T 3mcz_A          220 KTI  222 (352)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=94.00  E-value=0.11  Score=48.13  Aligned_cols=44  Identities=7%  Similarity=0.055  Sum_probs=31.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ...+|+|+|||+|.++...++   ..     ..+++-||+|+.+.+.-+++.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~---~~-----~~~v~GiD~S~~~l~~A~~~~   91 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFY---GE-----IALLVATDPDADAIARGNERY   91 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHH---TT-----CSEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHh---cC-----CCeEEEEECCHHHHHHHHHHH
Confidence            346899999999975554332   11     126999999999987666654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=93.90  E-value=0.084  Score=46.41  Aligned_cols=44  Identities=16%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||+|.++..+...   .|    ..+++.||+|+.+.+.-+++.
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~---~~----~~~v~~vD~s~~~~~~a~~~~  114 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKIC---FP----HLHVTIVDSLNKRITFLEKLS  114 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHH---CT----TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCHHHHHHHHh---CC----CCEEEEEeCCHHHHHHHHHHH
Confidence            358999999999988876642   22    247999999998877665544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=93.90  E-value=0.12  Score=45.93  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+++.+   |   ...+++.||+|+.+.+.-++++.
T Consensus        65 ~~VLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~s~~~~~~a~~~~~  109 (248)
T 3tfw_A           65 KRILEIGTLGGYSTIWMAREL---P---ADGQLLTLEADAHHAQVARENLQ  109 (248)
T ss_dssp             SEEEEECCTTSHHHHHHHTTS---C---TTCEEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998776543   2   13579999999998887766654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=93.88  E-value=0.1  Score=48.89  Aligned_cols=63  Identities=19%  Similarity=0.242  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..|-|+++.....     ..+.+.+|+|+|||+|.++..+++.   .|    ..+++.||+||.+.+.-++++..
T Consensus       100 ~~y~e~l~~~~l~-----~~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A          100 FAYHEMMTHVPMT-----VSKEPKNVLVVGGGDGGIIRELCKY---KS----VENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             HHHHHHHHHHHHH-----HSSSCCEEEEEECTTCHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHh-----cCCCCCEEEEEcCCccHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHHHh
Confidence            3566776643221     1234469999999999998887642   12    24799999999999888877753

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=93.84  E-value=0.18  Score=43.31  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+.+.+.      ...+++.||+|+.+.+.-++++.
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~------~~~~v~~vD~s~~~~~~a~~~~~  123 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVG------CTGKVIGIDHIKELVDDSVNNVR  123 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHC------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHHH
Confidence            45899999999999998876542      12379999999999887666654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=93.84  E-value=0.08  Score=48.30  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=35.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+|+|+|||+|.++..+.+.+   +    ..+++-||+|+.+.+.-++++..
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~---~----~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKW---G----PSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHT---C----CSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCcEEEeCCCCCHHHHHHHHHc---C----CCEEEEECCCHHHHHHHHHHHHh
Confidence            3589999999999998887653   2    23799999999998877776643

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.84  E-value=0.08  Score=53.41  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC-cCc----------ccceeEE
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNF----------TESLHIH  195 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~-p~~----------~~~l~y~  195 (320)
                      ..|.|+|+.+|..+..+++           ......+|+|.+||+|.|...+.++++.. ++.          .....++
T Consensus       147 ~~G~fyTP~~iv~~mv~~l-----------~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~  215 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI  215 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE
T ss_pred             cCCeeeCCHHHHHHHHHHh-----------ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEE
Confidence            4699999998876644432           11123589999999999999999988642 221          0123699


Q ss_pred             EEecChhhHHHHHHhc
Q 020840          196 LVECSPTLQKLQHHNL  211 (320)
Q Consensus       196 iVE~Sp~Lr~~Q~e~L  211 (320)
                      -+|+++...+.-+.++
T Consensus       216 GiEid~~~~~lA~~nl  231 (541)
T 2ar0_A          216 GLELVPGTRRLALMNC  231 (541)
T ss_dssp             EEESCHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHH
Confidence            9999999887766554

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=93.82  E-value=0.1  Score=46.91  Aligned_cols=45  Identities=22%  Similarity=0.367  Sum_probs=35.3

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..++...   |    ..+++.||+|+.+.+.-++++.
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~---~----~~~v~~vD~s~~~l~~a~~n~~  154 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASER---P----DCEIIAVDRMPDAVSLAQRNAQ  154 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHC---T----TSEEEEECSSHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            3589999999999998876543   2    2479999999998877666554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=93.77  E-value=0.075  Score=46.29  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||+|.++..+.+..   +      +++-||+|+.+.+.-++++
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~---~------~v~gvD~s~~~~~~a~~~~   98 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFF---P------RVIGLDVSKSALEIAAKEN   98 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHS---S------CEEEEESCHHHHHHHHHHS
T ss_pred             CCeEEEEcCCCCHHHHHHHHhC---C------CEEEEECCHHHHHHHHHhC
Confidence            3589999999999998887642   1      5899999999887776655

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=93.76  E-value=0.16  Score=40.62  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      ..+|+|+|||+|.++..+++.+.  +    ..+++.||+|+ +.
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~--~----~~~v~~~D~~~-~~   59 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIG--G----KGRIIACDLLP-MD   59 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC--T----TCEEEEEESSC-CC
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhC--C----CCeEEEEECcc-cc
Confidence            45899999999999998877641  1    23799999999 54

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=93.74  E-value=0.067  Score=48.96  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       140 ~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .|-++++...+  . .  .+.+.+|+|+|||+|.++..+++.    +    ..+++.||++|.+.+.-++.+
T Consensus        60 ~y~e~l~~~~l--~-~--~~~~~~VLdiG~G~G~~~~~l~~~----~----~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           60 SYHEPLVHPAM--L-A--HPKPKRVLVIGGGDGGTVREVLQH----D----VDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             HHHHHHHHHHH--H-H--SSCCCEEEEEECTTSHHHHHHTTS----C----CSEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH--h-h--CCCCCeEEEEcCCcCHHHHHHHhC----C----CCEEEEEECCHHHHHHHHHHH
Confidence            46666653211  1 1  234468999999999999887653    2    247999999999998877776

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=93.71  E-value=0.079  Score=46.29  Aligned_cols=38  Identities=24%  Similarity=0.164  Sum_probs=29.3

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      ..-+|+|+|||+|.++..+.+...       ..+++-||+||.+.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~-------~~~V~gvD~s~~~l   94 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVD-------EGIIYAVEYSAKPF   94 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTT-------TSEEEEECCCHHHH
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcC-------CCEEEEEECCHHHH
Confidence            345899999999998887765431       13689999999754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=93.70  E-value=0.075  Score=47.39  Aligned_cols=43  Identities=21%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ...|+|||||+|.++..+.+   .+|+    ..++-||+|+.+.+.-+++
T Consensus        47 ~~~vLDiGcG~G~~~~~la~---~~p~----~~v~GiDis~~~l~~A~~~   89 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSP---LFPD----TLILGLEIRVKVSDYVQDR   89 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGG---GSTT----SEEEEEESCHHHHHHHHHH
T ss_pred             CCeEEEEccCCcHHHHHHHH---HCCC----CeEEEEECCHHHHHHHHHH
Confidence            35899999999998877643   2343    4799999999987654443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=93.69  E-value=0.15  Score=44.86  Aligned_cols=45  Identities=13%  Similarity=0.137  Sum_probs=35.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||.|..+..+++.+   |   ...+++.||+|+.+.+.-++++.
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~---~---~~~~v~~iD~~~~~~~~a~~~~~  118 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQL---P---PDGQIIACDQDPNATAIAKKYWQ  118 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTS---C---TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998887643   2   12479999999999887776654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=93.68  E-value=0.17  Score=46.78  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=36.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..-+|+|+|||.|.++..+.+...      ...+++.||+|+.+.+.-++++.
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~------~~~~v~gvD~s~~~~~~a~~~~~  121 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVG------EKGLVVSVEYSRKICEIAKRNVE  121 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCEEEEecCCchHHHHHHHHhcC------CCCEEEEEECCHHHHHHHHHHHH
Confidence            345999999999999988876532      12469999999999887777654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=93.67  E-value=0.26  Score=49.65  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .++.|  ++|+++|||.|.|+..+.+.         ..+++-||+|+.+.+.-+...
T Consensus        63 ~~~~~--~~vLDvGCG~G~~~~~la~~---------ga~V~giD~~~~~i~~a~~~a  108 (569)
T 4azs_A           63 ALGRP--LNVLDLGCAQGFFSLSLASK---------GATIVGIDFQQENINVCRALA  108 (569)
T ss_dssp             HHTSC--CEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHH
T ss_pred             hcCCC--CeEEEECCCCcHHHHHHHhC---------CCEEEEECCCHHHHHHHHHHH
Confidence            34554  79999999999998887552         126999999999877655543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=93.65  E-value=0.12  Score=45.41  Aligned_cols=45  Identities=11%  Similarity=0.092  Sum_probs=35.9

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..++....       ..+++.||+|+.+.+.-++++.
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~-------~~~v~gvD~s~~~~~~a~~~~~  110 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLN-------GWYFLATEVDDMCFNYAKKNVE  110 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH-------CCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChhHHHHHHHHhCC-------CCeEEEEECCHHHHHHHHHHHH
Confidence            45899999999999888776542       2479999999999887776664

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=93.62  E-value=0.13  Score=47.99  Aligned_cols=65  Identities=20%  Similarity=0.301  Sum_probs=44.3

Q ss_pred             cCCChhHHHHHHHHHHH----HHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          133 TSPEVSQMFGEMVGVWA----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       133 TSpEIsp~FGe~IA~~i----~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      +.|+....|....+.+.    ..+.+..+.+...+|+|+|||+|.++..+++..   |    .++++.+|.++.+.
T Consensus       153 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---p----~~~~~~~D~~~~~~  221 (348)
T 3lst_A          153 GDAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFLLTVLREH---P----GLQGVLLDRAEVVA  221 (348)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC---T----TEEEEEEECHHHHT
T ss_pred             hCHHHHHHHHHHHHHhhhhhHHHHHHhCCccCCceEEEECCccCHHHHHHHHHC---C----CCEEEEecCHHHhh
Confidence            34666667777665542    233344555566799999999999999888753   3    35789999955443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=93.61  E-value=0.23  Score=45.59  Aligned_cols=43  Identities=12%  Similarity=0.273  Sum_probs=34.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+...    |    ..+++.||+|+...+.-++++.
T Consensus       125 ~~vLDlG~GsG~~~~~la~~----~----~~~v~~vDis~~al~~A~~n~~  167 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKF----S----DAIVFATDVSSKAVEIARKNAE  167 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHH----S----SCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEEeCchhHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999999887764    2    2479999999999887776654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=93.61  E-value=0.42  Score=44.08  Aligned_cols=119  Identities=7%  Similarity=0.030  Sum_probs=67.9

Q ss_pred             CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCC---CCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcC
Q 020840           81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG  157 (320)
Q Consensus        81 ~~~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~---~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g  157 (320)
                      .+...|...|..+++.. |-=+|++|.+....+....-...   .--+|.. .|+-=|+--.++.+.    ++..    .
T Consensus        35 ~k~~~~~~Rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lt~~~t-~FfRd~~~f~~l~~~----llp~----~  104 (274)
T 1af7_A           35 HKRDMVYNRLVRRLRAL-GLDDFGRYLSMLEANQNSAEWQAFINALTTNLT-AFFREAHHFPILAEH----ARRR----H  104 (274)
T ss_dssp             GGHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHCTTCTHHHHHHHHHCCCCC-CTTTTTTHHHHHHHH----HHHS----C
T ss_pred             hhHHHHHHHHHHHHHHc-CCCCHHHHHHHHccCCCHHHHHHHHHHHhhcCc-cccCChHHHHHHHHH----ccCC----C
Confidence            45678888899888887 65689999877664332222111   1112322 343333332333322    1111    1


Q ss_pred             CCCcceEEEecCCchhHHHHHHHHHhc-CcCcccceeEEEEecChhhHHHHHHhc
Q 020840          158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                        .+.+|+++|||+|.-+..|.-.+.+ .+......+++-+|+|+.+-+.-++.+
T Consensus       105 --~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 --GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             --SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             --CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence              3589999999999954443333322 121111358999999999987766654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=93.47  E-value=0.11  Score=45.86  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=34.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ....|+|+|||+|.++..+.+..   |    ..+++-||+|+.+.+.-++++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~---~----~~~v~gvD~s~~~l~~a~~~~   93 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAF---P----EDLILGMEIRVQVTNYVEDRI   93 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHS---T----TSEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC---C----CCCEEEEEcCHHHHHHHHHHH
Confidence            34589999999999988876542   2    247999999999876555544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=93.46  E-value=0.27  Score=47.36  Aligned_cols=43  Identities=23%  Similarity=0.229  Sum_probs=35.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~---------g~~V~gvDis~~al~~A~~n~~  276 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARM---------GAEVVGVEDDLASVLSLQKGLE  276 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHT---------TCEEEEEESBHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999999887653         1379999999999887777664

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=93.45  E-value=0.075  Score=48.54  Aligned_cols=45  Identities=11%  Similarity=0.053  Sum_probs=35.5

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+-+|+|+|+|+|.++..+++.    +     .+++.||++|.+.+.-++.+.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~----~-----~~v~~veid~~~i~~ar~~~~  115 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY----D-----THIDFVQADEKILDSFISFFP  115 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS----S-----CEEEEECSCHHHHGGGTTTST
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC----C-----CEEEEEECCHHHHHHHHHHHH
Confidence            44569999999999998877653    1     279999999999887666653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=93.30  E-value=0.19  Score=42.19  Aligned_cols=49  Identities=10%  Similarity=0.005  Sum_probs=33.2

Q ss_pred             HHHHHHHcCC-CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840          149 AMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (320)
Q Consensus       149 i~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~  202 (320)
                      +.+..+..+. ....+|+|+|||+|.++..+++....     ...+++-||+|+.
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~-----~~~~v~gvD~s~~   59 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKN-----YKNKIIGIDKKIM   59 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTT-----SCEEEEEEESSCC
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCC-----CCceEEEEeCCcc
Confidence            3344444442 23468999999999999888765321     0247999999994

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=93.27  E-value=0.24  Score=47.13  Aligned_cols=44  Identities=18%  Similarity=0.011  Sum_probs=34.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|+++..+....   +    ..+++-+|+|+.+.+.-++++.
T Consensus       219 ~~vLD~gCGsG~~~i~~a~~~---~----~~~v~g~Dis~~~l~~A~~n~~  262 (373)
T 3tm4_A          219 GSVLDPMCGSGTILIELALRR---Y----SGEIIGIEKYRKHLIGAEMNAL  262 (373)
T ss_dssp             CCEEETTCTTCHHHHHHHHTT---C----CSCEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEccCcCcHHHHHHHHhC---C----CCeEEEEeCCHHHHHHHHHHHH
Confidence            589999999999887765432   1    1268999999999887777664

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=93.26  E-value=0.097  Score=44.10  Aligned_cols=44  Identities=11%  Similarity=0.064  Sum_probs=33.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..++..    +    ..+++.||+|+.+.+.-++++.
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~----~----~~~v~~vD~s~~~~~~a~~~~~   67 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVE----D----GYKTYGIEISDLQLKKAENFSR   67 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHH----T----TCEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHh----C----CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999986555532    1    1379999999999887666553

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=93.23  E-value=0.14  Score=46.02  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=38.3

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||.|.++..+++.+.  |    ..+++.||+|+...+.-++++.
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~--~----~~~v~~vD~s~~~~~~a~~~~~  156 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALN--G----KGTLTVVERDEDNLKKAMDNLS  156 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHT--T----SSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcC--C----CCEEEEEECCHHHHHHHHHHHH
Confidence            333446999999999999998887542  1    2379999999999887777664

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=93.19  E-value=0.19  Score=43.19  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..++..-        ..+++.||+|+.+.+.-++++.
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~--------~~~V~~vD~s~~~l~~a~~~~~   98 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRY--------AAGATLIEMDRAVSQQLIKNLA   98 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTT--------CSEEEEECSCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCcCHHHHHHHhcC--------CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999988765421        1269999999999887776654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=93.06  E-value=0.12  Score=45.11  Aligned_cols=39  Identities=18%  Similarity=0.128  Sum_probs=30.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      ..-+|+|+|||+|+++..+++.+.  |    ..+++-||+|+.+.
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g--~----~~~v~gvD~s~~~i  115 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVG--P----DGLVYAVEFSHRSG  115 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC--T----TCEEEEECCCHHHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhC--C----CcEEEEEECCHHHH
Confidence            345899999999999998887641  1    13689999998753

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=93.02  E-value=0.21  Score=46.76  Aligned_cols=44  Identities=18%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+++..   |    ..+++.||+|+.+.+.-++++.
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~---~----~~~v~~vD~s~~~l~~a~~~~~  241 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHS---P----KIRLTLCDVSAPAVEASRATLA  241 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHC---T----TCBCEEEESBHHHHHHHHHHHH
T ss_pred             CeEEEecCccCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876642   2    2368999999998877776664

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=93.00  E-value=0.12  Score=46.99  Aligned_cols=59  Identities=12%  Similarity=0.085  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEec-ChhhHHHHHHhc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC-SPTLQKLQHHNL  211 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~-Sp~Lr~~Q~e~L  211 (320)
                      ++.++.++....   ......+|+|+|||+|.++.-+.+.    .    ..+++.||+ |+.+.+.-++++
T Consensus        64 ~~~l~~~l~~~~---~~~~~~~vLDlG~G~G~~~~~~a~~----~----~~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           64 ARALADTLCWQP---ELIAGKTVCELGAGAGLVSIVAFLA----G----ADQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             HHHHHHHHHHCG---GGTTTCEEEETTCTTSHHHHHHHHT----T----CSEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc---hhcCCCeEEEecccccHHHHHHHHc----C----CCEEEEEeCCCHHHHHHHHHHH
Confidence            566777765432   1112348999999999988754431    1    126999999 888877666655

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=92.91  E-value=0.19  Score=45.94  Aligned_cols=45  Identities=11%  Similarity=0.225  Sum_probs=33.8

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ....+|+|+|||+|.++..+++..   |.    .+++.+|+| .+.+.-++++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~~-~~~~~a~~~~  208 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN---PN----AEIFGVDWA-SVLEVAKENA  208 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC---TT----CEEEEEECH-HHHHHHHHHH
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC---CC----CeEEEEecH-HHHHHHHHHH
Confidence            445799999999999998887653   32    479999999 6655555544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=92.90  E-value=0.32  Score=43.43  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+.+.        .. +++.||+||...+.-++++.
T Consensus       122 ~~VLDiGcG~G~l~~~la~~--------g~-~v~gvDi~~~~v~~a~~n~~  163 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKL--------GG-KALGVDIDPMVLPQAEANAK  163 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHT--------TC-EEEEEESCGGGHHHHHHHHH
T ss_pred             CEEEEecCCCcHHHHHHHHh--------CC-eEEEEECCHHHHHHHHHHHH
Confidence            58999999999998765441        11 79999999999887776654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=92.89  E-value=0.089  Score=45.24  Aligned_cols=43  Identities=19%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..++..   .     ..+++.||+|+.+.+.-++++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~---~-----~~~v~gvD~s~~~l~~a~~~~~   97 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSR---Q-----AKKVTFLELDKTVANQLKKNLQ   97 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHT---T-----CSEEEEECSCHHHHHHHHHHHH
T ss_pred             CeEEEcCCccCHHHHHHHHc---c-----CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999998876542   1     1269999999999887776664

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=92.82  E-value=0.21  Score=45.91  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             CCChhHHHHHHH--HHHHH-HHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          134 SPEVSQMFGEMV--GVWAM-CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       134 SpEIsp~FGe~I--A~~i~-~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      .|+....|.+.+  ..... .+....+... .+|+|+|||+|.++..+++..   |.    .+++.+|+ |.+.+.-+++
T Consensus       139 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~-~~~~~~a~~~  209 (334)
T 2ip2_A          139 CPDAGRRFLLAMKASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAE---PS----ARGVMLDR-EGSLGVARDN  209 (334)
T ss_dssp             CHHHHHHHHHHHGGGHHHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC---TT----CEEEEEEC-TTCTHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC---CC----CEEEEeCc-HHHHHHHHHH
Confidence            455555565554  11111 2223334344 699999999999998887653   33    47999999 7776665555


Q ss_pred             cc
Q 020840          211 LK  212 (320)
Q Consensus       211 L~  212 (320)
                      +.
T Consensus       210 ~~  211 (334)
T 2ip2_A          210 LS  211 (334)
T ss_dssp             TH
T ss_pred             Hh
Confidence            53

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=92.82  E-value=0.18  Score=47.40  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=30.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+|+|+|||+|.++..+++.    +    ..+++.||+|+ +.+.-++++.
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~----g----~~~V~~vD~s~-~~~~a~~~~~   93 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA----G----ARKIYAVEAST-MAQHAEVLVK   93 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT----T----CSEEEEEECST-HHHHHHHHHH
T ss_pred             cCEEEEcCCCccHHHHHHHhC----C----CCEEEEECCHH-HHHHHHHHHH
Confidence            358999999999998766542    1    23799999997 5454444443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=92.63  E-value=0.29  Score=43.91  Aligned_cols=46  Identities=17%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++..+...   .|    ..+++.||+|+...+.-++++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~---~~----~~~v~~vD~s~~~~~~a~~~~~  125 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIV---RP----ELELVLVDATRKKVAFVERAIE  125 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHH---CT----TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHH---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            4468999999999988776543   23    3479999999998877666554

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=92.48  E-value=0.29  Score=43.43  Aligned_cols=41  Identities=15%  Similarity=0.045  Sum_probs=31.3

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      -+|+|+|||+|..+.-+.+.++..   ....+++-||+|+.+.+
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~---~~~~~V~gvD~s~~~l~  123 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIM---GIDCQVIGIDRDLSRCQ  123 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHT---TCCCEEEEEESCCTTCC
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhc---CCCCEEEEEeCChHHHH
Confidence            489999999999999887764321   12347999999998743

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=92.47  E-value=0.13  Score=45.79  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=33.6

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|.++..+.+.   .+    . +++.||+++.+.+.-++++.
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~---~~----~-~v~gvDi~~~~~~~a~~n~~   93 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTR---TK----A-KIVGVEIQERLADMAKRSVA   93 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTT---CC----C-EEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchhHHHHHHHHh---cC----C-cEEEEECCHHHHHHHHHHHH
Confidence            458999999999988765432   11    1 79999999999887666654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=92.44  E-value=0.084  Score=47.23  Aligned_cols=60  Identities=13%  Similarity=0.120  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHc---CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          145 VGVWAMCLWEQM---GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       145 IA~~i~~~w~~~---g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +..|+...+.++   +.....+|+|+|||+|.++.-.+   +  +.   .-+++.||+|+.+.+.-++.+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~---~--~~---~~~v~g~D~s~~~l~~a~~~~~   99 (263)
T 2a14_A           37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA---C--DS---FQDITLSDFTDRNREELEKWLK   99 (263)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG---G--GT---EEEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHH---H--hh---hcceeeccccHHHHHHHHHHHh
Confidence            344554444433   33345689999999998653211   1  11   1269999999999887766654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=92.42  E-value=0.35  Score=45.60  Aligned_cols=52  Identities=19%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             HHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..++....-+|+|+|||.|.++.-++..+   +    ..+++-||+||.+.+.-++++.
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~---~----ga~V~gIDis~~~l~~Ar~~~~  167 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHV---Y----GMRVNVVEIEPDIAELSRKVIE  167 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHT---T----CCEEEEEESSHHHHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHc---c----CCEEEEEECCHHHHHHHHHHHH
Confidence            34455556799999999998877665432   2    2479999999999887776654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=92.38  E-value=0.27  Score=46.27  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             cCCChhHHHHHHHHHHHH----HHHHHcC-CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          133 TSPEVSQMFGEMVGVWAM----CLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       133 TSpEIsp~FGe~IA~~i~----~~w~~~g-~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      ..|+....|.+.++.+..    .+..... .+...+|+|+|||+|.++..+++..   |.    ++++.+|+ |.+.
T Consensus       177 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---~~----~~~~~~D~-~~~~  245 (372)
T 1fp1_D          177 KDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY---PL----IKGINFDL-PQVI  245 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-HHHH
T ss_pred             hCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC---CC----CeEEEeCh-HHHH
Confidence            457777778777655432    2233333 3455699999999999999887653   33    47889999 6554

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=92.31  E-value=0.22  Score=47.15  Aligned_cols=64  Identities=13%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             cCCChhHHHHHHHHHHHHHHH----HHcC-CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          133 TSPEVSQMFGEMVGVWAMCLW----EQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       133 TSpEIsp~FGe~IA~~i~~~w----~~~g-~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      +-|+....|....+.+-...+    .... .+...+|+|+|||+|.++..+++..   |.    ++++.+|. |.+.
T Consensus       171 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~-~~~~  239 (368)
T 3reo_A          171 TDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY---PS----INAINFDL-PHVI  239 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-HHHH
T ss_pred             hCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhC---CC----CEEEEEeh-HHHH
Confidence            346777778777665533222    2222 3445699999999999999887753   33    47899998 6543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=92.30  E-value=0.16  Score=45.80  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=31.5

Q ss_pred             CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      ....-+|+|+|||+|.++..+.+.+..      .-+++-||+||.+.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~------~G~V~avD~s~~~l  114 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIEL------NGKAYGVEFSPRVV  114 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTT------TSEEEEEECCHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCC------CCEEEEEECcHHHH
Confidence            334469999999999999988776532      23689999999763

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=92.18  E-value=0.13  Score=44.95  Aligned_cols=48  Identities=15%  Similarity=0.034  Sum_probs=34.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....+|+|+|||+|.++..+..   ..     ..+++.||+|+.+.+.-++++.
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~---~~-----~~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSAC---ES-----FTEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGG---GT-----EEEEEEEESCHHHHHHHHHHHT
T ss_pred             cccCCCEEEEECCCccHHHHHHhh---cc-----cCeEEEecCCHHHHHHHHHHHh
Confidence            333456899999999987765432   11     1379999999998877666664

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=92.16  E-value=0.25  Score=49.67  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=54.5

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC-cCc-----ccceeEEEEec
Q 020840          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNF-----TESLHIHLVEC  199 (320)
Q Consensus       126 G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~-p~~-----~~~l~y~iVE~  199 (320)
                      |+.|-|||+.+|..+..+++.           ....-+|++-.||+|.|.....+++++. +..     .....++-+|+
T Consensus       194 g~~GqfyTP~~Vv~lmv~l~~-----------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~  262 (530)
T 3ufb_A          194 GDSGEFYTPRPVVRFMVEVMD-----------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEA  262 (530)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHC-----------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECC
T ss_pred             CcCceECCcHHHHHHHHHhhc-----------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhc
Confidence            678999999999887665531           1122489999999999999999998642 221     22356899999


Q ss_pred             ChhhHHHHHHh
Q 020840          200 SPTLQKLQHHN  210 (320)
Q Consensus       200 Sp~Lr~~Q~e~  210 (320)
                      .+....+-+-.
T Consensus       263 ~~~~~~la~mN  273 (530)
T 3ufb_A          263 KSLPYLLVQMN  273 (530)
T ss_dssp             SHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99987766543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=92.08  E-value=0.12  Score=48.32  Aligned_cols=64  Identities=17%  Similarity=0.270  Sum_probs=40.8

Q ss_pred             cCCChhHHHHHHHHHHHHHH---HHHc--CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          133 TSPEVSQMFGEMVGVWAMCL---WEQM--GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       133 TSpEIsp~FGe~IA~~i~~~---w~~~--g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      ..|+....|.+.++.+....   ....  +.+...+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.
T Consensus       156 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~  224 (352)
T 1fp2_A          156 KNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICET---FPK----LKCIVFDR-PQVV  224 (352)
T ss_dssp             HCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHH
T ss_pred             hChHHHHHHHHHHHhcchhhhhHHHhcccccccCceEEEeCCCccHHHHHHHHH---CCC----CeEEEeeC-HHHH
Confidence            34566666776655433221   2222  1223469999999999999888764   343    47999999 7664

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=92.00  E-value=0.26  Score=46.24  Aligned_cols=44  Identities=14%  Similarity=0.143  Sum_probs=31.2

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..-+|+|+|||+|.++..+.+.    +    ..+++.||+|+ +.+.-++++.
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~----g----~~~v~gvD~s~-~~~~a~~~~~  107 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA----G----AKKVLGVDQSE-ILYQAMDIIR  107 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT----T----CSEEEEEESST-HHHHHHHHHH
T ss_pred             CCCEEEEeeccCcHHHHHHHHc----C----CCEEEEEChHH-HHHHHHHHHH
Confidence            3458999999999998766542    1    23799999998 5554455443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=92.00  E-value=0.71  Score=49.45  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=49.0

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      ..|.|+|+++|..+..++. ..+.    ....+...+|+|.|||+|.|+..+.+.+...    ...+++-+|+++.+.+.
T Consensus       293 k~GqFYTP~eLA~lMVeLA-~ill----~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei----~~~~IyGvEIDp~Al~L  363 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIIS-QHIL----GRPLTEDEVISDPAAGSGNLLATVSAGFNNV----MPRQIWANDIETLFLEL  363 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHH-HHHH----CSCCCTTCEEEETTCTTSHHHHHHHHTSTTC----CGGGEEEECSCGGGHHH
T ss_pred             cCceEcCCHHHHHHHHHHH-hhhc----cccCCCCCEEEECCCCccHHHHHHHHHhccc----CCCeEEEEECCHHHHHH
Confidence            4689999999876655442 1111    1112244699999999999988877655321    23568999999988765


Q ss_pred             H
Q 020840          207 Q  207 (320)
Q Consensus       207 Q  207 (320)
                      -
T Consensus       364 A  364 (878)
T 3s1s_A          364 L  364 (878)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=91.98  E-value=0.12  Score=45.69  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=28.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecC-hhhHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS-PTLQK  205 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S-p~Lr~  205 (320)
                      -.|+|+|||+|.++..+.+.   .|    ..+++-||+| +.+.+
T Consensus        26 ~~vLDiGCG~G~~~~~la~~---~~----~~~v~GvD~s~~~ml~   63 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAIN---DQ----NTFYIGIDPVKENLFD   63 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHT---CT----TEEEEEECSCCGGGHH
T ss_pred             CEEEEEeccCcHHHHHHHHh---CC----CCEEEEEeCCHHHHHH
Confidence            58999999999988876542   22    3479999999 77733

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=91.93  E-value=0.074  Score=47.26  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=39.9

Q ss_pred             CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       130 DFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      .|.+.+.+....-+           .++....-+|+|+|||.|.++..+++..         .+++.||+|+.+.+.
T Consensus        10 ~fl~~~~~~~~i~~-----------~~~~~~~~~VLDiG~G~G~~~~~l~~~~---------~~v~~id~~~~~~~~   66 (245)
T 1yub_A           10 NFLTSEKVLNQIIK-----------QLNLKETDTVYEIGTGKGHLTTKLAKIS---------KQVTSIELDSHLFNL   66 (245)
T ss_dssp             CBCCCTTTHHHHHH-----------HCCCCSSEEEEECSCCCSSCSHHHHHHS---------SEEEESSSSCSSSSS
T ss_pred             CCCCCHHHHHHHHH-----------hcCCCCCCEEEEEeCCCCHHHHHHHHhC---------CeEEEEECCHHHHHH
Confidence            48888776433222           2333344689999999999998877641         368999999988643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=91.92  E-value=0.11  Score=46.30  Aligned_cols=44  Identities=14%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      -+|+|+|||+|..+..+.+.+.      ...+++.||+|+.+.+.-++++
T Consensus        62 ~~VLDiG~G~G~~t~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~  105 (242)
T 3r3h_A           62 KKVLELGTFTGYSALAMSLALP------DDGQVITCDINEGWTKHAHPYW  105 (242)
T ss_dssp             SEEEEEESCCSHHHHHHHHTSC------TTCEEEEEECCCSSCCCSHHHH
T ss_pred             CEEEEeeCCcCHHHHHHHHhCC------CCCEEEEEECCHHHHHHHHHHH
Confidence            4899999999999988876542      1347999999998755444444

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=91.91  E-value=0.61  Score=42.00  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=34.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+++|||+|.++.-+...   .|    ..+++.||++|...+.-++++..
T Consensus        17 ~~VlDIGtGsG~l~i~la~~---~~----~~~V~avDi~~~al~~A~~N~~~   61 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVER---GQ----IKSAIAGEVVEGPYQSAVKNVEA   61 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHT---TS----EEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            58999999999999877542   12    23689999999988877776653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=91.85  E-value=0.097  Score=47.58  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      .-+|+|+|||+|.++..+.+.      +   .+++-||+|+.+.+
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~------~---~~v~gvD~s~~ml~   75 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEF------F---ERVHAVDPGEAQIR   75 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTT------C---SEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHh------C---CEEEEEeCcHHhhh
Confidence            358999999999988876542      1   25899999998764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=91.52  E-value=0.24  Score=44.24  Aligned_cols=39  Identities=10%  Similarity=0.206  Sum_probs=30.2

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      ...+|+|+|||+|.++..+++.    +    ..+++-||+|+.+.+.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~----g----~~~V~gvDis~~ml~~   75 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN----G----AKLVYALDVGTNQLAW   75 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT----T----CSEEEEECSSCCCCCH
T ss_pred             CCCEEEEEccCCCHHHHHHHhc----C----CCEEEEEcCCHHHHHH
Confidence            3458999999999998877653    1    1269999999988654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=91.12  E-value=0.82  Score=41.37  Aligned_cols=46  Identities=15%  Similarity=-0.021  Sum_probs=35.4

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .-+|+++|||+|.++.-+...   .|    ..+++-||++|...+.-++++..
T Consensus        22 g~~VlDIGtGsG~l~i~la~~---~~----~~~V~AvDi~~~al~~A~~N~~~   67 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQM---GY----CDFAIAGEVVNGPYQSALKNVSE   67 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHT---TC----EEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999876542   11    23689999999998877776653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=91.10  E-value=0.52  Score=39.16  Aligned_cols=42  Identities=7%  Similarity=0.031  Sum_probs=29.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcC--cCcccceeEEEEecChh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKF--KNFTESLHIHLVECSPT  202 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~--p~~~~~l~y~iVE~Sp~  202 (320)
                      ..+|+|+|||+|.++..+.+.+...  +..-...+++.||+|+.
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            4589999999999999887764210  00001147999999984

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=91.04  E-value=0.47  Score=44.78  Aligned_cols=62  Identities=19%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CCChhHHHHHHHHHHHHH----HHHHcC-CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          134 SPEVSQMFGEMVGVWAMC----LWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       134 SpEIsp~FGe~IA~~i~~----~w~~~g-~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      -|+....|....+.+-..    +..... .....+|+|+|||+|.++..+++..   |.    ++++.+|. |.+
T Consensus       170 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~-~~~  236 (364)
T 3p9c_A          170 DPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHY---PT----IKGVNFDL-PHV  236 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-HHH
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHC---CC----CeEEEecC-HHH
Confidence            456666777666554322    222233 3445699999999999999888753   43    46899998 544

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=90.83  E-value=0.79  Score=41.88  Aligned_cols=46  Identities=7%  Similarity=0.043  Sum_probs=35.3

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .-+|+++|||+|.++..+...   .    ...+++.||++|...+.-++++..
T Consensus        22 g~~VlDIGtGsG~l~i~la~~---~----~~~~V~avDi~~~al~~A~~N~~~   67 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKN---Q----TASFAIAGEVVDGPFQSAQKQVRS   67 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHT---T----SEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHh---C----CCCEEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999876542   1    123689999999998877776653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=90.73  E-value=0.41  Score=45.57  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=32.4

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ....+|+|+|||+|.++..+++.    .    ..+++.||+| .+.+.-++++.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~----g----~~~V~gvD~s-~~~~~a~~~~~  106 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA----G----ARKVYAVEAT-KMADHARALVK  106 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT----T----CSEEEEEESS-TTHHHHHHHHH
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc----C----CCEEEEEccH-HHHHHHHHHHH
Confidence            34469999999999998876653    1    1279999999 66555555554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=90.65  E-value=0.44  Score=44.16  Aligned_cols=44  Identities=7%  Similarity=-0.016  Sum_probs=36.1

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.+-+|+|+|||.|-|+.-+.          ...+|+.+|+++.+.+.-++.+.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----------~~~~y~a~DId~~~i~~ar~~~~  147 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----------GIASVWGCDIHQGLGDVITPFAR  147 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----------TCSEEEEEESBHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc----------cCCeEEEEeCCHHHHHHHHHHHH
Confidence            345699999999999998765          23579999999999988777664

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=90.65  E-value=0.55  Score=43.87  Aligned_cols=50  Identities=8%  Similarity=0.030  Sum_probs=37.4

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +....-.|+|+|||+|+++..+.....  |    ..+++-+|+|+.+.+.-++++.
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~--~----~~~v~g~Di~~~~i~~a~~n~~  249 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLG--P----TSPVYAGDLDEKRLGLAREAAL  249 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHC--T----TSCEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhC--C----CceEEEEECCHHHHHHHHHHHH
Confidence            433445899999999999887766541  1    2368999999999887777664

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=90.44  E-value=0.31  Score=45.52  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             cCCChhH--HHHHHHHHHHH---HHHHHc--CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          133 TSPEVSQ--MFGEMVGVWAM---CLWEQM--GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       133 TSpEIsp--~FGe~IA~~i~---~~w~~~--g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      ..|+...  .|.+.++.+..   .+....  +.....+|+|+|||+|.++..+++..   |.    ++++.+|. |.+
T Consensus       159 ~~p~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~-~~~  228 (358)
T 1zg3_A          159 KDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIF---PH----LKCTVFDQ-PQV  228 (358)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHC---TT----SEEEEEEC-HHH
T ss_pred             cChhhhhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHC---CC----CeEEEecc-HHH
Confidence            3466666  77666554321   122222  11123589999999999999887653   33    46889998 544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=90.42  E-value=0.93  Score=43.53  Aligned_cols=67  Identities=12%  Similarity=0.046  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhc-CcCc------------------------------ccc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF------------------------------TES  191 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~------------------------------~~~  191 (320)
                      |.||..++.   ..+......|++.|||+|+++........+ .|.+                              ...
T Consensus       181 e~lAa~ll~---~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          181 ETLAAGLIY---LTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             HHHHHHHHH---TSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             HHHHHHHHH---hhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            445555442   234444468999999999998777655432 1211                              012


Q ss_pred             eeEEEEecChhhHHHHHHhcc
Q 020840          192 LHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       192 l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+++-+|+++.+.+.-++++.
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~  278 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAE  278 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHH
Confidence            469999999999887777664

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=90.31  E-value=0.43  Score=44.87  Aligned_cols=44  Identities=14%  Similarity=0.303  Sum_probs=34.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.+.-++++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~~~~~  223 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQY---NKE----VEVTIVDL-PQQLEMMRKQTA  223 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHH---STT----CEEEEEEC-HHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcCHHHHHHHHh---CCC----CEEEEEeC-HHHHHHHHHHHH
Confidence            359999999999999988775   343    47999999 777666666554

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=90.11  E-value=1  Score=40.65  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=47.7

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|-|++-.+.+++-.+++           +....-+|+|+|||.|..+..+...+..      ..+++-||+|+...+.-
T Consensus        62 ~G~~~~qd~~s~l~~~~l-----------~~~~g~~VLDlgaG~G~~t~~la~~~~~------~~~v~avD~~~~~l~~~  124 (274)
T 3ajd_A           62 FGYYMPQSISSMIPPIVL-----------NPREDDFILDMCAAPGGKTTHLAQLMKN------KGTIVAVEISKTRTKAL  124 (274)
T ss_dssp             TTSEEECCSGGGHHHHHH-----------CCCTTCEEEETTCTTCHHHHHHHHHTTT------CSEEEEEESCHHHHHHH
T ss_pred             CCeEEEeCHHHHHHHHHh-----------CCCCcCEEEEeCCCccHHHHHHHHHcCC------CCEEEEECCCHHHHHHH
Confidence            677877777766544332           2222358999999999999988775421      24799999999987766


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++++.
T Consensus       125 ~~~~~  129 (274)
T 3ajd_A          125 KSNIN  129 (274)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=90.10  E-value=0.36  Score=44.94  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+.+.    +    ..+++.||+|+ +.+.-++++.
T Consensus        40 ~~VLDiGcGtG~ls~~la~~----g----~~~v~~vD~s~-~~~~a~~~~~   81 (328)
T 1g6q_1           40 KIVLDVGCGTGILSMFAAKH----G----AKHVIGVDMSS-IIEMAKELVE   81 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHT----C----CSEEEEEESST-HHHHHHHHHH
T ss_pred             CEEEEecCccHHHHHHHHHC----C----CCEEEEEChHH-HHHHHHHHHH
Confidence            48999999999998765542    2    13799999996 5444444443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=90.03  E-value=1.9  Score=41.58  Aligned_cols=67  Identities=13%  Similarity=0.065  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhc-CcCc------------------------------ccc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF------------------------------TES  191 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~------------------------------~~~  191 (320)
                      |.||..++.   ..+......|++.|||+||++........+ .|.+                              -..
T Consensus       187 e~lAa~ll~---l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          187 ETMAAALVL---LTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             HHHHHHHHH---HSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHH---HhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            445555442   244444468999999999998665544332 1211                              012


Q ss_pred             eeEEEEecChhhHHHHHHhcc
Q 020840          192 LHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       192 l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+++-+|+|+.+.+.-++++.
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~  284 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAV  284 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHH
Confidence            469999999999887777664

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=89.97  E-value=0.77  Score=49.49  Aligned_cols=87  Identities=18%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEee-c
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-A  240 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~-~  240 (320)
                      .+|+|+|||+|.++..+.+.   .+   ...+++-||+|+.+.+.-++++....... .          .....+.+. .
T Consensus       723 ~rVLDVGCGTG~lai~LAr~---g~---p~a~VtGVDIS~emLe~AReRLa~~lnAk-r----------~gl~nVefiqG  785 (950)
T 3htx_A          723 STLVDFGCGSGSLLDSLLDY---PT---SLQTIIGVDISPKGLARAAKMLHVKLNKE-A----------CNVKSATLYDG  785 (950)
T ss_dssp             SEEEEETCSSSHHHHHHTSS---CC---CCCEEEEEESCHHHHHHHHHHHHHHTTTT-C----------SSCSEEEEEES
T ss_pred             CEEEEECCCCCHHHHHHHHh---CC---CCCeEEEEECCHHHHHHHHHHhhhccchh-h----------cCCCceEEEEC
Confidence            58999999999988766432   11   12379999999999887777664311000 0          000124332 2


Q ss_pred             ccccCCC--CCCEEEEEecccccccce
Q 020840          241 ALEQVPS--GFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       241 sleelp~--~~~~~iiANE~fDALPv~  265 (320)
                      ++.+++.  +..-+|++++++.-+|-.
T Consensus       786 Da~dLp~~d~sFDlVV~~eVLeHL~dp  812 (950)
T 3htx_A          786 SILEFDSRLHDVDIGTCLEVIEHMEED  812 (950)
T ss_dssp             CTTSCCTTSCSCCEEEEESCGGGSCHH
T ss_pred             chHhCCcccCCeeEEEEeCchhhCChH
Confidence            2333332  223578888988888843

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=89.91  E-value=0.9  Score=43.91  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=27.2

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .|+++|||+|.|+.-..++        .+-+++-||.|+ +.+.-++.+.
T Consensus        86 ~VLDvG~GtGiLs~~Aa~a--------GA~~V~ave~s~-~~~~a~~~~~  126 (376)
T 4hc4_A           86 TVLDVGAGTGILSIFCAQA--------GARRVYAVEASA-IWQQAREVVR  126 (376)
T ss_dssp             EEEEETCTTSHHHHHHHHT--------TCSEEEEEECST-THHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHh--------CCCEEEEEeChH-HHHHHHHHHH
Confidence            7999999999886433221        123689999998 4444444443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=89.59  E-value=0.42  Score=44.91  Aligned_cols=41  Identities=17%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .+|+|+|||+|.++..+++.    +    ..+++-||+|+ +.+.-++++
T Consensus        68 ~~VLDvGcG~G~~~~~la~~----g----~~~v~gvD~s~-~l~~a~~~~  108 (349)
T 3q7e_A           68 KVVLDVGSGTGILCMFAAKA----G----ARKVIGIECSS-ISDYAVKIV  108 (349)
T ss_dssp             CEEEEESCTTSHHHHHHHHT----T----CSEEEEEECST-HHHHHHHHH
T ss_pred             CEEEEEeccchHHHHHHHHC----C----CCEEEEECcHH-HHHHHHHHH
Confidence            58999999999998776653    2    23799999997 444434434

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=89.53  E-value=0.96  Score=41.06  Aligned_cols=44  Identities=14%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             ceEEEecCCc---hhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGR---GTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~---GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||.   |.++.-+.+   ..|.    .+++-||.||.+.+.-++++.
T Consensus        79 ~~vLDlGcG~pt~G~~~~~~~~---~~p~----~~v~~vD~sp~~l~~Ar~~~~  125 (274)
T 2qe6_A           79 SQFLDLGSGLPTVQNTHEVAQS---VNPD----ARVVYVDIDPMVLTHGRALLA  125 (274)
T ss_dssp             CEEEEETCCSCCSSCHHHHHHH---HCTT----CEEEEEESSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCChHHHHHHH---hCCC----CEEEEEECChHHHHHHHHhcC
Confidence            4899999999   987543322   2333    479999999999887777664

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=89.16  E-value=0.81  Score=39.41  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchh-HHHHHHHHHhcCcCcccceeEEEEecChhhHH
Q 020840          135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGT-LMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (320)
Q Consensus       135 pEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~Gt-La~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~  205 (320)
                      |+-+.| -|.||.||.+.+   .  .+-++||+|+|+|. .|.-+-+.        ..+.+..+|+||.-..
T Consensus        16 ~~~~~m-~e~LaeYI~~~~---~--~~~rVlEVG~G~g~~vA~~La~~--------~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           16 PRGSHM-WNDLAVYIIRCS---G--PGTRVVEVGAGRFLYVSDYIRKH--------SKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCCCHH-HHHHHHHHHHHS---C--SSSEEEEETCTTCCHHHHHHHHH--------SCCEEEEECSSCSSTT
T ss_pred             cchhhH-HHHHHHHHHhcC---C--CCCcEEEEccCCChHHHHHHHHh--------CCCeEEEEECCccccc
Confidence            455667 778999986543   2  23589999999995 66544321        1235788888876443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=88.99  E-value=0.92  Score=47.82  Aligned_cols=63  Identities=22%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCc------CcccceeEEEEecChhh
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK------NFTESLHIHLVECSPTL  203 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p------~~~~~l~y~iVE~Sp~L  203 (320)
                      ..|-++|...+.+....  ......|+++|||||-|..-.+++.+...      ....+.+++.||.||..
T Consensus       390 ~~Y~~AI~~al~d~~~~--~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A  458 (745)
T 3ua3_A          390 DVYGEAVVGALKDLGAD--GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNA  458 (745)
T ss_dssp             HHHHHHHHHHHHHHHTT--CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHH
T ss_pred             HHHHHHHHHHHHHhhcc--cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHH
Confidence            34455555544332211  11346899999999999877777764211      12245689999999843

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=88.91  E-value=0.48  Score=42.49  Aligned_cols=45  Identities=13%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ...+|+|+|||+|.++.  +.  ...+    ..+++-||+|+.+.+.-++++.
T Consensus        71 ~~~~vLDiGcG~G~~~~--l~--~~~~----~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQL--LS--ACSH----FEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CCSEEEEETCTTCCGGG--TT--GGGG----CSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHHH--Hh--hccC----CCeEEEeCCCHHHHHHHHHHHh
Confidence            34689999999999432  11  1111    1379999999999887666554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=88.91  E-value=2.3  Score=41.01  Aligned_cols=67  Identities=13%  Similarity=0.086  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhc-CcCc------------------------------ccc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF------------------------------TES  191 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~------------------------------~~~  191 (320)
                      |.||..++.   ..+....-.|++.+||+||++........+ .|.+                              -..
T Consensus       180 e~LAaall~---l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          180 ENMAAAIIL---LSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             HHHHHHHHH---HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHH---HhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            445555443   234434468999999999998766544332 1211                              012


Q ss_pred             eeEEEEecChhhHHHHHHhcc
Q 020840          192 LHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       192 l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+++-+|+|+.+.+.-++++.
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~  277 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAR  277 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHH
Confidence            469999999999887777664

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=88.89  E-value=0.34  Score=41.59  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ..+|+|+|||+|.++..++.          .   +.||+|+.+.+.-+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~----------~---~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKI----------K---IGVEPSERMAEIARKR   84 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTC----------C---EEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHH----------H---hccCCCHHHHHHHHhc
Confidence            45899999999998876532          1   8899999987765553

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=88.33  E-value=1  Score=42.12  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -.|+|+|||+|.++..+++.+   |    ..+++-||+|+.+.+.-++++..
T Consensus        28 ~~vLD~g~G~G~~s~~la~~~---~----~~~VigvD~d~~al~~A~~~~~~   72 (301)
T 1m6y_A           28 KIILDCTVGEGGHSRAILEHC---P----GCRIIGIDVDSEVLRIAEEKLKE   72 (301)
T ss_dssp             CEEEETTCTTSHHHHHHHHHC---T----TCEEEEEESCHHHHHHHHHHTGG
T ss_pred             CEEEEEeCCcCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHHh
Confidence            589999999999999988764   2    23689999999998887777754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=88.30  E-value=0.62  Score=46.20  Aligned_cols=42  Identities=19%  Similarity=0.159  Sum_probs=29.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+|+|+|||+|.++.-+.+    .+    ..+++.||+|+ +.+.-++++
T Consensus       159 ~~~VLDiGcGtG~la~~la~----~~----~~~V~gvD~s~-~l~~A~~~~  200 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQ----AG----ARKIYAVEAST-MAQHAEVLV  200 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHH----TT----CSEEEEEECHH-HHHHHHHHH
T ss_pred             CCEEEEecCcccHHHHHHHH----cC----CCEEEEEEcHH-HHHHHHHHH
Confidence            35899999999998875543    22    23799999999 544444444

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=88.05  E-value=0.49  Score=42.84  Aligned_cols=45  Identities=22%  Similarity=0.243  Sum_probs=35.2

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|+++..+.+..   +    ..+++.||+||.+.+.-++++.
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~---~----~~~V~~vD~s~~av~~a~~n~~  164 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYS---K----PKLVYAIEKNPTAYHYLCENIK  164 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHT---C----CSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEEecCcCCHHHHHHHHhC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            3589999999999998876643   1    2369999999998877666554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=87.89  E-value=1.4  Score=41.33  Aligned_cols=42  Identities=12%  Similarity=0.033  Sum_probs=33.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+|+|+|||+|.++..+++.        .. +++.||+|+.+.+.-++++.
T Consensus       155 ~~VLDlgcGtG~~sl~la~~--------ga-~V~~VD~s~~al~~a~~n~~  196 (332)
T 2igt_A          155 LKVLNLFGYTGVASLVAAAA--------GA-EVTHVDASKKAIGWAKENQV  196 (332)
T ss_dssp             CEEEEETCTTCHHHHHHHHT--------TC-EEEEECSCHHHHHHHHHHHH
T ss_pred             CcEEEcccccCHHHHHHHHc--------CC-EEEEEECCHHHHHHHHHHHH
Confidence            48999999999999877652        12 69999999998877666553

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=87.66  E-value=0.45  Score=43.15  Aligned_cols=43  Identities=19%  Similarity=0.205  Sum_probs=33.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|.++..+.+..       .. +++-||+||.+.+.-++++.
T Consensus       127 ~~VLDlgcG~G~~~~~la~~~-------~~-~V~~vD~s~~~~~~a~~n~~  169 (278)
T 2frn_A          127 ELVVDMFAGIGHLSLPIAVYG-------KA-KVIAIEKDPYTFKFLVENIH  169 (278)
T ss_dssp             CEEEETTCTTTTTHHHHHHHT-------CC-EEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEecccCCHHHHHHHHhC-------CC-EEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876642       11 68999999998876666554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=87.65  E-value=1.1  Score=43.39  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       142 Ge~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+.+..++.+..   +....-+|+|+|||+|+++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus       271 ~e~l~~~~~~~l---~~~~~~~VLDlgcG~G~~~~~la~~---------~~~V~gvD~s~~al~~A~~n~~  329 (433)
T 1uwv_A          271 NQKMVARALEWL---DVQPEDRVLDLFCGMGNFTLPLATQ---------AASVVGVEGVPALVEKGQQNAR  329 (433)
T ss_dssp             HHHHHHHHHHHH---TCCTTCEEEEESCTTTTTHHHHHTT---------SSEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh---cCCCCCEEEECCCCCCHHHHHHHhh---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            444445554333   2223358999999999999876542         2369999999998776666553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=87.59  E-value=0.71  Score=42.36  Aligned_cols=58  Identities=14%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..|...++...   ..+. -.|++++||+||++...++.         .-+++.||++|...+.-++++..
T Consensus       222 ~~l~~~~i~~~---~~~~-~~vlD~f~GsGt~~~~a~~~---------g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          222 LELAERLVRMF---SFVG-DVVLDPFAGTGTTLIAAARW---------GRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHHHH---CCTT-CEEEETTCTTTHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCC-CEEEECCCCCCHHHHHHHHc---------CCeEEEEeCCHHHHHHHHHHHHH
Confidence            34445554443   2333 38999999999998876542         12699999999999888887754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=87.55  E-value=0.54  Score=39.89  Aligned_cols=31  Identities=13%  Similarity=0.279  Sum_probs=25.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~  202 (320)
                      ...+|+|+|||+|.++..+            ..+++.||+|+.
T Consensus        67 ~~~~vLDiG~G~G~~~~~l------------~~~v~~~D~s~~   97 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSI------------RNPVHCFDLASL   97 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHC------------CSCEEEEESSCS
T ss_pred             CCCeEEEECCcCCHHHHHh------------hccEEEEeCCCC
Confidence            3458999999999987755            136899999987

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=87.12  E-value=0.78  Score=39.30  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=30.3

Q ss_pred             HHHHHHcCC-CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840          150 MCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (320)
Q Consensus       150 ~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~  202 (320)
                      .++.++.+. ....+|+|+|||+|.++..+.+.         ..+++-||+||.
T Consensus        14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---------~~~V~gvD~~~~   58 (191)
T 3dou_A           14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---------ARKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---------CSEEEEEESSCC
T ss_pred             HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---------CCcEEEEecccc
Confidence            344444432 23468999999999988876542         246889999985

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=86.29  E-value=4.7  Score=37.68  Aligned_cols=71  Identities=13%  Similarity=0.154  Sum_probs=41.5

Q ss_pred             CCChhHHHHHHHHHHHH----HHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          134 SPEVSQMFGEMVGVWAM----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       134 SpEIsp~FGe~IA~~i~----~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      .|+....|....+....    .+......+..-+||++|||+|.++..|++.   +|+    ++.++.|. |...+.-++
T Consensus       149 ~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~---~p~----~~~~~~dl-p~v~~~a~~  220 (353)
T 4a6d_A          149 SEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSL---YPG----CKITVFDI-PEVVWTAKQ  220 (353)
T ss_dssp             SHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHH---CSS----CEEEEEEC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHh---CCC----ceeEeccC-HHHHHHHHH
Confidence            34445556554432211    1222223333348999999999999888764   454    46777776 555555555


Q ss_pred             hcc
Q 020840          210 NLK  212 (320)
Q Consensus       210 ~L~  212 (320)
                      .+.
T Consensus       221 ~~~  223 (353)
T 4a6d_A          221 HFS  223 (353)
T ss_dssp             HSC
T ss_pred             hhh
Confidence            553

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=86.22  E-value=1.1  Score=40.72  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHH---hc-CcCc-ccceeEEEEecCh
Q 020840          160 NRVNLVELGPGRGTLMADLLRGA---SK-FKNF-TESLHIHLVECSP  201 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l---~~-~p~~-~~~l~y~iVE~Sp  201 (320)
                      ..++|+|+|.|+|..+.-+++.+   ++ .|+- ...++|+-||..|
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            45799999999999999988876   22 4532 1247899999987

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=85.03  E-value=0.64  Score=43.70  Aligned_cols=48  Identities=17%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +.+-+|+++|||.|-|+.-++.       .....+|+.+|+++.+.+.-++++..
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~-------~~p~a~y~a~DId~~~le~a~~~l~~  178 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMG-------LPAETVYIASDIDARLVGFVDEALTR  178 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTT-------CCTTCEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCceeeeeccCccHHHHHHHh-------hCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            3456999999999999876543       12345899999999999988887753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=84.98  E-value=1.5  Score=42.82  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|+++.-+.+.         ..+++-||+|+.+.+.-++++.
T Consensus       292 ~~VLDlgcG~G~~sl~la~~---------~~~V~gvD~s~~ai~~A~~n~~  333 (425)
T 2jjq_A          292 EKILDMYSGVGTFGIYLAKR---------GFNVKGFDSNEFAIEMARRNVE  333 (425)
T ss_dssp             SEEEEETCTTTHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeeccchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999999876542         1269999999999876666553

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=84.71  E-value=1.4  Score=41.09  Aligned_cols=46  Identities=9%  Similarity=0.162  Sum_probs=32.4

Q ss_pred             HHHcCCC-CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          153 WEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       153 w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      .+.++.. ....++|+|||+|.++..+++.    +    .-+++-||+|+.+-+.
T Consensus        77 l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~----g----a~~V~aVDvs~~mL~~  123 (291)
T 3hp7_A           77 LAVFNLSVEDMITIDIGASTGGFTDVMLQN----G----AKLVYAVDVGTNQLVW  123 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSHHHHHHHHT----T----CSEEEEECSSSSCSCH
T ss_pred             HHhcCCCccccEEEecCCCccHHHHHHHhC----C----CCEEEEEECCHHHHHH
Confidence            3444432 3458999999999999776652    1    2368999999987543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=84.48  E-value=5  Score=41.66  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhc-CcCccc-------------------------------
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNFTE-------------------------------  190 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~~~-------------------------------  190 (320)
                      |.||..++..   .+......|++.+||+||++......... .|.+..                               
T Consensus       176 e~LAa~ll~~---~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          176 ETLAAAIVMR---SGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             HHHHHHHHHH---TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---hCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            4555555432   34434458999999999998766554322 232211                               


Q ss_pred             ---ceeEEEEecChhhHHHHHHhcc
Q 020840          191 ---SLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       191 ---~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                         ..+++-+|++|.+.+.-++++.
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~  277 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNAR  277 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHH
Confidence               1579999999999887777664

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=84.15  E-value=2.1  Score=39.62  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=35.7

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||.|..+..+.+.+.      ...+++-||+|+...+.-++++.
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~------~~~~v~avD~s~~~l~~a~~~~~  164 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMR------NDGVIYAFDVDENRLRETRLNLS  164 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTT------TCSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHHH
Confidence            35899999999999998877542      12469999999998776666554

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=82.70  E-value=2  Score=40.63  Aligned_cols=42  Identities=21%  Similarity=0.187  Sum_probs=31.7

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|+|+|||+|+++.-+.+   .      .-+++-||+|+.+.+.-++++.
T Consensus       215 ~~vLDl~cG~G~~~l~la~---~------~~~V~gvd~~~~ai~~a~~n~~  256 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALAR---N------FDRVLATEIAKPSVAAAQYNIA  256 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGG---G------SSEEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEccCCCCHHHHHHHh---c------CCEEEEEECCHHHHHHHHHHHH
Confidence            3799999999999975432   1      1268999999998876666553

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=81.25  E-value=3.5  Score=38.65  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=50.0

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|+.-++--=--.|=|+|+.--+.     -.|.+-+|+=||.|.|..++.+|++.    .   -.++.+||+.|...+.-
T Consensus        56 Dg~~q~te~De~~YhE~l~h~~l~-----~~p~pk~VLIiGgGdG~~~revlk~~----~---v~~v~~VEID~~Vv~~a  123 (294)
T 3o4f_A           56 DGVVQTTERDEFIYHEMMTHVPLL-----AHGHAKHVLIIGGGDGAMLREVTRHK----N---VESITMVEIDAGVVSFC  123 (294)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHHH-----HSSCCCEEEEESCTTSHHHHHHHTCT----T---CCEEEEEESCHHHHHHH
T ss_pred             CCchhhccccHHHHHHHHHHHHHh-----hCCCCCeEEEECCCchHHHHHHHHcC----C---cceEEEEcCCHHHHHHH
Confidence            355444322124677887764432     23455689999999999988887642    1   13699999999999988


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++.|.
T Consensus       124 ~~~lp  128 (294)
T 3o4f_A          124 RQYLP  128 (294)
T ss_dssp             HHHCH
T ss_pred             HhcCc
Confidence            88774

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=81.17  E-value=2  Score=40.73  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .-+|+|+|||+|+++..+...         ..+++.||+|+...+.-++++.
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~---------~~~v~~vD~s~~~~~~a~~n~~  252 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG---------FREVVAVDSSAEALRRAEENAR  252 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH---------EEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEeeeccCHHHHHHHHh---------CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999999887764         1368999999998876666554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=80.58  E-value=3.4  Score=39.82  Aligned_cols=67  Identities=16%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|.|+.-.+.+++...++           +....-+|+|+|||.|..+..++...   +    ..+++.+|+|+...+.-
T Consensus       225 ~G~~~~qd~~s~~~~~~l-----------~~~~g~~VLDlgaG~G~~t~~la~~~---~----~~~v~a~D~~~~~l~~~  286 (429)
T 1sqg_A          225 DGWVTVQDASAQGCMTWL-----------APQNGEHILDLCAAPGGKTTHILEVA---P----EAQVVAVDIDEQRLSRV  286 (429)
T ss_dssp             GTSEEECCHHHHTHHHHH-----------CCCTTCEEEEESCTTCHHHHHHHHHC---T----TCEEEEEESSTTTHHHH
T ss_pred             CCCeEeeCHHHHHHHHHc-----------CCCCcCeEEEECCCchHHHHHHHHHc---C----CCEEEEECCCHHHHHHH
Confidence            466665555555544332           22223489999999999999887753   2    14799999999987766


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++++.
T Consensus       287 ~~~~~  291 (429)
T 1sqg_A          287 YDNLK  291 (429)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d1zkda1	365	c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {	1e-43

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 365

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  151 bits (382), Expect = 1e-43
 Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 21/213 (9%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 3   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 61

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 62  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 122 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 161

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCC 295
           P+HQ  K   GW E++++I     L   ++   
Sbjct: 162 PIHQAIKRETGWHERVIEIGASGELVFGVAADP 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	100.0
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.35
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.31
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.25
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.24
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.22
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.15
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.03
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	96.95
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.86
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.85
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.62
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.54
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.53
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	96.5
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.41
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.35
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.3
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.3
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.28
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.12
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.12
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.03
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	95.93
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.92
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.84
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.8
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	95.8
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.79
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.67
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.61
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.6
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.55
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.5
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	95.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.28
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	95.24
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.11
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	95.01
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.98
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	94.91
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.73
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	94.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	94.65
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.61
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	94.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	94.53
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	94.47
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	94.32
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.04
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.02
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	93.93
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	93.91
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.51
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	93.08
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	92.96
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	92.69
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	92.41
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	92.09
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	91.8
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	91.32
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	91.31
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	91.29
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	91.22
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	91.1
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	90.74
d2h00a1	250	Methyltransferase 10 domain containing protein MET	89.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	88.62
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	87.71
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	87.51
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	87.03
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	85.97
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	84.77
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	84.7
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	84.31
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	83.49
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	81.64
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	81.39
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	80.49

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=5e-57  Score=434.82  Aligned_cols=198  Identities=40%  Similarity=0.789  Sum_probs=176.2

Q ss_pred             hHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcc
Q 020840           83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV  162 (320)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpIsf~dfM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l  162 (320)
                      .+.|.+.|+++|++. |||||++||++|||||++|||+++.+||++||||||||+||+||++||+|+.+.|+.++.|.++
T Consensus         3 ~~~L~~~i~~~i~~~-G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~   81 (365)
T d1zkda1           3 QTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTL   81 (365)
T ss_dssp             SSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSE
T ss_pred             ccHHHHHHHHHHHhc-CCccHHHHHHHHcCCCCccccCCCCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            368999999999987 9999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeeccc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAAL  242 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~sl  242 (320)
                      +|||+|||+|+||+|||++++..|.++..++|++||+||.|++.|+++|...                   .++.|+.++
T Consensus        82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-------------------~~i~w~~~~  142 (365)
T d1zkda1          82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-------------------RNIHWHDSF  142 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-------------------SSEEEESSG
T ss_pred             eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-------------------ccceeccCh
Confidence            9999999999999999999998899999999999999999999999998741                   368999999


Q ss_pred             ccCCCCCCEEEEEecccccccceeEEEeCCeeEEEEEEEcCCCceEEEeecCCCccchh
Q 020840          243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSLHQQLSFCCSAASGL  301 (320)
Q Consensus       243 eelp~~~~~~iiANE~fDALPv~~f~~~~~~w~E~~V~v~~~g~f~~v~~p~~~~~~~~  301 (320)
                      +++|.. |+||||||||||||||+|++++++|+|++|.+++++.|.+...+...+....
T Consensus       143 ~~~~~~-~g~iiaNE~fDAlPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~  200 (365)
T d1zkda1         143 EDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEA  200 (365)
T ss_dssp             GGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGG
T ss_pred             hhcccC-CeEEEecccCccccceEEEEcCccceeeeeeecccceeEEeeccccchhHHh
Confidence            999876 8999999999999999999999999999999988888988887766665443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.35  E-value=0.00021  Score=62.99  Aligned_cols=45  Identities=22%  Similarity=0.391  Sum_probs=37.0

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +.-.|+|||||.|.|...|++..         -+++.||+.+.|.+.-++++..
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~---------~~v~avE~D~~l~~~l~~~~~~   65 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRC---------NFVTAIEIDHKLCKTTENKLVD   65 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS---------SEEEEECSCHHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCchHHHHHHHhCc---------CceEEEeeccchHHHHHHHhhc
Confidence            44589999999999999998752         1589999999999887776643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=0.00091  Score=56.65  Aligned_cols=94  Identities=16%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhh
Q 020840          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTI  228 (320)
Q Consensus       149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~  228 (320)
                      +....++...|. -+|+|+|||+|.++..+++.+. .|    ..+++-||+|+.+.+.-++++.....            
T Consensus        29 i~~~~~~~~~~~-~~vLDlGCGtG~~~~~l~~~~~-~~----~~~v~giD~S~~ml~~A~~~~~~~~~------------   90 (225)
T d1im8a_          29 IGMLAERFVTAD-SNVYDLGCSRGAATLSARRNIN-QP----NVKIIGIDNSQPMVERCRQHIAAYHS------------   90 (225)
T ss_dssp             HHHHHHHHCCTT-CEEEEESCTTCHHHHHHHHTCC-CS----SCEEEEECSCHHHHHHHHHHHHTSCC------------
T ss_pred             HHHHHHHhcCCC-CEEEEeccchhhHHHHHHHhhc-CC----CCceEEeCCCHHHHHHHHHHhHhhcc------------
Confidence            333334444443 5899999999999988877542 12    35899999999999988887754211            


Q ss_pred             cccCCCCeEeec-ccccCCCCCCEEEEEecccccccc
Q 020840          229 SSLAGTPVSWHA-ALEQVPSGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       229 ~~~~~~~i~W~~-sleelp~~~~~~iiANE~fDALPv  264 (320)
                          ...+.+.. +..+.+....-+++++.++=-++.
T Consensus        91 ----~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~~~~  123 (225)
T d1im8a_          91 ----EIPVEILCNDIRHVEIKNASMVILNFTLQFLPP  123 (225)
T ss_dssp             ----SSCEEEECSCTTTCCCCSEEEEEEESCGGGSCG
T ss_pred             ----cchhhhccchhhccccccceeeEEeeeccccCh
Confidence                11233321 222334333467888887766654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=0.0005  Score=58.46  Aligned_cols=56  Identities=9%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++..+++....+..-+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---------~~~v~gvD~s~~mi~~a~~~~~   84 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---------GYEVVGLDLHEEMLRVARRKAK   84 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc---------ceEEEEEeeccccccccccccc
Confidence            4445566666655568999999999998876542         1268999999999886666543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.24  E-value=0.00078  Score=57.46  Aligned_cols=70  Identities=19%  Similarity=0.143  Sum_probs=47.0

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      -++|.|++++        |..++......|.-+..+|+|+|||+|.++...+..        ...+++.||+++...+.-
T Consensus        22 l~qy~Tp~~~--------a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~--------g~~~v~~vdi~~~~~~~a   85 (201)
T d1wy7a1          22 LEQYRTPGNA--------ASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL--------GAKEVICVEVDKEAVDVL   85 (201)
T ss_dssp             GTCCCCCHHH--------HHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT--------TCSEEEEEESCHHHHHHH
T ss_pred             cccCCCCHHH--------HHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc--------CCCEEEEEcCcHHHHHHH
Confidence            3689999776        333333333344333458999999999998654421        123689999999988877


Q ss_pred             HHhccc
Q 020840          208 HHNLKC  213 (320)
Q Consensus       208 ~e~L~~  213 (320)
                      ++++..
T Consensus        86 ~~N~~~   91 (201)
T d1wy7a1          86 IENLGE   91 (201)
T ss_dssp             HHHTGG
T ss_pred             HHHHHH
Confidence            776653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.22  E-value=0.0021  Score=56.23  Aligned_cols=84  Identities=14%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCC
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTP  235 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~  235 (320)
                      .+.+..-+|+|+|||+|.++..+.+..        ..+++-||+||.+.+.-+++.....                ...+
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvD~s~~~i~~a~~~~~~~g----------------l~~~  118 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKF--------GVSIDCLNIAPVQNKRNEEYNNQAG----------------LADN  118 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHHHHT----------------CTTT
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccC--------CcEEEEEeccchhhhhhhccccccc----------------cccc
Confidence            455556799999999999988776532        1368999999998765555443210                0112


Q ss_pred             eEee-cccccCC--CCCCEEEEEeccccccc
Q 020840          236 VSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       236 i~W~-~sleelp--~~~~~~iiANE~fDALP  263 (320)
                      +... .+..++|  .+..=+|++++.|--+|
T Consensus       119 v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~  149 (282)
T d2o57a1         119 ITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP  149 (282)
T ss_dssp             EEEEECCTTSCSSCTTCEEEEEEESCGGGCS
T ss_pred             ccccccccccccccccccchhhccchhhhcc
Confidence            3222 2334443  22234788988887776

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0012  Score=57.56  Aligned_cols=52  Identities=13%  Similarity=0.263  Sum_probs=41.6

Q ss_pred             CcceEEEecCCchhHHHHHHHHHh-cCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..++|+|+|||+|.++..||+.+. .++..  .++|+-||+|+.+.+.-++++..
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~--~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGV--CINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTC--EEEEEEECCCHHHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCC--ceEEEEEeCcHHHHHHHHHHHhh
Confidence            457899999999999999999885 35542  35789999999998777666643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.03  E-value=0.0012  Score=55.37  Aligned_cols=86  Identities=12%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             HHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhccc
Q 020840          152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSL  231 (320)
Q Consensus       152 ~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~  231 (320)
                      +.+..+....-+|+|+|||+|.++..+++.   .      -+++-||+|+.+.+.-++++.....               
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~------~~v~gvD~s~~~i~~A~~~~~~~~~---------------   62 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---V------KKVVAFDLTEDILKVARAFIEGNGH---------------   62 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---S------SEEEEEESCHHHHHHHHHHHHHTTC---------------
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHh---C------CEEEEEECCHHHHhhhhhccccccc---------------
Confidence            444455544469999999999998776432   1      1589999999998776665543110               


Q ss_pred             CCCCeEe-ecccccCC--CCCCEEEEEeccccccc
Q 020840          232 AGTPVSW-HAALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       232 ~~~~i~W-~~sleelp--~~~~~~iiANE~fDALP  263 (320)
                        .++.+ ..+.+++|  .+..=+|++++++--+|
T Consensus        63 --~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~   95 (231)
T d1vl5a_          63 --QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP   95 (231)
T ss_dssp             --CSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS
T ss_pred             --ccccccccccccccccccccccccccccccccC
Confidence              12322 22334443  33335788888887664

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.95  E-value=0.0015  Score=56.05  Aligned_cols=69  Identities=10%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      -..|.|+++|.       |.++.......+. +.-+|+|+|||+|.|+...+.   .     ..-+++.||+++...+.-
T Consensus        24 leQy~T~~~~a-------~~~~~~~~~~~dl-~Gk~VLDlGcGtG~l~i~a~~---~-----ga~~V~~vDid~~a~~~a   87 (197)
T d1ne2a_          24 LEQYPTDASTA-------AYFLIEIYNDGNI-GGRSVIDAGTGNGILACGSYL---L-----GAESVTAFDIDPDAIETA   87 (197)
T ss_dssp             ---CCCCHHHH-------HHHHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHH---T-----TBSEEEEEESCHHHHHHH
T ss_pred             cccCCCCHHHH-------HHHHHHHHHcCCC-CCCEEEEeCCCCcHHHHHHHH---c-----CCCcccccccCHHHHHHH
Confidence            35788998884       2333333333233 234899999999998744322   1     122689999999998877


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++++.
T Consensus        88 r~N~~   92 (197)
T d1ne2a_          88 KRNCG   92 (197)
T ss_dssp             HHHCT
T ss_pred             HHccc
Confidence            76653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.86  E-value=0.0023  Score=52.82  Aligned_cols=77  Identities=12%  Similarity=0.099  Sum_probs=49.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEee
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~  239 (320)
                      +.-+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-++++....                  ..+.+.
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~---------~~~v~giD~S~~~i~~ak~~~~~~~------------------~~~~~~   89 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY---------GFEVVGVDISEDMIRKAREYAKSRE------------------SNVEFI   89 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHHHTT------------------CCCEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhh---------hcccccccccccchhhhhhhhcccc------------------cccccc
Confidence            3458999999999988765431         1268999999999887777664311                  122222


Q ss_pred             -cccccCC--CCCCEEEEEeccccccc
Q 020840          240 -AALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       240 -~sleelp--~~~~~~iiANE~fDALP  263 (320)
                       .+..+++  .+..-+|+++.+|-.+|
T Consensus        90 ~~d~~~l~~~~~~fD~I~~~~~l~~~~  116 (226)
T d1ve3a1          90 VGDARKLSFEDKTFDYVIFIDSIVHFE  116 (226)
T ss_dssp             ECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             ccccccccccCcCceEEEEecchhhCC
Confidence             2233343  22234788888887775

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.85  E-value=0.0012  Score=53.08  Aligned_cols=56  Identities=13%  Similarity=0.017  Sum_probs=44.1

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       149 i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +.+.|..++.++.-+|+|+|||+|.+|..+.+.         -.+++-||+|+.+.+.-+++...
T Consensus         9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~---------G~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_           9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ---------GYHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH---------CCEEEEEEECHHHHHHHHHHHCS
T ss_pred             HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc---------CCceEeecccHHHHHHHHHHhcc
Confidence            444566777777779999999999988877652         13689999999999988877654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0035  Score=56.44  Aligned_cols=48  Identities=25%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +....-.|+|+|||.|.|...+|+..+         +++.||+.+.|.+.-++++..
T Consensus        18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~---------~v~aiE~D~~l~~~L~~~~~~   65 (278)
T d1zq9a1          18 ALRPTDVVLEVGPGTGNMTVKLLEKAK---------KVVACELDPRLVAELHKRVQG   65 (278)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSS---------EEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHhcCC---------cEEEEEEccchhHHHHHHHhh
Confidence            443445899999999999999987521         589999999999988877754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.54  E-value=0.00025  Score=62.98  Aligned_cols=66  Identities=21%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChh
Q 020840          123 DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (320)
Q Consensus       123 ~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~  202 (320)
                      .+||  -.|...+.+-.        .|+   +..+....-.|+|||||+|.|..-++...         -+++.||+++.
T Consensus         5 ~k~G--QnFL~d~~ii~--------kIv---~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---------~~v~aIE~D~~   62 (245)
T d1yuba_           5 IKYS--QNFLTSEKVLN--------QII---KQLNLKETDTVYEIGTGKGHLTTKLAKIS---------KQVTSIELDSH   62 (245)
T ss_dssp             CCSC--CCBCCCTTTHH--------HHH---HHCCCCSSEEEEECSCCCSSCSHHHHHHS---------SEEEESSSSCS
T ss_pred             CCCC--CcccCCHHHHH--------HHH---HhcCCCCCCeEEEECCCccHHHHHHHhhc---------CceeEeeeccc
Confidence            3455  36777766532        222   22343344589999999999999887652         15899999998


Q ss_pred             hHHHHHHh
Q 020840          203 LQKLQHHN  210 (320)
Q Consensus       203 Lr~~Q~e~  210 (320)
                      |.+.-+++
T Consensus        63 l~~~l~~~   70 (245)
T d1yuba_          63 LFNLSSEK   70 (245)
T ss_dssp             SSSSSSCT
T ss_pred             chhhhhhh
Confidence            86543333

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.53  E-value=0.0051  Score=55.07  Aligned_cols=76  Identities=11%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      ..|-|+|+..|..+..+++..++       ......+|+|.|||+|.++..+++.+.....  ...+++-+|+++.+.+.
T Consensus        91 ~~g~~~TP~~i~~~m~~l~~~~~-------~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~--~~~~~~g~di~~~~~~~  161 (328)
T d2f8la1          91 QVNHQMTPDSIGFIVAYLLEKVI-------QKKKNVSILDPACGTANLLTTVINQLELKGD--VDVHASGVDVDDLLISL  161 (328)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHH-------TTCSEEEEEETTCTTSHHHHHHHHHHHTTSS--CEEEEEEEESCHHHHHH
T ss_pred             cCCeEECcHHHHHHHHHHHHHHh-------CCCCCCEEEeCCCCcchhHHHHHHHHHhccC--ccceEEEecccHHHHHH
Confidence            35778999888766555443332       2234579999999999999999999864321  23468889999988776


Q ss_pred             HHHhc
Q 020840          207 QHHNL  211 (320)
Q Consensus       207 Q~e~L  211 (320)
                      -+..+
T Consensus       162 a~~~~  166 (328)
T d2f8la1         162 ALVGA  166 (328)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=96.50  E-value=0.0023  Score=56.52  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=51.6

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEe
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W  238 (320)
                      .++.+|+|+|||+|.++..+...+   |   ...+|+-||+|+.+.+.-++++...                  +..+.+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~---~---~~~~v~giD~s~~~l~~a~~~~~~~------------------~~~~~f   81 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLL---P---EGSKYTGIDSGETLLAEARELFRLL------------------PYDSEF   81 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTS---C---TTCEEEEEECCHHHHHHHHHHHHSS------------------SSEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhC---C---CCCEEEEEecchhHhhhhhcccccc------------------cccccc
Confidence            456799999999999988765432   2   2246899999999987766655431                  112333


Q ss_pred             e-cccccCCC-CCCEEEEEeccccccc
Q 020840          239 H-AALEQVPS-GFPTIIVAHEFYDALP  263 (320)
Q Consensus       239 ~-~sleelp~-~~~~~iiANE~fDALP  263 (320)
                      . .++.+++. +..=+|+++.+|--+|
T Consensus        82 ~~~d~~~~~~~~~fD~v~~~~~l~~~~  108 (281)
T d2gh1a1          82 LEGDATEIELNDKYDIAICHAFLLHMT  108 (281)
T ss_dssp             EESCTTTCCCSSCEEEEEEESCGGGCS
T ss_pred             cccccccccccCCceEEEEehhhhcCC
Confidence            2 12333331 2134788888887775

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.41  E-value=0.0039  Score=51.79  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +.....-+|+|+|||+|.++..+.+   ..+      +++.||+|+...+.-++++.
T Consensus        48 l~~~~~~~VLDiGcG~G~~~~~la~---~~~------~v~~iD~s~~~i~~a~~n~~   95 (194)
T d1dusa_          48 VVVDKDDDILDLGCGYGVIGIALAD---EVK------STTMADINRRAIKLAKENIK   95 (194)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHGG---GSS------EEEEEESCHHHHHHHHHHHH
T ss_pred             CCcCCCCeEEEEeecCChhHHHHHh---hcc------ccceeeeccccchhHHHHHH
Confidence            3333445899999999999865543   222      57899999998887776654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.35  E-value=0.0051  Score=52.00  Aligned_cols=76  Identities=12%  Similarity=0.128  Sum_probs=48.1

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeec-
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA-  240 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~-  240 (320)
                      -+|+|+|||+|.++..+.+.   .      -+++-||+|+.+.+.-++++....-                 .++.|.. 
T Consensus        18 ~rILDiGcGtG~~~~~la~~---~------~~v~gvD~S~~~l~~A~~~~~~~~~-----------------~~~~~~~~   71 (234)
T d1xxla_          18 HRVLDIGAGAGHTALAFSPY---V------QECIGVDATKEMVEVASSFAQEKGV-----------------ENVRFQQG   71 (234)
T ss_dssp             CEEEEESCTTSHHHHHHGGG---S------SEEEEEESCHHHHHHHHHHHHHHTC-----------------CSEEEEEC
T ss_pred             CEEEEeCCcCcHHHHHHHHh---C------CeEEEEeCChhhhhhhhhhhccccc-----------------cccccccc
Confidence            48999999999998876542   1      1589999999987766665543100                 1244432 


Q ss_pred             ccccCC--CCCCEEEEEeccccccc
Q 020840          241 ALEQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       241 sleelp--~~~~~~iiANE~fDALP  263 (320)
                      +.+++|  .+..=+|++++.|--+|
T Consensus        72 d~~~~~~~~~~fD~v~~~~~l~~~~   96 (234)
T d1xxla_          72 TAESLPFPDDSFDIITCRYAAHHFS   96 (234)
T ss_dssp             BTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred             ccccccccccccceeeeeceeeccc
Confidence            234443  33235778887776664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0041  Score=52.37  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEe-
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW-  238 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W-  238 (320)
                      ..-+|+|+|||+|.++..++..   .+     -+++.||+|+.+.+.-++++.....                 ..+.+ 
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~---~~-----~~v~~vD~s~~~l~~ak~~~~~~~~-----------------~~~~f~  114 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLP---LF-----REVDMVDITEDFLVQAKTYLGEEGK-----------------RVRNYF  114 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTT---TC-----SEEEEEESCHHHHHHHHHHTGGGGG-----------------GEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHh---cC-----CEEEEeecCHHHhhccccccccccc-----------------cccccc
Confidence            4468999999999988877432   11     2689999999998887777653211                 01222 


Q ss_pred             ecccccCC--CCCCEEEEEecccccccc
Q 020840          239 HAALEQVP--SGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       239 ~~sleelp--~~~~~~iiANE~fDALPv  264 (320)
                      ..++.+++  .+..-+|+++.++..+|-
T Consensus       115 ~~d~~~~~~~~~~fD~I~~~~~l~h~~~  142 (222)
T d2ex4a1         115 CCGLQDFTPEPDSYDVIWIQWVIGHLTD  142 (222)
T ss_dssp             ECCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred             cccccccccccccccccccccccccchh
Confidence            12233333  222367888899988874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.30  E-value=0.012  Score=48.53  Aligned_cols=78  Identities=13%  Similarity=0.049  Sum_probs=48.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEe-ec
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW-HA  240 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W-~~  240 (320)
                      -+|+|+|||+|.++.-+.+.         ..+++-||+|+.+.+.-+++.....-                 ..+.+ ..
T Consensus        32 grvLDiGcG~G~~~~~la~~---------g~~v~gvD~s~~~l~~a~~~~~~~~~-----------------~~~~~~~~   85 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAAN---------GYDVTAWDKNPASMANLERIKAAEGL-----------------DNLQTDLV   85 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHHHTTC-----------------TTEEEEEC
T ss_pred             CcEEEECCCCCHHHHHHHHH---------hhhhccccCcHHHHHHHHHHhhhccc-----------------cchhhhhe
Confidence            48999999999999876542         13689999999987765554432100                 01221 12


Q ss_pred             ccccC-CCCCCEEEEEecccccccce
Q 020840          241 ALEQV-PSGFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       241 sleel-p~~~~~~iiANE~fDALPv~  265 (320)
                      ++.+. +.+..-+|+++.+|-.+|-.
T Consensus        86 d~~~~~~~~~fD~I~~~~~~~~~~~~  111 (198)
T d2i6ga1          86 DLNTLTFDGEYDFILSTVVMMFLEAQ  111 (198)
T ss_dssp             CTTTCCCCCCEEEEEEESCGGGSCTT
T ss_pred             ecccccccccccEEEEeeeeecCCHH
Confidence            22222 22224688899999988754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.28  E-value=0.0062  Score=53.07  Aligned_cols=86  Identities=16%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             HHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccC
Q 020840          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA  232 (320)
Q Consensus       153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~  232 (320)
                      .+.+.....-+|+|+|||.|+++..+|...-        -+++.||+|+.+.+.-++++....                 
T Consensus        86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--------~~v~~vD~s~~~l~~a~~~~~~~~-----------------  140 (254)
T d1xtpa_          86 IASLPGHGTSRALDCGAGIGRITKNLLTKLY--------ATTDLLEPVKHMLEEAKRELAGMP-----------------  140 (254)
T ss_dssp             HHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--------SEEEEEESCHHHHHHHHHHTTTSS-----------------
T ss_pred             HhhCCCCCCCeEEEecccCChhhHHHHhhcC--------ceEEEEcCCHHHHHhhhccccccc-----------------
Confidence            3344444556999999999999999876421        158999999999887777664310                 


Q ss_pred             CCCeEe-ecccccCC--CCCCEEEEEecccccccce
Q 020840          233 GTPVSW-HAALEQVP--SGFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       233 ~~~i~W-~~sleelp--~~~~~~iiANE~fDALPv~  265 (320)
                        .++. ..++++++  .+..=+|+++.+|--+|-+
T Consensus       141 --~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~  174 (254)
T d1xtpa_         141 --VGKFILASMETATLPPNTYDLIVIQWTAIYLTDA  174 (254)
T ss_dssp             --EEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHH
T ss_pred             --cceeEEccccccccCCCccceEEeeccccccchh
Confidence              1221 12233332  2224588888999888754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.023  Score=48.23  Aligned_cols=85  Identities=8%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCC
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGT  234 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~  234 (320)
                      .++....-+|+|+|||+|.++..+.+.   .+     .+++-||+|+.+.+.-+++.....                .+.
T Consensus        28 ~~~l~pg~~VLDiGCG~G~~~~~la~~---~~-----~~v~GvD~s~~~~~~ar~~~~~~g----------------l~~   83 (245)
T d1nkva_          28 VLRMKPGTRILDLGSGSGEMLCTWARD---HG-----ITGTGIDMSSLFTAQAKRRAEELG----------------VSE   83 (245)
T ss_dssp             HTCCCTTCEEEEETCTTCHHHHHHHHH---TC-----CEEEEEESCHHHHHHHHHHHHHTT----------------CTT
T ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHh---cC-----CEEEEEecccchhhHHHHHHHHhh----------------ccc
Confidence            345444458999999999988876543   11     368999999999876555443210                012


Q ss_pred             CeEee-cccccC-CCCCCEEEEEeccccccc
Q 020840          235 PVSWH-AALEQV-PSGFPTIIVAHEFYDALP  263 (320)
Q Consensus       235 ~i~W~-~sleel-p~~~~~~iiANE~fDALP  263 (320)
                      ++.+. .+..++ +.+..-+|++.+.+.-+|
T Consensus        84 ~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  114 (245)
T d1nkva_          84 RVHFIHNDAAGYVANEKCDVAACVGATWIAG  114 (245)
T ss_dssp             TEEEEESCCTTCCCSSCEEEEEEESCGGGTS
T ss_pred             cchhhhhHHhhccccCceeEEEEEehhhccC
Confidence            34443 222332 233235788888888776

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.12  E-value=0.0099  Score=50.11  Aligned_cols=54  Identities=28%  Similarity=0.362  Sum_probs=36.4

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++.+.+...-.+  -+|+|+|||+|.++..+.    +.  .   -+++-||+|+.+.+.-++++.
T Consensus        10 ~~~~~~~~~~~~--~~VLDiGcG~G~~~~~l~----~~--g---~~v~giD~s~~~i~~a~~~~~   63 (225)
T d2p7ia1          10 FMVRAFTPFFRP--GNLLELGSFKGDFTSRLQ----EH--F---NDITCVEASEEAISHAQGRLK   63 (225)
T ss_dssp             HHHHHHGGGCCS--SCEEEESCTTSHHHHHHT----TT--C---SCEEEEESCHHHHHHHHHHSC
T ss_pred             HHHHHhhhhCCC--CcEEEEeCCCcHHHHHHH----Hc--C---CeEEEEeCcHHHhhhhhcccc
Confidence            334444443333  379999999999876542    21  1   258999999998887766654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0033  Score=53.73  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|||+|.++..+++.   .+     -+++.||+||.+.+.-+++...
T Consensus        55 ~~VLdIGcG~G~~a~~~a~~---~~-----~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          55 GRVLEVGFGMAIAASKVQEA---PI-----DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             EEEEEECCTTSHHHHHHHTS---CE-----EEEEEEECCHHHHHHHHHHGGG
T ss_pred             CeEEEeeccchHHHHHHHHc---CC-----CeEEEeCCCHHHHHHHHHHhhh
Confidence            58999999999988876542   12     2689999999998887776643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.013  Score=48.75  Aligned_cols=55  Identities=18%  Similarity=0.220  Sum_probs=37.4

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       147 ~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .++.....+... .+.+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++.
T Consensus        30 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~---------~~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          30 RLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQER---------GFEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             HHHHHHHHHHCC-SCCEEEEETCTTCHHHHHHHTT---------TCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-CCCEEEEECCCCchhccccccc---------ceEEEEeeccccccccccccc
Confidence            333333333333 3458999999999999866321         136999999999987666654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.003  Score=56.03  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=34.1

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .-.|+|||||.|.|...+++..         -+++.||+.+.|.+.-+++.
T Consensus        22 ~d~vlEIGpG~G~LT~~Ll~~~---------~~v~aiEiD~~l~~~L~~~~   63 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEPVGERL---------DQLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTTC---------SCEEEECCCHHHHHHHHTCT
T ss_pred             CCEEEEECCCchHHHHHHHccC---------CceEEEEeccchhHHHHHHh
Confidence            3479999999999999988631         25899999999988776644

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.01  Score=53.94  Aligned_cols=48  Identities=21%  Similarity=0.335  Sum_probs=39.1

Q ss_pred             CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .++..+|+|+|||.|.|...+|+..+.       -+++.||+.+.+.+.-++++.
T Consensus        41 ~~~~~~VlEIGPG~G~LT~~Ll~~~~~-------~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_          41 HPEELKVLDLYPGVGIQSAIFYNKYCP-------RQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             CTTTCEEEEESCTTCHHHHHHHHHHCC-------SEEEEECCCHHHHHHHHHHTT
T ss_pred             ccCCCeEEEECCCCCHHHHHHHhcCCC-------CEEEEEECCHHHHHHHHHhcc
Confidence            345679999999999999999987531       168999999999988777654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.032  Score=48.53  Aligned_cols=45  Identities=11%  Similarity=0.186  Sum_probs=34.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ++.+|+|+|||+|.++..+.+..   |+    .+++-||+|+.+.+.-++++
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~---~~----~~~~giD~s~~~~~~a~~~~  128 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADAL---PE----ITTFGLDVSKVAIKAAAKRY  128 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC---TT----SEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC---CC----CEEEEecchHhhhhhhhccc
Confidence            44689999999999988876542   32    46888999999877655544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.80  E-value=0.014  Score=50.36  Aligned_cols=91  Identities=19%  Similarity=0.235  Sum_probs=54.9

Q ss_pred             hcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCccc
Q 020840          111 LTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE  190 (320)
Q Consensus       111 LY~P~~GYY~~~~~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~  190 (320)
                      +|-|+.-|--..-++| .|-++.+|.+       .|+.+..+..  ...+.-+|+|+|+|+|.++.-+-+.+... ....
T Consensus        41 ~Fvp~~aY~D~~lpi~-~~~~is~P~~-------~a~~l~~L~~--~l~~g~~VLeIGtGsGY~ta~la~l~g~~-g~~~  109 (223)
T d1r18a_          41 HYSPRNPYMDAPQPIG-GGVTISAPHM-------HAFALEYLRD--HLKPGARILDVGSGSGYLTACFYRYIKAK-GVDA  109 (223)
T ss_dssp             GTCSSCTTBSSCEEEE-TTEEECCHHH-------HHHHHHHTTT--TCCTTCEEEEESCTTSHHHHHHHHHHHHS-CCCT
T ss_pred             HcCCccccCCCCcccc-CCceeehhhh-------HHHHHHHHhh--ccCCCCeEEEecCCCCHHHHHHHHHhhhc-cCCc
Confidence            4456554433334565 4667787765       2322221111  22223599999999999998776655432 1222


Q ss_pred             ceeEEEEecChhhHHHHHHhcc
Q 020840          191 SLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       191 ~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..+++-||.++.|.+.-++++.
T Consensus       110 ~~~V~~iE~~~~l~~~a~~~l~  131 (223)
T d1r18a_         110 DTRIVGIEHQAELVRRSKANLN  131 (223)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccEEEEEecCHHHHHHHHHhhh
Confidence            3478999999999887766653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.79  E-value=0.024  Score=49.49  Aligned_cols=53  Identities=19%  Similarity=0.316  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       146 A~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      ..|+.+.+...+.   -+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++
T Consensus        45 ~~~l~~~l~~~~~---~~vLD~GcG~G~~~~~la~~---------g~~v~gvD~S~~ml~~A~~~   97 (292)
T d1xvaa_          45 KAWLLGLLRQHGC---HRVLDVACGTGVDSIMLVEE---------GFSVTSVDASDKMLKYALKE   97 (292)
T ss_dssp             HHHHHHHHHHTTC---CEEEESSCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCC---CEEEEecCCCcHHHHHHHHc---------CCeeeeccCchHHHHHHHHH
Confidence            3566666655432   38999999999998887542         12689999999997755443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.67  E-value=0.034  Score=49.22  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhh
Q 020840          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERT  227 (320)
Q Consensus       148 ~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~  227 (320)
                      -+..+.+.++....-+|+|||||.|.++..+.+..        ..+++-|++|+...+.-+++.....            
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--------g~~v~gi~ls~~q~~~a~~~~~~~~------------   99 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--------DVNVIGLTLSKNQHARCEQVLASID------------   99 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHHTSC------------
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--------ceeEEEecchHHHHHHHHHHHHhhc------------
Confidence            34445556665555699999999999987765432        1369999999998876666654311            


Q ss_pred             hcccCCCCeEe-ecccccCCCCCCEEEEEecccccccce
Q 020840          228 ISSLAGTPVSW-HAALEQVPSGFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       228 ~~~~~~~~i~W-~~sleelp~~~~~~iiANE~fDALPv~  265 (320)
                          ....+.. .....+++.. .-.|++-|.|..++..
T Consensus       100 ----l~~~~~~~~~d~~~~~~~-fD~i~si~~~eh~~~~  133 (280)
T d2fk8a1         100 ----TNRSRQVLLQGWEDFAEP-VDRIVSIEAFEHFGHE  133 (280)
T ss_dssp             ----CSSCEEEEESCGGGCCCC-CSEEEEESCGGGTCGG
T ss_pred             ----cccchhhhhhhhhhhccc-hhhhhHhhHHHHhhhh
Confidence                0112222 1223344433 4578999999999764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0049  Score=58.32  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHH
Q 020840          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (320)
Q Consensus       138 sp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e  209 (320)
                      ..+|||++-..+.++.++++..+.-+|+|+|||.|.++..+.....       .-+++=||+|+.+.+.-++
T Consensus       194 ~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-------~~~v~GIDiS~~~i~~Ak~  258 (406)
T d1u2za_         194 NYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-------CALSFGCEIMDDASDLTIL  258 (406)
T ss_dssp             GGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-------CSEEEEEECCHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHH
Confidence            3568999988899999988865556899999999999888765532       1258899999998664443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.60  E-value=0.011  Score=50.20  Aligned_cols=55  Identities=13%  Similarity=0.093  Sum_probs=37.6

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       147 ~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .++.+.....+. ++-+|+|+|||+|.++..+.+.         ..+++-||.|+.+.+.-++++
T Consensus        25 ~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~---------g~~v~GvD~S~~ml~~A~~~~   79 (246)
T d1y8ca_          25 DFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK---------FKNTWAVDLSQEMLSEAENKF   79 (246)
T ss_dssp             HHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG---------SSEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHh---------CCccEeeccchhhhhhccccc
Confidence            344444444443 4458999999999987766431         126899999999877655544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.015  Score=49.44  Aligned_cols=53  Identities=23%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             HcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .++..+.-+|+|+|||+|.++.-+.+...      ...+++.||+++.+.+..++++..
T Consensus        70 ~l~l~~g~~VLdiG~GtG~~s~~la~~~~------~~g~V~~id~~~~~~~~a~~~~~~  122 (213)
T d1dl5a1          70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVG------EKGLVVSVEYSRKICEIAKRNVER  122 (213)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHC------TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccccceEEEecCccchhHHHHHHHhC------CCCcEEEeecchhhHHHhhhhHhh
Confidence            34444446999999999999987666542      223689999999999998888764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.016  Score=49.89  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=35.5

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|||+|.++.-+.+....      .-+++-||+++.+.+.-++++..
T Consensus        78 ~~VLdiG~GsGy~ta~la~l~~~------~g~V~~ie~~~~l~~~a~~~l~~  123 (224)
T d1i1na_          78 AKALDVGSGSGILTACFARMVGC------TGKVIGIDHIKELVDDSVNNVRK  123 (224)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCT------TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHhCC------CceEEEEcCCHHHHHHHHHhccc
Confidence            58999999999988765554321      23689999999999887777753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.36  E-value=0.013  Score=51.69  Aligned_cols=52  Identities=21%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++....-+|+|+|||+|.|+..+++.+...      -+++.+|.++.+.+.-++++..
T Consensus        81 l~i~pG~rVLEiG~GsG~lt~~la~~v~~~------g~V~~vD~~e~~~~~A~~n~~~  132 (250)
T d1yb2a1          81 CGLRPGMDILEVGVGSGNMSSYILYALNGK------GTLTVVERDEDNLKKAMDNLSE  132 (250)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHTTS------SEEEEECSCHHHHHHHHHHHHT
T ss_pred             cCCCCcCEEEEeeeeCcHHHHHHHHHhCCC------cEEEEEECCHHHHHHHHHHHHH
Confidence            444344699999999999999999887422      3689999999998888887754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.048  Score=45.84  Aligned_cols=99  Identities=9%  Similarity=-0.098  Sum_probs=56.0

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcccccc--CCcCcccchhhhcccCCC
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDE--NNANDNVEERTISSLAGT  234 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~--~~~~~~~~~~~~~~~~~~  234 (320)
                      +.+...+|+++|||+|.++.-+.+.         -.+++-||+|+...+..++.......  ......  ........+.
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~---------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~  110 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADR---------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIP--GTKVFKSSSG  110 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTST--TCEEEEETTS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHHhhccccccchhccc--ccceeeecCC
Confidence            3444569999999999998877542         13689999999998765554432100  000000  0000011234


Q ss_pred             CeEeecc-cccC---CCCCCEEEEEeccccccccee
Q 020840          235 PVSWHAA-LEQV---PSGFPTIIVAHEFYDALPVHQ  266 (320)
Q Consensus       235 ~i~W~~s-leel---p~~~~~~iiANE~fDALPv~~  266 (320)
                      .+.|... +.++   ..+..-+|+...+|-++|.+.
T Consensus       111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~  146 (229)
T d2bzga1         111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD  146 (229)
T ss_dssp             SEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG
T ss_pred             cEEEEEcchhhccccccCceeEEEEEEEEEeccchh
Confidence            5665421 2222   122245788899999998664

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=95.24  E-value=0.044  Score=47.43  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=33.8

Q ss_pred             CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      +..-+|+|+|||+|.++..+++.   +|+    ++++.+|. |...+.-++++.
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~---~P~----~~~~~~Dl-p~~~~~a~~~~~  125 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALR---APH----LRGTLVEL-AGPAERARRRFA  125 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCHHHHHHHHh---hcC----cEEEEecC-hHHHHHHHHHHh
Confidence            33348999999999999998864   443    57899997 555555555554

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.11  E-value=0.011  Score=51.08  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=35.9

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHh
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~  210 (320)
                      +...+.-+|+++|||+|+.+..+.+..   |+    -.++-||+||.+.+.-+++
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~---~~----g~V~aVDiS~~~i~~a~~~  117 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIA---DK----GIVYAIEYAPRIMRELLDA  117 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHT---TT----SEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhC---CC----CEEEEEeCcHHHHHHHHHH
Confidence            333345699999999999999988753   22    3689999999987654443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.026  Score=49.84  Aligned_cols=52  Identities=23%  Similarity=0.303  Sum_probs=41.2

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++..+.-+|+|+|||+|.++..+++.+..      .-+++-+|+|+.+.+.-++++..
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~------~G~V~~vD~~~~~~~~A~~~~~~  150 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGS------SGKVFAYEKREEFAKLAESNLTK  150 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTT------TCEEEEECCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCC------CcEEEEEeCCHHHHHHHHHHHHH
Confidence            45444569999999999999999887532      24689999999998887777754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.035  Score=48.76  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..|. -+|+|+|||+|.++....+    .     ..+++-||+||.+.+.-+++..
T Consensus       118 ~~~g-~~VLDiGcGsG~l~i~aa~----~-----g~~V~gvDis~~av~~A~~na~  163 (254)
T d2nxca1         118 LRPG-DKVLDLGTGSGVLAIAAEK----L-----GGKALGVDIDPMVLPQAEANAK  163 (254)
T ss_dssp             CCTT-CEEEEETCTTSHHHHHHHH----T-----TCEEEEEESCGGGHHHHHHHHH
T ss_pred             cCcc-CEEEEcccchhHHHHHHHh----c-----CCEEEEEECChHHHHHHHHHHH
Confidence            3443 4899999999998864322    1     1257899999999887766554

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.91  E-value=0.026  Score=50.09  Aligned_cols=52  Identities=19%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++.....+|+|+|||+|.|+..+.+.+..      .-+++-+|+++.+.+.-++++..
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp------~G~V~~~d~~~~~~~~Ar~n~~~  143 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGP------AGQVISYEQRADHAEHARRNVSG  143 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCT------TSEEEEECSCHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCC------CcEEEEecCCHHHHHHHHHhhhh
Confidence            44444469999999999999999998742      23689999999999888887754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.73  E-value=0.017  Score=49.94  Aligned_cols=51  Identities=16%  Similarity=0.077  Sum_probs=38.7

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ++..+.-+|+|+|||+|+++..+.+....      .-+++-||+||.+.+.-+++..
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~------~G~V~aVD~s~~~l~~a~~~a~  119 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGW------EGKIFGIEFSPRVLRELVPIVE  119 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCT------TSEEEEEESCHHHHHHHHHHHS
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCC------CCEEEEEeCcHHHHHHHHHHHH
Confidence            34334469999999999999999887632      2368999999999776666543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=94.72  E-value=0.1  Score=44.48  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCC
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTP  235 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~  235 (320)
                      ......-+|+|+|||+|.++..+++.   +|+    ++++.+|.++.+... ++++....                ...+
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~---~p~----~~~~~~D~~~~~~~a-~~~~~~~~----------------~~~r  131 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARR---APH----VSATVLEMAGTVDTA-RSYLKDEG----------------LSDR  131 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEECTTHHHHH-HHHHHHTT----------------CTTT
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHh---cce----eEEEEccCHHHHHHH-HHHHHHhh----------------cccc
Confidence            34344458999999999999988764   343    478889986544333 33333210                1124


Q ss_pred             eEeec--ccccCCCCCCEEEEEecccccccc
Q 020840          236 VSWHA--ALEQVPSGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       236 i~W~~--sleelp~~~~~~iiANE~fDALPv  264 (320)
                      +.+..  -++..|.+ .-+|+.+.+|-.+|-
T Consensus       132 v~~~~~D~~~~~~~~-~D~v~~~~vlh~~~d  161 (253)
T d1tw3a2         132 VDVVEGDFFEPLPRK-ADAIILSFVLLNWPD  161 (253)
T ss_dssp             EEEEECCTTSCCSSC-EEEEEEESCGGGSCH
T ss_pred             hhhccccchhhcccc-hhheeeccccccCCc
Confidence            54432  12334443 246667777776764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.65  E-value=0.021  Score=46.95  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=35.4

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      +..+.-+|+|+|||+|.++..+++   ..      -+++-||+||.+.+.-+++++.
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~---~~------~~V~avD~~~~~l~~a~~n~~~   77 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAG---RV------RRVYAIDRNPEAISTTEMNLQR   77 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHT---TS------SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCeEcccccccc---cc------eEEEEecCCHHHHHHHHHHHHH
Confidence            333445899999999999876543   11      1578999999998877776653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.014  Score=52.79  Aligned_cols=58  Identities=16%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       147 ~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ..+.++.+.++..+.-.|+|+|||.|.++..+....   +    ..+++=||+|+.+.+..++.+
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~---~----~~~~~Gid~s~~~~~~a~~~~  195 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT---N----CKHHYGVEKADIPAKYAETMD  195 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHC---C----CSEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHh---C----CCeEEEEeCCHHHHHHHHHHH
Confidence            334445566666555689999999999988765432   2    235889999999977655544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.60  E-value=0.17  Score=45.01  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN  222 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~  222 (320)
                      ++--+-+-.+.++++....-+|+|||||-|.+|..+....   +     .+++-|.+|+...+.-+++.....  +.+  
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~---g-----~~v~git~s~~q~~~a~~~~~~~~--l~~--  111 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY---D-----VNVIGLTLSENQYAHDKAMFDEVD--SPR--  111 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHHSC--CSS--
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc---C-----cceeeccchHHHHHHHHHHHHhhc--cch--
Confidence            3333444445566776666799999999999988776542   2     368899999987665555443210  000  


Q ss_pred             cchhhhcccCCCCeEeecccccCCCCCCEEEEEecccccccc
Q 020840          223 VEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPV  264 (320)
Q Consensus       223 ~~~~~~~~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv  264 (320)
                                ...+.+.+ .... ++..=.|++.|.|..+|-
T Consensus       112 ----------~v~~~~~d-~~~~-~~~fD~i~sie~~eH~~~  141 (291)
T d1kpia_         112 ----------RKEVRIQG-WEEF-DEPVDRIVSLGAFEHFAD  141 (291)
T ss_dssp             ----------CEEEEECC-GGGC-CCCCSEEEEESCGGGTTC
T ss_pred             ----------hhhhhhhc-cccc-ccccceEeechhHHhcch
Confidence                      01222221 1222 222347999999999983

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.061  Score=47.78  Aligned_cols=46  Identities=22%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      .+.+|+|+|+|+|..+.-+...   .|+    .+++.||+|+...+.-+++..
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~---~p~----~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASE---RPD----CEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHH---CTT----SEEEEECSSHHHHHHHHHHHH
T ss_pred             cccceeeeehhhhHHHHHHHhh---CCc----ceeeeccchhHHHhHHHHHHH
Confidence            4578999999999998877654   233    479999999988776666553

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.47  E-value=0.047  Score=47.10  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=43.8

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      |-++++|++.   +.+        .+.+.....-+|+|+|||+|.++. +|..+.        -+++-||+++.+.+.-+
T Consensus        50 g~~~~~p~~~---a~m--------l~~L~l~~g~~VLdIG~GsGy~ta-~La~l~--------~~V~aiE~~~~~~~~A~  109 (224)
T d1vbfa_          50 GINTTALNLG---IFM--------LDELDLHKGQKVLEIGTGIGYYTA-LIAEIV--------DKVVSVEINEKMYNYAS  109 (224)
T ss_dssp             TEEECCHHHH---HHH--------HHHTTCCTTCEEEEECCTTSHHHH-HHHHHS--------SEEEEEESCHHHHHHHH
T ss_pred             CCceehhhhH---HHH--------HHHhhhcccceEEEecCCCCHHHH-HHHHHh--------cccccccccHHHHHHHH
Confidence            5567777652   222        222333334589999999999987 454442        15888999999998877


Q ss_pred             Hhccc
Q 020840          209 HNLKC  213 (320)
Q Consensus       209 e~L~~  213 (320)
                      +++..
T Consensus       110 ~~~~~  114 (224)
T d1vbfa_         110 KLLSY  114 (224)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            76653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.32  E-value=0.026  Score=47.94  Aligned_cols=49  Identities=18%  Similarity=0.087  Sum_probs=35.8

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      ++..+.-+|+|+|||+|+++..+.+..   |    ..+++-||+||.+.+.-+++.
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v---~----~g~V~gvDis~~~i~~a~~~a  100 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIV---D----EGIIYAVEYSAKPFEKLLELV  100 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHT---T----TSEEEEECCCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhc---c----CCeEEEEeCCHHHHHHHHHHh
Confidence            343344699999999999999887653   2    237999999998876544443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.04  E-value=0.051  Score=46.31  Aligned_cols=43  Identities=14%  Similarity=0.060  Sum_probs=30.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -+|+|+|||+|..+..+.+.   .     ..+|+-||+|+.+.+.-+++..
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~---~-----~~~v~GiD~S~~~l~~A~~r~~   68 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERA---G-----IGEYYGVDIAEVSINDARVRAR   68 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHH---T-----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEecccCcHHHHHHHHc---C-----CCeEEEecCCHHHHHHHHHHHH
Confidence            58999999999865544332   1     1268999999999776665543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.02  E-value=0.05  Score=46.63  Aligned_cols=70  Identities=24%  Similarity=0.362  Sum_probs=48.3

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       124 ~~G~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      ++| .|-++.+|.+.   |.+        ++.++..+.-+|+|+|+|+|.++. +|..+..       .+++.||..+.|
T Consensus        54 ~i~-~g~~is~P~~~---a~m--------l~~L~l~~g~~VLeIGsGsGY~ta-ila~l~g-------~~V~~ie~~~~l  113 (215)
T d1jg1a_          54 PIP-AGQTVSAPHMV---AIM--------LEIANLKPGMNILEVGTGSGWNAA-LISEIVK-------TDVYTIERIPEL  113 (215)
T ss_dssp             ECS-TTCEECCHHHH---HHH--------HHHHTCCTTCCEEEECCTTSHHHH-HHHHHHC-------SCEEEEESCHHH
T ss_pred             ccc-hhhhhhhhhhH---HHH--------HHhhccCccceEEEecCCCChhHH-HHHHhhC-------ceeEEEeccHHH
Confidence            455 46688887642   222        223344344599999999999998 5555422       248899999999


Q ss_pred             HHHHHHhccc
Q 020840          204 QKLQHHNLKC  213 (320)
Q Consensus       204 r~~Q~e~L~~  213 (320)
                      .+.-+++|..
T Consensus       114 ~~~a~~~l~~  123 (215)
T d1jg1a_         114 VEFAKRNLER  123 (215)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988888864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.059  Score=48.99  Aligned_cols=52  Identities=19%  Similarity=0.208  Sum_probs=40.6

Q ss_pred             cCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++....-+|+|+|+|+|.|+..+.+.+..      .-+++-+|+++.+.+.-++++..
T Consensus        94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~------~G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          94 MDINPGDTVLEAGSGSGGMSLFLSKAVGS------QGRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCT------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEecccccHHHHHHHHHhCC------CcEEEEecCCHHHHHHHHHHHHH
Confidence            44434459999999999999999988742      23688999999998877776653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=93.91  E-value=0.057  Score=44.08  Aligned_cols=65  Identities=18%  Similarity=0.110  Sum_probs=40.9

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcccchhhhcccCCCCeEeeccc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAAL  242 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~i~W~~sl  242 (320)
                      +|+|+|||+|.++..+    +         +.+-||+||.+.+.-+++=.                      .+. ..+.
T Consensus        39 ~vLDiGcG~G~~~~~~----~---------~~~giD~s~~~~~~a~~~~~----------------------~~~-~~d~   82 (208)
T d1vlma_          39 RGVEIGVGTGRFAVPL----K---------IKIGVEPSERMAEIARKRGV----------------------FVL-KGTA   82 (208)
T ss_dssp             CEEEETCTTSTTHHHH----T---------CCEEEESCHHHHHHHHHTTC----------------------EEE-ECBT
T ss_pred             eEEEECCCCccccccc----c---------eEEEEeCChhhccccccccc----------------------ccc-cccc
Confidence            7999999999876543    1         13578999998876444200                      010 1112


Q ss_pred             ccCC--CCCCEEEEEeccccccc
Q 020840          243 EQVP--SGFPTIIVAHEFYDALP  263 (320)
Q Consensus       243 eelp--~~~~~~iiANE~fDALP  263 (320)
                      ++++  .+..-+|+++.+|..+|
T Consensus        83 ~~l~~~~~~fD~I~~~~~l~h~~  105 (208)
T d1vlma_          83 ENLPLKDESFDFALMVTTICFVD  105 (208)
T ss_dssp             TBCCSCTTCEEEEEEESCGGGSS
T ss_pred             ccccccccccccccccccccccc
Confidence            3332  22245889999999987

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.51  E-value=0.11  Score=48.00  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhc-CcCc-----ccceeEEEEecC
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF-----TESLHIHLVECS  200 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~-----~~~l~y~iVE~S  200 (320)
                      ..|.|+|+.+|..+.-+++           +.....+|+|-.||+|.|...++++++. ....     .....++-+|++
T Consensus       140 ~~G~f~TP~~Iv~~mv~ll-----------~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~  208 (425)
T d2okca1         140 GAGQYFTPRPLIQAMVDCI-----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT  208 (425)
T ss_dssp             CCGGGCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred             cchhhccchhhhHhhheec-----------cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc
Confidence            3589999999876544332           2223458999999999999999999864 2221     112358899999


Q ss_pred             hhhHHHHHHhc
Q 020840          201 PTLQKLQHHNL  211 (320)
Q Consensus       201 p~Lr~~Q~e~L  211 (320)
                      +.....-+-.+
T Consensus       209 ~~~~~la~~n~  219 (425)
T d2okca1         209 PLVVTLASMNL  219 (425)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            99987766544

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.08  E-value=0.11  Score=43.91  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=47.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       135 pEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      ..|+|--|+.|...+.     ...|  -+|+|+|+|.|.-+.-+++.+.      +.-+++.||+++...+..++.+.
T Consensus        38 m~i~~~~G~lL~~lv~-----~~kp--k~ILEiGt~~G~Sti~la~al~------~~g~v~sid~~~~~~~~a~~~~~  102 (214)
T d2cl5a1          38 MNVGDAKGQIMDAVIR-----EYSP--SLVLELGAYCGYSAVRMARLLQ------PGARLLTMEMNPDYAAITQQMLN  102 (214)
T ss_dssp             CSCHHHHHHHHHHHHH-----HHCC--SEEEEECCTTSHHHHHHHTTCC------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHH-----hhCC--CEEEEEccCchhHHHHHHHhCC------CccEEEEEeccHHHHHHHHHHHH
Confidence            3577888887765543     2233  4899999999998887765542      23479999999999888887764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.016  Score=50.30  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=34.2

Q ss_pred             CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      |..+..+|+|+|||+|.+..  +..   .+.+   -+++.+|.|+.+.+.-++.+..
T Consensus        51 g~~~g~~vLDiGcG~g~~~~--~~~---~~~~---~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQL--LSA---CSHF---EDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGG--TTG---GGGC---SEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEeccCCCHHHH--HHh---cccC---CeEEEEeCCHHHHHHHHHHHhc
Confidence            55556799999999996532  111   1111   2699999999999887777754

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.69  E-value=0.08  Score=43.30  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .+..-+|+|.|||+|.|+..+.+...      ....++.+|+.+.....+
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~------~~~~i~g~ei~~~~~~~~   60 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHG------TAYRFVGVEIDPKALDLP   60 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHC------SCSEEEEEESCTTTCCCC
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhcc------ccceEEeeecCHHHHhhc
Confidence            33445999999999999877766542      224688999998875443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=92.41  E-value=0.11  Score=42.43  Aligned_cols=59  Identities=17%  Similarity=0.199  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       141 FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -=|+|..|+...     .+..-+|+|+|||+|.++...+.   .      ..+.+.||.|+...+.-++.++.
T Consensus        27 v~e~lf~~l~~~-----~~~g~~vLDl~~G~G~~~i~a~~---~------ga~vv~vD~~~~a~~~~~~N~~~   85 (171)
T d1ws6a1          27 LRKALFDYLRLR-----YPRRGRFLDPFAGSGAVGLEAAS---E------GWEAVLVEKDPEAVRLLKENVRR   85 (171)
T ss_dssp             HHHHHHHHHHHH-----CTTCCEEEEETCSSCHHHHHHHH---T------TCEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc-----ccCCCeEEEeccccchhhhhhhh---c------cchhhhcccCHHHHhhhhHHHHh
Confidence            356666666432     22234899999999998754332   2      12467899999999888777653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.043  Score=46.07  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=37.7

Q ss_pred             HHHHHHHHHc---CCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          147 VWAMCLWEQM---GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       147 ~~i~~~w~~~---g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      .|+...+.+.   +..+..+|+|+|||+|.++.-+.   .  +.   .-+++-||+|+.+.+.-++++..
T Consensus        35 ~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~---~--~~---~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          35 KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA---C--DS---FQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             HHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG---G--GT---EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHh---c--cc---cCcEEEecCCHHHHHHHHHHHhh
Confidence            3444444332   33345689999999998653111   1  11   12689999999998877777653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.80  E-value=0.11  Score=43.70  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=31.3

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhc
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L  211 (320)
                      .|+|||||+|..+..+..   .+|+    ..|+-||+++.....-.++.
T Consensus        32 lvLeIGcG~G~~~~~lA~---~~p~----~~~iGiD~~~~~i~~a~~~~   73 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMAK---QNPD----INYIGIELFKSVIVTAVQKV   73 (204)
T ss_dssp             EEEEECCTTSHHHHHHHH---HCTT----SEEEEECSCHHHHHHHHHHH
T ss_pred             eEEEEEecCcHHHHHHHH---hCCC----CcEEEeecchHHHHHHHHHH
Confidence            699999999998877643   3555    36999999988765444433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.32  E-value=0.79  Score=40.25  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccccccCCcCcc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN  222 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~~~~~~~~~~  222 (320)
                      ++--+-+-.+.++++..+.-+|+|||||-|.+|..+.+..        .++++-|.+|+.-.+.-+++....  .+.+  
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--------g~~v~git~s~~Q~~~a~~~~~~~--g~~~--  112 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--------DVNVVGLTLSKNQANHVQQLVANS--ENLR--  112 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHHTC--CCCS--
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--------CcceEEEeccHHHHHHHHHHHHhh--hhhh--
Confidence            4444444445556665555699999999999998876642        247999999998776555544321  0000  


Q ss_pred             cchhhhcccCCCCeEeecccccCCCCCCEEEEEecccccccce
Q 020840          223 VEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH  265 (320)
Q Consensus       223 ~~~~~~~~~~~~~i~W~~sleelp~~~~~~iiANE~fDALPv~  265 (320)
                                ...+.+. +..+++.. .--|++-|.|..++..
T Consensus       113 ----------~v~~~~~-d~~~~~~~-fD~i~si~~~eh~~~~  143 (285)
T d1kpga_         113 ----------SKRVLLA-GWEQFDEP-VDRIVSIGAFEHFGHE  143 (285)
T ss_dssp             ----------CEEEEES-CGGGCCCC-CSEEEEESCGGGTCTT
T ss_pred             ----------hhHHHHh-hhhccccc-ccceeeehhhhhcCch
Confidence                      0123322 23344443 3468999999999754

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.31  E-value=0.097  Score=41.66  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=33.8

Q ss_pred             cceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ..+|+|+|||+|.++...+..        .+-+++.||.++...+.-++.+..
T Consensus        15 g~~vlDl~~GtG~~~iea~~r--------ga~~v~~ve~~~~a~~~~~~n~~~   59 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSR--------GMSAAVLVEKNRKAQAIIQDNIIM   59 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT--------TCCEEEEECCCHHHHHHHHHHHHT
T ss_pred             CCeEEEcCCccCHHHHHHHHh--------Ccceeeeehhchhhhhhhhhhhhh
Confidence            358999999999998754421        122799999999998876666643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.29  E-value=0.16  Score=42.76  Aligned_cols=37  Identities=14%  Similarity=0.341  Sum_probs=28.1

Q ss_pred             eEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHH
Q 020840          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (320)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~  206 (320)
                      .|+|||||+|.++..+..   .+|+.    .++-||+++.....
T Consensus        34 lvLdIGcG~G~~~~~lA~---~~p~~----~~iGid~~~~~v~~   70 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMAK---QNPDI----NYIGIDIQKSVLSY   70 (204)
T ss_dssp             EEEEESCTTSHHHHHHHH---HCTTS----EEEEEESCHHHHHH
T ss_pred             eEEEEeccCCHHHHHHHH---HCCCC----ceEEEeccHHHHHH
Confidence            689999999997766533   45653    69999999875443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.19  Score=42.88  Aligned_cols=64  Identities=13%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       137 Isp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ++|.-|..|+.-+     ++-.|+  +|+|+|.|.|.=+.-+++++.      +.-+++.||.+|...+..++.+..
T Consensus        43 i~~~~g~lL~~L~-----~~~~~k--~vLEiGt~~GyStl~~a~al~------~~g~i~tie~~~~~~~~A~~~~~~  106 (219)
T d2avda1          43 MTCEQAQLLANLA-----RLIQAK--KALDLGTFTGYSALALALALP------ADGRVVTCEVDAQPPELGRPLWRQ  106 (219)
T ss_dssp             CCHHHHHHHHHHH-----HHTTCC--EEEEECCTTSHHHHHHHTTSC------TTCEEEEEESCSHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH-----HccCCC--eEEEEechhhHHHHHHHHhCC------CCceEEEEeechhHHHHHHHHHHh
Confidence            3455555554322     233443  899999999999988887653      234799999999999988887753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.1  Score=45.89  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=28.8

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      -+|+|+|||+|.|+.-..+.-        +-+++.||.|+.+...++
T Consensus        37 ~~VLDiGcG~G~lsl~aa~~G--------a~~V~aid~s~~~~~a~~   75 (311)
T d2fyta1          37 KVVLDVGCGTGILSMFAAKAG--------AKKVLGVDQSEILYQAMD   75 (311)
T ss_dssp             CEEEEETCTTSHHHHHHHHTT--------CSEEEEEESSTHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHcC--------CCEEEEEeCHHHHHHHHH
Confidence            489999999999876554421        126899999998765443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=90.74  E-value=0.33  Score=42.75  Aligned_cols=59  Identities=17%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      |.|..++...+...+.   ..++|+|+|+|..+.-+..    +|+    .+++.+|+||.-.+.-+++..
T Consensus        96 E~lv~~~~~~~~~~~~---~~vld~g~GsG~i~~~la~----~~~----~~v~a~Dis~~Al~~A~~Na~  154 (271)
T d1nv8a_          96 EELVELALELIRKYGI---KTVADIGTGSGAIGVSVAK----FSD----AIVFATDVSSKAVEIARKNAE  154 (271)
T ss_dssp             HHHHHHHHHHHHHHTC---CEEEEESCTTSHHHHHHHH----HSS----CEEEEEESCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccc---cEEEEeeeeeehhhhhhhh----ccc----ceeeechhhhhHHHHHHHHHH
Confidence            6677777777666553   4899999999998766543    233    369999999998777666554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.42  Score=41.16  Aligned_cols=47  Identities=11%  Similarity=0.074  Sum_probs=37.1

Q ss_pred             CcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      ...+++|+|+|+|..+.-+...+   |+    .+++.+|+|+...+.-++.+..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~---~~----~~~~~~Di~~~al~~A~~N~~~  107 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL---NG----WYFLATEVDDMCFNYAKKNVEQ  107 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH---HC----CEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhC---CC----ccccceecCHHHHHHHHHHHHH
Confidence            45799999999999988776554   22    4799999999998877776643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.62  E-value=0.21  Score=44.08  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      -+|+|+|||+|.|+.-..+.    .    +-+++-||.|+.+...+
T Consensus        35 ~~VLDiGcG~G~ls~~aa~~----G----a~~V~avd~s~~~~~a~   72 (316)
T d1oria_          35 KVVLDVGSGTGILCMFAAKA----G----ARKVIGIECSSISDYAV   72 (316)
T ss_dssp             CEEEEETCTTSHHHHHHHHT----T----CSEEEEEECSTTHHHHH
T ss_pred             CEEEEEecCCcHHHHHHHHh----C----CCEEEEEcCcHHHhhhh
Confidence            37999999999987654432    1    12588999999764443

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=87.71  E-value=0.47  Score=44.95  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcC-cCcc----------cceeEE
Q 020840          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNFT----------ESLHIH  195 (320)
Q Consensus       127 ~~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~-p~~~----------~~l~y~  195 (320)
                      ..|-|||+.+|..+.-+++           ......+|++-.||+|.|...+.++++.. ....          ....++
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll-----------~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  210 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI  210 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE
T ss_pred             ccchhccccchhHhhhhcc-----------cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhh
Confidence            4599999999886654432           22223589999999999999999998642 2211          122588


Q ss_pred             EEecChhhHHHHHHhc
Q 020840          196 LVECSPTLQKLQHHNL  211 (320)
Q Consensus       196 iVE~Sp~Lr~~Q~e~L  211 (320)
                      -+|+.+.+...-+-.+
T Consensus       211 G~E~~~~~~~la~~nl  226 (524)
T d2ar0a1         211 GLELVPGTRRLALMNC  226 (524)
T ss_dssp             EEESCHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHH
Confidence            9999999887665444

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=87.51  E-value=0.45  Score=42.54  Aligned_cols=73  Identities=15%  Similarity=0.288  Sum_probs=48.3

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|+.-++..---.|=|+++.--+     +..|.+-+|+.+|+|.|.++..+|++.       ...++.+||+.|.+.+.-
T Consensus        50 dg~~q~~~~de~~Yhe~l~h~~l-----~~~~~pk~VLiiG~G~G~~~~~ll~~~-------~~~~v~~VEiD~~Vi~~a  117 (312)
T d1uira_          50 DKDVQSTERDEYIYHETLVHPAM-----LTHPEPKRVLIVGGGEGATLREVLKHP-------TVEKAVMVDIDGELVEVA  117 (312)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHH-----HHSSCCCEEEEEECTTSHHHHHHTTST-------TCCEEEEEESCHHHHHHH
T ss_pred             CCeeeeccccHHHHHHHHhhhhh-----hhCCCcceEEEeCCCchHHHHHHHhcC-------CcceEEEecCCHHHHHHH
Confidence            45443332223456777765322     123444589999999999988887531       124799999999998887


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++.+.
T Consensus       118 ~~~f~  122 (312)
T d1uira_         118 KRHMP  122 (312)
T ss_dssp             HHHCH
T ss_pred             HhcCc
Confidence            77763

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.03  E-value=0.27  Score=43.53  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=25.4

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhH
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr  204 (320)
                      -.|+|+|||+|.|+.-..+.    .    +-+++.||.|+.+.
T Consensus        40 ~~VLDlGcGtG~ls~~aa~~----G----a~~V~avd~s~~~~   74 (328)
T d1g6q1_          40 KIVLDVGCGTGILSMFAAKH----G----AKHVIGVDMSSIIE   74 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHT----C----CSEEEEEESSTHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHh----C----CCEEEEEeCCHHHH
Confidence            38999999999987644332    1    12689999998553

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.54  Score=38.29  Aligned_cols=56  Identities=18%  Similarity=0.177  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       143 e~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      |+|..++....      ...++++++||+|.++...|..        .+-+++.||.++...+.-++.+.
T Consensus        32 e~lfn~l~~~~------~~~~vLDlfaGsG~~giealsr--------Ga~~v~~VE~~~~a~~~~k~N~~   87 (183)
T d2fpoa1          32 ETLFNWLAPVI------VDAQCLDCFAGSGALGLEALSR--------YAAGATLIEMDRAVSQQLIKNLA   87 (183)
T ss_dssp             HHHHHHHHHHH------TTCEEEETTCTTCHHHHHHHHT--------TCSEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHhhhhccc------chhhhhhhhccccceeeeEEec--------CcceeEEEEEeechhhHHHHHHh
Confidence            55555554332      1248999999999999765532        11268999999999886666664

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=84.77  E-value=1.1  Score=38.13  Aligned_cols=46  Identities=15%  Similarity=0.063  Sum_probs=38.3

Q ss_pred             ceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhccc
Q 020840          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (320)
Q Consensus       162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~~  213 (320)
                      -+|+|+|.+.|.=+.-+.+++..      .-+++.+|.+|...+..++.+..
T Consensus        61 k~iLEiGT~~GyStl~la~al~~------~g~v~tie~~~~~~~~A~~~~~~  106 (227)
T d1susa1          61 KNTMEIGVYTGYSLLATALAIPE------DGKILAMDINKENYELGLPVIKK  106 (227)
T ss_dssp             CEEEEECCGGGHHHHHHHHHSCT------TCEEEEEESCCHHHHHHHHHHHH
T ss_pred             CcEEEecchhhhhHHHHHhhCCC------CcEEEEEeccchhHHHHHHHHHH
Confidence            38999999999999988887642      23789999999999988887753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=84.70  E-value=1.1  Score=38.20  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=39.4

Q ss_pred             CChhHHHHHHHHHHH---HH-HHHHcC-CCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecCh
Q 020840          135 PEVSQMFGEMVGVWA---MC-LWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (320)
Q Consensus       135 pEIsp~FGe~IA~~i---~~-~w~~~g-~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp  201 (320)
                      |+....|..+.+.+-   .. +.+... .+..-+||++|+|+|+++..|++.   +|+    ++.++.|..+
T Consensus        51 p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~---~P~----l~~~v~Dlp~  115 (244)
T d1fp1d2          51 KKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISK---YPL----IKGINFDLPQ  115 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHH---CCC----CeEEEecchh
Confidence            677777776554322   22 223333 344568999999999999998775   454    4678888643

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=84.31  E-value=1.2  Score=37.65  Aligned_cols=62  Identities=13%  Similarity=0.289  Sum_probs=40.1

Q ss_pred             CChhHHHHHHHHHHHH----HHHHHcCC-CCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhh
Q 020840          135 PEVSQMFGEMVGVWAM----CLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (320)
Q Consensus       135 pEIsp~FGe~IA~~i~----~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L  203 (320)
                      |+....|....+.+-.    .++..... ...-+||++|+|+|.++..|++.   +|+    ++.+++|..+..
T Consensus        51 p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp~vi  117 (243)
T d1kyza2          51 PRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK---YPT----IKGINFDLPHVI  117 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHH---CTT----SEEEEEECTTTT
T ss_pred             HHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHH---CCC----CeEEEcccHHhh
Confidence            5666677765554322    23333322 22357999999999999999864   454    467888876543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=83.49  E-value=1.1  Score=39.16  Aligned_cols=73  Identities=21%  Similarity=0.352  Sum_probs=52.3

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|++-++-.-...|-|+++.-.+.     ..+.+-+|+-+|.|.|..++.+|++.    .   ..++.+||+.|...+.-
T Consensus        48 Dg~~q~~~~de~~Yhe~l~h~~l~-----~~~~p~~vLiiGgG~G~~~~~~l~~~----~---~~~i~~VEID~~Vi~~a  115 (274)
T d1iy9a_          48 DGMVMTSEKDEFVYHEMVAHVPLF-----THPNPEHVLVVGGGDGGVIREILKHP----S---VKKATLVDIDGKVIEYS  115 (274)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHHH-----HSSSCCEEEEESCTTCHHHHHHTTCT----T---CSEEEEEESCHHHHHHH
T ss_pred             CCceeeecCchhhchhhhccchhh-----ccCCcceEEecCCCCcHHHHHHHhcC----C---cceEEEecCCHHHHHHH
Confidence            566665544456788887665542     23344589999999999988887542    1   23799999999999988


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++.+.
T Consensus       116 ~~~~~  120 (274)
T d1iy9a_         116 KKFLP  120 (274)
T ss_dssp             HHHCH
T ss_pred             HHhCh
Confidence            87764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.64  E-value=1.2  Score=39.57  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHHHhcc
Q 020840          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (320)
Q Consensus       139 p~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~e~L~  212 (320)
                      -.|=|+++.--+.     -.|.+-+|+-+|+|.|..++.+|++    +.   ..++.+||+.|...+.-++.+.
T Consensus        73 ~~YhE~l~h~pl~-----~~~~pk~VLiiGgG~G~~~r~~l~~----~~---~~~i~~VEIDp~Vi~~a~~~~~  134 (295)
T d1inla_          73 FMYHEMLAHVPMF-----LHPNPKKVLIIGGGDGGTLREVLKH----DS---VEKAILCEVDGLVIEAARKYLK  134 (295)
T ss_dssp             HHHHHHHHHHHHH-----HSSSCCEEEEEECTTCHHHHHHTTS----TT---CSEEEEEESCHHHHHHHHHHCH
T ss_pred             hhhhhhhcchhHh-----hCCCCceEEEecCCchHHHHHHHhc----CC---CceEEEecCCHHHHHHHHHHHH
Confidence            4677777654332     1344569999999999988877653    21   2369999999999998887664

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.39  E-value=0.65  Score=40.59  Aligned_cols=72  Identities=17%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHH
Q 020840          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (320)
Q Consensus       128 ~GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q  207 (320)
                      .|++-.+..-.-.|-|+++.-.+.     -.|.+-+|+-+|+|.|..+..+|++    +    ..++.+||+.|.+.+.-
T Consensus        45 dg~~q~~~~de~~Yhe~l~~~~l~-----~~~~p~~vLiiG~G~G~~~~~~l~~----~----~~~v~~VEiD~~Vi~~a  111 (276)
T d1mjfa_          45 DGTVQLVTLGERSYHEPLVHPAML-----AHPKPKRVLVIGGGDGGTVREVLQH----D----VDEVIMVEIDEDVIMVS  111 (276)
T ss_dssp             TTEEEEETTTTHHHHHHHHHHHHH-----HSSCCCEEEEEECTTSHHHHHHTTS----C----CSEEEEEESCHHHHHHH
T ss_pred             CCceeeeccchhHHHHHhhcchhh-----cCCCCceEEEecCCchHHHHHHHHh----C----CceEEEecCCHHHHHHH
Confidence            355543322234677776543221     1344569999999999988887642    2    12689999999999887


Q ss_pred             HHhcc
Q 020840          208 HHNLK  212 (320)
Q Consensus       208 ~e~L~  212 (320)
                      ++.+.
T Consensus       112 ~~~f~  116 (276)
T d1mjfa_         112 KDLIK  116 (276)
T ss_dssp             HHHTC
T ss_pred             HHhhh
Confidence            77653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.49  E-value=1.8  Score=37.92  Aligned_cols=72  Identities=14%  Similarity=0.267  Sum_probs=49.9

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchhHHHHHHHHHhcCcCcccceeEEEEecChhhHHHHH
Q 020840          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (320)
Q Consensus       129 GDFiTSpEIsp~FGe~IA~~i~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~  208 (320)
                      |..-++----..|-|+++.-.+     +..|.+-+++=+|.|.|..++.+|++    +   ...++++||+.|...+.-+
T Consensus        52 g~~q~~~~de~~Yhe~l~h~~l-----~~~~~pk~vLiiGgG~G~~~~~~l~~----~---~~~~v~~vEiD~~Vv~~a~  119 (285)
T d2o07a1          52 GVIQCTERDEFSYQEMIANLPL-----CSHPNPRKVLIIGGGDGGVLREVVKH----P---SVESVVQCEIDEDVIQVSK  119 (285)
T ss_dssp             TEEEEETTTHHHHHHHHHHHHH-----TTSSSCCEEEEEECTTSHHHHHHTTC----T---TCCEEEEEESCHHHHHHHH
T ss_pred             CcEEEecCCHHHHHHHhccHhh-----hhCcCcCeEEEeCCCchHHHHHHHHc----C---CcceeeeccCCHHHHHHHH
Confidence            4443332223577888765443     34455568999999999988887653    2   2247999999999999888


Q ss_pred             Hhcc
Q 020840          209 HNLK  212 (320)
Q Consensus       209 e~L~  212 (320)
                      +.+.
T Consensus       120 ~~~~  123 (285)
T d2o07a1         120 KFLP  123 (285)
T ss_dssp             HHCH
T ss_pred             hhch
Confidence            7764