Citrus Sinensis ID: 020848
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 320 | 2.2.26 [Sep-21-2011] | |||||||
| P54967 | 378 | Biotin synthase OS=Arabid | yes | no | 0.940 | 0.796 | 0.851 | 1e-156 | |
| Q11S94 | 337 | Biotin synthase OS=Cytoph | yes | no | 0.890 | 0.845 | 0.668 | 1e-112 | |
| O59778 | 363 | Biotin synthase OS=Schizo | yes | no | 0.859 | 0.757 | 0.628 | 1e-101 | |
| A5FLT1 | 363 | Biotin synthase OS=Flavob | yes | no | 0.921 | 0.812 | 0.577 | 6e-99 | |
| Q3M4U9 | 335 | Biotin synthase OS=Anabae | yes | no | 0.875 | 0.835 | 0.603 | 8e-99 | |
| Q8YVQ3 | 335 | Biotin synthase OS=Nostoc | yes | no | 0.875 | 0.835 | 0.6 | 4e-98 | |
| B2J914 | 335 | Biotin synthase OS=Nostoc | yes | no | 0.871 | 0.832 | 0.602 | 2e-97 | |
| A6GW77 | 362 | Biotin synthase OS=Flavob | yes | no | 0.865 | 0.765 | 0.582 | 4e-97 | |
| A0M7A9 | 363 | Biotin synthase OS=Gramel | yes | no | 0.859 | 0.757 | 0.590 | 2e-96 | |
| P32451 | 375 | Biotin synthase, mitochon | yes | no | 0.862 | 0.736 | 0.567 | 4e-96 |
| >sp|P54967|BIOB_ARATH Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 259/304 (85%), Positives = 281/304 (92%), Gaps = 3/304 (0%)
Query: 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR 75
+ EVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+LM+KDAV+ AA+KAKEAGSTR
Sbjct: 77 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTR 136
Query: 76 FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135
FCMGAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHN
Sbjct: 137 FCMGAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHN 196
Query: 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195
LDTSRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGIIGLGEAEEDR+GLLHTLATLP
Sbjct: 197 LDTSREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLP 256
Query: 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
+HPESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQ
Sbjct: 257 SHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQ 316
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEA 315
ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL PK PSF E + SE+E+C++
Sbjct: 317 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKV 373
Query: 316 VSHS 319
S S
Sbjct: 374 ASAS 377
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 6 |
| >sp|Q11S94|BIOB_CYTH3 Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/287 (66%), Positives = 233/287 (81%), Gaps = 2/287 (0%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 77
+EVQ CTLLSIKTGGC EDCSYCPQ++RY T VK +KLM V+ +A +AKE+GSTRFC
Sbjct: 39 QEVQVCTLLSIKTGGCPEDCSYCPQAARYHTDVKVEKLMDVKDVLNSALEAKESGSTRFC 98
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
MGAAWR+ K +F+++++ VK + MGMEVCCTLGML QA +LK AGL AYNHNLD
Sbjct: 99 MGAAWREVRDNK-DFDKVIDMVKGVSTMGMEVCCTLGMLTPEQADKLKDAGLYAYNHNLD 157
Query: 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197
TS E Y K+ITTR+YD+RLETL +VR A I+VCSGGIIG+GE+ DRVG+LHTLA + H
Sbjct: 158 TSAEHYDKVITTRTYDDRLETLDNVRNAKISVCSGGIIGMGESHGDRVGMLHTLANMVEH 217
Query: 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL 257
PESVP+NAL+ V+GTPL+DQ V +WEM+RMIATARI+MPKAMVRLSAGRVR + EQAL
Sbjct: 218 PESVPVNALVPVEGTPLEDQPRVSVWEMVRMIATARIIMPKAMVRLSAGRVRMNTEEQAL 277
Query: 258 CFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEA 304
CFLAGANSIF G+KLLTTPN + +AD+ MF+VL L P+ SF G+A
Sbjct: 278 CFLAGANSIFAGDKLLTTPNPEVNADKEMFQVLNLKPRQ-SFKNGDA 323
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|O59778|BIOB_SCHPO Biotin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bio2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/277 (62%), Positives = 216/277 (77%), Gaps = 2/277 (0%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 77
++VQQCTLLSIKTGGC+EDC YC QSSRY+TGVK KLM D V++ A+ AK GSTRFC
Sbjct: 54 KKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFC 113
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
MG+AWRD GR F ILE +K++R M MEVC TLGML + QA ELK AGLTAYNHNLD
Sbjct: 114 MGSAWRDLNGRNRTFKNILEIIKEVRSMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLD 173
Query: 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197
TSRE+YSKII+TR+YDERL T+ ++R+AG+ VCSGGI+GLGE + DRVGL+H+LAT+PTH
Sbjct: 174 TSREYYSKIISTRTYDERLNTIDNLRKAGLKVCSGGILGLGEKKHDRVGLIHSLATMPTH 233
Query: 198 PESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
PESVP N L+ + GTP+ D ++ + I +R IATARI MPK ++R +AGR S EQ
Sbjct: 234 PESVPFNLLVPIPGTPVGDAVKERLPIHPFLRSIATARICMPKTIIRFAAGRNTCSESEQ 293
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL 292
AL F+AGAN++FTGEK+LTTP +D+D +F GL
Sbjct: 294 ALAFMAGANAVFTGEKMLTTPAVSWDSDSQLFYNWGL 330
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A5FLT1|BIOB_FLAJ1 Biotin synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 171/296 (57%), Positives = 217/296 (73%), Gaps = 1/296 (0%)
Query: 20 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79
VQ TLLSIKTGGC EDC YCPQ++RY+TGV+G LMT V A +AK GS+R CMG
Sbjct: 42 VQVSTLLSIKTGGCPEDCGYCPQAARYNTGVEGNDLMTVSQVKAQALRAKSNGSSRVCMG 101
Query: 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139
AAWR+ + F+Q+LE V+ I + MEVCCTLGML ++QA L +AGL AYNHNLDTS
Sbjct: 102 AAWRN-VKDGEEFDQVLEMVRTINKLDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDTS 160
Query: 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 199
E+Y +I+TR +++RL+T+++VR+ + VCSGGIIG+GE+ EDR G+L L+TL PE
Sbjct: 161 EEYYKDVISTRGFEDRLQTIENVRKTNVTVCSGGIIGMGESIEDRAGMLVALSTLNPQPE 220
Query: 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 259
SVPINAL+AV+GTP++++KPVEIWEMIRM+AT RIVMP+ VRLSAGR S QA+CF
Sbjct: 221 SVPINALVAVEGTPMEEEKPVEIWEMIRMVATTRIVMPETQVRLSAGRTNMSREGQAMCF 280
Query: 260 LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEA 315
AGANSIF G+KLLTTPN D + D MF+ LG+ + P + EA Q A
Sbjct: 281 FAGANSIFAGDKLLTTPNPDVNEDMKMFETLGMVAQKPFIKIMQPKTVEAADSQFA 336
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (taxid: 376686) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q3M4U9|BIOB_ANAVT Biotin synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 218/285 (76%), Gaps = 5/285 (1%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 77
+++Q C L+SIKTGGC EDCSYC QSSRY T VK Q L+ K V++ AQ AK+ G +R C
Sbjct: 41 KQIQVCKLISIKTGGCPEDCSYCAQSSRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVC 100
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
MGAAWR+ + + F+++LE VKD+ DMG+EVCCTLGML QA +L+ AGL AYNHNLD
Sbjct: 101 MGAAWRE-VRDNSQFDRVLEMVKDVTDMGLEVCCTLGMLTTDQAKKLETAGLYAYNHNLD 159
Query: 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197
TS ++YS IITTR+Y +RL T+++VR+ + VCSGGI+GLGE+ +DRV +L TLATL H
Sbjct: 160 TSSDYYSTIITTRTYSDRLNTIENVRQTNVTVCSGGILGLGESIDDRVAMLQTLATLNPH 219
Query: 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL 257
PESVPIN L V+GTPL+DQ V +W+++RMIATARIVMP + VRLSAGR R S EQA
Sbjct: 220 PESVPINILSQVEGTPLEDQPDVPVWDVVRMIATARIVMPTSDVRLSAGRARLSQVEQAF 279
Query: 258 CFLAGANSIFTGE--KLL--TTPNNDFDADQLMFKVLGLTPKAPS 298
CF+AGANSIF+ + K+L TTP D+DADQ M +LGL + PS
Sbjct: 280 CFMAGANSIFSSDDNKMLTVTTPCPDYDADQEMLNLLGLEMRPPS 324
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|Q8YVQ3|BIOB_NOSS1 Biotin synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 217/285 (76%), Gaps = 5/285 (1%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 77
+++Q C L+SIKTG C EDCSYC QSSRY T VK Q L+ K V++ AQ AK+ G +R C
Sbjct: 41 KQIQVCKLISIKTGACPEDCSYCAQSSRYQTEVKPQALLDKQTVVEIAQNAKQKGVSRVC 100
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
MGAAWR+ + + F+++LE VKD+ DMG+EVCCTLGML QA +L+ AGL AYNHNLD
Sbjct: 101 MGAAWRE-VRDNSQFDRVLEMVKDVTDMGLEVCCTLGMLTSEQAKKLETAGLYAYNHNLD 159
Query: 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197
TS ++YS IITTR+Y +RL T+++VR+ + VCSGGI+GLGE+ +DRV +L TLATL H
Sbjct: 160 TSSDYYSTIITTRTYGDRLNTIENVRQTNVTVCSGGILGLGESIDDRVAMLQTLATLNPH 219
Query: 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL 257
PESVPIN L V+GTPL+DQ V +W+++RMIATARIVMP + VRLSAGR R S EQA
Sbjct: 220 PESVPINILSQVEGTPLEDQPDVPVWDVVRMIATARIVMPTSDVRLSAGRARLSQVEQAF 279
Query: 258 CFLAGANSIFTGE--KLL--TTPNNDFDADQLMFKVLGLTPKAPS 298
CF+AGANSIF+ + K+L TTP D+DADQ M +LGL + PS
Sbjct: 280 CFMAGANSIFSSDDNKMLTVTTPCPDYDADQEMLNLLGLEMRPPS 324
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|B2J914|BIOB_NOSP7 Biotin synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 216/284 (76%), Gaps = 5/284 (1%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
++Q C L+SIKTGGC EDCSYC QSSRY T VK + L+ K+ V+ AQKAKE G +R CM
Sbjct: 40 KIQVCKLISIKTGGCPEDCSYCAQSSRYKTEVKAEALLEKETVVNIAQKAKETGVSRICM 99
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAWR+ + + F ++LE VKDI MG+EVCCTLGML +QA +L++AGL AYNHNLDT
Sbjct: 100 GAAWRE-VRDNSQFEEVLEMVKDITAMGLEVCCTLGMLTANQARKLEEAGLYAYNHNLDT 158
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 198
S+E+YS IITTR+Y +RL T+++VR+ + VCSGGI+GLGE +DRVG+L TLA L HP
Sbjct: 159 SQEYYSTIITTRTYSDRLNTIENVRQTNVTVCSGGILGLGETVDDRVGMLQTLANLHPHP 218
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPIN L V GTPL++Q V IW+++RMIATARI+MP + VRLSAGR R S EQA C
Sbjct: 219 ESVPINILSQVPGTPLENQPDVPIWDIVRMIATARILMPASDVRLSAGRARLSQVEQAFC 278
Query: 259 FLAGANSIFTGE--KLL--TTPNNDFDADQLMFKVLGLTPKAPS 298
F+AGANSIF+ + K+L TTP D+D D+ M +LGL + PS
Sbjct: 279 FMAGANSIFSSDDNKMLTVTTPCPDYDTDREMLNLLGLGMRPPS 322
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A6GW77|BIOB_FLAPJ Biotin synthase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 162/278 (58%), Positives = 213/278 (76%), Gaps = 1/278 (0%)
Query: 20 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79
VQ TLLSIKTGGC EDC YCPQ++RY T ++G LM+ V A +AK +GS+R CMG
Sbjct: 41 VQVSTLLSIKTGGCPEDCGYCPQAARYHTDIEGNDLMSVQQVKAQALRAKSSGSSRVCMG 100
Query: 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139
AAWR+ + F+Q+LE V+ I + MEVCCTLGM+ ++QA L +AGL AYNHNLDTS
Sbjct: 101 AAWRN-VKDGPEFDQVLEMVRTINKLDMEVCCTLGMITENQAHRLAEAGLYAYNHNLDTS 159
Query: 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 199
E+Y ++I+TR +++R+ET+ +VR+ + VCSGGIIG+GE+ DR G+L L+TL PE
Sbjct: 160 EEYYKEVISTRGFEDRIETIANVRKTNVTVCSGGIIGMGESIGDRAGMLVALSTLSPQPE 219
Query: 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 259
SVPINAL+AV+GTP++++KPVEIWEMIRM+AT RI+MP+ VRLSAGR+ + QA+CF
Sbjct: 220 SVPINALVAVEGTPMEEEKPVEIWEMIRMVATTRIIMPETQVRLSAGRMNMTREGQAMCF 279
Query: 260 LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAP 297
AGANSIF G+KLLTTPN D + D MF++LGL P+ P
Sbjct: 280 FAGANSIFAGDKLLTTPNPDVNEDMKMFEMLGLNPQKP 317
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Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) (taxid: 402612) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|A0M7A9|BIOB_GRAFK Biotin synthase OS=Gramella forsetii (strain KT0803) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 163/276 (59%), Positives = 209/276 (75%), Gaps = 1/276 (0%)
Query: 20 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79
VQ TLLSIKTGGC EDC YCPQ++RY T ++G LM+ + V A +AK +GS+R CMG
Sbjct: 40 VQVSTLLSIKTGGCPEDCGYCPQAARYHTDLEGNDLMSVNQVKAQALRAKASGSSRVCMG 99
Query: 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139
AAWR+ + F+ +LE V+ I + MEVCCTLGML ++QA L +AGL AYNHNLD+S
Sbjct: 100 AAWRN-VKDGEEFDNVLEMVRSINKLDMEVCCTLGMLTENQAQRLAEAGLYAYNHNLDSS 158
Query: 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 199
E+Y ++I+TR Y +RL+T+ +VR+ + VCSGGIIG+GE+E DR G+L L+TL PE
Sbjct: 159 EEYYKEVISTRGYQDRLDTIGNVRKTNVTVCSGGIIGMGESEADRAGMLVALSTLNPQPE 218
Query: 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 259
SVPINAL+ V+GTP+++Q+PV IWEMIRM+AT RIVMP+ VRLSAGR + S QA+CF
Sbjct: 219 SVPINALVPVEGTPMEEQEPVPIWEMIRMVATTRIVMPETQVRLSAGRTQMSREGQAMCF 278
Query: 260 LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 295
AGANSIF G+KLLTTPN D D MFK+LGL P+
Sbjct: 279 FAGANSIFAGDKLLTTPNPDVSEDMEMFKMLGLNPQ 314
|
Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism. Gramella forsetii (strain KT0803) (taxid: 411154) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
| >sp|P32451|BIOB_YEAST Biotin synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIO2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 160/282 (56%), Positives = 218/282 (77%), Gaps = 6/282 (2%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ CTL++IK+GGCSEDC YC QSSR DTG+K +K++ D V++ A++AK GSTRFC+
Sbjct: 85 KVQLCTLMNIKSGGCSEDCKYCAQSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCL 144
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAWRD GRK+ +I E V + DMG+E C TLGM+++ QA +LK AGLTAYNHN+DT
Sbjct: 145 GAAWRDMKGRKSAMKRIQEMVTKVNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDT 204
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 198
SRE YSK+ITTR+YD+RL+T+K+V+E+GI C+GGI+GLGE+E+D +G ++TL+ + HP
Sbjct: 205 SREHYSKVITTRTYDDRLQTIKNVQESGIKACTGGILGLGESEDDHIGFIYTLSNMSPHP 264
Query: 199 ESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSM 252
ES+PIN L+A+KGTP+ ++ K ++ E++R IATARIVMPKA++RL+AGR
Sbjct: 265 ESLPINRLVAIKGTPMAEELADPKSKKLQFDEILRTIATARIVMPKAIIRLAAGRYTMKE 324
Query: 253 PEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 294
EQ +CF+AG NSIFTG+K+LTT N +D D+ M GL P
Sbjct: 325 TEQFVCFMAGCNSIFTGKKMLTTMCNGWDEDKAMLAKWGLQP 366
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 320 | ||||||
| 225433839 | 381 | PREDICTED: biotin synthase [Vitis vinife | 0.959 | 0.805 | 0.882 | 1e-161 | |
| 356538487 | 374 | PREDICTED: biotin synthase-like [Glycine | 0.95 | 0.812 | 0.879 | 1e-160 | |
| 224132680 | 391 | predicted protein [Populus trichocarpa] | 0.959 | 0.785 | 0.852 | 1e-159 | |
| 255637113 | 374 | unknown [Glycine max] | 0.921 | 0.788 | 0.894 | 1e-159 | |
| 255577757 | 375 | biotin synthase, putative [Ricinus commu | 0.953 | 0.813 | 0.868 | 1e-159 | |
| 114324485 | 375 | biotin synthase [Brassica rapa subsp. pe | 0.934 | 0.797 | 0.870 | 1e-157 | |
| 449446229 | 385 | PREDICTED: biotin synthase-like [Cucumis | 0.956 | 0.794 | 0.862 | 1e-156 | |
| 224095708 | 382 | predicted protein [Populus trichocarpa] | 0.95 | 0.795 | 0.866 | 1e-155 | |
| 297828031 | 377 | hypothetical protein ARALYDRAFT_903720 [ | 0.940 | 0.798 | 0.865 | 1e-155 | |
| 125562375 | 377 | hypothetical protein OsI_30080 [Oryza sa | 0.937 | 0.795 | 0.867 | 1e-155 |
| >gi|225433839|ref|XP_002263125.1| PREDICTED: biotin synthase [Vitis vinifera] gi|297743757|emb|CBI36640.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/307 (88%), Positives = 288/307 (93%)
Query: 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS 73
+ + EVQQCTLLS+KTGGCSEDCSYCPQSSRY TGVK Q+LM KDAV+QAAQKAKEAGS
Sbjct: 75 AHNFREVQQCTLLSVKTGGCSEDCSYCPQSSRYSTGVKAQRLMNKDAVLQAAQKAKEAGS 134
Query: 74 TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133
TRFCMGAAWRDT+GRKTNFNQILEYVK+IRDMGMEVCCTLGMLEK QAIELKKAGLTAYN
Sbjct: 135 TRFCMGAAWRDTVGRKTNFNQILEYVKEIRDMGMEVCCTLGMLEKQQAIELKKAGLTAYN 194
Query: 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 193
HNLDTSRE+Y II TRSYDERLETL+ VREAGINVCSGGIIGLGEAEEDRVGLLHTLAT
Sbjct: 195 HNLDTSREYYPNIIRTRSYDERLETLQLVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 254
Query: 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 253
LPTHPESVPINALLAVKGTPL+DQKPVEIWEM+RMIATARIVMPKAMVRLSAGRVRFS+P
Sbjct: 255 LPTHPESVPINALLAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSVP 314
Query: 254 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQ 313
EQALCFLAGANSIFTG+KLLTTPNNDFDADQ MFK+LGL PKAPSF E A SEAE+C+
Sbjct: 315 EQALCFLAGANSIFTGDKLLTTPNNDFDADQQMFKLLGLIPKAPSFDEDVAKTSEAENCE 374
Query: 314 EAVSHSG 320
+AVS SG
Sbjct: 375 QAVSGSG 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538487|ref|XP_003537735.1| PREDICTED: biotin synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 269/306 (87%), Positives = 289/306 (94%), Gaps = 2/306 (0%)
Query: 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS 73
+ + EVQQCTLLSIKTGGCSEDCSYCPQSS+YDTGVKGQ+LM K+AV+QAA+KAKEAGS
Sbjct: 71 AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAAKKAKEAGS 130
Query: 74 TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133
TRFCMGAAWRDT+GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYN
Sbjct: 131 TRFCMGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYN 190
Query: 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 193
HNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRVGLLHTL+T
Sbjct: 191 HNLDTSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLST 250
Query: 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 253
LPTHPESVPINAL+AVKGTPL+DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP
Sbjct: 251 LPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 310
Query: 254 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQ 313
EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL PKAPS HEGE +V+ E +
Sbjct: 311 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLHEGETSVT--EDYK 368
Query: 314 EAVSHS 319
EA S S
Sbjct: 369 EAASSS 374
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132680|ref|XP_002327854.1| predicted protein [Populus trichocarpa] gi|222837263|gb|EEE75642.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/319 (85%), Positives = 287/319 (89%), Gaps = 12/319 (3%)
Query: 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS 73
+ + EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVK Q+LMTK+ VM+AA++AKEAGS
Sbjct: 73 AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQRLMTKETVMEAAKRAKEAGS 132
Query: 74 TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133
TRFCMGAAWRDTIGRKTNFNQIL+YVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYN
Sbjct: 133 TRFCMGAAWRDTIGRKTNFNQILDYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYN 192
Query: 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 193
HNLDTSRE+Y IITTRSYDERLETL+HVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT
Sbjct: 193 HNLDTSREYYPNIITTRSYDERLETLQHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 252
Query: 194 LPTHPESVPINALLAVKGTPLQDQK------------PVEIWEMIRMIATARIVMPKAMV 241
LPTHPESVPINAL++VKGTPLQ+QK PVEIWEMIRMI TARIVMPKAMV
Sbjct: 253 LPTHPESVPINALVSVKGTPLQEQKVLLIPVSYKFSMPVEIWEMIRMIGTARIVMPKAMV 312
Query: 242 RLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHE 301
RLSAGRVRFSM EQALCFLAGANSIFTGEKLLTTPNND+DADQLMFKVLGL PKAPSF
Sbjct: 313 RLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDYDADQLMFKVLGLIPKAPSFSG 372
Query: 302 GEANVSEAESCQEAVSHSG 320
E EAE CQEAVS SG
Sbjct: 373 EEEKACEAEQCQEAVSSSG 391
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255637113|gb|ACU18888.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 264/295 (89%), Positives = 284/295 (96%)
Query: 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS 73
+ + EVQQCTLLSIKTGGCSEDCSYCPQSS+YDTGVKGQ+LM K+AV+QAA+KAKEAGS
Sbjct: 71 AHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGVKGQRLMNKEAVLQAAKKAKEAGS 130
Query: 74 TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133
TRFCMGAAWRDT+GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK QA+ELKKAGLTAYN
Sbjct: 131 TRFCMGAAWRDTLGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYN 190
Query: 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 193
HNLDTSRE+Y IITTR+YDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRVGLLHTL+T
Sbjct: 191 HNLDTSREYYPNIITTRTYDERLQTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLST 250
Query: 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 253
LPTHPESVPINAL+AVKGTPL+DQKPVEIWEMIRMIATARI+MPKAMVRLSAGRVRFSMP
Sbjct: 251 LPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSAGRVRFSMP 310
Query: 254 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSE 308
EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL PKAPS +EGE NV+E
Sbjct: 311 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLLPKAPSLNEGETNVTE 365
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577757|ref|XP_002529753.1| biotin synthase, putative [Ricinus communis] gi|223530751|gb|EEF32619.1| biotin synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/305 (86%), Positives = 286/305 (93%)
Query: 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR 75
+ EVQQCTLLSIKTGGCSEDCSYCPQSSRY+TG+K QKLMTKD V+QAA++AKEAGSTR
Sbjct: 71 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKAQKLMTKDDVLQAAKRAKEAGSTR 130
Query: 76 FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135
FCMGAAWRDTIGRKTNFNQIL+YVK+IRDMGMEVCCTLGMLEK QA ELKKAGLTAYNHN
Sbjct: 131 FCMGAAWRDTIGRKTNFNQILDYVKEIRDMGMEVCCTLGMLEKQQAAELKKAGLTAYNHN 190
Query: 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195
LDTSRE+Y II+TRSYDERL+TL+HVRE GINVCSGGIIGLGEAEEDRVGLLHTL+TLP
Sbjct: 191 LDTSREYYPNIISTRSYDERLKTLEHVREVGINVCSGGIIGLGEAEEDRVGLLHTLSTLP 250
Query: 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
HPESVPINAL+AVKGTPL+DQKPVEIWEMIRMIATARI+MPKAMVRLSAGRVRFS+ EQ
Sbjct: 251 MHPESVPINALIAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSAGRVRFSIAEQ 310
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEA 315
ALCFL+GANSIFTGEKLLTTPNNDFDADQLMFK+LGL PKAPSF E E E+E+CQEA
Sbjct: 311 ALCFLSGANSIFTGEKLLTTPNNDFDADQLMFKLLGLIPKAPSFPEDEERALESENCQEA 370
Query: 316 VSHSG 320
VS SG
Sbjct: 371 VSSSG 375
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|114324485|gb|ABI63585.1| biotin synthase [Brassica rapa subsp. pekinensis] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/302 (87%), Positives = 283/302 (93%), Gaps = 3/302 (0%)
Query: 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR 75
+ EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVK Q+LM+KDAV+ AA+KAKEAGSTR
Sbjct: 75 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQRLMSKDAVIVAAKKAKEAGSTR 134
Query: 76 FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135
FCMGAAWRDTIGRKTNFNQILEY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHN
Sbjct: 135 FCMGAAWRDTIGRKTNFNQILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHN 194
Query: 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195
LDTSRE+Y +ITTRSYDERLETL+HVR+AGINVCSGGIIGLGEAEEDRVGLLHTLATLP
Sbjct: 195 LDTSREYYPNVITTRSYDERLETLEHVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 254
Query: 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
+HPESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSMPEQ
Sbjct: 255 SHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMPEQ 314
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEA 315
ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL PK PSF E + SE+E+C++
Sbjct: 315 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKV 371
Query: 316 VS 317
S
Sbjct: 372 AS 373
|
Source: Brassica rapa subsp. pekinensis Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446229|ref|XP_004140874.1| PREDICTED: biotin synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/306 (86%), Positives = 283/306 (92%)
Query: 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS 73
+ + EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTG+K QKLMTKD V++AA+KAKEAGS
Sbjct: 80 THNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGLKAQKLMTKDVVLEAAKKAKEAGS 139
Query: 74 TRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133
TRFCMGAAWRDTIGRKTNFNQIL+YVK+IR+MGMEVCCTLGM+EK QAI+LKKAGLTAYN
Sbjct: 140 TRFCMGAAWRDTIGRKTNFNQILDYVKEIREMGMEVCCTLGMIEKQQAIDLKKAGLTAYN 199
Query: 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 193
HNLDTSRE+Y IITTRSYDERL+TL+ VR+AGINVCSGGIIGLGEAEEDRVGLLHTLAT
Sbjct: 200 HNLDTSREYYPNIITTRSYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLAT 259
Query: 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 253
LPTHPESVPINAL+AVKGTPLQDQKPVEIWEMIRMIATARI MPKAMVRLSAGRV+FS+P
Sbjct: 260 LPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVKFSVP 319
Query: 254 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQ 313
EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK+LGL PKAPSF E E ES Q
Sbjct: 320 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKMLGLIPKAPSFTEDAEKAPEEESLQ 379
Query: 314 EAVSHS 319
EA S
Sbjct: 380 EAALSS 385
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095708|ref|XP_002310445.1| predicted protein [Populus trichocarpa] gi|222853348|gb|EEE90895.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 265/306 (86%), Positives = 284/306 (92%), Gaps = 2/306 (0%)
Query: 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR 75
+ EVQQCTLLSIKTGGCSEDCSYCPQSSRY+TG+K Q+LMTK+ V++AA++AKEAGSTR
Sbjct: 75 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYNTGLKPQRLMTKETVIEAAKRAKEAGSTR 134
Query: 76 FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135
FCMGAAWRDTIGRKTNFNQIL+YVK+IR MGMEVCCTLGMLEK QA ELKKAGLTAYNHN
Sbjct: 135 FCMGAAWRDTIGRKTNFNQILDYVKEIRGMGMEVCCTLGMLEKQQAAELKKAGLTAYNHN 194
Query: 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195
LDTSRE+Y IITTRSYDERLETL+HVREAGI+VCSGGIIGLGEAEEDRVGLLHTLATLP
Sbjct: 195 LDTSREYYPNIITTRSYDERLETLEHVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLP 254
Query: 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
THPESVPINAL+AVKGTPLQ+QKPVEIWEMIRMI +ARIVMPKAMVRLSAGRV FSM EQ
Sbjct: 255 THPESVPINALVAVKGTPLQEQKPVEIWEMIRMIGSARIVMPKAMVRLSAGRVSFSMAEQ 314
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSF--HEGEANVSEAESCQ 313
ALCFLAGANSIFTGEKLLTTPNND+DADQLMFKVLGL PKAPSF E +A EAE CQ
Sbjct: 315 ALCFLAGANSIFTGEKLLTTPNNDYDADQLMFKVLGLIPKAPSFSADEEKACACEAERCQ 374
Query: 314 EAVSHS 319
EAVS S
Sbjct: 375 EAVSSS 380
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828031|ref|XP_002881898.1| hypothetical protein ARALYDRAFT_903720 [Arabidopsis lyrata subsp. lyrata] gi|297327737|gb|EFH58157.1| hypothetical protein ARALYDRAFT_903720 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/304 (86%), Positives = 280/304 (92%), Gaps = 3/304 (0%)
Query: 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR 75
+ EVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+LM+KDAV+ AA+KAKEAGSTR
Sbjct: 76 NFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTR 135
Query: 76 FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135
FCMGAAWRDTIGRKTNFNQILEY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHN
Sbjct: 136 FCMGAAWRDTIGRKTNFNQILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHN 195
Query: 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195
LDTSRE+Y +ITTRSYD+RLETL+HVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP
Sbjct: 196 LDTSREYYPNVITTRSYDDRLETLEHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 255
Query: 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
HPESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQ
Sbjct: 256 MHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMAEQ 315
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEA 315
ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL PK PSF E + SEAE+C +
Sbjct: 316 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSE---DNSEAENCDKV 372
Query: 316 VSHS 319
S S
Sbjct: 373 ASAS 376
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125562375|gb|EAZ07823.1| hypothetical protein OsI_30080 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/301 (86%), Positives = 279/301 (92%), Gaps = 1/301 (0%)
Query: 17 MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRF 76
EVQQCTLLSIKTGGCSEDCSYCPQSSRY TG+K QKLM KDAV++AA+KAKEAGSTRF
Sbjct: 77 FREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGLKAQKLMNKDAVLEAAKKAKEAGSTRF 136
Query: 77 CMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136
CMGAAWR+TIGRKTNFNQILEYVKDIR MGMEVCCTLGMLEK QA ELKKAGLTAYNHNL
Sbjct: 137 CMGAAWRETIGRKTNFNQILEYVKDIRGMGMEVCCTLGMLEKQQAEELKKAGLTAYNHNL 196
Query: 137 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT 196
DTSRE+Y II+TRSYD+RL+TL+HVREAGI++CSGGIIGLGEAEEDRVGLLHTLATLP
Sbjct: 197 DTSREYYPNIISTRSYDDRLQTLEHVREAGISICSGGIIGLGEAEEDRVGLLHTLATLPA 256
Query: 197 HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA 256
HPESVPINAL+AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA
Sbjct: 257 HPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA 316
Query: 257 LCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAV 316
LCFLAGANSIF GEKLLTT NNDFDADQ MFK+LGL PKAPSF + EA ++ E C+EA
Sbjct: 317 LCFLAGANSIFAGEKLLTTANNDFDADQAMFKILGLIPKAPSFGD-EAPAADTERCEEAA 375
Query: 317 S 317
S
Sbjct: 376 S 376
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 320 | ||||||
| TAIR|locus:2005497 | 378 | BIO2 "BIOTIN AUXOTROPH 2" [Ara | 0.931 | 0.788 | 0.823 | 1.2e-131 | |
| ASPGD|ASPL0000006186 | 393 | bioB [Emericella nidulans (tax | 0.928 | 0.755 | 0.575 | 5.1e-90 | |
| POMBASE|SPCC1235.02 | 363 | bio2 "biotin synthase" [Schizo | 0.906 | 0.798 | 0.576 | 2.1e-84 | |
| SGD|S000003518 | 375 | BIO2 "Biotin synthase" [Saccha | 0.862 | 0.736 | 0.553 | 2.2e-82 | |
| UNIPROTKB|Q9KSZ4 | 350 | bioB "Biotin synthase" [Vibrio | 0.846 | 0.774 | 0.567 | 1.8e-78 | |
| TIGR_CMR|VC_1112 | 350 | VC_1112 "biotin synthase" [Vib | 0.846 | 0.774 | 0.567 | 1.8e-78 | |
| UNIPROTKB|P12996 | 346 | bioB "biotin synthase monomer" | 0.884 | 0.817 | 0.550 | 1e-77 | |
| TIGR_CMR|SPO_3338 | 318 | SPO_3338 "biotin synthase" [Ru | 0.853 | 0.858 | 0.538 | 3.5e-75 | |
| TIGR_CMR|CBU_1007 | 321 | CBU_1007 "biotin synthase" [Co | 0.878 | 0.875 | 0.508 | 3.6e-73 | |
| TIGR_CMR|NSE_0612 | 325 | NSE_0612 "biotin synthase" [Ne | 0.85 | 0.836 | 0.507 | 4.6e-73 |
| TAIR|locus:2005497 BIO2 "BIOTIN AUXOTROPH 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 248/301 (82%), Positives = 268/301 (89%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
EVQQCTLLSIKTGGCSEDCSYCPQSSRY TGVK Q+LM+KDAV+ AA+KAKEAGSTRFCM
Sbjct: 80 EVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCM 139
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAWRDTIGRKTNF+QILEY+K+IR MGMEVCCTLGM+EK QA+ELKKAGLTAYNHNLDT
Sbjct: 140 GAAWRDTIGRKTNFSQILEYIKEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDT 199
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXX 198
SRE+Y +ITTRSYD+RLETL HVR+AGINVCSGGIIGLGEAEEDR+G
Sbjct: 200 SREYYPNVITTRSYDDRLETLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHP 259
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPINALLAVKGTPL+DQKPVEIWEMIRMI TARIVMPKAMVRLSAGRVRFSM EQALC
Sbjct: 260 ESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALC 319
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSH 318
FLAGANSIFTGEKLLTTPNNDFDADQLMFK LGL PK PSF E + SE+E+C++ S
Sbjct: 320 FLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDD---SESENCEKVASA 376
Query: 319 S 319
S
Sbjct: 377 S 377
|
|
| ASPGD|ASPL0000006186 bioB [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 172/299 (57%), Positives = 218/299 (72%)
Query: 20 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79
+Q CTL++IKTGGCSEDCSYC QSSRY TG+K K+ D V++ A+ AK GSTRFCMG
Sbjct: 83 IQMCTLMNIKTGGCSEDCSYCAQSSRYSTGLKATKMSPVDDVLEKARIAKANGSTRFCMG 142
Query: 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139
AAWRD GRKT+ + + V +R+MGMEVC TLGM++ QA ELK AGLTAYNHNLDTS
Sbjct: 143 AAWRDMRGRKTSLKNVKQMVSGVREMGMEVCVTLGMIDADQAKELKDAGLTAYNHNLDTS 202
Query: 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXE 199
REFY IITTRSYDERL+TL HVR+AGINVCSGGI+GLGEA+ DR+G E
Sbjct: 203 REFYPTIITTRSYDERLKTLSHVRDAGINVCSGGILGLGEADSDRIGLIHTVSSLPSHPE 262
Query: 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 259
S P+NAL+ +KGTPL D+K + +++R +ATARIV+P +VRL+AGR+ + +Q CF
Sbjct: 263 SFPVNALVPIKGTPLGDRKMISFDKLLRTVATARIVLPATIVRLAAGRISLTEEQQVACF 322
Query: 260 LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSH 318
+AGAN++FTGEK+LTT N +D D+ MF G P SF E E N + + ++V+H
Sbjct: 323 MAGANAVFTGEKMLTTDCNGWDEDRAMFDRWGFYPMR-SF-EKETNAATPQQHVDSVAH 379
|
|
| POMBASE|SPCC1235.02 bio2 "biotin synthase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 169/293 (57%), Positives = 209/293 (71%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 77
++VQQCTLLSIKTGGC+EDC YC QSSRY+TGVK KLM D V++ A+ AK GSTRFC
Sbjct: 54 KKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFC 113
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
MG+AWRD GR F ILE +K++R M MEVC TLGML + QA ELK AGLTAYNHNLD
Sbjct: 114 MGSAWRDLNGRNRTFKNILEIIKEVRSMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLD 173
Query: 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXX 197
TSRE+YSKII+TR+YDERL T+ ++R+AG+ VCSGGI+GLGE + DRVG
Sbjct: 174 TSREYYSKIISTRTYDERLNTIDNLRKAGLKVCSGGILGLGEKKHDRVGLIHSLATMPTH 233
Query: 198 XESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
ESVP N L+ + GTP+ D ++ + I +R IATARI MPK ++R +AGR S EQ
Sbjct: 234 PESVPFNLLVPIPGTPVGDAVKERLPIHPFLRSIATARICMPKTIIRFAAGRNTCSESEQ 293
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSE 308
AL F+AGAN++FTGEK+LTTP +D+D +F GL SF G + E
Sbjct: 294 ALAFMAGANAVFTGEKMLTTPAVSWDSDSQLFYNWGLEGMQ-SFEYGTSTEGE 345
|
|
| SGD|S000003518 BIO2 "Biotin synthase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 156/282 (55%), Positives = 210/282 (74%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ CTL++IK+GGCSEDC YC QSSR DTG+K +K++ D V++ A++AK GSTRFC+
Sbjct: 85 KVQLCTLMNIKSGGCSEDCKYCAQSSRNDTGLKAEKMVKVDEVIKEAEEAKRNGSTRFCL 144
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAWRD GRK+ +I E V + DMG+E C TLGM+++ QA +LK AGLTAYNHN+DT
Sbjct: 145 GAAWRDMKGRKSAMKRIQEMVTKVNDMGLETCVTLGMVDQDQAKQLKDAGLTAYNHNIDT 204
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXX 198
SRE YSK+ITTR+YD+RL+T+K+V+E+GI C+GGI+GLGE+E+D +G
Sbjct: 205 SREHYSKVITTRTYDDRLQTIKNVQESGIKACTGGILGLGESEDDHIGFIYTLSNMSPHP 264
Query: 199 ESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSM 252
ES+PIN L+A+KGTP+ ++ K ++ E++R IATARIVMPKA++RL+AGR
Sbjct: 265 ESLPINRLVAIKGTPMAEELADPKSKKLQFDEILRTIATARIVMPKAIIRLAAGRYTMKE 324
Query: 253 PEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 294
EQ +CF+AG NSIFTG+K+LTT N +D D+ M GL P
Sbjct: 325 TEQFVCFMAGCNSIFTGKKMLTTMCNGWDEDKAMLAKWGLQP 366
|
|
| UNIPROTKB|Q9KSZ4 bioB "Biotin synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 155/273 (56%), Positives = 196/273 (71%)
Query: 20 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79
VQ TLLSIKTG C EDC YCPQS+ Y T V ++LM + V+ AAQKAK +GSTRFCMG
Sbjct: 40 VQVSTLLSIKTGACPEDCKYCPQSAHYRTDVDKERLMEVERVLDAAQKAKNSGSTRFCMG 99
Query: 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139
AAW++ ++ + + E ++ ++DMG+E C TLGML QA +L +AGL YNHNLDTS
Sbjct: 100 AAWKNP--KERDMPLLKEMIRGVKDMGLETCMTLGMLTPDQAQQLAQAGLDYYNHNLDTS 157
Query: 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXE 199
EFY IITTR+Y +RL+TL HVR+AG+ +CSGGIIG+GE+ DR G E
Sbjct: 158 PEFYGNIITTRTYQDRLDTLSHVRDAGMKICSGGIIGMGESTNDRAGLLVELANLPTHPE 217
Query: 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 259
SVPIN L+ VKGTPL+ VE ++ +R+IA ARI+MPK+ VRLSAGR + + QALCF
Sbjct: 218 SVPINMLVKVKGTPLEQVDDVEPFDFVRLIAVARIMMPKSAVRLSAGREKMNEQMQALCF 277
Query: 260 LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL 292
+AGANSIF G KLLTTPN D+D L+FK LG+
Sbjct: 278 MAGANSIFYGCKLLTTPNPAEDSDMLLFKKLGI 310
|
|
| TIGR_CMR|VC_1112 VC_1112 "biotin synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 155/273 (56%), Positives = 196/273 (71%)
Query: 20 VQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79
VQ TLLSIKTG C EDC YCPQS+ Y T V ++LM + V+ AAQKAK +GSTRFCMG
Sbjct: 40 VQVSTLLSIKTGACPEDCKYCPQSAHYRTDVDKERLMEVERVLDAAQKAKNSGSTRFCMG 99
Query: 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139
AAW++ ++ + + E ++ ++DMG+E C TLGML QA +L +AGL YNHNLDTS
Sbjct: 100 AAWKNP--KERDMPLLKEMIRGVKDMGLETCMTLGMLTPDQAQQLAQAGLDYYNHNLDTS 157
Query: 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXE 199
EFY IITTR+Y +RL+TL HVR+AG+ +CSGGIIG+GE+ DR G E
Sbjct: 158 PEFYGNIITTRTYQDRLDTLSHVRDAGMKICSGGIIGMGESTNDRAGLLVELANLPTHPE 217
Query: 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF 259
SVPIN L+ VKGTPL+ VE ++ +R+IA ARI+MPK+ VRLSAGR + + QALCF
Sbjct: 218 SVPINMLVKVKGTPLEQVDDVEPFDFVRLIAVARIMMPKSAVRLSAGREKMNEQMQALCF 277
Query: 260 LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL 292
+AGANSIF G KLLTTPN D+D L+FK LG+
Sbjct: 278 MAGANSIFYGCKLLTTPNPAEDSDMLLFKKLGI 310
|
|
| UNIPROTKB|P12996 bioB "biotin synthase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 157/285 (55%), Positives = 199/285 (69%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ TLLSIKTG C EDC YCPQSSRY TG++ ++LM + V+++A+KAK AGSTRFCM
Sbjct: 39 QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCM 98
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAW++ R + + + V+ ++ MG+E C TLG L + QA L AGL YNHNLDT
Sbjct: 99 GAAWKNPHERDMPYLE--QMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT 156
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXX 198
S EFY IITTR+Y ERL+TL+ VR+AGI VCSGGI+GLGE +DR G
Sbjct: 157 SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPP 216
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPIN L+ VKGTPL D V+ ++ IR IA ARI+MP + VRLSAGR + + QA+C
Sbjct: 217 ESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC 276
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGE 303
F+AGANSIF G KLLTTPN + D D +F+ LGL P+ + G+
Sbjct: 277 FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGD 321
|
|
| TIGR_CMR|SPO_3338 SPO_3338 "biotin synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 148/275 (53%), Positives = 194/275 (70%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRY-DTGVKGQKLMTKDAVMQAAQKAKEAGSTRF 76
+++Q+ +LLSIKTGGC EDC+YCPQS+ + + + +KLM D V+ A++A+ AG+ RF
Sbjct: 40 DDIQKASLLSIKTGGCPEDCAYCPQSAHHREVELTREKLMNPDHVVSLARRAQRAGAERF 99
Query: 77 CMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136
CMGAAWR + F+ +L V+ +R +GME C TLGML HQA L +AGLTAYNHNL
Sbjct: 100 CMGAAWRQ-VRDGAEFDNVLAMVRGVRALGMEACVTLGMLRPHQAQRLAEAGLTAYNHNL 158
Query: 137 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXX 196
DTS EFY +II TR+Y +RL+TL + R+AGI +C GGIIG+GE+ DR
Sbjct: 159 DTSPEFYGQIIGTRTYQDRLDTLAYCRDAGIELCCGGIIGMGESLRDRAAMLQVLANFAP 218
Query: 197 XXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA 256
ESVPINAL+ ++GTPL ++ V I++++RM+ATARI+MP VRLSAGR FS EQA
Sbjct: 219 HPESVPINALIPIEGTPLAHRERVGIFDLVRMVATARIIMPLTRVRLSAGRSDFSAAEQA 278
Query: 257 LCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 291
LCFLAGANS+F G+ LLT PN AD +F LG
Sbjct: 279 LCFLAGANSVFYGDVLLTAPNAGTGADAELFAALG 313
|
|
| TIGR_CMR|CBU_1007 CBU_1007 "biotin synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 145/285 (50%), Positives = 196/285 (68%)
Query: 17 MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRF 76
+ +++ CTL SIKTG C EDC+YCPQS Y T V+ +KL+ +AV++ A+ AKE G+ RF
Sbjct: 36 VRDMELCTLSSIKTGTCPEDCAYCPQSGHYKTDVEREKLINLEAVLEQAKVAKENGARRF 95
Query: 77 CMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136
CMGAAWR K ++LE +K ++ +G+E C TLGML++ QA++LK+AGL YNHNL
Sbjct: 96 CMGAAWRSP--PKRELPKVLEMIKSVKALGLETCVTLGMLDQEQALQLKEAGLDFYNHNL 153
Query: 137 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXX 196
DTS EFY KIITTR+Y +R+ETLK+VR AGINVC GGI+G+GE+ DR+
Sbjct: 154 DTSPEFYKKIITTRTYQDRMETLKNVRNAGINVCCGGILGMGESRADRIQLLLELYQLPE 213
Query: 197 XXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA 256
S+PIN L+ +KGTPL++ K ++ +E I+ IA R++ P +++RLSAGR S QA
Sbjct: 214 PPTSIPINQLIPIKGTPLENTKAIDPFEFIKTIAITRLLFPTSVIRLSAGREAMSDELQA 273
Query: 257 LCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHE 301
CF+AGANSIF G+KLLT N + D + K LGL K P E
Sbjct: 274 WCFMAGANSIFYGDKLLTAKNPGQNRDVNLLKKLGL--KVPVLTE 316
|
|
| TIGR_CMR|NSE_0612 NSE_0612 "biotin synthase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
Identities = 139/274 (50%), Positives = 196/274 (71%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
EVQ LLS+KTGGC E+CSYCPQS+ YDTG++ + +M + V++AA++A E G+TRFC+
Sbjct: 37 EVQLAMLLSVKTGGCPENCSYCPQSAHYDTGLRKEPVMHVEKVLEAAKRAVELGATRFCI 96
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAWR G+ + + E + I+ +G+E C +LG+L QA+ LK AGL YNHN+DT
Sbjct: 97 GAAWRGPRGKDLDI--VCEMISRIKKLGLETCASLGLLSYEQAVSLKAAGLDFYNHNIDT 154
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXX 198
S+E+YSKIITTR + +R+ETL++V +AG+ +CSGGI+G+GE+ EDR+
Sbjct: 155 SQEYYSKIITTRRFSDRIETLENVAKAGLKICSGGILGMGESNEDRIKMLVELSHLSFPP 214
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ES+PIN L+ + GTPL ++ V+ + +R+IA ARI+ PK+ VRLSAGR S Q LC
Sbjct: 215 ESIPINKLIPIPGTPLAEKNAVDPLDFVRIIALARIMFPKSYVRLSAGRESMSDELQTLC 274
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGL 292
F+AGANSIF GEKLLT+ N+D ++D+ + LGL
Sbjct: 275 FIAGANSIFYGEKLLTSANSDPESDEKLLLKLGL 308
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6FAP9 | BIOB_ACIAD | 2, ., 8, ., 1, ., 6 | 0.5567 | 0.875 | 0.8510 | yes | no |
| A5F2H3 | BIOB_VIBC3 | 2, ., 8, ., 1, ., 6 | 0.5985 | 0.85 | 0.7771 | yes | no |
| A9MTI8 | BIOB_SALPB | 2, ., 8, ., 1, ., 6 | 0.6007 | 0.8625 | 0.7976 | yes | no |
| A3M4U4 | BIOB_ACIBT | 2, ., 8, ., 1, ., 6 | 0.5719 | 0.8625 | 0.8389 | yes | no |
| B0VR41 | BIOB_ACIBS | 2, ., 8, ., 1, ., 6 | 0.5683 | 0.8625 | 0.8389 | yes | no |
| Q87QN6 | BIOB_VIBPA | 2, ., 8, ., 1, ., 6 | 0.5912 | 0.85 | 0.7771 | yes | no |
| A1JS69 | BIOB_YERE8 | 2, ., 8, ., 1, ., 6 | 0.5859 | 0.8843 | 0.8085 | yes | no |
| P32451 | BIOB_YEAST | 2, ., 8, ., 1, ., 6 | 0.5673 | 0.8625 | 0.736 | yes | no |
| B2K8T0 | BIOB_YERPB | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| Q11S94 | BIOB_CYTH3 | 2, ., 8, ., 1, ., 6 | 0.6689 | 0.8906 | 0.8456 | yes | no |
| B1JSS4 | BIOB_YERPY | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| B7H3S4 | BIOB_ACIB3 | 2, ., 8, ., 1, ., 6 | 0.5719 | 0.8625 | 0.8389 | yes | no |
| B2J914 | BIOB_NOSP7 | 2, ., 8, ., 1, ., 6 | 0.6021 | 0.8718 | 0.8328 | yes | no |
| P12678 | BIOB_SALTY | 2, ., 8, ., 1, ., 6 | 0.6007 | 0.8625 | 0.7976 | yes | no |
| B2TVF5 | BIOB_SHIB3 | 2, ., 8, ., 1, ., 6 | 0.5789 | 0.8843 | 0.8179 | yes | no |
| Q255G8 | BIOB_CHLFF | 2, ., 8, ., 1, ., 6 | 0.5510 | 0.9125 | 0.8821 | yes | no |
| Q3M4U9 | BIOB_ANAVT | 2, ., 8, ., 1, ., 6 | 0.6035 | 0.875 | 0.8358 | yes | no |
| A9R3C8 | BIOB_YERPG | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| B5R761 | BIOB_SALG2 | 2, ., 8, ., 1, ., 6 | 0.5971 | 0.8625 | 0.7976 | yes | no |
| Q8PDF0 | BIOB_XANCP | 2, ., 8, ., 1, ., 6 | 0.5522 | 0.9375 | 0.8720 | yes | no |
| Q66D67 | BIOB_YERPS | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| B7I4I4 | BIOB_ACIB5 | 2, ., 8, ., 1, ., 6 | 0.5719 | 0.8625 | 0.8389 | yes | no |
| A8AJ12 | BIOB_CITK8 | 2, ., 8, ., 1, ., 6 | 0.5874 | 0.8875 | 0.8208 | yes | no |
| Q1CFQ3 | BIOB_YERPN | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| A6GW77 | BIOB_FLAPJ | 2, ., 8, ., 1, ., 6 | 0.5827 | 0.8656 | 0.7651 | yes | no |
| Q2NB65 | BIOB_ERYLH | 2, ., 8, ., 1, ., 6 | 0.5719 | 0.8906 | 0.8357 | yes | no |
| B2UDA1 | BIOB_RALPJ | 2, ., 8, ., 1, ., 6 | 0.5860 | 0.8468 | 0.7548 | yes | no |
| Q9Z6L5 | BIOB_CHLPN | 2, ., 8, ., 1, ., 6 | 0.5800 | 0.8718 | 0.8429 | yes | no |
| Q0TJS3 | BIOB_ECOL5 | 2, ., 8, ., 1, ., 6 | 0.5824 | 0.8843 | 0.8179 | yes | no |
| B2HYX9 | BIOB_ACIBC | 2, ., 8, ., 1, ., 6 | 0.5719 | 0.8625 | 0.8389 | yes | no |
| Q324B7 | BIOB_SHIBS | 2, ., 8, ., 1, ., 6 | 0.5789 | 0.8843 | 0.8179 | yes | no |
| A0M7A9 | BIOB_GRAFK | 2, ., 8, ., 1, ., 6 | 0.5905 | 0.8593 | 0.7575 | yes | no |
| A4TNQ6 | BIOB_YERPP | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| P54967 | BIOB_ARATH | 2, ., 8, ., 1, ., 6 | 0.8519 | 0.9406 | 0.7962 | yes | no |
| Q57RG3 | BIOB_SALCH | 2, ., 8, ., 1, ., 6 | 0.6007 | 0.8625 | 0.7976 | yes | no |
| Q9KSZ4 | BIOB_VIBCH | 2, ., 8, ., 1, ., 6 | 0.5985 | 0.85 | 0.7771 | yes | no |
| B0VCA8 | BIOB_ACIBY | 2, ., 8, ., 1, ., 6 | 0.5719 | 0.8625 | 0.8389 | yes | no |
| A5FLT1 | BIOB_FLAJ1 | 2, ., 8, ., 1, ., 6 | 0.5777 | 0.9218 | 0.8126 | yes | no |
| B4SZJ7 | BIOB_SALNS | 2, ., 8, ., 1, ., 6 | 0.6007 | 0.8625 | 0.7976 | yes | no |
| O59778 | BIOB_SCHPO | 2, ., 8, ., 1, ., 6 | 0.6281 | 0.8593 | 0.7575 | yes | no |
| Q1C947 | BIOB_YERPA | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| Q8YVQ3 | BIOB_NOSS1 | 2, ., 8, ., 1, ., 6 | 0.6 | 0.875 | 0.8358 | yes | no |
| C0PWY2 | BIOB_SALPC | 2, ., 8, ., 1, ., 6 | 0.6007 | 0.8625 | 0.7976 | yes | no |
| Q7CH65 | BIOB_YERPE | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| A7FKM9 | BIOB_YERP3 | 2, ., 8, ., 1, ., 6 | 0.5773 | 0.9031 | 0.8376 | yes | no |
| B0RMR2 | BIOB_XANCB | 2, ., 8, ., 1, ., 6 | 0.5522 | 0.9375 | 0.8720 | yes | no |
| Q8Y2R9 | BIOB_RALSO | 2, ., 8, ., 1, ., 6 | 0.5860 | 0.8468 | 0.7527 | yes | no |
| Q4UZN8 | BIOB_XANC8 | 2, ., 8, ., 1, ., 6 | 0.5522 | 0.9375 | 0.8720 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.6 | 0.991 |
| 3rd Layer | 2.8.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 320 | |||
| PLN02389 | 379 | PLN02389, PLN02389, biotin synthase | 0.0 | |
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthase | 1e-143 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes | 1e-137 | |
| PRK15108 | 345 | PRK15108, PRK15108, biotin synthase; Provisional | 1e-131 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 3e-88 | |
| PRK08508 | 279 | PRK08508, PRK08508, biotin synthase; Provisional | 2e-63 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family | 3e-38 | |
| smart00876 | 94 | smart00876, BATS, Biotin and Thiamin Synthesis ass | 8e-35 | |
| pfam06968 | 93 | pfam06968, BATS, Biotin and Thiamin Synthesis asso | 8e-35 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 2e-21 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 8e-16 | |
| TIGR03910 | 347 | TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis | 4e-13 | |
| TIGR03957 | 317 | TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydrometha | 4e-12 | |
| TIGR03550 | 322 | TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-d | 2e-11 | |
| PRK07094 | 323 | PRK07094, PRK07094, biotin synthase; Provisional | 4e-11 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH a | 3e-10 | |
| PRK06245 | 336 | PRK06245, cofG, FO synthase subunit 1; Reviewed | 4e-08 | |
| COG1242 | 312 | COG1242, COG1242, Predicted Fe-S oxidoreductase [G | 5e-06 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metaboli | 2e-05 | |
| TIGR02668 | 302 | TIGR02668, moaA_archaeal, probable molybdenum cofa | 6e-05 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 0.001 | |
| TIGR03551 | 343 | TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-d | 0.001 | |
| TIGR01212 | 302 | TIGR01212, TIGR01212, radical SAM protein, TIGR012 | 0.001 | |
| PRK09234 | 843 | PRK09234, fbiC, FO synthase; Reviewed | 0.001 | |
| COG2516 | 339 | COG2516, COG2516, Biotin synthase-related enzyme [ | 0.002 | |
| PRK05481 | 289 | PRK05481, PRK05481, lipoyl synthase; Provisional | 0.003 |
| >gnl|CDD|215219 PLN02389, PLN02389, biotin synthase | Back alignment and domain information |
|---|
Score = 617 bits (1593), Expect = 0.0
Identities = 261/301 (86%), Positives = 280/301 (93%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVK QKLM+KD V++AA++AKEAGSTRFCM
Sbjct: 79 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCM 138
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAWRDT+GRKTNFNQILEYVK+IR MGMEVCCTLGMLEK QA +LK+AGLTAYNHNLDT
Sbjct: 139 GAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDT 198
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 198
SRE+Y +ITTRSYD+RLETL+ VREAGI+VCSGGIIGLGEAEEDRVGLLHTLATLP HP
Sbjct: 199 SREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHP 258
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPINAL+AVKGTPL+DQKPVEIWEM+RMIATARIVMPKAMVRLSAGRVRFSM EQALC
Sbjct: 259 ESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALC 318
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSH 318
FLAGANSIFTG+KLLTTPNNDFDADQ MFK LGL PK PSF E E SEAE C+EAVS
Sbjct: 319 FLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPPSFGEDEERASEAERCEEAVSS 378
Query: 319 S 319
S
Sbjct: 379 S 379
|
Length = 379 |
| >gnl|CDD|232973 TIGR00433, bioB, biotin synthase | Back alignment and domain information |
|---|
Score = 405 bits (1044), Expect = e-143
Identities = 134/276 (48%), Positives = 187/276 (67%), Gaps = 6/276 (2%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+V C++++ K+GGC EDC YC QS+ Y TG++ L++ + V++AA+KAK AG++RFCM
Sbjct: 26 KVDLCSIINAKSGGCPEDCKYCAQSAHYKTGIEKYPLLSVEEVLEAAKKAKAAGASRFCM 85
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
+ R R F ++LE +++I++ G+EVC +LG+L + QA LK AG+ YNHNL+
Sbjct: 86 VTSGRGPSDR--EFEKVLEAIREIKEETGLEVCASLGLLSEEQAQRLKDAGVDRYNHNLE 143
Query: 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197
TS +Y I TT +YD+RLETLK R+AG++VCSGGIIG+GE EDR+ L LA L
Sbjct: 144 TSPSYYPNICTTHTYDDRLETLKRARKAGLSVCSGGIIGMGETMEDRIELAFALAELD-- 201
Query: 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL 257
+SVPIN L+ + GTPL+D P++ E +R IA R +MP A +RL+ GR QAL
Sbjct: 202 VDSVPINFLVPIPGTPLEDAPPLDPEECLRTIALFRFIMPDAEIRLAGGRELMLRELQAL 261
Query: 258 CFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLT 293
CFLAGANSIFTG+ LTT + + D M + LGL
Sbjct: 262 CFLAGANSIFTGD-YLTTAGREAEEDLEMLEDLGLE 296
|
Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 296 |
| >gnl|CDD|223576 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 390 bits (1005), Expect = e-137
Identities = 160/290 (55%), Positives = 207/290 (71%), Gaps = 5/290 (1%)
Query: 17 MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRF 76
EVQ TL+SIKTG C EDC+YC QS+RY TGVK +KLM + +++AA+KAK AG+TRF
Sbjct: 45 GNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRF 104
Query: 77 CMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135
CMGAA R GR +++E +K +++ +G+EVC +LGML + QA +L AG+ YNHN
Sbjct: 105 CMGAAGRGP-GRD--MEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHN 161
Query: 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195
L+TS EFY IITTR+Y++RL TL++VREAGI VCSGGI+GLGE EDR LL LA LP
Sbjct: 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLP 221
Query: 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255
T P+SVPIN L + GTPL++ KP++ +E ++ IA ARI+MPK+M+RLSAGR Q
Sbjct: 222 T-PDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQ 280
Query: 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEAN 305
AL F+AGANSIF G+K LTTP D D D + K LGL P+ +
Sbjct: 281 ALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELLNREAATEG 330
|
Length = 335 |
| >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-131
Identities = 165/285 (57%), Positives = 207/285 (72%), Gaps = 2/285 (0%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ TLLSIKTG C EDC YCPQSSRY TG++ ++LM + V+++A+KAK AGSTRFCM
Sbjct: 39 QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCM 98
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAW++ R + + + V+ ++ MG+E C TLG L + QA L AGL YNHNLDT
Sbjct: 99 GAAWKNPHERDMPYLE--QMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDT 156
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 198
S EFY IITTR+Y ERL+TL+ VR+AGI VCSGGI+GLGE +DR GLL LA LPT P
Sbjct: 157 SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPP 216
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPIN L+ VKGTPL D V+ ++ IR IA ARI+MP + VRLSAGR + + QA+C
Sbjct: 217 ESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC 276
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGE 303
F+AGANSIF G KLLTTPN + D D +F+ LGL P+ + G+
Sbjct: 277 FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGD 321
|
Length = 345 |
| >gnl|CDD|235755 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 3e-88
Identities = 106/287 (36%), Positives = 169/287 (58%), Gaps = 11/287 (3%)
Query: 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFC 77
++V+ T+++ K+G C EDC YC QS+ V + + +++AA++A E G+ FC
Sbjct: 53 KKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFC 112
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136
+ A+ R G++ +Q++E VK I+ + +E+C LG+L + QA LK+AG+ YNHNL
Sbjct: 113 IVASGRGPSGKE--VDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNL 170
Query: 137 DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT 196
+TSR ++ ++TT +Y++R++T + V+ AGI CSGGIIG+GE+ EDRV L L
Sbjct: 171 ETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELD- 229
Query: 197 HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR-VRF-SMPE 254
+S+PIN L + GTPL++ + E ++ IA R++ P +R++ GR V S+
Sbjct: 230 -ADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSL-- 286
Query: 255 QALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHE 301
Q L L GANS+ G LTT AD M + LG + +
Sbjct: 287 QPL-GLGGANSVIVGN-YLTTVGQPATADLDMIEDLGFEIELDALKA 331
|
Length = 336 |
| >gnl|CDD|236279 PRK08508, PRK08508, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 2e-63
Identities = 103/285 (36%), Positives = 153/285 (53%), Gaps = 20/285 (7%)
Query: 17 MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRF 76
M+E+ C + +I +G C EDC YC QS+ Y +K K + ++Q A+ AK G+ F
Sbjct: 1 MKEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGF 60
Query: 77 CMGAAWRDTIGRKTNFNQILEYV--------KDIRDMGMEVCCTLGMLEKHQAIELKKAG 128
C+ T GR + ++ LEYV K++ + + C G Q ELKKAG
Sbjct: 61 CLV-----TSGRGLD-DKKLEYVAEAAKAVKKEVPGLHLIACN--GTASVEQLKELKKAG 112
Query: 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188
+ +YNHNL+TS+EF+ KI TT +++ER +T ++ +EAG+ +CSGGI GLGE+ EDR+ L
Sbjct: 113 IFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFL 172
Query: 189 HTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV 248
+LA+L P S PIN + PL + E + ++ A+ +P A + ++ GR
Sbjct: 173 KSLASL--SPHSTPINFFIPNPALPL-KAPTLSADEALEIVRLAKEALPNARLMVAGGRE 229
Query: 249 RFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLT 293
Q F AGAN+I G+ LTT D K LG
Sbjct: 230 VVFGERQYEIFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFE 273
|
Length = 279 |
| >gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-38
Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFC 77
L I T GC C++C S +A+++ + E G
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSLRGKLRS----RYLEALVREIELLAEKGEKEGLVGTVF 56
Query: 78 MGAAWRDTIGRKTNFNQILEYVKDI----RDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133
+G + + ++LE +++I +D+ + + L + LK+AG+ +
Sbjct: 57 IGGGTPTLLSPEQ-LEELLEAIREILGLAKDVEITIETRPDTLTEELLEALKEAGVNRVS 115
Query: 134 HNLDT-SREFYSKIITTRSYDERLETLKHVREAG-INVCSGGIIGL-GEAEEDRVGLLHT 190
+ + E I + ++ LE ++ +REAG I V + I+GL GE EED L
Sbjct: 116 LGVQSGDDEVLKAINRGHTVEDVLEAVELLREAGPIKVSTDLIVGLPGETEEDFEETLKL 175
Query: 191 LATLPTHPESVPINALLAVKGTPLQDQ----KPVEIWEMIRMI 229
L L P+ V I L GTPL KP E ++
Sbjct: 176 LKEL--GPDRVSIFPLSPRPGTPLAKMYKRLKPPTKEERAELL 216
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|214877 smart00876, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 8e-35
Identities = 47/94 (50%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 202 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL 260
PIN L ++GTPL+D PV E +R IA AR+ +P A +RLS GR QALCF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 261 AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 294
AGANSIF G+K LTT D M + LGL P
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLEP 94
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers.. This domain therefore may be involved in co-factor binding or dimerisation. Length = 94 |
| >gnl|CDD|219245 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 8e-35
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA 261
PIN L ++GTPL+DQ P+ E ++ IA R+++P A +RLS GR Q L F++
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 262 GANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 294
GANS F G L T+ N D D M K LGL P
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLEP 93
|
Biotin synthase (BioB), EC:2.8.1.6, catalyzes the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerisation (Finn, RD personal observation). Length = 93 |
| >gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-21
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Query: 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87
I T GC+ C+YC + ++ + +++ A++ G + + +
Sbjct: 2 IVTRGCNLRCTYCAF--PSIRARGKGRELSPEEILEEAKELARLGVEVVILTGG--EPLL 57
Query: 88 RKTNFNQILEYVKDIRDMGMEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSK 145
+ +K G+ + +L++ ELK+AGL + +L + + K
Sbjct: 58 LPDLVELLERLLKLREGEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 146 II-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTL 191
II +++E LE L+ +REAGI V I+GL GE +ED L L
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 8e-16
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 15/208 (7%)
Query: 30 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 89
T GC+ +C +C + G + + + +AKE G +
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPESPPEIEEIL--DIVLEAKERGVEVVILTGGEPLLYPEL 61
Query: 90 TNFNQILEYVKDIRDMGMEVC-CTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII 147
+L +K G E+ T G L + ELK+ GL +LD+ E + I
Sbjct: 62 AE---LLRRLKK-ELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKI 117
Query: 148 --TTRSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPI 203
+ S+ ERLE LK +REAG+ + + ++GLG + E+D L P+ V +
Sbjct: 118 RGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRS--PDRVSL 175
Query: 204 NALLAVKGTPLQDQ-KPVEIWEMIRMIA 230
LL +GTPL+ V +++R+IA
Sbjct: 176 FRLLPEEGTPLELAAPVVPAEKLLRLIA 203
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin. Length = 204 |
| >gnl|CDD|188425 TIGR03910, pyrrolys_PylB, pyrrolysine biosynthesis radical SAM protein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-13
Identities = 52/219 (23%), Positives = 104/219 (47%), Gaps = 15/219 (6%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAA---WRDTIG 87
C +C++C + + ++ + T++ + AA+ ++G MG D G
Sbjct: 66 CKNNCAFC-YYRKSNHAIRRYRK-TREEIKAAARALADSGVHLIDLTMGEDPYYHNDPRG 123
Query: 88 RKTNFNQILEYVKDI-RDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT-SREFYSK 145
F ++ E V+ + + G+ V + G+++ +LK+AG Y +T RE Y+K
Sbjct: 124 ----FERLAELVRMVKEETGLPVMISPGVVDNETLKKLKEAGANWYACYQETHDRELYNK 179
Query: 146 IITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 205
+ +S+DER+ + +H + G + G + G+G+ ED L + +L + V +
Sbjct: 180 LRVGQSFDERMNSKRHAKRIGYLIEEGILTGVGDDIEDTAISLRGMKSL--DADQVRVMT 237
Query: 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244
+ KGTPL+ + +R+IA R++ P ++ S
Sbjct: 238 FVPQKGTPLEGKDVEGNLAELRIIAIMRLLFPDRLIPAS 276
|
This model describes a radical SAM protein, PylB, that is part of the three-gene cassette sufficient for the biosynthesis of pyrrolysine (the twenty-second amino acid) when expressed heterologously in E. coli. The pyrrolysine next is ligated to its own tRNA and incorporated at special UAG codons [Amino acid biosynthesis, Other]. Length = 347 |
| >gnl|CDD|188472 TIGR03957, rSAM_HmdB, 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-12
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 123 ELKKAGLTAYNHNLDT-SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE 181
EL + G NL+T + E + K+ ++R+ + V + GI + SG +IG+GE+
Sbjct: 137 ELARYGTDTICCNLETTNEELFKKLKPGEELEDRIRVCEMVCKYGIELSSGLLIGIGESY 196
Query: 182 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV 241
EDR+ L L E +PI GTP+++ P + E + IA R++ P +
Sbjct: 197 EDRLEHLKFLKRFENLGE-IPIMGFNPYPGTPMENHPPCSLLEQAKTIAVTRLMYPDIRI 255
Query: 242 -----RLSAGRVRFSMPEQALCFLAGANSIFT 268
+ V+F++ +AGA+++ T
Sbjct: 256 TVPTPTIGPENVQFAL-------MAGADNVAT 280
|
Members of this archaeal protein family are HmdB, a partially characterized radical SAM protein with an unusual CX5CX2C motif. Its gene flanks the H2-forming methylene-H4-methanopterin dehydrogenase gene hmdA, found in hydrogenotrophic methanogens. HmdB appears to act in in biosynthesis of the novel cofactor of HmdA [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]. Length = 317 |
| >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 34/234 (14%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR--FCMG-------AAWR 83
C C YC + R G L++ + V++ +K AG T F G R
Sbjct: 14 CRNRCGYC--TFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAR 71
Query: 84 DTIGRKTNFNQILEYVKDIRDMGMEVCCTL-----GMLEKHQAIELKKA----GLTAYNH 134
+ + ++ LEY++++ ++ +E L G++ + + LK GL
Sbjct: 72 EWLAEM-GYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLM---- 126
Query: 135 NLDTSREFYSKIITTR-SYD----ERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 189
L+T+ E K S RLET++ I +G +IG+GE E+R L
Sbjct: 127 -LETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLL 185
Query: 190 TLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 240
+ L H + V + A GTP+++ + EM+R +A AR+++P +
Sbjct: 186 AIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDI 239
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 322 |
| >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 4e-11
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 51/257 (19%)
Query: 33 CSEDCSYC------PQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM-----GAA 81
C +C YC RY ++ + +++ A+KA E G +
Sbjct: 49 CRNNCLYCGLRRDNKNIERY--------RLSPEEILECAKKAYELGYRTIVLQSGEDPYY 100
Query: 82 WRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK-HQAIEL-KKAGLTAYNHNLDTS 139
+ I + +K+I+ ++V TL + E+ ++ + K+AG Y +T+
Sbjct: 101 TDEKIA---------DIIKEIKK-ELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETA 150
Query: 140 -REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTH 197
+E Y+K+ S++ R+ LK ++E G V SG ++GL G+ ED + L L
Sbjct: 151 DKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD-- 208
Query: 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-------AMVRLSA-GRVR 249
+ + I + TPL+D+K + ++++A R+++P A+ L+ GR
Sbjct: 209 LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGR-- 266
Query: 250 FSMPEQALCFLAGANSI 266
E+ L AGAN +
Sbjct: 267 ----EKGL--KAGANVV 277
|
Length = 323 |
| >gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 34/258 (13%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92
C DC++C + G ++ + +++ ++A + G T + + +
Sbjct: 69 CVNDCTFC--AFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGG----EHPELSL 122
Query: 93 NQILEYVKDIRDMGMEVCC---TLGMLEKHQAI----------ELKKAGL-----TAYNH 134
E + I++ ++ + G + LK+AGL
Sbjct: 123 EYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEI 182
Query: 135 NLDTSREFYS--KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLA 192
+ R+ + K S +E LE + GI + ++G E EDR+ L +
Sbjct: 183 LSEEVRKIHCPPKK----SPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIR 238
Query: 193 TLPT---HPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV 248
L + G P + + + ++ IA ARI + + + A +
Sbjct: 239 DLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWL 298
Query: 249 RFSMPEQALCFLAGANSI 266
R + L+GAN +
Sbjct: 299 RDGVILAQAALLSGANDL 316
|
Length = 370 |
| >gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 62/244 (25%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTR--FCMG----------A 80
C C YC + R D G L++ + V + ++ +AG T F G
Sbjct: 22 CRNRCGYC--TFRRDPG--QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIK 77
Query: 81 AWRDTIGRKTNFNQILEYVKDI----RDMGM------------------EVCCTLG-MLE 117
+G + ILEY+ D+ + G+ EV ++G MLE
Sbjct: 78 EQLAEMGYSS----ILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNASMGLMLE 133
Query: 118 KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 177
Q L H R K + RLET+++ + I +G +IG+
Sbjct: 134 --QTSPR----LLNTVH-----RGSPGKDP-----ELRLETIENAGKLKIPFTTGILIGI 177
Query: 178 GEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234
GE EDR L +A L H + V I G P+++ + EM+R++A AR+
Sbjct: 178 GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARL 237
Query: 235 VMPK 238
++P
Sbjct: 238 ILPP 241
|
Length = 336 |
| >gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 122 IELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEA 180
+EL GL + T + +I + ++ +K +R+ GI VC+ I GL GE
Sbjct: 146 VEL---GLQTAHD--KTLK----RINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGET 196
Query: 181 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARI 234
++ + +A L + + ++ L VKGTP++ K + + E + ++
Sbjct: 197 RDEMLETAKIVAELGV--DGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLE 254
Query: 235 VMPKAMV--RLSA 245
+P +V R++
Sbjct: 255 HLPPEVVIHRITG 267
|
Length = 312 |
| >gnl|CDD|223397 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 123 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA 180
+ AG +NHN++T Y ++ +Y+ L L+ +E G ++ SG ++GLGE
Sbjct: 167 IVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGET 226
Query: 181 EEDRVGLLHTL 191
+E+ + ++ L
Sbjct: 227 DEEVIEVMDDL 237
|
Length = 306 |
| >gnl|CDD|233968 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 30 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 89
T C+ C YC G ++ + + + + A E G + + T G
Sbjct: 17 TDRCNLSCFYC---HMEGEDRSGGNELSPEEIERIVRVASEFGVRKV------KITGGEP 67
Query: 90 T---NFNQILEYVKD--IRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT-SREFY 143
+ +I+ +KD I+D+ M T G+L + A +LK+AGL N +LDT E Y
Sbjct: 68 LLRKDLIEIIRRIKDYGIKDVSM---TTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKY 124
Query: 144 SKIITTRSYDERLETLKHVREAGI 167
KI + D +E ++ +AG+
Sbjct: 125 KKITGRGALDRVIEGIESAVDAGL 148
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 302 |
| >gnl|CDD|237261 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 118 KHQAIE-LKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGI 174
+ + + + A +NHNL+T + Y L+ L +E ++ SG +
Sbjct: 152 QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLM 211
Query: 175 IGLGEAEEDRVGLLHTL 191
+GLGE E++ + L L
Sbjct: 212 LGLGETEDEVIETLRDL 228
|
Length = 290 |
| >gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 68/267 (25%), Positives = 103/267 (38%), Gaps = 50/267 (18%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTN 91
C C +C + R G L++ + + + A +A +AG+T C+ G D G
Sbjct: 49 CYGGCGFC--AFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG--DF 104
Query: 92 FNQILEYVKD-IRDMG------MEV---CCTLGMLEKHQAIELKKAGL-----TAYNHNL 136
+ IL VK+ + M MEV G+ + LK+AGL TA
Sbjct: 105 YLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILD 164
Query: 137 DTSREFYSKIITTR--SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194
D R K+I S E +E +K + GI + + G E E V L L +
Sbjct: 165 DEVR----KVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREI 220
Query: 195 --PTH--PESVPI-----NALLAVKG------TPLQDQKPVEIWEMIRMIATARIVMPKA 239
T E VP+ NA L +KG T +D K + A ARI++
Sbjct: 221 QEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLK---------VHAIARILLHGL 271
Query: 240 MVRLSAGRVRFSMPEQALCFLAGANSI 266
+ + A V+ + GAN +
Sbjct: 272 IDNIQASWVKLGKKLAQVALRCGANDL 298
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 343 |
| >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 157 ETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215
+ +K R+ GI VCS I+GL GE E+ + ++ L + + I+ L VKGT +
Sbjct: 167 DAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDV--DGIKIHPLHVVKGTKMA 224
Query: 216 DQ 217
Sbjct: 225 KM 226
|
This family has a cluster of conserved Cys residues suggestive of Fe-S cluster binding. Members belong to the radical-SAM family of putative This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain [Unknown function, Enzymes of unknown specificity]. Length = 302 |
| >gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 155 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKG 211
RL L+ + +G +IG+GE +R L + L H + V + A
Sbjct: 220 RLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPD 279
Query: 212 TPLQDQKPVEIWEMIRMIATARIVMPKAM 240
T + + E++ IA AR+V+ M
Sbjct: 280 TAMAGVPDAGLEELLATIAVARLVLGPKM 308
|
Length = 843 |
| >gnl|CDD|225314 COG2516, COG2516, Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84
L++ GGC DC+YCPQ +R T +K++++ A + + +G R
Sbjct: 33 LMTTYPGGCIADCAYCPQ-ARSSTANPPKKVLSR-VEWPAVALEEVLKRLFYDLGNFKRI 90
Query: 85 TIGRKTNFNQILEYVKDIRDMGMEV---CCTLGML-----------EKHQAIELKKAGLT 130
I Q + Y + + D+ + + LG K + E +K G
Sbjct: 91 CI-------QQIAYPRALNDLKLILERLHIRLGDPITISECITAVSLKEELEEYRKLGAD 143
Query: 131 AYNHNLDTSRE-FYSKIITT----RSYDERLETLKHVREA--GINVCSGGIIGLGEAEED 183
D + E + K+ T S++ E L+ V EA V I+GLGE+++D
Sbjct: 144 YLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIVGLGESDKD 203
Query: 184 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243
V + + V + A +KGT ++++KP + E R I AR ++ V L
Sbjct: 204 IVETIKRVRKRGG---IVSLFAFTPLKGTQMENRKPPPV-ERYRKIQVARYLIGNGEVDL 259
Query: 244 SAG 246
Sbjct: 260 EDF 262
|
Length = 339 |
| >gnl|CDD|235493 PRK05481, PRK05481, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 0.003
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 132 YNHNLDTSREFYSKIITTR---SYDERLETLKHVREAGINVC--SGGIIGLGEAEE 182
+NHNL+T Y ++ R Y+ LE LK +E + SG ++GLGE +E
Sbjct: 159 FNHNLETVPRLYKRV---RPGADYERSLELLKRAKELHPGIPTKSGLMVGLGETDE 211
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 320 | |||
| PLN02389 | 379 | biotin synthase | 100.0 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 100.0 | |
| PRK15108 | 345 | biotin synthase; Provisional | 100.0 | |
| KOG2900 | 380 | consensus Biotin synthase [Coenzyme transport and | 100.0 | |
| PRK08508 | 279 | biotin synthase; Provisional | 100.0 | |
| PRK06256 | 336 | biotin synthase; Validated | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 100.0 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 100.0 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 100.0 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 100.0 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 100.0 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 100.0 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 100.0 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 100.0 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 100.0 | |
| PRK07094 | 323 | biotin synthase; Provisional | 100.0 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 100.0 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 100.0 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 100.0 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 100.0 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 100.0 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 99.94 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 99.93 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.93 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 99.93 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.93 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 99.93 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 99.92 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 99.92 | |
| PLN02428 | 349 | lipoic acid synthase | 99.91 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.91 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 99.91 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 99.91 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 99.91 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 99.9 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 99.89 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 99.89 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 99.89 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 99.89 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK14331 | 437 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.89 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 99.89 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 99.89 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 99.89 | |
| TIGR01125 | 430 | MiaB-like tRNA modifying enzyme YliG, TIGR01125. T | 99.89 | |
| PRK14327 | 509 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 99.88 | |
| TIGR01578 | 420 | MiaB-like-B MiaB-like tRNA modifying enzyme, archa | 99.88 | |
| PRK14339 | 420 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.88 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 99.87 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14335 | 455 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14336 | 418 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| TIGR01574 | 438 | miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 | 99.87 | |
| PRK14330 | 434 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14328 | 439 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.87 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 99.87 | |
| PRK14862 | 440 | rimO ribosomal protein S12 methylthiotransferase; | 99.86 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 99.86 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, | 99.86 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 99.86 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 99.86 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.86 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.86 | |
| PRK14333 | 448 | (dimethylallyl)adenosine tRNA methylthiotransferas | 99.85 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 99.85 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 99.85 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 99.84 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 99.83 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of th | 99.82 | |
| PRK08629 | 433 | coproporphyrinogen III oxidase; Provisional | 99.82 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 99.81 | |
| TIGR02493 | 235 | PFLA pyruvate formate-lyase 1-activating enzyme. A | 99.81 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 99.8 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 99.8 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 99.79 | |
| PF04055 | 166 | Radical_SAM: Radical SAM superfamily; InterPro: IP | 99.78 | |
| TIGR01210 | 313 | conserved hypothetical protein TIGR01210. This fam | 99.77 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; P | 99.76 | |
| PRK13762 | 322 | tRNA-modifying enzyme; Provisional | 99.76 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 99.72 | |
| TIGR02495 | 191 | NrdG2 anaerobic ribonucleoside-triphosphate reduct | 99.7 | |
| TIGR03822 | 321 | AblA_like_2 lysine-2,3-aminomutase-related protein | 99.69 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 99.69 | |
| PRK00955 | 620 | hypothetical protein; Provisional | 99.67 | |
| PRK14460 | 354 | ribosomal RNA large subunit methyltransferase N; P | 99.66 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Pos | 99.66 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 99.65 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and convers | 99.65 | |
| PRK14469 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.64 | |
| PRK01254 | 707 | hypothetical protein; Provisional | 99.64 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 99.64 | |
| PRK14455 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.64 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Ch | 99.63 | |
| PRK14459 | 373 | ribosomal RNA large subunit methyltransferase N; P | 99.63 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function p | 99.62 | |
| PF06968 | 93 | BATS: Biotin and Thiamin Synthesis associated doma | 99.61 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conver | 99.61 | |
| PRK14468 | 343 | ribosomal RNA large subunit methyltransferase N; P | 99.61 | |
| smart00876 | 94 | BATS Biotin and Thiamin Synthesis associated domai | 99.61 | |
| TIGR00048 | 355 | radical SAM enzyme, Cfr family. A Staphylococcus s | 99.6 | |
| KOG2876 | 323 | consensus Molybdenum cofactor biosynthesis pathway | 99.6 | |
| PRK14470 | 336 | ribosomal RNA large subunit methyltransferase N; P | 99.59 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 99.59 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function p | 99.57 | |
| PRK14463 | 349 | ribosomal RNA large subunit methyltransferase N; P | 99.57 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) | 99.56 | |
| PRK14466 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.55 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 99.54 | |
| PRK14462 | 356 | ribosomal RNA large subunit methyltransferase N; P | 99.53 | |
| PRK14457 | 345 | ribosomal RNA large subunit methyltransferase N; P | 99.52 | |
| TIGR00238 | 331 | KamA family protein. Note that the E. coli homolog | 99.52 | |
| PRK14467 | 348 | ribosomal RNA large subunit methyltransferase N; P | 99.52 | |
| TIGR03821 | 321 | AblA_like_1 lysine-2,3-aminomutase-related protein | 99.49 | |
| TIGR03820 | 417 | lys_2_3_AblA lysine-2,3-aminomutase. This model de | 99.47 | |
| PRK14454 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.47 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 99.45 | |
| PRK14453 | 347 | chloramphenicol/florfenicol resistance protein; Pr | 99.44 | |
| KOG2672 | 360 | consensus Lipoate synthase [Coenzyme transport and | 99.44 | |
| PRK11194 | 372 | ribosomal RNA large subunit methyltransferase N; P | 99.42 | |
| PRK14464 | 344 | ribosomal RNA large subunit methyltransferase N; P | 99.38 | |
| PRK14465 | 342 | ribosomal RNA large subunit methyltransferase N; P | 99.37 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn | 99.36 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 99.34 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairp | 99.33 | |
| PRK14461 | 371 | ribosomal RNA large subunit methyltransferase N; P | 99.31 | |
| KOG4355 | 547 | consensus Predicted Fe-S oxidoreductase [General f | 99.25 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function pr | 99.25 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy produc | 99.21 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 99.03 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General funct | 99.02 | |
| PF13353 | 139 | Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A | 98.99 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recom | 98.95 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [ | 98.88 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of | 98.82 | |
| KOG2492 | 552 | consensus CDK5 activator-binding protein [Signal t | 98.81 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function pr | 98.76 | |
| PF13394 | 119 | Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B | 98.68 | |
| TIGR02826 | 147 | RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph | 98.67 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport | 98.64 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 98.47 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 98.43 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function p | 98.42 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 98.37 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 98.35 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 98.34 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 98.34 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 98.31 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 98.31 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 98.29 | |
| TIGR02491 | 154 | NrdG anaerobic ribonucleoside-triphosphate reducta | 98.29 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 98.25 | |
| PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating | 98.24 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 98.22 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 98.21 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 98.18 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 98.11 | |
| KOG2535 | 554 | consensus RNA polymerase II elongator complex, sub | 98.09 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttrans | 98.06 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 97.96 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 97.93 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 97.92 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 97.86 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 97.78 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 97.73 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.63 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 97.61 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 97.55 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 97.51 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 97.5 | |
| PRK14057 | 254 | epimerase; Provisional | 97.37 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 97.37 | |
| PRK08005 | 210 | epimerase; Validated | 97.32 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 97.29 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 97.28 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.28 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 97.24 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 97.23 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 97.23 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 97.19 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 97.15 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.13 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.13 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 97.11 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 97.08 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 96.96 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.65 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 96.26 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.19 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 96.0 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 95.92 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 95.74 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 95.65 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.61 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 95.59 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 95.41 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.4 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 95.19 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 95.12 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 95.0 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 94.95 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 94.93 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 94.69 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 94.35 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 94.27 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 94.17 | |
| PF05913 | 357 | DUF871: Bacterial protein of unknown function (DUF | 94.09 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 93.96 | |
| COG3589 | 360 | Uncharacterized conserved protein [Function unknow | 93.84 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 93.75 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 93.73 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 93.42 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 93.32 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 93.26 | |
| PRK15452 | 443 | putative protease; Provisional | 93.15 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.04 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 92.7 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 92.63 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 92.55 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 92.37 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 92.3 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacteri | 92.19 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 92.16 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 92.15 | |
| KOG1160 | 601 | consensus Fe-S oxidoreductase [Energy production a | 92.07 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 91.98 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 91.97 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 91.93 | |
| PF07745 | 332 | Glyco_hydro_53: Glycosyl hydrolase family 53; Inte | 91.9 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 91.83 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 91.82 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 91.81 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 91.7 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 91.59 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 91.53 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 91.5 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.36 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 91.32 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.26 | |
| PLN02591 | 250 | tryptophan synthase | 91.21 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 91.13 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 90.99 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 90.83 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 90.82 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 90.81 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 90.66 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.46 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 90.36 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 89.97 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 89.9 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 89.56 | |
| cd06543 | 294 | GH18_PF-ChiA-like PF-ChiA is an uncharacterized ch | 89.5 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 89.49 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 89.49 | |
| PRK13753 | 279 | dihydropteroate synthase; Provisional | 89.48 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 89.44 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 89.39 | |
| TIGR00620 | 199 | sporelyase spore photoproduct lyase. This family i | 89.37 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 89.27 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 89.22 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 89.21 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 89.0 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 88.96 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 88.93 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 88.91 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 88.91 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 88.89 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 88.83 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 88.71 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 88.65 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 88.57 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 88.54 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 88.51 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 88.27 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 88.13 | |
| COG0685 | 291 | MetF 5,10-methylenetetrahydrofolate reductase [Ami | 88.08 | |
| PF06180 | 262 | CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 | 88.06 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 87.93 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 87.91 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 87.87 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 87.73 | |
| PF10113 | 505 | Fibrillarin_2: Fibrillarin-like archaeal protein; | 87.58 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 87.24 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 87.15 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 87.11 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 87.1 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 86.8 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 86.77 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 86.69 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 86.59 | |
| PF10566 | 273 | Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: | 86.5 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 86.4 | |
| PRK15452 | 443 | putative protease; Provisional | 86.39 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 86.35 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 86.05 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 86.02 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 85.92 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 85.91 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 85.83 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 85.82 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 85.79 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 85.6 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 85.47 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 85.45 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 85.35 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 85.33 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 85.32 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 85.3 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 85.28 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 85.24 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 85.23 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 85.16 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 85.15 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 85.14 | |
| PF01136 | 233 | Peptidase_U32: Peptidase family U32 This is family | 85.12 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 85.07 | |
| COG1751 | 186 | Uncharacterized conserved protein [Function unknow | 85.07 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 85.01 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 84.89 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 84.69 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 84.57 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 84.37 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 84.37 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 84.18 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 84.17 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 84.1 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 84.06 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 84.01 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 83.97 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 83.76 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 83.71 | |
| cd00537 | 274 | MTHFR Methylenetetrahydrofolate reductase (MTHFR). | 83.66 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 83.63 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 83.51 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 83.38 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 83.29 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 83.25 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 83.23 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 83.13 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 83.11 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 83.03 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 82.84 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 82.83 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 82.7 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 82.53 | |
| PF06463 | 128 | Mob_synth_C: Molybdenum Cofactor Synthesis C; Inte | 82.44 | |
| PLN02540 | 565 | methylenetetrahydrofolate reductase | 82.42 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 82.39 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 82.1 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 81.89 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 81.86 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 81.82 | |
| PF02219 | 287 | MTHFR: Methylenetetrahydrofolate reductase; InterP | 81.63 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 81.55 | |
| COG2875 | 254 | CobM Precorrin-4 methylase [Coenzyme metabolism] | 81.5 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 81.44 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 81.29 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 81.19 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 81.16 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 81.12 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 80.83 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 80.82 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 80.72 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 80.71 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 80.7 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 80.5 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 80.5 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 80.48 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.44 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 80.14 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 80.11 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 80.1 |
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-57 Score=409.81 Aligned_cols=312 Identities=84% Similarity=1.272 Sum_probs=285.1
Q ss_pred hHHhhhccC-CCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 8 TLLFSISSS-MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 8 ~~~~r~~~~-~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
+.+.|++++ |++|++|.++++.|++|+.+|.||+++...+.+.+.++.+++|+|++.++.+.+.|+++|+++++++...
T Consensus 67 A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~ 146 (379)
T PLN02389 67 GAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV 146 (379)
T ss_pred HHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCC
Confidence 334444444 6799999999999999999999999986544455557779999999999999999999999987766666
Q ss_pred CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 87 GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
++|..++++.++++.+|+.++++++++|.++++.+++|+++|+|++++++||.++.|+.++++++|++++++++.+++.|
T Consensus 147 ~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~G 226 (379)
T PLN02389 147 GRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAG 226 (379)
T ss_pred CChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcC
Confidence 77778999999999999888999999999999999999999999999999999889999998999999999999999999
Q ss_pred CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 167 INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 167 i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
+++++++|+|+||+.+|+.+++.++++++.+++.++++.|+|+||||+.+.+++++.+.+++++++|+++|+..+++++|
T Consensus 227 i~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~g 306 (379)
T PLN02389 227 ISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAG 306 (379)
T ss_pred CeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 99999999999999999999999999996448899999999999999998888999999999999999999999999999
Q ss_pred ccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCcCCcccccchhhhhhhccC
Q 020848 247 RVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 319 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (320)
|..+.+..+..+|.+|||++|+|+.++|+.|+++++|.+||+++||.|....+-..+-+.||||-|.||||.|
T Consensus 307 r~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
T PLN02389 307 RVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPPSFGEDEERASEAERCEEAVSSS 379 (379)
T ss_pred ccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCCCccccccccccccccccchHHHHhccC
Confidence 9888888889999999999999993399999999999999999999999887888899999999999999975
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=372.93 Aligned_cols=289 Identities=55% Similarity=0.899 Sum_probs=273.4
Q ss_pred hhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 7 TTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 7 ~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
-+..+|+||+|+.|.++++|++.|++|+.+|.||+++.+++.+...++.+++|+|++.++.+++.|+.+++++++|+. .
T Consensus 35 aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~ 113 (335)
T COG0502 35 AAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-P 113 (335)
T ss_pred HHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-C
Confidence 355688999999999999999999999999999999987777777888899999999999999999999999888876 4
Q ss_pred CCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 020848 87 GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA 165 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~ 165 (320)
+ ..++++.++++.+| +.+++++.+.|.++++++++|+++|+|++++.+||.++.|+.+.++++|++++++++.++++
T Consensus 114 ~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~ 191 (335)
T COG0502 114 G--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREA 191 (335)
T ss_pred C--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHc
Confidence 4 57899999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA 245 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~ 245 (320)
|++++++.|+|+||+.+|..+++..++++.. +++|+++.|+|+||||+++.++.++.+.++++|++|+++|+..|++++
T Consensus 192 Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~ 270 (335)
T COG0502 192 GIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSA 270 (335)
T ss_pred CCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccC
Confidence 9999999999999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred cccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCC
Q 020848 246 GRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSF 299 (320)
Q Consensus 246 g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~ 299 (320)
|++.+.+..+..+|.+|||++++|++|+|+.++..+++.+|++++|+.|..+..
T Consensus 271 gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~~~ 324 (335)
T COG0502 271 GRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELLNR 324 (335)
T ss_pred CcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCcccccc
Confidence 999999999999999999999999999999999999999999999999998743
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-53 Score=382.06 Aligned_cols=297 Identities=55% Similarity=0.912 Sum_probs=265.5
Q ss_pred hHHhhhccCC-CeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 8 TLLFSISSSM-EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 8 ~~~~r~~~~~-~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
+.+.|+++|| ++|+++.++++.|++|+.+|.||+++.....+.+.+..+++|||++.++.+.+.|+++|++++++..+.
T Consensus 27 A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~ 106 (345)
T PRK15108 27 AQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH 106 (345)
T ss_pred HHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 3444444455 688999999988999999999999986443344556679999999999999999999999977653221
Q ss_pred CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 87 GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
...++++.++++.+|+.++++++++|.++++.+++|+++|+|++++++||.++.|+.++++++|++++++++.+++.|
T Consensus 107 --~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G 184 (345)
T PRK15108 107 --ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG 184 (345)
T ss_pred --cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcC
Confidence 236789999999999888888899999999999999999999999999999899999999999999999999999999
Q ss_pred CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 167 INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 167 i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
+.+++++|+|+||+++|+.+++..+++++..+++++++.|+|.+|||+++.++.++.+.+++++++|+++|+..+++++|
T Consensus 185 ~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g 264 (345)
T PRK15108 185 IKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAG 264 (345)
T ss_pred CceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeeccc
Confidence 99999999999999999999999999996446799999999999999998888899999999999999999999999999
Q ss_pred ccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCcCCccc
Q 020848 247 RVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANV 306 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~ 306 (320)
|+.+.++.+..+|.+|||++++|+.++|+.|.+.+++++||+++||+|++|+++|..-.+
T Consensus 265 ~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 324 (345)
T PRK15108 265 REQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQ 324 (345)
T ss_pred HhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCcccccccccchhh
Confidence 988888888999999999999999768999999999999999999999999999988433
|
|
| >KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=339.52 Aligned_cols=311 Identities=66% Similarity=1.070 Sum_probs=291.4
Q ss_pred chhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+-++-||.++.+.+|..|+++++.|++|..+|.||+++..+++++...+.+..++++++++.+++.|-++||++..|++.
T Consensus 67 ~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~ 146 (380)
T KOG2900|consen 67 AAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDM 146 (380)
T ss_pred HHHHHHhhhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhh
Confidence 34566888889999999999999999999999999999888888777777999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 020848 86 IGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA 165 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~ 165 (320)
.|....++.|+++|+.++.+|++++++.|.++.++.++|+++|+..+++.+||.++.|.++-...+|++++++|+.++++
T Consensus 147 ~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~a 226 (380)
T KOG2900|consen 147 KGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREA 226 (380)
T ss_pred ccchhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~--~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
|++++++-|+|+||..+|.+-++-.+..++.+|++++|+.++|++|||+++ ..++..+++++.++.+|+.+|...|++
T Consensus 227 GikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTARIvMPKaiiRl 306 (380)
T KOG2900|consen 227 GIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEILRTIATARIVMPKAIIRL 306 (380)
T ss_pred cceecccccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHHHHHHhhhheechHHHHHH
Confidence 999999999999999999999999999999899999999999999999987 578899999999999999999999999
Q ss_pred CCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCcCCcccccchhhhhhhccC
Q 020848 244 SAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 319 (320)
Q Consensus 244 ~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (320)
++|+..+....+..+|.+|||++|+|++.+|+.+-+.+++..|+..+|++|.+. |.|+ +-||.|.|....|.|
T Consensus 307 aAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~-f~y~--~sse~en~ekva~a~ 379 (380)
T KOG2900|consen 307 AAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA-FKYD--RSSESENCEKVASAS 379 (380)
T ss_pred hccccccchhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCcc-cccC--CCccccchhhccCCC
Confidence 999988887888999999999999999999999999999999999999999987 7665 567888898765543
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=334.49 Aligned_cols=273 Identities=36% Similarity=0.602 Sum_probs=246.1
Q ss_pred CeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHH
Q 020848 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILE 97 (320)
Q Consensus 18 ~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~ 97 (320)
|+|.+|+++++.|++|+.+|.||+++..+....+.|+.+++|+|++.++.+.+.|+++|++++++... . +..++++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~-~-~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL-D-DKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC-C-cccHHHHHH
Confidence 68999999999999999999999998754434456776899999999999999999999996544332 2 247789999
Q ss_pred HHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 98 YVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 98 ~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
+++.+|+. ++.++.++|.++++.+++|+++|+|++++++||.++.|+.++++++|++++++++.++++|+++++++|+
T Consensus 80 i~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 80 AAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 99999954 5667788999999999999999999999999999889999998999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHH
Q 020848 176 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255 (320)
Q Consensus 176 Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~ 255 (320)
|+||+++|+.+++.++++++ +++++++.|.|.+|||+.. ++.+.++.++++|++|+++|+..|++++|++.+..+.+
T Consensus 160 GlGEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~ 236 (279)
T PRK08508 160 GLGESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQ 236 (279)
T ss_pred ecCCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhH
Confidence 99999999999999999998 7889999999999999975 56899999999999999999999999999976556678
Q ss_pred HHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCC
Q 020848 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 256 ~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~ 296 (320)
..+|.+|||++++|+ |+|+.|++.++|.+||+++||.|..
T Consensus 237 ~~~~~~g~n~~~~g~-~lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 237 YEIFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred HHHHhcCCcceeecC-cccCCCCChHHHHHHHHHcCCCcCc
Confidence 999999999999999 9999999999999999999999863
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=341.48 Aligned_cols=288 Identities=36% Similarity=0.601 Sum_probs=255.6
Q ss_pred hHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 8 TLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.+.|++++|++|.++.++++.|++|+.+|.||+++.........++.+++|+|++.++.+.+.|+.++++++++..+..
T Consensus 43 A~~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~ 122 (336)
T PRK06256 43 AYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG 122 (336)
T ss_pred HHHHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc
Confidence 45667788999999999999889999999999999765432223466689999999999999999999988765443322
Q ss_pred CchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 88 RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
..++++.++++.+++ .++.++++.|.++++.++.|+++|++++.+++||.+++|+.+++++++++++++++.++++|
T Consensus 123 --~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~G 200 (336)
T PRK06256 123 --KEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAG 200 (336)
T ss_pred --hHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcC
Confidence 245789999999984 46778888999999999999999999999999998889999999999999999999999999
Q ss_pred CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 167 INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 167 i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
+.+++++|+|++|+.+|+.+++.++++++ ++.++++.|+|.||||+++.++++..+++++++++|+++|+..|++++|
T Consensus 201 i~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~g 278 (336)
T PRK06256 201 IEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGG 278 (336)
T ss_pred CeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCc
Confidence 99999999999999999999999999998 7899999999999999998888999999999999999999999999999
Q ss_pred ccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCc
Q 020848 247 RVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHE 301 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~ 301 (320)
++....+.+..+| +|||++++|+ |+|+.|.+.+++.+||+++||.|..++.++
T Consensus 279 r~~~~~~~~~~~~-~g~~~~~~g~-~lt~~g~~~~~d~~~~~~~g~~~~~~~~~~ 331 (336)
T PRK06256 279 REVNLRSLQPLGL-GGANSVIVGN-YLTTVGQPATADLDMIEDLGFEIELDALKA 331 (336)
T ss_pred hhhhchhhHHHHh-ccCceeeECC-cccCCCCChHHHHHHHHHCCCCcccCcchh
Confidence 9655566778888 8999999999 999999999999999999999997776543
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=337.37 Aligned_cols=287 Identities=16% Similarity=0.214 Sum_probs=247.8
Q ss_pred HhhhccCCCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 10 LFSISSSMEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 10 ~~r~~~~~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.|++++|++|+++ .++| +||.|..+|.||+|++... ....|. +++|||++.++.+.+.|+++|+|+||.++.
T Consensus 35 ~vR~~~~G~~Vt~~~n~~In-~TN~C~~~C~FCaf~~~~~-~~~~y~-ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~-- 109 (353)
T PRK08444 35 KKRTKLHGKKVYFNVNRHIN-PTNICADVCKFCAFSAHRK-NPNPYT-MSHEEILEIVKNSVKRGIKEVHIVSAHNPN-- 109 (353)
T ss_pred HHHHHhcCCEEEEEecCCcc-cccccccCCccCCCccCCC-CCcccc-CCHHHHHHHHHHHHHCCCCEEEEeccCCCC--
Confidence 34456779999987 7888 5999999999999987543 223454 899999999999999999999999886653
Q ss_pred CchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCCCH
Q 020848 88 RKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTRSY 152 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~~~ 152 (320)
..++++.++++.+|+. ++.+.. +.|...++.+++|+++|++++.. +.|.+ +++++.+++++.+
T Consensus 110 --~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~ 187 (353)
T PRK08444 110 --YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVS 187 (353)
T ss_pred --CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCC
Confidence 2568899999999953 566665 67888999999999999999998 69999 9999999997755
Q ss_pred -HHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCCCCCCCHHHHHH
Q 020848 153 -DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQKPVEIWEMIR 227 (320)
Q Consensus 153 -~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~~~~~~~~e~~~ 227 (320)
++|++.++.|+++|+++++++|+|++||++|+.+++..+++++ .++++|+.|+|+ +|||++..++++..+.++
T Consensus 188 ~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr 265 (353)
T PRK08444 188 SERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ--DKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILK 265 (353)
T ss_pred HHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc--cccCCceEEEecccCCCCCcCCCCCCCCHHHHHH
Confidence 7888888999999999999999999999999999999999998 789999999999 899998888899999999
Q ss_pred HHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCcCCCC
Q 020848 228 MIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPKAPS 298 (320)
Q Consensus 228 ~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p~~~~ 298 (320)
++|++|+++|+ +-++.+.|...+....+.++.+|||++ +.++.+.... ..+.+++.++|+++|++|++|+
T Consensus 266 ~iAi~Rl~L~~-i~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p~~R~ 344 (353)
T PRK08444 266 TIAISRILLDN-IPHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFIPVERD 344 (353)
T ss_pred HHHHHHHhcCC-CCccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCCeeeec
Confidence 99999999987 335667798888888899999999998 4455454433 3679999999999999999999
Q ss_pred CCcCCccc
Q 020848 299 FHEGEANV 306 (320)
Q Consensus 299 ~~~~~~~~ 306 (320)
+.|+.+++
T Consensus 345 t~y~~~~~ 352 (353)
T PRK08444 345 SLYNELKK 352 (353)
T ss_pred CCCCeecc
Confidence 99999864
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=320.71 Aligned_cols=286 Identities=18% Similarity=0.241 Sum_probs=239.6
Q ss_pred hHHhhhccCCCeeEEEE--EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 8 TLLFSISSSMEEVQQCT--LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~--~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+...|++++|++|+++. .++ +|++|+.+|.||+++.... ....+. +++|+|++.++.+.+.|+++|+|+||..+.
T Consensus 23 A~~ir~~~~g~~v~~~~~~~i~-~T~~C~~~C~FC~~~~~~~-~~~~y~-ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~ 99 (343)
T TIGR03551 23 ADELRRDIVGDTVTYVVNRNIN-FTNVCYGGCGFCAFRKRKG-DADAYL-LSLEEIAERAAEAWKAGATEVCIQGGIHPD 99 (343)
T ss_pred HHHHHHHhcCCeEEEEeeeccc-cccccccCCccCCCccCCC-CCCccc-CCHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 34456678899999743 455 5999999999999976422 223354 899999999999999999999999764322
Q ss_pred CCCchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCC
Q 020848 86 IGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR 150 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~ 150 (320)
...+.+.++++.+|+. ++.++. +.|.++++.+++|++||++++.. +.|++ +++++.+++++
T Consensus 100 ----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~ 175 (343)
T TIGR03551 100 ----LDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDK 175 (343)
T ss_pred ----CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCC
Confidence 2467788888888854 455432 57889999999999999999984 67888 89999999875
Q ss_pred -CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCCCCC----CCCCC
Q 020848 151 -SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQD----QKPVE 221 (320)
Q Consensus 151 -~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~~~~----~~~~~ 221 (320)
++++++++++.++++|+++++++|+|++|+.+|+.+++.++++++ ++..+|..|+|+| |||+.+ .++++
T Consensus 176 ~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~ 253 (343)
T TIGR03551 176 LSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFVPLPFVHYNAPLYLKGMARPGPT 253 (343)
T ss_pred CCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEEeccccCCCCccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999998 6788999999977 999964 24578
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCC
Q 020848 222 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGL 292 (320)
Q Consensus 222 ~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~ 292 (320)
.++.++++|++|+++|+..++++++|..+++..+..+|.+|||++ +..+++.... ..+.++++++|+++||
T Consensus 254 ~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~ 333 (343)
T TIGR03551 254 GREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGR 333 (343)
T ss_pred HHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999889999998887776789999999998 3445444333 4688999999999999
Q ss_pred CcCCCCCCcC
Q 020848 293 TPKAPSFHEG 302 (320)
Q Consensus 293 ~p~~~~~~~~ 302 (320)
+|++|+++|+
T Consensus 334 ~~~~r~~~y~ 343 (343)
T TIGR03551 334 IPKQRTTLYE 343 (343)
T ss_pred CeeecCCCCC
Confidence 9999999996
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=320.69 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=241.3
Q ss_pred hhHHhhhccC-CCeeEEEEEeec-ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 7 TTLLFSISSS-MEEVQQCTLLSI-KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 7 ~~~~~r~~~~-~~~v~~~~~l~~-~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
-+.+.|++++ |++|+++...++ +|++|+.+|.||+++... ....+..+++|+|++.++.+.+.|+++|+|+||..+
T Consensus 23 ~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~--~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p 100 (340)
T TIGR03699 23 LADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAP--GHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNP 100 (340)
T ss_pred HHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCC--CCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3455666888 999998765444 699999999999976432 212244589999999999999999999999877533
Q ss_pred CCCCchhHHHHHHHHHHhhhcC--ce-----------EEEeCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCC
Q 020848 85 TIGRKTNFNQILEYVKDIRDMG--ME-----------VCCTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITT 149 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~~--~~-----------i~~~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~ 149 (320)
. ...+.+.++++.+++.+ +. ++.++|.++++.+++|+++|++++.. +.|+. +++++.+.++
T Consensus 101 ~----~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~ 176 (340)
T TIGR03699 101 D----LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK 176 (340)
T ss_pred C----CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC
Confidence 2 24566777888877432 32 23356877899999999999999985 79999 8999998765
Q ss_pred -CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCCCCCCCHHH
Q 020848 150 -RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQKPVEIWE 224 (320)
Q Consensus 150 -~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~~~~~~~~e 224 (320)
.++++++++++.++++|+++++++|+|+||+++|+.+++.++++++ .+.+.|..|+|. +|||+++.+++++++
T Consensus 177 ~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e 254 (340)
T TIGR03699 177 KISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAFIPWTFQPGNTELGKKRPATSTE 254 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEeecccCCCCcccCCCCCCHHH
Confidence 5899999999999999999999999999999999999999999998 677788888885 599999888899999
Q ss_pred HHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCCCCCh----hHHHHHHHHcCCCcCCC
Q 020848 225 MIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF----DADQLMFKVLGLTPKAP 297 (320)
Q Consensus 225 ~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~----~~~~~~i~~~G~~p~~~ 297 (320)
.++++|++|+++|+ .+++++||..+..+.+..+|.+|||++ +..+.+.++.|.+. +++++||+++|++|++|
T Consensus 255 ~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g~~~~~r 333 (340)
T TIGR03699 255 YLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGATHRASREEIIRIIREAGFIPAQR 333 (340)
T ss_pred HHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCCCCCCHHHHHHHHHHcCCCeeee
Confidence 99999999999998 788999998888777889999999993 44444888888776 99999999999999999
Q ss_pred CCCcCCc
Q 020848 298 SFHEGEA 304 (320)
Q Consensus 298 ~~~~~~~ 304 (320)
++.|+.+
T Consensus 334 ~~~y~~~ 340 (340)
T TIGR03699 334 DTLYNIL 340 (340)
T ss_pred cCccccC
Confidence 9999864
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=320.68 Aligned_cols=286 Identities=17% Similarity=0.232 Sum_probs=241.1
Q ss_pred HHhhhccCCCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 9 LLFSISSSMEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 9 ~~~r~~~~~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
.+.|++++|+.|+++ .+++ +|++|+.+|.||+++.... ....|. +++|||++.++.+.+.|++++++++|..+.
T Consensus 33 ~~vr~~~~g~~v~~~~~~~in-~Tn~C~~~C~FCa~~~~~~-~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~- 108 (351)
T TIGR03700 33 ALVRERKHGDKVYFNVNRHLN-YTNICVNGCAFCAFQRERG-EPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPN- 108 (351)
T ss_pred HHHHHHhcCCeEEEeccCCcc-cccccccCCccCceeCCCC-CcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCC-
Confidence 345557789999987 7788 8999999999999986433 223454 899999999999999999999999875442
Q ss_pred CCchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeec-cCcccc-HHHHhhhCCCC-
Q 020848 87 GRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR- 150 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~-i~let~-~~~~~~i~~~~- 150 (320)
..++++.++++.+|+. ++.+.. ..|.++++.+++|+++|++++. .++|+. +++++.+++++
T Consensus 109 ---~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~ 185 (351)
T TIGR03700 109 ---LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKI 185 (351)
T ss_pred ---CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCC
Confidence 3468899999999854 354432 3577889999999999999998 489999 99999999865
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCCCCCC--CCCCHHH
Q 020848 151 SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQDQ--KPVEIWE 224 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~~~~~--~~~~~~e 224 (320)
++++++++++.++++|+++++++|+|+|||++|+.+++..+++++ .++.+|..|+|++ |||++.. ++++..+
T Consensus 186 ~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~--~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e 263 (351)
T TIGR03700 186 SAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ--DETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLD 263 (351)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh--HhhCCceEEEeecccCCCCcccCCCCCCCCHHH
Confidence 678999999999999999999999999999999999999999998 6788999999994 9999876 7799999
Q ss_pred HHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCcC
Q 020848 225 MIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 225 ~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p~ 295 (320)
.++++|++|+++|+ +..+.+.|...+++....++.+|||++ +.++.+.... .++.+++.++|+++|++|+
T Consensus 264 ~lr~iA~~Rl~l~~-i~~i~a~w~~~~~~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p~ 342 (351)
T TIGR03700 264 DLKTLAVSRLYLDN-IPHIKAYWVMLGLKLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVPV 342 (351)
T ss_pred HHHHHHHHHHhcCC-CCcccccccccCHHHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCee
Confidence 99999999999997 445666788878888899999999998 3344443322 3578999999999999999
Q ss_pred CCCCCcCCc
Q 020848 296 APSFHEGEA 304 (320)
Q Consensus 296 ~~~~~~~~~ 304 (320)
+|++.|+++
T Consensus 343 ~r~~~y~~~ 351 (351)
T TIGR03700 343 ERDTLYNEV 351 (351)
T ss_pred eecCCCCcC
Confidence 999999874
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=322.47 Aligned_cols=291 Identities=19% Similarity=0.253 Sum_probs=242.2
Q ss_pred hHHhhhccCCCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 8 TLLFSISSSMEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+...|++++|++|+++ ..++ +|+.|+.+|.||+++... ...+.|. ++.|||++.++.+.+.|+++|+|+||..+.
T Consensus 44 A~~ir~~~~G~~v~~~~~~~i~-~Tn~C~~~C~fC~~~~~~-~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~ 120 (371)
T PRK07360 44 ADRLRKEQVGDTVTYVVNRNIN-FTNICEGHCGFCAFRRDE-GDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGLHPA 120 (371)
T ss_pred HHHHHHHhcCCeEEEEeccCcc-cchhhhcCCccCCcccCC-CCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCCCCC
Confidence 4456668889999874 3455 599999999999998753 2344555 999999999999999999999999775432
Q ss_pred CCCchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCC
Q 020848 86 IGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR 150 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~ 150 (320)
. ...+++.++++.+|+. ++.+.. +.|.++++.+++|++||++++.- +.+.. +++++.+++++
T Consensus 121 ~---~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~ 197 (371)
T PRK07360 121 A---DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEK 197 (371)
T ss_pred C---CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCC
Confidence 2 1368889999999853 455543 56888999999999999999973 45556 67887888754
Q ss_pred -CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCCCCCCC----CCC
Q 020848 151 -SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQDQK----PVE 221 (320)
Q Consensus 151 -~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~~~~~~----~~~ 221 (320)
+.++++++++.++++|+++++++|+|+||+.+|+.+++.++++++ +++.+|..|+|++ |||++... +.+
T Consensus 198 ~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~--~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~ 275 (371)
T PRK07360 198 IKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQ--QETGGITEFVPLPFVHENAPLYERGRVKGGAP 275 (371)
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEeccccCCCCccccccccCCCCC
Confidence 899999999999999999999999999999999999999999998 7889999999965 99997643 246
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCCC------CChhHHHHHHHHcCC
Q 020848 222 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN------NDFDADQLMFKVLGL 292 (320)
Q Consensus 222 ~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~------~~~~~~~~~i~~~G~ 292 (320)
..+.++++|++|+++|+..++++++|..+++..+..+|.+|||++ ++++.+.+..| ++.+++.+||+++||
T Consensus 276 ~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~ 355 (371)
T PRK07360 276 GLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGR 355 (371)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCC
Confidence 777799999999999998889999997777776778999999999 77774444343 689999999999999
Q ss_pred CcCCCCCCcCCccc
Q 020848 293 TPKAPSFHEGEANV 306 (320)
Q Consensus 293 ~p~~~~~~~~~~~~ 306 (320)
+|++|+++|+.+.+
T Consensus 356 ~~~~r~~~y~~~~~ 369 (371)
T PRK07360 356 IPKQRDTLYEIIEV 369 (371)
T ss_pred ceeeecCCcchhcc
Confidence 99999999999865
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=307.95 Aligned_cols=275 Identities=51% Similarity=0.856 Sum_probs=234.7
Q ss_pred ccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHH
Q 020848 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 93 (320)
Q Consensus 14 ~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~ 93 (320)
+++|+.|.++.++++.|++|+++|.||+++..+..+...++.+++++++++++.+.+.|++.+++++++..+.. ....+
T Consensus 20 ~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~-~~~~~ 98 (296)
T TIGR00433 20 HFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKD-REFME 98 (296)
T ss_pred hcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh-HHHHH
Confidence 36799999999999889999999999998764322233456689999999999988899999887554333222 12234
Q ss_pred HHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE
Q 020848 94 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 94 ~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
.+.++.+.+++.++.+.++.|.++++.++.|+++|++.+.+++|+.+++|+.+++++++++++++++.++++|+++.+++
T Consensus 99 ~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 99 YVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE
Confidence 44445444556788888888999999999999999999999999339999999988999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccc-ccCh
Q 020848 174 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSM 252 (320)
Q Consensus 174 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~-~~~~ 252 (320)
|+|++++.+|+.++++++.+++ ++.++++.|+|.|||++++.++++.++.+++++.+|+++|+..+++++++. .+..
T Consensus 179 i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~ 256 (296)
T TIGR00433 179 IFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRE 256 (296)
T ss_pred EEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhh
Confidence 9999999999999999999998 788999999999999999988899999999999999999999888887764 5554
Q ss_pred hHHHHHHHcCCceEeeCCccccCCCCChh-HHHHHHHHcCC
Q 020848 253 PEQALCFLAGANSIFTGEKLLTTPNNDFD-ADQLMFKVLGL 292 (320)
Q Consensus 253 ~~~~~~~~~Gan~~~~~~~~~~~~~~~~~-~~~~~i~~~G~ 292 (320)
..+..++.+|||.++.|+ |+|+.|+++. ++.+|++++||
T Consensus 257 ~~~~~~l~~G~n~i~~g~-~~~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 257 LQQAMCFMAGANSIFVGD-YLTTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred hHHHHHHHhcCceEEEcC-cccCCCCCCcHHHHHHHHHcCC
Confidence 444459999999999998 9999999999 99999999997
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=314.14 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=233.5
Q ss_pred HhhhccCCCeeEE---EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 10 LFSISSSMEEVQQ---CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 10 ~~r~~~~~~~v~~---~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
+.|++++|+.|.+ +.+++ +|++|+.+|.||++++..... +.| .+++|+|++.++.+.+.|.++|+++||..+.
T Consensus 27 ~vr~~~~g~~v~~~~~~~~in-~Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~- 102 (348)
T PRK08445 27 ERKQELHPEKITTFIVDRNIN-YTNICWVDCKFCAFYRHLKED-DAY-ILSFEEIDKKIEELLAIGGTQILFQGGVHPK- 102 (348)
T ss_pred HHHHHHcCCcEEEEecccccc-cccccccCCccCCCccCCCCC-CCe-eCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-
Confidence 4455777888875 44588 599999999999998754322 445 5899999999999999999999998865432
Q ss_pred CCchhHHHHHHHHHHhhhc--CceEEE----------eCCCC-CHHHHHHHHHhccCeec-cCcccc-HHHHhhhCC-CC
Q 020848 87 GRKTNFNQILEYVKDIRDM--GMEVCC----------TLGML-EKHQAIELKKAGLTAYN-HNLDTS-REFYSKIIT-TR 150 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~--~~~i~~----------~~g~l-~~e~l~~L~~aGld~v~-i~let~-~~~~~~i~~-~~ 150 (320)
...+++.++++.+++. ++.+.. +.+.+ .++.+++|+++|++++. .++|+. +++++.+++ +.
T Consensus 103 ---~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~ 179 (348)
T PRK08445 103 ---LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKL 179 (348)
T ss_pred ---CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCC
Confidence 3567888888888854 244321 21233 48999999999999997 689999 899999976 56
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee----ecCCCCCCCC----CCCCH
Q 020848 151 SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL----AVKGTPLQDQ----KPVEI 222 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~----p~~gt~~~~~----~~~~~ 222 (320)
+.++++++++.++++|+++++++|+|++|+++|+.+++..+++++ .++.+|..|+ +.+|||+... ++++.
T Consensus 180 t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~ 257 (348)
T PRK08445 180 DSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRAFILWSFQPDNTPLKEEIPEIKKQSS 257 (348)
T ss_pred CHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeEEeccccCCCCCcccccCCCCCCCCH
Confidence 889999999999999999999999999999999999999999998 5565555554 3379998743 45889
Q ss_pred HHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC----CCChhHHHHHHHHcCCCcC
Q 020848 223 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP----NNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 223 ~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~----~~~~~~~~~~i~~~G~~p~ 295 (320)
.+.++++|++|+++|+ +.+++++|..++...+..+|.+|||++ +.++++...+ +.+.++++++|+++|+.|+
T Consensus 258 ~e~Lr~iAv~Rl~l~~-~~~i~a~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~~ag~~~~~~~~~~~~~i~~~g~~p~ 336 (348)
T PRK08445 258 NRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVKAAGASFRMNQAEMIELIKDIGEIPA 336 (348)
T ss_pred HHHHHHHHHHHHhCCC-CCCccCCCcccCHHHHHHHHhcCCccCccccccccchhccCCCCCCCHHHHHHHHHHcCCCee
Confidence 9999999999999998 677888898777777789999999998 4455554433 3578999999999999999
Q ss_pred CCCCCcCCccc
Q 020848 296 APSFHEGEANV 306 (320)
Q Consensus 296 ~~~~~~~~~~~ 306 (320)
+||++|+++.+
T Consensus 337 ~r~t~y~~~~~ 347 (348)
T PRK08445 337 KRNTAYEILER 347 (348)
T ss_pred eecCCCCeeec
Confidence 99999999853
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=318.77 Aligned_cols=286 Identities=19% Similarity=0.264 Sum_probs=240.4
Q ss_pred chhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+-+.+.|++++|++|+++.++++ |+.|+.+|.||+++.... ... ..+++|||++.++.+.+.|+++|+|+||.++.
T Consensus 58 ~~A~~ir~~~~G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~--~~~-~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~ 133 (371)
T PRK09240 58 QKAQRLTRQRFGNTISLYTPLYL-SNYCANDCTYCGFSMSNK--IKR-KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA 133 (371)
T ss_pred HHHHHHHHHHcCCEEEEEeceEE-cccccCcCCcCCCCCCCC--Ccc-ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 33455666888999999999995 999999999999976432 233 56999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHH
Q 020848 86 IGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKH 161 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~ 161 (320)
...++++.++++.+++...++.++.+.++.+.++.|+++|++++++++||+ ++.|+.+++ ++++++++++++.
T Consensus 134 ---~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~ 210 (371)
T PRK09240 134 ---KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPER 210 (371)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHH
Confidence 136789999999998543235556688999999999999999999999999 999999974 6799999999999
Q ss_pred HHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCC----CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020848 162 VREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 162 a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~ 236 (320)
++++|++ +++++|+|+|++.+|+.+++..+++|+.. ..+|+|+.|+|++| ++.+.+++++.+++++++.+|+++
T Consensus 211 a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~l 289 (371)
T PRK09240 211 AGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFL 289 (371)
T ss_pred HHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHC
Confidence 9999996 99999999999999999988888777521 24789999999999 999888999999999999999999
Q ss_pred CCceeecCCccc-ccChh---HHHHHHHcCCceEeeCCccccC----------CCCChhHHHHHHHHcCCCcCCCCCCc
Q 020848 237 PKAMVRLSAGRV-RFSMP---EQALCFLAGANSIFTGEKLLTT----------PNNDFDADQLMFKVLGLTPKAPSFHE 301 (320)
Q Consensus 237 p~~~i~~~~g~~-~~~~~---~~~~~~~~Gan~~~~~~~~~~~----------~~~~~~~~~~~i~~~G~~p~~~~~~~ 301 (320)
|+..|++++|++ .+.+. .+...+.+| |+.++|+ |+|+ ++++++++++||+++||+|+.-|.++
T Consensus 290 P~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~-y~~~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~~~~~~~~ 366 (371)
T PRK09240 290 PDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGG-YADDHKELEQFEISDDRSVEEVAAALRAKGLQPVWKDWDS 366 (371)
T ss_pred cccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCC-cCCCCCCcCCccCCCCCCHHHHHHHHHHCCCeeccchhhh
Confidence 999999999885 33321 223456665 8888887 8877 68999999999999999998877653
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=308.48 Aligned_cols=282 Identities=18% Similarity=0.199 Sum_probs=235.1
Q ss_pred chhHHhhhccCCCeeEEEEEeec-ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSI-KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~-~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
|+.+ |++++|+.|+++.++++ +||.|..+|.||+|... ++.+.++.+++|||++.++.+ ..|+++|+|++|.++
T Consensus 52 A~~i--R~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~--~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p 126 (370)
T PRK05926 52 ADLI--RANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAK--PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFP 126 (370)
T ss_pred HHHH--HHHhcCCeEEEEEeeeeecCCCCCCCCCccccccC--CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCC
Confidence 4444 45678999999999886 89999999999998753 233456669999999999988 689999999987543
Q ss_pred CCCCchhHHHHHHHHHHhhhc--CceEEEeC-----------CCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCC
Q 020848 85 TIGRKTNFNQILEYVKDIRDM--GMEVCCTL-----------GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITT 149 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~-----------g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~ 149 (320)
. ..++++.++++.+|+. ++.+.... +..+++.+++|+++|++++.+ +.|+. ++.++.++++
T Consensus 127 ~----~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~ 202 (370)
T PRK05926 127 S----CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPG 202 (370)
T ss_pred C----CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCC
Confidence 2 3568889999999854 46544322 346788899999999999997 59999 8899988875
Q ss_pred C-CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCC----CCCC
Q 020848 150 R-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQD----QKPV 220 (320)
Q Consensus 150 ~-~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~----~~~~ 220 (320)
. +.++|+++++.++++|+++++++|+|+||+++|+++++..+++++ .++++|.+|+|+ ++|++.. .+..
T Consensus 203 ~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~ 280 (370)
T PRK05926 203 RLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSR 280 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHHHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCC
Confidence 4 789999999999999999999999999999999999999999998 789999999994 4888753 2357
Q ss_pred CHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcC
Q 020848 221 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLG 291 (320)
Q Consensus 221 ~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G 291 (320)
+..+.++++|++|+++++ +..+...|..++....+.++.+|||++ +.++++.... ..+++++.++|+++|
T Consensus 281 ~~~~~lr~~AvaRl~l~n-~~~iqa~w~~~G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g 359 (370)
T PRK05926 281 HSIPPASIIAVARLFLDN-FPNIKALWNYLGIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQG 359 (370)
T ss_pred ChHHHHHHHHHHHHhcCC-CcccccCchhcCHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcC
Confidence 788899999999999987 566778898888778889999999998 4455554433 357899999999999
Q ss_pred CCcCCCCC
Q 020848 292 LTPKAPSF 299 (320)
Q Consensus 292 ~~p~~~~~ 299 (320)
++|++||+
T Consensus 360 ~~p~~rd~ 367 (370)
T PRK05926 360 RIPCLTNS 367 (370)
T ss_pred CCceecCC
Confidence 99999987
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=306.53 Aligned_cols=287 Identities=16% Similarity=0.125 Sum_probs=236.1
Q ss_pred HHhhhccC-CCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 9 LLFSISSS-MEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 9 ~~~r~~~~-~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
.+.|++++ |+.|+++ ..++ +|+.|+.+|.||+|+.... ....| .+++|||++.++.+.+.|+++++|+||.++.
T Consensus 29 ~~iR~~~~~G~~V~~i~n~~i~-~Tn~C~~~C~fCaf~~~~~-~~~~y-~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~ 105 (350)
T PRK05927 29 DSLRKQRYPQNTVTYVLDANPN-YTNICKIDCTFCAFYRKPH-SSDAY-LLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ 105 (350)
T ss_pred HHHHHHHcCCCeEEEEcccCCc-cchhhhcCCccCCccCCCC-Ccccc-ccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 34455666 7999854 3444 5999999999999986432 22334 5999999999999999999999999876532
Q ss_pred CCCchhHHHHHHHHHHhhhc--Cce-----------EEEeCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCC
Q 020848 86 IGRKTNFNQILEYVKDIRDM--GME-----------VCCTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR 150 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~--~~~-----------i~~~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~ 150 (320)
..++++.++++.+|+. ++. ++.+.|.++++.+++|+++|++++.. ++|++ +++++.+++++
T Consensus 106 ----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k 181 (350)
T PRK05927 106 ----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKK 181 (350)
T ss_pred ----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCC
Confidence 4578899999999842 342 24557999999999999999999998 89999 78888888766
Q ss_pred -CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCCC--CCCCHH
Q 020848 151 -SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQ--KPVEIW 223 (320)
Q Consensus 151 -~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~~--~~~~~~ 223 (320)
++++|+++++.|++.|+++++++|+|+|||++|+.+++..+++++ .+...|..|+|+ ++||++.. ++++.+
T Consensus 182 ~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~ 259 (350)
T PRK05927 182 MGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFYSFIPWSYKPGNTALGRRVPHQASPE 259 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCeeeeeecCcCCCCCccccCCCCCCCHH
Confidence 579999999999999999999999999999999999999999998 455678888887 58998753 268999
Q ss_pred HHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEe---eCCccccCCC----CChhHHHHHHHHcCCCcCC
Q 020848 224 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTTPN----NDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 224 e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~----~~~~~~~~~i~~~G~~p~~ 296 (320)
+.++++|++|+++|+.. .+.+.|...+....+.++.+|||++. +.+.+....+ .+.+++.++|+++|++|++
T Consensus 260 e~Lr~iAv~Rl~lp~~~-~i~~~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~~~~~~l~~~i~~~G~~~~~ 338 (350)
T PRK05927 260 LYYRILAVARIFLDNFD-HIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQSSEEEICAMILSEGFIPVE 338 (350)
T ss_pred HHHHHHHHHHHhCCCCC-cccCCccccCHHHHHHHHhCCCccccCCCccceeeccCCCCCcCCHHHHHHHHHHcCCCeee
Confidence 99999999999999744 45667887777777889999999983 4454544443 3589999999999999999
Q ss_pred CCCCcCCcc
Q 020848 297 PSFHEGEAN 305 (320)
Q Consensus 297 ~~~~~~~~~ 305 (320)
|++.|+.+.
T Consensus 339 R~~~Y~~~~ 347 (350)
T PRK05927 339 RNTFYRPIS 347 (350)
T ss_pred ecCCCcccc
Confidence 999999874
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=307.83 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=235.3
Q ss_pred hHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 8 TLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.+.|++++|++|+++.+++ .|+.|+++|.||+++... ..++ ..+++|||.+.++.+.+.|+++|+++||..+..
T Consensus 59 A~~ir~~~~G~~v~l~~~i~-~Tn~C~~~C~yC~~s~~~--~~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~- 133 (366)
T TIGR02351 59 AKKLTRKRFGNTISLFTPLY-LSNYCSNKCVYCGFSMSN--KIKR-KKLNEEEIEREIEAIKKSGFKEILLVTGESEKA- 133 (366)
T ss_pred HHHHHHHHcCCEEEEEeeee-ECccccCCCCcCCCCCCC--CCcc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-
Confidence 44466678899999999999 899999999999997643 2334 558999999999999999999999997654322
Q ss_pred CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhC---CCCCHHHHHHHHHHHH
Q 020848 88 RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKII---TTRSYDERLETLKHVR 163 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~---~~~~~~~~l~~i~~a~ 163 (320)
..++++.++++.+++....+.+..+.++.+.+++|+++|++++++++||+ ++.|+.++ +++++++++++++.++
T Consensus 134 --~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~ 211 (366)
T TIGR02351 134 --AGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAA 211 (366)
T ss_pred --CCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHH
Confidence 35788999999998542222334457999999999999999999999999 99999988 5779999999999999
Q ss_pred HcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCC----CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 164 EAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 164 ~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
++|++ +++++|+|++++.+|..+++..+++++.. ..+|+++.++|.+| ++....++++.+++++++.+|+++|+
T Consensus 212 ~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~ 290 (366)
T TIGR02351 212 KAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPF 290 (366)
T ss_pred HcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcc
Confidence 99998 99999999999999998888777776531 26899999999999 99888889999999999999999999
Q ss_pred ceeecCCccc-ccCh---hHHHHHHHcCCceEeeCCccccCCC----------CChhHHHHHHHHcCCCcCCCCCC
Q 020848 239 AMVRLSAGRV-RFSM---PEQALCFLAGANSIFTGEKLLTTPN----------NDFDADQLMFKVLGLTPKAPSFH 300 (320)
Q Consensus 239 ~~i~~~~g~~-~~~~---~~~~~~~~~Gan~~~~~~~~~~~~~----------~~~~~~~~~i~~~G~~p~~~~~~ 300 (320)
..|++++|++ .+.. +.+...+.+ +|+.++|. |+|+.+ ++++++++||+++||+|+.-|-+
T Consensus 291 ~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~-y~~~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~~~~~~~ 364 (366)
T TIGR02351 291 VEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGG-YSSEKKGLEQFEISDERSVAEVEEDLRSKGLQPVWKDWD 364 (366)
T ss_pred cccEEecCCCHHHHHHHHhhcceeecc-CcccCCCC-cCCCCCCcCcccCCCCCCHHHHHHHHHHCCCeecccccc
Confidence 9999999885 3321 222333555 67777777 888777 99999999999999999877543
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=294.12 Aligned_cols=280 Identities=21% Similarity=0.319 Sum_probs=237.0
Q ss_pred hhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 7 TTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 7 ~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
.+.+.|++++|++|+++.+++ .|++|+++|.||+++.... ...++. +++|+++++++.+.+.|++.|+|+||..+.
T Consensus 24 ~A~~~r~~~~g~~v~~~~~i~-~s~gC~~~C~fC~~~~~~~-~~~r~~-ls~eei~~~~~~~~~~g~~~i~l~gG~~~~- 99 (323)
T PRK07094 24 AADEVRKKYVGDEVHLRGLIE-FSNYCRNNCLYCGLRRDNK-NIERYR-LSPEEILECAKKAYELGYRTIVLQSGEDPY- 99 (323)
T ss_pred HHHHHHHHhCCCEEEEEEEEE-ECCCCCCCCEeCCcccCCC-CCcCcC-CCHHHHHHHHHHHHHCCCCEEEEecCCCCC-
Confidence 345566788999999999999 5999999999999875321 223344 799999999999999999999998765322
Q ss_pred CCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHH
Q 020848 87 GRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE 164 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~ 164 (320)
...+++.++++.+++ .++.+..+.|.++++.++.|+++|++++.+++||. +++++.+++++++++++++++.+++
T Consensus 100 ---~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~ 176 (323)
T PRK07094 100 ---YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKE 176 (323)
T ss_pred ---CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 245788999999986 57777788899999999999999999999999999 9999999999999999999999999
Q ss_pred cCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 165 AGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 165 ~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
+|+.+.+++|+|+ |||.+++.++++++++++ ++.+++++|+|.||||+.+.++++.++.+++++.+|+++|+..++.
T Consensus 177 ~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~ 254 (323)
T PRK07094 177 LGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPA 254 (323)
T ss_pred cCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcc
Confidence 9999999999999 999999999999999998 7899999999999999999888999999999999999999988888
Q ss_pred CCcccccChhHHHHHHHcCCceEeeC---Cc----cccCCC-C--------ChhHHHHHHHHcCCCcC
Q 020848 244 SAGRVRFSMPEQALCFLAGANSIFTG---EK----LLTTPN-N--------DFDADQLMFKVLGLTPK 295 (320)
Q Consensus 244 ~~g~~~~~~~~~~~~~~~Gan~~~~~---~~----~~~~~~-~--------~~~~~~~~i~~~G~~p~ 295 (320)
+++|..+.+..+..++.+|||++++. .. |.--++ . ....+...++.+|++|.
T Consensus 255 ~~~~~~~~~~~~~~~l~~Gan~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (323)
T PRK07094 255 TTALGTLNPDGREKGLKAGANVVMPNLTPGEYRKLYSLYPGKICTGEEAAECRECIERRIESIGRTVG 322 (323)
T ss_pred cCCccccCchhHHHHHHcCCceecCCCCchhhCcccccCCCCCCCCccHHHHHHHHHHHHHHcCCccC
Confidence 88888888877789999999999653 11 211111 1 12233457888998775
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=296.95 Aligned_cols=277 Identities=20% Similarity=0.282 Sum_probs=224.8
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC------------Cc
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RK 89 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g------------e~ 89 (320)
.+..++ +||+|+.+|.||+|+... +...++.+++|+|++.++.+.+.|++++++++|.++... -.
T Consensus 4 ~n~~i~-~tn~C~~~C~fCaf~~~~--g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 4 RNVFIP-LTRLCRNRCGYCTFRRPP--GELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYD 80 (322)
T ss_pred ceEEec-cccCcCCCCccCCccccC--CCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCc
Confidence 345777 799999999999998642 334456699999999999999999999999988655331 00
Q ss_pred hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhh----CCCCCHHHHHHHHHHHH
Q 020848 90 TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI----ITTRSYDERLETLKHVR 163 (320)
Q Consensus 90 ~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i----~~~~~~~~~l~~i~~a~ 163 (320)
...+++.++++.+++ .++..+++.|.++++.++.|+++|++ +.+++||+ +.++..+ +++++++++++.++.++
T Consensus 81 ~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 81 STLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred cHHHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 124678888888884 37777889999999999999999986 58889998 6655443 44567899999999999
Q ss_pred HcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCce
Q 020848 164 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 240 (320)
Q Consensus 164 ~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~ 240 (320)
+.|+++++++|+|+|||++|+.+++..+++++. ++..+.+++|+|.||||++..++++..+.++++|++|+++|+ .
T Consensus 160 ~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~-~ 238 (322)
T TIGR03550 160 RLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP-D 238 (322)
T ss_pred HcCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC-C
Confidence 999999999999999999999999999999863 245677899999999999888889999999999999999965 2
Q ss_pred eecCCcccccChhHHHHHHHcCCceE-----eeCCccccCCC--CChhHHHHHHHHcCCCcCCCCCCcCCcc
Q 020848 241 VRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTPN--NDFDADQLMFKVLGLTPKAPSFHEGEAN 305 (320)
Q Consensus 241 i~~~~g~~~~~~~~~~~~~~~Gan~~-----~~~~~~~~~~~--~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 305 (320)
.++..+| .+....+..+|.+|||++ ++++ +.++.+ .+.+++++||+++|++|++|+++|++--
T Consensus 239 ~~I~~~~-~l~~~~~~~~L~~Gand~~gt~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~p~~R~t~y~~~~ 308 (322)
T TIGR03550 239 ISIQVPP-NLNREDYRLLLDAGIDDWGGVSPVTPD-HVNPEAPWPEIDELARATEEAGFTLKERLPVYPEYV 308 (322)
T ss_pred CeeecCC-ccChHHHHHHHhcCCccccCcccCchh-hcCCCCCCCCHHHHHHHHHHcCCCcccccCccHhhh
Confidence 3444446 444435789999999994 4455 444333 6899999999999999999999998754
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=293.28 Aligned_cols=273 Identities=19% Similarity=0.284 Sum_probs=226.4
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
.+..|+ +|++|+.+|.||+++.... . ...+.+++|+|++.++.+.+.|+++|+|+||..+. ...+.+.++++.
T Consensus 5 ~n~~i~-~T~~C~~~C~FC~~~~~~~-~-~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~----~~~~~~~~i~~~ 77 (309)
T TIGR00423 5 VNRNIN-FTNICVGKCKFCAFRAREK-D-KDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQ----LDIEYYEELFRA 77 (309)
T ss_pred ceeeec-CccccccCCccCCCccCCC-C-CCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHH
Confidence 345666 8999999999999986432 2 23345999999999999999999999999765432 245778888888
Q ss_pred hhhc--CceEE-----------EeCCCCCHHHHHHHHHhccCeec-cCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHc
Q 020848 102 IRDM--GMEVC-----------CTLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREA 165 (320)
Q Consensus 102 ~k~~--~~~i~-----------~~~g~l~~e~l~~L~~aGld~v~-i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~ 165 (320)
+|+. ++.+. .+.|.++++.+++|+++|++++. ++.|+. +++++.+++++ ++++++++++.++++
T Consensus 78 Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 78 IKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred HHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 8854 34332 24577789999999999999996 599999 89999997754 899999999999999
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCC-CCCC--CCCCHHHHHHHHHHHHHhCCC
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTP-LQDQ--KPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~-~~~~--~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+++++++|+|++|+.+|+.+++..+++++ .++..|..|+|.| +|| ++.. ++++..+.++++|++|+++|
T Consensus 158 Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp- 234 (309)
T TIGR00423 158 GIPTTATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN- 234 (309)
T ss_pred CCCceeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC-
Confidence 999999999999999999999999999998 6778888888854 888 7654 67899999999999999999
Q ss_pred ceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCcCCCCCCcCCc
Q 020848 239 AMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPKAPSFHEGEA 304 (320)
Q Consensus 239 ~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 304 (320)
...+++++|..+++..+..+|.+|||++ +..+.+.... .++.++++++|+++|++|++|++.|+.+
T Consensus 235 ~~~~i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~~y~~~ 309 (309)
T TIGR00423 235 NIRNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDTLYNIL 309 (309)
T ss_pred CCccceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCCCCCcC
Confidence 4666888898888777789999999998 4455444432 4679999999999999999999999864
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=318.93 Aligned_cols=287 Identities=17% Similarity=0.223 Sum_probs=240.0
Q ss_pred HhhhccCCCeeEE--EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 10 LFSISSSMEEVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 10 ~~r~~~~~~~v~~--~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
..|++++|+.|++ +..|| +||.|..+|.||+|++.. ...+.|. +++|||++.++.+.+.|+++|+++||.++.
T Consensus 512 ~iR~~~~G~~Vt~vvn~~In-~TN~C~~~C~FCafs~~~-~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~-- 586 (843)
T PRK09234 512 DLRRDVVGDDVTYVVNRNIN-FTNICYTGCRFCAFAQRK-TDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGIHPE-- 586 (843)
T ss_pred HHHHHhcCCeEEEEEeecee-cCCCCCCCCcccccccCC-CCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCCCCC--
Confidence 3445678999986 45666 699999999999998753 3434555 899999999999999999999999875442
Q ss_pred CchhHHHHHHHHHHhhhc--CceEE-----------EeCCCCCHHHHHHHHHhccCeeccC-cccc-HHHHhhhCCCC-C
Q 020848 88 RKTNFNQILEYVKDIRDM--GMEVC-----------CTLGMLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIITTR-S 151 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~~--~~~i~-----------~~~g~l~~e~l~~L~~aGld~v~i~-let~-~~~~~~i~~~~-~ 151 (320)
...+++.++++.+|+. ++.++ .+.|...++.+++|+++|++++..+ -+.+ +++++.+++++ +
T Consensus 587 --~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~ 664 (843)
T PRK09234 587 --LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLP 664 (843)
T ss_pred --cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCC
Confidence 3467888999999853 45542 3457888999999999999999874 4555 67888888754 8
Q ss_pred HHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCC----CCCCCCHH
Q 020848 152 YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQ----DQKPVEIW 223 (320)
Q Consensus 152 ~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~----~~~~~~~~ 223 (320)
.++|+++++.|++.|+++++++|+|++|+++|+.+++.++++++ .++.+|..|+|+ ++||+. ..+.++..
T Consensus 665 ~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq--~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~ 742 (843)
T PRK09234 665 TAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQ--DRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHR 742 (843)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcC--cccCCeeeeeeccccCCCCCcccccCCCCCCCHH
Confidence 88999999999999999999999999999999999999999998 678899999994 478773 23568999
Q ss_pred HHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCc
Q 020848 224 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 224 e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p 294 (320)
+.++++|++|+++|+.+++++++|.++++...+.+|.+|||++ ++++.+...+ .++.+++.++|+++|+.|
T Consensus 743 e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p 822 (843)
T PRK09234 743 ENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRPA 822 (843)
T ss_pred HHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 9999999999999988889999999888887789999999998 4455454322 357899999999999999
Q ss_pred CCCCCCcCCcc
Q 020848 295 KAPSFHEGEAN 305 (320)
Q Consensus 295 ~~~~~~~~~~~ 305 (320)
++|+++|+.+.
T Consensus 823 ~~R~t~Y~~~~ 833 (843)
T PRK09234 823 RQRTTLYGPVA 833 (843)
T ss_pred eeecCCCCccc
Confidence 99999999976
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=290.93 Aligned_cols=294 Identities=20% Similarity=0.276 Sum_probs=245.0
Q ss_pred chhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+-+.+.|++++|++|.++.+|+ .||.|..+|.||+|+... ....++ .+++|||+++++.+.+.|+++++|++|..++
T Consensus 68 ~~A~~ir~~~~Gn~I~lfapLy-iSN~C~n~C~YCgfs~~n-~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~ 144 (469)
T PRK09613 68 EAAREIKEKIYGNRIVLFAPLY-ISNYCVNNCVYCGFRRSN-KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAGEDPP 144 (469)
T ss_pred HHHHHHHHHHcCCEEEEEEecc-ccCCCCCCCccCCCccCC-CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 3445566788999999999999 699999999999998653 234444 4899999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhhc----C-c-eEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHH
Q 020848 86 IGRKTNFNQILEYVKDIRDM----G-M-EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDER 155 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~----~-~-~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~ 155 (320)
. ..++++.++++.+++. + + .+.++.|.++.+.+++|+++|++++.+.+||+ +++|+.+++ +++|+++
T Consensus 145 ~---~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~R 221 (469)
T PRK09613 145 N---CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWR 221 (469)
T ss_pred C---CCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHH
Confidence 2 3578888998888853 2 3 47888899999999999999999999999999 999999876 5799999
Q ss_pred HHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcC----CCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 156 LETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATL----PTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 156 l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l----~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
+++++.|+++|++ +++++++|++++.+|...++..+++| +.+++.|++..|.|.+|||+++.+ +++.+++++++
T Consensus 222 l~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lrii 301 (469)
T PRK09613 222 LTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIV 301 (469)
T ss_pred HHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHH
Confidence 9999999999998 99999999999999999988888777 333778999999999999997664 58999999999
Q ss_pred HHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC-----------------CccccCCCCChhHHHHHHHHcCC
Q 020848 230 ATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG-----------------EKLLTTPNNDFDADQLMFKVLGL 292 (320)
Q Consensus 230 a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~G~ 292 (320)
+++|+++|...+.+++ ++. +..+...+..|++.+..| .+|...+.++++|+++.|.+.||
T Consensus 302 A~~RL~~P~~~I~lSt-RE~--~~~r~~~~~~gvt~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~ 378 (469)
T PRK09613 302 AILRLAVPYTGMILST-RES--AELRREVLELGVSQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGY 378 (469)
T ss_pred HHHHHHCCCCCceeec-CCC--HHHHHHHHhhcceeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCC
Confidence 9999999999998876 332 344555666777766322 12444567899999999999999
Q ss_pred CcCCCCCCcCCccccc
Q 020848 293 TPKAPSFHEGEANVSE 308 (320)
Q Consensus 293 ~p~~~~~~~~~~~~~~ 308 (320)
.|+.=+-=|+.-||-+
T Consensus 379 ~p~~ctacyr~grtg~ 394 (469)
T PRK09613 379 IPSFCTACYRLGRTGD 394 (469)
T ss_pred eEEEeeccccCCCchh
Confidence 9998888888887765
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=307.61 Aligned_cols=293 Identities=18% Similarity=0.212 Sum_probs=244.4
Q ss_pred hhHHhhhccCCC-----eeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEe
Q 020848 7 TTLLFSISSSME-----EVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79 (320)
Q Consensus 7 ~~~~~r~~~~~~-----~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~ 79 (320)
-+.+.|++++|+ .|+++ .+++ +||.|..+|.||+|+.... . ..+..+++|||++.++.+.+.|+++++|+
T Consensus 49 ~A~~vR~~~~G~~~~~~~Vty~~n~~In-~Tn~C~~~C~YCaF~~~~~-~-~~~~~ls~eEIl~~a~~~~~~G~~e~l~t 125 (843)
T PRK09234 49 SAARVRDAGLGAAGRPGVVTYSRKVFIP-LTRLCRDRCHYCTFATVPG-K-LEAAYLSPDEVLDIARAGAAAGCKEALFT 125 (843)
T ss_pred HHHHHHHHHcCCcccCceEEEEeEEEec-CCCCCCCCCCcCCCccCCC-C-CccccCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 344556677898 89886 5777 6999999999999986433 2 34566999999999999999999999999
Q ss_pred cccCCCCC------------CchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhh
Q 020848 80 AAWRDTIG------------RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSK 145 (320)
Q Consensus 80 ~g~~~~~g------------e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~ 145 (320)
+|.++... -...++++.++++.+|+ .++..+++.|.++.++++.|+++|++ +.+.+|+. +++|+.
T Consensus 126 ~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~ 204 (843)
T PRK09234 126 LGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEE 204 (843)
T ss_pred cCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHh
Confidence 98765421 01246899999999984 68878899999999999999999997 78999998 888743
Q ss_pred ------hCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCCCCCC
Q 020848 146 ------IITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 146 ------i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt~~~~ 216 (320)
+++++.+++++++++.|+++|+++++++|+|+|||.+|+.+++..+++++. +++.+.+++|.|.+||||++
T Consensus 205 ~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~ 284 (843)
T PRK09234 205 KGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAG 284 (843)
T ss_pred hcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCC
Confidence 445678999999999999999999999999999999999999999999853 37789999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE-----eeCCccc-cCCCCChhHHHHHHHHc
Q 020848 217 QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLL-TTPNNDFDADQLMFKVL 290 (320)
Q Consensus 217 ~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~-----~~~~~~~-~~~~~~~~~~~~~i~~~ 290 (320)
.++++.+++++++|++|+++|+. +++...|..+++.....++.+|||++ ++++... ....++.+++.++++++
T Consensus 285 ~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~~~~~~~L~~GanD~GG~~~~~~d~~~p~~~~~~~~~l~~~~~~a 363 (843)
T PRK09234 285 VPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSGDECAALLGAGIDDWGGVSPLTPDHVNPERPWPQLDELAAVTAEA 363 (843)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCHHHHHHHHhcCCCcccchhhhHhhccCccCCCCCHHHHHHHHHHc
Confidence 88999999999999999999763 46666677776666788999999998 2333111 12346899999999999
Q ss_pred CCCcCCCCCCcCCc
Q 020848 291 GLTPKAPSFHEGEA 304 (320)
Q Consensus 291 G~~p~~~~~~~~~~ 304 (320)
||.|++|++.|+..
T Consensus 364 G~~~~eR~t~Y~~~ 377 (843)
T PRK09234 364 GFTLVERLTAYPEY 377 (843)
T ss_pred CCCcccccCccHhH
Confidence 99999999999885
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=282.77 Aligned_cols=296 Identities=17% Similarity=0.191 Sum_probs=225.5
Q ss_pred cchhHHhhhccCCCeeE--EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Q 020848 5 LSTTLLFSISSSMEEVQ--QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAW 82 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~--~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~ 82 (320)
+|+.++.+ +..++.|+ ++.+|| +||.|..+|.||+|+.... . +..+.|++|||.+.++.+.+.|+++++|+||.
T Consensus 41 ~A~~~r~~-~~~~~~vtyv~n~~in-~TN~C~~~C~fCaF~~~~~-~-~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~ 116 (370)
T COG1060 41 LADKARRR-KRVGDGVTYVVNRNIN-YTNICVNDCTFCAFYRKPG-D-PKAYTLSPEEILEEVREAVKRGITEVLIVGGE 116 (370)
T ss_pred HHHHHHHh-hccCCcEEEEEeecCC-cchhhcCCCCccccccCCC-C-ccccccCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 45666622 23455554 567887 8999999999999987542 2 23445999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHhhhc----Cc--------eEEEeC-CCCCHHHHHHHHHhccCeeccCcccc-HH-HHhhhC
Q 020848 83 RDTIGRKTNFNQILEYVKDIRDM----GM--------EVCCTL-GMLEKHQAIELKKAGLTAYNHNLDTS-RE-FYSKII 147 (320)
Q Consensus 83 ~~~~ge~~~~~~l~~~i~~~k~~----~~--------~i~~~~-g~l~~e~l~~L~~aGld~v~i~let~-~~-~~~~i~ 147 (320)
++..+ ++++.++++.+|+. .+ ...... +...+|.+++|+++|+|.+..+.... .+ +.+.++
T Consensus 117 ~p~~~----~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~ 192 (370)
T COG1060 117 HPELS----LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC 192 (370)
T ss_pred CCCcc----hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC
Confidence 76543 34666666666641 11 111223 34456669999999999999988777 54 445555
Q ss_pred C-CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCC-CCCCCCCCCH
Q 020848 148 T-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGT-PLQDQKPVEI 222 (320)
Q Consensus 148 ~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt-~~~~~~~~~~ 222 (320)
+ +.+++.|++.++.|+++|++...++++|++|+.+|+.+++..+++++. +...+.+.+|.|.+++ +....+..+.
T Consensus 193 p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~ 272 (370)
T COG1060 193 PPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASL 272 (370)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCH
Confidence 4 459999999999999999999999999999999999999999998864 2334444455555555 5555667899
Q ss_pred HHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEe---eCCccccC------CCCChhHHHHHHHHcCCC
Q 020848 223 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTT------PNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 223 ~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~------~~~~~~~~~~~i~~~G~~ 293 (320)
.+++++++++|++++...-.+.+.|...+......++.+|||++- ..+..... ..++++++.++|+++|++
T Consensus 273 ~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~ 352 (370)
T COG1060 273 EQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRI 352 (370)
T ss_pred HHHHHHHHHHHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcccccccccccccCCCCCHHHHHHHHHHcCCC
Confidence 999999999999999766556677888777667889999999983 23333322 257899999999999999
Q ss_pred cCCCCCCcCCccccc
Q 020848 294 PKAPSFHEGEANVSE 308 (320)
Q Consensus 294 p~~~~~~~~~~~~~~ 308 (320)
|++|++.|++..+-+
T Consensus 353 p~~Rdt~Y~~~~~~~ 367 (370)
T COG1060 353 PVERDTLYRILYVGD 367 (370)
T ss_pred eeeeccccceeeccc
Confidence 999999999987654
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=281.59 Aligned_cols=280 Identities=21% Similarity=0.329 Sum_probs=224.6
Q ss_pred CCCeeEE--EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh--
Q 020848 16 SMEEVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-- 91 (320)
Q Consensus 16 ~~~~v~~--~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-- 91 (320)
.|+.|++ +..++ +|++|+.+|.||+++... + ....+++|+|++.++.+.+.|+++++|+||..+... ...
T Consensus 4 ~~~~vt~~~~~~i~-~Tn~C~~~C~fC~~~~~~--~--~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~-~~~~~ 77 (336)
T PRK06245 4 MSKIVTYSRNVFIP-LTYECRNRCGYCTFRRDP--G--QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDES-YERIK 77 (336)
T ss_pred CCCeeEeecceeee-ccccccCCCccCCCcCCC--C--ccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccc-hhhhh
Confidence 3788876 45666 799999999999987532 2 223699999999999999999999999988654332 011
Q ss_pred -------HHHHHHHHHHhh----hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhh---CCCCCHHHHH
Q 020848 92 -------FNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI---ITTRSYDERL 156 (320)
Q Consensus 92 -------~~~l~~~i~~~k----~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i---~~~~~~~~~l 156 (320)
+.++.+.++.+. +.++...++.+.++++.++.|+++|+. +.+.+|+. +.+++.+ ++++++++++
T Consensus 78 ~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l 156 (336)
T PRK06245 78 EQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRL 156 (336)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHH
Confidence 244555554443 335556788899999999999999864 57788999 7777555 5577899999
Q ss_pred HHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 020848 157 ETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 157 ~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
++++.+++.|+++++++++|++|+.+|+.+++..+++++. ++..+.+++|+|.++|++...+.++.++.+++++.+|
T Consensus 157 ~~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 157 ETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred HHHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988863 2567889999999999998777889999999999999
Q ss_pred HhCCCceeecCCcccccChhHHHHHHHcCCceE-----eeCCccccCC--CCChhHHHHHHHHcCCCcCCCCCCcCCcc
Q 020848 234 IVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTP--NNDFDADQLMFKVLGLTPKAPSFHEGEAN 305 (320)
Q Consensus 234 ~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~-----~~~~~~~~~~--~~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 305 (320)
+++|+. +.+..++ .+....+..+|.+|||++ ..++ ++++. +++.++++++|+++|++|++|++.|+++-
T Consensus 237 l~l~~~-i~i~~~~-~~~~~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~~y~~~~ 312 (336)
T PRK06245 237 LILPPD-ISIQVPP-NLNRDTGLLLLDAGADDLGGISPVTKD-YVNPEYPWPDIEELREILEEAGWPLKERLPVYPKYI 312 (336)
T ss_pred HHCCCC-ceEecCC-ccchHHHHHHHhcCCccccCCccCCCc-eeCCCCCCCCHHHHHHHHHHcCCCcccccCcchhhc
Confidence 999763 3454443 555566678899999998 3445 55544 57899999999999999999999999965
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=274.08 Aligned_cols=268 Identities=17% Similarity=0.210 Sum_probs=220.9
Q ss_pred cchhHHhhhccCCCeeEEEEEeecccCCCC--CCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecc
Q 020848 5 LSTTLLFSISSSMEEVQQCTLLSIKTGGCS--EDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAA 81 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~~~~~l~~~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g 81 (320)
.+-+-+.|+++||++|+++.+++ .|++|+ .+|.||+++..... ..+.+..+++|+|+++++.+.+.|++.++++||
T Consensus 10 ~~~A~~ir~~~fG~~v~l~~~l~-~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG 88 (350)
T PRK06267 10 SIKAFKLTEKHHGNIVSLERALF-LGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGG 88 (350)
T ss_pred HHHHHHHHHHHcCCeEEEEEeee-ecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34455567788999999999999 699999 89999999864221 112345589999999999999999987777765
Q ss_pred cCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHH
Q 020848 82 WRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETL 159 (320)
Q Consensus 82 ~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i 159 (320)
.. ...+++.++++.++.. +..++.+.|.++.+.+..++.+|+ .+++||. +++|+.++++++++++++++
T Consensus 89 ~~------~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l 159 (350)
T PRK06267 89 YG------YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEML 159 (350)
T ss_pred CC------CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHH
Confidence 32 2334555666665543 345677888888888877777765 4689999 89999999999999999999
Q ss_pred HHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 020848 160 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 160 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
+.++++|+++++++|+|+|++.+|+.++++++++++ ++.++++.|+|.||||+.+.++++.++++++++++|+++|+.
T Consensus 160 ~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~ 237 (350)
T PRK06267 160 LKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKI 237 (350)
T ss_pred HHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999998 789999999999999999988999999999999999999998
Q ss_pred eeecCCcccccChhHHHHHHHcCCceE----eeCCccccCCCCChhHHHHHH
Q 020848 240 MVRLSAGRVRFSMPEQALCFLAGANSI----FTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 240 ~i~~~~g~~~~~~~~~~~~~~~Gan~~----~~~~~~~~~~~~~~~~~~~~i 287 (320)
.+ ++++|.....+.+. .+.+|||.+ +.|. |+|+.|++++++++--
T Consensus 238 ~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~-ylt~~g~~~~~~~~~~ 286 (350)
T PRK06267 238 KI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSM-YGTKEGKRVENEIRWT 286 (350)
T ss_pred Cc-chhhHhHhcchhhH-HhhcCcceeeccchhcc-CcccCCCCHHHHHHHh
Confidence 87 55667533333434 677999999 6787 9999999999987654
|
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=195.60 Aligned_cols=238 Identities=20% Similarity=0.282 Sum_probs=185.1
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||..+.. .-++ .|..||++|.||...... ...++...+|+|||.+.++.+.+.|++.|-|+| |||+..+++
T Consensus 6 ~gR~~~~-LRiS-vTdrCNfrC~YCm~eg~~-~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG------GEPllR~dl 76 (322)
T COG2896 6 FGRPVRY-LRIS-VTDRCNFRCTYCMPEGPL-AFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG------GEPLLRKDL 76 (322)
T ss_pred cCCEece-EEEE-EecCcCCcccccCCCCCc-ccCcccccCCHHHHHHHHHHHHHcCcceEEEeC------CCchhhcCH
Confidence 4556554 2334 799999999999876522 233444569999999999999999999997766 679999999
Q ss_pred HHHHHHhhhcCce-E-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 96 LEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 96 ~~~i~~~k~~~~~-i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
.++++.+++.++. + .+|||.+.+..+..|++||+++|++|+||. ++.|.++.+...++++++.|+.|.++|+. +++
T Consensus 77 ~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 77 DEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 9999999976654 4 567999999999999999999999999999 99999999877899999999999999996 999
Q ss_pred eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC-CCCCCCCCCCHHHHHHHHHHHHHh--------CCCceee
Q 020848 172 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG-TPLQDQKPVEIWEMIRMIATARIV--------MPKAMVR 242 (320)
Q Consensus 172 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g-t~~~~~~~~~~~e~~~~~a~~R~~--------~p~~~i~ 242 (320)
++++--|-|++++.++++++++.+ + .+.|..|+|... ..+......+.+++.+.+...-.. -|..++.
T Consensus 157 N~Vv~kgvNd~ei~~l~e~~~~~~--~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~ 233 (322)
T COG2896 157 NTVLMKGVNDDEIEDLLEFAKERG--A-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAKYFI 233 (322)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcC--C-ceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCceEEE
Confidence 999955889999999999999997 3 689999999874 222222356777777776541111 1123333
Q ss_pred cCCc-ccccChhHHHHHHHcCCceE
Q 020848 243 LSAG-RVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 243 ~~~g-~~~~~~~~~~~~~~~Gan~~ 266 (320)
...+ .+++..+... .||++||++
T Consensus 234 ~~~~~~ig~I~p~~~-~FC~~CnR~ 257 (322)
T COG2896 234 HPDGGEIGFIAPVSN-PFCATCNRL 257 (322)
T ss_pred eCCCcEEEEEcCCCc-hhhhhccee
Confidence 3333 4455555533 399999998
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=196.98 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=183.8
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
+|..+.. .-++ .|+.||++|.||....... .......++.|++.+.++.+.+.|++.|.|+| |||+..+++
T Consensus 53 ~gr~~~~-lris-vT~~CNlrC~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG------GEPllr~dl 123 (373)
T PLN02951 53 FGRRHNY-LRIS-LTERCNLRCQYCMPEEGVE-LTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG------GEPTLRKDI 123 (373)
T ss_pred CCCcccE-EEEE-EcCCcCcCCCCCCCCcCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcchhhH
Confidence 3555543 2345 6999999999997653211 11223458999999999988889999998876 578888899
Q ss_pred HHHHHHhhhc-Cce-E-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 020848 96 LEYVKDIRDM-GME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 170 (320)
Q Consensus 96 ~~~i~~~k~~-~~~-i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~ 170 (320)
.++++.+++. ++. + .+|||.+..+.+++|+++|+++|++|+|+. ++.|+.+++...+++++++|+.+++.|+ .+.
T Consensus 124 ~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vk 203 (373)
T PLN02951 124 EDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVK 203 (373)
T ss_pred HHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 9999999875 764 4 478998778889999999999999999999 9999999888889999999999999998 488
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH----Hh-----CCCcee
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR----IV-----MPKAMV 241 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R----~~-----~p~~~i 241 (320)
+++++-.|.|++++.++++++++++ ..+.+..|+|.+++++......+.+++++.+...- .. .|..++
T Consensus 204 in~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y 280 (373)
T PLN02951 204 VNCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNF 280 (373)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEE
Confidence 8887755899999999999999987 36889999999988765555567788777765421 11 112344
Q ss_pred ecC--CcccccChhHHHHHHHcCCceE
Q 020848 242 RLS--AGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 242 ~~~--~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++. .|.+++..+. ...||.+||++
T Consensus 281 ~~~~~~g~ig~I~~~-s~~FC~~CnRl 306 (373)
T PLN02951 281 RIDGHCGSVSFITSM-TEHFCAGCNRL 306 (373)
T ss_pred EECCCCeEEEEEcCC-cccccccCCeE
Confidence 443 2445666655 45699999998
|
|
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=189.68 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=168.4
Q ss_pred cchhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 5 LSTTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
.|++.+.+.++.++.+++.. .|++|+.+|.||.++. +. ...++++++++.++.+...|++++.|+|+..+
T Consensus 46 ~A~~~~~~~~~~~~~~tfv~----is~gC~~~C~FCa~~~----g~--~~~~~~eei~~~a~~~~~~G~keivitg~~~d 115 (290)
T PRK12928 46 EARCPNRGECYAQGTATFLI----MGSICTRRCAFCQVDK----GR--PMPLDPDEPERVAEAVAALGLRYVVLTSVARD 115 (290)
T ss_pred HhCCCcccccCCCCEEEEEE----ecccccCcCCCCCccC----CC--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCC
Confidence 57888888877677766522 3999999999999875 21 23389999999999999999999999887653
Q ss_pred CCCCchhHHHHHHHHHHhhhc--CceEE-EeCCCC--CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHH
Q 020848 85 TIGRKTNFNQILEYVKDIRDM--GMEVC-CTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETL 159 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~--~~~i~-~~~g~l--~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i 159 (320)
... ....+.+.++++.+++. ++.+. .++..+ ..+.++.|+++|.+.+++.+||.+++++.|+++.+++++++.+
T Consensus 116 Dl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l 194 (290)
T PRK12928 116 DLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLL 194 (290)
T ss_pred ccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHH
Confidence 321 12345677777777754 33432 244443 5788999999999999999998899999999999999999999
Q ss_pred HHHHHcC--CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 160 KHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 160 ~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
+.+++.| +.+++++|+|+|||++|+.++++++++++ ++.+.++.|.+-. ..|.. ...+++++..+...+..
T Consensus 195 ~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~--~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 195 ARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQ--RYWTPEEFEALGQIARE 269 (290)
T ss_pred HHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCcee--eccCHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999998 8999998887522 44443 34566665555555543
|
|
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=194.53 Aligned_cols=237 Identities=17% Similarity=0.216 Sum_probs=180.4
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||.++.. .-++ .|+.||++|.||..... ...+....++.||+.+.++.+.+.|++.|.|+| |||+..+++
T Consensus 9 ~gr~i~~-l~i~-iT~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tG------GEPllr~dl 78 (329)
T PRK13361 9 FGRTVTY-LRLS-VTDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTG------GEPLVRRGC 78 (329)
T ss_pred CCCccCe-EEEE-ecCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------cCCCccccH
Confidence 4666654 2344 69999999999975421 111234459999999999999899999998876 578888899
Q ss_pred HHHHHHhhhcC-c-e-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 020848 96 LEYVKDIRDMG-M-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 170 (320)
Q Consensus 96 ~~~i~~~k~~~-~-~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~ 170 (320)
.++++.+++.+ + . ..+|||.+..+.++.|+++|+++|++|+|+. ++.|+.+++..++++++++++.+++.|+ .+.
T Consensus 79 ~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 79 DQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 99999998653 4 3 3578898777899999999999999999999 9999999988899999999999999999 688
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC-CCCCCCCCHHHHHHHHHHHHHh--------CCCcee
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-LQDQKPVEIWEMIRMIATARIV--------MPKAMV 241 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~-~~~~~~~~~~e~~~~~a~~R~~--------~p~~~i 241 (320)
+++++-.++|.+++.++++++.+++ + .+.+..|+|..+.. +.....++.+++...+...... .|..++
T Consensus 159 in~v~~~g~N~~ei~~~~~~~~~~g--i-~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK13361 159 LNAVILRGQNDDEVLDLVEFCRERG--L-DIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYY 235 (329)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcC--C-eEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEE
Confidence 8887745899999999999999998 4 46788899987532 3223457788877766433111 122344
Q ss_pred ecC--CcccccChhHHHHHHHcCCceE
Q 020848 242 RLS--AGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 242 ~~~--~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++. .|.+++..+. ...||.+||++
T Consensus 236 ~~~~~~~~ig~I~~~-s~~fC~~Cnr~ 261 (329)
T PRK13361 236 TMADSPIHIGFISPH-SHNFCHECNRV 261 (329)
T ss_pred EECCCCeEEEEEcCC-CccccccCCeE
Confidence 443 2345555554 45689999998
|
|
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-24 Score=186.94 Aligned_cols=214 Identities=20% Similarity=0.266 Sum_probs=165.0
Q ss_pred cchhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 5 LSTTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
+|++.+.+..+.++.+++ +. +|++|+.+|.||.++.. . + ..+++|+|+++++.+.+.|++++.|+||...
T Consensus 39 ~a~~~~~~~~~~~~~~~f---i~-is~GC~~~C~FC~i~~~-r-~----~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~ 108 (289)
T PRK05481 39 EASCPNIGECWSRGTATF---MI-LGDICTRRCPFCDVATG-R-P----LPLDPDEPERVAEAVARMGLKYVVITSVDRD 108 (289)
T ss_pred hhCCCcchhccCCCeEEE---EE-ecccccCCCCCceeCCC-C-C----CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCC
Confidence 577777755556766654 22 69999999999998752 1 1 3389999999999999999999999988643
Q ss_pred CCCCchhHHHHHHHHHHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHH
Q 020848 85 TIGRKTNFNQILEYVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLK 160 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~ 160 (320)
... ....+.+.++++.+++. ++. +.........+.+.+|+++|.+.+.+.+++.+++++.|+++.+++++++.++
T Consensus 109 d~~-~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~~le~i~ 187 (289)
T PRK05481 109 DLP-DGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLK 187 (289)
T ss_pred Ccc-cccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHHHHHHhCCCCCHHHHHHHHH
Confidence 221 11235777777777752 333 3333333456899999999999999999998889999999999999999999
Q ss_pred HHHHc--CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CCCCCC-CCCHHHHHHHHHHHH
Q 020848 161 HVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQK-PVEIWEMIRMIATAR 233 (320)
Q Consensus 161 ~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~~~~~-~~~~~e~~~~~a~~R 233 (320)
.+++. |+.+++++|+|+|||++|+.++++++++++ ++.+.++.|.| |.. .+ +.+ ....+....+..++.
T Consensus 188 ~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~-pa~k~~-~v~~~~k~~r~~~l~~~~~ 260 (289)
T PRK05481 188 RAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ-PSRKHL-PVERYVTPEEFDEYKEIAL 260 (289)
T ss_pred HHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC-CccccC-CCCCcCCHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999998 89999999999 433 33 332 344455444444443
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=184.99 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=160.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
.++.|..+|.||+++... . ...++++|+.+.++.+.++|++.++++++.++... +...+.+.+.|+.+|+. +
T Consensus 155 lG~~CTr~C~FCaqstg~----~-p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~-D~ga~~~a~~I~~Ir~~~p~ 228 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSR----K-PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLP-DGGASHVARCVELIKESNPE 228 (398)
T ss_pred cCCCCCCCCCCCCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCC-hhhHHHHHHHHHHHHccCCC
Confidence 589999999999997522 1 24489999999999999999998877777654332 24578899999999963 5
Q ss_pred ceEEEeCCCC--CHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHHc---CCeeeeeEEEEeCCC
Q 020848 107 MEVCCTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA---GINVCSGGIIGLGEA 180 (320)
Q Consensus 107 ~~i~~~~g~l--~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glget 180 (320)
+.+++..|.+ +.+.++.|+++|++.+++++||.+++|+.++. .++|++.++.|+.+++. |+.+++++|+|+|||
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET 308 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET 308 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC
Confidence 7788888865 89999999999999999999999999999995 68999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeee-eeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 181 EEDRVGLLHTLATLPTHPESVPIN-ALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v~~~-~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
++|+.+++..|++++ ++.+.|. .+.|.+ ..+.-....+++++..+...+..
T Consensus 309 ~eEvie~m~dLrelG--VDivtIGQYL~Ps~-~h~~V~~yv~P~~F~~~~~~a~~ 360 (398)
T PTZ00413 309 EEEVRQTLRDLRTAG--VSAVTLGQYLQPTK-TRLKVSRYAHPKEFEMWEEEAMK 360 (398)
T ss_pred HHHHHHHHHHHHHcC--CcEEeeccccCCCc-ccCCceeccCHHHHHHHHHHHHH
Confidence 999999999999998 8899994 455543 22223345677776666555543
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=183.41 Aligned_cols=195 Identities=19% Similarity=0.254 Sum_probs=154.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
.+++|+.+|.||.++... + ... .+++++++.++.+.+.|+++++|+|++.+... ......+.++++.+++. +
T Consensus 69 i~~gC~~~C~FC~v~~~r--g--~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~~~p~ 142 (302)
T TIGR00510 69 LGDICTRRCPFCDVAHGR--N--PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIREKLPN 142 (302)
T ss_pred cCcCcCCCCCcCCccCCC--C--CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHhcCCC
Confidence 699999999999986421 1 112 47899999999999999999999987654332 12356788888888853 3
Q ss_pred ce--EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeCCCHH
Q 020848 107 ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEE 182 (320)
Q Consensus 107 ~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~e 182 (320)
+. +++....-+.+.++.|+++|.|.+++.+||.+++++.++++++++++++.++.+++. |+.+++++|+|+|||++
T Consensus 143 i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETee 222 (302)
T TIGR00510 143 IKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNE 222 (302)
T ss_pred CEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHH
Confidence 33 333211226889999999999999999999988999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeeeee-e-cCCCCCCCCCCCCHHHHHHHHHH
Q 020848 183 DRVGLLHTLATLPTHPESVPINALL-A-VKGTPLQDQKPVEIWEMIRMIAT 231 (320)
Q Consensus 183 d~~~~l~~l~~l~~~~~~v~~~~~~-p-~~gt~~~~~~~~~~~e~~~~~a~ 231 (320)
|+.++++++++++ ++.+.+..|. | .++.|+.....++..+.++.++.
T Consensus 223 e~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~ 271 (302)
T TIGR00510 223 EIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVAL 271 (302)
T ss_pred HHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 9999999999998 8888887665 4 34777776655555555555553
|
The family shows strong sequence conservation. |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=187.54 Aligned_cols=239 Identities=21% Similarity=0.279 Sum_probs=178.5
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||+.+.. ..++ +|+.||++|.||..........+....++.+++.+.++.+.+.|++.|.|+| |||+..+++
T Consensus 5 ~gr~~~~-l~i~-vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltG------GEPll~~~l 76 (334)
T TIGR02666 5 FGRRIDY-LRIS-VTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG------GEPLLRKDL 76 (334)
T ss_pred CCCccCe-EEEE-ecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------ccccccCCH
Confidence 4677664 3344 6999999999998753111112234559999999999999999999998876 467777888
Q ss_pred HHHHHHhhh-cCc-eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCe-e
Q 020848 96 LEYVKDIRD-MGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN-V 169 (320)
Q Consensus 96 ~~~i~~~k~-~~~-~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~-v 169 (320)
.++++.+++ .++ .+ .+|||.+..+.++.|+++|++.|++|+|+. ++.|+.+++ +.++++++++++.+++.|+. +
T Consensus 77 ~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v 156 (334)
T TIGR02666 77 VELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPV 156 (334)
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 899988886 467 44 467998888899999999999999999999 899999885 56999999999999999997 9
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC-CCCCCCCCHHHHHHHHHHHH-HhC---------CC
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-LQDQKPVEIWEMIRMIATAR-IVM---------PK 238 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~-~~~~~~~~~~e~~~~~a~~R-~~~---------p~ 238 (320)
.+++++..+.|.+++.++++++++++ + .+.+..|+|.++.. +......+.+++++.++..- .+. |.
T Consensus 157 ~in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~ 233 (334)
T TIGR02666 157 KLNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPA 233 (334)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCc
Confidence 99888756899999999999999998 4 47888999987653 22333466777776654321 111 11
Q ss_pred ceee--cCC--cccccChhHHHHHHHcCCceE
Q 020848 239 AMVR--LSA--GRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 239 ~~i~--~~~--g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.++. +.. +.+++..+. +..||.+||.+
T Consensus 234 ~~~~~~~~~~~~~ig~i~~~-s~~fC~~cnr~ 264 (334)
T TIGR02666 234 PAYRWRLPGGKGRIGFISPV-SDPFCGTCNRL 264 (334)
T ss_pred eeeeeecCCCCeEEEEEccC-CcccccccCEE
Confidence 2333 332 334444443 35588899997
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=181.04 Aligned_cols=197 Identities=18% Similarity=0.270 Sum_probs=154.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
.+++|+.+|.||+++... ..++ .+++|+.+.++.+.+.|++++.|+++..+... +...+.+.++++.+++. +
T Consensus 108 lg~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~-D~ga~~~~elir~Ir~~~P~ 181 (349)
T PLN02428 108 LGDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDLP-DGGSGHFAETVRRLKQLKPE 181 (349)
T ss_pred ecCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCC-cccHHHHHHHHHHHHHhCCC
Confidence 699999999999987421 1222 56888999998888999999999888543332 24567888888888854 3
Q ss_pred ceEEE-eCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhC-CCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeCCCH
Q 020848 107 MEVCC-TLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREA--GINVCSGGIIGLGEAE 181 (320)
Q Consensus 107 ~~i~~-~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~-~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ 181 (320)
+.+.. +++. .+++.++.|+++|++.+++++|+.+++++.++ ++.+|+++++.++.+++. |+.+++++|+|+||++
T Consensus 182 i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~ 261 (349)
T PLN02428 182 ILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETD 261 (349)
T ss_pred cEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCH
Confidence 44433 3343 48999999999999999999998888999998 578999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeeeee-ecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 182 EDRVGLLHTLATLPTHPESVPINALL-AVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 182 ed~~~~l~~l~~l~~~~~~v~~~~~~-p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
+|+.++++++++++ ++.+.|..|. |.+ ..+.-....+++++..+-..+..
T Consensus 262 Edv~e~l~~Lrelg--vd~vtigqyL~Ps~-~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 262 EEVVQTMEDLRAAG--VDVVTFGQYLRPTK-RHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred HHHHHHHHHHHHcC--CCEEeeccccCCCc-ceeeeecccCHHHHHHHHHHHHH
Confidence 99999999999998 8889886654 322 12222345777776666665554
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=188.19 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=173.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
.++++-++|..+|.||.+....... ...+.....+++.++++......++.|+|+||+ ++.-.+..++.|++.++..-
T Consensus 8 ~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGT-Ps~L~~~~l~~ll~~i~~~~ 86 (353)
T PRK05904 8 HLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGT-PNCLNDQLLDILLSTIKPYV 86 (353)
T ss_pred EEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc-cccCCHHHHHHHHHHHHHhc
Confidence 3456788999999999987532111 111221234556655554333457788888775 33322444455555554432
Q ss_pred hcC--ceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe-C
Q 020848 104 DMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 178 (320)
Q Consensus 104 ~~~--~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-g 178 (320)
..+ +.+.+++..++++.++.|+++|+++|++++|+. +++++.++++++.++..++++.++++|+. +.+++|+|+ |
T Consensus 87 ~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 87 DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 122 335677888999999999999999999999999 99999999999999999999999999997 999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCc---eeecC-----Ccccc
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKA---MVRLS-----AGRVR 249 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~a~~R~~~p~~---~i~~~-----~g~~~ 249 (320)
+|.+++.++++++.+++ +++++++.+.+.|||++.... .++.++..+++..++..+... .+.++ ++...
T Consensus 167 qt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~ 244 (353)
T PRK05904 167 LKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYIS 244 (353)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccc
Confidence 99999999999999998 899999999999999987643 356666667776666555432 11121 12221
Q ss_pred cC-----hhHHHHHHHcCCceEeeCCcc
Q 020848 250 FS-----MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 250 ~~-----~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.+ ....+.++++||.+.+.+.++
T Consensus 245 ~hn~~yw~~~~ylg~G~gA~s~~~~~r~ 272 (353)
T PRK05904 245 KHNLAYWRTKDWAAIGWGAHGFENNIEY 272 (353)
T ss_pred cchHhHhCCCCEEEEcCCcCcccCCeEE
Confidence 11 112345777888776655443
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=184.89 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=181.4
Q ss_pred cCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHH
Q 020848 15 SSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQ 94 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~ 94 (320)
.||+.+.. .-|+ .|++||++|.||...... ........++++++.+.++.+.+.|++.|.|+| |||+..++
T Consensus 11 ~~~r~~~~-l~i~-vT~~Cnl~C~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~ 81 (331)
T PRK00164 11 RFGRKFTY-LRIS-VTDRCNFRCTYCMPEGYL-PFLPKEELLSLEEIERLVRAFVALGVRKVRLTG------GEPLLRKD 81 (331)
T ss_pred CCCCccCe-EEEE-EcCCcCcCCCCCCCccCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcCccC
Confidence 35777764 2344 699999999999765321 112334559999999999988889999999876 46777788
Q ss_pred HHHHHHHhhhc-C-ceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-ee
Q 020848 95 ILEYVKDIRDM-G-MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NV 169 (320)
Q Consensus 95 l~~~i~~~k~~-~-~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v 169 (320)
+.++++.+++. + ..+ .+|||.+..+.++.|+++|++.+++|+|+. ++.|+.+++..++++++++++.+.+.|+ .+
T Consensus 82 l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v 161 (331)
T PRK00164 82 LEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPV 161 (331)
T ss_pred HHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcE
Confidence 89999988865 3 343 467888777889999999999999999999 8999999888899999999999999998 78
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CCCCCCCCCHHHHHHHHHHHHH--------hCCCce
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARI--------VMPKAM 240 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~~~~~~~~~~e~~~~~a~~R~--------~~p~~~ 240 (320)
.+++++..|.+++++.++++++++++ + .+.+..|+|.+.. .+......+.+++++.++.... -.|..+
T Consensus 162 ~i~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (331)
T PRK00164 162 KVNAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRARSGGPAQY 238 (331)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccCCCCCCCEE
Confidence 88887745889999999999999997 4 5788899998754 3433345667777776553210 123334
Q ss_pred eecC--CcccccChhHHHHHHHcCCceE-eeCC
Q 020848 241 VRLS--AGRVRFSMPEQALCFLAGANSI-FTGE 270 (320)
Q Consensus 241 i~~~--~g~~~~~~~~~~~~~~~Gan~~-~~~~ 270 (320)
+.+. .|.+++.... ...||.+||++ ++.+
T Consensus 239 ~~~~~~~~~ig~i~~~-s~~fC~~c~r~r~t~d 270 (331)
T PRK00164 239 FRHPDYGGEIGLIAPV-THDFCASCNRLRLTAD 270 (331)
T ss_pred EEECCCCeEEEEEeCC-CCcccccCCeEEEcCC
Confidence 4442 3444555444 34588999998 4433
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=190.77 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=156.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCH----HHHHHHHHH----HHHcCCCEEEEecccCCCCCCchhHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTK----DAVMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQIL 96 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~----eei~~~~~~----~~~~g~~~i~l~~g~~~~~ge~~~~~~l~ 96 (320)
.++++-++|+.+|.||.+....... . .+. +.++++++. ....+++.|+|+||++... ..+++.
T Consensus 8 ~lYiHiPFC~~~C~yC~f~~~~~~~----~-~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l----~~~~l~ 78 (378)
T PRK05660 8 SLYIHIPWCVQKCPYCDFNSHALKG----E-VPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLF----SAEAIQ 78 (378)
T ss_pred EEEEEeCCccCcCCCCCCeecCCCC----c-CCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccC----CHHHHH
Confidence 4567889999999999986532111 1 222 233333332 1124678898987643221 245566
Q ss_pred HHHHHhhh-----cCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 97 EYVKDIRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 97 ~~i~~~k~-----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
++++.+++ .+.+ +.++++.++.+.++.|+++|+++|++++|++ +++++.+++.+++++.+++++.+++.|+.
T Consensus 79 ~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 79 RLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred HHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 66666653 2344 4567788999999999999999999999999 99999999999999999999999999997
Q ss_pred -eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCC
Q 020848 169 -VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 169 -v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~--~~~~~~e~~~~~a~~R~~~p~ 238 (320)
+++++|+|+ ++|.+++.+.++.+.+++ +++++++.+.|.|||++... ..++.++...++..+...+..
T Consensus 159 ~v~~dli~Glpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 159 SFNLDLMHGLPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 799999999 999999999999999998 89999999999999998753 235666777777777666543
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=187.64 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=154.4
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcC---CCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 26 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 26 l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~-~~~g---~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
|+++-++|+.+|.||.+....... .... --.+.+.+++... ...+ ++.|+|+||++... .+..+..+++.++.
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l-~~~~l~~ll~~i~~ 79 (360)
T TIGR00539 3 LYIHIPFCENKCGYCDFNSYENKS-GPKE-EYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTL-SVEAFERLFESIYQ 79 (360)
T ss_pred EEEEeCCCcCcCCCCCCcccCcCc-cCHH-HHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcC-CHHHHHHHHHHHHH
Confidence 567889999999999987532111 0100 0133444444432 2234 77888887643222 12334445554443
Q ss_pred hh--hcCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEE
Q 020848 102 IR--DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 175 (320)
Q Consensus 102 ~k--~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~ 175 (320)
.. ..+.+ +.++++.++++.++.|+++|+++|++++||. +++++.+++.+++++++++++.++++|+. +.+++|+
T Consensus 80 ~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 80 HASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 22 22344 4567788999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred Ee-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCC
Q 020848 176 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 176 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~--~~~~~~e~~~~~a~~R~~~p 237 (320)
|+ ++|.+++.++++++.+++ +++++++.|.|.|||++... ..++.++..+++..+...+.
T Consensus 160 GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~ 222 (360)
T TIGR00539 160 GLPLQTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILE 222 (360)
T ss_pred CCCCCCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHH
Confidence 99 999999999999999998 89999999999999998653 24567777777776655554
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-23 Score=189.86 Aligned_cols=209 Identities=20% Similarity=0.263 Sum_probs=160.2
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
.|+++-++|+.+|.||.+.... +........++.++++++.... .+++.|+|+||+ ++...+..++.+.+.++...
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGt-ps~l~~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYS--GKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGT-PTYLSLEALEILKETIKKLN 81 (374)
T ss_pred EEEEEeCCccCCCCCCCCCccc--CCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCc-ccCCCHHHHHHHHHHHHhCC
Confidence 3566889999999999986532 1111111135667777654322 347788887764 44333445555666655432
Q ss_pred -hcCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe-
Q 020848 104 -DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 177 (320)
Q Consensus 104 -~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl- 177 (320)
..+++ +.+++..++++.++.|+++|+++|++++|+. +++++.+++.+++++++++++.+++.|++ +.+++|+|+
T Consensus 82 ~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlP 161 (374)
T PRK05799 82 KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLP 161 (374)
T ss_pred CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Confidence 22345 4566778999999999999999999999999 89999999999999999999999999997 999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+|.+++.++++++.+++ +++++++.+.|.|||++.. ...++.++..+++..++..+..
T Consensus 162 gqt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 226 (374)
T PRK05799 162 NQTLEDWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKE 226 (374)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8999999999999999853 2456777778888777666543
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=186.25 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=159.5
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcC-CC----CHHHHHHHHHHHHH--cCCCEEEEecccCCCCCCchhHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQK-LM----TKDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILE 97 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~-~~----s~eei~~~~~~~~~--~g~~~i~l~~g~~~~~ge~~~~~~l~~ 97 (320)
.|+++-++|..+|.||.|............ .- -.+.+.++++.... .+++.|+|+||++... .+..+..|++
T Consensus 12 ~lYiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l-~~~~l~~ll~ 90 (400)
T PRK07379 12 SAYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLL-SVEQLERILT 90 (400)
T ss_pred EEEEEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccC-CHHHHHHHHH
Confidence 467788999999999999643211100000 00 13455555554322 2477888988754332 2334455555
Q ss_pred HHHHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 98 YVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 98 ~i~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
.++..... +.+ +.++++.++.+.++.|+++|++++++++||+ +++++.++++++.+++.++++.++++|++ +++
T Consensus 91 ~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~ 170 (400)
T PRK07379 91 TLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSL 170 (400)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 55432211 234 4567888999999999999999999999999 99999999999999999999999999998 999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
++|+|+ |||.+++.++++++.+++ +++++++.|.|.|||++.. ...++.++..+++..++..+..
T Consensus 171 dlI~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 171 DLISGLPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred EeecCCCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999998 8999999999999999854 2456778888888887776654
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=184.90 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=147.7
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 26 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 26 l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
++++-++|+.+|.||.+..... . .......++.++++++...+ .+++.|+|+||+ ++.-.+..+++|++.++.
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~-~-~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGT-Ps~l~~~~l~~ll~~i~~ 79 (350)
T PRK08446 3 LYIHIPFCESKCGYCAFNSYEN-K-HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGT-PSTVSAKFYEPIFEIISP 79 (350)
T ss_pred EEEEeCCccCcCCCCCCcCcCC-C-cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCc-cccCCHHHHHHHHHHHHH
Confidence 5678899999999999875321 1 11111245666666664332 267888888775 333334456667766665
Q ss_pred hhhcCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe
Q 020848 102 IRDMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 177 (320)
Q Consensus 102 ~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 177 (320)
....+.+ +.+++..++++.++.|+++|++++++++||+ +++++.+++.++.+++.++++.+++.|+. +++++|+|+
T Consensus 80 ~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~Gl 159 (350)
T PRK08446 80 YLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDT 159 (350)
T ss_pred hcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 5222344 5567788999999999999999999999999 99999999999999999999999999996 899999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC
Q 020848 178 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 178 -get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~ 216 (320)
++|.+++.+.++++.+++ +++++++.+.|.|||++..
T Consensus 160 Pgqt~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~ 197 (350)
T PRK08446 160 PLDNKKLLKEELKLAKELP--INHLSAYSLTIEENTPFFE 197 (350)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCEEEeccceecCCChhHH
Confidence 999999999999999998 8999999999999999865
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=187.51 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=154.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCchhHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~~~~~l~~~ 98 (320)
.|+++-++|+.+|.||+|................+.++++++...+ .++..++|+||++ +.. ..+++.++
T Consensus 165 sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTP-t~L---~~~~L~~L 240 (488)
T PRK08207 165 SIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTP-TSL---TAEELERL 240 (488)
T ss_pred EEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCc-cCC---CHHHHHHH
Confidence 4566788999999999987542111111000123555555554321 2466788887743 322 23445555
Q ss_pred HHHhhh-c----Cc-eEEE---eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-
Q 020848 99 VKDIRD-M----GM-EVCC---TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI- 167 (320)
Q Consensus 99 i~~~k~-~----~~-~i~~---~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi- 167 (320)
++.+++ . ++ ++++ ++..++++.++.|+++|++++++++||. +++++.+++.++++++.++++.++++|+
T Consensus 241 l~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 241 LEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred HHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCC
Confidence 555442 1 33 4444 3457999999999999999999999999 9999999999999999999999999999
Q ss_pred eeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhC
Q 020848 168 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 168 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~----~~~~~~~e~~~~~a~~R~~~ 236 (320)
.+++++|+|+ |||.+++.++++++.+++ +++++++.+.+.|||++.. ...++.++..+++..++..+
T Consensus 321 ~In~DLI~GLPgEt~ed~~~tl~~l~~L~--pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 321 NINMDLIIGLPGEGLEEVKHTLEEIEKLN--PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhcC--cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 5999999999 999999999999999998 8999999999999999863 23567777778877765554
|
|
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=184.69 Aligned_cols=199 Identities=16% Similarity=0.242 Sum_probs=158.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k 103 (320)
.+. .+.||+++|.||..+... + +++..++|+|+++++.+.+.|+++|.|++.....++... ....+.++++.++
T Consensus 141 ~i~-isrGCp~~CsfC~~~~~~--g--~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 141 FIK-VQDGCNFFCSYCIIPFAR--G--RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred EEE-eccCcCCCCCCCceeeec--C--CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHh
Confidence 455 699999999999875321 2 355689999999999999999999999875443333211 1134566666665
Q ss_pred hc-Cc---eE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeeeE
Q 020848 104 DM-GM---EV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSGG 173 (320)
Q Consensus 104 ~~-~~---~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~--~Gi~v~~~~ 173 (320)
+. ++ .+ .+++..++++.++.|+++| +..+.+++||. +++++.++++++.+++.++++.+++ .|+.+.+++
T Consensus 216 ~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~ 295 (414)
T TIGR01579 216 QIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDI 295 (414)
T ss_pred cCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeE
Confidence 43 33 22 2334458999999999987 78999999999 9999999999999999999999999 899999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIA 230 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~a 230 (320)
|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.....+...
T Consensus 296 IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 352 (414)
T TIGR01579 296 IVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVK 352 (414)
T ss_pred EEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 9999 999999999999999998 889999999999999998765 456655444443
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=159.05 Aligned_cols=235 Identities=17% Similarity=0.285 Sum_probs=183.6
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..++++++.|.++|.+|+... ...+- .-+.+++++...++.+.|...+.|+||....+ ...++.+.+.++++|
T Consensus 12 ~sISVTG~yC~lnC~HCg~~~--L~~Mi---~vt~~~l~k~~~el~kkGy~g~llSGGm~srg--~VPl~kf~d~lK~lk 84 (275)
T COG1856 12 ISISVTGAYCSLNCPHCGRHY--LEHMI---KVTTKSLLKRCMELEKKGYEGCLLSGGMDSRG--KVPLWKFKDELKALK 84 (275)
T ss_pred ceEEEeccceEecChHHHHHH--HHHhc---ccchHHHHHHHHHHHhcCceeEEEeCCcCCCC--CccHHHHHHHHHHHH
Confidence 456779999999999997532 21221 14558888888899999999999988865443 356788999999999
Q ss_pred -hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCC
Q 020848 104 -DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL-GEA 180 (320)
Q Consensus 104 -~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get 180 (320)
+.++.+..+.|..+++.++.|+++++|.+++.+=+-+++.+.+.+ ..+.+++++.++.+++.|+++..++++|+ .-.
T Consensus 85 e~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gk 164 (275)
T COG1856 85 ERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGK 164 (275)
T ss_pred HhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCc
Confidence 458888899999999999999999999998865443344433333 67899999999999999999999999999 433
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcc--cccChhHHHHH
Q 020848 181 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR--VRFSMPEQALC 258 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~--~~~~~~~~~~~ 258 (320)
.+.-.+.++.+.+.. ++.+.+..|+|.|||.|++.++++.+|..+.+..||..+|+ .+.+.+.+ ..-.-..+..+
T Consensus 165 i~~e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~a 241 (275)
T COG1856 165 IHGEFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEA 241 (275)
T ss_pred ccchHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHH
Confidence 344456777778776 88999999999999999999999999999999999999999 33443222 11122456778
Q ss_pred HHcCCceEee
Q 020848 259 FLAGANSIFT 268 (320)
Q Consensus 259 ~~~Gan~~~~ 268 (320)
..+|.|.+..
T Consensus 242 v~~gVd~It~ 251 (275)
T COG1856 242 VLAGVDRITF 251 (275)
T ss_pred HHcCCceeec
Confidence 8999999843
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=182.71 Aligned_cols=210 Identities=18% Similarity=0.211 Sum_probs=156.7
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCC--CcCCCCHHHHHHHHHHHHH-c-----CCCEEEEecccCCCCCCchhHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVK--GQKLMTKDAVMQAAQKAKE-A-----GSTRFCMGAAWRDTIGRKTNFNQIL 96 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~--~~~~~s~eei~~~~~~~~~-~-----g~~~i~l~~g~~~~~ge~~~~~~l~ 96 (320)
.|+++-++|+.+|.||.+......... .....-.+.+.++++...+ . .++.++|+||++.... +..+..|+
T Consensus 4 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~-~~~l~~ll 82 (375)
T PRK05628 4 GVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG-AEGLARVL 82 (375)
T ss_pred EEEEEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC-HHHHHHHH
Confidence 356678899999999998643211100 0000125667777765443 2 3677888876433222 33444455
Q ss_pred HHHHHhhhc--CceE--EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-ee
Q 020848 97 EYVKDIRDM--GMEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VC 170 (320)
Q Consensus 97 ~~i~~~k~~--~~~i--~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 170 (320)
+.++..... +.++ .+++..++++.++.|+++|+++|++++||. +++++.+++.++.++++++++.+++.|++ +.
T Consensus 83 ~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~ 162 (375)
T PRK05628 83 DAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVN 162 (375)
T ss_pred HHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 544443221 3443 457788999999999999999999999999 99999999999999999999999999998 99
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p 237 (320)
+++|+|+ +||.+++.++++++.+++ +++++++.+.+.|||++.. .+.++.++...++..++..+.
T Consensus 163 ~dli~GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 163 LDLIYGTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999998 8999999999999999854 234566666777777665543
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=185.67 Aligned_cols=209 Identities=18% Similarity=0.202 Sum_probs=161.3
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCchhHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~~~~~l~~~ 98 (320)
.++++-++|+.+|.||.|..... . ........+.++++++...+ ..++.|+|+||+ ++.-.+..+..|++.
T Consensus 63 ~lYiHIPFC~~~C~yC~f~~~~~-~-~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGT-Ps~L~~~~l~~ll~~ 139 (449)
T PRK09058 63 LLYIHIPFCRTHCTFCGFFQNAW-N-PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGT-PTALSAEDLARLITA 139 (449)
T ss_pred EEEEEeCCcCCcCCCCCCcCcCC-c-hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCc-cccCCHHHHHHHHHH
Confidence 45678899999999999864311 1 11111246777777765443 236778888775 433224445555555
Q ss_pred HHHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eeeee
Q 020848 99 VKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSG 172 (320)
Q Consensus 99 i~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~~~ 172 (320)
++..... +.+ +..++..++++.++.|+++|++++++++||+ +++++.+++.++.++++++++.+++.|+ .+.++
T Consensus 140 i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~D 219 (449)
T PRK09058 140 LREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCD 219 (449)
T ss_pred HHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 5543322 334 4566778999999999999999999999999 9999999999999999999999999994 69999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCC-CHHHHHHHHHHHHHhCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPV-EIWEMIRMIATARIVMPK 238 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~-~~~e~~~~~a~~R~~~p~ 238 (320)
+|+|+ |+|.+++.+.++++.+++ +++++++.|.+.|||++.. .+.+ +.++..++++.++..+..
T Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~ 291 (449)
T PRK09058 220 LIFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAK 291 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999998 8999999999999998753 2344 778888888888777654
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-22 Score=182.27 Aligned_cols=204 Identities=18% Similarity=0.140 Sum_probs=156.1
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 26 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 26 l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
++++-+.|+.+|.||.+....... ......++.++++++.+... +++.++++||+ ++.- ..+++.++++.+
T Consensus 4 lYihiPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGt-pt~l---~~~~l~~ll~~i 77 (377)
T PRK08599 4 AYIHIPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGT-PTAL---SAEQLERLLTAI 77 (377)
T ss_pred EEEEeCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCC-cccC---CHHHHHHHHHHH
Confidence 445678899999999987532111 11113467788887655544 46677777653 3321 235556666555
Q ss_pred hhc-C----ce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeE
Q 020848 103 RDM-G----ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGG 173 (320)
Q Consensus 103 k~~-~----~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~ 173 (320)
++. + .+ +.++++.++++.++.|+++|++++++++||. +++++.++++++++++.++++.+++.|+. +.+++
T Consensus 78 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dl 157 (377)
T PRK08599 78 HRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDL 157 (377)
T ss_pred HHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEee
Confidence 532 1 23 4567788999999999999999999999999 99999999999999999999999999997 88999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC------CCCCHHHHHHHHHHHHHhCC
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~------~~~~~~e~~~~~a~~R~~~p 237 (320)
|+|+ +||.+++.++++++.+++ +++++++++.|.|||++... +.++.+...++++.+...+.
T Consensus 158 i~GlPgqt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 226 (377)
T PRK08599 158 IYALPGQTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEME 226 (377)
T ss_pred ecCCCCCCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999998 88999999999999998532 23556666667666655543
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=181.16 Aligned_cols=209 Identities=13% Similarity=0.104 Sum_probs=160.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.++++-++|..+|.||.|....... ... ..-.+.+.++++...+ ..++.|+|+||++ +.-.+..+..|++.++
T Consensus 6 ~lYiHIPFC~~kC~yC~f~~~~~~~-~~~-~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTP-s~l~~~~L~~ll~~i~ 82 (380)
T PRK09057 6 GLYVHWPFCLAKCPYCDFNSHVRHA-IDQ-ARFAAAFLRELATEAARTGPRTLTSIFFGGGTP-SLMQPETVAALLDAIA 82 (380)
T ss_pred EEEEEeCCcCCcCCCCCCcccCcCc-CCH-HHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCcc-ccCCHHHHHHHHHHHH
Confidence 4567889999999999997532111 100 0135666666664433 2477899988753 3332334455555554
Q ss_pred Hhhhc----CceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 101 DIRDM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 101 ~~k~~----~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
..... .+.+.++++.++.+.++.|+++|++++++++||+ +++++.++++++.++..++++.+++++..+++++|+
T Consensus 83 ~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~ 162 (380)
T PRK09057 83 RLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIY 162 (380)
T ss_pred HhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeec
Confidence 43211 2335678888999999999999999999999999 999999999999999999999999998789999999
Q ss_pred Ee-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 176 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 176 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+ |+|.+++.+.++.+.+++ +++++++++.+.|||++.. ...++.++..+++..++.++..
T Consensus 163 GlPgqt~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 230 (380)
T PRK09057 163 ARPGQTLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAA 230 (380)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 99 999999999999999997 8999999999999998853 2346777778888877776643
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=185.30 Aligned_cols=208 Identities=16% Similarity=0.178 Sum_probs=152.5
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHH-HHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQA-AQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~-~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.++++-++|..+|.||.|....... .... .-.+.++++ ++.... ..++.++++||+ ++.-.+..+..|++.+
T Consensus 8 ~lYiHIPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGT-Ps~l~~~~l~~ll~~i 84 (370)
T PRK06294 8 ALYIHIPFCTKKCHYCSFYTIPYKE-ESVS-LYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGT-PSLVPPALIQDILKTL 84 (370)
T ss_pred EEEEEeCCccCcCCCCcCcccCCCc-cCHH-HHHHHHHHHHHHHhhhhccCCceeEEEECCCc-cccCCHHHHHHHHHHH
Confidence 4567889999999999986531111 0000 002333333 222221 246778888775 3333233444444444
Q ss_pred HHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe
Q 020848 100 KDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 177 (320)
Q Consensus 100 ~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 177 (320)
+......+.+.+++..++++.++.|+++|++++++++||+ +++++.+.+.++.+++.++++.+++.|+. +++++|+|+
T Consensus 85 ~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~Gl 164 (370)
T PRK06294 85 EAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGL 164 (370)
T ss_pred HhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 3211112345677888999999999999999999999999 99999999999999999999999999996 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC------CCCCHHHHHHHHHHHHHhCC
Q 020848 178 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 178 -get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~------~~~~~~e~~~~~a~~R~~~p 237 (320)
|+|.+++.+.++.+.+++ +++++++.+.|.|||++... ..++.++...++..+...+.
T Consensus 165 Pgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (370)
T PRK06294 165 PTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLT 229 (370)
T ss_pred CCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 89999999999999987532 23566666777776665554
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-22 Score=167.60 Aligned_cols=180 Identities=29% Similarity=0.449 Sum_probs=143.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-----CCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
.|++|+++|.||...... + . ...++++++.+.++.+.+.| ++.+.++||+..... + +.+.++++.++
T Consensus 7 ~t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~-~---~~~~~~~~~~~ 78 (216)
T smart00729 7 ITRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS-P---EQLEELLEAIR 78 (216)
T ss_pred ecCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC-H---HHHHHHHHHHH
Confidence 799999999999887532 1 1 34478999999999886654 356677765432211 1 13455555554
Q ss_pred hc-----Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcC-CeeeeeEE
Q 020848 104 DM-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGGI 174 (320)
Q Consensus 104 ~~-----~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~G-i~v~~~~i 174 (320)
+. +.. +.++.+.++++.++.|+++|++.+.+++++. ++.++.++++.++++++++++.+++.| +.+.+.++
T Consensus 79 ~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~ 158 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEE
Confidence 32 223 3444466899999999999999999999999 899998988999999999999999999 88999999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+|+ +++.+++.++++++.+++ ++.+.+..|.|.|||++...+
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 159 VGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 999 599999999999999998 788999999999999987654
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=181.91 Aligned_cols=188 Identities=16% Similarity=0.270 Sum_probs=154.8
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.|||++|+||..+... + +.+.+++|+|+++++.+.+.|++.|.|+|.....+|++. ..+.+.++++.+
T Consensus 157 ~~i~-I~rGC~~~CsfC~~p~~~--G--~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 157 VHVP-IIYGCNMSCSYCVIPLRR--G--RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred EEEE-cccCCCCCCCcCCeeccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 3455 579999999999876421 2 235579999999999999999999999876544455542 245677777777
Q ss_pred hhc-Cc---eEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~~---~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
++. ++ .+. .++..++++.++.|+++ |+..+.+++|+. +++++.+++++++++++++++.+++. |+.+.++
T Consensus 232 ~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d 311 (459)
T PRK14338 232 HEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTD 311 (459)
T ss_pred HhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 753 43 332 34556899999999985 589999999999 99999999999999999999999998 7889999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||++...+
T Consensus 312 ~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 312 IIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhCc
Confidence 99999 999999999999999998 788999999999999987653
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=182.24 Aligned_cols=193 Identities=15% Similarity=0.202 Sum_probs=155.4
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|+|.....++.+.....+.++++.+.
T Consensus 151 a~l~-isrGC~~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~ 225 (445)
T PRK14340 151 AFVP-VMRGCNNMCAFCVVPFTR--G--RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVS 225 (445)
T ss_pred EEEE-eccCCCCCCCCCCccccc--C--CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHh
Confidence 4455 689999999999876321 2 3455899999999999999999999998765444443322234566666665
Q ss_pred hc--CceE--E-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DM--GMEV--C-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~--~~~i--~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+. +..+ . .++..++++.++.|+++ |+..+.+++|+. +++++.++++.+.+++.++++.+++. |+.+.+++
T Consensus 226 ~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~ 305 (445)
T PRK14340 226 RAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDL 305 (445)
T ss_pred hcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccE
Confidence 32 2332 2 23445789999999986 799999999999 99999999999999999999999998 99999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-CC-CCCHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIW 223 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-~~-~~~~~ 223 (320)
|+|+ |||++++.++++++++++ ++.+.++.|.|.|||+++. .+ ..+.+
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~~ 356 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPEE 356 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCHH
Confidence 9999 999999999999999998 8899999999999999874 43 35543
|
|
| >PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=182.56 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=153.6
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .+.||+++|.||..+... + +++..++|+|+++++.+.+.|+++|.|.+.....+|....-..+.++++.+.
T Consensus 148 a~v~-i~rGC~~~CsFC~~p~~~--g--~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~ 222 (437)
T PRK14331 148 AYVT-VMRGCDKKCTYCVVPKTR--G--KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVA 222 (437)
T ss_pred EEEE-eccCcCCCCccCCcccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHh
Confidence 4555 589999999999876421 2 3455799999999999999999999998754443332211123555555554
Q ss_pred hc-C---ceEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DM-G---MEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~-~---~~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+. + +... .++..++++.++.|+++ |+..+.+++|+. +++++.|+++.+.+++.++++.+++. |+.+.+++
T Consensus 223 ~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~ 302 (437)
T PRK14331 223 EIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDI 302 (437)
T ss_pred cCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCE
Confidence 32 3 2322 23445899999999998 589999999999 99999999999999999999999998 99999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 224 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e 224 (320)
|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||++...+ ..+.++
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 9999 999999999999999998 788999999999999998765 344443
|
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=183.44 Aligned_cols=209 Identities=16% Similarity=0.193 Sum_probs=161.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----CCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~----g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.++++.+.|+.+|.||.+....... ........+.++++++...+. .+..+.|+||+ ++.-.+..+++|++.++
T Consensus 41 ~lYvHIPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGT-Ps~l~~~~l~~Ll~~i~ 118 (430)
T PRK08208 41 SLYIHIPFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGT-PTLLNAAELEKLFDSVE 118 (430)
T ss_pred EEEEEeCCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCc-cccCCHHHHHHHHHHHH
Confidence 4566789999999999886432111 011112356677776654432 35678887664 44333445566666666
Q ss_pred Hhhhc---Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeE
Q 020848 101 DIRDM---GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGG 173 (320)
Q Consensus 101 ~~k~~---~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~ 173 (320)
..... +.+ +.+++..++++.++.|+++|+++|++++||. ++.++.+.++++.+++.++++.+++.|+. +.+++
T Consensus 119 ~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dl 198 (430)
T PRK08208 119 RVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDL 198 (430)
T ss_pred HhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 54322 234 4567778999999999999999999999999 99999999999999999999999999998 78999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
|+|+ ++|.+++.++++++.+++ +++++++++.+.|||++.....++.++..+++..++..+.
T Consensus 199 I~GlP~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~ 261 (430)
T PRK08208 199 IYGIPGQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLL 261 (430)
T ss_pred ecCCCCCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999998 8999999999999999987665667777888877766654
|
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=182.46 Aligned_cols=209 Identities=14% Similarity=0.131 Sum_probs=158.7
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.++++-++|..+|.||.|......... .. .-.+.+.++++.... ..++.|+|+||++ +.-.+..++.+++.++
T Consensus 13 ~lYiHiPFC~~~C~yC~f~~~~~~~~~-~~-~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTP-s~l~~~~l~~ll~~i~ 89 (390)
T PRK06582 13 SIYIHWPFCLSKCPYCDFNSHVASTID-HN-QWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTP-SLMNPVIVEGIINKIS 89 (390)
T ss_pred EEEEEeCCCcCcCCCCCCeeccCCCCC-HH-HHHHHHHHHHHHHHHHccCCceeEEEECCCcc-ccCCHHHHHHHHHHHH
Confidence 456788999999999999753221100 00 113334444443322 2477888888753 3333445555666555
Q ss_pred Hhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 101 DIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 101 ~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
..... ..+ +.+++..++++.++.|+++|++++++++||+ +++++.+.+.++.++.+++++.+++.+..+++++|+
T Consensus 90 ~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~ 169 (390)
T PRK06582 90 NLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIY 169 (390)
T ss_pred HhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeec
Confidence 43222 223 5678888999999999999999999999999 999999999999999999999999986679999999
Q ss_pred Ee-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 176 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 176 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+ |+|.+++.+.++.+.+++ +++|+++.+.+.|||++.. ...++.++..+++..++..+..
T Consensus 170 GlPgqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 237 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLES 237 (390)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 99 999999999999999998 8999999999999999853 2456778888888877766543
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=180.26 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=157.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCC-CCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGV-KGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~-~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.++++-++|..+|.||.|........ ......-.+.+.++++.... ..++.|+|+||++.. -.+..+..|++.+
T Consensus 21 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~-L~~~~L~~ll~~i 99 (394)
T PRK08898 21 SLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSL-LSAAGLDRLLSDV 99 (394)
T ss_pred EEEEEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCC-CCHHHHHHHHHHH
Confidence 45678899999999999975422110 00000134666666664432 237788898875433 2233444555544
Q ss_pred HHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE
Q 020848 100 KDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI 174 (320)
Q Consensus 100 ~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i 174 (320)
+..... +.+ +.++++.++.+.++.|+++|++++++++||+ +++++.+++.++.++..++++.+++.+..+++++|
T Consensus 100 ~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI 179 (394)
T PRK08898 100 RALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLM 179 (394)
T ss_pred HHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEE
Confidence 443322 133 5677888999999999999999999999999 99999999999999999999999998767999999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC--CCCHHHHHHHHHHHHHhCC
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~--~~~~~e~~~~~a~~R~~~p 237 (320)
+|+ |+|.+++.+.++.+.+++ +++++++.|.+.|||++.... .++.++...++..+...+.
T Consensus 180 ~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~ 243 (394)
T PRK08898 180 YALPGQTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLA 243 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHH
Confidence 999 999999999999999998 899999999999999986542 3556666777776665553
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=173.42 Aligned_cols=236 Identities=20% Similarity=0.247 Sum_probs=174.3
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||.++... -++ .|++||++|.||...... ......++.|++.+.++.+...|++.|.|+| |||+..+++
T Consensus 5 ~gr~~~~l-~i~-vT~~CNl~C~yC~~~~~~---~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l 73 (302)
T TIGR02668 5 FGRPVTSL-RIS-VTDRCNLSCFYCHMEGED---RSGGNELSPEEIERIVRVASEFGVRKVKITG------GEPLLRKDL 73 (302)
T ss_pred CCCccCeE-EEE-EcccccCCCCCCCccccC---CCccCcCCHHHHHHHHHHHHHcCCCEEEEEC------cccccccCH
Confidence 56676542 445 699999999999775321 1123459999999999888889999998876 467778889
Q ss_pred HHHHHHhhhcCc-eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 96 LEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 96 ~~~i~~~k~~~~-~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
.++++.+++.++ .+ .+|||.+..+.++.|+++|++.|++|+|+. ++.|+.+++..++++++++++.+++.|+. +.+
T Consensus 74 ~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i 153 (302)
T TIGR02668 74 IEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKL 153 (302)
T ss_pred HHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 999999987777 44 577898778899999999999999999999 89999998888999999999999999997 888
Q ss_pred eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CCCCCCCCCHHHHHHHHHHHHHhCC------CceeecC
Q 020848 172 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARIVMP------KAMVRLS 244 (320)
Q Consensus 172 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~~~~~~~~~~e~~~~~a~~R~~~p------~~~i~~~ 244 (320)
++++-.|.|.+++.++++++.+++ + .+.+..++|.+.. ........+.+++...+...-...+ ...+.+.
T Consensus 154 ~~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR02668 154 NMVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVRTRRMHNRPKYFIP 230 (302)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHHHhcccccccCCCCCcEEEeC
Confidence 887745799999999999999997 4 4788889987632 2222233455665555443211011 1111222
Q ss_pred C-cccccChhHHHH-HHHcCCceE
Q 020848 245 A-GRVRFSMPEQAL-CFLAGANSI 266 (320)
Q Consensus 245 ~-g~~~~~~~~~~~-~~~~Gan~~ 266 (320)
. +..++.... .. .+|.+||.+
T Consensus 231 ~~~~~g~i~~~-~~~~fC~~c~r~ 253 (302)
T TIGR02668 231 GGVEVEVVKPM-DNPVFCAHCTRL 253 (302)
T ss_pred CCeEEEEECcc-CCCCccccCCeE
Confidence 2 344454443 23 478899988
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=180.83 Aligned_cols=195 Identities=16% Similarity=0.217 Sum_probs=154.7
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k 103 (320)
.+. ++.||+++|+||..+... + +++..++++|+++++.+.+.|++.|.|.+.....+|.+. ..+++.++++.+.
T Consensus 138 ~i~-~srGC~~~CsfC~~~~~~--G--~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~ 212 (430)
T TIGR01125 138 YLK-VAEGCNRRCAFCIIPSIR--G--KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELG 212 (430)
T ss_pred EEE-EccCCCCCCCcCCeeccc--C--CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHH
Confidence 455 699999999999876432 2 345589999999999999999999998764333344321 1245666666666
Q ss_pred hcC-ce---E-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DMG-ME---V-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~~-~~---i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+.+ +. + .+.+..++++.++.|+++| +..+.+++||. +++++.++++.+.+++.++++.+++. |+.+.+++
T Consensus 213 ~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~ 292 (430)
T TIGR01125 213 KVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTF 292 (430)
T ss_pred hcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEE
Confidence 443 32 2 2334568999999999995 78999999999 99999999999999999999999998 56688999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 226 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~ 226 (320)
|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.++..
T Consensus 293 I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 293 IVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 9999 999999999999999998 789999999999999997654 35555433
|
This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. |
| >PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=179.95 Aligned_cols=194 Identities=15% Similarity=0.248 Sum_probs=155.4
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh--HHHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYVK 100 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~--~~~l~~~i~ 100 (320)
...+. .+.||+++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.|.....+|.... ...+.++++
T Consensus 213 ~a~v~-I~~GC~~~CsFC~vp~~r--G--~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~ 287 (509)
T PRK14327 213 KAWVN-IMYGCDKFCTYCIVPYTR--G--KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMD 287 (509)
T ss_pred EEEEE-ecCCCCCCCcCCcccccC--C--CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHH
Confidence 45666 689999999999876321 2 3455899999999999999999999998765444443211 123556666
Q ss_pred HhhhcCce---EE-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeee
Q 020848 101 DIRDMGME---VC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 171 (320)
Q Consensus 101 ~~k~~~~~---i~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 171 (320)
.+.+.++. +. .++..++++.++.++++| +..+.+++|+. +++++.|+++++.+++++.++.+++. ++.+.+
T Consensus 288 ~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~t 367 (509)
T PRK14327 288 EIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTT 367 (509)
T ss_pred HHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEee
Confidence 66654442 32 234558999999999999 67999999999 99999999999999999999999997 677888
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIW 223 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~ 223 (320)
++|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||+++..+ ..+.+
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~~~vp~~ 419 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMKDNVPME 419 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCcCCCCHH
Confidence 999999 999999999999999998 789999999999999997654 34443
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=181.47 Aligned_cols=199 Identities=14% Similarity=0.246 Sum_probs=156.9
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh-HHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~~ 102 (320)
..+. .+.||+++|.||..+... + +++..++|+|+++++.+.+.|++.|.|++.....+|.+.. ...+.++++.+
T Consensus 141 ~~i~-~srGC~~~CsfC~~~~~~--g--~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLK-IQEGCDKFCTYCIVPYAR--G--RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEE-HHhCcCCCCCcCceeccc--C--CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 3444 689999999999876422 2 4555899999999999999999999998754333332211 12466666666
Q ss_pred hhc-Cce-EE---EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcC--Ceeeee
Q 020848 103 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG--INVCSG 172 (320)
Q Consensus 103 k~~-~~~-i~---~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~G--i~v~~~ 172 (320)
++. ++. +. .++..++++.++.|+++| +..+.+++||. +++++.++++++.+++.+.++.+++.| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 543 332 22 234457899999999995 89999999999 999999999999999999999999988 789999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.+...+..
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~ 352 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVKKERL 352 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHHHHHH
Confidence 99999 999999999999999998 889999999999999998765 35554433333
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=176.03 Aligned_cols=194 Identities=15% Similarity=0.282 Sum_probs=150.2
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhHHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKD 101 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~~~l~~~i~~ 101 (320)
..+. .++||+++|+||..+.. . + +++..++|+|+++++.+.+.|+++|.|+|.+...+|.+ ..+.++++.+..
T Consensus 135 ~~i~-isrGC~~~CsfC~ip~~-~-G--~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~ 209 (420)
T TIGR01578 135 EIIP-INQGCLGNCSYCITKHA-R-G--KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE 209 (420)
T ss_pred EEEE-EccCCCCCCCCCccccC-C-C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh
Confidence 4565 69999999999987532 1 2 35558999999999999999999999987544434322 234555555444
Q ss_pred hhh-cCceEE-EeCC---CCCHHHHHHHHHhc-cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 102 IRD-MGMEVC-CTLG---MLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 102 ~k~-~~~~i~-~~~g---~l~~e~l~~L~~aG-ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
++. ..+.+. .++. .++++.++.++..+ +..+.+++|+. +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 210 i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~ 289 (420)
T TIGR01578 210 IPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTD 289 (420)
T ss_pred CCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 432 123332 2222 24567777776555 58899999999 99999999999999999999999998 8889999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE 224 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e 224 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+..+.+.
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~~ 340 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTNI 340 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHHH
Confidence 99999 999999999999999998 789999999999999998766555543
|
This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model. |
| >PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=176.37 Aligned_cols=198 Identities=15% Similarity=0.217 Sum_probs=154.5
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch----hHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEY 98 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~----~~~~l~~~ 98 (320)
...+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|+++|.|++.....+|... ....+.++
T Consensus 128 ~a~i~-isrGC~~~CsFC~ip~~r--G--~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVN-ISIGCDKKCTYCIVPHTR--G--KEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEE-ecCCCCCCCCcCCccccc--C--CCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 35666 699999999999876432 2 223369999999999999999999999875443333211 11235666
Q ss_pred HHHhhhc-Cc---eE-EEeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCe
Q 020848 99 VKDIRDM-GM---EV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GIN 168 (320)
Q Consensus 99 i~~~k~~-~~---~i-~~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~ 168 (320)
++.+.+. ++ .+ ..++-.++++.++.|+++ |+..+.+++|+. +++++.|+++.+.++++++++.+++. |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 6665542 33 22 223345789999999998 589999999999 99999999999999999999999997 778
Q ss_pred eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 020848 169 VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 227 (320)
Q Consensus 169 v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~ 227 (320)
+.+++|+|+ |||++|+.++++++.+++ ++.+.++.|.|.||||+.+.+ .++.+...+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~ 341 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEVASE 341 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHHHHH
Confidence 999999999 999999999999999997 788899999999999987764 455544333
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=180.81 Aligned_cols=178 Identities=17% Similarity=0.291 Sum_probs=146.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~ 106 (320)
++.||+++|.||..+.... + ..++..++|.|+++++.+.+. |++.|.|.++. .. ...+.+.++++.+++.+
T Consensus 202 tsRGCp~~C~FC~~~~~~~-g-~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~-f~----~~~~~~~~l~~~l~~~~ 274 (472)
T TIGR03471 202 TGRGCPSKCTFCLWPQTVG-G-HRYRTRSAESVIEEVKYALENFPEVREFFFDDDT-FT----DDKPRAEEIARKLGPLG 274 (472)
T ss_pred ecCCCCCCCCCCCCCccCC-C-CceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC-CC----CCHHHHHHHHHHHhhcC
Confidence 6999999999998653221 1 245568999999999988774 78889887542 11 13355666666666666
Q ss_pred ceEEE-eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHH
Q 020848 107 MEVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEED 183 (320)
Q Consensus 107 ~~i~~-~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed 183 (320)
+.... +...++++.++.|+++|+.++.+++||. +++++.++++.+.++..++++.+++.|+.+..++|+|+ +||.++
T Consensus 275 i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~ 354 (472)
T TIGR03471 275 VTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRET 354 (472)
T ss_pred ceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHH
Confidence 55322 2234799999999999999999999999 99999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 184 RVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
+.++++++.+++ ++.+.++.+.|.|||++.
T Consensus 355 ~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~ 384 (472)
T TIGR03471 355 IRKTIDFAKELN--PHTIQVSLAAPYPGTELY 384 (472)
T ss_pred HHHHHHHHHhcC--CCceeeeecccCCCcHHH
Confidence 999999999998 788999999999999875
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=177.36 Aligned_cols=198 Identities=15% Similarity=0.198 Sum_probs=154.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc--hhHHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK--TNFNQILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~--~~~~~l~~~i~~ 101 (320)
.+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|++.|.|.+.....+ +.. .....+.++++.
T Consensus 150 ~i~-isrGCp~~CsFC~~p~~~--G--~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~ 224 (444)
T PRK14325 150 FVS-IMEGCDKYCTFCVVPYTR--G--EEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRL 224 (444)
T ss_pred EEE-hhhCCCCCCCccccCccc--C--CcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHH
Confidence 344 589999999999876421 2 22347999999999999999999999876543332 210 012245555655
Q ss_pred hhhc-C---ceEE-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeee
Q 020848 102 IRDM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 171 (320)
Q Consensus 102 ~k~~-~---~~i~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 171 (320)
+.+. + +... .++..++++.++.|+++| +..+.+++||. +++++.++++.+.+++.++++.+++. |+.+.+
T Consensus 225 l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~ 304 (444)
T PRK14325 225 VAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISS 304 (444)
T ss_pred HHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEe
Confidence 5543 3 3332 234558999999999985 89999999999 99999999999999999999999997 788999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.+...+..
T Consensus 305 ~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~ 362 (444)
T PRK14325 305 DFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERL 362 (444)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHH
Confidence 999999 999999999999999998 788999999999999998765 45555444443
|
|
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=177.26 Aligned_cols=196 Identities=16% Similarity=0.237 Sum_probs=152.1
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-CchhHHHHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKD 101 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g-e~~~~~~l~~~i~~ 101 (320)
...+. .+.||+++|.||..+... + +....++|+|+++++.+.+.|++.|.|++.....+| ++.....+.++++.
T Consensus 139 ~~~l~-isrGC~~~CsfC~~p~~~--g--~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~ 213 (440)
T PRK14334 139 SAHLT-IMRGCNHHCTYCIVPTTR--G--PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRL 213 (440)
T ss_pred EEEEE-eccCCCCCCcCCCcchhc--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHH
Confidence 34555 689999999999886421 2 223478999999999999999999998764322222 22222344455555
Q ss_pred hhhcCc---eEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeee
Q 020848 102 IRDMGM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSG 172 (320)
Q Consensus 102 ~k~~~~---~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~--v~~~ 172 (320)
+++.++ .+. .++..++++.++.|+++ |+.++.+++|+. +++++.++++++.++++++++.+++.|.. +.++
T Consensus 214 l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d 293 (440)
T PRK14334 214 VGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTD 293 (440)
T ss_pred HHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 554443 332 23455899999999995 589999999999 99999999999999999999999998754 7889
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC-CCCCHHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-KPVEIWEM 225 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~-~~~~~~e~ 225 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++... ...+.++.
T Consensus 294 ~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 294 IIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 99999 999999999999999998 88999999999999998654 34555443
|
|
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=178.01 Aligned_cols=188 Identities=16% Similarity=0.228 Sum_probs=150.5
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.+.....+|.. .....+.++++.+
T Consensus 159 a~v~-isrGCp~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l 233 (502)
T PRK14326 159 AWVS-ISVGCNNTCTFCIVPSLR--G--KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRAC 233 (502)
T ss_pred EEEE-EccCCCCCCccCceeccC--C--CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHH
Confidence 4555 699999999999876432 2 23457999999999999999999999987544444321 1223455555555
Q ss_pred hhc-Cc---eE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-GM---EV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~~---~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
... ++ .+ +.++..++++.++.|+++| +..+.+++|+. +++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 234 ~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 234 GEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred HhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 432 32 32 2334458999999999997 89999999999 99999999999999999999999996 7789999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+|+|+ |||++|+.++++++.+++ ++.+.++.|.|.|||+++..+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 99999 999999999999999997 788899999999999998764
|
|
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=176.14 Aligned_cols=192 Identities=14% Similarity=0.191 Sum_probs=153.4
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|.+.+...++.. ...+.++++.+.
T Consensus 156 a~l~-isrGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~--~~~l~~Ll~~l~ 228 (449)
T PRK14332 156 AFVT-IMRGCNNFCTFCVVPYTR--G--RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ--STDFAGLIQMLL 228 (449)
T ss_pred EEEE-ecCCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC--cccHHHHHHHHh
Confidence 4555 589999999999876321 2 34558999999999999999999999987655444421 234666666654
Q ss_pred hc-C---ceEE-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~-~---~~i~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+. + +.+. .++..++++.++.++++| +..+.+++|+. +++++.++++.+.+++.++++.+++. ++.+.+++
T Consensus 229 ~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~ 308 (449)
T PRK14332 229 DETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDI 308 (449)
T ss_pred cCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 32 3 2222 234457899999999998 88999999999 99999999999999999999999997 67788999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC-CCC-CCCHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQK-PVEIWE 224 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~-~~~-~~~~~e 224 (320)
|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||+.+ ..+ .++.++
T Consensus 309 IvGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 309 IVGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 9999 999999999999999998 889999999999999987 343 344444
|
|
| >PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=175.78 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=154.2
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-c--hhHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-K--TNFNQILEYVK 100 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-~--~~~~~l~~~i~ 100 (320)
..+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|+++|.|.|.....++. . .....+.++++
T Consensus 154 ~~i~-I~rGC~~~CsfC~~p~~r--G--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 154 SFIP-IMNGCNNFCSYCIVPYVR--G--REISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred EEEE-hhcCCCCCCCCCCcccCC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHH
Confidence 3445 578999999999876422 2 2334799999999999999999999998754433321 1 01123455555
Q ss_pred Hhh----h-cCce----EEEeCCCCCHHHHHHHHH--hccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--C
Q 020848 101 DIR----D-MGME----VCCTLGMLEKHQAIELKK--AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--G 166 (320)
Q Consensus 101 ~~k----~-~~~~----i~~~~g~l~~e~l~~L~~--aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--G 166 (320)
.+. . .++. ...++..++++.++.|++ .|+..+.+++|+. +++++.|+++.+.+++.++++.+++. |
T Consensus 229 ~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 229 HIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCC
Confidence 542 1 1332 234456689999999998 4899999999999 99999999999999999999999998 9
Q ss_pred CeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 020848 167 INVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 228 (320)
Q Consensus 167 i~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~ 228 (320)
+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++.+.+ .++.+...+.
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R 370 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEVKIAR 370 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHHHHHH
Confidence 99999999999 999999999999999998 889999999999999998765 3555543333
|
|
| >PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=174.84 Aligned_cols=194 Identities=14% Similarity=0.197 Sum_probs=153.8
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|++.....+|.+. ..+.+.++++.+
T Consensus 126 a~i~-i~rGC~~~CsFC~ip~~r--G--~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 200 (418)
T PRK14336 126 ANVT-IMQGCDNFCTYCVVPYRR--G--REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSAL 200 (418)
T ss_pred EEEE-eccCCCCCCccCCccccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHH
Confidence 3455 589999999999876321 2 345589999999999999999999999876544444321 123456666665
Q ss_pred hhc-C---ceE-EEeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-G---MEV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~---~~i-~~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
++. + +.+ ..++..++++.++.|+++ ++..+.+++|+. +++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 201 ~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d 280 (418)
T PRK14336 201 HDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTD 280 (418)
T ss_pred HhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 532 2 332 233455789999999985 489999999999 99999999999999999999999998 9999999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-CC-CCCHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIWE 224 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-~~-~~~~~e 224 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++.. .+ ..+.+.
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~~ 333 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVIE 333 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHHH
Confidence 99999 999999999999999998 7889999999999999874 43 354443
|
|
| >TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=176.20 Aligned_cols=194 Identities=17% Similarity=0.239 Sum_probs=153.7
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCch--hHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT--NFNQILEYVK 100 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~--~~~~l~~~i~ 100 (320)
..+. .+.||+++|+||..+... + +.+.+++|+|+++++.+.+.|++.|.|++.....+ |... ....+.++++
T Consensus 147 ~~v~-i~rGC~~~CsfC~~~~~~--G--~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~ 221 (438)
T TIGR01574 147 SFIN-IMIGCNKFCTYCIVPYTR--G--DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLR 221 (438)
T ss_pred EEee-hhcCCCCCCCCCCeeeec--C--CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHH
Confidence 4555 589999999999875321 2 23458999999999999999999999987543333 3211 1124555666
Q ss_pred Hhhh-cCce-E---EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 020848 101 DIRD-MGME-V---CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 170 (320)
Q Consensus 101 ~~k~-~~~~-i---~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~ 170 (320)
.+.+ .++. + ..++..++++.++.|+++| +..+.+++|+. +++++.++++++.++++++++.+++. |+.+.
T Consensus 222 ~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~ 301 (438)
T TIGR01574 222 ELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSIS 301 (438)
T ss_pred HHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 6653 2432 2 2345568999999999999 89999999999 99999999999999999999999987 77789
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCC-CCHHH
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP-VEIWE 224 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~-~~~~e 224 (320)
+++|+|+ |||++++.++++++.+++ ++.+.++.|.|.|||++.+.+. .+.+.
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 355 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMPDQIPEEI 355 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCCCCCCHHH
Confidence 9999999 999999999999999998 7899999999999999987653 44443
|
Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme. |
| >PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=175.29 Aligned_cols=186 Identities=15% Similarity=0.242 Sum_probs=147.0
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|.||..+... + +++..++++|+++++.+.+.|++.|.|.+.....+|... ....+.++++.+
T Consensus 142 ~~v~-i~rGC~~~CsFC~ip~~~--G--~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVT-IIYGCNRFCTYCIVPYTR--G--REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEE-cccCCCCCCCCCceECcC--C--CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 3455 579999999999876322 2 235589999999999999999999999765433333111 112344444444
Q ss_pred hhc-Cce-E--E-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-GME-V--C-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~~~-i--~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
.+. ++. + . ..+..++++.++.|+++| +.++.+++||. +++++.|+++.+.+++.++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 322 332 2 1 233457899999999988 78999999999 99999999999999999999999996 7789999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~ 216 (320)
+|+|+ |||++++.++++++.+++ ++.+.++.|.|.|||++.+
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 99999 999999999999999998 8899999999999999876
|
|
| >PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=175.81 Aligned_cols=196 Identities=14% Similarity=0.221 Sum_probs=153.0
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|++.+.|.|.....+|... ....+.++++.+
T Consensus 149 ~~i~-i~rGC~~~CsfC~~p~~~--g--~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 149 AFVT-IMYGCNNFCTYCIVPYVR--G--RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred EEEE-HHhCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHH
Confidence 4556 689999999999876422 2 234579999999999999999999999876544444211 012344555555
Q ss_pred hhc-C---ceE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-G---MEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~---~~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
.+. + +.+ ..++..++++.++.|+++| +.++.+++|+. +++++.|+++++.++++++++.+++. ++.+.++
T Consensus 224 ~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 224 NEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred HhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 2 232 2345568999999999996 89999999999 99999999999999999999999987 6778899
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 226 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~ 226 (320)
+|+|+ |||++|+.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 357 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPEDVKH 357 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHHHHH
Confidence 99999 999999999999999997 788999999999999998653 34454333
|
|
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=175.64 Aligned_cols=194 Identities=11% Similarity=0.118 Sum_probs=151.1
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--h----hHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--T----NFNQILE 97 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~----~~~~l~~ 97 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|.+.....++-. . ....+.+
T Consensus 170 a~i~-isrGCp~~CsFC~ip~~~--G--~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 170 AFVS-IMRGCDNMCTFCVVPFTR--G--RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred EEEE-eccCcccCCCCCcccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 3455 689999999999875321 2 34558999999999999999999999876432222210 0 1224556
Q ss_pred HHHHhhhc----CceEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CC
Q 020848 98 YVKDIRDM----GMEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GI 167 (320)
Q Consensus 98 ~i~~~k~~----~~~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi 167 (320)
+++.+.+. .+... .++..++++.++.|+++ |+..+.+++||. +++++.++++.+.++..++++.+++. ++
T Consensus 245 Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 245 LLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 66655432 23332 33455899999999987 899999999999 99999999999999999999999986 56
Q ss_pred eeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-CC-CCCHHH
Q 020848 168 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIWE 224 (320)
Q Consensus 168 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-~~-~~~~~e 224 (320)
.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++.. .+ ..+.+.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~~~~~~v~~~~ 382 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAARKLEDDVPEEV 382 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhhhCCCCCCHHH
Confidence 7889999999 999999999999999998 7899999999999999874 33 344443
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=166.30 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=157.9
Q ss_pred cCCCeeEEEEEeecccCCCCC--------CCCCCCCCCCCCCCCC--CcCCCCH-HHHHHHHHHHHHcCCCEEEEecccC
Q 020848 15 SSMEEVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVK--GQKLMTK-DAVMQAAQKAKEAGSTRFCMGAAWR 83 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~s~-eei~~~~~~~~~~g~~~i~l~~g~~ 83 (320)
.||.+|+- .+++ ..-.||+ .|.||+...... ... .....+. ++|.+..+.....+...++|+||+
T Consensus 12 ~~g~~v~k-~~~~-~g~~cpnrdg~~~~~gC~FC~~~~~~~-~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt- 87 (302)
T TIGR01212 12 RYGQKVFK-ITLH-GGFSCPNRDGTKGRGGCTFCNDASRPI-FADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYT- 87 (302)
T ss_pred HcCCceEE-eecC-CCCCCCCCCCCCCCCCcccCCCCCCcc-ccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCC-
Confidence 35888875 3555 5788999 599998764321 110 1122443 444444444433333337777764
Q ss_pred CCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHH---Hhcc-CeeccCcccc-HHHHhhhCCCCCHHH
Q 020848 84 DTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELK---KAGL-TAYNHNLDTS-REFYSKIITTRSYDE 154 (320)
Q Consensus 84 ~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~---~aGl-d~v~i~let~-~~~~~~i~~~~~~~~ 154 (320)
++.. ..+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+++||. +++++.+++++++++
T Consensus 88 ~t~l---~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~ 164 (302)
T TIGR01212 88 NTYA---PVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFAC 164 (302)
T ss_pred cCCC---CHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHH
Confidence 4433 345666666666543 23345667778887776665 5599 5799999999 999999999999999
Q ss_pred HHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC------CCCCHHHHHH
Q 020848 155 RLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIR 227 (320)
Q Consensus 155 ~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~------~~~~~~e~~~ 227 (320)
+.++++.++++|+.+.+++|+|+ ||+.+++.++++++.+++ ++.+.+++|.|.|||++++. .+++.++++.
T Consensus 165 ~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~ 242 (302)
T TIGR01212 165 YVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYIS 242 (302)
T ss_pred HHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999999999999 999999999999999998 89999999999999998643 5678888787
Q ss_pred HHHHHHHhCCC
Q 020848 228 MIATARIVMPK 238 (320)
Q Consensus 228 ~~a~~R~~~p~ 238 (320)
.+..+...+|.
T Consensus 243 ~~~~~l~~l~~ 253 (302)
T TIGR01212 243 LACDFLEHLPP 253 (302)
T ss_pred HHHHHHHhCCc
Confidence 77666555554
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-20 Score=172.97 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=153.3
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC------------CchhH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTNF 92 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g------------e~~~~ 92 (320)
.+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|.+-+...+| +|. .
T Consensus 142 ~v~-isrGCp~~CsFC~ip~~~--G--~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-~ 215 (440)
T PRK14862 142 YLK-ISEGCNHRCTFCIIPSMR--G--DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV-K 215 (440)
T ss_pred EEE-eccCCCCCCccCCccccc--C--CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccch-h
Confidence 444 799999999999876432 2 345589999999999999999999998754322222 111 4
Q ss_pred HHHHHHHHHhhhcCc--eEE-EeCCCCCHHHHHHHHHhccC--eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 020848 93 NQILEYVKDIRDMGM--EVC-CTLGMLEKHQAIELKKAGLT--AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 165 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~--~i~-~~~g~l~~e~l~~L~~aGld--~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~- 165 (320)
+++.++++.+.+.++ .+. +.+..++++.++.+++ |.- .+.+++|+. +++++.++++.++++.+++++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 578888888776665 322 2333367889999998 643 788899999 99999999989999999999999986
Q ss_pred -CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 166 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 166 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||+....+ .++.++..+..
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHH
Confidence 777889999998 999999999999999998 789999999999999986443 45665544443
|
|
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=175.89 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=154.9
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.|+++-++|+.+|.||.+....... ........+.++++++.+.. .+++.|+|+||++... ..+++.+++
T Consensus 51 ~lYiHiPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l----~~~~l~~ll 125 (455)
T TIGR00538 51 SLYVHIPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYL----SPEQISRLM 125 (455)
T ss_pred EEEEEeCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCC----CHHHHHHHH
Confidence 4567889999999999987532111 11111235677777765432 3677888887643221 345566666
Q ss_pred HHhhh-----cCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-ee
Q 020848 100 KDIRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VC 170 (320)
Q Consensus 100 ~~~k~-----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 170 (320)
+.+++ .+.+ +.+++..++++.++.|+++|+++|++++|+. +++++.+++.++++++.++++.++++|+. +.
T Consensus 126 ~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~ 205 (455)
T TIGR00538 126 KLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSIN 205 (455)
T ss_pred HHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 66553 1334 4566778999999999999999999999999 99999999999999999999999999997 89
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CC----CCCCCCCHHHHHHHHHHHHHhCC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PL----QDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~----~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
+++|+|+ ++|.+++.++++++.+++ +++++++.|.+.|++ +. .....++.++..+++..+...+.
T Consensus 206 ~dli~GlPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 206 IDLIYGLPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred EeEEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999998 899999999776643 22 22334677887888776655443
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=169.72 Aligned_cols=193 Identities=13% Similarity=0.269 Sum_probs=155.2
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh--HHHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYVK 100 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~--~~~l~~~i~ 100 (320)
.+.+. ...||+.+|+||..+.. ++ +.+..++++|+++++.+.+.|+++|.|.|-+...+|.+.. ...|.++++
T Consensus 145 ~A~v~-I~eGCn~~CtfCiiP~~--RG--~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 145 RAFVK-IQEGCNKFCTFCIIPYA--RG--KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred EEEEE-hhcCcCCCCCeeeeecc--CC--CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 45666 58999999999977642 23 2344799999999999999999999998876666665433 245666666
Q ss_pred Hhhhc-Cc---eE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 020848 101 DIRDM-GM---EV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 170 (320)
Q Consensus 101 ~~k~~-~~---~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~ 170 (320)
.+-+. |+ .+ +.++-.++++.++.+++.. +..+.+++|+. +++++.|+|+++-+++++.++.+++. ++.+.
T Consensus 220 ~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~ 299 (437)
T COG0621 220 ELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAIS 299 (437)
T ss_pred HHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEe
Confidence 66543 33 33 3445568999999998852 57888999999 99999999999999999999999875 56699
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCH
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEI 222 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~ 222 (320)
+++|+|+ |||++|+.++++++++.+ ++++..+.|.|.||||.+..+ ..+.
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~~~qvp~ 351 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALMPDQVPE 351 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccCCCCCCH
Confidence 9999999 999999999999999998 899999999999999987543 3443
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=177.15 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=145.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC-
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG- 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~- 106 (320)
+|+||+++|.||..+... .+++..++|.++++++.+.+ .|++.|.|.+.. .+ ...+.+.++++.+.+.+
T Consensus 199 tSRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~-f~----~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 199 FARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE-PT----INRKKFQEFCEEIIARNP 269 (497)
T ss_pred ccCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc-cc----cCHHHHHHHHHHHHhcCC
Confidence 799999999999876421 34666899999999998764 799999887642 22 13355667777766433
Q ss_pred --ceE--EEeCCC--CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-C
Q 020848 107 --MEV--CCTLGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G 178 (320)
Q Consensus 107 --~~i--~~~~g~--l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g 178 (320)
+.. .+.... .+++.++.|+++|+.++.+++||. ++.++.++++.+.++..++++.++++|+.+..++|+|+ +
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~ 349 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFEN 349 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 332 222222 378999999999999999999999 99999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
||.+++.++++++.+++ ++++.++.+.|.|||++.
T Consensus 350 et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~ 384 (497)
T TIGR02026 350 ETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLF 384 (497)
T ss_pred CCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHH
Confidence 99999999999999998 789999999999999874
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=172.66 Aligned_cols=210 Identities=18% Similarity=0.237 Sum_probs=163.1
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-----CCCEEEEecccCCCCCCchhHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-----g~~~i~l~~g~~~~~ge~~~~~~l~~~ 98 (320)
..++++-+.|...|.||.+........ ....--.+-++++++..... .++.|+++||+ |+.-.+..++.+++.
T Consensus 35 ~slYiHiPFC~~~C~YC~fn~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGT-PslL~~~~l~~ll~~ 112 (416)
T COG0635 35 LSLYIHIPFCVSKCPYCDFNSHVTKRG-QPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGT-PSLLSPEQLERLLKA 112 (416)
T ss_pred eEEEEEcccccccCCCCCCeeeccCCC-ChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCc-cccCCHHHHHHHHHH
Confidence 355678999999999999976432111 00001134445555443332 26678888775 444446677777777
Q ss_pred HHHhhh-c--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 99 VKDIRD-M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 99 i~~~k~-~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
|+.... . +.+ +.++++.++.+.++.|+++|+++|++++|++ +++++.+.|.++.++..++++.+++.|+. +++
T Consensus 113 l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~ 192 (416)
T COG0635 113 LRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINI 192 (416)
T ss_pred HHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 776652 2 244 5678999999999999999999999999999 99999999999999999999999999997 999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC-----CCCCHHHHHHHHHHHHHhCC
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-----KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~-----~~~~~~e~~~~~a~~R~~~p 237 (320)
++|+|+ ++|.+++.+.++.+.+++ |++++++.|.-.|+|++... ..++.++.+.+.......+.
T Consensus 193 DLIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 193 DLIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 999999 999999999999999998 89999999999999988543 24666777777776655543
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-20 Score=171.78 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=152.3
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch--hHHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVKD 101 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~--~~~~l~~~i~~ 101 (320)
..+. .+.||+++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.+.....+|.+. ....+.++++.
T Consensus 150 a~v~-i~rGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~ 224 (446)
T PRK14337 150 AFVN-IMQGCDNFCAYCIVPYTR--G--RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHK 224 (446)
T ss_pred EEEE-eccCCCCCCcCCCcccCC--C--CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHH
Confidence 4555 589999999999875321 2 345589999999999999999999999875433333111 01235555555
Q ss_pred hhhc-C---ceE-EEeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeee
Q 020848 102 IRDM-G---MEV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 171 (320)
Q Consensus 102 ~k~~-~---~~i-~~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 171 (320)
+.+. + +.+ ..++..++++.++.|++. |+..+.+++|+. +++++.|+++++.+++.++++.+++. |+.+.+
T Consensus 225 l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~ 304 (446)
T PRK14337 225 VAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTT 304 (446)
T ss_pred HHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 5432 3 332 234455789999999984 589999999999 99999999999999999999999997 678999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEM 225 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~ 225 (320)
++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||+.+..+ .++.+..
T Consensus 305 d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~vk 358 (446)
T PRK14337 305 DLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEVK 358 (446)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHHH
Confidence 999999 999999999999999998 789999999999999998765 3555443
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=174.57 Aligned_cols=206 Identities=14% Similarity=0.146 Sum_probs=151.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.|+++.+.|+.+|.||.+..... .......--.+.++++++.... .++..++|+||++... ..+++.+++
T Consensus 52 ~LYvHIPfC~~~C~yC~~~~~~~-~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l----~~~~l~~ll 126 (453)
T PRK13347 52 SLYLHVPFCRSLCWFCGCNTIIT-QRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL----NPDQFERLM 126 (453)
T ss_pred EEEEEeCCccccCCCCCCcCcCc-cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC----CHHHHHHHH
Confidence 45667889999999999864321 1001000114556666654332 2466788887643222 235555555
Q ss_pred HHhhh-----cCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-ee
Q 020848 100 KDIRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VC 170 (320)
Q Consensus 100 ~~~k~-----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 170 (320)
+.+++ .+.+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.+++.++++.+++.|+. +.
T Consensus 127 ~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~ 206 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESIN 206 (453)
T ss_pred HHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 55553 1334 4567778999999999999999999999999 99999999999999999999999999997 99
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC-----CCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-----LQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~-----~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
+++|+|+ ++|.+++.++++++.+++ +++++++.|...|+.. ......++.++.++++..+...+.
T Consensus 207 ~dli~GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 207 FDLIYGLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred EeEEEeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999998 8999999987555422 122345677777787776655543
|
|
| >PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=172.77 Aligned_cols=195 Identities=16% Similarity=0.248 Sum_probs=151.9
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC------c--hhHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------K--TNFNQI 95 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge------~--~~~~~l 95 (320)
..+. .+.||+++|.||.++... + +.+..++|+|+++++.+.+.|++.|.|.|.....+|. | .....+
T Consensus 150 a~i~-i~~GC~~~CsFC~ip~~r--G--~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l 224 (448)
T PRK14333 150 AWVN-VIYGCNERCTYCVVPSVR--G--KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTL 224 (448)
T ss_pred EEEE-hhcCCCCCCCCCceeccc--C--CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccH
Confidence 3455 589999999999876422 2 2334789999999999999999999987633222221 1 012356
Q ss_pred HHHHHHhhhc-Cce-EE---EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--
Q 020848 96 LEYVKDIRDM-GME-VC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA-- 165 (320)
Q Consensus 96 ~~~i~~~k~~-~~~-i~---~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~-- 165 (320)
.++++.+.+. ++. +. .++..++++.++.++++ |+..+.+++|+. +++++.++++++.+++.++++.+++.
T Consensus 225 ~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p 304 (448)
T PRK14333 225 TDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMP 304 (448)
T ss_pred HHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 6666666643 332 32 23445789999999986 589999999999 99999999999999999999999998
Q ss_pred CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHH
Q 020848 166 GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEM 225 (320)
Q Consensus 166 Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~ 225 (320)
|+.+.+++|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+ ..+.+..
T Consensus 305 ~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~ 364 (448)
T PRK14333 305 DASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEVK 364 (448)
T ss_pred CcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHHH
Confidence 777999999999 999999999999999998 889999999999999987653 3445443
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=166.17 Aligned_cols=174 Identities=17% Similarity=0.300 Sum_probs=144.6
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
...+. .|+.||++|.||....... .....++.+++.+.++.+.+.|+..|.|+| |||+.++++.++++.+
T Consensus 17 ~l~i~-iT~~CNl~C~~C~~~~~~~---~~~~~~~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~il~~~ 86 (378)
T PRK05301 17 WLLAE-LTYRCPLQCPYCSNPLDLA---RHGAELSTEEWIRVLREARALGALQLHFSG------GEPLLRKDLEELVAHA 86 (378)
T ss_pred EEEEE-ecCccCcCCCCCCCccccc---cccCCCCHHHHHHHHHHHHHcCCcEEEEEC------CccCCchhHHHHHHHH
Confidence 34555 6999999999997643211 123348999999999999889998998876 5788888999999999
Q ss_pred hhcCce-EEEeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeeeEEEEeC
Q 020848 103 RDMGME-VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLG 178 (320)
Q Consensus 103 k~~~~~-i~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~Gi~v~~~~i~Glg 178 (320)
++.++. ..+|||. ++++.++.|+++|++.|.+|+|+. ++.++.+++.. +|++++++++.+++.|+++.+.+++ ..
T Consensus 87 ~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~ 165 (378)
T PRK05301 87 RELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HR 165 (378)
T ss_pred HHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ec
Confidence 987776 3567886 789999999999999999999999 89999987754 8999999999999999998887766 57
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
.|.+++.++++++.++| ++.+.+..+.+.
T Consensus 166 ~N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 166 HNIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred CCHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 89999999999999998 777777665553
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=171.68 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=152.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.++++-+.|+.+|.||.+....... ........+.+.++++...+ .+++.+.|+||++ +.- ..+++.+++
T Consensus 51 ~LYvHIPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtP-s~l---~~~~l~~ll 125 (453)
T PRK09249 51 SLYVHIPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTP-TFL---SPEQLRRLM 125 (453)
T ss_pred EEEEEeCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCccc-ccC---CHHHHHHHH
Confidence 4556789999999999986532111 11110134566666664433 3477888887643 321 245566666
Q ss_pred HHhhhc-----Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 020848 100 KDIRDM-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 170 (320)
Q Consensus 100 ~~~k~~-----~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~ 170 (320)
+.+++. +.+ +.+++..++++.++.|+++|++++++++|+. +++++.+++.+++++++++++.+++.|+ .+.
T Consensus 126 ~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~ 205 (453)
T PRK09249 126 ALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSIN 205 (453)
T ss_pred HHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 666532 334 4566778999999999999999999999999 9999999999999999999999999999 599
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC-----CCCCCCCHHHHHHHHHHHHHhC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-----QDQKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~-----~~~~~~~~~e~~~~~a~~R~~~ 236 (320)
+++|+|+ ++|.+++.++++++.+++ +++++++.|.+.|+... .....++.++..+++..+...+
T Consensus 206 ~dli~GlPgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 275 (453)
T PRK09249 206 IDLIYGLPKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETL 275 (453)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999998 89999999986554311 1223467777777777665554
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-19 Score=161.46 Aligned_cols=173 Identities=17% Similarity=0.285 Sum_probs=142.5
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .|+.||++|.||....... .....|+.|++.+.++.+.+.|+..|.|+| |||+.++++.++++.++
T Consensus 9 l~ie-iT~~CNl~C~~C~~~~~~~---~~~~~l~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~ii~~~~ 78 (358)
T TIGR02109 9 LLAE-LTHRCPLQCPYCSNPLELA---RRKAELTTEEWTDVLTQAAELGVLQLHFSG------GEPLARPDLVELVAHAR 78 (358)
T ss_pred EEEe-eccccCcCCCCCCCChhcc---cccCCCCHHHHHHHHHHHHhcCCcEEEEeC------ccccccccHHHHHHHHH
Confidence 3455 7999999999997643211 123348999999999999889998998876 56888889999999999
Q ss_pred hcCce-EEEeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 104 DMGME-VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 104 ~~~~~-i~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.++. ..+|||. ++++.++.|+++|++.|.+|+|+. ++.++.+++. .+|++++++++.+++.|+.+.+.+++ ..+
T Consensus 79 ~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~ 157 (358)
T TIGR02109 79 RLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRH 157 (358)
T ss_pred HcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccC
Confidence 87876 3567886 789999999999999999999999 8999998764 47999999999999999988777766 578
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 180 AEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 180 t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|.+++.++++++.++| ++.+.+....+.
T Consensus 158 N~~~l~~~~~~~~~lg--~~~i~~~~~~~~ 185 (358)
T TIGR02109 158 NIDQIPEIIELAIELG--ADRVELATTQYY 185 (358)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEEeeecc
Confidence 9999999999999998 677777654443
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=158.83 Aligned_cols=195 Identities=15% Similarity=0.220 Sum_probs=146.9
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
+...+. .|..||++|.||....... . .....+++|++++.++ +.|+..|.|.| |||+.++++.++++.
T Consensus 28 l~l~le-~T~~CNL~C~~C~~~~~~~-~-~~~~~ls~ee~~~~i~---e~g~~~V~i~G------GEPLL~pdl~eiv~~ 95 (318)
T TIGR03470 28 LVLMLE-PLFRCNLACAGCGKIQYPA-E-ILKQRLSVEECLRAVD---ECGAPVVSIPG------GEPLLHPEIDEIVRG 95 (318)
T ss_pred CEEEEe-cccccCcCCcCCCCCcCCC-c-ccccCCCHHHHHHHHH---HcCCCEEEEeC------ccccccccHHHHHHH
Confidence 344556 7999999999997653221 1 1123489999887665 46888887765 678888999999999
Q ss_pred hhhcCce-EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhC-CCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 102 IRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 102 ~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~-~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+++.++. ...|||.+..+.+.+|+++|.+.+.+++|+.++.+...+ +..+|++++++|+.+++.|+.+.+.+++-.+.
T Consensus 96 ~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~ 175 (318)
T TIGR03470 96 LVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDT 175 (318)
T ss_pred HHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCC
Confidence 9877766 457899877788999999999999999999866666654 45689999999999999999988877663478
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHH
Q 020848 180 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 231 (320)
Q Consensus 180 t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~ 231 (320)
+.+++.++++++.++| ++.+.+.+..|.+..+-.+ ..++.++..+.+..
T Consensus 176 n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~ 224 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFRE 224 (318)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHH
Confidence 9999999999999998 6777777666654333222 23455555554443
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=146.51 Aligned_cols=178 Identities=30% Similarity=0.504 Sum_probs=139.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
+|++|+++|.||....... . ........+++.+.+......+...+.++|| +|...+.+.++++.+++. +
T Consensus 3 ~~~~C~~~C~fC~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gg------ep~~~~~~~~~i~~~~~~~~~ 74 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKG-R-GPESPPEIEEILDIVLEAKERGVEVVILTGG------EPLLYPELAELLRRLKKELPG 74 (204)
T ss_pred cCCccCCcCCCCCCCCCCC-C-CccccccHHHHHHHHHHHHhcCceEEEEeCC------cCCccHhHHHHHHHHHhhCCC
Confidence 6899999999998865322 1 1111111146666666666678878877664 454455888888888865 5
Q ss_pred ceEE-EeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhC-CCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCH
Q 020848 107 MEVC-CTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAE 181 (320)
Q Consensus 107 ~~i~-~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~-~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ 181 (320)
+.+. .+++. ++++.++.|+++|++.+.+++|+. +..++.+. +..++++++++++.+++.|+.+.+.+++|. +++.
T Consensus 75 ~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 75 FEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred ceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChh
Confidence 5542 34454 589999999999999999999999 88888887 677999999999999999999999999999 4556
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 182 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 182 ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
+++.+.++++.+.+. +..+.+..|.|.|||++.
T Consensus 155 ~~~~~~~~~l~~~~~-~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRS-PDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcC-cchhhhhhhcccCCCeee
Confidence 889999999988752 578999999999999987
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=162.33 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=172.2
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g--~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
.|+++-+.|+.+|.||.+..... ...... .-.+.+.++++.+.+.| +..++|+||+ ++.. + +++.++++.+
T Consensus 54 ~LYvHIPFC~~~C~yC~f~~~~~-~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l-~---~~L~~ll~~i 126 (433)
T PRK08629 54 MLYAHVPFCHTLCPYCSFHRFYF-KEDKAR-AYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL-E---DELAKTLELA 126 (433)
T ss_pred EEEEEeCCccCcCCCCCCcCcCC-CcchHH-HHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC-H---HHHHHHHHHH
Confidence 56778899999999999975321 111111 12577888877666544 6678888764 3332 2 4455555555
Q ss_pred hhc-C---ceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHH---HHHHHHHHHcCCeeeeeEE
Q 020848 103 RDM-G---MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDER---LETLKHVREAGINVCSGGI 174 (320)
Q Consensus 103 k~~-~---~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~---l~~i~~a~~~Gi~v~~~~i 174 (320)
++. + +.+.+++..++++.++.|+++ ++++++++||+ +++++.+++.++.... ++.++.+++....+++++|
T Consensus 127 ~~~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI 205 (433)
T PRK08629 127 KKLFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLI 205 (433)
T ss_pred HHhCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEE
Confidence 532 3 335678888999999999999 99999999999 9999999998876555 5555555444345899999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC---CCCCCHHHHHHHHHHHHHhCCCceeecCCc----
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD---QKPVEIWEMIRMIATARIVMPKAMVRLSAG---- 246 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~---~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g---- 246 (320)
+|+ |||.+++.+.++++.+++ +++++++++.+.|+|.... ...++.++...++..++.++. .+.+++..
T Consensus 206 ~GlPgqT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~~ 282 (433)
T PRK08629 206 FNFPGQTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFSK 282 (433)
T ss_pred ccCCCCCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccCC
Confidence 999 999999999999999998 8999999999999997432 234566666777777777776 44443211
Q ss_pred --cc---cc-ChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCC
Q 020848 247 --RV---RF-SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 247 --~~---~~-~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~ 296 (320)
.. .. ....++.++++||.+.+.|.++. ...+.++-.+.+.+ |--|+.
T Consensus 283 ~~~~~~~~y~~~~~~ylGlG~gA~s~~~~~~~~--N~~~l~~Y~~~i~~-g~~pv~ 335 (433)
T PRK08629 283 KNDEGFDEYVIDYDEYLGVGSGSFSFLDGTLYV--NTFSLRDYQERIAA-GQMGVI 335 (433)
T ss_pred CCchhhceeeccCCeEEEEcCCeeEecCCeEEE--cCCCHHHHHHHHHc-CCCCee
Confidence 00 00 01123456777777665443222 22334444444433 433433
|
|
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=157.42 Aligned_cols=205 Identities=16% Similarity=0.229 Sum_probs=155.5
Q ss_pred EeecccCCCCCCCCCCCCCCC-CCCCC--CCcCCCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhH-HHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSR-YDTGV--KGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF-NQILEY 98 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~-~~~~~--~~~~~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~-~~l~~~ 98 (320)
.+. +|++||++|.||..... .+... .....++++|+++.++.+... ++..+.|.|. |||+.. +.+++.
T Consensus 27 ~~~-vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~-----GEPLl~~e~~~~~ 100 (442)
T TIGR01290 27 HLA-VAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGP-----GDPLANIGKTFQT 100 (442)
T ss_pred EEe-cCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecC-----CCcccCccccHHH
Confidence 455 79999999999975321 01011 123459999999999887654 4667777652 567554 557888
Q ss_pred HHHhhhc--CceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC----------CC-----CHHHHHHHH
Q 020848 99 VKDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----------TR-----SYDERLETL 159 (320)
Q Consensus 99 i~~~k~~--~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~----------~~-----~~~~~l~~i 159 (320)
++.+++. ++.+ ..|||.+..+.+++|.++|+|.|.+++++. ++.++.+.+ +. .+++.++++
T Consensus 101 l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l 180 (442)
T TIGR01290 101 LELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGL 180 (442)
T ss_pred HHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHH
Confidence 8888854 6774 567998889999999999999999999999 899887631 12 267778999
Q ss_pred HHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC--CCCCC--CCCCCCHHHHHHHHHHHHHh
Q 020848 160 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQ--DQKPVEIWEMIRMIATARIV 235 (320)
Q Consensus 160 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~--gt~~~--~~~~~~~~e~~~~~a~~R~~ 235 (320)
+.+.+.|+.+.+..++-.|.|++++.++++++++++ +..+.+.+|+|.| |+++. ..++++.+++.++...++..
T Consensus 181 ~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~ 258 (442)
T TIGR01290 181 EKLTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMG 258 (442)
T ss_pred HHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhh
Confidence 999999999888877755888899999999999998 6678899999888 87764 34678888877776665544
Q ss_pred CC
Q 020848 236 MP 237 (320)
Q Consensus 236 ~p 237 (320)
+|
T Consensus 259 ~~ 260 (442)
T TIGR01290 259 TP 260 (442)
T ss_pred hh
Confidence 43
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-18 Score=146.27 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=144.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC---CCEEEEecccCCCCCCchhHHH-HHHHHHHhh
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIR 103 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g---~~~i~l~~g~~~~~ge~~~~~~-l~~~i~~~k 103 (320)
+.+.+||++|.||....... ......++++++++.+..+.... ...|.|+| |||+..++ +.++++.++
T Consensus 20 v~~~gCnl~C~~C~~~~~~~--~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G------GEPll~~~~~~~li~~~~ 91 (235)
T TIGR02493 20 VFMQGCPLRCQYCHNPDTWD--LKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG------GEPLLQPEFLSELFKACK 91 (235)
T ss_pred EEECCCCCcCCCCCChhhcc--CCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC------cccccCHHHHHHHHHHHH
Confidence 36889999999997643211 11224489999999888765532 24677765 56777666 458999998
Q ss_pred hcCce-EEEeCCCCC--HHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--
Q 020848 104 DMGME-VCCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-- 177 (320)
Q Consensus 104 ~~~~~-i~~~~g~l~--~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-- 177 (320)
+.++. ...|||.+. .+.+.++.+ .+|.+.+++++. ++.|..+++. ++++++++++.+++.|+++.+.+++..
T Consensus 92 ~~g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~ 169 (235)
T TIGR02493 92 ELGIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGY 169 (235)
T ss_pred HCCCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCc
Confidence 87876 356888643 567777766 478899999999 8999887654 899999999999999998776666644
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC---------CCCCCCCCCCCHHHHHHHHHHHH
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---------GTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~---------gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
.++.+++.++++++.+++. ...+.+.+|.|.+ ..++.+.++++.+++.+..++++
T Consensus 170 ~~n~~ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 170 TDSEEDIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred CCCHHHHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 4688999999999999973 4677778887753 23445667788888777776665
|
An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. |
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=156.78 Aligned_cols=217 Identities=17% Similarity=0.287 Sum_probs=165.6
Q ss_pred eeEEEEEeecccCCCCC-CCCCCCCCC------CCCCCC-------CCcCCCCHHHHHHHHHHHHHcC--CCEE--EEec
Q 020848 19 EVQQCTLLSIKTGGCSE-DCSYCPQSS------RYDTGV-------KGQKLMTKDAVMQAAQKAKEAG--STRF--CMGA 80 (320)
Q Consensus 19 ~v~~~~~l~~~t~~C~~-~C~fC~~~~------~~~~~~-------~~~~~~s~eei~~~~~~~~~~g--~~~i--~l~~ 80 (320)
+|.+.+.+. .-..||+ +|.||+-.. .+..+. .++..-+.+++...++.+...| ++.+ .|.|
T Consensus 65 gv~~v~vm~-~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G 143 (522)
T TIGR01211 65 GVAVVAVMT-SPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG 143 (522)
T ss_pred CeEEEEEec-CCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC
Confidence 344445555 4577995 799996521 111111 1344468899999999998876 4444 5566
Q ss_pred ccCCCCCCchhHHHHHHHHHHhh-h-------------------------cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 81 AWRDTIGRKTNFNQILEYVKDIR-D-------------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 81 g~~~~~ge~~~~~~l~~~i~~~k-~-------------------------~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
|+ .+.-.....+.+++.+.... . .++.+.+++..++++.++.|+++|+++|.+
T Consensus 144 GT-ft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVsl 222 (522)
T TIGR01211 144 GT-FPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVEL 222 (522)
T ss_pred CC-cccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 54 33322334455555444332 1 123355777889999999999999999999
Q ss_pred Ccccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhc---CCCCCCeeeeeeeeec
Q 020848 135 NLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAV 209 (320)
Q Consensus 135 ~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~---l~~~~~~v~~~~~~p~ 209 (320)
++||+ +++++.++++++.+++.++++.++++|+++++++|+|+ |++.++..++++.+.+ ++ ++.+.++++.+.
T Consensus 223 GVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V~ 300 (522)
T TIGR01211 223 GVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLVT 300 (522)
T ss_pred ECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEecceee
Confidence 99999 99999999999999999999999999999999999999 9999999999998874 76 899999999999
Q ss_pred CCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc
Q 020848 210 KGTPLQD------QKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 210 ~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
+||++.. ..+++.++.+.+++.+...+|..
T Consensus 301 ~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~~ 336 (522)
T TIGR01211 301 RGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPKW 336 (522)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 9999853 46788999999999888888853
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-18 Score=142.94 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=156.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--- 105 (320)
.+..|-.+|.||.... +. ...++++|-.+.++....+|.+.++|++-.++... +.....+.+.|+++|+.
T Consensus 76 mG~~CTR~C~FC~V~~----g~--P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~~P~ 148 (306)
T COG0320 76 LGDICTRRCRFCDVKT----GR--PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIRELNPQ 148 (306)
T ss_pred ccchhccCCCccccCC----CC--CCCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhhCCC
Confidence 5889999999998864 22 22278899999999999999999999887766543 23445677777777754
Q ss_pred -CceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC--CeeeeeEEEEeCCCHH
Q 020848 106 -GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEE 182 (320)
Q Consensus 106 -~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G--i~v~~~~i~Glget~e 182 (320)
.+++++..-.-.++.++.+.++|.|.+++++||.+++|..++++.+|++-++.++.+++.+ +.+.+++|+|+||+.+
T Consensus 149 t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~ 228 (306)
T COG0320 149 TTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDE 228 (306)
T ss_pred ceEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHH
Confidence 4556554333478999999999999999999999999999999999999999999999988 7799999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 183 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 183 d~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
++.+.++.+++.+ ++.+.+..|.--.-..+.-....+++|+..+-..+..
T Consensus 229 Ev~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~ 278 (306)
T COG0320 229 EVIEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEE 278 (306)
T ss_pred HHHHHHHHHHHcC--CCEEEeccccCCccccCCceeccCHHHHHHHHHHHHH
Confidence 9999999999998 7888887765322222222345778887666665543
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=142.81 Aligned_cols=198 Identities=17% Similarity=0.235 Sum_probs=150.8
Q ss_pred ccCCCCCCCCCCCCCCCCCC--CCCCcCCCCHHHHHHHHHHHHHcCCC--EEEEecccCCCCCCchhHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDT--GVKGQKLMTKDAVMQAAQKAKEAGST--RFCMGAAWRDTIGRKTNFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~--~~~~~~~~s~eei~~~~~~~~~~g~~--~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~ 104 (320)
.+.+||++|.||+......+ ....|. .++|.+++..+...+..-+ +.+|-| .|||..++.+.++++++++
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~-Vd~eyLl~w~~kVa~~KgkglEaHlDG-----qGEP~lYP~l~~lVqalk~ 186 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYV-VDPEYLLEWFEKVARFKGKGLEAHLDG-----QGEPLLYPHLVDLVQALKE 186 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceE-ecHHHHHHHHHHHHhhhCCCeEEEecC-----CCCCccchhHHHHHHHHhc
Confidence 68899999999987543211 111233 6889999998877664222 444533 3789999999999999996
Q ss_pred c-Cce--EEEeCC-CCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 105 M-GME--VCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 105 ~-~~~--i~~~~g-~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
. +++ .+.||| +|+++.+++|.+||+|++++|+++. |+.-+.+.+. .+.+.+++..+.+.+.|+++-+.-++-.
T Consensus 187 ~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lP 266 (414)
T COG2100 187 HKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLP 266 (414)
T ss_pred CCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecC
Confidence 5 555 234555 5999999999999999999999999 7777777763 4778999999999999999777766646
Q ss_pred CCCHHHHHHHHHHHhcCCCC--CCeeeeeeeeecC-CCCCCCCCCCCHHHHHHHHHHH
Q 020848 178 GEAEEDRVGLLHTLATLPTH--PESVPINALLAVK-GTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~--~~~v~~~~~~p~~-gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
|-|++|+..+++|++++|.+ -..+.++.|+|.. |-.-....+.+..++++++...
T Consensus 267 G~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrel 324 (414)
T COG2100 267 GVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLREL 324 (414)
T ss_pred CcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHH
Confidence 89999999999999999753 3467899999976 4322223567788888887654
|
|
| >PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=139.22 Aligned_cols=155 Identities=25% Similarity=0.448 Sum_probs=119.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~-~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-- 105 (320)
+|++|+++|.||...... .......++++++++.++.+ ...|...+.++| |+|..++++.+.+..+.+.
T Consensus 3 ~~~~C~~~C~fC~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~------gep~~~~~~~~~~~~~~~~~~ 74 (166)
T PF04055_consen 3 TTRGCNLNCSFCYYPRSR--RKNKPREMSPEEILEEIKELKQDKGVKEIFFGG------GEPTLHPDFIELLELLRKIKK 74 (166)
T ss_dssp EESEESS--TTTSTTTTC--CTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES------STGGGSCHHHHHHHHHHHCTC
T ss_pred ECcCcCccCCCCCCCccC--CCcccccCCHHHHHHHHHHHhHhcCCcEEEEee------cCCCcchhHHHHHHHHHHhhc
Confidence 689999999999887531 11233448999999999999 577866666665 4566666777777766643
Q ss_pred -CceE-EEeCCC-CCHHHHHHHHHhccCeeccCcccc-HH-HHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CC
Q 020848 106 -GMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-RE-FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 179 (320)
Q Consensus 106 -~~~i-~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~-~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge 179 (320)
++.+ ..++|. .+++.++.|+++|++.+.+++++. ++ ..+.++++.++++++++++.++++|+.....+++|+ ++
T Consensus 75 ~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~ 154 (166)
T PF04055_consen 75 RGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGE 154 (166)
T ss_dssp TTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTT
T ss_pred cccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC
Confidence 5664 345565 459999999999999999999999 88 788887788999999999999999998445555556 99
Q ss_pred CHHHHHHHHHHH
Q 020848 180 AEEDRVGLLHTL 191 (320)
Q Consensus 180 t~ed~~~~l~~l 191 (320)
+++|+.++++++
T Consensus 155 ~~~e~~~~~~~i 166 (166)
T PF04055_consen 155 NDEEIEETIRFI 166 (166)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHhCcC
Confidence 999999999875
|
Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A .... |
| >TIGR01210 conserved hypothetical protein TIGR01210 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=142.11 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=137.2
Q ss_pred cCCCeeEEEEEeecccCCCCC----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCC----EEE-Eeccc--
Q 020848 15 SSMEEVQQCTLLSIKTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GST----RFC-MGAAW-- 82 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~----~i~-l~~g~-- 82 (320)
+.|.......++. .|.||++ +|.||++.... ++..++|++.+.++.+.+. +.+ .+. +.+|.
T Consensus 8 ~~~~~~~~~~~i~-~srGC~~~~~g~C~FC~~~~~~------~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~ 80 (313)
T TIGR01210 8 LRGFPGKSLTIIL-RTRGCYWAREGGCYMCGYLADS------SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFL 80 (313)
T ss_pred cCCcccceEEEEE-eCCCCCCCCCCcCccCCCCCCC------CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcC
Confidence 3343333334454 7999999 59999765321 1226889999999876653 322 111 33321
Q ss_pred CCCCCCchhHHHHHHHHHHhhhcC----ceEEEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHh-hhCCCCCHHHH
Q 020848 83 RDTIGRKTNFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYS-KIITTRSYDER 155 (320)
Q Consensus 83 ~~~~ge~~~~~~l~~~i~~~k~~~----~~i~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~-~i~~~~~~~~~ 155 (320)
.+.. ...+.+.++++.+++.+ +.+.+++..++++.++.|+++|++ +|.+++||. +++++ .++++++.+++
T Consensus 81 D~~~---~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~ 157 (313)
T TIGR01210 81 DDRE---VPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDF 157 (313)
T ss_pred CcCc---CCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHH
Confidence 1111 12344555555555433 335567778999999999999998 899999999 99995 79999999999
Q ss_pred HHHHHHHHHcCCeeeeeEEEEe-C----CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 156 LETLKHVREAGINVCSGGIIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 156 l~~i~~a~~~Gi~v~~~~i~Gl-g----et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
.++++.++++|+.+..++|+|+ + |+.+++.++++++..++ ++++++++.|.|||+++
T Consensus 158 ~~ai~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~---~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 158 IRAAELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT---DTVSINPTNVQKGTLVE 219 (313)
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC---CcEEEECCEEeCCCHHH
Confidence 9999999999999999999998 4 45567777888888884 79999999999999874
|
This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes. |
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=139.63 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=143.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHH-HHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~-l~~~i~~~k~ 104 (320)
++.+||++|.||..+... .......++++|+++.+...... ....|.++| |||+...+ +.++++.+++
T Consensus 26 f~~gCnl~C~~C~~~~~~--~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~~~~l~~~~k~ 97 (246)
T PRK11145 26 FFQGCLMRCLYCHNRDTW--DTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKK 97 (246)
T ss_pred EECCCCCcCCCCCCHHHC--CCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC------ccHhcCHHHHHHHHHHHHH
Confidence 688999999999864321 11123348999999988765432 234677765 57876666 4599999998
Q ss_pred cCceE-EEeCCCCC--HHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--C
Q 020848 105 MGMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--G 178 (320)
Q Consensus 105 ~~~~i-~~~~g~l~--~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--g 178 (320)
.|+.+ ..|||.+. .+.++.+.+. +|.+.+++++. ++.++.+++ .+.+..+++++.+.+.|+++.+.+++.. .
T Consensus 98 ~g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~g~~v~i~~~li~g~n 175 (246)
T PRK11145 98 EGIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKRNQKTWIRYVVVPGWT 175 (246)
T ss_pred cCCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhCCCcEEEEEEEECCCC
Confidence 88874 56789863 5778887664 89999999999 888988865 3567889999999999988666665544 5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC---------CCCCCCCCCHHHHHHHHHHHHH
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt---------~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
++++++.++++++++++ .+..+.+.+|.|.++. ++.+.++++.+++.+....++.
T Consensus 176 d~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~ 239 (246)
T PRK11145 176 DDDDSAHRLGEFIKDMG-NIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQ 239 (246)
T ss_pred CCHHHHHHHHHHHHhcC-CcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHH
Confidence 67779999999999886 2567888888887643 3345567888887776666654
|
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=142.81 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=152.3
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCC--CCCcCCCCHHHHHHHHHHHHH---c---C--------------CCEEEEe
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTG--VKGQKLMTKDAVMQAAQKAKE---A---G--------------STRFCMG 79 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~--~~~~~~~s~eei~~~~~~~~~---~---g--------------~~~i~l~ 79 (320)
-|..+.....+|+++|.||........+ .......++|+|++.+..... . | .+.+.|+
T Consensus 57 ~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iS 136 (322)
T PRK13762 57 RCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAIS 136 (322)
T ss_pred heeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEe
Confidence 3555554445599999999654322111 122345789999999865421 1 2 2346665
Q ss_pred cccCCCCCCchhHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHH
Q 020848 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDE 154 (320)
Q Consensus 80 ~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~ 154 (320)
++ |||+.+++|.++++.+++.|+.+ ..|||.+ ++.++.| +.++|.+.+++++. ++.|+.++++ .+|+.
T Consensus 137 l~-----GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~ 209 (322)
T PRK13762 137 LS-----GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWER 209 (322)
T ss_pred CC-----ccccchhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHH
Confidence 42 78988999999999999888874 5789976 6788888 77899999999999 8999999763 58999
Q ss_pred HHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC--CCCCCCCHHHHHHHHHHH
Q 020848 155 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL--QDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 155 ~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~--~~~~~~~~~e~~~~~a~~ 232 (320)
++++++.+.+.|.++.+.+++-.|.|..+..++++++++++ ++.+.+.+|+|.+.... .....++.+++..+...+
T Consensus 210 vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l 287 (322)
T PRK13762 210 ILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKEL 287 (322)
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHHHHHHHHHHH
Confidence 99999999999888666655534666667678999999987 78999999999875432 233457888888877766
Q ss_pred HHhC
Q 020848 233 RIVM 236 (320)
Q Consensus 233 R~~~ 236 (320)
+...
T Consensus 288 ~~~~ 291 (322)
T PRK13762 288 AEYT 291 (322)
T ss_pred HHhc
Confidence 6554
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=128.82 Aligned_cols=220 Identities=19% Similarity=0.315 Sum_probs=158.4
Q ss_pred cCCCeeEEEEEeecccCCCCCC--------CCCCCCCCCCCCCCCCcCCCCH-HHHHHHHHHHHHc-C-CC-EEEEeccc
Q 020848 15 SSMEEVQQCTLLSIKTGGCSED--------CSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKEA-G-ST-RFCMGAAW 82 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~~--------C~fC~~~~~~~~~~~~~~~~s~-eei~~~~~~~~~~-g-~~-~i~l~~g~ 82 (320)
.||.+|+-. .+. -+=.||++ |.||+-..+.... ..+.++. +++.+.+..+.+. + .+ -++|+..
T Consensus 18 ~fg~Kv~Kv-~ld-~GF~CPNRDGti~rGGCtFC~~~g~~d~~--~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~- 92 (312)
T COG1242 18 KFGEKVFKV-TLD-GGFSCPNRDGTIGRGGCTFCSVAGSGDFA--GQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAY- 92 (312)
T ss_pred HhCCeeEEE-ecc-CCCCCCCCCCcccCCceeeecCCCCCccc--cCcccCHHHHHHHHHHHHHHhhcCCcEEEEEecc-
Confidence 368888753 333 46679985 9999766432211 1222454 4555555544432 2 22 2345654
Q ss_pred CCCCCCchhHHHHHHHHHHhh-hc---CceEEEeCCCCCHHHHHHHHHhcc---CeeccCcccc-HHHHhhhCCCCCHHH
Q 020848 83 RDTIGRKTNFNQILEYVKDIR-DM---GMEVCCTLGMLEKHQAIELKKAGL---TAYNHNLDTS-REFYSKIITTRSYDE 154 (320)
Q Consensus 83 ~~~~ge~~~~~~l~~~i~~~k-~~---~~~i~~~~g~l~~e~l~~L~~aGl---d~v~i~let~-~~~~~~i~~~~~~~~ 154 (320)
+.|+. ..+-|-+..+.+- .. |+.+-+.+..+.++.++.|.+.-= -++.+++||. +++.+.++|+|++..
T Consensus 93 TNTyA---pvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 93 TNTYA---PVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred ccccC---cHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHH
Confidence 34444 2344444444433 22 555667788899999999887732 2456799999 999999999999999
Q ss_pred HHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC------CCCCCCHHHHHH
Q 020848 155 RLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWEMIR 227 (320)
Q Consensus 155 ~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~------~~~~~~~~e~~~ 227 (320)
+.++++.+++.||++++++|+|+ ||+.++..++++.+..++ ++-|.++++...+||+|+ .....+.+|+..
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~ 247 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVE 247 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceeccHHHHHH
Confidence 99999999999999999999999 999999999999999998 889999999999999985 356789999999
Q ss_pred HHHHHHHhCC-Ccee-ecC
Q 020848 228 MIATARIVMP-KAMV-RLS 244 (320)
Q Consensus 228 ~~a~~R~~~p-~~~i-~~~ 244 (320)
.+..+-..+| +..| |++
T Consensus 248 ~~~d~le~lpp~vviHRit 266 (312)
T COG1242 248 LVCDQLEHLPPEVVIHRIT 266 (312)
T ss_pred HHHHHHHhCCcceEEEEec
Confidence 8876644554 4444 454
|
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-15 Score=124.95 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=118.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 108 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~ 108 (320)
.|++||++|.||..+... .......++++++.+.++... ..++.+.|+| |||+..+++.++++.+++.|+.
T Consensus 22 ~t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sG------GEPll~~~l~~li~~~~~~g~~ 92 (191)
T TIGR02495 22 FFQGCNLKCPYCHNPELI--DREGSGEIEVEFLLEFLRSRQ-GLIDGVVITG------GEPTLQAGLPDFLRKVRELGFE 92 (191)
T ss_pred EcCCCCCCCCCCCCcccc--CCCCCCcCCHHHHHHHHHHhc-CCCCeEEEEC------CcccCcHhHHHHHHHHHHCCCe
Confidence 699999999999875321 112234489999999987642 2367787775 5677777799999999987877
Q ss_pred E-EEeCCCCCHHHHHHHHHhc-cCeeccCccccHHHHhhhCC-CCCHH-HHHHHHHHHHHcCCeeeeeEEEEeC-CCHHH
Q 020848 109 V-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTSREFYSKIIT-TRSYD-ERLETLKHVREAGINVCSGGIIGLG-EAEED 183 (320)
Q Consensus 109 i-~~~~g~l~~e~l~~L~~aG-ld~v~i~let~~~~~~~i~~-~~~~~-~~l~~i~~a~~~Gi~v~~~~i~Glg-et~ed 183 (320)
+ ..|||. .++.++++.++| ++.+.+++++.++.+..+.+ ..+++ +++++++.+++.|+.+.+.+++-.+ -..++
T Consensus 93 v~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~e 171 (191)
T TIGR02495 93 VKLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEED 171 (191)
T ss_pred EEEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHH
Confidence 4 456786 578899999999 69999999988666666644 45665 8999999999999987777666442 23668
Q ss_pred HHHHHHHHhcCC
Q 020848 184 RVGLLHTLATLP 195 (320)
Q Consensus 184 ~~~~l~~l~~l~ 195 (320)
+.++++++.+++
T Consensus 172 i~~~~~~l~~~~ 183 (191)
T TIGR02495 172 LAEIATRIKENG 183 (191)
T ss_pred HHHHHHHhccCC
Confidence 999999998875
|
This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. |
| >TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-15 Score=133.70 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=142.2
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchh--HHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTN--FNQILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~--~~~l~~~i~~ 101 (320)
++. .|++||.+|.||...... +......++.+++.+.++.+.+. ++..|.|+|| +|+. .+++.++++.
T Consensus 91 ll~-vT~~C~~~Cr~C~r~~~~--~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGG------DPl~~~~~~L~~ll~~ 161 (321)
T TIGR03822 91 LLK-PVHVCPVYCRFCFRREMV--GPEGLGVLSPAELDAAFAYIADHPEIWEVILTGG------DPLVLSPRRLGDIMAR 161 (321)
T ss_pred EEE-ecCCCCCcCcCCCchhhc--CCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCC------CcccCCHHHHHHHHHH
Confidence 344 699999999999765321 11122336889999988888754 8999988875 3543 3678888888
Q ss_pred hhhcC-c---eEEE-----eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeee
Q 020848 102 IRDMG-M---EVCC-----TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 102 ~k~~~-~---~i~~-----~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
+++.+ + .+.+ ++..++++.++.|+++|. .+.+++++. ++.. .++.+++++.++++|+.+..
T Consensus 162 l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~ 232 (321)
T TIGR03822 162 LAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVS 232 (321)
T ss_pred HHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEE
Confidence 87653 2 2222 233479999999999995 477888886 4321 37889999999999999766
Q ss_pred eEEE--EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 172 GGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 172 ~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
..++ |.+++.+++.++++++.+++ +....++.+.|.+|+... ..+.++..+++..++..++.
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISG 296 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCC
Confidence 5544 66899999999999999998 777889999999997544 36778888888877777665
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc. |
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=132.58 Aligned_cols=198 Identities=18% Similarity=0.258 Sum_probs=144.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH--------HHcCCCEEEEecccCCCCCCchhH-HHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA--------KEAGSTRFCMGAAWRDTIGRKTNF-NQILEYV 99 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~--------~~~g~~~i~l~~g~~~~~ge~~~~-~~l~~~i 99 (320)
++.+||++|.||..... +. .+.++.+||++.+..+ ...+++.|+|.| .|||+.. +.+.+++
T Consensus 127 sq~GCnl~C~FC~tg~~---g~--~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v~~~i 196 (368)
T PRK14456 127 SQAGCALRCSFCATGQM---GF--RRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNVFEAV 196 (368)
T ss_pred ecCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHHHHHH
Confidence 68999999999976531 22 2348899999887433 134688888876 2578665 4699999
Q ss_pred HHhhhc----Cc---eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC----CCCHHHHHHHHHH-HHH
Q 020848 100 KDIRDM----GM---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT----TRSYDERLETLKH-VRE 164 (320)
Q Consensus 100 ~~~k~~----~~---~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~----~~~~~~~l~~i~~-a~~ 164 (320)
+.+++. ++ .+ ..|+|+ . +.+++|.++|++ .+.+|+++. ++.++++.+ ..++++++++++. +.+
T Consensus 197 ~~l~~~~~~~~is~r~ItisT~Gl-~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~ 274 (368)
T PRK14456 197 LTLSTRKYRFSISQRKITISTVGI-T-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASK 274 (368)
T ss_pred HHHhccccccCcCcCeeEEECCCC-h-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHh
Confidence 998853 22 23 345673 3 458999999997 899999999 999999863 4489999999985 666
Q ss_pred cCCeeee--eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 165 AGINVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 165 ~Gi~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
.|.++.+ -++-|.+++.+|+.+++++++.+. ..|.+.+|.|+++.++. +++.+.+.+....++..--...++
T Consensus 275 ~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~---~~VnlIpyn~~~~~~~~---~ps~e~i~~F~~~L~~~Gi~vtvR 348 (368)
T PRK14456 275 TGEPVTLVYMLLEGINDSPEDARKLIRFASRFF---CKINLIDYNSIVNIKFE---PVCSSTRERFRDRLLDAGLQVTVR 348 (368)
T ss_pred cCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCC---CeeEEeeeccCCCCCCC---CCCHHHHHHHHHHHHHCCCcEEee
Confidence 7766555 445566789999999999999884 47889999998888764 466777666666565443334444
Q ss_pred cC
Q 020848 243 LS 244 (320)
Q Consensus 243 ~~ 244 (320)
-+
T Consensus 349 ~~ 350 (368)
T PRK14456 349 KS 350 (368)
T ss_pred CC
Confidence 33
|
|
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-15 Score=140.58 Aligned_cols=188 Identities=14% Similarity=0.213 Sum_probs=133.7
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEE-ecc-cCCCCCC----------
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCM-GAA-WRDTIGR---------- 88 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l-~~g-~~~~~ge---------- 88 (320)
+...|. .+.||+..|+||..+... + ......+.|+|+++++.+.+. |++.+.. .|| +...+|-
T Consensus 292 i~~sI~-i~RGC~g~CSFCaIp~~r--G-r~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~ 367 (620)
T PRK00955 292 VKFSIT-SHRGCFGGCSFCAITFHQ--G-RFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGA 367 (620)
T ss_pred EEEEEE-eeCCCCCCCCCCCeeccc--C-CcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccc
Confidence 344555 689999999999887542 2 223458999999999998886 7777632 222 1111110
Q ss_pred ---------------chhHHHHHHHHHHhhhc-Cce-EEEeCCC--------CCHHHHHHHHHhccC-eeccCcccc-HH
Q 020848 89 ---------------KTNFNQILEYVKDIRDM-GME-VCCTLGM--------LEKHQAIELKKAGLT-AYNHNLDTS-RE 141 (320)
Q Consensus 89 ---------------~~~~~~l~~~i~~~k~~-~~~-i~~~~g~--------l~~e~l~~L~~aGld-~v~i~let~-~~ 141 (320)
......+.+++++++++ ++. +.++.|. .+++.+++|.+.++. .+.+++|+. ++
T Consensus 368 c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~ 447 (620)
T PRK00955 368 CKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccccccCccccccCcChHHHHHHHHHHhccCCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChH
Confidence 01235688888888764 543 4444441 234578888887554 688999999 99
Q ss_pred HHhhhCCCC--CHHHHHHHH-HHHHHcCCe--eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 142 FYSKIITTR--SYDERLETL-KHVREAGIN--VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 142 ~~~~i~~~~--~~~~~l~~i-~~a~~~Gi~--v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
+++.|+++. .+++.++.+ +.+.+.|++ +..++|+|+ |||.+|+.++++++++++ ++.+.++.|.|.|||+..
T Consensus 448 VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~At 525 (620)
T PRK00955 448 VLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLST 525 (620)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcchh
Confidence 999998763 234444333 345567876 889999999 999999999999999998 788999999999998653
|
|
| >PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-14 Score=128.79 Aligned_cols=198 Identities=17% Similarity=0.285 Sum_probs=142.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH----Hc--C---CCEEEEecccCCCCCCch-hHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK----EA--G---STRFCMGAAWRDTIGRKT-NFNQILEY 98 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~----~~--g---~~~i~l~~g~~~~~ge~~-~~~~l~~~ 98 (320)
.+.+|+++|.||..... +. .+.++.+||++.+.... .. | ++.|.+.|+ |||+ .++.+.++
T Consensus 108 sq~GC~~~C~FC~tg~~---g~--~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGm-----GEPLln~~~v~~~ 177 (354)
T PRK14460 108 CQVGCAMGCTFCSTGTM---GF--ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGM-----GEPLLNLDEVMRS 177 (354)
T ss_pred CCCCcCCCCccCCCCCC---CC--CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecC-----CcccCCHHHHHHH
Confidence 68899999999975421 21 23489999999984332 12 2 567777664 4664 45779999
Q ss_pred HHHhhh-cCc-----eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHH-HHcC
Q 020848 99 VKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAG 166 (320)
Q Consensus 99 i~~~k~-~~~-----~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a-~~~G 166 (320)
++.+++ .|+ .+ ..|+|. .+.+++|.++|+..+.+|+++. ++.++++.+. .+.++++++++.. .+.|
T Consensus 178 l~~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~ 255 (354)
T PRK14460 178 LRTLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTR 255 (354)
T ss_pred HHHHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 999884 354 23 456786 6789999999999999999999 9999999774 3788888888764 3445
Q ss_pred Ceee--eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 167 INVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 167 i~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
-++. .-++-|.+++++|+.+++++++.++ ..|.+.+|.|.+|.++ ++++.+++.+....++..--...++-+
T Consensus 256 ~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~~Gi~vtir~~ 329 (354)
T PRK14460 256 ERVTFEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWSKGITAIIRKS 329 (354)
T ss_pred CeEEEEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 4544 4555567899999999999999986 3689999999888876 357777777766665543223334433
|
|
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=125.56 Aligned_cols=193 Identities=18% Similarity=0.268 Sum_probs=137.5
Q ss_pred cccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhhc
Q 020848 28 IKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM 105 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~~ 105 (320)
+.+.|||++|.||..+..... .......+++|++...+. ...++..|+++| ||| .+++.+.++++.+|+.
T Consensus 40 vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SG------GEP~~q~e~~~~~~~~ake~ 111 (260)
T COG1180 40 VFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSG------GEPTLQAEFALDLLRAAKER 111 (260)
T ss_pred EEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEEC------CcchhhHHHHHHHHHHHHHC
Confidence 468899999999987653221 111222234444333322 223677888876 456 5779999999999988
Q ss_pred Cce-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCH
Q 020848 106 GME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAE 181 (320)
Q Consensus 106 ~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ 181 (320)
|+. +..|||.++++.+++|.+. +|.+.+++... ++.|+.+... +.+.++++++.+.+.|+.+.+..++ |.+++.
T Consensus 112 Gl~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~-~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~ 189 (260)
T COG1180 112 GLHVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA-DNEPVLENLELLADLGVHVEIRTLVIPGYNDDE 189 (260)
T ss_pred CCcEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCC-CcHHHHHHHHHHHcCCCeEEEEEEEECCCCCCH
Confidence 998 4678999999999999998 99999999999 8889998744 4499999999999999986655555 445789
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 020848 182 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 182 ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
+++.++++++.+++. ...+.+.+|.|.. .+...++...+++-+....++
T Consensus 190 e~i~~i~~~i~~~~~-~~p~~~l~fhp~~--~~~~~p~~~~~~le~~~~~a~ 238 (260)
T COG1180 190 EEIRELAEFIADLGP-EIPIHLLRFHPDY--KLKDLPPTPVETLEEAKKLAK 238 (260)
T ss_pred HHHHHHHHHHHhcCC-cccEEEeccccCc--cccccCCCcHHHHHHhHhhhH
Confidence 999999999998763 4567777887632 333333333444444444444
|
|
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=132.83 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=123.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhH--HHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF--NQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~--~~l~~~i 99 (320)
.+..+|..||++|.||........ .......|+.+.+.+.++.+... +...|.|+| |||+.. +.+.+++
T Consensus 7 ~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G------GEPll~~~~~~~~~~ 80 (370)
T PRK13758 7 LIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG------GEPTLAGLEFFEELM 80 (370)
T ss_pred EEecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC------CccccCChHHHHHHH
Confidence 444356899999999976532111 11122348888888887766554 334566665 466554 3345666
Q ss_pred HHhhhcC---ce---EEEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC----CCCHHHHHHHHHHHHHcCCe
Q 020848 100 KDIRDMG---ME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 100 ~~~k~~~---~~---i~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~ 168 (320)
+.+++.+ +. ..+|||. ++++.++.|++.|+ .|.+|+|+.++.++..++ ..+|+.++++++.+++.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~ 159 (370)
T PRK13758 81 ELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVE 159 (370)
T ss_pred HHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCC
Confidence 6666443 32 3578886 78899999999886 899999999777777663 45899999999999999988
Q ss_pred eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee-eeec
Q 020848 169 VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA-LLAV 209 (320)
Q Consensus 169 v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~-~~p~ 209 (320)
+.+.+++. ..+.+++.++++++.+++ +..+.+.+ +.|.
T Consensus 160 ~~i~~~v~-~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~ 198 (370)
T PRK13758 160 FNILCVVT-SNTARHVNKIYKYFKEKD--FKFLQFINCLDPL 198 (370)
T ss_pred ceEEEEec-cccccCHHHHHHHHHHcC--CCeEeeeeccCcc
Confidence 77777764 457788999999999998 66665543 3443
|
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-15 Score=142.02 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=140.7
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHH-H
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVK-D 101 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~-~ 101 (320)
..+. ++.||+.+|.||..+... .++.+++++++++++...+.|...+.+..+....++.+ ...+...+.+. .
T Consensus 200 ~~ve-~~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 273 (490)
T COG1032 200 FSVE-TSRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLE 273 (490)
T ss_pred EEEE-eccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHH
Confidence 4555 799999999999887532 23447888999888887777766644222222222222 12223333222 2
Q ss_pred hhhcC------ceEE---EeCCCCC-HHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHH-HHHHHHHcCCee
Q 020848 102 IRDMG------MEVC---CTLGMLE-KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLE-TLKHVREAGINV 169 (320)
Q Consensus 102 ~k~~~------~~i~---~~~g~l~-~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~-~i~~a~~~Gi~v 169 (320)
+.+.+ +.+. .....++ ++.++.++++|..++.+++|+. +++++.+.++.+.++.++ +++.+.+.|+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~ 353 (490)
T COG1032 274 LIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRV 353 (490)
T ss_pred HHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCcee
Confidence 22221 1222 2334566 8889999999999999999999 999999999999999995 999999999999
Q ss_pred eeeEEEEe-CCCHHHHHHH---HHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHH
Q 020848 170 CSGGIIGL-GEAEEDRVGL---LHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 223 (320)
Q Consensus 170 ~~~~i~Gl-get~ed~~~~---l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~ 223 (320)
.+++|+|+ ||+.+|+.++ ++++.+++.. ..+.++.|+|.|+|++.........
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~-~~~~~~~~~p~p~t~~~~~~~~~~~ 410 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPK-LYVSPSPFVPLPGTPLQEMPKLENE 410 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCcc-ceEEEeeeeCCCCCchhhcccccch
Confidence 99999999 9999999888 7888888832 4799999999999999876544333
|
|
| >PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-14 Score=126.81 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=139.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCchhH-HHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNF-NQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~~~-~~l~~~i~~~k~ 104 (320)
.+.|||++|.||..... +. .+.++.+||++.+..+.. .++..|.|.|- |||+.. +.+.++++.+++
T Consensus 107 sq~GC~l~C~fC~tg~~---g~--~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----GEPLln~d~v~~~i~~l~~ 176 (343)
T PRK14469 107 TQVGCPVKCIFCATGQS---GF--VRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----GEPLLNYENVIKSIKILNH 176 (343)
T ss_pred ecCCCCCcCcCCCCCCC---Cc--cccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----ChhhhhHHHHHHHHHHHhc
Confidence 57999999999975431 21 233889999998865432 35788888762 577654 578899998852
Q ss_pred -----cCc-eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeee-
Q 020848 105 -----MGM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVC- 170 (320)
Q Consensus 105 -----~~~-~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~-Gi~v~- 170 (320)
.+. .+ ..|+|. .+.+++|.+.|++ .+.+|+++. ++.++.+.+ ..++++++++++.+.+. +.++.
T Consensus 177 ~~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i 254 (343)
T PRK14469 177 KKMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTI 254 (343)
T ss_pred hhcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 233 33 356775 6789999999998 699999999 888888754 45899999999976654 55544
Q ss_pred -eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 171 -SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 171 -~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
.-++-|.+++.+|+.++.++++.++ ..|.+.+|.|.++ ...+++.+++.++...++...-...++
T Consensus 255 ~yvlI~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 255 EYILIKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 4455566889999999999999885 3678888888655 335567777666666655443333444
|
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=136.89 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=141.0
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc--CCCEEE--EecccCCCCCC----------
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFC--MGAAWRDTIGR---------- 88 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~--g~~~i~--l~~g~~~~~ge---------- 88 (320)
...|. .+.||+.+|+||+...+. + ......|.|+|+++++.+.+. |++.+. |+|.+...+|-
T Consensus 373 ~~sV~-i~RGC~g~CSFCaI~~hq--G-r~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~ 448 (707)
T PRK01254 373 RFSVN-IMRGCFGGCSFCSITEHE--G-RIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQT 448 (707)
T ss_pred EEEEE-EccCCCCCCCcccccccc--C-CeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccc
Confidence 34555 689999999999987542 2 223457999999999999863 999988 66544444442
Q ss_pred ------------c---hhHHHHHHHHHHhhhc-Cce-EEEeCC----C--CCHHHHHHHHHhccC-eeccCcccc-HHHH
Q 020848 89 ------------K---TNFNQILEYVKDIRDM-GME-VCCTLG----M--LEKHQAIELKKAGLT-AYNHNLDTS-REFY 143 (320)
Q Consensus 89 ------------~---~~~~~l~~~i~~~k~~-~~~-i~~~~g----~--l~~e~l~~L~~aGld-~v~i~let~-~~~~ 143 (320)
+ .....+.+++++++++ |+. +.+..| . .+++.++.|.+..+. .+.+.+|+. ++++
T Consensus 449 C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 449 CRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred cccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHH
Confidence 0 1235788888888864 553 433333 1 258889999887765 678899999 9999
Q ss_pred hhhCCC--CCHHHHHHHHHHHHH-cCC--eeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC---CCCC
Q 020848 144 SKIITT--RSYDERLETLKHVRE-AGI--NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPL 214 (320)
Q Consensus 144 ~~i~~~--~~~~~~l~~i~~a~~-~Gi--~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~---gt~~ 214 (320)
+.|+++ ..+++..+.++.+++ .|. .+...+|+|+ |+|++|+.++++++++++ .+.-.++-|+|.| +|.|
T Consensus 529 k~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~M 606 (707)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTM 606 (707)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHH
Confidence 999886 578888998888766 454 3667899998 999999999999999998 5556677899999 6655
Q ss_pred C
Q 020848 215 Q 215 (320)
Q Consensus 215 ~ 215 (320)
.
T Consensus 607 Y 607 (707)
T PRK01254 607 Y 607 (707)
T ss_pred H
Confidence 3
|
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-14 Score=133.90 Aligned_cols=182 Identities=11% Similarity=0.175 Sum_probs=126.9
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHc-CCCEEE--EecccCCCCCCchhHHHHHH
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEA-GSTRFC--MGAAWRDTIGRKTNFNQILE 97 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~-g~~~i~--l~~g~~~~~ge~~~~~~l~~ 97 (320)
++..+..++..||++|.||........ .......|+.|++.+.++.+.+. +...+. ++||+ |+......+..+++
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGE-PlL~~~~~~~~~~~ 91 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGE-TLMRPLSFYKKALE 91 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccc-cCCCcHHHHHHHHH
Confidence 344555455799999999987432110 00112348999999999887764 555544 45542 22211112334445
Q ss_pred HHHHh-hhcCceE-EEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeee
Q 020848 98 YVKDI-RDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 98 ~i~~~-k~~~~~i-~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
+++.. +..++.+ ..|||. ++++.++.|++.|+ .|.+|+|+.+++++..++ ..+|++++++++.+++.|+.+.
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~ 170 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN 170 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE
Confidence 54432 2345653 467885 78999999999997 899999999767776653 3589999999999999999887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+.+++ ...|.+++.++++++.++| +..+.+.++.|
T Consensus 171 i~~vv-~~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~ 205 (412)
T PRK13745 171 AMAVV-NDFNADYPLDFYHFFKELD--CHYIQFAPIVE 205 (412)
T ss_pred EEEEE-cCCccccHHHHHHHHHHcC--CCeEEEEeccC
Confidence 76666 5678888999999999998 77888888877
|
|
| >PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-14 Score=126.41 Aligned_cols=189 Identities=14% Similarity=0.257 Sum_probs=138.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCchh-HHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~ 101 (320)
...||+++|.||..... + ..+.++++||++.+..... .|+..|++.|+ |||+. ++.+.++++.
T Consensus 115 sqvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~Gm-----GEPLln~~~v~~~l~~ 184 (356)
T PRK14455 115 TQVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGI-----GEPFDNYDNVMDFLRI 184 (356)
T ss_pred CCCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecc-----ccccCCHHHHHHHHHH
Confidence 67899999999976532 2 2344899999998875322 24777877664 56754 7999999999
Q ss_pred hhh-cCc-----eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCe
Q 020848 102 IRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 168 (320)
Q Consensus 102 ~k~-~~~-----~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~-~Gi~ 168 (320)
+++ .|+ .+ ..|+|.. ..+..|.+.+++ .+.+++++. ++.++++.+ ..+.++++++++.+.+ .+.+
T Consensus 185 l~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~ 262 (356)
T PRK14455 185 INDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRR 262 (356)
T ss_pred HhcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCe
Confidence 985 455 43 4567765 356677777654 356899999 899997665 4578999999998766 4555
Q ss_pred eee--eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 020848 169 VCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 235 (320)
Q Consensus 169 v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~ 235 (320)
+.+ -+|-|.+++.+++.+++++++.++ ..|.+.+|.|.++.++. +++.+++.++...++..
T Consensus 263 v~iey~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky~---~ps~e~l~~f~~~L~~~ 325 (356)
T PRK14455 263 VTFEYILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDYV---RTPKEDIFAFEDTLKKN 325 (356)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCCc---CCCHHHHHHHHHHHHHC
Confidence 555 444466889999999999999985 47899999998887654 35677766666655543
|
|
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=124.64 Aligned_cols=221 Identities=17% Similarity=0.282 Sum_probs=157.9
Q ss_pred CCeeEEEEEeecccCCCCC-CCCCCCCCC-----CCCCCCC-------CcCCCCHHHHHHHHHHHHHcCCC----EEEEe
Q 020848 17 MEEVQQCTLLSIKTGGCSE-DCSYCPQSS-----RYDTGVK-------GQKLMTKDAVMQAAQKAKEAGST----RFCMG 79 (320)
Q Consensus 17 ~~~v~~~~~l~~~t~~C~~-~C~fC~~~~-----~~~~~~~-------~~~~~s~eei~~~~~~~~~~g~~----~i~l~ 79 (320)
..+|.+..++. .-.+||+ +|.||.... .+..+.. +...-+.+++...++.+...|-+ ++.|.
T Consensus 62 ~sgvaVVaVmt-~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliim 140 (515)
T COG1243 62 ISGVAVVAVMT-SPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 (515)
T ss_pred cccceEEEEec-CCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 34444444444 5789998 999997652 1111110 12224678888888888888743 24445
Q ss_pred cccCCCCCCchhHHHHHHHHHHhhh--------------------cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 80 AAWRDTIGRKTNFNQILEYVKDIRD--------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 80 ~g~~~~~ge~~~~~~l~~~i~~~k~--------------------~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
||+.+... ....++++..+..+.. .|+.+.+.+....++.+..|++.|+++|.+++||.
T Consensus 141 GGTFta~~-~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSi 219 (515)
T COG1243 141 GGTFTALS-LEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSI 219 (515)
T ss_pred cccccCCC-HHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeH
Confidence 55433222 2233444433333221 13556677778999999999999999999999999
Q ss_pred -HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHH-HHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC
Q 020848 140 -REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE-DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 140 -~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e-d~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~ 216 (320)
+++++...++|+.+++.++-+.++++|++++.++|.|+ |.+.+ |+....+.+.+=.-.++.+.+++-..++||++.+
T Consensus 220 yd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~ 299 (515)
T COG1243 220 YDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYE 299 (515)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHH
Confidence 99999999999999999999999999999999999999 66655 5555555544332248999999999999998853
Q ss_pred ------CCCCCHHHHHHHHHHHHHhCCCc
Q 020848 217 ------QKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 217 ------~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
..+.+.+|...+++.+-.++|.+
T Consensus 300 mwk~G~Ykpy~~EEaVeli~~i~~~~p~w 328 (515)
T COG1243 300 MWKRGLYKPYTTEEAVELIVEIYRLEPKW 328 (515)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46889999999998877777764
|
|
| >PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=124.98 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=145.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---c------C--CCEEEEecccCCCCCCch-hHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---A------G--STRFCMGAAWRDTIGRKT-NFNQIL 96 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~------g--~~~i~l~~g~~~~~ge~~-~~~~l~ 96 (320)
.+.||+++|.||+... .+ -.+.++.+||++.+..+.. . | ++.|+|.| .|||+ .++.+.
T Consensus 127 sQvGC~m~C~FCatg~---~g--~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d~V~ 196 (373)
T PRK14459 127 SQAGCGMACPFCATGQ---GG--LTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYKRVV 196 (373)
T ss_pred ecCCCCCcCCCCCCCC---CC--CCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHHHHH
Confidence 6889999999997542 12 1344899999999976643 1 1 56677765 15786 489999
Q ss_pred HHHHHhhh-----cCc---eEEE-eCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHH
Q 020848 97 EYVKDIRD-----MGM---EVCC-TLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHV 162 (320)
Q Consensus 97 ~~i~~~k~-----~~~---~i~~-~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a 162 (320)
++++.+++ .++ .+.+ |.|.. ..+++|.+.+++ .+.+|+++. ++.++++.+. .+.++++++++..
T Consensus 197 ~~i~~l~~~~~~g~gis~r~ITvST~Gl~--~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~ 274 (373)
T PRK14459 197 AAVRRITAPAPEGLGISARNVTVSTVGLV--PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYY 274 (373)
T ss_pred HHHHHHhCcccccCCccCCEEEEECcCch--hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 99999986 355 3444 34643 478899998887 799999999 9999999873 5889999997775
Q ss_pred H-HcCCeeeee--EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 020848 163 R-EAGINVCSG--GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 163 ~-~~Gi~v~~~--~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
. +.|.++.+. ++-|.++++++..++.++++.++.....|.+.+|.|+++.++. .++.+.+.++....+..--..
T Consensus 275 ~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~---~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 275 ADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWT---ASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred HHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCc---CCCHHHHHHHHHHHHHCCCeE
Confidence 4 668775555 4556689999999999999988422357899999999887664 356666666666555433233
Q ss_pred eeecC
Q 020848 240 MVRLS 244 (320)
Q Consensus 240 ~i~~~ 244 (320)
.+|.+
T Consensus 352 tiR~~ 356 (373)
T PRK14459 352 TVRDT 356 (373)
T ss_pred EeeCC
Confidence 34433
|
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=126.25 Aligned_cols=173 Identities=21% Similarity=0.251 Sum_probs=139.3
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
..++ +|+.||++|.||....... ....++.++..+.+..+.+.| ...+.++| |||+..+++.++++.+
T Consensus 21 ~~~~-~t~~Cnl~C~~C~~~~~~~----~~~el~~~~~~~~~~~~~~~g~~~~v~~~g------GEPll~~d~~ei~~~~ 89 (347)
T COG0535 21 VGIE-LTNRCNLACKHCYAEAGKK----LPGELSTEEDLRVIDELAELGEIPVVIFTG------GEPLLRPDLLEIVEYA 89 (347)
T ss_pred EEEe-eccccCCcCcccccccCCC----CccccCHHHHHHHHHHHHHcCCeeEEEEeC------CCccccccHHHHHHHH
Confidence 3445 7999999999997764311 123388999988888888888 65555554 5787889999999999
Q ss_pred hhc-CceE-EEeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 103 RDM-GMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 103 k~~-~~~i-~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
++. ++.+ ..|||. ++++.++.|+++|++.+.+++|+. ++.+..++. ...++..+++++.+.+.|+.+.+.+++ .
T Consensus 90 ~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v-~ 168 (347)
T COG0535 90 RKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV-T 168 (347)
T ss_pred hhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-e
Confidence 854 6664 567774 778999999999999999999999 888788776 568999999999999999885555555 5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
..+.+++.+.++.+.+++ +..+.+..++|.+
T Consensus 169 ~~n~~~l~~~~~~~~~~g--~~~~~~~~~~~~g 199 (347)
T COG0535 169 KINYDELPEIADLAAELG--VDELNVFPLIPVG 199 (347)
T ss_pred cCcHHHHHHHHHHHHHcC--CCEEEEEEEeecc
Confidence 678999999999999998 6788888888876
|
|
| >PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=111.14 Aligned_cols=91 Identities=43% Similarity=0.662 Sum_probs=70.1
Q ss_pred eeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC-CChh
Q 020848 203 INALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN-NDFD 281 (320)
Q Consensus 203 ~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~-~~~~ 281 (320)
++.|+|.+|||+++.++++.++++++++++|+++|+..|++++|+.....+.+..++.+|+|++++|+ |+|+.+ ++++
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~-ylt~~g~~~~~ 80 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGG-YLTTSGNRSVD 80 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CS-BTSSSCTSHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECC-ccccCCCCCHH
Confidence 44599999999998899999999999999999999999999999865344467799999999999999 777776 9999
Q ss_pred HHHHHHHHcCCCc
Q 020848 282 ADQLMFKVLGLTP 294 (320)
Q Consensus 282 ~~~~~i~~~G~~p 294 (320)
++++||+++||+|
T Consensus 81 ~d~~~i~~lG~~P 93 (93)
T PF06968_consen 81 EDIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHHTT-ES
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999987
|
8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A. |
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-14 Score=123.34 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=136.8
Q ss_pred ccC-CCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 29 KTG-GCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~-~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~------g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
.+- .|+++|.||...........+..+...+.|.+..+.+... .++.+.|++. |||.++++|-++|+.
T Consensus 29 P~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~ 103 (296)
T COG0731 29 PSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEE 103 (296)
T ss_pred cchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHH
Confidence 455 8999999997743322222345558899999999887765 4677888753 789999999999999
Q ss_pred hhhcC-ce-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC---CHHHHHHHHHHHHHc-CCe--eeee
Q 020848 102 IRDMG-ME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREA-GIN--VCSG 172 (320)
Q Consensus 102 ~k~~~-~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~---~~~~~l~~i~~a~~~-Gi~--v~~~ 172 (320)
+|+.| +. +.+|||.+ ++.++.|.. .|.+.+++|+. ++.|+++++++ +|++++++++.+++. .-. +.+.
T Consensus 104 ~k~~g~~~tflvTNgsl-pdv~~~L~~--~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~t 180 (296)
T COG0731 104 IKKRGKKTTFLVTNGSL-PDVLEELKL--PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTT 180 (296)
T ss_pred HHhcCCceEEEEeCCCh-HHHHHHhcc--CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEE
Confidence 99887 55 57899988 888888873 79999999999 89999999864 799999999999996 334 4555
Q ss_pred EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 173 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 173 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
++=|++.+.+++.+..++++... ++.|.+..++-.|
T Consensus 181 lvkg~N~~~e~~~~~a~ll~~~~--Pd~velk~~~rpg 216 (296)
T COG0731 181 LVKGINDDEEELEEYAELLERIN--PDFVELKTYMRPG 216 (296)
T ss_pred EeccccCChHHHHHHHHHHHhcC--CCeEEEecCccCC
Confidence 56566777777999999999997 7888888877544
|
|
| >PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-13 Score=123.14 Aligned_cols=198 Identities=17% Similarity=0.243 Sum_probs=140.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-C-----CCEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G-----STRFCMGAAWRDTIGRK-TNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g-----~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~ 101 (320)
++.+|+++|.||..... + ..+.++.+||++.+...... | ++.|.|.|. ||| ..++.+.+.++.
T Consensus 99 sq~GC~l~C~fC~tg~~---g--~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~Gm-----GEPlln~~~v~~~i~~ 168 (343)
T PRK14468 99 TMVGCPAGCAFCATGAM---G--FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGM-----GEPLLNYENVLKAARI 168 (343)
T ss_pred ecCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEecc-----CccccCHHHHHHHHHH
Confidence 68899999999976431 2 23448999999988765443 2 457878763 456 346889999988
Q ss_pred hh-hcCc-----eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHH-HcCCe
Q 020848 102 IR-DMGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVR-EAGIN 168 (320)
Q Consensus 102 ~k-~~~~-----~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~-~~Gi~ 168 (320)
+. ..++ .+ ..|+|. ...+++|.+.|++ .+.+|+++. ++.++++.+ ..++++++++++... +.+.+
T Consensus 169 l~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~ 246 (343)
T PRK14468 169 MLHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRR 246 (343)
T ss_pred hcccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCe
Confidence 74 3333 23 356774 4678899998887 689999999 899999975 347899999998544 45555
Q ss_pred eeeeE--EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 169 VCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 169 v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
+.+.. +-|.+++.+++.++.++++.+. ..+.+.+|.|+++.. ..+++.+++.+..+.++..--...+|-+
T Consensus 247 V~ieyvLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~~---~~~ps~e~i~~f~~~L~~~Gi~vtiR~~ 318 (343)
T PRK14468 247 VTLEYTMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGSP---FQSSPRAQILAFADVLERRGVPVSVRWS 318 (343)
T ss_pred EEEEEEEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCCC---CCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 55544 4466799999999999999884 478888888876643 3567777766666655543333344433
|
|
| >smart00876 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=109.61 Aligned_cols=93 Identities=51% Similarity=0.750 Sum_probs=84.2
Q ss_pred eeeeeeecCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCCh
Q 020848 202 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDF 280 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~-~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~ 280 (320)
+++.|+|++|||+++. +..+.++++++++++|+++|+..+++++|+..+.++.+..++.+|||.+++|+.|+|+.+...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 3678999999999887 789999999999999999999999999988766667778889999999999987999999998
Q ss_pred hHHHHHHHHcCCCc
Q 020848 281 DADQLMFKVLGLTP 294 (320)
Q Consensus 281 ~~~~~~i~~~G~~p 294 (320)
.++++|++++||+|
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 88999999999986
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. |
| >TIGR00048 radical SAM enzyme, Cfr family | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-13 Score=122.06 Aligned_cols=188 Identities=15% Similarity=0.236 Sum_probs=135.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCch-hHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~ 101 (320)
...+|+++|.||..... + ..+.++.+||++.+..+.. .+++.|+|.|. |||+ .++.+.++++.
T Consensus 111 sQ~GC~l~C~fC~t~~~---g--~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~~l~~ 180 (355)
T TIGR00048 111 SQVGCALGCTFCATAKG---G--FNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVKAMEI 180 (355)
T ss_pred cCCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHHHHHH
Confidence 57799999999976431 2 1234899999998765432 23666777663 5674 45789999998
Q ss_pred hhh-cC--c---eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe
Q 020848 102 IRD-MG--M---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 168 (320)
Q Consensus 102 ~k~-~~--~---~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi~ 168 (320)
+++ .| + .+ ..|+|.+ +.+++|.+.+++ .+.+|+++. ++.++++.+. .++++++++++. +.+.|.+
T Consensus 181 l~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~ 258 (355)
T TIGR00048 181 MNDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRR 258 (355)
T ss_pred hhcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCE
Confidence 873 33 4 34 3567865 678899888887 578999999 8999998763 468999988876 4557777
Q ss_pred eeee--EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 169 VCSG--GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 169 v~~~--~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
+.+. ++-|.+++.+++.++.++++.++ .+|.+.+|.|+++.++ .+++.+++.++....+.
T Consensus 259 VtieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 259 VTFEYVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 5544 45566788899999999999985 3688889988877665 34667776665555543
|
A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains. |
| >KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=127.16 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=154.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GM 107 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~ 107 (320)
.|..||++|.||..+... +..+...+++.+++++.++.....|++.+-|.+ |+|..++++.+.+..+.+. ++
T Consensus 17 lte~cnlrc~ycMpsegv-~l~pk~~~lav~eilrl~~~F~~qgv~knrLtg------geptIr~di~~i~~g~~~l~gL 89 (323)
T KOG2876|consen 17 LTEKCNLRCQYCMPSEGV-PLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTG------GEPLIRQDIVPIVAGLSSLPGL 89 (323)
T ss_pred hhhccccccceechhcCC-cCccchhhcchhhhHHhhhhhhHhhhhhhhhcC------CCCcccccccchhhhhhcccch
Confidence 689999999999876432 123445668999999999999999999985554 6777778888887777643 44
Q ss_pred e--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHH
Q 020848 108 E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEED 183 (320)
Q Consensus 108 ~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed 183 (320)
+ -.+++|......+-+|.++|++.+++++|+. ++.+..+.+...+..++..++.+.+.|.. +.+++++--+.+.++
T Consensus 90 ks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e 169 (323)
T KOG2876|consen 90 KSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDE 169 (323)
T ss_pred hhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCc
Confidence 4 2477899999999999999999999999999 89999999999999999999999999886 778877744777777
Q ss_pred HHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 020848 184 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a 230 (320)
+.+++..-+.. +-.|.+..|+|..|..|......+..+.+.++.
T Consensus 170 v~Dfv~~tr~~---p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~ 213 (323)
T KOG2876|consen 170 VFDFVLLTRMR---PLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIV 213 (323)
T ss_pred ccceeeecCCC---CcceEEEEecccCCCcccccccccHHHHHHHHh
Confidence 77777655544 456899999999999988777778887766654
|
|
| >PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-13 Score=121.11 Aligned_cols=185 Identities=16% Similarity=0.208 Sum_probs=137.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCchh-HHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~~k~ 104 (320)
.+.+|+++|.||..... +.. +.++.+||++.+..+.+ ..++.|+|.|- |||+. ++.+.++++.+++
T Consensus 103 sq~GC~l~C~fC~tg~~---g~~--r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~~l~~ 172 (336)
T PRK14470 103 SQAGCALGCAFCATGKL---GLD--RSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAYALCD 172 (336)
T ss_pred CCCCcCCCCccccCCCC---CCC--CCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHHHHhC
Confidence 68899999999987532 211 23688888888866543 24778888762 57765 6889999999884
Q ss_pred c------CceE-EEeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHHcCCe--ee
Q 020848 105 M------GMEV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVREAGIN--VC 170 (320)
Q Consensus 105 ~------~~~i-~~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~~Gi~--v~ 170 (320)
. +..+ ..|+|.+ ..+++|.+.|. +.+.+|+++. ++.++++.+. .+++..+++++.+.+.+.+ +.
T Consensus 173 ~~~~~~~~~~ItVsTnG~~--p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ie 250 (336)
T PRK14470 173 PAGARIDGRRISISTAGVV--PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLE 250 (336)
T ss_pred ccccccCCCceEEEecCCh--HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEE
Confidence 2 2344 3567874 46667777776 7899999999 9999998774 4899999999998887665 44
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
..++-|.+++++|+.++.++++.+. .++.+.+|.|.++ ...+++.+++.++....
T Consensus 251 yvLI~GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l 305 (336)
T PRK14470 251 YVMISGVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDAL 305 (336)
T ss_pred EEEEecccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHH
Confidence 5556677899999999999999885 3678888888555 34567788777766655
|
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=124.39 Aligned_cols=169 Identities=15% Similarity=0.234 Sum_probs=129.2
Q ss_pred cCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEE--EeCC--CCCHHHHHHHH
Q 020848 53 QKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC--CTLG--MLEKHQAIELK 125 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~--~~~g--~l~~e~l~~L~ 125 (320)
...++++|++++++....+ ....+.+.|| |+|..++++.++++.+|+.++.+. .|+| ..+++.+++|+
T Consensus 51 g~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-----Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~ 125 (404)
T TIGR03278 51 GDFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-----GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLI 125 (404)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-----cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHH
Confidence 3448999999999876653 3457777775 467788999999999998777743 2675 45899999999
Q ss_pred HhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCH-HHHHHHHHHHhcCCCCCCeeee
Q 020848 126 KAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 126 ~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
++|+|.+.+++++. ++.++++.+....+.+++.++.+.+ ++.+.+-+++-.|-|+ +++.++++++.+++ +..+.+
T Consensus 126 ~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg--~~~V~L 202 (404)
T TIGR03278 126 DNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWG--AKALIL 202 (404)
T ss_pred HcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCC--CCEEEE
Confidence 99999999999999 9999998776667999999999988 5665555555345554 45579999999998 778899
Q ss_pred eeeeecCCC-------CC-CCCCCCCHHHHHHHH
Q 020848 204 NALLAVKGT-------PL-QDQKPVEIWEMIRMI 229 (320)
Q Consensus 204 ~~~~p~~gt-------~~-~~~~~~~~~e~~~~~ 229 (320)
.+|.+.... +. ....+.+.+++.+++
T Consensus 203 ~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v 236 (404)
T TIGR03278 203 MRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIV 236 (404)
T ss_pred EecccccccccccCCcCcccCCCCCCHHHHHHHH
Confidence 999864422 11 124466777777763
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-14 Score=119.85 Aligned_cols=203 Identities=24% Similarity=0.376 Sum_probs=149.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCC-----C--CcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGV-----K--GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~-----~--~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
+-++|-.+|.||++++....+. . ..+....+++++-..... ..+++++++- .. .|....++...++.
T Consensus 37 ~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~---i~--~p~~~~d~~~i~~~ 110 (339)
T COG2516 37 YPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQ---IA--YPRALNDLKLILER 110 (339)
T ss_pred cCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh-ccccccccee---ec--cccccchhhhhhhh
Confidence 5599999999998876432221 1 122244556555543322 2367888863 22 24456777777888
Q ss_pred hh-hcCceEEEe----CCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC----CCCHHHHHHHHHHHHHc-C-Cee
Q 020848 102 IR-DMGMEVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----TRSYDERLETLKHVREA-G-INV 169 (320)
Q Consensus 102 ~k-~~~~~i~~~----~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~----~~~~~~~l~~i~~a~~~-G-i~v 169 (320)
++ ..+.++.++ .-.+ .+.+...+++|.|.+.+.+|.. +++|+++++ .++|++.++.++.+.++ | .++
T Consensus 111 ~~~~~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv 189 (339)
T COG2516 111 LHIRLGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRV 189 (339)
T ss_pred hhhccCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCc
Confidence 77 666665433 2222 8999999999999999999999 899998843 37899999999998874 5 569
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
.+++++|+|+++.++.+.+..+...+ -.++++.|.|..||.|.+..+++.+. ++.++.++.++......
T Consensus 190 ~ihliVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~-Yrk~q~a~yli~~G~v~ 258 (339)
T COG2516 190 GIHLIVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVER-YRKIQVARYLIGNGEVD 258 (339)
T ss_pred ceeEEeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHH-HHHHHHHHHHHhcCccc
Confidence 99999999999999999999999997 36899999999999999988776666 45556666666654443
|
|
| >PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=118.91 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=138.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhh-c
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD-M 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~-~ 105 (320)
.+.+|+++|.||.... . +. .+.++.+||++.+..+.. .+++.|.|.|. ||| ..++.+.++++.+++ .
T Consensus 109 sq~GC~~~C~FC~tg~-~--~~--~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 109 SQVGCAMGCAFCLTGT-F--RL--TRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred ecCCcCCCCccCCCCC-C--CC--CCCCCHHHHHHHHHHHHhcCCccEEEEecC-----CcchhcHHHHHHHHHHhhccc
Confidence 7899999999997542 1 22 344899999998876654 47889988774 345 346788888888873 4
Q ss_pred Cc-----eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeeee--e
Q 020848 106 GM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVCS--G 172 (320)
Q Consensus 106 ~~-----~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~-Gi~v~~--~ 172 (320)
|+ .+ ..|+|.+ ..+.+|.+..--.+.+|+++. ++.++.+.+ ..+.++++++++..... +.++.+ .
T Consensus 179 gl~~s~r~itVsTnGl~--~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyv 256 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLV--PEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYV 256 (349)
T ss_pred ccCcCCceEEEECCCch--HHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 54 33 3467853 345555544322455899999 999999854 45788999888776653 345554 4
Q ss_pred EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 173 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 173 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
++-|.+++.+++.++.++++.++ ..|.+.+|.|.+|.. .++++.+++.+....++...-...+|-+
T Consensus 257 LI~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~~---~~~ps~e~i~~f~~~L~~~gi~v~vR~~ 322 (349)
T PRK14463 257 MIRGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGCD---FRSPTQEAIDRFHKYLLDKHVTVITRSS 322 (349)
T ss_pred EeCCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCCC---CCCCCHHHHHHHHHHHHHCCceEEEeCC
Confidence 45566889999999999999986 378888888877643 4567788777776666654444445544
|
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-13 Score=121.34 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=131.0
Q ss_pred ccCC-CCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCE--EEEecccCCCCCCchhHHHHHHHHHHhhh
Q 020848 29 KTGG-CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTR--FCMGAAWRDTIGRKTNFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~-C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~--i~l~~g~~~~~ge~~~~~~l~~~i~~~k~ 104 (320)
+|+. ||++|.||....... ....||.|.+.+.++.+.+. +.+. |.++||.+...| +..++.+..+.++.+.
T Consensus 13 pt~~~CNL~C~YC~~~~~~~----~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~-~~f~~~~~~l~~k~~~ 87 (378)
T COG0641 13 PTGFECNLDCKYCFYLEKES----LQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAG-LDFYRKAVALQQKYAN 87 (378)
T ss_pred cccCccCCCCCeeCcccCCC----CCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccch-HHHHHHHHHHHHHHhc
Confidence 5677 999999998764321 11259999999988877764 4466 556665322222 2223333333333333
Q ss_pred cCce---EEEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeeeeeEEEE
Q 020848 105 MGME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGGIIG 176 (320)
Q Consensus 105 ~~~~---i~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~v~~~~i~G 176 (320)
+.. ...|||. ++++.++.|++.|+ .|.+|+|+.++++++.++ ..+|++++++|+.+++.++++.+..++
T Consensus 88 -~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv- 164 (378)
T COG0641 88 -GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVV- 164 (378)
T ss_pred -CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEE-
Confidence 443 3467775 89999999999999 999999999888887763 458999999999999999888777775
Q ss_pred eCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC--CCCCCCCCHHHHHHHH
Q 020848 177 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIWEMIRMI 229 (320)
Q Consensus 177 lget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~--~~~~~~~~~~e~~~~~ 229 (320)
..++.+...++++++.+.+ ...+.|.+.++..++. +.+ ...+.+++.+.+
T Consensus 165 ~~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~-~~~~~~~~~~fl 216 (378)
T COG0641 165 NRQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLE-FSVTAEEYGQFL 216 (378)
T ss_pred chhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccc-cccCHHHHHHHH
Confidence 4788889999999999998 6677776665544332 222 234455544443
|
|
| >PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-12 Score=114.67 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=138.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh-c
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD-M 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~-~ 105 (320)
.+-||+++|.||.-... +.. +.++.+||+..+..+.. .+++.|+|.|- |||+ .++.+++.++.+++ .
T Consensus 109 sQvGC~~~C~FC~Tg~~---g~~--rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 109 SQVGCKMNCLFCMTGKQ---GFT--GNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred cCCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCcccHHHHHHHHHHHhhcc
Confidence 56799999999985431 222 23899999999987643 25888988762 4564 46888898888873 3
Q ss_pred Cc-----eEE-EeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCCeee--ee
Q 020848 106 GM-----EVC-CTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVC--SG 172 (320)
Q Consensus 106 ~~-----~i~-~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi~v~--~~ 172 (320)
|+ .+. .|+|.. ..+++|.+..-..+.+|+++. ++.++++.+. .++++++++++...+ .+-++. ..
T Consensus 179 g~~~s~r~ItVsT~G~~--~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~ 256 (345)
T PRK14466 179 GYGWSPKRITVSTVGLK--KGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYI 256 (345)
T ss_pred ccCcCCceEEEEcCCCc--hHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 43 343 456743 223444333234667999999 8999999884 478999999998554 344444 44
Q ss_pred EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 173 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 173 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
++=|.+++.+|+.++.++++.++ .+|.+.+|.|+|+.++ .+++.+.+.+.....+...-...+|-+
T Consensus 257 Li~gvND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~~---~~~s~~~~~~F~~~L~~~gi~~tvR~s 322 (345)
T PRK14466 257 VFKGLNDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVDL---EGSDMARMEAFRDYLTSHGVFTTIRAS 322 (345)
T ss_pred EeCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCCC---cCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 55567899999999999999885 5799999999998644 456777776776666654444455543
|
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=120.09 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCchhHHHH-HHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~~~~~l-~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld 130 (320)
++.+++.+.+..... .+...|.|+| |||+..+++ .++++.+++.|+.+ ..|||.+..+.+.+|... +|
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~-~d 178 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSG------GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPY-VD 178 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeC------cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhh-CC
Confidence 578888888765432 2335676765 578777776 59999999888764 568898888888888764 78
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.+.+++++. ++.|+.+++ .+++.++++++.+.+.|.++.+.+ +.|..++.+++.++++++.+++..+..+.+.+|.
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 899999999 889988754 578999999999999998766655 4445678899999999999987324678888888
Q ss_pred ecCCCCC---------CCCCCCCHHHHHHHHHHH
Q 020848 208 AVKGTPL---------QDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 208 p~~gt~~---------~~~~~~~~~e~~~~~a~~ 232 (320)
|.+..++ .+.+.++.+++.++...+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 291 (295)
T TIGR02494 258 RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIF 291 (295)
T ss_pred chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHH
Confidence 8764433 344567777776655443
|
This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 |
| >PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-12 Score=115.68 Aligned_cols=197 Identities=13% Similarity=0.200 Sum_probs=141.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCCEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRK-TNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~------g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~ 101 (320)
...||+.+|.||.-... +. .+.++.+||++.+..+... .+..+++.|+ ||| ..++.+.++++.
T Consensus 116 sQvGC~~~C~FCatg~~---g~--~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~l~~ 185 (356)
T PRK14462 116 SQVGCKVGCAFCLTAKG---GF--VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKAIKI 185 (356)
T ss_pred ccccCCCCCccCCCCCC---CC--cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHHHHH
Confidence 56799999999976431 21 2448999999999765442 1446766654 566 467889999999
Q ss_pred hhh-cCce-----EE-EeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe
Q 020848 102 IRD-MGME-----VC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 168 (320)
Q Consensus 102 ~k~-~~~~-----i~-~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi~ 168 (320)
+++ .|+. +. .|.|.. +.+++|.+.++ -.+.+|+.+. ++.++++.+. .+.++++++++. +.+.|-+
T Consensus 186 l~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~ 263 (356)
T PRK14462 186 FSENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKR 263 (356)
T ss_pred hcCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCe
Confidence 996 4652 33 356755 47778887755 3466789999 8999998873 356889998885 4466666
Q ss_pred --eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 169 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 169 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
+..-+|-|.+++.+++.++.++++.++ ..|.+.+|.|.++.++ ++++.+++.+....++...-...++-
T Consensus 264 i~ieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~~gi~vtvR~ 334 (356)
T PRK14462 264 VMFEYLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNSKGLLCTIRE 334 (356)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 455566677899999999999999985 4899999999888766 45677777776666654333334443
|
|
| >PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-12 Score=113.11 Aligned_cols=196 Identities=14% Similarity=0.259 Sum_probs=139.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~ 104 (320)
+..||+++|.||..... +. .+.++.+||++.+..+... ++..|+|.|- |||+ .++.+.++++.+++
T Consensus 107 sqvGC~~~C~FC~tg~~---g~--~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----GEPlln~~~v~~~i~~l~~ 176 (345)
T PRK14457 107 SQVGCPMACDFCATGKG---GL--KRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----GEPLLNIDEVLAAIRCLNQ 176 (345)
T ss_pred CCCCCCCcCCcCCCCCC---CC--ccccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----CccccCHHHHHHHHHHHhc
Confidence 56799999999976431 21 2238999999998876543 5778888762 4663 46789999999874
Q ss_pred -cCc---eEE-EeCCCCCHHHHHHHHHhc------cC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCC
Q 020848 105 -MGM---EVC-CTLGMLEKHQAIELKKAG------LT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGI 167 (320)
Q Consensus 105 -~~~---~i~-~~~g~l~~e~l~~L~~aG------ld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi 167 (320)
.++ .+. .|.|. .+.+++|.+.+ ++ .+.+|+++. ++.++++.+. .+.++.+++++. +.+.|-
T Consensus 177 ~~~i~~r~itvST~G~--~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr 254 (345)
T PRK14457 177 DLGIGQRRITVSTVGV--PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGR 254 (345)
T ss_pred ccCCccCceEEECCCc--hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCC
Confidence 455 343 34564 34588888776 33 478999999 9999998773 367888877765 666775
Q ss_pred e--eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 168 N--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 168 ~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
+ +..-+|-|.+++++++.++.++++.++ .+|.+.+|.|.++.++ .+++.+++.+..+.++..--...++
T Consensus 255 ~I~iey~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~Gi~vtvR 325 (345)
T PRK14457 255 RVSFEYILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQRGVAVSVR 325 (345)
T ss_pred EEEEEEEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 5 555566677899999999999999985 3789999999887665 3567777666666655433333333
|
|
| >TIGR00238 KamA family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=117.72 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=132.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHH--HHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~~k~~ 105 (320)
.|.+||.+|.||....... . .. . .+.+++.+.++.+.. .|++.|.|+||+ |+...+ +.++++.+++.
T Consensus 119 ~T~gCn~~C~yC~~~~~~~-~-~~-~-~~~~~~~~~i~~i~~~~~i~eV~lsGGD------PLl~~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 119 VKGGCAVNCRYCFRRHFPY-K-EN-P-GNKKKWQKALDYIAEHPEIIEILISGGD------PLMAKDHELEWLLKRLEEI 188 (331)
T ss_pred eCCCCCCCCcCCCCCCcCC-C-CC-C-ccHHHHHHHHHHHHhCCCcCEEEEECCc------cccCCHHHHHHHHHHHHhc
Confidence 7999999999998643211 1 11 1 236788888877765 478999998754 443333 66677766653
Q ss_pred ----CceEEE-eCC----CCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE-
Q 020848 106 ----GMEVCC-TLG----MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI- 174 (320)
Q Consensus 106 ----~~~i~~-~~g----~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i- 174 (320)
++.+.+ +++ .++++.++.|+++|+..+.++.... +++ .+...++++.++++|+.+....+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecce
Confidence 344433 223 2699999999999998888886665 443 25678999999999998655544
Q ss_pred -EEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 175 -IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 175 -~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
-|..++.+++.++.+.+.++| +....++.+.|.+|+. .-..+.++..+++..+|..++.
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~~---~f~~~~~~~~~i~~~l~~~~sG 319 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGAK---HFLVPDAEAAQIVKELARLTSG 319 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCcc---cccCCHHHHHHHHHHHHhcCCC
Confidence 455678888999999999998 5567778888888862 2357788888888888877665
|
Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. |
| >PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-12 Score=113.66 Aligned_cols=199 Identities=16% Similarity=0.284 Sum_probs=138.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIR 103 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k 103 (320)
.+.||+++|.||..... +. .+.++.+||++.+..+.. .++..|+|.|- ||| ..++.+.++++.++
T Consensus 105 sq~GC~l~C~FC~t~~~---G~--~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGm-----GEPL~N~d~v~~~l~~l~ 174 (348)
T PRK14467 105 SQVGCAVGCKFCATAKD---GL--IRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGM-----GEPLANYENVRKAVQIMT 174 (348)
T ss_pred cCCCCCCcCcCCCCCCC---CC--cCCCCHHHHHHHHHHHHHHhccCCCCeEEEEcc-----ChhhcCHHHHHHHHHHHc
Confidence 78999999999976531 21 244899999999876554 24678888762 566 46799999999998
Q ss_pred h-cCc-----eEE-EeCCCCCHHHHHHHHHh----ccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCC
Q 020848 104 D-MGM-----EVC-CTLGMLEKHQAIELKKA----GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGI 167 (320)
Q Consensus 104 ~-~~~-----~i~-~~~g~l~~e~l~~L~~a----Gld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~-~~Gi 167 (320)
+ .|+ .+. .|+|.. ..++++... .++ +.+|+.+. ++.++++.+. .+++..+++++... +.|.
T Consensus 175 ~~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~ 251 (348)
T PRK14467 175 SPWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR 251 (348)
T ss_pred ChhccCcCCCcEEEECCCCh--hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 4 565 443 456765 334455442 343 44899999 9999999874 36777777777544 5566
Q ss_pred ee--eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 168 NV--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 168 ~v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
++ ..-++-|.+++.+++.++.++++.++ ...+|.+.+|.|.++.++ ++++.+++.+....++..--...+|-+
T Consensus 252 ~V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~gi~v~vR~~ 326 (348)
T PRK14467 252 RIMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPY---ERPELERVYKFQKILWDNGISTFVRWS 326 (348)
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 64 44555566889999999999999884 246788899998887765 557777766666655554334444543
|
|
| >TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=118.14 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=130.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHH--HHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~~k~~ 105 (320)
.|.+||.+|.||...... . .. ..++.+++.+.++.+.. .+++.|.|+||+ |+...+ +.+++..++..
T Consensus 102 ~t~~Cn~~Cr~C~~~~~~--~-~~-~~~~~~~~~~~i~~i~~~~~i~~VvltGGE------PL~~~d~~L~~ll~~l~~i 171 (321)
T TIGR03821 102 VTGGCAINCRYCFRRHFP--Y-QE-NQPNKAQWKEALEYIAQHPEINEVILSGGD------PLMAKDHRLDWLLNLLEQI 171 (321)
T ss_pred eCCCcCCcCcCCCCCCcC--C-CC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCcc------cccCCchHHHHHHHHHHhC
Confidence 799999999999764321 1 11 12566777777776665 489999998753 433222 44555444322
Q ss_pred ------CceE---EEeCCCCCHHHHHHHHHhccCeec-cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 106 ------GMEV---CCTLGMLEKHQAIELKKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 106 ------~~~i---~~~~g~l~~e~l~~L~~aGld~v~-i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
++.. .+.+..++++.++.|+++|...+. +++++.++++ +...++++.++++|+.+....++
T Consensus 172 ~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvl 242 (321)
T TIGR03821 172 PHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVL 242 (321)
T ss_pred CCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEeccee
Confidence 2221 122235789999999999987774 5887765443 34678999999999987666555
Q ss_pred --EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 176 --GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 176 --Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|.+++.+++.++.+.+.++| +....++.+.|.+|+.- -..+.++..+++..++..++.
T Consensus 243 lkgiNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~~---f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 243 LRGVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAAH---FDVDDERARALMAELLARLPG 302 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCccc---ccCCHHHHHHHHHHHHHhCCC
Confidence 44689999999999999998 66677888888887542 357788888888888777664
|
Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc. |
| >TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=114.08 Aligned_cols=187 Identities=13% Similarity=0.172 Sum_probs=133.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHH--HHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~~k~~ 105 (320)
.|+.|+..|.||...... + .....++.+++.+.++.+.+. +++.|.|+||+ |+.+++ +..+++.++++
T Consensus 114 vT~~C~~~CryC~R~~~~--g-~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD------PLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 114 VSNTCAMYCRHCTRKRKV--G-DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD------PLLLSDDYLDWILTELRAI 184 (417)
T ss_pred EcCCcCCCCcCCCCcccC--C-cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc------cccCChHHHHHHHHHHhhc
Confidence 699999999999765421 1 122347899999999988874 89999998864 433322 33334555543
Q ss_pred -Cce---EEEe-----CCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeee--EE
Q 020848 106 -GME---VCCT-----LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSG--GI 174 (320)
Q Consensus 106 -~~~---i~~~-----~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~--~i 174 (320)
+++ +.++ +..++++.++.|++.+..+|.++++..+++ .++..++++.++++|+.+... ++
T Consensus 185 phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsVLL 255 (417)
T TIGR03820 185 PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSVLL 255 (417)
T ss_pred CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeeceEE
Confidence 333 3222 335789999999999987888888776443 577899999999999986544 44
Q ss_pred EEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 175 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 175 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
-|.+++.+-+.++.+.+.++++ .-..++..-+.+|+.-. ..+.++.+++++.+|..++.
T Consensus 256 kGVND~~~~l~~L~~~L~~~gV--~PYYl~~~d~v~G~~hF---rv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 256 AGVNDCPRIMKKLVHKLVANRV--RPYYLYQCDLSEGLSHF---RTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred CCcCCCHHHHHHHHHHHHHCCC--eeceeeeccCCCCcccc---cCcHHHHHHHHHHHHHhCCC
Confidence 4667898999999999999984 33455566667776432 46688888999888887764
|
This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region. |
| >PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-11 Score=110.18 Aligned_cols=196 Identities=17% Similarity=0.302 Sum_probs=136.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~ 104 (320)
...||+++|.||+.... +. .+.++.+||++.+...... .+..+++.|| |||+ .++.+.++++.+++
T Consensus 107 sqvGC~~~C~FC~tg~~---G~--~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~~l~~ 176 (342)
T PRK14454 107 TQVGCRMGCKFCASTIG---GM--VRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLKIVNS 176 (342)
T ss_pred cCCCCCCcCCcCCCCCC---CC--cccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHHHHhc
Confidence 68999999999976421 21 2348999999999866542 2445444332 5674 56789999999995
Q ss_pred -cCc-----eEE-EeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCee--
Q 020848 105 -MGM-----EVC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGINV-- 169 (320)
Q Consensus 105 -~~~-----~i~-~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi~v-- 169 (320)
.|+ .+. -|+|... .+.+|.+.++ ..+.+++.+. ++.++++.+. ...++.+++++. ..+.|.++
T Consensus 177 ~~gi~~~~r~itvsTsG~~p--~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~i 254 (342)
T PRK14454 177 PYGLNIGQRHITLSTCGIVP--KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITF 254 (342)
T ss_pred ccccCcCCCceEEECcCChh--HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEE
Confidence 566 443 3567653 3677777643 3478899999 8999998873 256677766655 55666664
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
..-+|-|.+++.+++.++.++++.+. ..|.+.+|.|.++..+ .+++.+++.+....++...-...++
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~---~~VnLiPyn~~~~~~~---~~ps~e~l~~f~~~l~~~gi~v~iR 321 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGML---CHVNLIPVNEVKENGF---KKSSKEKIKKFKNILKKNGIETTIR 321 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEEecCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 45556677899999999999999874 4788899988877654 4567777666666665543344444
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-11 Score=103.29 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhH-HHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNF-NQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~-~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld 130 (320)
+++|++++.+.....+ +...|+++| |||+.. +.+.++++.+|+.|+.+ ..|+|..+.+.++.|... +|
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SG------GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~D 91 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSG------GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-CD 91 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeC------chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-cC
Confidence 8999999998765432 334677765 567554 45789999999889884 568999999999999876 99
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.+.+++.+. ++.|+.+. +.+.+.++++++.+.+.|.+ +.+.+|-|+.++.+++.++.+++.+++ ++.+.+.+|.
T Consensus 92 ~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~--~~~~~llpyh 168 (213)
T PRK10076 92 EVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG--IKQIHLLPFH 168 (213)
T ss_pred EEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEecCC
Confidence 999999999 89998885 56789999999999999877 556667777789999999999999986 6688888988
Q ss_pred ecCC---------CCCCCCCCCCHHHHHHHHHHHHH
Q 020848 208 AVKG---------TPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 208 p~~g---------t~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
|..- -++.+.++++.+++.+...+++.
T Consensus 169 ~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~ 204 (213)
T PRK10076 169 QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHH
Confidence 8642 23445567777776666655553
|
|
| >PRK14453 chloramphenicol/florfenicol resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-11 Score=108.82 Aligned_cols=203 Identities=16% Similarity=0.231 Sum_probs=137.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g--~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~- 105 (320)
...||+++|.||..... + ..+.++.+||++.+..+...| ++.|.|.|- |||+...++.++++.+++.
T Consensus 106 sqvGC~~~C~FC~tg~~---g--~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGm-----GEPLln~~v~~~i~~l~~~~ 175 (347)
T PRK14453 106 SQCGCGFGCRFCATGSI---G--LKRNLTADEITDQLLYFYLNGHRLDSISFMGM-----GEALANPELFDALKILTDPN 175 (347)
T ss_pred cCCCcCCCCCCCCCCCC---C--CcccCCHHHHHHHHHHHHhcCCCcceEEEeec-----CCccCCHHHHHHHHHHhccc
Confidence 67899999999987631 2 234489999999998766554 788888762 5776667899999888742
Q ss_pred --Cce---E-EEeCCCCCHHHHHHHHHhc-cCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCCe--eee
Q 020848 106 --GME---V-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGIN--VCS 171 (320)
Q Consensus 106 --~~~---i-~~~~g~l~~e~l~~L~~aG-ld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi~--v~~ 171 (320)
++. + ..|+|... .++.|.+.. --.+.+|+.+. ++.++++.+. ...++.+++++.... .|.+ +..
T Consensus 176 ~~~~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry 253 (347)
T PRK14453 176 LFGLSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAY 253 (347)
T ss_pred ccCCCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEE
Confidence 332 3 35677653 233333321 12345589998 8888877763 367777777776444 5655 445
Q ss_pred eEEEEeCCCHHHHHHHHHHHhcCCC--CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 172 GGIIGLGEAEEDRVGLLHTLATLPT--HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 172 ~~i~Glget~ed~~~~l~~l~~l~~--~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
-+|-|.+++.+++.+++++++.++. .+..|.+.+|.|.++.+. +..+++.+++.++...++..-=...+|-+
T Consensus 254 ~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~-~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~ 327 (347)
T PRK14453 254 IMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPF-KFQSSSAGQIKQFCSTLKSAGISVTVRTQ 327 (347)
T ss_pred EeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCc-cCCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 5566778999999999999998731 146799999999877532 34567788877777766654333444443
|
|
| >KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=107.42 Aligned_cols=192 Identities=20% Similarity=0.335 Sum_probs=142.3
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM 107 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~ 107 (320)
+.+.-|-..|.||+.....++ ..+++-|-.+.++++..-|+..|+|++-+++... +..-..|.+.++++|....
T Consensus 116 lmGDTCTRGCRFCsVKTsR~P-----pPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k~p 189 (360)
T KOG2672|consen 116 LMGDTCTRGCRFCSVKTSRNP-----PPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEKAP 189 (360)
T ss_pred eecCccccCcceeeeecCCCC-----cCCCCCCcccHHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhhCc
Confidence 369999999999998653221 1155556667777788899999999887766543 2355778899999985443
Q ss_pred eE---EEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHHc--CCeeeeeEEEEeCCC
Q 020848 108 EV---CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA--GINVCSGGIIGLGEA 180 (320)
Q Consensus 108 ~i---~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glget 180 (320)
++ +.++.. -+.+.++.+...|+|.+.+.+||.+++-..++- ..+|.+-+..++.+++. ++-..+.+|.|+||+
T Consensus 190 ~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglget 269 (360)
T KOG2672|consen 190 EILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGET 269 (360)
T ss_pred ccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCC
Confidence 32 223332 457789999999999999999999887777664 45899999999999985 444678899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHH
Q 020848 181 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIR 227 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~ 227 (320)
++++..+++.++..+ ++-+.+..|++-..-.+......+++.+..
T Consensus 270 deei~~tl~dLr~~~--vdv~t~gqym~ptkrhl~v~eyvtpekf~~ 314 (360)
T KOG2672|consen 270 DEEIKQTLKDLRAAD--VDVVTFGQYMQPTKRHLKVKEYVTPEKFDY 314 (360)
T ss_pred HHHHHHHHHHHHHcC--CcEEecccccCCccccceeEEeeCHHHHHH
Confidence 999999999999998 778888888764333333333455554333
|
|
| >PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-10 Score=106.41 Aligned_cols=188 Identities=16% Similarity=0.239 Sum_probs=131.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----------CCCEEEEecccCCCCCCch-hHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----------GSTRFCMGAAWRDTIGRKT-NFNQILE 97 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~----------g~~~i~l~~g~~~~~ge~~-~~~~l~~ 97 (320)
+.-||+.+|.||..... +. .+.++.+||++.+..+... +++.|++.|+ |||+ .++.+.+
T Consensus 109 sQvGC~~~C~FC~t~~~---g~--~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL~N~d~v~~ 178 (372)
T PRK11194 109 SQVGCALECKFCSTAQQ---GF--NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPLLNLNNVVP 178 (372)
T ss_pred cCCCCCCcCCCCCCCCC---CC--CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----CccccCHHHHHH
Confidence 56899999999976531 22 2348999999998655432 2667777654 5674 4788899
Q ss_pred HHHHhh-hcC--c---eEEE-eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHH-HHc
Q 020848 98 YVKDIR-DMG--M---EVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REA 165 (320)
Q Consensus 98 ~i~~~k-~~~--~---~i~~-~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a-~~~ 165 (320)
+++.++ ..| + .+.+ |.|.. ..+++|.+..--.+.+++.+. ++.++.+.+. ...++.+++++.. .+.
T Consensus 179 al~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~ 256 (372)
T PRK11194 179 AMEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKS 256 (372)
T ss_pred HHHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhc
Confidence 999888 344 3 4443 56744 356777665322456789998 8999999874 3567777776653 344
Q ss_pred C-----CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 166 G-----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 166 G-----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
| +.+..-+|-|.+++.+++.++.++++.++ ..|.+.+|.|+++.++ ++++.+++.++...++.
T Consensus 257 ~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~---~~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 257 NANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLME 324 (372)
T ss_pred ccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 3 34666677788999999999999999985 3889999999887665 45667776666555554
|
|
| >PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-11 Score=105.47 Aligned_cols=197 Identities=15% Similarity=0.226 Sum_probs=137.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhhc-
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~~- 105 (320)
+..+|+.+|.||..... +. .+.++.+||++.+..+.+. .++.|+|.|- ||| ..++.+++.++.+.+.
T Consensus 102 sQvGC~~~C~FC~tg~~---g~--~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGm-----GEPl~N~d~vl~ai~~l~~~~ 171 (344)
T PRK14464 102 TQVGCAVGCVFCMTGRS---GL--LRQLGSAEIVAQVVLARRRRAVKKVVFMGM-----GEPAHNLDNVLEAIDLLGTEG 171 (344)
T ss_pred ccCCcCCCCCcCcCCCC---CC--CCCCCHHHHHHHHHHHHhcCCCCEEEEecc-----CcccCCHHHHHHHHHHhhchh
Confidence 78999999999976532 22 2347999999999877664 5889988763 455 3568888888887632
Q ss_pred --Cce-EE-EeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCeee--eeE
Q 020848 106 --GME-VC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGINVC--SGG 173 (320)
Q Consensus 106 --~~~-i~-~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~-~~Gi~v~--~~~ 173 (320)
+.. +. .+.|. .+.+++|.+.++ ..+.+|+++. ++.++.+.+. .+.++.+++++... ..|.++. ..+
T Consensus 172 ~i~~r~itiST~G~--~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvL 249 (344)
T PRK14464 172 GIGHKNLVFSTVGD--PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTL 249 (344)
T ss_pred cCCCceEEEecccC--chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEE
Confidence 222 32 33453 345677776544 3566799999 8999998874 37888888888754 4565544 334
Q ss_pred EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 174 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 174 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
+=|.+++.+++.++.++++.+. -+|.+.+|.|++|..+. .++.+++.++.+..+..--...+|-
T Consensus 250 l~GVNDs~e~a~~L~~~l~~~~---~~vNLIPyN~v~g~~~~---rp~~~~i~~f~~~L~~~gi~~tiR~ 313 (344)
T PRK14464 250 LEGVNDSDEEMDGIVRLLKGKY---AVMNLIPYNSVDGDAYR---RPSGERIVAMARYLHRRGVLTKVRN 313 (344)
T ss_pred eCCCCCCHHHHHHHHHHHhccc---cccceecCCccCCCCcc---CCCHHHHHHHHHHHHHCCceEEEEC
Confidence 4466899999999999999874 47889999999988654 4556766666665654332333443
|
|
| >PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-10 Score=102.67 Aligned_cols=197 Identities=13% Similarity=0.164 Sum_probs=138.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~ 104 (320)
...||+++|.||.-... +.. +.++..||++.+..+.. ..+..|+|-| .|||+ .++.+.+.++.+++
T Consensus 111 sQvGC~m~C~FC~tg~~---g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL~N~d~V~~~~~~l~~ 180 (342)
T PRK14465 111 SQIGCTLNCKFCATAKL---EFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPMHNYFNVIRAASILHD 180 (342)
T ss_pred ecCCCCCCCCCCcCCCC---Ccc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcchhhHHHHHHHHHHHhC
Confidence 67899999999976531 222 34789999988876654 3467777765 25674 56899999998874
Q ss_pred c---Cc---eE-EEeCCCCCHHHHHHHHHhc-cCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHH-HcCCeee-
Q 020848 105 M---GM---EV-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVR-EAGINVC- 170 (320)
Q Consensus 105 ~---~~---~i-~~~~g~l~~e~l~~L~~aG-ld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~-~~Gi~v~- 170 (320)
. ++ .+ ..|+|.+ ..+.+|.+.. --.+.+|+++. ++.+.++.+ ..++++.+++++... +.|-++.
T Consensus 181 ~~~~~~~~r~itvST~G~~--~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~i 258 (342)
T PRK14465 181 PDAFNLGAKRITISTSGVV--NGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITF 258 (342)
T ss_pred hhhhcCCCCeEEEeCCCch--HHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 2 22 34 3567866 4556665432 24788999999 899999875 457899999999654 5666655
Q ss_pred -eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 171 -SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 171 -~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
.-++-|.+++.+++.++.++++.++ ..+.+.+|.|. + .+.++++.+++.+.....+...-...+|-+
T Consensus 259 eyvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~~-~---~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~ 326 (342)
T PRK14465 259 EYVMIPGVNMGRENANKLVKIARSLD---CKINVIPLNTE-F---FGWRRPTDDEVAEFIMLLEPAGVPILNRRS 326 (342)
T ss_pred EEEEECCccCCHHHHHHHHHHHhhCC---CcEEEEccCCC-C---CCCCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 4445566899999999999999986 35778888773 3 355678888877766666544333444444
|
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-10 Score=101.11 Aligned_cols=132 Identities=14% Similarity=0.225 Sum_probs=96.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG 106 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~ 106 (320)
+-+.+||++|.||......... ......++.+++++.+..+...+++.|.|+| |||+.++++.++++.+++.|
T Consensus 27 vR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTG------GEPll~~~l~~li~~l~~~g 100 (238)
T TIGR03365 27 VRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG------GNPALQKPLGELIDLGKAKG 100 (238)
T ss_pred EEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeC------CchhhhHhHHHHHHHHHHCC
Confidence 4688999999999765322111 1123348999999999877666788898876 57888889999999999888
Q ss_pred ceE-EEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE
Q 020848 107 MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 176 (320)
Q Consensus 107 ~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G 176 (320)
+.+ ..|||.+..+. |++ +|.+.++++.... .....|+...++++.+.+ +..+.+.++++
T Consensus 101 ~~v~leTNGtl~~~~---l~~--~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 101 YRFALETQGSVWQDW---FRD--LDDLTLSPKPPSS-----GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred CCEEEECCCCCcHHH---Hhh--CCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 885 56889876652 333 5688888876511 112358888888888887 66788888886
|
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=105.12 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=114.9
Q ss_pred cccCCCCCCCCCCCCCCCCC-CCC---CCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHh
Q 020848 28 IKTGGCSEDCSYCPQSSRYD-TGV---KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 102 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~-~~~---~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~ 102 (320)
..|+.||.+|.||+.+.... .+. ...+..+.++|.+++....+.|+ -++ +|+| .-++...+.++.+
T Consensus 33 FvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siT------GGdPl~~ieR~~~~ir~L 103 (353)
T COG2108 33 FVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SIT------GGDPLLEIERTVEYIRLL 103 (353)
T ss_pred EEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccc---ccc------CCChHHHHHHHHHHHHHH
Confidence 37999999999998875321 111 12344678888888876555444 333 4567 4568899999999
Q ss_pred hh-cC--ceE--EEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 103 RD-MG--MEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 103 k~-~~--~~i--~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
|+ .| +.+ .+|.-..+++.++.|.+||+|.|.+... . -.....+.+++.++.|++.|+.+++-+.. .
T Consensus 104 K~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~-~-------~~~~~~e~~i~~l~~A~~~g~dvG~EiPa-i 174 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP-R-------PGSKSSEKYIENLKIAKKYGMDVGVEIPA-I 174 (353)
T ss_pred HHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC-C-------ccccccHHHHHHHHHHHHhCccceeecCC-C
Confidence 84 33 333 3444458999999999999999988653 1 01235678899999999999998887655 4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
..-++.+.+.++++.+.+ .+.+.++.+--.
T Consensus 175 pg~e~~i~e~~~~~~~~~--~~FlNiNELE~s 204 (353)
T COG2108 175 PGEEEAILEFAKALDENG--LDFLNINELEFS 204 (353)
T ss_pred cchHHHHHHHHHHHHhcc--cceeeeeeeeec
Confidence 334567889999999987 678888776543
|
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-11 Score=103.17 Aligned_cols=194 Identities=14% Similarity=0.180 Sum_probs=136.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcC
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~ 106 (320)
.||.|-++|.||-..... +.++.. +++|||+..--.... .-+..+++.+|.--. + +..++.+++.++.++ +.+
T Consensus 60 lTN~CiyDC~YCINr~s~--~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~-DyTmE~mi~var~LRle~~ 134 (404)
T COG4277 60 LTNFCIYDCAYCINRSSN--DTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIKN-P-DYTMEEMIEVARILRLEHK 134 (404)
T ss_pred HhhhHHHhhHHHhccccC--CCcccc-cCHHHHHHHHHHHHHHhhhhhheeccccccC-c-chHHHHHHHHHHHHhhccc
Confidence 699999999999775432 445555 899999988765544 557888887764221 2 356788888888887 444
Q ss_pred ce----EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc-------C--------
Q 020848 107 ME----VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA-------G-------- 166 (320)
Q Consensus 107 ~~----i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~-------G-------- 166 (320)
+. .-+-+| .+.+.++++-.. +|++++.+|.. ++-++.+.+.+++.++++.+.+.+.. +
T Consensus 135 f~GYIHlK~IPg-as~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~ 212 (404)
T COG4277 135 FRGYIHLKIIPG-ASPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPE 212 (404)
T ss_pred cCcEEEEEecCC-CCHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcc
Confidence 43 222233 445555544333 69999999999 89999999999888888888776641 0
Q ss_pred C-e--eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 020848 167 I-N--VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 167 i-~--v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a 230 (320)
+ + -.+.+|+|- +++++++......+..-. ....|.+..|.|++++|+.....++.-...++++
T Consensus 213 fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQ 279 (404)
T COG4277 213 FAPAGQSTQMIVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQ 279 (404)
T ss_pred ccCCCCceEEEEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHH
Confidence 1 1 246799999 999999999888876543 2789999999999999876543333333344444
|
|
| >PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-09 Score=98.89 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=139.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-----------------CCCEEEEecccCCCCCCc-h
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----------------GSTRFCMGAAWRDTIGRK-T 90 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-----------------g~~~i~l~~g~~~~~ge~-~ 90 (320)
..-||++.|.||+-... +. .+.++..||++.+..+.+. .++.|+|-| .||| .
T Consensus 113 SQvGC~mgC~FCaTG~~---G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGEPL~ 182 (371)
T PRK14461 113 TQAGCGMGCVFCATGTL---GL--LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGEPFA 182 (371)
T ss_pred ccCCccCCCCcccCCCC---Cc--ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCCchh
Confidence 67899999999976532 22 2448999999998765431 256777754 2677 4
Q ss_pred hHHHHHHHHHHhhh-c--Cc---eEE-EeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHH
Q 020848 91 NFNQILEYVKDIRD-M--GM---EVC-CTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLET 158 (320)
Q Consensus 91 ~~~~l~~~i~~~k~-~--~~---~i~-~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~ 158 (320)
.++.+++.++.+.+ . ++ .+. .|.|. ...+++|.+.++. .+.+|+.+. +++++++.+ ..+.++.+++
T Consensus 183 NydnV~~ai~il~d~~g~~is~R~ITVST~Gi--vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a 260 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNLGARSMTVSTVGL--VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAA 260 (371)
T ss_pred hHHHHHHHHHHhcCccccCcCCCceEEEeecc--hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHH
Confidence 67899999999873 2 33 233 34564 4567777776543 577899999 899999888 3488999999
Q ss_pred HHHHHH-cCCee--eeeEEEEeCCCHHHHHHHHHHHhcCCCC---CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 020848 159 LKHVRE-AGINV--CSGGIIGLGEAEEDRVGLLHTLATLPTH---PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 159 i~~a~~-~Gi~v--~~~~i~Glget~ed~~~~l~~l~~l~~~---~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
++...+ .|-++ ...++=|.+++.+|..++.++++.++.. .-+|.+.+|.|++|+++. +++.+++.+.....
T Consensus 261 ~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~---~ps~~~i~~F~~~L 337 (371)
T PRK14461 261 TRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG---RSERERVTTFQRIL 337 (371)
T ss_pred HHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC---CCCHHHHHHHHHHH
Confidence 988554 45444 4555667789999999999999987210 247999999999998765 35677766666655
Q ss_pred HHhCCCceeecC
Q 020848 233 RIVMPKAMVRLS 244 (320)
Q Consensus 233 R~~~p~~~i~~~ 244 (320)
+..--...+|.+
T Consensus 338 ~~~gi~vtiR~s 349 (371)
T PRK14461 338 TDYGIPCTVRVE 349 (371)
T ss_pred HHCCceEEEeCC
Confidence 543323344433
|
|
| >KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=101.98 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=132.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhH-HHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNF-NQILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~-~~l~~~i~~ 101 (320)
++. ...+|-..|.||--.. .. + .....+.+++++.++...+.|+..|.+.+-.++.+|.. ..+ .-+.++++.
T Consensus 190 Ii~-intgclgaCtyckTkh-ar-g--~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~ 264 (547)
T KOG4355|consen 190 IIS-INTGCLGACTYCKTKH-AR-G--LLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEV 264 (547)
T ss_pred EEE-eccccccccccccccc-cc-c--ccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHh
Confidence 455 4779999999996532 11 2 12336899999999999999999999987655555532 112 223333333
Q ss_pred hhh-cCceEEEeCCCCCHHHHHHHHHh----cc-CeeccCcccc-HHHHhhhCCCC---CHHHHHHHHHHHHHcCCeeee
Q 020848 102 IRD-MGMEVCCTLGMLEKHQAIELKKA----GL-TAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 102 ~k~-~~~~i~~~~g~l~~e~l~~L~~a----Gl-d~v~i~let~-~~~~~~i~~~~---~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
+-+ ..+.+-+||-..--+.+++.+.. .+ ..+++.+++. +.++-.|.+.. +++.+.+.+.. +--|+.+.+
T Consensus 265 iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~Lte-rVPgi~IAT 343 (547)
T KOG4355|consen 265 IPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTE-RVPGITIAT 343 (547)
T ss_pred cchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHh-hCCCcEEee
Confidence 332 12333344443323333333222 11 2334578888 88988888754 45555544443 224889999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 229 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~ 229 (320)
++|.|+ +||++|+.++++++++.. ..++.++.|.|.||||.+.....+..+..+..
T Consensus 344 DiIcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkRT 400 (547)
T KOG4355|consen 344 DIICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKRT 400 (547)
T ss_pred eeeecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHHH
Confidence 999999 999999999999999997 77899999999999998887777666655443
|
|
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=90.06 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=115.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH-HcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG 106 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~-~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~ 106 (320)
.-+-+||+.|.||..+...........+++++|+.+.+.++. ++|.+.+-++|+. +.. ..+.+++.|+-+-+..
T Consensus 46 AD~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~E-P~l----~~EHvlevIeLl~~~t 120 (228)
T COG5014 46 ADTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAE-PIL----GREHVLEVIELLVNNT 120 (228)
T ss_pred ccccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCC-ccc----cHHHHHHHHHhccCce
Confidence 367899999999965432222334567799999999887664 4799999887753 222 3477888887764433
Q ss_pred ceEEEeCCC---CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC
Q 020848 107 MEVCCTLGM---LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEA 180 (320)
Q Consensus 107 ~~i~~~~g~---l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget 180 (320)
+ +.-|||. .+...+++|.+.---.|.+++.+. ++.|.+|... .-|...+++++.+++.|+.+...+++++- +
T Consensus 121 F-vlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f~-~ 198 (228)
T COG5014 121 F-VLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDFF-R 198 (228)
T ss_pred E-EEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhccc-h
Confidence 3 4556776 378888888764333567899999 9999998752 24677899999999999998888888772 1
Q ss_pred HHHHHHHHHHHhcCCCCCCee
Q 020848 181 EEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v 201 (320)
++...++...+.+.++-+..+
T Consensus 199 Ed~~k~Lak~Lgehp~~P~~i 219 (228)
T COG5014 199 EDGLKELAKRLGEHPPIPCRI 219 (228)
T ss_pred hhhHHHHHHHhccCCCCCcce
Confidence 222344666666665333333
|
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=98.32 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=131.4
Q ss_pred EeecccCCCCCC----CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEec-------ccCCCCCC-c-hh
Q 020848 25 LLSIKTGGCSED----CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGA-------AWRDTIGR-K-TN 91 (320)
Q Consensus 25 ~l~~~t~~C~~~----C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~-------g~~~~~ge-~-~~ 91 (320)
=|. +..+|+.. |+||.-... + .....++|.++++++.+...|+++|-|+= +....+++ | ..
T Consensus 186 EiE-TyRGC~r~~~ggCSFCtEp~~---g--~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~Pn 259 (560)
T COG1031 186 EIE-TYRGCPRRVSGGCSFCTEPVR---G--RPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPN 259 (560)
T ss_pred EEe-eccCCcccccCCCccccCcCc---C--CcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCC
Confidence 344 89999987 999976532 2 23447999999999999999999877641 11112221 1 23
Q ss_pred HHHHHHHHHHhhhc--CceE-E---EeCCCC------CHHHHHHHHHhcc--CeeccCcccc-HHHHhhhCCCCCHHHHH
Q 020848 92 FNQILEYVKDIRDM--GMEV-C---CTLGML------EKHQAIELKKAGL--TAYNHNLDTS-REFYSKIITTRSYDERL 156 (320)
Q Consensus 92 ~~~l~~~i~~~k~~--~~~i-~---~~~g~l------~~e~l~~L~~aGl--d~v~i~let~-~~~~~~i~~~~~~~~~l 156 (320)
-+.+.++.+-+++. ++.+ . +|++.+ +.+.++.+.+.|- |...+++||+ +.+.+.-+-..+.++++
T Consensus 260 PealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl 339 (560)
T COG1031 260 PEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVL 339 (560)
T ss_pred HHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHH
Confidence 45566666666643 4442 2 233332 4556677777774 6788999999 88877766678999999
Q ss_pred HHHHHHHHcC-------Ce---eeeeEEEEe-CCCHHHHHHHHHHHhcC---CCCCCeeeeeeeeecCCCCCCCC
Q 020848 157 ETLKHVREAG-------IN---VCSGGIIGL-GEAEEDRVGLLHTLATL---PTHPESVPINALLAVKGTPLQDQ 217 (320)
Q Consensus 157 ~~i~~a~~~G-------i~---v~~~~i~Gl-get~ed~~~~l~~l~~l---~~~~~~v~~~~~~p~~gt~~~~~ 217 (320)
++++...+.| ++ -++++++|+ ||+.+.+.-..++|+++ |--+..|.+-...++|||++...
T Consensus 340 ~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 340 EAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred HHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 9999988854 33 578999999 99999887776666654 22256788889999999998753
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-07 Score=83.57 Aligned_cols=222 Identities=14% Similarity=0.170 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceE--EEeCCCCCHHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV--CCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i--~~~~g~l~~e~l~~L~~aGl 129 (320)
..++.++.++.++.+.+.|++.|-++++..+... | .+++..+.++.+++.+ ..+ .++++ .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-P-QMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-c-cCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 3479999999999999999999999876543221 2 3456777777777543 443 34454 888999999999
Q ss_pred CeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC--CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 130 TAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 130 d~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
+.+.+++.+.+ ....+.+++ ..++..++.++.+++.|+.+.+.+..-.+ .+.+++.+.++.+.++| ++.+.+.
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~i~l~ 166 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG--ADEISLK 166 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--CCEEEec
Confidence 99999987773 222223333 36889999999999999999888876567 99999999999999998 6665532
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCCh
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDF 280 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~ 280 (320)
.| ....+++++.+++...+...++..+.+-. ...++.......++.+||..+- .|-+ ..++..+.
T Consensus 167 ------Dt----~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~Gn~~~ 235 (265)
T cd03174 167 ------DT----VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERAGNAAT 235 (265)
T ss_pred ------hh----cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccccCccH
Confidence 22 12367888889999888888763222211 0012222334678889998772 2211 23456789
Q ss_pred hHHHHHHHHcCCC
Q 020848 281 DADQLMFKVLGLT 293 (320)
Q Consensus 281 ~~~~~~i~~~G~~ 293 (320)
++++.+++..|+.
T Consensus 236 e~~~~~l~~~~~~ 248 (265)
T cd03174 236 EDLVAALEGLGID 248 (265)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999853
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-08 Score=88.13 Aligned_cols=186 Identities=18% Similarity=0.320 Sum_probs=127.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cC------CCEEEEecccCCCCCCc-hhHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG------STRFCMGAAWRDTIGRK-TNFNQILEYVK 100 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g------~~~i~l~~g~~~~~ge~-~~~~~l~~~i~ 100 (320)
+.-||+..|.||+-... +. .+.++..||+..+..+.+ .| +..|++-| .||| ..++.+..+++
T Consensus 107 sQvGC~~~C~FCaTg~~---G~--~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl~N~dnV~~a~~ 176 (349)
T COG0820 107 SQVGCPVGCTFCATGQG---GL--NRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPLLNLDNVVKALE 176 (349)
T ss_pred cCCCcCCCCCeeccccc---cc--eeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchhhhHHHHHHHHH
Confidence 67799999999987542 22 234899999999987653 23 34465543 3667 56788999999
Q ss_pred Hhh-hcCce-----EE-EeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCC
Q 020848 101 DIR-DMGME-----VC-CTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGI 167 (320)
Q Consensus 101 ~~k-~~~~~-----i~-~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi 167 (320)
.+. ..|+. +. .|.|. ...+.+|.+..++ .+.+|+.+. +++.+.+.+. .+.+..+++++.-.+ .|.
T Consensus 177 i~~~~~G~~ls~R~iTvSTsGi--~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~ 254 (349)
T COG0820 177 IINDDEGLGLSKRRITVSTSGI--VPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR 254 (349)
T ss_pred hhcCcccccccceEEEEecCCC--chhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc
Confidence 887 33332 33 34553 3456666643332 567899999 8888887773 477888888888554 454
Q ss_pred eee--eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 020848 168 NVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 168 ~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
+|. ..++=|.+++.++..++++++..+. -+|.+.+|.|++|+.+.. ++.+++.+.....
T Consensus 255 rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~---~~VNLIP~Np~~~~~y~r---~~~~~i~~F~~~L 315 (349)
T COG0820 255 RVTFEYVLLDGVNDSLEHAKELAKLLKGIP---CKVNLIPYNPVPGSDYER---SSKERIRKFLKIL 315 (349)
T ss_pred eEEEEeeecccccCCHHHHHHHHHHhcCCC---ceEEEeecCCCCCCCccC---CcHHHHHHHHHHH
Confidence 444 4455566788999999999998884 489999999999988543 4455544444433
|
|
| >PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=86.78 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=65.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh---HHHHHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~---~~~l~~~i~~~k~~ 105 (320)
.+++||++|.||..+... .......++.+.+.+.++.+.+.++..|.++| |||+. .+.+.++++.+++.
T Consensus 11 ~t~~Cnl~C~yC~~~~~~--~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~G------GEPll~~~~~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 11 FTNGCNLRCKYCFNSEIW--KFKRGKELSEEIIEEIIEELKNYGIKGIVLTG------GEPLLHENYDELLEILKYIKEK 82 (139)
T ss_dssp EEC--SB--TT-TTCCCS---TT-SEEC-HHHHHHHCHHHCCCCCCEEEEEC------STGGGHHSHHHHHHHHHHHHHT
T ss_pred EcCcccccCcCcCCcccC--cccccccccchhhhhhhhHHhcCCceEEEEcC------CCeeeeccHhHHHHHHHHHHHh
Confidence 377899999999765422 11233336777777777777778899998886 46777 89999999999976
Q ss_pred Cc-e-EEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 106 GM-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 106 ~~-~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
+. . +..++|....+...++....++.+.++++..
T Consensus 83 ~~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~ 118 (139)
T PF13353_consen 83 FPKKIIILTNGYTLDELLDELIEELLDEIDVSVDGP 118 (139)
T ss_dssp T-SEEEEEETT--HHHHHHHHHHHHHHTESEEEE--
T ss_pred CCCCeEEEECCCchhHHHhHHHHhccCccEEEEEEe
Confidence 55 3 6788898777776655555566666666665
|
|
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.8e-08 Score=85.34 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=107.6
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHH-HHHHHHHH-HHcCC--CEEEEecccCCCCCCc--hhHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDA-VMQAAQKA-KEAGS--TRFCMGAAWRDTIGRK--TNFNQI 95 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~ee-i~~~~~~~-~~~g~--~~i~l~~g~~~~~ge~--~~~~~l 95 (320)
...+| .-.||.+.|.||........ ...... +..++ +++.++.- .+.+- ..|.+++.+ +++. | ..+.-.
T Consensus 30 ~y~in-py~GC~h~C~YCYa~~~~~~~~~~~~~-v~vk~n~~e~l~~el~~~~~k~~~i~is~~T-Dpyq-p~E~~~~lt 105 (297)
T COG1533 30 DYTLN-PYRGCSHGCIYCYARPMHGYLPKSPTK-VNVKENLLELLERELRKPGPKRTVIAISSVT-DPYQ-PIEKEYRLT 105 (297)
T ss_pred ceecC-CcCCCCCCCceeecccccccccCCCce-eeechhHHHHHHHHHhhccCCceEEEEecCC-CCCC-cchHHHHHH
Confidence 34556 56799999999966532111 111122 34444 77777543 32333 345555443 3332 2 122222
Q ss_pred HHHHHHhhhcCceEEEeCC-CC---CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCee
Q 020848 96 LEYVKDIRDMGMEVCCTLG-ML---EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINV 169 (320)
Q Consensus 96 ~~~i~~~k~~~~~i~~~~g-~l---~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v 169 (320)
..+++.+.+.+.++.+.+. .+ +-+.+..++.-+.-.|.+++-|. +++.+.+-+. .+.++++++++.+.++|+++
T Consensus 106 R~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~ 185 (297)
T COG1533 106 RKILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPV 185 (297)
T ss_pred HHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeE
Confidence 2233333355666543332 33 55666666666767788999888 6677777765 48999999999999999997
Q ss_pred eeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 170 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 170 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+---+ +.+++|+.+.+..+.+-+ +..+..
T Consensus 186 ~v~v~PIiP~~~d~e~e~~l~~~~~ag--~~~v~~ 218 (297)
T COG1533 186 GLFVAPIIPGLNDEELERILEAAAEAG--ARVVVY 218 (297)
T ss_pred EEEEecccCCCChHHHHHHHHHHHHcC--CCeeEe
Confidence 76663323 778899999999999887 444433
|
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-08 Score=88.24 Aligned_cols=198 Identities=16% Similarity=0.145 Sum_probs=141.2
Q ss_pred cCCCCCC---CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCC---EEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 30 TGGCSED---CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST---RFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 30 t~~C~~~---C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~---~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
...|... |.||...... ... ...++..+.+....-.-.+.. .+...+ .+.+.-++++.+.+++++
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~---~~~-~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~-----~~d~~c~p~le~~~~r~~ 104 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNE---LDT-GFIPPLMVEKEPDEDLGLEFEEVLGAKQCG-----NGDTFCYPDLEPRGRRAR 104 (414)
T ss_pred CCcCCCccccccceeeEEec---ccC-CCCCHhHhhcccccccccccccccceeecC-----CCCcccCcchhhhhhHHH
Confidence 3445555 8888765321 111 446777777776521111221 222222 234567788888888887
Q ss_pred hcC----ceEEEe--CCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE
Q 020848 104 DMG----MEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 176 (320)
Q Consensus 104 ~~~----~~i~~~--~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G 176 (320)
..+ +.+..+ +|..+.+..+.|.++|+|-+++++.|. +++++++.+.+..++.++.+++..+.++.+.+.+++-
T Consensus 105 ~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl~ 184 (414)
T COG1625 105 LYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVLC 184 (414)
T ss_pred hhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEEc
Confidence 543 454433 455677788889999999999999999 9999999999999999999999999999999888886
Q ss_pred eCCC-HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCC
Q 020848 177 LGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 177 lget-~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~--~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
.|-| -+++.++++.|.++| +..+.++.+.|++-|.+.. .+++.++++.++..+.|.+...
T Consensus 185 PGvNdge~L~kT~~dL~~~g--~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E 247 (414)
T COG1625 185 PGVNDGEELEKTLEDLEEWG--AHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRE 247 (414)
T ss_pred CCcCcHHHHHHHHHHHHHhC--cCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6777 789999999999998 6667777778888666543 2456777777777777666443
|
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-07 Score=78.67 Aligned_cols=194 Identities=12% Similarity=0.098 Sum_probs=125.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-
Q 020848 30 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME- 108 (320)
Q Consensus 30 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~- 108 (320)
=.+||++|.||+.+.-+. .......++|++.+.+......|++.+-++||++. ...+.|++.++.+... ++
T Consensus 125 FsgCnfrCVfCQNwdISq--~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-----p~lp~Ile~l~~~~~~-iPv 196 (335)
T COG1313 125 FSGCNFRCVFCQNWDISQ--FGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-----PHLPFILEALRYASEN-IPV 196 (335)
T ss_pred ecCcceEEEEecCccccc--cCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC-----CchHHHHHHHHHHhcC-CCE
Confidence 368999999997764321 12344489999999999999999999999886422 2568899988887753 66
Q ss_pred EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHcC--CeeeeeEEEEeCCCHHH-
Q 020848 109 VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAG--INVCSGGIIGLGEAEED- 183 (320)
Q Consensus 109 i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed- 183 (320)
+.-+|+.+++|.++.|... +|.+.-++.-. ++--.+..+.. =|+-+.+++..+.+.+ +-+.--++. | ..++
T Consensus 197 vwNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlP--g-hlecC 272 (335)
T COG1313 197 VWNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLP--G-HLECC 272 (335)
T ss_pred EEecCCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecC--C-chhhc
Confidence 5677888999999998765 66666667666 55444444434 4577788888887764 323322233 3 2333
Q ss_pred HHHHHHHHhcCCCCCCeeee-eeeeecC-CCCCCC-CCCCCHHHHHHHHHHHHHh
Q 020848 184 RVGLLHTLATLPTHPESVPI-NALLAVK-GTPLQD-QKPVEIWEMIRMIATARIV 235 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~-~~~~p~~-gt~~~~-~~~~~~~e~~~~~a~~R~~ 235 (320)
-..+++|+.+.-..-..+.+ +.|.|.- ...+.+ ...++.+|+.+.+..++.+
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHc
Confidence 56778888776311112333 3565632 111111 1357888888888777754
|
|
| >KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-07 Score=82.77 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=129.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----------------
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---------------- 88 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge---------------- 88 (320)
+++ .-.||++-|+||..+-. .+.+ +..+.+-|+++++.+.+.|++++.+.|-.-..+.+
T Consensus 223 FvS-iMRGCdNMCtyCiVpft--rGre--Rsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 223 FVS-IMRGCDNMCTYCIVPFT--RGRE--RSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred HHH-HHhccccccceEEEecc--CCcc--cCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 444 46899999999965421 2322 33689999999999999999999886432111100
Q ss_pred -----------chhHHHHHHHHHHhhhcCceEE-Ee--CCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCC
Q 020848 89 -----------KTNFNQILEYVKDIRDMGMEVC-CT--LGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRS 151 (320)
Q Consensus 89 -----------~~~~~~l~~~i~~~k~~~~~i~-~~--~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~ 151 (320)
.+.+..+++-+.... -.+.+- ++ +....++.++.+++.- ...+.+..++. .++++.++++.+
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~-PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgys 376 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRAD-PEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYS 376 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhC-cceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCC
Confidence 123344444444333 123332 33 3447788888887763 23456678888 789999999999
Q ss_pred HHHHHHHHHHHHHc--CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 152 YDERLETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 152 ~~~~l~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
.+.+++-....+.. |+...++++.|. |||.+|-..++-++++.| .+.+..+.|+=..+|..
T Consensus 377 reayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~a 440 (552)
T KOG2492|consen 377 REAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRA 440 (552)
T ss_pred hHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhc--cCeeeeEEeeecccchh
Confidence 99998888888874 777889999999 999999999999999998 67777777776667643
|
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-06 Score=73.73 Aligned_cols=204 Identities=13% Similarity=0.200 Sum_probs=129.8
Q ss_pred ccCCCCC----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-C--CC--EEEE-ecccCCCCCCchhHHHHHHH
Q 020848 29 KTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G--ST--RFCM-GAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 29 ~t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g--~~--~i~l-~~g~~~~~ge~~~~~~l~~~ 98 (320)
.|.||.. .|.+|++..... ....+.|++.+....+... . .. .+.+ ++|.... .+....+....+
T Consensus 53 rT~GC~w~~~~gC~MCgY~~d~~-----~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~I 126 (358)
T COG1244 53 RTRGCRWYREGGCYMCGYPADSA-----GEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYI 126 (358)
T ss_pred ecCCcceeccCCcceeccccccC-----CCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHH
Confidence 6999985 389998764211 2227889999888766542 2 22 3555 4433221 112333445555
Q ss_pred HHHhhhcC-ce---EEEeCCCCCHHHHHHHHHh--cc-CeeccCcccc-HHHH-hhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 99 VKDIRDMG-ME---VCCTLGMLEKHQAIELKKA--GL-TAYNHNLDTS-REFY-SKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 99 i~~~k~~~-~~---i~~~~g~l~~e~l~~L~~a--Gl-d~v~i~let~-~~~~-~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
++.+.+.+ ++ +...+...++|.++++.+. |. -.|.++|||. +++. ..+.++.+|++.+++++.++++|+.+
T Consensus 127 l~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~v 206 (358)
T COG1244 127 LERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKV 206 (358)
T ss_pred HHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCce
Confidence 55665442 33 4455677999999999998 64 3588999999 7776 56888899999999999999999999
Q ss_pred eeeEEEEe-CCCHH-HHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 170 CSGGIIGL-GEAEE-DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 170 ~~~~i~Gl-get~e-d~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
.+.+++-+ =-++. .+.+.+.-+.......+.+++++-...+||-++. ..||=..-+..++.-++...|.
T Consensus 207 ktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 207 KTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred eEEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 99988755 12222 2333333333332237899999888888985432 2233334444444444555553
|
|
| >PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-08 Score=75.04 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=45.5
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--CEEEEecccCCCCCCchh---HHHHHHHHHHh
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTN---FNQILEYVKDI 102 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~--~~i~l~~g~~~~~ge~~~---~~~l~~~i~~~ 102 (320)
+.|.+||++|.||....... ......++.+++.+.++.+...+. ..|.|+| |||+. .+.+.++++.+
T Consensus 3 ~~t~~Cnl~C~~C~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G------GEPll~~~~~~l~~~i~~~ 74 (119)
T PF13394_consen 3 VRTSGCNLRCSYCYNKSSWS--PKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG------GEPLLYLNPEDLIELIEYL 74 (119)
T ss_dssp ---S--S---TTTS-TTTSS--T-GGGS--HHHHHHHHHHHHHTT----EEEEES------SSGGGSTTHHHHHHHHCTS
T ss_pred CccCCcCCCCccCCcCccCC--CccCCcccHhHHHHHHHHHHhcCCceEEEEEEC------CCCccccCHHHHHHHHHHH
Confidence 36899999999998653221 123444789999999987777766 4577776 46763 37799999999
Q ss_pred hhcC--ceE-EEeCCCCC
Q 020848 103 RDMG--MEV-CCTLGMLE 117 (320)
Q Consensus 103 k~~~--~~i-~~~~g~l~ 117 (320)
++.+ ..+ ..|||.+.
T Consensus 75 ~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 75 KERGPEIKIRIETNGTLP 92 (119)
T ss_dssp TT-----EEEEEE-STTH
T ss_pred HhhCCCceEEEEeCCeec
Confidence 8766 554 46778765
|
|
| >TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=72.19 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=64.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 108 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~ 108 (320)
...+||++|.||..+.... ......++.+++++.++... ..+..|.|+| || ...+.+.++++.+|+.|+.
T Consensus 21 fl~GCnlrC~~C~n~~~~~--~~~g~~lt~eel~~~I~~~~-~~~~gVt~SG------GE-l~~~~l~~ll~~lk~~Gl~ 90 (147)
T TIGR02826 21 YITGCPLGCKGCHSPESWH--LSEGTKLTPEYLTKTLDKYR-SLISCVLFLG------GE-WNREALLSLLKIFKEKGLK 90 (147)
T ss_pred EeCCCCCCCCCCCChHHcC--CCCCcCCCHHHHHHHHHHhC-CCCCEEEEec------hh-cCHHHHHHHHHHHHHCCCC
Confidence 4669999999997764321 11123489999999987754 2356787876 45 5778899999999988888
Q ss_pred EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 109 VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 109 i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+..|...++..+++.+. +|.+..+
T Consensus 91 i~l~Tg~~~~~~~~~il~~-iD~l~~g 116 (147)
T TIGR02826 91 TCLYTGLEPKDIPLELVQH-LDYLKTG 116 (147)
T ss_pred EEEECCCCCHHHHHHHHHh-CCEEEEC
Confidence 6443344444455555443 5655544
|
Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. |
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-06 Score=76.04 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=121.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 105 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~- 105 (320)
+.|++|...|.||.-...... .... ++.+++.+.++.+++.. +..|.|+||+.... .+ +.|..++++++++
T Consensus 116 l~t~~C~vyCRyCfRr~~~~~--~~~~-~~~~~~~~al~YIa~hPeI~eVllSGGDPL~l-s~---~~L~~ll~~L~~Ip 188 (369)
T COG1509 116 LVTGVCAVYCRYCFRRRFVGQ--DNQG-FNKEEWDKALDYIAAHPEIREVLLSGGDPLSL-SD---KKLEWLLKRLRAIP 188 (369)
T ss_pred EecCcccceeeeccccccccc--cccc-CCHHHHHHHHHHHHcCchhheEEecCCCcccc-CH---HHHHHHHHHHhcCC
Confidence 479999999999976543321 2222 68999999999888874 88999988754332 23 4455555555543
Q ss_pred Cce---EE-----EeCCCCCHHHHHHHHHhccCe-eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--eeEE
Q 020848 106 GME---VC-----CTLGMLEKHQAIELKKAGLTA-YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGI 174 (320)
Q Consensus 106 ~~~---i~-----~~~g~l~~e~l~~L~~aGld~-v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~i 174 (320)
+++ +. +.+.-++++..+.|.+.+... +...++...|+ -....++++.++++|+.+. +-++
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Ei---------t~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEI---------TPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhc---------CHHHHHHHHHHHHcCceeecchhee
Confidence 222 21 334446788888887754321 12222221111 1345788999999999854 3345
Q ss_pred EEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 175 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 175 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
-|.+++.+-+.+++..+.+.++. -..++..-+.+|+.- -..+.++.++++...|...+
T Consensus 260 rGVND~~evl~~L~~~L~~~gV~--PYYl~~~D~~~G~~h---fr~~i~~~~~i~~~lr~~~S 317 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAGVK--PYYLHQLDLVQGAAH---FRVPIAEGLQIVEELRGRTS 317 (369)
T ss_pred cccCCCHHHHHHHHHHHHHcCCc--ceEEeccCccCCccc---eeccHHHHHHHHHHHHHhCC
Confidence 56789999999999999999843 334444445556542 24678888888888776654
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00015 Score=63.72 Aligned_cols=218 Identities=14% Similarity=0.164 Sum_probs=143.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++..+.++.+.+.|++.+-++- +..+ + .=.+.++.+.+. +..+. .......+.++...++|++.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~-~----~~~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGI---PAMG-E----EEREAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec---CCCC-H----HHHHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCE
Confidence 348999999999999999999998752 2222 1 112344444432 33321 22335678899999999999
Q ss_pred eccCcccc-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~-~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+.+.+-.. ....+.++.. ...+...+.++.+++.|+.+..++......+++.+.+.++.+.+.| ++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l----- 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG--ADRLRF----- 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--CCEEEe-----
Confidence 99988666 3444555432 2456677888999999999888887766678899999999999998 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
++|- ....|+++.+++...+..+| ..+.+-. ...++.......++.+|++.+ +.|-+ ..++....++++
T Consensus 159 -~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G-~~aGN~~tE~lv 231 (259)
T cd07939 159 -ADTV----GILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG-ERAGNAALEEVV 231 (259)
T ss_pred -CCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-ccccCcCHHHHH
Confidence 2332 24567888888888877666 2221110 001122223456889999877 22221 235567899999
Q ss_pred HHHHHc-CCCc
Q 020848 285 LMFKVL-GLTP 294 (320)
Q Consensus 285 ~~i~~~-G~~p 294 (320)
.+++.. |+..
T Consensus 232 ~~l~~~~g~~~ 242 (259)
T cd07939 232 MALKHLYGRDT 242 (259)
T ss_pred HHHHHhcCCCC
Confidence 999987 8864
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0002 Score=64.97 Aligned_cols=215 Identities=15% Similarity=0.113 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccc-----CCCCCCc--hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAW-----RDTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~-----~~~~ge~--~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++.+.++.+.+.|++.|-++-|. ....|.+ ...+++.++.+.++...+.+...+|.-+.+.++...++|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 899999999999999999999885211 1111211 234455555554443333445566777788999999999
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
++.|.+...- ...+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 101 vd~iri~~~~-----------~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i----- 162 (333)
T TIGR03217 101 ARTVRVATHC-----------TEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYI----- 162 (333)
T ss_pred CCEEEEEecc-----------chHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEE-----
Confidence 9998876421 2234568899999999999888888777778999999999999998 554433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~~~~ 283 (320)
.+|- ....++++.+++...|..++ +..+-+-+ ...++.-.....++.+|++.+-. |-+ ..++..+.+..
T Consensus 163 -~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G-~~aGN~~~E~l 236 (333)
T TIGR03217 163 -VDSA----GAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLG-AGAGNAPLEVF 236 (333)
T ss_pred -ccCC----CCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccccc-ccccCccHHHH
Confidence 1221 24668888888888887765 32222110 00112122335678899998722 210 12445778888
Q ss_pred HHHHHHcCCCc
Q 020848 284 QLMFKVLGLTP 294 (320)
Q Consensus 284 ~~~i~~~G~~p 294 (320)
+.++...|+.+
T Consensus 237 v~~l~~~g~~t 247 (333)
T TIGR03217 237 VAVLDRLGWNT 247 (333)
T ss_pred HHHHHhcCCCC
Confidence 88888888764
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-06 Score=76.10 Aligned_cols=143 Identities=18% Similarity=0.146 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EE-EeCCC---CCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGM---LEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~-~~~g~---l~~e~l~~L~~aGl 129 (320)
-+.|+|.+.++.++.. .+....++ .++|||+..++|.++++.+++.|+. +. .|||. .+.+..+.|+++|+
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq----~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~ 166 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQ----FTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGV 166 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeE----ecCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCC
Confidence 7899999999988775 23333333 2347899999999999999998874 53 46775 46899999999999
Q ss_pred CeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 130 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 130 d~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
+.+.++.|+. ++.+.+. .-.+-++++.++++|+. +..--.+--|.|+.++-++++++... ++.++-..|.
T Consensus 167 ~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n---~dvVrgVnfQ 238 (475)
T COG1964 167 NTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNN---IDVVRGVNFQ 238 (475)
T ss_pred cEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhc---cccccccceE
Confidence 9999999999 7776554 33334488999999976 33222221278889999999998865 3444555555
Q ss_pred ecC
Q 020848 208 AVK 210 (320)
Q Consensus 208 p~~ 210 (320)
|+.
T Consensus 239 PVs 241 (475)
T COG1964 239 PVS 241 (475)
T ss_pred EEE
Confidence 554
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00029 Score=64.87 Aligned_cols=218 Identities=15% Similarity=0.183 Sum_probs=142.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++.++.++.+.+.|++.|-++. +..+ +.-.+.++.+.+.+. ++. .......+.++.+.++|++.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~v~-~~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF---PIAS-----EGEFEAIKKISQEGLNAEIC-SLARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----hHHHHHHHHHHhcCCCcEEE-EEcccCHHHHHHHHHcCcCE
Confidence 348999999999999999999998753 2212 222456666654433 332 22235688899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+-+.+ .....++.. ..++...+.++.+++.|+.+.+++.-....+++.+.+.++.+.+.| ++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l----- 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG--ADRINI----- 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 998877763 333344332 2467778899999999999887776655567888999999999998 555443
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
++|- ....|+++.+++...+..++ ..+.+-+ ...++.......++.+||..+ +.|-+ ..++..+.++++
T Consensus 161 -~DT~----G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG-eraGN~~lE~vv 233 (363)
T TIGR02090 161 -ADTV----GVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG-ERAGNAALEEVV 233 (363)
T ss_pred -eCCC----CccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc-cccccccHHHHH
Confidence 2332 24567777888877775554 2121110 001121223356788999877 23321 234567788888
Q ss_pred HHHHH-cCCCc
Q 020848 285 LMFKV-LGLTP 294 (320)
Q Consensus 285 ~~i~~-~G~~p 294 (320)
.+++. .|+.+
T Consensus 234 ~~L~~~~g~~~ 244 (363)
T TIGR02090 234 MALKYLYGVKT 244 (363)
T ss_pred HHHHHhhCCCC
Confidence 88887 78765
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00041 Score=60.89 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..+|.++.++.++.+.+.|++.|-+++ +. .-+...+.++.+.+.+ ..+ ........+.++...++|++.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~-----~~~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS---PA-----ASPQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC---CC-----CCHHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCE
Confidence 448999999999999999999998874 21 2233344444444322 223 222346788899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+-+.+ -....+++. ...+...+.++.+++.|+.+..++.-..+-+++.+.++++.+.+.| ++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l----- 160 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG--VNRVGI----- 160 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 998876663 233333222 2456677777999999999998887767777889999999999998 554432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec--CCcccccChhHHHHHHHcCCceEe---eCCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL--SAGRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~~~~ 283 (320)
++|- ...+|+++.+++...+..++ ..+.+ -. ..++.-.....++.+|++.+- .|- =...+..+.+++
T Consensus 161 -~Dt~----G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn-~~Gla~an~~~a~~aG~~~vd~s~~Gl-GeraGn~~~e~~ 232 (262)
T cd07948 161 -ADTV----GIATPRQVYELVRTLRGVVS-CDIEFHGHN-DTGCAIANAYAALEAGATHIDTTVLGI-GERNGITPLGGL 232 (262)
T ss_pred -CCcC----CCCCHHHHHHHHHHHHHhcC-CeEEEEECC-CCChHHHHHHHHHHhCCCEEEEecccc-ccccCCccHHHH
Confidence 2332 24567788888887777665 22211 11 012222233567889999762 221 013455678888
Q ss_pred HHHHHHcCC
Q 020848 284 QLMFKVLGL 292 (320)
Q Consensus 284 ~~~i~~~G~ 292 (320)
+..+...+.
T Consensus 233 ~~~l~~~~~ 241 (262)
T cd07948 233 IARMYTADP 241 (262)
T ss_pred HHHHHhccc
Confidence 888866543
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00034 Score=64.86 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=140.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce--EEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++.++.++.+.+.|++.|-++. +..+ +.-.+.++.+.+.+.. +.+ .+....+.++.+.++|++.
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~-----~~~~e~i~~i~~~~~~~~i~~-~~r~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAGF---PAVS-----EDEKEAIKAIAKLGLNASILA-LNRAVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEeC---CCcC-----hHHHHHHHHHHhcCCCeEEEE-EcccCHHHHHHHHhCCcCE
Confidence 348999999999999999999997752 2222 2224455555544433 322 2334578899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+.+.+.+.+ ....+++.. ..++...+.++.+++.|+.+.+++..+...+.+.+.+.++.+.+.| ++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~I~l----- 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG--ADRVRF----- 164 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 999887773 344444432 2456666788899999999888877655668889999999999998 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
++|- ....|.++.+++...+..++ ..+.+-+ ...++--.....++.+||..+ +.|-+ ..++....++++
T Consensus 165 -~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG-eraGNa~lE~vv 237 (378)
T PRK11858 165 -CDTV----GILDPFTMYELVKELVEAVD-IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLG-ERAGNAALEEVV 237 (378)
T ss_pred -eccC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecccc-ccccCccHHHHH
Confidence 2332 23567777888877765542 2221110 001111223356788999887 22321 234567788888
Q ss_pred HHHH-HcCCCc
Q 020848 285 LMFK-VLGLTP 294 (320)
Q Consensus 285 ~~i~-~~G~~p 294 (320)
.+++ ..|+..
T Consensus 238 ~~L~~~~g~~~ 248 (378)
T PRK11858 238 MALKYLYGIDL 248 (378)
T ss_pred HHHHHHhCCCC
Confidence 8887 477764
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-05 Score=65.96 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHH-HHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ-AIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~-l~~L~~aGld~v~i 134 (320)
++.++.++.++.+.+.|++.|-++. +..+ +...+.+.++.+.+.+..+.........+-+. ++.+++.|++.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF---PFAS-EDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH---CTSS-HHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc---cccC-HHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 8899999999999999999998872 1112 34555666555555542233334433323333 66677899999998
Q ss_pred CccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 135 NLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 135 ~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
.....+ -....++. ....+...+.++.+++.|+.+..++.....-+++++.+.++.+.++| ++.+.+- +
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~l~------D 158 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADIIYLA------D 158 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SEEEEE------E
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeEEEee------C
Confidence 876664 23333322 12356677788889999999977776655668899999999999998 6655432 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-cc-ccCCCCChhHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KL-LTTPNNDFDADQLMFK 288 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~-~~~~~~~~~~~~~~i~ 288 (320)
|- ...+|.++..++...+..+|+..+.+-. ...++--.....++.+||+.+-+.- ++ ..++..+.++++.+++
T Consensus 159 t~----G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 159 TV----GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALE 234 (237)
T ss_dssp TT----S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred cc----CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHh
Confidence 21 2456888899999999999874332211 0012222234678899999873210 01 1345578899999888
Q ss_pred HcC
Q 020848 289 VLG 291 (320)
Q Consensus 289 ~~G 291 (320)
.+|
T Consensus 235 ~~g 237 (237)
T PF00682_consen 235 RMG 237 (237)
T ss_dssp HT-
T ss_pred hcC
Confidence 876
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00071 Score=60.22 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=141.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+.++.++.+.+.|++.|-+++...+.. -|.. .+-.+.++.+.+. +..+..-. ...+.+++..++|++.+
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~-~p~~-~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKW-VPQM-ADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEV 96 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccc-cccc-ccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEE
Confidence 448999999999999999999998864322211 1211 1224555555432 33332211 36788899999999999
Q ss_pred ccCccccHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~~-~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+.+.+. ..+++++. ..++...+.++.+++.|+.+..++.+-++ -+++.+.+.++.+.+.| ++.|.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l 174 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG--CYEISL 174 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC--CcEEEe
Confidence 998766632 33333322 23455677888899999987766654332 26778899999999998 555433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eC--C-ccc--c
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TG--E-KLL--T 274 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~--~-~~~--~ 274 (320)
++|- ....+.++.+++...+..+|+..+.+-. ...++.-.....++.+|++.+- .| + .|- .
T Consensus 175 ------~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~ 244 (287)
T PRK05692 175 ------GDTI----GVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGA 244 (287)
T ss_pred ------cccc----CccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCc
Confidence 2332 2356788888888887777653332210 0012222233568899999872 22 1 111 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++....++++.+++..|+..
T Consensus 245 aGN~~~E~lv~~L~~~g~~t 264 (287)
T PRK05692 245 SGNVATEDVLYMLHGLGIET 264 (287)
T ss_pred cccccHHHHHHHHHhcCCCC
Confidence 45678999999999888764
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00082 Score=59.18 Aligned_cols=213 Identities=13% Similarity=0.108 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccC-----CCCCCchhHHHHHHHHHHhhh-c-Cce--EEEeCCCCCHHHHHHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRKTNFNQILEYVKDIRD-M-GME--VCCTLGMLEKHQAIELK 125 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~-----~~~ge~~~~~~l~~~i~~~k~-~-~~~--i~~~~g~l~~e~l~~L~ 125 (320)
.++.++.++.++.+.+.|++.+-++.... ...+ +... .=.+.++.+++ . +.+ +...++....+.++...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~-~~~~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYG-FAAH-TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccC-CCCC-ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 38999999999999999999988862110 0000 1111 11223333321 1 333 34456666678899999
Q ss_pred HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 126 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 126 ~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
++|++.+.+..... +.....+.++.+++.|+.+..+++-....+++.+.+.++.+.+.| ++.+.+
T Consensus 96 ~~g~~~iri~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l-- 160 (263)
T cd07943 96 DLGVDVVRVATHCT-----------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYV-- 160 (263)
T ss_pred HcCCCEEEEEechh-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 99999988755322 223568899999999999888876655678899999999999998 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcee--ecCCcccccChhHHHHHHHcCCceEe---eCCccccCCCCCh
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV--RLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDF 280 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i--~~~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~ 280 (320)
++|- ....|+++.+++...|..++...+ ..-.. .++--.....++.+|++.+- .|-+ ..++....
T Consensus 161 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~-~GlA~AN~laAi~aGa~~vd~s~~GlG-~~aGN~~~ 230 (263)
T cd07943 161 ----TDSA----GAMLPDDVRERVRALREALDPTPVGFHGHNN-LGLAVANSLAAVEAGATRIDGSLAGLG-AGAGNTPL 230 (263)
T ss_pred ----cCCC----CCcCHHHHHHHHHHHHHhCCCceEEEEecCC-cchHHHHHHHHHHhCCCEEEeeccccc-CCcCCccH
Confidence 2332 246688888888888877765111 11110 11111223567889998772 2210 12456788
Q ss_pred hHHHHHHHHcCCCc
Q 020848 281 DADQLMFKVLGLTP 294 (320)
Q Consensus 281 ~~~~~~i~~~G~~p 294 (320)
++++.+++..|+.+
T Consensus 231 E~lv~~L~~~g~~~ 244 (263)
T cd07943 231 EVLVAVLERMGIET 244 (263)
T ss_pred HHHHHHHHhcCCCC
Confidence 89899998888764
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00071 Score=61.61 Aligned_cols=214 Identities=13% Similarity=0.085 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccC-----CCCCCc--hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~-----~~~ge~--~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++.+.++.+.+.|++.|-++-+.. ...|.+ ...+.+..+.+..++..+.....+|.-+.+.++...++|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 8999999999999999999988852211 001211 112222222222222233344556766788999999999
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
++.+.+.... ...+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 102 vd~iri~~~~-----------~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i----- 163 (337)
T PRK08195 102 VRVVRVATHC-----------TEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYV----- 163 (337)
T ss_pred CCEEEEEEec-----------chHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEe-----
Confidence 9998876421 1234568899999999999988888767778999999999999998 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~-p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~~~~ 283 (320)
.+|- ....++++.+++...+..+ |+..+.+-+ ...++.-.....++.+|++.+-. |-+ ..++....+++
T Consensus 164 -~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG-~~aGN~~tE~l 237 (337)
T PRK08195 164 -VDSA----GALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLG-AGAGNTPLEVL 237 (337)
T ss_pred -CCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhc-ccccCccHHHH
Confidence 2221 2466888888888888777 343332210 00112122335678899997622 210 12445678888
Q ss_pred HHHHHHcCCC
Q 020848 284 QLMFKVLGLT 293 (320)
Q Consensus 284 ~~~i~~~G~~ 293 (320)
+.++.+.|+.
T Consensus 238 v~~L~~~g~~ 247 (337)
T PRK08195 238 VAVLDRMGWE 247 (337)
T ss_pred HHHHHhcCCC
Confidence 8888888875
|
|
| >TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.9e-06 Score=67.07 Aligned_cols=85 Identities=15% Similarity=0.279 Sum_probs=56.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchh---HHHHHHHHHHhhhc
Q 020848 30 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDM 105 (320)
Q Consensus 30 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~---~~~l~~~i~~~k~~ 105 (320)
..+||++|.||..+.... ......++.+++.+.++.+...+ +..|.|+| |||+. .+.+.++++.+|+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~--~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sG------GEPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWN--FNGGKEFTEALEKEIIRDLNDNPLIDGLTLSG------GDPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccC--CCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeC------hhhCCCCCHHHHHHHHHHHHHh
Confidence 468999999998654321 11223488666666666666554 56787776 45653 47899999999854
Q ss_pred -Cce-EEEeCCCCCHHHHH
Q 020848 106 -GME-VCCTLGMLEKHQAI 122 (320)
Q Consensus 106 -~~~-i~~~~g~l~~e~l~ 122 (320)
+.. +..++|...++.++
T Consensus 94 ~~~~~~~~~tG~~~~~~~~ 112 (154)
T TIGR02491 94 FPEKDIWLWTGYTWEEILE 112 (154)
T ss_pred CCCCCEEEeeCccHHHHhc
Confidence 554 66788876665543
|
This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=58.90 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+-++.++.+.+.|++.|-+++...+... |. +.+-.+.++.+.. .+..+..-. ...+.+++..++|++.+
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~-~~d~~~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ-MADAEEVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDEV 90 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc-cCCHHHHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCEE
Confidence 3489999999999999999999988754332211 21 1122234444442 244432222 46778999999999999
Q ss_pred ccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+-+.+ -....++.. ...+...+.++.+++.|+.+..++..-++ -+.+.+.+.++.+.++| ++.+.+
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l 168 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLG--CDEISL 168 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 98887773 334444433 34577788899999999998777665442 25677888888888887 554433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eC---Ccc--cc
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TG---EKL--LT 274 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~---~~~--~~ 274 (320)
++|- ...+|.++.+++...+..+|+..+.+-. ...++-......++.+|++.+- .| ..| ..
T Consensus 169 ------~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~er 238 (274)
T cd07938 169 ------GDTI----GVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGA 238 (274)
T ss_pred ------CCCC----CccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCc
Confidence 2332 2356788888888887777753332211 0012222234568899998772 22 111 13
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++....++++.+++..|+.+
T Consensus 239 aGN~~~E~lv~~L~~~g~~t 258 (274)
T cd07938 239 TGNVATEDLVYMLEGMGIET 258 (274)
T ss_pred cCCcCHHHHHHHHHhcCCCC
Confidence 55678899999999888764
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.8e-06 Score=65.26 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--CEEEEecccCCCCCCch---hHHHHHHHHHHhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKT---NFNQILEYVKDIR 103 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~--~~i~l~~g~~~~~ge~~---~~~~l~~~i~~~k 103 (320)
...+||++|.||....... ......++.+.+.+.++.+...+. ..|.|+| |||+ ..+.+.++++++|
T Consensus 22 f~~GCnl~C~~C~n~~~~~--~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sG------GEPl~~~~~~~l~~l~~~~k 93 (154)
T PRK11121 22 FVSGCVHQCPGCYNKSTWR--LNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSG------GDPLHPQNVPDILKLVQRVK 93 (154)
T ss_pred EcCCCCCcCcCCCChhhcc--CCCCcccCHHHHHHHHHHHHHhCCCCCcEEEEC------CCccchhhHHHHHHHHHHHH
Confidence 3489999999997653211 111222454444444444444443 5677766 4564 4577888888887
Q ss_pred hc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 104 DM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 104 ~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+. +..+.+.+|...++.... .+.-++.+.+-+|+
T Consensus 94 ~~~~~~~i~~~tGy~~eel~~~-~~~~l~~~DvlvDG 129 (154)
T PRK11121 94 AECPGKDIWVWTGYKLDELNAA-QRQVVDLIDVLVDG 129 (154)
T ss_pred HHCCCCCEEEecCCCHHHHHHH-HHHHHhhCCEEEec
Confidence 43 456778889765554322 22224444455555
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00098 Score=60.60 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+=++.++.+.+.|++.|-++....+. .-|. +.+-.+.++.+++ .+..+..- ....+.++...++|++.|
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk-~vPq-mad~~ev~~~i~~~~~~~~~~l--~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFVSPK-WVPQ-LADAKDVMAAVRNLEGARFPVL--TPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcc-cccc-cccHHHHHHHHHhccCCceeEE--cCCHHHHHHHHHcCcCEE
Confidence 44899999999999999999999886532111 1121 2233334444443 23332111 137899999999999999
Q ss_pred ccCccccHHH-HhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeE--EEEe---C-CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSREF-YSKIITT--RSYDERLETLKHVREAGINVCSGG--IIGL---G-EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~~~-~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~--i~Gl---g-et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+-+.+.. ..+++.. ..++...+.++.+++.|+.+..++ .+|. + -+.+.+.+.++.+.+.| ++.|.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G--ad~I~l 216 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG--CYEISL 216 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 9988665432 2233222 244555678888999999887555 3443 1 25677888888888888 555433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec--CCcccccChhHHHHHHHcCCceEe---eC---Cccc--
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL--SAGRVRFSMPEQALCFLAGANSIF---TG---EKLL-- 273 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~---~~---~~~~-- 273 (320)
.+|- ....+.++.+++...+..+|...+.+ -.. .++--.....++.+|+..+- .| ..|-
T Consensus 217 ------~DT~----G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd-~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~g 285 (347)
T PLN02746 217 ------GDTI----GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDT-YGQALANILVSLQMGISTVDSSVAGLGGCPYAKG 285 (347)
T ss_pred ------cCCc----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCC-CChHHHHHHHHHHhCCCEEEEecccccCCCCCCC
Confidence 2332 23457788888887777676432222 110 12222234568899999872 22 1122
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 020848 274 TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++....++++.+++.+|+..
T Consensus 286 raGN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 286 ASGNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CCCChhHHHHHHHHHhcCCCC
Confidence 245577899999999988764
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00091 Score=61.74 Aligned_cols=218 Identities=14% Similarity=0.182 Sum_probs=139.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++.++.++.+.+.|++.|-++. +..+ +.=.+.++.+.+. +..+ ........+.++...++|++.
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~i-~~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGI---PAMG-----EEERAVIRAIVALGLPARL-MAWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----HHHHHHHHHHHHcCCCcEE-EEEcCCCHHHHHHHHcCCcCE
Confidence 348999999999999999999998752 2222 2224445555433 2333 223345688899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+-+.+ ....+++.. ...+...+.++.+++.|+.+..++..+..-+++.+.+.++.+.+.| ++.+.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------ 160 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG--ADRFR------ 160 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC--cCEEE------
Confidence 998886663 344444432 2345566889999999998887776655567888899999999888 55432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
+++|- ....+.++.+++...+..++ ..+.+-+ ...++--.....++.+||+.+ +.|-+ ..++..+.++++
T Consensus 161 l~DT~----G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiG-eraGN~~lE~lv 234 (365)
T TIGR02660 161 FADTV----GILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG-ERAGNAALEEVA 234 (365)
T ss_pred EcccC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccc-cccccCCHHHHH
Confidence 23432 24567788888877765543 1121110 001111223456889999987 23321 235567788888
Q ss_pred HHH-HHcCCCc
Q 020848 285 LMF-KVLGLTP 294 (320)
Q Consensus 285 ~~i-~~~G~~p 294 (320)
..+ ...|+.+
T Consensus 235 ~~L~~~~g~~~ 245 (365)
T TIGR02660 235 MALKRLLGRDT 245 (365)
T ss_pred HHHHHhcCCCC
Confidence 888 6677764
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0015 Score=57.45 Aligned_cols=212 Identities=14% Similarity=0.124 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccc--CCCC-CCc--hhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAW--RDTI-GRK--TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~--~~~~-ge~--~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
.++.++..+.++.+.+.|++.|-++-.. .... +-. ...+.+..+.+..+ +..+.....++..+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3899999999999999999998876211 0000 000 11233333333332 3334445566666788898889999
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
++.+.+.. +...++...+.++.+++.|+.+..+++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 96 v~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g--~~~i~l----- 157 (266)
T cd07944 96 VDMIRVAF-----------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK--PDVFYI----- 157 (266)
T ss_pred cCEEEEec-----------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 99988864 234788889999999999999999988877888999999999999987 655433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~~~~ 283 (320)
++|- ....|+++.+++...+..++. ..+.+-+ ...++.......++.+||..+- .|-+- .++..+.+++
T Consensus 158 -~DT~----G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~-~aGN~~~E~~ 231 (266)
T cd07944 158 -VDSF----GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR-GAGNLPTELL 231 (266)
T ss_pred -ecCC----CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC-CcCcHHHHHH
Confidence 2331 246688888888888877663 2222210 0011212233567889998762 22100 2455678888
Q ss_pred HHHHHHc
Q 020848 284 QLMFKVL 290 (320)
Q Consensus 284 ~~~i~~~ 290 (320)
+.++...
T Consensus 232 v~~l~~~ 238 (266)
T cd07944 232 LDYLNNK 238 (266)
T ss_pred HHHHHHh
Confidence 8888776
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0021 Score=56.79 Aligned_cols=215 Identities=15% Similarity=0.148 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhc----
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG---- 128 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aG---- 128 (320)
.++.++.++.++.+.+.|++.|-++... .+ |..+ +.++.+.+. +..+..-. ....+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~-~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPA---AS-PGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC-HHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCC
Confidence 4899999999999999999999886421 11 2222 444554432 33332111 12367778888888
Q ss_pred cCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 129 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 129 ld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
++.+.+..-..+ .....++.. ..++...+.++.+++.|+.+..+++.+...+++.+.+.++.+.++| ++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l-- 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG--ATTINI-- 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 998888765553 344444432 3467788899999999999887777766668888999999999998 555433
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--ceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCC
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK--AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 279 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~--~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~ 279 (320)
++|- ....++++.+++...|..+|+ ..+.+-. ...++.-.....++.+|+..+ +.|-+ ..++...
T Consensus 163 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~aGN~~ 233 (268)
T cd07940 163 ----PDTV----GYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAA 233 (268)
T ss_pred ----CCCC----CCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-ccccccc
Confidence 2331 236688888888888887775 2222110 001111122356788999877 22211 2345678
Q ss_pred hhHHHHHHHHcC
Q 020848 280 FDADQLMFKVLG 291 (320)
Q Consensus 280 ~~~~~~~i~~~G 291 (320)
.++++.++...|
T Consensus 234 tE~lv~~L~~~~ 245 (268)
T cd07940 234 LEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHHHhcc
Confidence 899999998886
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=62.59 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcC--CCE--EEEecccCCCCCCchhHHHHHHHHHH-------------hh---h-----cCceEE
Q 020848 56 MTKDAVMQAAQKAKEAG--STR--FCMGAAWRDTIGRKTNFNQILEYVKD-------------IR---D-----MGMEVC 110 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g--~~~--i~l~~g~~~~~ge~~~~~~l~~~i~~-------------~k---~-----~~~~i~ 110 (320)
-+.++....++.++..| ++. +.+-||+.....+ ...+.++.-+.. ++ + .|+.+.
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe-~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIE 228 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPE-EYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIE 228 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChH-HHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEee
Confidence 35677777888888877 333 3344554443332 222333222211 11 0 133344
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-C-CCHHHHHHH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G-EAEEDRVGL 187 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g-et~ed~~~~ 187 (320)
+.+..-....+..+...|+.++.+++++. +++-+.-.++|+...+-+.+..++++|+++.+++|..+ + .-+.|+...
T Consensus 229 TRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF 308 (554)
T KOG2535|consen 229 TRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQF 308 (554)
T ss_pred cCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHH
Confidence 55555568889999999999999999999 88888888899999999999999999999999999887 3 344577777
Q ss_pred HHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 188 LHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 188 l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
.+++..=.-.++-+.+++-..+.||.+.. ...-++.++..++|..-.+.|.
T Consensus 309 ~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPP 365 (554)
T KOG2535|consen 309 KEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPP 365 (554)
T ss_pred HHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCc
Confidence 77776543236778888888888987643 3456788888887755445554
|
|
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.9e-06 Score=68.65 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=58.5
Q ss_pred ccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc
Q 020848 29 KTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM 107 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~ 107 (320)
-..|||++|.||........ ....+..++.++|++.++... .+...|+|+| |||...+.+.++++.+++.|+
T Consensus 28 R~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTG------GEP~~~~~l~~Ll~~l~~~g~ 100 (212)
T COG0602 28 RFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTG------GEPLLQPNLLELLELLKRLGF 100 (212)
T ss_pred EcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeC------CcCCCcccHHHHHHHHHhCCc
Confidence 46799999999975432110 012345589999998887532 2344787776 578777789999999998898
Q ss_pred eEEE-eCCCCCHHH
Q 020848 108 EVCC-TLGMLEKHQ 120 (320)
Q Consensus 108 ~i~~-~~g~l~~e~ 120 (320)
++.. |+|.+....
T Consensus 101 ~~~lETngti~~~~ 114 (212)
T COG0602 101 RIALETNGTIPVWT 114 (212)
T ss_pred eEEecCCCCccccc
Confidence 8644 567654443
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.008 Score=53.18 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---CceEE--E---eCCC--CCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVC--C---TLGM--LEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~--~---~~g~--l~~e~l~~ 123 (320)
..++.|+..+.++.+.+.|++.|-++.+. .. |.. .+.++.+.+. +.++. . ..+. ..+..++.
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWPG---SN-PKD----TEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc---CC-HHH----HHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHH
Confidence 44899999999999999999999885421 11 223 3333444322 22221 1 1222 23457888
Q ss_pred HHHhccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEE---EeCCCHHHHHHHHHHHhcCCCC
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGII---GLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~---Glget~ed~~~~l~~l~~l~~~ 197 (320)
+.++|++.+.+.+-+.+ .....+++. ..++...+.++.+++.|+.+..+.+. +...+++.+.+.++.+.+.|
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g-- 164 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-- 164 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC--
Confidence 99999999988776663 334444332 46777888999999999987775442 22345777788888888887
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~ 273 (320)
++.+.+ ++|- ....|+++.+++...+..+|+..+.+-. ...++.-.....++.+||..+- .|-+ .
T Consensus 165 ~~~i~l------~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlG-e 233 (273)
T cd07941 165 ADWLVL------CDTN----GGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYG-E 233 (273)
T ss_pred CCEEEE------ecCC----CCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccc-c
Confidence 554332 2332 2456788888888888777763332210 0012222234568889998772 2211 1
Q ss_pred cCCCCChhHHHHHHH-HcCC
Q 020848 274 TTPNNDFDADQLMFK-VLGL 292 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~-~~G~ 292 (320)
.++..+.++++..++ ..|+
T Consensus 234 raGn~~~e~~~~~L~~~~~~ 253 (273)
T cd07941 234 RCGNANLCSIIPNLQLKMGY 253 (273)
T ss_pred ccccccHHHHHHHHHhccCC
Confidence 345567777777776 4565
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0055 Score=58.66 Aligned_cols=217 Identities=14% Similarity=0.144 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++-++.++.+.+.|++.|-++.. ..+ +.. .+.++.+.+.+ .++..- .....+.++.+.++|++.
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p---~~~-~~d----~e~v~~i~~~~~~~~i~a~-~r~~~~di~~a~~~g~~~ 89 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGSA---ITS-EGE----REAIKAVTDEGLNAEICSF-ARAVKVDIDAALECDVDS 89 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeCC---cCC-HHH----HHHHHHHHhcCCCcEEEee-cccCHHHHHHHHhCCcCE
Confidence 3489999999999999999999987642 111 222 34445554332 333221 223467799999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+.+.+ .....++.. ..++...+.++.+++.|+.+..+..-+...+.+-+.+.++.+.+.| ++.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~l----- 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG--ADRICF----- 162 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 999887773 333334322 2456777788889999998887776655556777888999988887 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec--CCcccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL--SAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~ 283 (320)
++|- ....|.++.+++...+...+ ..+.+ -.. .++--.....++.+||..+ +.|-+ ..++..+.+++
T Consensus 163 -~DTv----G~~~P~~~~~lv~~l~~~~~-v~l~~H~HND-~GlAvANalaAv~aGa~~Vd~Ti~GiG-ERaGNa~lE~l 234 (488)
T PRK09389 163 -CDTV----GILTPEKTYELFKRLSELVK-GPVSIHCHND-FGLAVANTLAALAAGADQVHVTINGIG-ERAGNASLEEV 234 (488)
T ss_pred -ecCC----CCcCHHHHHHHHHHHHhhcC-CeEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEccccc-ccccCccHHHH
Confidence 3442 23556777777776655443 11111 110 1111123456889999887 33321 24556778888
Q ss_pred HHHHHH-cCCCc
Q 020848 284 QLMFKV-LGLTP 294 (320)
Q Consensus 284 ~~~i~~-~G~~p 294 (320)
+.+++. .|..+
T Consensus 235 v~~L~~~~g~~~ 246 (488)
T PRK09389 235 VMALKHLYDVET 246 (488)
T ss_pred HHHHHhhcCCCC
Confidence 887876 36654
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.012 Score=52.30 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHH-HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHHHhc
Q 020848 54 KLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 54 ~~~s~eei~~~~~~~-~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
..+|.|+-++.++.+ .+.|++.|-++. +... |..++.+.++.+..... ++.+..-. .....++...++|
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s-~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g 87 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVAS---ARVS-EGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAG 87 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecC---CCCC-HHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCC
Confidence 348999999999986 667999998864 1111 22333344333322211 23332211 2356788899999
Q ss_pred cCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC----CCHHHHHHHHHHHhcCCCCCCee
Q 020848 129 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG----EAEEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 129 ld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg----et~ed~~~~l~~l~~l~~~~~~v 201 (320)
++.+.+.+-+++ ....++++. ..++++.+.++.+++.|+.+..++.- .+ -+++.+.+.++.+.++| ++.+
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G--~~~i 164 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLP--IKRI 164 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcC--CCEE
Confidence 999999886663 344444432 35677788888999999988777654 32 36788899999999998 5554
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCC
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 277 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~ 277 (320)
.+ ++|- ....|.++.+++...+..+|+..+.+-. ...++.-.....++.+|++.+ +.|-+ ..++.
T Consensus 165 ~l------~DT~----G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG-e~aGN 233 (280)
T cd07945 165 ML------PDTL----GILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG-ERAGN 233 (280)
T ss_pred Ee------cCCC----CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccC
Confidence 33 2332 2356777888888777766654332211 001222223456889999877 22221 23456
Q ss_pred CChhHHHHHHHH-cCCCc
Q 020848 278 NDFDADQLMFKV-LGLTP 294 (320)
Q Consensus 278 ~~~~~~~~~i~~-~G~~p 294 (320)
...++++.+++. .|+..
T Consensus 234 ~~~E~~v~~L~~~~g~~t 251 (280)
T cd07945 234 APLASVIAVLKDKLKVKT 251 (280)
T ss_pred ccHHHHHHHHHHhcCCCc
Confidence 788899988854 78764
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0096 Score=52.75 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CC------CCCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LG------MLEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g------~l~~e 119 (320)
.++.++.++.++.+.+.|+..|-++++.... .++ ...+.+.++.+...+..+..... .| ...++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 4899999999999999999999887532100 121 12333333333222222222211 11 13677
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|++.|.+... ..+.+...+.++.+++.|+.+...+.+ +...+++.+.+.++.+.+.|
T Consensus 96 di~~~~~~g~~~iri~~~-----------~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-- 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDA-----------LNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-- 162 (275)
T ss_pred HHHHHHHcCCCEEEEeec-----------CChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC--
Confidence 888899999999888652 234678899999999999887765543 33467888999999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~ 273 (320)
++.+.+ .+|- ....++++.+++...|..++ ..+.+-. ...++-......++.+||..+- .|-+ .
T Consensus 163 a~~i~l------~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG-~ 230 (275)
T cd07937 163 ADSICI------KDMA----GLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLS-G 230 (275)
T ss_pred CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-C
Confidence 665443 2331 33567888888888887665 2221100 0011222233567889998872 2210 1
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 020848 274 TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++..+.++++.+++..|+..
T Consensus 231 ~aGN~~~E~l~~~L~~~g~~~ 251 (275)
T cd07937 231 GTSQPSTESMVAALRGTGRDT 251 (275)
T ss_pred CcCChhHHHHHHHHHccCCCC
Confidence 245577888899998888753
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00065 Score=62.93 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=92.8
Q ss_pred eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCH-HHHHHHHH
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLH 189 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~ 189 (320)
|...++++.+++..+.+++-+++|+.+. |++..++.+.....+.++.++++.++|+.+...+++-.|-|+ +++.+++.
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 3344889999999999999999999999 999999988888999999999999999998888887667666 68899999
Q ss_pred HHhcCCC-CCCeeeeeeeeecCCCCCC----CCCCCCHHHHHHHHHH
Q 020848 190 TLATLPT-HPESVPINALLAVKGTPLQ----DQKPVEIWEMIRMIAT 231 (320)
Q Consensus 190 ~l~~l~~-~~~~v~~~~~~p~~gt~~~----~~~~~~~~e~~~~~a~ 231 (320)
.|.+++. ....+.=...+|++=|.+. ...+.+.++..+.+..
T Consensus 202 dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ 248 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQ 248 (433)
T ss_pred HHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHH
Confidence 9998821 0123344455677766653 3356667666666543
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0081 Score=57.96 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=129.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHH----HHHHh
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAI----ELKKA 127 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~----~L~~a 127 (320)
..++.++-++.++.+.+.|++.|-++.. ..+ |..++.+ +.+.+. +..+..-. ....+.++ .++++
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p---~~s-~~d~~~v----~~i~~~~~~~~i~a~~-r~~~~did~a~~a~~~~ 91 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLGVDVIEAGFP---ASS-PGDFEAV----KRIARTVKNSTVCGLA-RAVKKDIDAAAEALKPA 91 (513)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCC---CCC-hHHHHHH----HHHHhhCCCCEEEEEc-cCCHHHHHHHHHHhhcC
Confidence 3489999999999999999999987531 112 2233333 444321 33332211 11233344 44478
Q ss_pred ccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.++|.+.+.+.+ .....++.. ...+...+.++.+++.|+.+..+..-+..-+.+.+.+.++.+.+.| ++.+.+
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~G--a~~i~l- 168 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAG--ATTINI- 168 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcC--CCEEEE-
Confidence 8888998887773 344444332 2445566888899999998877766555456777899999999888 554332
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCC
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 277 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~ 277 (320)
++|- ....|.++.+++..++..+|. ..+.+-+ .-.++--.....++.+||..+ +.|-+ ..++.
T Consensus 169 -----~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlG-ERaGN 238 (513)
T PRK00915 169 -----PDTV----GYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGN 238 (513)
T ss_pred -----ccCC----CCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeeccc-ccccC
Confidence 3442 235678888888887776664 2222211 001111123456889999987 33321 23455
Q ss_pred CChhHHHHHHHHc
Q 020848 278 NDFDADQLMFKVL 290 (320)
Q Consensus 278 ~~~~~~~~~i~~~ 290 (320)
.+.++++..++..
T Consensus 239 a~lE~vv~~L~~~ 251 (513)
T PRK00915 239 AALEEVVMALKTR 251 (513)
T ss_pred ccHHHHHHHHHhh
Confidence 6777777777654
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.016 Score=49.48 Aligned_cols=196 Identities=9% Similarity=-0.003 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l-~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++-.+.++++.+.+.|++.+++ ...++..-. -..=+++++.++. .. ++.+++++ .++.++.+.++|.|.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN-itfGp~~i~~i~~--~~~~DvHLMv~~---P~~~i~~~~~aGad~I 95 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPF-FTVGAIAIKQFPT--HCFKDVHLMVRD---QFEVAKACVAAGADIV 95 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-cccCHHHHHHhCC--CCCEEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 45568888888888899998876 221111100 0111344444432 22 22333332 4678999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+.+ +..+.++..++.|+.+..++.+..+-..+.+...+.. ++.|-++.-.| |.
T Consensus 96 t~H~Ea~~-------------~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P--Gf 153 (228)
T PRK08091 96 TLQVEQTH-------------DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP--RT 153 (228)
T ss_pred EEcccCcc-------------cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC--CC
Confidence 99887631 1356778889999867778777666566666555543 45677777655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
. .+.. ....+..+..+|.+.+. ..|.+.+ ++..+.......+||+.++.|..+.. ..+..+.++.++
T Consensus 154 g--GQ~f--~~~~l~KI~~lr~~~~~~~~~~~IeVDG---GI~~~ti~~l~~aGaD~~V~GSalF~--~~d~~~~i~~l~ 224 (228)
T PRK08091 154 G--TKAP--SDLILDRVIQVENRLGNRRVEKLISIDG---SMTLELASYLKQHQIDWVVSGSALFS--QGELKTTLKEWK 224 (228)
T ss_pred C--Cccc--cHHHHHHHHHHHHHHHhcCCCceEEEEC---CCCHHHHHHHHHCCCCEEEEChhhhC--CCCHHHHHHHHH
Confidence 2 2121 12234445555554433 2244443 34444446778899999988874432 223555555544
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.026 Score=53.83 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=135.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~------l~~e 119 (320)
.++.++.+..++.+.+.|+..+-..||-+.. .+| ..++.+-.+-+.+++..+..+.. .|. +-+.
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E-dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 3899999999999999999999887654332 222 23344444333344333443332 122 2245
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--EEEeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|+|.+.+.... .+.+....+++.++++|..+...+ +.+.-.+.+.+.+.++.+.+.|
T Consensus 102 fv~~a~~~Gidi~RIfd~l-----------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-- 168 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDAL-----------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-- 168 (499)
T ss_pred HHHHHHHcCCCEEEEEecC-----------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC--
Confidence 6777788899988875422 334566778888899998764454 3355678999999999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CceeecCC-cccccChhHHHHHHHcCCceEee---CCcc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKL 272 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~ 272 (320)
++.|.+ ++|. ....+.+..+++...+..+| +..+.+-+ ...++....-..++.+||+.+-. |-..
T Consensus 169 ad~I~I------kDta----Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~ 238 (499)
T PRK12330 169 ADSICI------KDMA----ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSL 238 (499)
T ss_pred CCEEEe------CCCc----cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccc
Confidence 665543 2332 34667888888888887775 43333211 01122222335688999998722 2111
Q ss_pred ccCCCCChhHHHHHHHHcCCCc
Q 020848 273 LTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 273 ~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++.++.++++.+++..|+..
T Consensus 239 -~aGn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 239 -GPGHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred -cccchhHHHHHHHHHhcCCCC
Confidence 234577889999999888754
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.054 Score=51.25 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~------l~~e 119 (320)
.++.++.++.++.+.+.|+..+-+.||.+.. .+ +..++.+..+-+.+++..+..... .|. +.++
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~-e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN-EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC-CCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 4899999999999999999999886553221 12 122222222222222222222121 122 3456
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|+|.+.+..-..+ . ....++++.+++.|+.+...+.+ +.-.+.+-+.+.++.+.+.|
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd-~----------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-- 167 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALND-V----------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-- 167 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCc-H----------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--
Confidence 778889999999888653331 1 23566889999999886554433 22357788888999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-c
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-T 274 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~ 274 (320)
++.|.+ ++|- ....+.+..+++...|..++ ..+.+-+ ...++.......++.+||+.+-..- .+- .
T Consensus 168 ad~I~i------~Dt~----G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~g 236 (448)
T PRK12331 168 ADSICI------KDMA----GILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGG 236 (448)
T ss_pred CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 555443 2332 23567777888887776664 2222210 0112222334568899999872210 111 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++..+.++++.+++..|+..
T Consensus 237 aGN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 237 TSQPATESMVAALQDLGYDT 256 (448)
T ss_pred cCCHhHHHHHHHHHhcCCCC
Confidence 55678889999998887764
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.043 Score=53.65 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--Cce--EEEe--C--CC------CCHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--GM------LEKHQ 120 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~--~--g~------l~~e~ 120 (320)
.++.++.++.++.+.+.|+..+-+.||-+....-+..-++=.+.++.+++. +.. .+.. | |. +.++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 489999999999999999999988755322210011112234444444431 233 2222 1 22 23556
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 198 (320)
++...++|+|.+.+..-.. +.+....+++.+++.|+.+...+-+-. -.+.+.+.+.++.+.+.| +
T Consensus 97 v~~a~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G--a 163 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALN-----------DPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG--V 163 (582)
T ss_pred HHHHHHCCCCEEEEEEecC-----------cHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 7888899999888764222 224567888999999998776644322 257888999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-cc-ccC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KL-LTT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~-~~~ 275 (320)
+.+.+ ++|. ....+.+..+++...|..++ ..+.+-+ ...++....-..++.+||+.+-..- ++ ..+
T Consensus 164 d~I~i------~Dt~----G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~t 232 (582)
T TIGR01108 164 DSICI------KDMA----GILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGT 232 (582)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccc
Confidence 54433 3332 23567778888887776665 2222110 0012222233568899999872210 01 134
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+..+.++++.+++..|+..
T Consensus 233 Gn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 233 SHPPTETMVAALRGTGYDT 251 (582)
T ss_pred cChhHHHHHHHHHhcCCCc
Confidence 5678888888888887654
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.066 Score=50.83 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceE--EEe--C--CC------CCHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEV--CCT--L--GM------LEKHQ 120 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i--~~~--~--g~------l~~e~ 120 (320)
.++.++.+..++.+.+.|+..+-+.||......-....++-.+.++.+++. +..+ ... | |. +-+..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 489999999999999999999988654321100000111223444444321 2332 112 1 22 11233
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 198 (320)
++...++|+|.+.+..-..+ .+....+++.+++.|..+...+-+ +...+.+-+.+.++.+.+.| +
T Consensus 101 v~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G--a 167 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG--V 167 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 77778889998888653322 345577889999999887655443 33457888899999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~ 275 (320)
+.|.+ ++|- ....+.+..+++...|..++ ..+.+-+ ...++.......++.+||+.+-..- .+- .+
T Consensus 168 d~I~i------~Dt~----G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~ga 236 (467)
T PRK14041 168 DSICI------KDMA----GLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGT 236 (467)
T ss_pred CEEEE------CCcc----CCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCC
Confidence 55433 2332 23567778888887776665 2222110 0012222233568899999872210 121 23
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+.++.++++.+++..|+..
T Consensus 237 gN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 237 SQPPFESMYYAFRENGKET 255 (467)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 4677888888888877653
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.04 Score=47.76 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+++++.++. .. ++.+++.+ .+..++.+.++|.|.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~--~~p~DvHLMV~~---P~~~i~~~~~aGad~ 101 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ--FTVGPWAVGQLPQ--TFIKDVHLMVAD---QWTAAQACVKAGAHC 101 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc--cccCHHHHHHhcc--CCCeeEEeeeCC---HHHHHHHHHHhCCCE
Confidence 45678888899988899998876 22211110 0111344444432 22 23334432 467799999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-------eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-------VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-------v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.+..|+. .. ..+.++..++.|.+ +..++.+..+-..+.+...+.. ++.|-++
T Consensus 102 It~H~Ea~----------~~---~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLvM 161 (254)
T PRK14057 102 ITLQAEGD----------IH---LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-------VEVIQLL 161 (254)
T ss_pred EEEeeccc----------cC---HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-------CCEEEEE
Confidence 99988863 11 24667777888874 4567776555555555555532 4567777
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.-.| |.. .+. . ..+.+..+..+|.+.+. ..|.+.+ ++..+.-.....+||+.++.|..+.
T Consensus 162 tV~P--Gfg--GQ~-F-i~~~l~KI~~lr~~~~~~~~~~~IeVDG---GI~~~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 162 AVNP--GYG--SKM-R-SSDLHERVAQLLCLLGDKREGKIIVIDG---SLTQDQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred EECC--CCC--chh-c-cHHHHHHHHHHHHHHHhcCCCceEEEEC---CCCHHHHHHHHHCCCCEEEEChHhh
Confidence 7655 432 111 1 12234444444444433 2344443 3444444567889999998887443
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.12 Score=50.79 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=129.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~------l~~e 119 (320)
.++.++.+..++.+.+.|+..+-+.||-+.. .+| ..++.+-.+.+.+.+..+..+.. .|. .-++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3889999999999999999999886552222 232 22333333333333333333332 121 1244
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE--EEeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|+|.+.+.. . -.+.+....+++.+++.|..+...+. .....+.+.+.+.++.+.+.|
T Consensus 102 ~v~~a~~~Gid~~rifd-~----------lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-- 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-A----------MNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-- 168 (593)
T ss_pred HHHHHHhcCCCEEEEee-e----------CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC--
Confidence 57788899999988863 1 12345678899999999987544433 333567888899999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEee---CCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~ 273 (320)
++.+.+ .+|. ....+.+..+++...+..+. ..+.+-+ ...++.......++.+||+.+-. |-+ .
T Consensus 169 ad~i~i------~Dt~----G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG-~ 236 (593)
T PRK14040 169 VDSLCI------KDMA----GLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMS-M 236 (593)
T ss_pred CCEEEE------CCCC----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEecccccc-c
Confidence 555443 2321 23567778888877776553 2222110 00122222335688999998722 210 1
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 020848 274 TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++.++.+.++.+++..|+..
T Consensus 237 ~~Gn~~le~vv~~L~~~~~~~ 257 (593)
T PRK14040 237 TYGHSATETLVATLEGTERDT 257 (593)
T ss_pred cccchhHHHHHHHHHhcCCCc
Confidence 345677888888888777653
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.08 Score=44.76 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+.+++.++......+ .+++++ .+..++.+.++|.|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN--~tfG~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~ 84 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINN--ITFGMKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGW 84 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCE
Confidence 35567888888888899988876 22211110 0111445555554322222 233332 467899999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..|+.+ . ..+.++.+++.|++. ++.+..+-..+.+...+.. ++.|-++.-.| |
T Consensus 85 It~H~Ea~~----------~---~~~~l~~Ik~~G~k~--GlAlnP~Tp~~~i~~~l~~-------vD~VlvMsV~P--G 140 (210)
T PRK08005 85 IFIHAESVQ----------N---PSEILADIRAIGAKA--GLALNPATPLLPYRYLALQ-------LDALMIMTSEP--D 140 (210)
T ss_pred EEEcccCcc----------C---HHHHHHHHHHcCCcE--EEEECCCCCHHHHHHHHHh-------cCEEEEEEecC--C
Confidence 999887631 1 246678888889765 4444444455555544432 45667766655 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
..-+ . . ..+.++.++.+|.+.+...+.+.+ ++..+.-.....+||+.++.|..+.
T Consensus 141 f~GQ--~-f-~~~~~~KI~~l~~~~~~~~I~VDG---GI~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 141 GRGQ--Q-F-IAAMCEKVSQSREHFPAAECWADG---GITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred Cccc--e-e-cHHHHHHHHHHHHhcccCCEEEEC---CCCHHHHHHHHHCCCCEEEEChHhh
Confidence 3311 1 1 223455566666666654455543 3444444567889999998886443
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.12 Score=50.77 Aligned_cols=215 Identities=13% Similarity=0.056 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--Cce--EEEe--C--C------CCCHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--G------MLEKHQ 120 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~--~--g------~l~~e~ 120 (320)
.++.++.+..+..+.+.|+..+-+.||-.....-....++-++.++.+++. +.. .+.. | | .+-++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 388999999999999999999988655321100001223445555555532 233 2222 1 2 124566
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 198 (320)
++...++|+|.+.+..-.. +......+++.+++.|..+...+.+ +...+.+.+.+.++.+.+.| +
T Consensus 102 v~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G--a 168 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALN-----------DVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG--C 168 (592)
T ss_pred HHHHHHCCCCEEEEEEecC-----------hHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 8888899999888754222 2345678889999999987766544 22457888999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC-Cccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG-EKLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~-~~~~-~~ 275 (320)
+.|.+ .+|. ....+.+..+++...|..++ ..+.+-+ ...++.......++.+||+.+-.. ..+- .+
T Consensus 169 d~I~i------~Dt~----G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~a 237 (592)
T PRK09282 169 DSICI------KDMA----GLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGT 237 (592)
T ss_pred CEEEE------CCcC----CCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCc
Confidence 55433 2332 23567777888887776664 2222210 001222223356889999987221 0111 23
Q ss_pred CCCChhHHHHHHHHcCCC
Q 020848 276 PNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~ 293 (320)
+.++.+.++.+++..|+.
T Consensus 238 gn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 238 SQPPTESMVAALKGTPYD 255 (592)
T ss_pred CCHhHHHHHHHHHhCCCC
Confidence 467788888888887765
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.17 Score=47.90 Aligned_cols=214 Identities=11% Similarity=0.068 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC------HHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE------KHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~------~e~ 120 (320)
++.++++..+..+.+.|+..+-+.||-+.. ..| ..++.+-.+-+.+++..+..... .|... +..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e-dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE-DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 889999999999999999999886653322 222 23444544444454444443332 12211 233
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 198 (320)
++...+.|+|.+.+.- . -.+.+....+++.+++.|..+...+.+-. ..+.+-+.+.++.+.++| +
T Consensus 111 v~~a~~~Gidi~Rifd--------~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G--a 177 (468)
T PRK12581 111 ISLSAQNGIDVFRIFD--------A---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG--A 177 (468)
T ss_pred HHHHHHCCCCEEEEcc--------c---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC--C
Confidence 7777888998877632 2 23667778899999999988654444422 456677888888888888 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~ 275 (320)
+.|.+ ++|. ....+.+..+++...+.. ++..+.+-+ ...++....-..++.+||+.+-..- .+- .+
T Consensus 178 d~I~I------kDta----G~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ga 246 (468)
T PRK12581 178 DSICI------KDMA----GILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGT 246 (468)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 55443 2322 245677777777777653 332222210 0112222233568899999872210 111 23
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+.++.++++.+++..|+..
T Consensus 247 gN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 247 SQPATESMYLALKEAGYDI 265 (468)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 4577888888888887764
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.094 Score=44.81 Aligned_cols=197 Identities=11% Similarity=0.091 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHh-hhcCc--eEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDI-RDMGM--EVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~-k~~~~--~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+.+++.++.. .+..+ .+++++ .+..++.+.++|.|
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN--~tfg~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad 87 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN--LTIGPMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGAT 87 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCC--cccCHHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 34567888888888899988876 33321110 01114455555544 22223 333332 46679999999999
Q ss_pred eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 131 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 131 ~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
.|.+..|+. .. ..+.++..++.|++. ++.+..+-..+.+...+.. ++.|-++.-.|
T Consensus 88 ~I~~H~Ea~----------~~---~~~~l~~Ir~~g~k~--GlalnP~T~~~~i~~~l~~-------vD~VlvMtV~P-- 143 (223)
T PRK08745 88 TISFHPEAS----------RH---VHRTIQLIKSHGCQA--GLVLNPATPVDILDWVLPE-------LDLVLVMSVNP-- 143 (223)
T ss_pred EEEEcccCc----------cc---HHHHHHHHHHCCCce--eEEeCCCCCHHHHHHHHhh-------cCEEEEEEECC--
Confidence 999988763 11 246778888888765 4444344454555544432 45677777655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC----CceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHH
Q 020848 211 GTPLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 211 gt~~~~~~~~~~~e~~~~~a~~R~~~p----~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
|..-+..-+ ..+..++.+|.+.+ +..|.+.+ ++..+.-.....+||+.++.|..+.. ..++.+.++.
T Consensus 144 Gf~GQ~fi~----~~l~KI~~l~~~~~~~~~~~~IeVDG---GI~~eti~~l~~aGaDi~V~GSaiF~--~~d~~~~~~~ 214 (223)
T PRK08745 144 GFGGQAFIP----SALDKLRAIRKKIDALGKPIRLEIDG---GVKADNIGAIAAAGADTFVAGSAIFN--APDYAQVIAQ 214 (223)
T ss_pred CCCCccccH----HHHHHHHHHHHHHHhcCCCeeEEEEC---CCCHHHHHHHHHcCCCEEEEChhhhC--CCCHHHHHHH
Confidence 433222111 22333444444433 23344443 34444445677899999999874332 2356777777
Q ss_pred HHHc
Q 020848 287 FKVL 290 (320)
Q Consensus 287 i~~~ 290 (320)
+++.
T Consensus 215 lr~~ 218 (223)
T PRK08745 215 MRAA 218 (223)
T ss_pred HHHH
Confidence 7654
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.15 Score=49.33 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=129.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---CceEEE-----eCCC--CCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLGM--LEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~~-----~~g~--l~~e~l~~ 123 (320)
..++.++.++.++.+.+.|++.|-++... .. |.. .+.++++.+. +.++.. ..+. ..+..++.
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~---as-~~d----~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~ 93 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGWPG---SN-PKD----TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA 93 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCc---CC-hhH----HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH
Confidence 44899999999999999999999875311 11 222 3334444321 233221 1122 24567889
Q ss_pred HHHhccCeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEE---EEeCCCHHHHHHHHHHHhcCCCC
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 197 (320)
+.++|++.+.+.+-+.+ .....++. ...++...+.++.+++.|.++..+.. -+.-.+.+-+.+.++.+.+.|
T Consensus 94 ~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G-- 171 (524)
T PRK12344 94 LLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-- 171 (524)
T ss_pred HHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCC--
Confidence 99999999999887763 33334432 23566777888889999998776554 222345666788888888887
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~ 273 (320)
++.+. +++|- ....|.++.+++...+..+ +..+.+-+ .-.++--.....++.+||..+ +.|-+ .
T Consensus 172 ad~i~------l~DTv----G~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlG-E 239 (524)
T PRK12344 172 ADWVV------LCDTN----GGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYG-E 239 (524)
T ss_pred CCeEE------EccCC----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-c
Confidence 55544 34443 3456777777777665544 22222111 001111223356889999987 22321 1
Q ss_pred cCCCCChhHHHHHHHH-cCC
Q 020848 274 TTPNNDFDADQLMFKV-LGL 292 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~-~G~ 292 (320)
.++....++++-.+.. .|+
T Consensus 240 RaGNa~lE~lv~~L~~~~g~ 259 (524)
T PRK12344 240 RCGNANLCSIIPNLQLKMGY 259 (524)
T ss_pred cccCcCHHHHHHHHHhccCC
Confidence 3455677777755543 675
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.21 Score=48.42 Aligned_cols=218 Identities=13% Similarity=0.113 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---CceEE--Ee---CCC--CCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVC--CT---LGM--LEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~--~~---~g~--l~~e~l~~ 123 (320)
..++.++-++.++.+.+.|++.|-++- +... |..++ .++++.+. +.+++ .. .+. ..+..++.
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G~---p~~s-~~d~~----~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea 89 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGGW---PGAN-PKDVQ----FFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQA 89 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-hHHHH----HHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHH
Confidence 348999999999999999999997752 1111 33333 33444322 23332 21 121 22567899
Q ss_pred HHHhccCeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEE---EEeCCCHHHHHHHHHHHhcCCCC
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 197 (320)
+.++|.+.+.+.+-+.+ .....++. ....+...+.++.+++.|..+..... -+.--+++.+.+.++.+.+.|
T Consensus 90 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aG-- 167 (526)
T TIGR00977 90 LIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAG-- 167 (526)
T ss_pred HhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCC--
Confidence 99999999999887773 33334432 22456667778899999988765443 333356788899999998887
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~ 273 (320)
++.+.+. +|- ....|.++.+++...+..+|...+-+-+ .-.++--.....++.+||..+ +.|-+ .
T Consensus 168 ad~i~i~------DTv----G~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiG-E 236 (526)
T TIGR00977 168 ADWLVLC------DTN----GGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYG-E 236 (526)
T ss_pred CCeEEEe------cCC----CCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-C
Confidence 6655442 332 2456788888888887777653232211 001111123456889999987 22321 1
Q ss_pred cCCCCChhHHHHHHH-HcCC
Q 020848 274 TTPNNDFDADQLMFK-VLGL 292 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~-~~G~ 292 (320)
.++..+.++++-.+. ..|+
T Consensus 237 RaGNa~Le~v~~~L~~~~g~ 256 (526)
T TIGR00977 237 RCGNANLCSLIPNLQLKLGY 256 (526)
T ss_pred ccCCCcHHHHHHHHHhhcCC
Confidence 334455555555444 3555
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.19 Score=48.26 Aligned_cols=217 Identities=16% Similarity=0.126 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---------Cc-eEEEeCCCCCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---------GM-EVCCTLGMLEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---------~~-~i~~~~g~l~~e~l~~ 123 (320)
..++.|+-++.++.+.+.|++.|-++. +..+ +.-.+.++.+.+. ++ ......+....+.++.
T Consensus 101 v~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s-----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~ 172 (503)
T PLN03228 101 GSLTPPQKLEIARQLAKLRVDIMEVGF---PGSS-----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEA 172 (503)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHH
Confidence 348999999999999999999887753 2212 2333334444321 11 1112223334445555
Q ss_pred HHHh----ccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 124 LKKA----GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 124 L~~a----Gld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
-.++ |.++|.+.+-+.+ -...+++.. ...+...+.++.+++.|+. +..++-.+.--+.+.+.+.++.+.+.|
T Consensus 173 a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 173 AWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred HHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC
Confidence 5444 7778888776663 233344332 2456677788889999985 444443322234555688888888887
Q ss_pred CCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--Cc-ccccChhHHHHHHHcCCceEe---e
Q 020848 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--AG-RVRFSMPEQALCFLAGANSIF---T 268 (320)
Q Consensus 196 ~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~g-~~~~~~~~~~~~~~~Gan~~~---~ 268 (320)
++.+.+ ++|- ....+.++.+++...+..+|.. .+++. +- ..++--.....++.+||..+- .
T Consensus 253 --ad~I~l------~DTv----G~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~ 320 (503)
T PLN03228 253 --ATSVGI------ADTV----GINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTIN 320 (503)
T ss_pred --CCEEEE------ecCC----CCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecc
Confidence 555432 3332 3356777888887777666532 12221 10 011112233568899999872 2
Q ss_pred CCccccCCCCChhHHHHHHHHcC
Q 020848 269 GEKLLTTPNNDFDADQLMFKVLG 291 (320)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~i~~~G 291 (320)
|-+ ..++....++++.+++..|
T Consensus 321 GiG-ERaGNa~lEevv~~L~~~~ 342 (503)
T PLN03228 321 GIG-ERSGNASLEEVVMALKCRG 342 (503)
T ss_pred ccc-cccCCccHHHHHHHHHhcc
Confidence 321 1345677888888887744
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.099 Score=50.28 Aligned_cols=214 Identities=15% Similarity=0.093 Sum_probs=127.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHH----HHHHh
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAI----ELKKA 127 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~----~L~~a 127 (320)
..++.++-++.++.+.+.|++.|-++. +..+ +..++. ++.+.+. +..++.- ....++.++ .+..+
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEvG~---p~~s-~~d~e~----v~~i~~~~~~~~i~al-~r~~~~did~a~~al~~~ 88 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEAGF---PVSS-PGDFEA----VQRIARTVKNPRVCGL-ARCVEKDIDAAAEALKPA 88 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEEC---CCCC-HHHHHH----HHHHHHhCCCCEEEEE-cCCCHHhHHHHHHhcccc
Confidence 338999999999999999999997753 1112 223333 3444321 2333221 122344444 44445
Q ss_pred ccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
+.++|.+.+-+.+ ....+++.. ...+...+.++.+++.|..+..+..-+..-+.+.+.++++.+.+.| ++.+.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G--a~~i~-- 164 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAG--ATTIN-- 164 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC--CCEEE--
Confidence 7788888877773 333444322 2345566788889999988777766655557788899999999887 55433
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--C-cccccChhHHHHHHHcCCceE---eeCCccccCCC
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--A-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 277 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~ 277 (320)
+++|- ....|.++.+++...+..+|.. .+.++ + .-.++--.....++.+||..+ +.|-+ ..++.
T Consensus 165 ----l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG-ERaGN 235 (494)
T TIGR00973 165 ----IPDTV----GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG-ERAGN 235 (494)
T ss_pred ----eCCCC----CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc-ccccC
Confidence 33443 2356778888888777766642 12221 0 001111123456889999987 33321 23455
Q ss_pred CChhHHHHHHHH
Q 020848 278 NDFDADQLMFKV 289 (320)
Q Consensus 278 ~~~~~~~~~i~~ 289 (320)
.+.++++-.++.
T Consensus 236 a~le~vv~~L~~ 247 (494)
T TIGR00973 236 AALEEVVMALKV 247 (494)
T ss_pred ccHHHHHHHHHH
Confidence 677777766654
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.13 Score=48.14 Aligned_cols=193 Identities=13% Similarity=0.184 Sum_probs=123.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEe-CC--CCCHHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~-~g--~l~~e~l~~L~~aGl 129 (320)
..++.|+-++.++.+.+.|++.|-.+... .-+.-.+.++.+. ..+..+.+. .+ ...+..++.+.++|+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~--------~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPV--------ASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc--------CChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCC
Confidence 34899999999999999999999775421 2233333444433 333311111 11 134568999999999
Q ss_pred CeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 130 TAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 130 d~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
+.+.+.+.+.+ -....++. ....+...+.++.+++.|+.+..+..-...-+++.+.+.++.+...| +..+.+
T Consensus 91 ~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g--a~~i~l--- 165 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG--ADRINL--- 165 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC--CcEEEE---
Confidence 99999888873 33333332 23567778888899999988776666555667888899998888776 444433
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecCCc-ccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLSAG-RVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~~g-~~~~~~~~~~~~~~~Gan~~ 266 (320)
++|- ....+.++..++...+..+|+ ..+.+-+- -.++--.....++.+||+.+
T Consensus 166 ---~DTv----G~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 166 ---PDTV----GVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred ---CCCc----CccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 3442 345677888888888877774 33322110 01111123467899999987
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.13 Score=43.42 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCH--HHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEK--HQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~--e~l~~L~~aGld~ 131 (320)
.++++.++.++.+ +.|++-+-++. ++..+.=.+.++.+++. +..+....-.++. ..++.+.++|.|.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~--------~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGT--------PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 6789999999887 77887666642 22223334555565532 3333222222232 2689999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++.+ ....+.++.+++.|+++.+.++ +..+ ..+.+..+.+++ ++.+.++ ||
T Consensus 80 i~vh~~~~~------------~~~~~~i~~~~~~g~~~~~~~~-~~~t----~~~~~~~~~~~g--~d~v~~~-----pg 135 (206)
T TIGR03128 80 VTVLGVADD------------ATIKGAVKAAKKHGKEVQVDLI-NVKD----KVKRAKELKELG--ADYIGVH-----TG 135 (206)
T ss_pred EEEeccCCH------------HHHHHHHHHHHHcCCEEEEEec-CCCC----hHHHHHHHHHcC--CCEEEEc-----CC
Confidence 987654421 2335667788888987654321 1222 223333335556 6666552 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
+.-....+...+. +...+..++...+.+.+ ++..+.-...+.+|++.+..|..+.. ..++.+.++.+++
T Consensus 136 ~~~~~~~~~~~~~----i~~l~~~~~~~~i~v~G---GI~~~n~~~~~~~Ga~~v~vGsai~~--~~d~~~~~~~l~~ 204 (206)
T TIGR03128 136 LDEQAKGQNPFED----LQTILKLVKEARVAVAG---GINLDTIPDVIKLGPDIVIVGGAITK--AADPAEAARQIRK 204 (206)
T ss_pred cCcccCCCCCHHH----HHHHHHhcCCCcEEEEC---CcCHHHHHHHHHcCCCEEEEeehhcC--CCCHHHHHHHHHh
Confidence 3211222222222 33333444443343333 23333345667899999988764432 2346666665543
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.13 Score=43.41 Aligned_cols=181 Identities=14% Similarity=0.157 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l-~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++..+.++++.+.+.|++-+++ +..++..-. -+.=+.+++.++...+.-+ ..++.+ .+..++.+.++|.|.|
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFVPN-iTfGp~~v~~l~~~t~~p~DvHLMV~~---p~~~i~~fa~agad~I 88 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFVPN-ITFGPPVVKALRKITDLPLDVHLMVEN---PDRYIEAFAKAGADII 88 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC-cccCHHHHHHHhhcCCCceEEEEecCC---HHHHHHHHHHhCCCEE
Confidence 35567778888888899998877 332222110 1122566666666433322 233332 3778999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHH-HHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEED-RVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed-~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
++..|..+. ..++++..++.|.+.++ .+- .+|+-+ +...+.. ++.|-++.-.| |
T Consensus 89 t~H~E~~~~-------------~~r~i~~Ik~~G~kaGv--~ln-P~Tp~~~i~~~l~~-------vD~VllMsVnP--G 143 (220)
T COG0036 89 TFHAEATEH-------------IHRTIQLIKELGVKAGL--VLN-PATPLEALEPVLDD-------VDLVLLMSVNP--G 143 (220)
T ss_pred EEEeccCcC-------------HHHHHHHHHHcCCeEEE--EEC-CCCCHHHHHHHHhh-------CCEEEEEeECC--C
Confidence 998874221 24667788888876543 332 234333 3333322 46777877766 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.. .+.. ..+.+..++.+|.+.+. ..|.+.+ ++..+....+..+|||.++.|..+
T Consensus 144 fg--GQ~F--i~~~l~Ki~~lr~~~~~~~~~~IeVDG---GI~~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 144 FG--GQKF--IPEVLEKIRELRAMIDERLDILIEVDG---GINLETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred Cc--cccc--CHHHHHHHHHHHHHhcccCCeEEEEeC---CcCHHHHHHHHHcCCCEEEEEEEE
Confidence 22 1111 23345666667777763 3445543 344455566778999999988743
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=42.49 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE-ecccC----CCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHHHh
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM-GAAWR----DTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l-~~g~~----~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~~a 127 (320)
++..+.+++.++...|++-+++ +..++ .|.| +-+.+.++.-... +...++. -.++.+..+.++
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G-----~pvV~slR~~~~~~~ffD~HmMV~---~Peq~V~~~a~a 86 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFG-----PPVVESLRKHTGADPFFDVHMMVE---NPEQWVDQMAKA 86 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccc-----hHHHHHHHhccCCCcceeEEEeec---CHHHHHHHHHhc
Confidence 4567778888888899988776 22212 2223 3455555543211 2223332 236779999999
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
|.+.+.+..|..+ + +.+.++.+++.|+++++.+= .|-..+++...+.. ++.+-++..-
T Consensus 87 gas~~tfH~E~~q----------~---~~~lv~~ir~~Gmk~G~alk--PgT~Ve~~~~~~~~-------~D~vLvMtVe 144 (224)
T KOG3111|consen 87 GASLFTFHYEATQ----------K---PAELVEKIREKGMKVGLALK--PGTPVEDLEPLAEH-------VDMVLVMTVE 144 (224)
T ss_pred CcceEEEEEeecc----------C---HHHHHHHHHHcCCeeeEEeC--CCCcHHHHHHhhcc-------ccEEEEEEec
Confidence 9999998776641 1 35677888999988765433 35455555554431 4566666655
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
| |. ..+.. .++....+...|.-+|+..|.+.+| +.+..-..+..+|||.++.|..+... .++.+.++.|
T Consensus 145 P--GF--GGQkF--me~mm~KV~~lR~kyp~l~ievDGG---v~~~ti~~~a~AGAN~iVaGsavf~a--~d~~~vi~~l 213 (224)
T KOG3111|consen 145 P--GF--GGQKF--MEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGA--ADPSDVISLL 213 (224)
T ss_pred C--CC--chhhh--HHHHHHHHHHHHHhCCCceEEecCC---cCcchHHHHHHcCCCEEEecceeecC--CCHHHHHHHH
Confidence 5 32 22111 4556677778888889888887754 33444456778999999999766643 4567777777
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 214 r~ 215 (224)
T KOG3111|consen 214 RN 215 (224)
T ss_pred HH
Confidence 65
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.3 Score=47.82 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-----CCchhHHHHHHHHHHhhhcCceEEE----eCCC--CC----HHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----GRKTNFNQILEYVKDIRDMGMEVCC----TLGM--LE----KHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----ge~~~~~~l~~~i~~~k~~~~~i~~----~~g~--l~----~e~ 120 (320)
++.++++..+..+.+.|+..+-+.||-+... .| ..++++..+-+.+++..+.... -.|. .. +..
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~e-dpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKE-DPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCC-CHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 7899999999999999999998876543211 11 1233333333334443444333 1233 22 336
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 198 (320)
++..++.|+|.+.+.- . -.+.+....+++.+++.|..+...+.+ ....|.+.+.+.++.+.++| +
T Consensus 102 v~~a~~~Gidv~Rifd--------~---lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G--a 168 (596)
T PRK14042 102 VKLAVNNGVDVFRVFD--------A---LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG--C 168 (596)
T ss_pred HHHHHHcCCCEEEEcc--------c---CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC--C
Confidence 6667888998877631 1 235556677899999999886655433 33679999999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~ 275 (320)
+.|.+ ++|. ....+.+..+++...+..++ ..+.+-+ ...++.......++.+||+.+-..- ++- .+
T Consensus 169 d~I~I------kDta----G~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~t 237 (596)
T PRK14042 169 DSIAI------KDMA----GLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGA 237 (596)
T ss_pred CEEEe------CCcc----cCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCC
Confidence 55443 2321 23567777788877776554 2222210 0112222233567899999872210 011 13
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+.++.++++.+++..|+..
T Consensus 238 Gn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 238 SHPPTEALVAALTDTPYDT 256 (596)
T ss_pred CcHhHHHHHHHHHhcCCCC
Confidence 4567888888888888754
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.2 Score=42.76 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHh-hhcCce--EEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDI-RDMGME--VCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~-k~~~~~--i~~~~g~l~~e~l~~L~~aGld 130 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+.+++.++.. .+..+. +++.+ .+..++.+.++|.|
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn--~tfg~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN--LTFGAPICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCc--cccCHHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 35667888888888899988876 33221110 01114555555544 122222 33332 46778999999999
Q ss_pred eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 131 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 131 ~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
.+.+..|+.+ ...+.++..++.|++. ++.+..+-..+.+...+. . ++.+-++...|
T Consensus 84 ~i~~H~Ea~~-------------~~~~~l~~ik~~g~k~--GlalnP~Tp~~~i~~~l~---~----~D~vlvMtV~P-- 139 (220)
T PRK08883 84 MITFHVEASE-------------HVDRTLQLIKEHGCQA--GVVLNPATPLHHLEYIMD---K----VDLILLMSVNP-- 139 (220)
T ss_pred EEEEcccCcc-------------cHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHHH---h----CCeEEEEEecC--
Confidence 9999888631 1346677888888765 444433434444444443 2 45666776655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHH
Q 020848 211 GTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 211 gt~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
|+.-+..-+... ..+..+|.+.+. ..+.+.+ ++..+.-.....+||+.++.|..+.. ..++.+.++.
T Consensus 140 GfgGq~fi~~~l----ekI~~l~~~~~~~~~~~~I~vdG---GI~~eni~~l~~aGAd~vVvGSaIf~--~~d~~~~i~~ 210 (220)
T PRK08883 140 GFGGQSFIPHTL----DKLRAVRKMIDESGRDIRLEIDG---GVKVDNIREIAEAGADMFVAGSAIFG--QPDYKAVIDE 210 (220)
T ss_pred CCCCceecHhHH----HHHHHHHHHHHhcCCCeeEEEEC---CCCHHHHHHHHHcCCCEEEEeHHHhC--CCCHHHHHHH
Confidence 543222222222 233334444332 2233322 34444445677899999988864432 2245555554
Q ss_pred HHH
Q 020848 287 FKV 289 (320)
Q Consensus 287 i~~ 289 (320)
+++
T Consensus 211 l~~ 213 (220)
T PRK08883 211 MRA 213 (220)
T ss_pred HHH
Confidence 443
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.36 Score=41.37 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
++-.+.++++.+.. |++.+++ -.|..-+. -..=..+++.++...+. ++.+++.+ .+..++.+.++|.|.|
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN--~tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~i 86 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVPN--LTLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFI 86 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCCC--cccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 44567777777766 8888776 33321110 01113455555543222 23334443 4678999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+.. ....+.++.+++.|++. ++.+..+-..+.+...+.. ++.|-++.-.| |.
T Consensus 87 t~H~Ea~~------------~~~~~~i~~Ik~~G~ka--GlalnP~T~~~~l~~~l~~-------vD~VLvMsV~P--Gf 143 (229)
T PRK09722 87 TLHPETIN------------GQAFRLIDEIRRAGMKV--GLVLNPETPVESIKYYIHL-------LDKITVMTVDP--GF 143 (229)
T ss_pred EECccCCc------------chHHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHh-------cCEEEEEEEcC--CC
Confidence 99888641 11246678888889765 4444444444555544432 35666776655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCc-cccCCCCChhHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK-LLTTPNNDFDADQLMF 287 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~-~~~~~~~~~~~~~~~i 287 (320)
.-+ + . ..+.+..++.+|.+.+. ..|.+.+ ++..+.-.....+|||.++.|.. +.. ...+..+.++.+
T Consensus 144 ~GQ--~-f-i~~~l~KI~~lr~~~~~~~~~~~IeVDG---GI~~~~i~~~~~aGad~~V~Gss~iF~-~~~d~~~~i~~l 215 (229)
T PRK09722 144 AGQ--P-F-IPEMLDKIAELKALRERNGLEYLIEVDG---SCNQKTYEKLMEAGADVFIVGTSGLFN-LDEDIDEAWDIM 215 (229)
T ss_pred cch--h-c-cHHHHHHHHHHHHHHHhcCCCeEEEEEC---CCCHHHHHHHHHcCCCEEEEChHHHcC-CCCCHHHHHHHH
Confidence 311 1 1 22334445555555443 2344443 33444445678899999988842 322 122355555555
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 216 ~~ 217 (229)
T PRK09722 216 TA 217 (229)
T ss_pred HH
Confidence 44
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.4 Score=43.66 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=126.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c---C-ceEEEeCCCCCHHHHHHHHHhc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---G-MEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~---~-~~i~~~~g~l~~e~l~~L~~aG 128 (320)
..++.|+-++.++.+.+.|++.|-++. +..+ |..++.+-.+.+.++. . + +...+..+....+.++.-.+++
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~S-p~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al 178 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGF---PIAS-PDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAV 178 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCC-ccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHh
Confidence 338999999999999999999998753 1112 3334443333333221 1 1 1222233444566777766663
Q ss_pred c----CeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCe
Q 020848 129 L----TAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 129 l----d~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 200 (320)
. .+|.+.+-+.+ -...+++.. ...+...+.++.+++.|.. +..+.-.+..-+.+.+.+.++.+.+.| ++.
T Consensus 179 ~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG--a~~ 256 (632)
T PLN02321 179 KHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG--ATT 256 (632)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC--CCE
Confidence 2 25666665553 223333322 2455566778888888874 555554444446777888999999888 554
Q ss_pred eeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--C-cccccChhHHHHHHHcCCceE---eeCCccc
Q 020848 201 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--A-GRVRFSMPEQALCFLAGANSI---FTGEKLL 273 (320)
Q Consensus 201 v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~ 273 (320)
+.+ ++|- ....+.++.+++...+..+|.. .+.++ + .-.++--.....++.+||..+ +.|-+ .
T Consensus 257 I~L------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlG-E 325 (632)
T PLN02321 257 LNI------PDTV----GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIG-E 325 (632)
T ss_pred EEe------cccc----cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-c
Confidence 433 3442 2345778888888877776642 12221 1 001111122356889999987 33321 2
Q ss_pred cCCCCChhHHHHHHHHcC
Q 020848 274 TTPNNDFDADQLMFKVLG 291 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G 291 (320)
.++..+.++++-+++..|
T Consensus 326 RaGNa~LEevv~~L~~~~ 343 (632)
T PLN02321 326 RAGNASLEEVVMAIKCRG 343 (632)
T ss_pred cccCccHHHHHHHHHhcc
Confidence 355667777777776643
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.049 Score=45.81 Aligned_cols=178 Identities=18% Similarity=0.188 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCce--EEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
++-.+.++++.+.+.|++.+++ -.|..-+. -..-.++++.++...+..+. +++.+ ....++.++++|.+.+
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn--~~~g~~~i~~i~~~~~~~~DvHLMv~~---P~~~i~~~~~~g~~~i 84 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN--LTFGPDIIKAIRKITDLPLDVHLMVEN---PERYIEEFAEAGADYI 84 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS--B-B-HHHHHHHHTTSSSEEEEEEESSS---GGGHHHHHHHHT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCc--ccCCHHHHHHHhhcCCCcEEEEeeecc---HHHHHHHHHhcCCCEE
Confidence 3446677778888899998876 33322111 11224555555544322222 33332 3568999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+. ... .+.++.+++.|+++++. +..+...+.+. .++. . ++.|-++.-.| |.
T Consensus 85 ~~H~E~~----------~~~---~~~i~~ik~~g~k~Gia--lnP~T~~~~~~---~~l~-~---vD~VlvMsV~P--G~ 140 (201)
T PF00834_consen 85 TFHAEAT----------EDP---KETIKYIKEAGIKAGIA--LNPETPVEELE---PYLD-Q---VDMVLVMSVEP--GF 140 (201)
T ss_dssp EEEGGGT----------TTH---HHHHHHHHHTTSEEEEE--E-TTS-GGGGT---TTGC-C---SSEEEEESS-T--TT
T ss_pred EEcccch----------hCH---HHHHHHHHHhCCCEEEE--EECCCCchHHH---HHhh-h---cCEEEEEEecC--CC
Confidence 9988753 122 45667788888776544 32332322222 1222 2 56777777655 53
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
.-+. =.++.++.++.+|.+.+. ..+.+.+| +..+.......+|||.++.|.
T Consensus 141 ~Gq~----f~~~~~~KI~~l~~~~~~~~~~~~I~vDGG---I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 141 GGQK----FIPEVLEKIRELRKLIPENGLDFEIEVDGG---INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp SSB------HGGHHHHHHHHHHHHHHHTCGSEEEEESS---ESTTTHHHHHHHT--EEEESH
T ss_pred Cccc----ccHHHHHHHHHHHHHHHhcCCceEEEEECC---CCHHHHHHHHHcCCCEEEECH
Confidence 3211 123345555555555443 44555443 233334567789999998885
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.5 Score=41.89 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.+++++++.+..+.+.|+.-|-+++-.+-++.++ ..++++...|+.+++ .++.+ +......+.+++-.++|++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~I--SIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWI--SVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEECCCHHHHHHHHHcCCC
Confidence 6899999999999999998888876443333222 245567778888773 35543 3345667777777777877
Q ss_pred eec-c-CccccHHHHh---hh-------C-C--C------CCH--------HHHHHHHHHHHHcCC---eeeeeEEEEeC
Q 020848 131 AYN-H-NLDTSREFYS---KI-------I-T--T------RSY--------DERLETLKHVREAGI---NVCSGGIIGLG 178 (320)
Q Consensus 131 ~v~-i-~let~~~~~~---~i-------~-~--~------~~~--------~~~l~~i~~a~~~Gi---~v~~~~i~Glg 178 (320)
.|+ + ++.. ++.++ .. + + + ..| +...+.++.+.+.|+ ++-++--+|++
T Consensus 113 iINDI~g~~d-~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~ 191 (282)
T PRK11613 113 IINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFG 191 (282)
T ss_pred EEEECCCCCC-HHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcC
Confidence 663 1 2211 11111 11 0 0 0 011 233455666777888 46666666777
Q ss_pred CCHHHHHHHHHHHhc
Q 020848 179 EAEEDRVGLLHTLAT 193 (320)
Q Consensus 179 et~ed~~~~l~~l~~ 193 (320)
.+.++-.++++.+..
T Consensus 192 k~~~~n~~ll~~l~~ 206 (282)
T PRK11613 192 KNLSHNYQLLARLAE 206 (282)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777665555554433
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.8 Score=46.17 Aligned_cols=215 Identities=9% Similarity=0.023 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEe----------CCCCCH
Q 020848 55 LMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCT----------LGMLEK 118 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~----------~g~l~~ 118 (320)
.++.++.+..+..+.+. |+..+-..||-+....-+ ..++.+-.+-+.+.+..+..+.. ++....
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~ 630 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVR 630 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHH
Confidence 37899999999999998 999988876532211101 12333333333333333333222 112345
Q ss_pred HHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE------e--CCCHHHHHHHHHH
Q 020848 119 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLHT 190 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G------l--get~ed~~~~l~~ 190 (320)
+.++...++|+|.+.+.. +. .+.+....+++.+++.|......+.+- . ..+.+-+.+.++.
T Consensus 631 ~~i~~a~~~Gid~~rifd-~l----------nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~ 699 (1146)
T PRK12999 631 AFVREAAAAGIDVFRIFD-SL----------NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKE 699 (1146)
T ss_pred HHHHHHHHcCCCEEEEec-cC----------ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 568888999999988862 22 224446778888888886544443331 1 1477778888888
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
+.++| ++.+.+ ++|. ....+.+..+++...|..++ ..+.+-+ ...++....-..++.+||+.+-..
T Consensus 700 l~~~G--a~~i~i------kDt~----G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a 766 (1146)
T PRK12999 700 LEKAG--AHILAI------KDMA----GLLKPAAAYELVSALKEEVD-LPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 766 (1146)
T ss_pred HHHcC--CCEEEE------CCcc----CCCCHHHHHHHHHHHHHHcC-CeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence 99888 554443 2321 23567778888887776552 2222211 001222223356889999987221
Q ss_pred -Cccc-cCCCCChhHHHHHHHHcCCC
Q 020848 270 -EKLL-TTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 270 -~~~~-~~~~~~~~~~~~~i~~~G~~ 293 (320)
.++- .++.++.++++.+++..|+.
T Consensus 767 v~glg~~tgn~~le~vv~~L~~~~~~ 792 (1146)
T PRK12999 767 VASMSGLTSQPSLNSIVAALEGTERD 792 (1146)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCCC
Confidence 0011 24556788888888877664
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.9 Score=41.75 Aligned_cols=215 Identities=12% Similarity=0.115 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----CceEE----EeCCC--CCHHH----H
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVC----CTLGM--LEKHQ----A 121 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~~~i~----~~~g~--l~~e~----l 121 (320)
+..|+++-.++.+.+.|+.++-+-||-+...--..+-++=++.++++|+. .+... -..|. -.++. +
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 67899999999999999988877554221100001123344555555531 22211 11232 23444 4
Q ss_pred HHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCCC
Q 020848 122 IELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 122 ~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~ 199 (320)
+.-.+.|+|.+.+ |+.++ +......+++.+++.|.++...+.+-. -.|.+-+.++++.+.+++ ++
T Consensus 105 ~ka~~nGidvfRi--------FDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g--~D 171 (472)
T COG5016 105 EKAAENGIDVFRI--------FDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG--VD 171 (472)
T ss_pred HHHHhcCCcEEEe--------chhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC--CC
Confidence 4445567776655 44443 333346777888888988665555544 579999999999999998 77
Q ss_pred eeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cCC
Q 020848 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TTP 276 (320)
Q Consensus 200 ~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~~ 276 (320)
+|.|-- ++ ...++.+.+.++...+..++- .+.+-+ ...++-.-....++.+|++.+-+-. .+. .+.
T Consensus 172 SIciKD--------ma--GlltP~~ayelVk~iK~~~~~-pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gts 240 (472)
T COG5016 172 SICIKD--------MA--GLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTS 240 (472)
T ss_pred EEEeec--------cc--ccCChHHHHHHHHHHHHhcCC-eeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCC
Confidence 776632 11 235677778888888877772 222211 1122322333567889998773221 011 123
Q ss_pred CCChhHHHHHHHHcCCCc
Q 020848 277 NNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 277 ~~~~~~~~~~i~~~G~~p 294 (320)
.+..+-++..++..||..
T Consensus 241 qP~tEtmv~aL~gt~yDt 258 (472)
T COG5016 241 QPATETMVAALRGTGYDT 258 (472)
T ss_pred CCcHHHHHHHhcCCCCCc
Confidence 345566666666655544
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.79 Score=40.15 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----chhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge----~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
.++.+++++.+....+.|+.-|-+++....++.. ...++++..+++.+++. ++++ +......+.+++-.++|.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHHHHHHHHhCC
Confidence 3789999999999999999888887533222221 23455677777777743 5544 334566777777777787
Q ss_pred Ceec
Q 020848 130 TAYN 133 (320)
Q Consensus 130 d~v~ 133 (320)
+.|+
T Consensus 98 ~iIN 101 (257)
T cd00739 98 DIIN 101 (257)
T ss_pred CEEE
Confidence 7665
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.4 Score=38.48 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=112.3
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 140 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~ 140 (320)
++.++.+.+.|++.+++..-.... .....-+++++.+. ..++++....|..+.+.++++.++|++.+.++-...
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~----~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~- 107 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASS----EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV- 107 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccc----ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh-
Confidence 334455566899999986532221 12233455666665 357888899999999999999999999998875443
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-------------EEEe--CCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 141 EFYSKIITTRSYDERLETLKHVREAGINVCSGG-------------IIGL--GEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 141 ~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-------------i~Gl--get~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
.+++...+..+..-...+-+.+++ .+-. ..+..+..+.++.+.+.| ++.+-+..
T Consensus 108 ---------~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G--~~~iivt~ 176 (254)
T TIGR00735 108 ---------KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG--AGEILLTS 176 (254)
T ss_pred ---------hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC--CCEEEEeC
Confidence 112211221222110012222321 1111 123456778888888887 66666654
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcC-CceEeeCCccccCCCCChhHHH
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~G-an~~~~~~~~~~~~~~~~~~~~ 284 (320)
... .|+ .+.++.+. ++. .+...+- .+-.++|-.+ .+.-...+..| ++.++.|. .+..+..++++..
T Consensus 177 i~~-~g~----~~g~~~~~-~~~---i~~~~~i-pvia~GGi~s--~~di~~~~~~g~~dgv~~g~-a~~~~~~~~~~~~ 243 (254)
T TIGR00735 177 MDK-DGT----KSGYDLEL-TKA---VSEAVKI-PVIASGGAGK--PEHFYEAFTKGKADAALAAS-VFHYREITIGEVK 243 (254)
T ss_pred cCc-ccC----CCCCCHHH-HHH---HHHhCCC-CEEEeCCCCC--HHHHHHHHHcCCcceeeEhH-HHhCCCCCHHHHH
Confidence 322 343 12233322 222 2222222 2222332222 22223455556 88888886 4444567899999
Q ss_pred HHHHHcCCCc
Q 020848 285 LMFKVLGLTP 294 (320)
Q Consensus 285 ~~i~~~G~~p 294 (320)
+.+++.|+.+
T Consensus 244 ~~~~~~gi~~ 253 (254)
T TIGR00735 244 EYLAERGIPV 253 (254)
T ss_pred HHHHHCCCcc
Confidence 9999999864
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.3 Score=38.01 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhH-HHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNF-NQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~-~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~ 131 (320)
.++-.+.++++.+.+.|++.+++ -.|...+. ..+ ..+++.++... ..+.+.+..-. -....++.+.++|+|.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn---~~~G~~~v~~lr~~~-~~~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN---LSFGPPVVKSLRKHL-PNTFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---cCcCHHHHHHHHhcC-CCCCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 45667888888888999988876 33221111 111 23333333321 02222222111 2456788999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++.+ ....++++.+++.|..+++.+. .....+++...+ . .+ .++.|-+.... ||
T Consensus 92 itvH~ea~~------------~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l---~-~~-~vD~Vl~m~v~--pG 150 (228)
T PTZ00170 92 FTFHIEATE------------DDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLI---D-TD-LVDMVLVMTVE--PG 150 (228)
T ss_pred EEEeccCCc------------hHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHH---c-cc-hhhhHHhhhcc--cC
Confidence 998776531 1135677788888876654433 233444544332 1 11 13344443333 34
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
..-.. .. ...+..+...|...+...+.+.+| +....-.....+|++.++.|. .++. ..++.+.++.+++
T Consensus 151 ~~gq~---~~-~~~~~ki~~~~~~~~~~~I~VdGG---I~~~ti~~~~~aGad~iVvGs-aI~~-a~d~~~~~~~i~~ 219 (228)
T PTZ00170 151 FGGQS---FM-HDMMPKVRELRKRYPHLNIQVDGG---INLETIDIAADAGANVIVAGS-SIFK-AKDRKQAIELLRE 219 (228)
T ss_pred CCCcE---ec-HHHHHHHHHHHHhcccCeEEECCC---CCHHHHHHHHHcCCCEEEEch-HHhC-CCCHHHHHHHHHH
Confidence 33111 11 222333444555666555555543 344444567789999999886 3443 2346666665554
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.6 Score=37.79 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+++..-+..-.+.+. -.++++.++ ..++++....|..+.+.++.+.+.|++.+.++-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~----~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~ 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET----MLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc----cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh
Confidence 4444555566789999888643221111122 345555665 35688889999999999999999999988776422
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE--------e----CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG--------L----GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G--------l----get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
. .+++...+..+.+.+..+.+.+++-.+ . .++..+..+.++.+.+.| ++.+-+...
T Consensus 104 ~----------~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G--~d~i~v~~i 171 (243)
T cd04731 104 V----------ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSM 171 (243)
T ss_pred h----------hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC--CCEEEEecc
Confidence 2 123333333333322223333332211 1 234456677778888887 666666654
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHc-CCceEeeCCccccCCCCChhHHHH
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA-GANSIFTGEKLLTTPNNDFDADQL 285 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~-Gan~~~~~~~~~~~~~~~~~~~~~ 285 (320)
.. .||. +....+ +++.+ +...+-+ +-.++|-.+ ++.-...+.. |++.++.|. .+..+..+.++..+
T Consensus 172 ~~-~g~~----~g~~~~-~i~~i---~~~~~~p-via~GGi~~--~~di~~~l~~~g~dgv~vg~-al~~~~~~~~~~~~ 238 (243)
T cd04731 172 DR-DGTK----KGYDLE-LIRAV---SSAVNIP-VIASGGAGK--PEHFVEAFEEGGADAALAAS-IFHFGEYTIAELKE 238 (243)
T ss_pred CC-CCCC----CCCCHH-HHHHH---HhhCCCC-EEEeCCCCC--HHHHHHHHHhCCCCEEEEeH-HHHcCCCCHHHHHH
Confidence 32 2332 122222 22222 2222222 222222111 2222334554 899998886 33344456777666
Q ss_pred HHHH
Q 020848 286 MFKV 289 (320)
Q Consensus 286 ~i~~ 289 (320)
.+++
T Consensus 239 ~~~~ 242 (243)
T cd04731 239 YLAE 242 (243)
T ss_pred HHhh
Confidence 6554
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.5 Score=37.29 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.+.+++.+.++.+.+.|++.+.+.+-.....| -.+.++.+++ .++++..-.+..+.+.++.+.++|.|.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g-------~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQG-------SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCC-------CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 45567778888888899999988643222222 2234444442 366766555667888999999999999988
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
+.... +.+...+.++.+...|+.+ ++.. .+++++. .+.+++ ++.+.+. +..++.+
T Consensus 101 ~~~~~-----------~~~~~~~~~~~~~~~g~~~----~v~v-~~~~e~~----~~~~~g--~~~i~~t---~~~~~~~ 155 (217)
T cd00331 101 IVAAL-----------DDEQLKELYELARELGMEV----LVEV-HDEEELE----RALALG--AKIIGIN---NRDLKTF 155 (217)
T ss_pred eeccC-----------CHHHHHHHHHHHHHcCCeE----EEEE-CCHHHHH----HHHHcC--CCEEEEe---CCCcccc
Confidence 65332 1233445556666667665 3333 2556643 344455 5666544 3333332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 215 QDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.++.+. +...+..+| +..+-..+| .+ .++.-.....+|++.++.|..+.
T Consensus 156 ----~~~~~~----~~~l~~~~~~~~pvia~gG-I~-s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 156 ----EVDLNT----TERLAPLIPKDVILVSESG-IS-TPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred ----CcCHHH----HHHHHHhCCCCCEEEEEcC-CC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 223322 222333343 222222222 11 12333556778999998887544
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.9 Score=37.53 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 140 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~ 140 (320)
.+.++.+.+.|++.+++.+-+....+. +.-+++++.++ ..++++....|..+.+.++++.+.|++.+.++-...
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l- 107 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV- 107 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh-
Confidence 334444557899999987633211122 33455566665 457888899999999999999999999988864222
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----------EEEeC---CCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 141 EFYSKIITTRSYDERLETLKHVREAGINVCSGG----------IIGLG---EAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 141 ~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----------i~Glg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
+ +++...+..+...+..+-+.+++ +.-.+ .+..+..+.++.+.+.| ++.+.+....
T Consensus 108 ---~------~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~ii~~~i~ 176 (253)
T PRK02083 108 ---A------NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSMD 176 (253)
T ss_pred ---h------CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC--CCEEEEcCCc
Confidence 1 12222222222111112222221 11011 12224566666777776 5555444332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHH-cCCceEeeCCccccCCCCChhHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~-~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
. .||. . .++. ..+...+...+-+ +-.++|-.+. .+. ...+. .|++.++.|. .+..+.-++++..+.
T Consensus 177 ~-~g~~-~---g~d~----~~i~~~~~~~~ip-via~GGv~s~-~d~-~~~~~~~G~~gvivg~-al~~~~~~~~~~~~~ 243 (253)
T PRK02083 177 R-DGTK-N---GYDL----ELTRAVSDAVNVP-VIASGGAGNL-EHF-VEAFTEGGADAALAAS-IFHFGEITIGELKAY 243 (253)
T ss_pred C-CCCC-C---CcCH----HHHHHHHhhCCCC-EEEECCCCCH-HHH-HHHHHhCCccEEeEhH-HHHcCCCCHHHHHHH
Confidence 1 2332 1 1222 2222222233322 2223322221 222 33454 5999999887 444566789999999
Q ss_pred HHHcCCCcC
Q 020848 287 FKVLGLTPK 295 (320)
Q Consensus 287 i~~~G~~p~ 295 (320)
+++.|+.+.
T Consensus 244 ~~~~~~~~~ 252 (253)
T PRK02083 244 LAEQGIPVR 252 (253)
T ss_pred HHHCCCccc
Confidence 999998653
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=2 Score=41.27 Aligned_cols=223 Identities=12% Similarity=0.120 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c--Cce--EEEeCCC-CCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GME--VCCTLGM-LEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~--~~~--i~~~~g~-l~~e~l~~L~~aGl 129 (320)
.+++.+++.++.+.++|++.|+|-. +.| -..-..+.++++.+|+ . +++ +++++.. +.....-.-.++|+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD----taG-ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD----MAA-LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----Ccc-CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCC
Confidence 4789999999999999999999942 222 1233566777777763 3 344 3444332 33344444568899
Q ss_pred CeeccCccccHHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 130 TAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.|..++.+..+ +.+ -+.+.++..++ ..|+++++++-- +.+-.+.+.........+......+....+.+
T Consensus 227 d~vDtai~Glg~-----~aGn~atE~vv~~L~---~~g~~tgiDl~~-L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~~ 297 (499)
T PRK12330 227 DVVDTAISSMSL-----GPGHNPTESLVEMLE---GTGYTTKLDMDR-LLKIRDHFKKVRPKYKEFESKTTGVETEIFKS 297 (499)
T ss_pred CEEEeecccccc-----cccchhHHHHHHHHH---hcCCCCCCCHHH-HHHHHHHHHHHHHHHhcccccccCCCCccccC
Confidence 999888877511 112 24555555554 446554433211 11111111222222222211122223334444
Q ss_pred -cCCCCCCCC-------C-CCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEee--------CCc
Q 020848 209 -VKGTPLQDQ-------K-PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT--------GEK 271 (320)
Q Consensus 209 -~~gt~~~~~-------~-~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~--------~~~ 271 (320)
+||--+.+. . .--.+++++.+...|..+.....-...+ .+........+..|-..+++ |.
T Consensus 298 qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~~~VTP~S--qivg~qA~~nv~~gry~~~~~e~~~~~~G~- 374 (499)
T PRK12330 298 QIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPSS--QIVGTQAVFNVLMGRYKVLTGEFADLMLGY- 374 (499)
T ss_pred CCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCCCeeCChh--HHHHHHHHHHHHcCccccCCHHHHHHhCcC-
Confidence 566444322 1 1224567777777787776543222211 11122223333444222222 22
Q ss_pred cccCCCCChhHHHHHHHH-cCCCcC
Q 020848 272 LLTTPNNDFDADQLMFKV-LGLTPK 295 (320)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~-~G~~p~ 295 (320)
|-..+++-.+++++.+.+ .|-+|.
T Consensus 375 yG~~p~~~~~e~~~~~~~~~~~~~~ 399 (499)
T PRK12330 375 YGETPGERNPEVVEQAKKQAKKEPI 399 (499)
T ss_pred CCCCCCCCCHHHHHHHHhhCCCCCC
Confidence 334455566677777764 465554
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.4 Score=37.88 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 141 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~ 141 (320)
.+.++...+.|++.++++.=+--..|.+...+.+.++++ ....++.+-.|..+.+.++.|.++|++++.++--.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~---~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a--- 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE---ATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA--- 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHH---hCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce---
Confidence 444556677899999886422111244445444444444 34677888889999999999999999999987533
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCee--eeeE----EEEeCC---CHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 142 FYSKIITTRSYDERLETLKHVREAGINV--CSGG----IIGLGE---AEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 142 ~~~~i~~~~~~~~~l~~i~~a~~~Gi~v--~~~~----i~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
-.+++.+.+.+ ++.|-++ .++. +...|. +.-++.++++.+.+.| ..++ ++.-+-..||
T Consensus 108 -------v~~p~~v~~~~---~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g--~~~i-i~TdI~~DGt 174 (241)
T COG0106 108 -------VKNPDLVKELC---EEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG--LAHI-LYTDISRDGT 174 (241)
T ss_pred -------ecCHHHHHHHH---HHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC--CCeE-EEEecccccc
Confidence 23444444333 3344222 2221 111121 2235677788888876 4433 3333444566
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHc-CCceEeeCCccccCCCCChhHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA-GANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~-Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
- ..++.+-+.++.... +..+..++|-.++. +. ...-.. |+..++.|..+. .+.-++.+.++..+
T Consensus 175 l----~G~n~~l~~~l~~~~-----~ipviaSGGv~s~~-Di-~~l~~~~G~~GvIvG~ALy-~g~~~l~ea~~~~~ 239 (241)
T COG0106 175 L----SGPNVDLVKELAEAV-----DIPVIASGGVSSLD-DI-KALKELSGVEGVIVGRALY-EGKFTLEEALACVR 239 (241)
T ss_pred c----CCCCHHHHHHHHHHh-----CcCEEEecCcCCHH-HH-HHHHhcCCCcEEEEehHHh-cCCCCHHHHHHHHh
Confidence 4 234444333333322 22333454433332 22 112223 788888886433 34455666665544
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.5 Score=37.50 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHcC-----CCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
++.++=++.++.+.+.| ++.|-+.+. . +...+.+.++++...+ ...+... .....+.+++..++|++
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~-----~-~~d~~~v~~~~~~~~~-~~~v~~~-~r~~~~die~A~~~g~~ 89 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLY-----T-EKDREAVEACLDRGYK-FPEVTGW-IRANKEDLKLVKEMGLK 89 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCc-----C-hHHHHHHHHHHHcCCC-CCEEEEE-ecCCHHHHHHHHHcCcC
Confidence 48999999999999999 999876321 1 2233333333321100 1234333 44567888999999999
Q ss_pred eeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCH-H----HHHHHHHHHhcCCCCCC-e
Q 020848 131 AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGL-GEAE-E----DRVGLLHTLATLPTHPE-S 200 (320)
Q Consensus 131 ~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~-e----d~~~~l~~l~~l~~~~~-~ 200 (320)
.+.+.+-+++ -..+.+++. ...+...+.++.+++.|+.+..++ -|- ..+. + -+.++++.+.+.| ++ .
T Consensus 90 ~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~G--~~~~ 166 (279)
T cd07947 90 ETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKESG--IPVK 166 (279)
T ss_pred EEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHCC--CCEE
Confidence 9999886663 344455433 256667778888888898876554 222 1111 1 1233444444466 44 3
Q ss_pred eeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHHh--CCCceeec--CCcccccChhHHHHHHHcCCceEe---eCCc
Q 020848 201 VPINALLAVK--GTPLQDQKPVEIWEMIRMIATARIV--MPKAMVRL--SAGRVRFSMPEQALCFLAGANSIF---TGEK 271 (320)
Q Consensus 201 v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~~--~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~---~~~~ 271 (320)
+++- -.- .+|+.. ..-++++.+++...+.. +|...+.+ -.. .++.-.....++.+|+..+- .|-+
T Consensus 167 i~l~---DTvG~a~P~~~--~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~-~Gla~AN~laA~~aG~~~vd~sv~GlG 240 (279)
T cd07947 167 IRLC---DTLGYGVPYPG--ASLPRSVPKIIYGLRKDCGVPSENLEWHGHND-FYKAVANAVAAWLYGASWVNCTLLGIG 240 (279)
T ss_pred EEec---cCCCcCCcccc--ccchHHHHHHHHHHHHhcCCCCceEEEEecCC-CChHHHHHHHHHHhCCCEEEEeccccc
Confidence 3331 111 233211 12246666777766655 34322221 110 11112233568899998872 2221
Q ss_pred cccCCCCChhHHHHHHHHc-CCCc
Q 020848 272 LLTTPNNDFDADQLMFKVL-GLTP 294 (320)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~~-G~~p 294 (320)
..++....++++.+++.+ |+.+
T Consensus 241 -e~aGN~~tE~lv~~l~~~~g~~t 263 (279)
T cd07947 241 -ERTGNCPLEAMVIEYAQLKGNFD 263 (279)
T ss_pred -ccccchhHHHHHHHHHHhcCCCC
Confidence 235567888999999988 8753
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.2 Score=36.88 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+++..-+.. .|.+.. .++++++. ..++++.+-.|..+.|.++.+.++|++.+.++-..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g~~~n----~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FGRGSN----RELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CCCCcc----HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 4445666677799999998753221 232222 35555554 44688889999999999999999999998887544
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----EE--EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----II--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
. .+++.+.+.++...+. +-+.+++ +. |..++..+..+.++.+.+.| +..+-+..-.. .|+
T Consensus 108 l----------~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G--~~~iiv~~~~~-~g~ 173 (241)
T PRK14024 108 L----------ENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG--CSRYVVTDVTK-DGT 173 (241)
T ss_pred h----------CCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC--CCEEEEEeecC-CCC
Confidence 3 1222222333333221 2122221 11 22233445677777788887 66666654432 233
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHH-HHH-HcCCceEeeCCccccCCCCChhHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA-LCF-LAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~-~~~-~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
- ..++.+.+.++. ...+ ..+-.++|-.+. .+... ..+ ..|++.++.|..++ .+.-+.++..+.
T Consensus 174 ~----~G~d~~~i~~i~----~~~~-ipviasGGi~s~-~D~~~l~~~~~~GvdgV~igra~~-~g~~~~~~~~~~ 238 (241)
T PRK14024 174 L----TGPNLELLREVC----ARTD-APVVASGGVSSL-DDLRALAELVPLGVEGAIVGKALY-AGAFTLPEALAV 238 (241)
T ss_pred c----cCCCHHHHHHHH----hhCC-CCEEEeCCCCCH-HHHHHHhhhccCCccEEEEeHHHH-cCCCCHHHHHHH
Confidence 2 223333322222 2222 122223322222 12111 111 35999998886333 344556665444
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.7 Score=38.23 Aligned_cols=191 Identities=15% Similarity=0.115 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCH-HH-HHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEK-HQ-AIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~-e~-l~~L~~aGld~ 131 (320)
.+.++.++.++.+...++.-+-++. |+....=.+.++.+++.+ ..+.+..-..+. .. ++.+.++|.|.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~--------~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGT--------PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECH--------HHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 4677777776665443332233321 333322256666766543 334433333222 22 67788889998
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++. .+...++++.+++.|+.+.++++ +. ++..+..+-+ ..+ ++.+-++.-+.. +
T Consensus 254 vTVH~ea~------------~~ti~~ai~~akk~GikvgVD~l-np-~tp~e~i~~l----~~~--vD~Vllht~vdp-~ 312 (391)
T PRK13307 254 VVISGLAP------------ISTIEKAIHEAQKTGIYSILDML-NV-EDPVKLLESL----KVK--PDVVELHRGIDE-E 312 (391)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEEc-CC-CCHHHHHHHh----hCC--CCEEEEccccCC-C
Confidence 88865443 23346678889999977655433 22 3443333322 233 667766652221 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
+ . .+.. +.+...|.+..+..+.+.+| +..+.-.....+|++.++.|. .++. ..++.+.++.+++
T Consensus 313 ~---~--~~~~----~kI~~ikk~~~~~~I~VdGG---I~~eti~~l~~aGADivVVGs-aIf~-a~Dp~~aak~l~~ 376 (391)
T PRK13307 313 G---T--EHAW----GNIKEIKKAGGKILVAVAGG---VRVENVEEALKAGADILVVGR-AITK-SKDVRRAAEDFLN 376 (391)
T ss_pred c---c--cchH----HHHHHHHHhCCCCcEEEECC---cCHHHHHHHHHcCCCEEEEeH-HHhC-CCCHHHHHHHHHH
Confidence 1 1 1112 23333444444444555543 333444567789999998886 3332 2345555555544
|
|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.7 Score=36.85 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
...+++++++.++...+.|+.-|-+++....++.++ ...+++...++.+++. ++++++ .....+.++.-.++|
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi--DT~~~~vi~~al~~G 95 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV--DTYRAEVARAALEAG 95 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE--eCCCHHHHHHHHHcC
Confidence 337899999999999999999988864322222211 2334577777877754 666543 345567777666677
Q ss_pred cCeec
Q 020848 129 LTAYN 133 (320)
Q Consensus 129 ld~v~ 133 (320)
.+.|+
T Consensus 96 ~~iIN 100 (257)
T TIGR01496 96 ADIIN 100 (257)
T ss_pred CCEEE
Confidence 77654
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=94.27 E-value=6 Score=38.87 Aligned_cols=230 Identities=16% Similarity=0.034 Sum_probs=124.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEE--EeCCC-CCHHHHHHHHHhc
Q 020848 53 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVC--CTLGM-LEKHQAIELKKAG 128 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~--~~~g~-l~~e~l~~L~~aG 128 (320)
...++.++=++.++.+.+.|++.|-.+- ..+ . +...+.+.++++... ..+..++ ..+-. .-+..++.+..++
T Consensus 42 g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gf--p~~-s-~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~ 117 (564)
T TIGR00970 42 PDPMSPARKRRYFDLLVRIGFKEIEVGF--PSA-S-QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAK 117 (564)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCC-C-HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCC
Confidence 3448999999999999999999997752 211 2 233333433333210 0133332 21111 1123344444445
Q ss_pred cCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe------eeeeEEEEeC----CCHHHHHHHHHHHhcCC
Q 020848 129 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN------VCSGGIIGLG----EAEEDRVGLLHTLATLP 195 (320)
Q Consensus 129 ld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~------v~~~~i~Glg----et~ed~~~~l~~l~~l~ 195 (320)
.+.|.+.+-+.+ -....++.. ...+...+.++.+++.|.. ....+.++.. -+.+-+.++++.+.+.|
T Consensus 118 ~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag 197 (564)
T TIGR00970 118 RATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVW 197 (564)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhC
Confidence 457888877773 233333322 2345555566667777653 1224445442 24567788888888886
Q ss_pred CC-CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCce-eecC--C-cccccChhHHHHHHHcCCceEe---
Q 020848 196 TH-PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-VRLS--A-GRVRFSMPEQALCFLAGANSIF--- 267 (320)
Q Consensus 196 ~~-~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~-i~~~--~-g~~~~~~~~~~~~~~~Gan~~~--- 267 (320)
.. .+..... -+|+|- ....+.++.+++..++..+|... +.++ + .-.++--.....++.+||..+-
T Consensus 198 ~~~~~~~~~i---~l~DTv----G~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~ 270 (564)
T TIGR00970 198 APTPERPIIF---NLPATV----EMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCL 270 (564)
T ss_pred CCccCCeeEE---Eecccc----CccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeec
Confidence 21 1111111 234443 34567888888887777666432 2222 0 0011111233568899999872
Q ss_pred eCCccccCCCCChhHHHHHHHHcCCCc
Q 020848 268 TGEKLLTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.|-+ ..++....++++-++...|+.+
T Consensus 271 ~G~G-ERaGNa~le~lv~~L~~~g~~t 296 (564)
T TIGR00970 271 FGNG-ERTGNVDLVTLALNLYTQGVSP 296 (564)
T ss_pred CcCC-ccccCccHHHHHHHHHhcCCCC
Confidence 2221 1356678888888888877643
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.8 Score=36.21 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccC-CCCCCc-hhHHHHHHHHHHhhhc--CceEEEeCCC---CC-HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-DTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LE-KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~-~~~ge~-~~~~~l~~~i~~~k~~--~~~i~~~~g~---l~-~e~l~~L~~a 127 (320)
.++|||.+.+....+.|..-+++-. + +..|.+ ...+.+.+.++.+++. ++.+..|.|. .+ ++.++.+...
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~--R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHA--RDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-E--E-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeec--CCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 7999999999999999998888743 3 333444 4567788888888843 6666666543 33 4455555543
Q ss_pred ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
..|..+++.-+. -. ....--.++++...+.++.+++.|++....+ + +..++.....++++ |.-...+.+. |
T Consensus 101 ~pd~asl~~gs~n~~-~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev-~----d~~~l~~~~~l~~~-G~l~~p~~~~-~ 172 (272)
T PF05853_consen 101 KPDMASLNPGSMNFG-TRDRVYINTPADARELARRMRERGIKPEIEV-F----DPGHLRNARRLIEK-GLLPGPLLVN-F 172 (272)
T ss_dssp --SEEEEE-S-EEES-GGCSEE---HHHHHHHHHHHHHTT-EEEEEE-S----SHHHHHHHHHHHHT-TSS-SSEEEE-E
T ss_pred CCCeEEecccccccc-cCCceecCCHHHHHHHHHHHHHcCCeEEEEE-E----cHHHHHHHHHHHHC-CCCCCCeEEE-E
Confidence 456665544332 11 0010113577888899999999998765442 2 45566555555443 4211222222 2
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEee-CCccccCCC-------C
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT-GEKLLTTPN-------N 278 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~-~~~~~~~~~-------~ 278 (320)
.. |.+.. .+.+++.+..++..... +..+.+.+ .....-+....++..|.+.-+. +|.+....| .
T Consensus 173 vl--G~~~g--~~~~~~~l~~~l~~l~~---~~~w~v~~-~g~~~~~~~~~Ai~~GghvRVGlED~~~~~~G~~a~sNae 244 (272)
T PF05853_consen 173 VL--GVPGG--MPATPENLLAMLDMLPE---GAPWSVCG-IGRNQWPLLAAAIAMGGHVRVGLEDNLYLPDGELAPSNAE 244 (272)
T ss_dssp EE--S-TTS----S-HHHHHHHHHHHHH---TEEEEEEE--GGGHHHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHH
T ss_pred cc--cCCCC--CCCCHHHHHHHHHhcCC---CCcEEEEc-cchhhHHHHHHHHHcCCceEEecCccccCCCCCCCcCHHH
Confidence 22 43322 25667776666555443 33332221 1111112345677778774332 232211122 2
Q ss_pred ChhHHHHHHHHcCCCcCCCC
Q 020848 279 DFDADQLMFKVLGLTPKAPS 298 (320)
Q Consensus 279 ~~~~~~~~i~~~G~~p~~~~ 298 (320)
-++..+++++++|++|...+
T Consensus 245 lV~~a~~ia~~~grevAt~~ 264 (272)
T PF05853_consen 245 LVERAVRIARELGREVATPA 264 (272)
T ss_dssp HHHHHHHHHHHTT-EB--HH
T ss_pred HHHHHHHHHHHcCCCCCCHH
Confidence 26778899999999987653
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.077 Score=48.63 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-chhHHHHHHHHHHhhhcCceEE--EeCCC-----CCHHHHHHHHHhc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVC--CTLGM-----LEKHQAIELKKAG 128 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-~~~~~~l~~~i~~~k~~~~~i~--~~~g~-----l~~e~l~~L~~aG 128 (320)
+.++..+.++.+.+.|+++++.+- +.+.+. ....+.+-++++.+++.++++. +++.. .+.+.++.|++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL--~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL--HIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC--CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 578999999999999998876532 222222 2567888899999999998854 44432 2455688999999
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
++.+.++
T Consensus 90 i~~lRlD 96 (357)
T PF05913_consen 90 IDGLRLD 96 (357)
T ss_dssp -SEEEES
T ss_pred CCEEEEC
Confidence 9988875
|
The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=3.6 Score=35.17 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCC-CC---HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGM-LE---KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~-l~---~e~l~~L~~a 127 (320)
.+.++|.+.++.+.+.++..+|+. |.+.+...+.+ +..++.+.+- .|. .+ ....++..+.
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~---------p~~v~~a~~~l---~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~ 86 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVN---------PSYVKLAAELL---KGSDVKVCTVIGFPLGANTTAVKAFEAKDAIAN 86 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC---------HHHHHHHHHHh---CCCCCeEEEEecccCCCChHHHHHHHHHHHHHc
Confidence 789999999999999999999873 33444433333 3344554322 232 12 3344555567
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.+.+.+-++-. .+ ...+|+.+.+-++.+++.--...+-+|+-. --+++++.+..+.+.+.| ++.|.-
T Consensus 87 GA~EiD~Vin~~-----~~-~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag--adfIKT--- 155 (221)
T PRK00507 87 GADEIDMVINIG-----AL-KSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAG--ADFVKT--- 155 (221)
T ss_pred CCceEeeeccHH-----Hh-cCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhC--CCEEEc---
Confidence 888777654321 11 134688888888887774212344555544 347788999999999888 553332
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
+|-+. ....+.+....+.... -+...+..++|-.+. +.....+.+||+.+
T Consensus 156 ----sTG~~-~~gat~~~v~~m~~~~---~~~~~IKasGGIrt~--~~a~~~i~aGA~ri 205 (221)
T PRK00507 156 ----STGFS-TGGATVEDVKLMRETV---GPRVGVKASGGIRTL--EDALAMIEAGATRL 205 (221)
T ss_pred ----CCCCC-CCCCCHHHHHHHHHHh---CCCceEEeeCCcCCH--HHHHHHHHcCcceE
Confidence 33332 1234555433332222 233455555543332 33456678999988
|
|
| >COG3589 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=4.8 Score=36.23 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEE--EeCCC-----CCHHHHHHHHHhcc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC--CTLGM-----LEKHQAIELKKAGL 129 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~--~~~g~-----l~~e~l~~L~~aGl 129 (320)
+.++-.+.++.+.+.|+++|+-+-. .+.......+..+.++++.+++.|+.+. +++.. .+...+..+.+.|+
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~-~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLL-IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecc-cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 3466777888999999998865321 1111112477889999999999998854 44443 36678999999999
Q ss_pred CeeccCcccc
Q 020848 130 TAYNHNLDTS 139 (320)
Q Consensus 130 d~v~i~let~ 139 (320)
+.+.++.-..
T Consensus 93 ~glRlD~gfS 102 (360)
T COG3589 93 DGLRLDYGFS 102 (360)
T ss_pred hheeecccCC
Confidence 9888765333
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=93.75 E-value=4.2 Score=35.56 Aligned_cols=75 Identities=12% Similarity=0.227 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC----CchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g----e~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.+++++++.++...+.|++-|-++++...++. .....+.+..+++.+++. ++.+ +......+.++.-.++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHHHHHHHHhCCC
Confidence 68999999999999999998888765443332 123446677778877743 5554 3344667777777777755
Q ss_pred ee
Q 020848 131 AY 132 (320)
Q Consensus 131 ~v 132 (320)
.|
T Consensus 99 iI 100 (258)
T cd00423 99 II 100 (258)
T ss_pred EE
Confidence 44
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.8 Score=35.83 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=125.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-----CceEEEeCCCCCHHHHHHHHHh
Q 020848 53 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-----~~~i~~~~g~l~~e~l~~L~~a 127 (320)
...+|.++=++.++.+.+.|++.+-++. +. .-+.-.+.++.+.+. +..+. .......+.++.-.++
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf---P~-----~~~~e~e~~~~i~~~~~~~~~~~~~-al~r~~~~die~a~~~ 87 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVGF---PS-----ASQTDFDFVRELIEEDLIPDDVTIQ-VLTQAREDLIERTFEA 87 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CC-----CCHHHHHHHHHHHHccCCCCCCEEE-EEcCCChhhHHHHHHH
Confidence 3458999999999999999999997762 22 223334555555322 23322 2222334546666666
Q ss_pred --ccC--eeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe---eeeeEEEEe----CCCHHHHHHHHHHHhc
Q 020848 128 --GLT--AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN---VCSGGIIGL----GEAEEDRVGLLHTLAT 193 (320)
Q Consensus 128 --Gld--~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~---v~~~~i~Gl----get~ed~~~~l~~l~~ 193 (320)
|++ .+.+.+-+++ -..+++++. ...+...+.++.+++.|++ ....+.++. --+.+.+.++++.+.+
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 88 LRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred hCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 5777776663 333444332 2455666777788888875 233444544 1245667777777766
Q ss_pred C-CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC----CcccccChhHHHHHHHcCCceEe
Q 020848 194 L-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS----AGRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 194 l-~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~----~g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
. +..++...-. -.++|- ...++.++.+++...+..+|.. .+.+. .. .++.-.....++.+||..+-
T Consensus 168 ~~~~g~~~~~~i---~laDTv----G~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd-~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 168 VWQPTPENKIIL---NLPATV----EVATPNVYADQIEWFCRNLSRRESVIISLHPHND-RGTGVAAAELALLAGADRVE 239 (284)
T ss_pred hhcCCCCcceEE---Eccccc----cccCHHHHHHHHHHHHHhcCCCCCceEEEEecCC-CchHHHHHHHHHHhCCCEEE
Confidence 5 1112211111 223432 2456777888888777766642 12221 10 11111223567899998872
Q ss_pred ---eCCccccCCCCChhHHHHHHHHcCCC
Q 020848 268 ---TGEKLLTTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~i~~~G~~ 293 (320)
.|-+ ..++....++++.++...|..
T Consensus 240 ~~~~g~G-eRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 240 GTLFGNG-ERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred eeCccCC-ccccchhHHHHHHHHHhcCCC
Confidence 2211 125667888999999887765
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.97 Score=38.06 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+++|++...+..+..+|.+.+++..+.-. +.+.. .++++++++ .++++.+-.|..+.+.++.+.++|.|.+-
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa--~~~v~----~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGA--SYPVN----PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCCC----HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 378999999999888899999998643211 11222 445555553 36788888899999999999999999886
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 204 VG 205 (205)
T TIGR01769 204 TG 205 (205)
T ss_pred eC
Confidence 53
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=6.2 Score=35.87 Aligned_cols=222 Identities=12% Similarity=0.026 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC-----ceEEEeCCCCCHH----HHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG-----MEVCCTLGMLEKH----QAIEL 124 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~-----~~i~~~~g~l~~e----~l~~L 124 (320)
..++++|=++.++.+.+.|++.|-.+. +..+ +.-.+.++.+.+.+ ..++.-+ ....+ .++.+
T Consensus 49 v~fs~eeKl~IA~~L~~lGVd~IEvG~---Pa~s-----~~e~e~ir~I~~~~~~~~~~~i~~~~-r~~~~dId~a~e~~ 119 (333)
T PRK14847 49 EPMDGARKLRLFEQLVAVGLKEIEVAF---PSAS-----QTDFDFVRKLIDERRIPDDVTIEALT-QSRPDLIARTFEAL 119 (333)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeC---CCCC-----HHHHHHHHHHHHhCCCCCCcEEEEEe-cCcHHHHHHHHHHh
Confidence 348999999999999999999997752 2222 22345555554332 3332222 22334 34444
Q ss_pred HHhccCeeccCccccHH-HHhhhCCCCCH----HHHHHHHHHHHHcCCe---eeeeEEEEe-CC---CHHHHHHHHHHHh
Q 020848 125 KKAGLTAYNHNLDTSRE-FYSKIITTRSY----DERLETLKHVREAGIN---VCSGGIIGL-GE---AEEDRVGLLHTLA 192 (320)
Q Consensus 125 ~~aGld~v~i~let~~~-~~~~i~~~~~~----~~~l~~i~~a~~~Gi~---v~~~~i~Gl-ge---t~ed~~~~l~~l~ 192 (320)
+.++.++|++.+-+++- ...+++ .+. +...++++.+++.|.. ....+-+|. .- ..+-+.+..+.+.
T Consensus 120 ~~~~~~~Vhi~~p~Sd~h~~~kl~--~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~ 197 (333)
T PRK14847 120 AGSPRAIVHLYNPIAPQWRRIVFG--MSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVS 197 (333)
T ss_pred CCCCCCEEEEEecCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHH
Confidence 44455669998888743 333343 344 4455677778887652 112345555 22 2344455555543
Q ss_pred cC-CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecC--C-cccccChhHHHHHHHcCCceEe
Q 020848 193 TL-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS--A-GRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 193 ~l-~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~--~-g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
+. | ++..+...+ -+++|- ...++.++...+...+.-++. ..+.++ . ...++--.....++.+||..+-
T Consensus 198 ~~~g--a~r~~a~~i-~l~DTV----G~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~ 270 (333)
T PRK14847 198 AIWG--PTPQRKMII-NLPATV----ESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIE 270 (333)
T ss_pred HHhC--CCccCCcEE-EeCCcc----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 33 4 333222222 123442 335566777777666544432 112221 0 0011112234568899999873
Q ss_pred ---eCCccccCCCCChhHHHHHHHHcCCCc
Q 020848 268 ---TGEKLLTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.|.+ ..++....++++..+...|+..
T Consensus 271 ~tv~G~G-ERaGNa~lE~v~~~L~~~g~~~ 299 (333)
T PRK14847 271 GCLFGNG-ERTGNVDLVALALNLERQGIAS 299 (333)
T ss_pred eeCCcCC-ccccchhHHHHHHHHHhcCCCC
Confidence 2221 1356677888888888877754
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.8 Score=34.43 Aligned_cols=186 Identities=17% Similarity=0.135 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+++.+-.....+.+.. .++++.++ ..++++.+..|..+.+.++++.++|+|.+.++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~----~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVN----LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCC----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 44555566667899999987422211122222 44455555 34688888889999999999999999998776433
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----EEEeC---CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----IIGLG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----i~Glg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
. .+++...+..+...+..+-+.+++ ++-.+ .+..+..+.++.+.+.| ++.+.+..... .|
T Consensus 106 l----------~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--a~~iii~~~~~-~g 172 (234)
T cd04732 106 V----------KNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG--VKAIIYTDISR-DG 172 (234)
T ss_pred H----------hChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC--CCEEEEEeecC-CC
Confidence 2 112222222222211111122221 21111 23345667777778887 66666654322 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
+. ..++.+. ++ ..+...+-+ +-..+|-.+ .+.-...+..|++.++.|..+.
T Consensus 173 ~~----~g~~~~~-i~---~i~~~~~ip-vi~~GGi~~--~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 173 TL----SGPNFEL-YK---ELAAATGIP-VIASGGVSS--LDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cc----CCCCHHH-HH---HHHHhcCCC-EEEecCCCC--HHHHHHHHHCCCCEEEEeHHHH
Confidence 32 2233322 22 222222211 222222211 1222445667999998886443
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=5 Score=38.12 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=58.5
Q ss_pred eEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHH
Q 020848 108 EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRV 185 (320)
Q Consensus 108 ~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~ 185 (320)
++.+..| +.+.++...++|.|.|.++.+.+ .+... ..-+.++..++++.+++.|.++.+.+-.-. .+..+.+.
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 3444444 46888888899999999999877 33321 234678899999999999988655432212 33444556
Q ss_pred HHHHHHhcCCCCCCeee
Q 020848 186 GLLHTLATLPTHPESVP 202 (320)
Q Consensus 186 ~~l~~l~~l~~~~~~v~ 202 (320)
+.++.+.+++ ++.+-
T Consensus 80 ~~l~~l~~~g--vDgvI 94 (443)
T PRK15452 80 RDLEPVIAMK--PDALI 94 (443)
T ss_pred HHHHHHHhCC--CCEEE
Confidence 6667777776 44433
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.3 Score=42.40 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+++.+.++.+.+.|++.+++-.. .|.+ ..+.++++.+|+. ++++..-| ..+.+..+.|.++|+|.|.+++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a----~g~~---~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA----HGHQ---VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC----CCCc---HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECC
Confidence 56677788888899999888432 2433 7788888888864 56665522 5899999999999999998776
Q ss_pred ccc-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 137 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 137 et~-~~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
-.. --..+.... .....-.++..+.+++.|+++-.+ |--.+..|+.+.+. +| .+.+-+..+
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala----~G--A~~vm~g~~ 359 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA----AG--ASNVMVGSW 359 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH----cC--CCEEeechh
Confidence 443 111112111 124566677777777776553111 11246677766654 44 445555443
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=92.70 E-value=7.7 Score=35.31 Aligned_cols=193 Identities=15% Similarity=0.093 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.++.++.++.+.+.|++.+-++... .. |.. ..-.+.+..... ... ....+.-..+.++...++|++.+.+
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~-~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~a~~~~~~~~~~ 88 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPA---AS-KQS-RIDIEIIASLGL-KAN-IVTHIRCRLDDAKVAVELGVDGIDI 88 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC-HHH-HHHHHHHHhcCC-CcE-EEEECCCCHHHHHHHHHCCcCEEEE
Confidence 3789999999999999999998776421 11 111 122333333221 111 2222334467778888889988776
Q ss_pred Ccccc-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 135 NLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 135 ~let~-~~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
..-.. ......... ....+.+...++.+++.|+.+...+.-......+++.++.+.+..++ ++.+.+. .
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g--~~~i~~~------d 160 (344)
T TIGR02146 89 FFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFG--VDRVGIA------D 160 (344)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCC--CCEEEEc------C
Confidence 54333 222333222 12345677888899999988877776655566788888888888887 5543321 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc-ccccChhHHHHHHHcCCceE
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG-RVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g-~~~~~~~~~~~~~~~Gan~~ 266 (320)
|.. ...+.++...+...+...+...+.+.+- ..++.-.....++.+|+..+
T Consensus 161 t~g----~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~ 212 (344)
T TIGR02146 161 TVG----KAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIV 212 (344)
T ss_pred CCC----cCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEE
Confidence 221 1234445555555555555432222110 01111123356778887765
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.63 E-value=6 Score=33.89 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCC--CchhHHHHHHHHHHhhhc-----CceEEEeCCCCCHHHHHHHHHhcc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g--e~~~~~~l~~~i~~~k~~-----~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
++..+.+.++.+.+.|++.+.+=- -.+ .| ....=.+.++.+++. ++.+.+++ ..+.++.+.++|.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~----~d~~f~~-~~~~g~~~~~~l~~~~~~~~~vhlmv~~---p~d~~~~~~~~ga 89 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDV----MDGHFVP-NLTIGPPVVKALRKHTDAPLDCHLMVTN---PEDYVPDFAKAGA 89 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec----ccCCcCC-ccccCHHHHHHHHhcCCCcEEEEeccCC---HHHHHHHHHHcCC
Confidence 445778888888889999988721 111 11 111001344444432 22222221 2567888899999
Q ss_pred CeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 130 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|.|.+.++.. .-+...+.++.+++.|+.+++.+ ...|..+..+ .+.+.+ .++.+.+.+..|
T Consensus 90 d~v~vH~~q~-----------~~d~~~~~~~~i~~~g~~iGls~---~~~t~~~~~~---~~~~~~-~~Dyi~~~~v~p- 150 (229)
T PLN02334 90 SIFTFHIEQA-----------STIHLHRLIQQIKSAGMKAGVVL---NPGTPVEAVE---PVVEKG-LVDMVLVMSVEP- 150 (229)
T ss_pred CEEEEeeccc-----------cchhHHHHHHHHHHCCCeEEEEE---CCCCCHHHHH---HHHhcc-CCCEEEEEEEec-
Confidence 9997655410 01223567788888887544332 1224333222 222221 156777777766
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
|+.-.. ..+ ..+..+..++...++..+.+.+ ++..+.-.....+|++.++.|..+.. ..++.+.++-++
T Consensus 151 -g~~~~~---~~~-~~~~~i~~~~~~~~~~~I~a~G---GI~~e~i~~l~~aGad~vvvgsai~~--~~d~~~~~~~l~ 219 (229)
T PLN02334 151 -GFGGQS---FIP-SMMDKVRALRKKYPELDIEVDG---GVGPSTIDKAAEAGANVIVAGSAVFG--APDYAEVISGLR 219 (229)
T ss_pred -CCCccc---cCH-HHHHHHHHHHHhCCCCcEEEeC---CCCHHHHHHHHHcCCCEEEEChHHhC--CCCHHHHHHHHH
Confidence 322111 112 2233344455554443333333 34444445677899999988864332 224444444443
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.3 Score=36.16 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|+..+.+.+. +.++..=++.+..++ ..++++....-.+++-++.+-+.+|.|.|.+-...
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe-------~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE-------PKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---------SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred CHHHHHHHHHhcCCCEEEEECC-------CCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 3344555667789999877652 334444444555555 45778777777799999999999999999887655
Q ss_pred c-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC
Q 020848 139 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 217 (320)
Q Consensus 139 ~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~ 217 (320)
. ++. ..+.++.++..|+.+ ++-. .+.+|+...+ +.+ .+.++++.-. +...
T Consensus 142 L~~~~------------l~~l~~~a~~lGle~----lVEV-h~~~El~~al----~~~--a~iiGINnRd------L~tf 192 (254)
T PF00218_consen 142 LSDDQ------------LEELLELAHSLGLEA----LVEV-HNEEELERAL----EAG--ADIIGINNRD------LKTF 192 (254)
T ss_dssp SGHHH------------HHHHHHHHHHTT-EE----EEEE-SSHHHHHHHH----HTT---SEEEEESBC------TTTC
T ss_pred CCHHH------------HHHHHHHHHHcCCCe----EEEE-CCHHHHHHHH----HcC--CCEEEEeCcc------ccCc
Confidence 5 333 345577888889875 3322 3667765544 555 6677777542 2211
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCC
Q 020848 218 KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTP 276 (320)
Q Consensus 218 ~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~ 276 (320)
..+.+. .......+|...+.++.+ ++. ++.......+|++.+.+|+.++.+.
T Consensus 193 -~vd~~~----~~~l~~~ip~~~~~iseS--GI~~~~d~~~l~~~G~davLVGe~lm~~~ 245 (254)
T PF00218_consen 193 -EVDLNR----TEELAPLIPKDVIVISES--GIKTPEDARRLARAGADAVLVGEALMRSP 245 (254)
T ss_dssp -CBHTHH----HHHHHCHSHTTSEEEEES--S-SSHHHHHHHCTTT-SEEEESHHHHTSS
T ss_pred -ccChHH----HHHHHhhCccceeEEeec--CCCCHHHHHHHHHCCCCEEEECHHHhCCC
Confidence 122222 222334455555555421 222 2333445568999999998666543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=92.37 E-value=12 Score=36.60 Aligned_cols=223 Identities=10% Similarity=0.030 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCH-----------HHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIE 123 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~-----------e~l~~ 123 (320)
....+-++.++...+.|+++++|..-+-...+ +...+..+++++++. +..+++.+-.|..+. +.+++
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~-~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDF-PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCC-cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHH
Confidence 34455677788888899999998642211011 224455778888876 457888888787664 78999
Q ss_pred HHHhccCeeccCcccc--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----------------------------
Q 020848 124 LKKAGLTAYNHNLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCSGG---------------------------- 173 (320)
Q Consensus 124 L~~aGld~v~i~let~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~---------------------------- 173 (320)
|.++|+|.|.++-... ++.|=.-....+++-+-+..+..-+.-+-+.++.
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEY 422 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccc
Confidence 9999999999986554 2222222233455444444433321111122221
Q ss_pred ----EEEeC---CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 174 ----IIGLG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 174 ----i~Glg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
++-.| .+.-+..+.++.+.++| ...+-+ .-+-..||.- .++.+ +++.++. .. +..+-.++|
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~G--ageil~-t~id~DGt~~----G~d~~-l~~~v~~---~~-~ipviasGG 490 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELG--AGEILL-NCIDCDGQGK----GFDIE-LVKLVSD---AV-TIPVIASSG 490 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcC--CCEEEE-eecccccccc----CcCHH-HHHHHHh---hC-CCCEEEECC
Confidence 11122 23446677788888887 434333 2233446542 23333 2332221 11 222223443
Q ss_pred ccccChhHHHHHHH-cCCceEeeCCccccCCCCChhHHHHHHHHcCCCc
Q 020848 247 RVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 247 ~~~~~~~~~~~~~~-~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p 294 (320)
-.+. .+. ...|. .|++....+. +..-..-+..++.+.+++.|+.+
T Consensus 491 ~g~~-~d~-~~~~~~~~~~a~~aa~-~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 491 AGTP-EHF-SDVFSKTNASAALAAG-IFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCCH-HHH-HHHHhcCCccEEEEEe-eeccCCCCHHHHHHHHHHCCCcc
Confidence 3222 222 33444 5667665554 44445678899999999999765
|
|
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.30 E-value=12 Score=36.65 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-----CceEEEeCCCCCHHHHHH----
Q 020848 53 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIE---- 123 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-----~~~i~~~~g~l~~e~l~~---- 123 (320)
...++.++=++.++.+.+.|++.|-++. +..+ +.=.+.++.+.+. +..++.- ....+..+++
T Consensus 46 gv~~s~~~Ki~ia~~L~~~GV~~IE~Gf---P~~s-----~~e~e~v~~i~~~~~~~~~~~i~~l-~r~~~~di~~a~~a 116 (552)
T PRK03739 46 IEPMSPERKLRMFDLLVKIGFKEIEVGF---PSAS-----QTDFDFVRELIEEGLIPDDVTIQVL-TQAREHLIERTFEA 116 (552)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCcC-----hHHHHHHHHHHHhcCCCCCCEEEEE-eccchhHHHHHHHH
Confidence 3448999999999999999999997752 2222 2234455555322 3333211 1122333443
Q ss_pred HHHhccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe---eeeeEEEEeC----CCHHHHHHHHHHHhc
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN---VCSGGIIGLG----EAEEDRVGLLHTLAT 193 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~---v~~~~i~Glg----et~ed~~~~l~~l~~ 193 (320)
++.++...|.+.+-+++ -...+++.. ...+...+.++.+++.|.. ....+.++.. -+.+-+.++++.+.+
T Consensus 117 ~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~ 196 (552)
T PRK03739 117 LEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVID 196 (552)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 33444456777777773 333344322 2345566677777777743 2244555442 245556777777665
Q ss_pred C-CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecC--CcccccChhHHHHHHHcCCceEe
Q 020848 194 L-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLS--AGRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 194 l-~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~--~g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
. +.+.+...... +++|- ....+.++.+++...+..+|+ ..+.+- .. .++--.....++.+||..+-
T Consensus 197 ~~~ag~~~~~~i~---l~DTv----G~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND-~GlAvANslaAv~aGa~~v~ 268 (552)
T PRK03739 197 VWQPTPERKVILN---LPATV----EMSTPNVYADQIEWMCRNLARRDSVILSLHPHND-RGTGVAAAELALMAGADRVE 268 (552)
T ss_pred hhcCCCCceeEEE---eccCC----cCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCC-CChHHHHHHHHHHhCCCEEE
Confidence 3 21233222111 44553 345677777888777766663 222211 11 11111234568899998872
Q ss_pred ---eCCccccCCCCChhHHHHHHHHcCCC
Q 020848 268 ---TGEKLLTTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~i~~~G~~ 293 (320)
.|-+ ..++..+.++++-++...|+.
T Consensus 269 gtvnG~G-ERaGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 269 GCLFGNG-ERTGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred eeCCcCc-ccccChhHHHHHHHHHhcCCC
Confidence 2221 135566778888878777764
|
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.32 Score=45.48 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC--------Cc------------CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC--
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVK--------GQ------------KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-- 86 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~--------~~------------~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-- 86 (320)
--..|+++|.||-....+. +++ .| ..|+.+++.+.++ ++...+.++=....+.
T Consensus 80 ~~~~C~N~C~FCFidQlP~-gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~----~~lspl~iSVhat~p~lR 154 (433)
T TIGR03279 80 GLIQCNNRCPFCFIDQQPP-GKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQ----LRLSPLYVSVHATEPSLR 154 (433)
T ss_pred cccccCCcCceEeccCCCC-CCcCcceeccCcchhhhhccceeeecCCCHHHHHHHHH----cCCCCEEEEEecCCHHHH
Confidence 4678999999995543221 211 11 1256777766654 6777777643211111
Q ss_pred ----CCchhHHHHHHHHHHhhhcCceE----EEeCCCC----CHHHHHHHHHh
Q 020848 87 ----GRKTNFNQILEYVKDIRDMGMEV----CCTLGML----EKHQAIELKKA 127 (320)
Q Consensus 87 ----ge~~~~~~l~~~i~~~k~~~~~i----~~~~g~l----~~e~l~~L~~a 127 (320)
+.| ....+++.++++.+.++++ ...+|.- .++.++.|.+.
T Consensus 155 ~~ll~n~-~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~dL~~~ 206 (433)
T TIGR03279 155 ARLLKNP-RAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLRDLAQF 206 (433)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHHHHHhh
Confidence 111 3466778888887667663 3345543 45566667665
|
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=92.16 E-value=7.2 Score=33.76 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC-ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN-LDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~-let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
.+++.++.+..++.|+....|+ .+.+.++.|.+.|++.+-|. -|. +. +..++.+.+.|.++
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KIaS~dl------------~n---~~lL~~~A~tgkPv- 116 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKIASGDL------------TN---LPLLEYIAKTGKPV- 116 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE-GGGT------------T----HHHHHHHHTT-S-E-
T ss_pred HHHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEeccccc------------cC---HHHHHHHHHhCCcE-
Confidence 3556667777777888876664 67899999999888887763 111 11 45566767777764
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccc
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVR 249 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~ 249 (320)
|+.. .-+.+|+.+.++.+++-+ ...+.+..-+ .+ .|.+..+--++.+...+..++ ..+-++.-..+
T Consensus 117 ---IlSTG~stl~EI~~Av~~~~~~~--~~~l~llHC~--s~-----YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 117 ---ILSTGMSTLEEIERAVEVLREAG--NEDLVLLHCV--SS-----YPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp ---EEE-TT--HHHHHHHHHHHHHHC--T--EEEEEE---SS-----SS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ---EEECCCCCHHHHHHHHHHHHhcC--CCCEEEEecC--CC-----CCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 5556 468899999999996554 2334443221 11 122223334566777777777 33333311112
Q ss_pred cChhHHHHHHHcCCceE---eeCCccc----cCCCCChhHHHHHHHH
Q 020848 250 FSMPEQALCFLAGANSI---FTGEKLL----TTPNNDFDADQLMFKV 289 (320)
Q Consensus 250 ~~~~~~~~~~~~Gan~~---~~~~~~~----~~~~~~~~~~~~~i~~ 289 (320)
-.....++..||..+ ++-++-. .....++++..+|+++
T Consensus 184 --~~~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ 228 (241)
T PF03102_consen 184 --IEAPIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDELKQLVRD 228 (241)
T ss_dssp --SHHHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHH
T ss_pred --cHHHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHHHHHHHHH
Confidence 223456777899887 3322211 1112457777777654
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=7.1 Score=33.62 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
.++.++.+.+.|++.+.+..-.... .......+.++.+. ..++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~----~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAF----EGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhh----cCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 4445555667899998885421111 12223344555544 45788888889999999999999999999886533
|
|
| >KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.4 Score=38.54 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC--C-HHHHHHHHHH
Q 020848 87 GRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR--S-YDERLETLKH 161 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~--~-~~~~l~~i~~ 161 (320)
|+|..++.+-.+++.+++..+. ..++|.. -.+.+..++. +..+.++++.. ...++.+.++- + |+..++.++.
T Consensus 363 gepi~yp~in~f~k~lH~k~issflvtnaq-~pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 363 GEPIMYPEINPFAKLLHQKLISSFLVTNAQ-FPEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccccchhhhHHHHHHHhccchHHhccccc-ChHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 5678888999999998866555 3455543 3555555555 55677788887 67777765542 2 4555566666
Q ss_pred HHHcCCe--eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC---CCCCCCCCCCHHHHHHHHH
Q 020848 162 VREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG---TPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 162 a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g---t~~~~~~~~~~~e~~~~~a 230 (320)
+++.--+ +..+++- +-|.+|+.+-...+..-- ++.+.+-.-.-... .++-....+..++..+...
T Consensus 440 lk~K~qrtvyRlTlVk--g~n~dd~~Ayfnlv~rgl--p~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~ 509 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVK--GWNSDDLPAYFNLVSRGL--PDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVF 509 (601)
T ss_pred HHHhhcceEEEEEEec--cccccccHHHHHHHhccC--CceEEEeceeEecccccCcccccCccHHHHHHHHHH
Confidence 6543222 3344333 446667766666554322 44454433332222 2222223344555555543
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=91.98 E-value=7.4 Score=33.46 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHH---hccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK---AGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~---aGld~v 132 (320)
++.+. .+..+.+.+.|-++|.+- . ......+.+-+.++++ +.++.++.+..+.+.+.++.+ .+.+.|
T Consensus 27 ~d~~t-~~a~~~~~~rgr~ef~~~-------~-e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~~~d~I 96 (231)
T TIGR00736 27 ADRAT-YKASRDIEKRGRKEFSFN-------L-EEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAEHADII 96 (231)
T ss_pred CCHHH-HHHHHHHHHcCCcccCcC-------c-ccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhcCCCEE
Confidence 44333 444567777888777431 1 1244566666777763 446777777777666555533 367777
Q ss_pred ccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 133 NHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 133 ~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
.++.--. +++.+.-.+ .++++...+.++.+++.++++.+-+=.|. +..+..++.+.+.+.| .+.+.+....|
T Consensus 97 diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~aG--ad~i~Vd~~~~ 172 (231)
T TIGR00736 97 EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDDG--FDGIHVDAMYP 172 (231)
T ss_pred EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHcC--CCEEEEeeCCC
Confidence 6665444 344332111 24778888888888877777666655433 4456778888888888 67777754332
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
|.+ . -.++.+...+..++... -+..|-+ ...+.....+.+||+.++.+.
T Consensus 173 --g~~-----~----a~~~~I~~i~~~~~~ip-IIgNGgI-~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 173 --GKP-----Y----ADMDLLKILSEEFNDKI-IIGNNSI-DDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred --CCc-----h----hhHHHHHHHHHhcCCCc-EEEECCc-CCHHHHHHHHHhCCCeEEEcH
Confidence 221 1 12344444444443211 1222212 122334566778999998874
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.9 Score=36.46 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-ccC-CCCCC----chhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGA-AWR-DTIGR----KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~-g~~-~~~ge----~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
-+++++.+.++...+.|+..|.+.. |.. ..... ....+.+.++++.+++.|+.+.++.. ....++.+.++|+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 4689999999999999998876632 111 11010 13456777888888887877665543 2455666667777
Q ss_pred CeeccC
Q 020848 130 TAYNHN 135 (320)
Q Consensus 130 d~v~i~ 135 (320)
+.+.+.
T Consensus 195 ~~i~H~ 200 (342)
T cd01299 195 DTIEHG 200 (342)
T ss_pred CEEeec
Confidence 766554
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=91.93 E-value=6.8 Score=32.97 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+.|+.++.++.+.+.|++-+-++-- -+.-.+.++.+++..-++.+-.|. ++.++++...++|.+.+ +
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~----------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-v 85 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR----------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-V 85 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC----------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-E
Confidence 58899999999999999998877531 133445555555322244455554 89999999999999876 2
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
+ +.-+ -+.++.+++.|+.+-.+++ |+.|+... .+.| .+.+.+++ ...+
T Consensus 86 s------------P~~~----~~v~~~~~~~~i~~iPG~~-----TptEi~~A----~~~G--a~~vKlFP-----A~~~ 133 (204)
T TIGR01182 86 S------------PGLT----PELAKHAQDHGIPIIPGVA-----TPSEIMLA----LELG--ITALKLFP-----AEVS 133 (204)
T ss_pred C------------CCCC----HHHHHHHHHcCCcEECCCC-----CHHHHHHH----HHCC--CCEEEECC-----chhc
Confidence 2 1111 2667788888887644332 56666554 3455 56666644 2111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
. .+ ..+...+.-+|+..+-.++ ++..+.-...+.+|+..+..|..+
T Consensus 134 G---G~------~yikal~~plp~i~~~ptG---GV~~~N~~~~l~aGa~~vg~Gs~L 179 (204)
T TIGR01182 134 G---GV------KMLKALAGPFPQVRFCPTG---GINLANVRDYLAAPNVACGGGSWL 179 (204)
T ss_pred C---CH------HHHHHHhccCCCCcEEecC---CCCHHHHHHHHhCCCEEEEEChhh
Confidence 1 01 2334445566664333232 233344456778999888777633
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=91.90 E-value=9.7 Score=34.66 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe---------CCC---------C------------CH
Q 020848 69 KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGM---------L------------EK 118 (320)
Q Consensus 69 ~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~---------~g~---------l------------~~ 118 (320)
++.|+..|-+=--..+..+.-..+++.+++.+++|+.|+.+++. +|. + +.
T Consensus 34 k~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~ 113 (332)
T PF07745_consen 34 KDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTK 113 (332)
T ss_dssp HHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHH
T ss_pred HhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Confidence 44788776651111232212356789999999999888875432 221 1 46
Q ss_pred HHHHHHHHhcc--CeeccCccccHHHHhhhCCCCCHHHHHHHHH----HHHHcCCeeeeeEEEEe--CCCHHHHHHHHHH
Q 020848 119 HQAIELKKAGL--TAYNHNLDTSREFYSKIITTRSYDERLETLK----HVREAGINVCSGGIIGL--GEAEEDRVGLLHT 190 (320)
Q Consensus 119 e~l~~L~~aGl--d~v~i~let~~~~~~~i~~~~~~~~~l~~i~----~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~ 190 (320)
+.++.|+++|+ +.|.++=|+....+--..+..+++...+.++ ..++.+ ..+-+++-+ +.+.+.....+..
T Consensus 114 ~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~--p~~kV~lH~~~~~~~~~~~~~f~~ 191 (332)
T PF07745_consen 114 DVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD--PNIKVMLHLANGGDNDLYRWFFDN 191 (332)
T ss_dssp HHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS--STSEEEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC--CCCcEEEEECCCCchHHHHHHHHH
Confidence 67789999996 6788876654222222223456665554443 333322 223345544 5666777888888
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcc
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR 247 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~ 247 (320)
++..+.+.+.++++.| |. -.. +.+.+...+..++.-+....+...+++
T Consensus 192 l~~~g~d~DviGlSyY-P~-----w~~---~l~~l~~~l~~l~~ry~K~V~V~Et~y 239 (332)
T PF07745_consen 192 LKAAGVDFDVIGLSYY-PF-----WHG---TLEDLKNNLNDLASRYGKPVMVVETGY 239 (332)
T ss_dssp HHHTTGG-SEEEEEE--ST-----TST----HHHHHHHHHHHHHHHT-EEEEEEE--
T ss_pred HHhcCCCcceEEEecC-CC-----Ccc---hHHHHHHHHHHHHHHhCCeeEEEeccc
Confidence 8888766777777554 42 111 456666666554433344444433333
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A .... |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.5 Score=37.56 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+|+++.+...+ -..++|+--. +..+| -....+.+.+.++.+|+.|++++.-.. -+.++++.-++.|.|+
T Consensus 73 t~e~~~ia~~~k---P~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~Gad~ 148 (239)
T PF03740_consen 73 TEEMVDIALKVK---PDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKELGADR 148 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHTT-SE
T ss_pred CHHHHHHHHhCC---cCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHcCCCE
Confidence 366777665544 3477775100 00011 123578899999999999998654322 3488999999999999
Q ss_pred eccCccccHHHHhhhCCCC-C-HHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHH
Q 020848 132 YNHNLDTSREFYSKIITTR-S-YDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~-~-~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~ 185 (320)
|-+.-..+.+.+..-.... . ++++.++.+.+++.|+.+. .|+|-+.+.+.
T Consensus 149 VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~Vn----AGHgL~y~N~~ 200 (239)
T PF03740_consen 149 VELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVN----AGHGLNYDNVR 200 (239)
T ss_dssp EEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEE----EETT--TTTHH
T ss_pred EEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 8876544322221110011 1 4667777788888887664 45665544433
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=91.82 E-value=7.5 Score=33.20 Aligned_cols=185 Identities=20% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.++.++.+.+.|++.+++..-.....+.+.. .++++.+. ..++++....|..+.+.++.+.++|++.+.++-...
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~----~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l 105 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGPVN----LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAV 105 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCCCc----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3444555677899999886432221122223 33444443 346778888899999999999999999987664322
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE----eCC---CHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG----LGE---AEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G----lge---t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+.+...+..+.+....+-+.+++--| .|. +..+..++++.+.+.| ++.+-+..... .|+
T Consensus 106 ----------~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g--~~~ii~~~~~~-~g~ 172 (230)
T TIGR00007 106 ----------ENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG--LEGIIYTDISR-DGT 172 (230)
T ss_pred ----------hCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC--CCEEEEEeecC-CCC
Confidence 122333333333321112222332211 221 1234567777778887 56555544432 233
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.. .++.+. +...+... +..+-+++|-.+. .+. ...+..||+.++.|..++
T Consensus 173 ~~----g~~~~~----i~~i~~~~-~ipvia~GGi~~~-~di-~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 173 LS----GPNFEL----TKELVKAV-NVPVIASGGVSSI-DDL-IALKKLGVYGVIVGKALY 222 (230)
T ss_pred cC----CCCHHH----HHHHHHhC-CCCEEEeCCCCCH-HHH-HHHHHCCCCEEEEeHHHH
Confidence 21 233322 22222222 2222333332221 222 345678999998886443
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=8.5 Score=33.83 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC--CC---------------
Q 020848 56 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--LE--------------- 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~--l~--------------- 117 (320)
-+.|.+.+.-+.+.+ .|+-.+.+++ +|. ..-+++++++....+. +++.+..|+ ..
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgT--RPD----Clpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGT--RPD----CLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecC--CCC----CCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHH
Confidence 356666666665554 4666666654 443 4557888888888754 555555554 22
Q ss_pred -HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe-CC--------------C
Q 020848 118 -KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GE--------------A 180 (320)
Q Consensus 118 -~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-ge--------------t 180 (320)
.+.++++++.|+..+.+-+-++ ++.+.++.+++++.+...|+. +.++.+.-+ |- +
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GL--------PgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls 241 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGL--------PGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLS 241 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCC--------CCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceecc
Confidence 3444455555554444333221 466899999999999999987 888877755 42 4
Q ss_pred HHHHHHHH-HHHhcCCCCCCeeeeeeeee
Q 020848 181 EEDRVGLL-HTLATLPTHPESVPINALLA 208 (320)
Q Consensus 181 ~ed~~~~l-~~l~~l~~~~~~v~~~~~~p 208 (320)
.+|..+++ +++..+ +..+.++.+.-
T Consensus 242 ~eeYv~~~~d~le~l---pp~vviHRitg 267 (312)
T COG1242 242 LEEYVELVCDQLEHL---PPEVVIHRITG 267 (312)
T ss_pred HHHHHHHHHHHHHhC---CcceEEEEecC
Confidence 45655544 555666 45677777653
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=91.70 E-value=7 Score=32.67 Aligned_cols=192 Identities=10% Similarity=0.097 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cce--E-EEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME--V-CCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~--i-~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+++.+.+.++.+.+.|++.+.+.-.+.+... ....-.+.++.+++. ..+ + ....+ ..+.++.++++|.|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~--~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVEN--PDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCC--HHHHHHHHHHcCCCE
Confidence 56678888999999999999988411111111 112344555555532 233 2 12222 356788899999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..+. .+...+.++.+++.|+.+.+ .+.. .+..+..+.+ ... ++.+.+.++.| |
T Consensus 83 v~vh~~~-------------~~~~~~~~~~~~~~g~~~~~--~~~~-~t~~e~~~~~---~~~---~d~i~~~~~~~--g 138 (210)
T TIGR01163 83 ITVHPEA-------------SEHIHRLLQLIKDLGAKAGI--VLNP-ATPLEFLEYV---LPD---VDLVLLMSVNP--G 138 (210)
T ss_pred EEEccCC-------------chhHHHHHHHHHHcCCcEEE--EECC-CCCHHHHHHH---Hhh---CCEEEEEEEcC--C
Confidence 8774322 12334556777888876532 2222 2333322222 111 44555554433 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQL 285 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~ 285 (320)
+.-... .+. .++.+...+.+.++ ..+-+.+ ++.++.-...+..|++.++.|..+... .++.+.++
T Consensus 139 ~tg~~~---~~~-~~~~i~~i~~~~~~~~~~~~i~v~G---GI~~env~~l~~~gad~iivgsai~~~--~d~~~~~~ 207 (210)
T TIGR01163 139 FGGQKF---IPD-TLEKIREVRKMIDENGLSILIEVDG---GVNDDNARELAEAGADILVAGSAIFGA--DDYKEVIR 207 (210)
T ss_pred CCcccc---cHH-HHHHHHHHHHHHHhcCCCceEEEEC---CcCHHHHHHHHHcCCCEEEEChHHhCC--CCHHHHHH
Confidence 221111 111 12233333333221 1222222 344444445678899999888644322 24544443
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.4 Score=31.53 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc---eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~---~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.|+|++.+.+. +.+.+-+.+.+-. ....+.+.++++.+++.+. .+. -.|....+..+.|+++|+|.+
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~------~~~~~~~~~~~~~L~~~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA------GGHLTLVPALRKELDKLGRPDILVV-VGGVIPPQDFDELKEMGVAEI 109 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch------hhhHHHHHHHHHHHHhcCCCCCEEE-EeCCCChHhHHHHHHCCCCEE
Confidence 57888877664 5678888876521 1245566666667775543 333 355667788899999999986
Q ss_pred cc
Q 020848 133 NH 134 (320)
Q Consensus 133 ~i 134 (320)
..
T Consensus 110 ~~ 111 (132)
T TIGR00640 110 FG 111 (132)
T ss_pred EC
Confidence 54
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=91.53 E-value=8.3 Score=33.18 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCC---------CHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML---------EKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l---------~~e~l~~L~~ 126 (320)
+++..+...++.+- .-++-+.|++|+.... .-+.+-+.++.+++.++.+++- |.+ -++.++..++
T Consensus 9 l~~~~~~d~Le~~g-~yID~lKfg~Gt~~l~----~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~ 82 (237)
T TIGR03849 9 LPPKFVEDYLKVCG-DYITFVKFGWGTSALI----DRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDE 82 (237)
T ss_pred CCHHHHHHHHHHhh-hheeeEEecCceEeec----cHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHH
Confidence 45555555444322 2256677766543221 1234777777778778776543 422 3566678999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--C-----CCHHHHHHHHHHHhcCCCCCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--G-----EAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--g-----et~ed~~~~l~~l~~l~~~~~ 199 (320)
.|++.|-+|--+. .-+.+++++.|+.+++.|+++.+- +|. . .+.+++.+.++...+-| .+
T Consensus 83 lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG--A~ 149 (237)
T TIGR03849 83 LGFEAVEISDGSM---------EISLEERCNLIERAKDNGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG--AD 149 (237)
T ss_pred cCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC--Cc
Confidence 9999998875332 346788889999999999876443 233 1 34456666666656676 55
Q ss_pred eeee
Q 020848 200 SVPI 203 (320)
Q Consensus 200 ~v~~ 203 (320)
.|-+
T Consensus 150 ~Vii 153 (237)
T TIGR03849 150 YVII 153 (237)
T ss_pred EEEE
Confidence 5544
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.50 E-value=1.7 Score=34.16 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EE-EeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~-~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
-+++|+.+.+ .+..+.-|.+++- . + .....+.++++.+++.|.. +. .-.|.+..+.++.|++.|++++.
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl---~-g--~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL---D-G--GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec---c-c--hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 5788888776 4455656655431 1 2 2445666677777777766 44 55677899999999999999876
Q ss_pred c
Q 020848 134 H 134 (320)
Q Consensus 134 i 134 (320)
.
T Consensus 121 ~ 121 (143)
T COG2185 121 G 121 (143)
T ss_pred C
Confidence 5
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=91.36 E-value=3.3 Score=35.43 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+.+..-+....|.+.. .+.++.+. ..++++.+..|..+.+.++++.++|++.+.++-..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~----~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVN----LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCccc----HHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 33444555666899999887632111122223 44444444 34688888999999999999999999998776533
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=91.32 E-value=4.8 Score=34.52 Aligned_cols=126 Identities=11% Similarity=0.124 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC--------CCHHHHHH----
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIE---- 123 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~--------l~~e~l~~---- 123 (320)
.+.+.....++.+.+.|++.+.++--... ..+...++.+.++.+..++.++++.++... ++.+.+.+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGS-EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 44566666777888899998866431110 011123334444444445567775544322 34555555
Q ss_pred HHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeeeEEEE-eC-CCHHHHHHHHHHHhcCCCCCCe
Q 020848 124 LKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIG-LG-EAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 124 L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~-Gi~v~~~~i~G-lg-et~ed~~~~l~~l~~l~~~~~~ 200 (320)
..++|.|.|.++..+ + ++.++.+.+. ++++ ++.| .+ .+.++..+.+..+.+.| ...
T Consensus 152 a~~~GaD~Ik~~~~~------------~----~~~~~~i~~~~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~G--a~g 210 (235)
T cd00958 152 GAELGADIVKTKYTG------------D----AESFKEVVEGCPVPV---VIAGGPKKDSEEEFLKMVYDAMEAG--AAG 210 (235)
T ss_pred HHHHCCCEEEecCCC------------C----HHHHHHHHhcCCCCE---EEeCCCCCCCHHHHHHHHHHHHHcC--CcE
Confidence 667799988885311 2 2334444432 2332 3333 22 57788888888888887 554
Q ss_pred eee
Q 020848 201 VPI 203 (320)
Q Consensus 201 v~~ 203 (320)
+.+
T Consensus 211 v~v 213 (235)
T cd00958 211 VAV 213 (235)
T ss_pred EEe
Confidence 444
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=6.5 Score=34.09 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC----CCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g----~l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+-=. ..| ....+.+.++++..+ ++++..+-. .-..+.++.|.+.|+++|.
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~--~dg-~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL 146 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLD--VDG-HVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeEC--CCC-CcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence 4555666677788999999886421 112 245566777777665 344332211 1235678999999999987
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHH
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 187 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 187 (320)
-+= ...+..+-++.++.+.+..-.. . +|.|-|-+.+.+.++
T Consensus 147 TSG-----------g~~~a~~g~~~L~~lv~~a~~~-~-Im~GgGV~~~Nv~~l 187 (248)
T PRK11572 147 TSG-----------QQQDAEQGLSLIMELIAASDGP-I-IMAGAGVRLSNLHKF 187 (248)
T ss_pred CCC-----------CCCCHHHHHHHHHHHHHhcCCC-E-EEeCCCCCHHHHHHH
Confidence 641 1223444455555555421121 2 888889898887776
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=91.21 E-value=5.9 Score=34.50 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC----------------------CCCCc-hhHHHHHHHHHHhhh-cCceEEE
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD----------------------TIGRK-TNFNQILEYVKDIRD-MGMEVCC 111 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~----------------------~~ge~-~~~~~l~~~i~~~k~-~~~~i~~ 111 (320)
+++||..+....+.+.|+..|.+.+.+.+ ..|.. ..-+.+.+.++.+|+ .+.++.+
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 78899988888888888888777632111 11211 123556667777775 3677777
Q ss_pred eCCCCCHHHHHHHHHhccCeeccC
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
--|.-+.+.++.+.+.|.|.+-++
T Consensus 195 GFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 195 GFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred eCCCCCHHHHHHHHhcCCCEEEEC
Confidence 778888999999999999988776
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=91.13 E-value=7.4 Score=37.50 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccCcc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~le 137 (320)
+++++.++.+.+.|++-|-++++... | ..+.+...++.+++. +++++ ....+.+.+++-.++|.+.|+ ++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~----p-~~~~v~~~V~~l~~~~~~pIS--IDT~~~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD----D-DPDVVKEKVKTALDALDSPVI--ADTPTLDELYEALKAGASGVI-MPD 236 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC----C-cHHHHHHHHHHHHhhCCCcEE--EeCCCHHHHHHHHHcCCCEEE-ECC
Confidence 88999999999999999988765321 2 234678888888754 55543 355778888888888988776 443
Q ss_pred cc--HHHHhhhCC------------CCCHHHHHHHHHHHHHcCC-eeeeeEEEEeCCCHHHHHHHHHHHh
Q 020848 138 TS--REFYSKIIT------------TRSYDERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLA 192 (320)
Q Consensus 138 t~--~~~~~~i~~------------~~~~~~~l~~i~~a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~ 192 (320)
.. ++..+.+.. ...++...+.++.+.+.|+ ++-++-++|. .+ .++.+.+..++
T Consensus 237 ~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~-~~-~~l~~sL~~l~ 304 (499)
T TIGR00284 237 VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP-PL-LGLLESIIRFR 304 (499)
T ss_pred ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc-ch-HHHHHHHHHHH
Confidence 33 333221111 2245677788888999999 4666666665 22 23555555554
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=90.99 E-value=8.8 Score=32.44 Aligned_cols=186 Identities=18% Similarity=0.219 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+.+.++.+...|.+.+-+-. -++|.++++.+ .++++|++. +.++.+-.-.++|.|-+.++
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-----------dp~LV~~~~~~--s~lPICVSa--Vep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-----------DPELVKLAKSL--SNLPICVSA--VEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-----------CHHHHHHHHHh--CCCCeEeec--CCHHHHHHHHHhCCCEEEec
Confidence 5678899888887777887775532 14555555533 367887764 77888888999999999886
Q ss_pred -ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 136 -LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 136 -let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
.|+ .|.+ .+.-+.+++++.-++-++.=-.+...+.+=+--..++-.++...|.++| .+.+. -.+||.-
T Consensus 89 NfDs---FY~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~G--aDiIQ-----TEGgtss 157 (242)
T PF04481_consen 89 NFDS---FYAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAG--ADIIQ-----TEGGTSS 157 (242)
T ss_pred chHH---HHhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhC--CcEEE-----cCCCCCC
Confidence 444 4555 3456889999988888885222333333323345667788888888888 44332 2334432
Q ss_pred CCCCCCC---HHHHHHHHHHHHHhCCCceeec-C-CcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVE---IWEMIRMIATARIVMPKAMVRL-S-AGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~---~~e~~~~~a~~R~~~p~~~i~~-~-~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
....+-. .+...-.++.+..+....-+++ + .|. ..-...+++.+||..+=.|.
T Consensus 158 ~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGl---S~vT~PmAiaaGAsGVGVGS 215 (242)
T PF04481_consen 158 KPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGL---SAVTAPMAIAAGASGVGVGS 215 (242)
T ss_pred CCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCc---chhhHHHHHHcCCcccchhH
Confidence 2211111 1111122222222222333332 2 232 22234678999999885553
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.8 Score=36.88 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 91 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
..+.+.+.++.+++.|++++.-.. -+.++++.-++.|.|.|-+.-..+.+.+..-.....++++.++.+.+++.|+.+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiD-Pd~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn 186 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFID-PDPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVN 186 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 568899999999999998654332 4588999999999999887654442211111111236666777777777777664
Q ss_pred eeEEEEeCCCHHHHHHHHH
Q 020848 171 SGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~ 189 (320)
.|+|-+.+.+..+..
T Consensus 187 ----AGHgLny~Nv~~i~~ 201 (234)
T cd00003 187 ----AGHGLNYENVKPIAK 201 (234)
T ss_pred ----cCCCCCHHHHHHHHh
Confidence 467878777655543
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.8 Score=36.76 Aligned_cols=218 Identities=12% Similarity=0.129 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
.-+.++.++.+.+.|+++++|..-+-.. ...+-+++.+++.. ...+++++-.|.-+.+.+++|..+|.|.|+++-
T Consensus 29 ~GDpVelA~~Y~e~GADElvFlDItAs~----~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 29 AGDPVELAKRYNEEGADELVFLDITASS----EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred cCChHHHHHHHHHcCCCeEEEEeccccc----ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 3456777888888999999886432222 23456677777766 567888888999999999999999999999875
Q ss_pred ccc--HHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeeeEEEEe---CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 137 DTS--REFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGL---GEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 137 et~--~~~~~~i~~~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Gl---get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
... |++...+......+-++=+|..-+. .| .-.-.-++-. ..+.-+..+-.+...++| .-.+-++. +-..
T Consensus 105 aAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g-~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G--AGEIlLts-mD~D 180 (256)
T COG0107 105 AAVKDPELITEAADRFGSQCIVVAIDAKRVPDG-ENGWYEVFTHGGREDTGLDAVEWAKEVEELG--AGEILLTS-MDRD 180 (256)
T ss_pred hHhcChHHHHHHHHHhCCceEEEEEEeeeccCC-CCCcEEEEecCCCcCCCcCHHHHHHHHHHcC--CceEEEee-eccc
Confidence 443 3332222110000000000000000 01 0000112212 233345566666667777 33444433 3344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcC-CceEeeCCccccCCCCChhHHHHHHHH
Q 020848 211 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 211 gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~G-an~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
||... .+.+. ++ ..+....=+.| .++|-.+. .. -..+|..| |+...... +..-..-+..++.+.+.+
T Consensus 181 Gtk~G----yDl~l-~~---~v~~~v~iPvI-ASGGaG~~-eh-f~eaf~~~~adAaLAAs-iFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 181 GTKAG----YDLEL-TR---AVREAVNIPVI-ASGGAGKP-EH-FVEAFTEGKADAALAAS-IFHFGEITIGEVKEYLAE 248 (256)
T ss_pred ccccC----cCHHH-HH---HHHHhCCCCEE-ecCCCCcH-HH-HHHHHHhcCccHHHhhh-hhhcCcccHHHHHHHHHH
Confidence 66532 22221 22 22222221222 23333221 12 24455555 44333222 223344678999999999
Q ss_pred cCCCcC
Q 020848 290 LGLTPK 295 (320)
Q Consensus 290 ~G~~p~ 295 (320)
.|+.+.
T Consensus 249 ~gi~VR 254 (256)
T COG0107 249 QGIEVR 254 (256)
T ss_pred cCCCcc
Confidence 998764
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.2 Score=40.72 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeeeEEEEeCCCHHHHHHHHHHHhc
Q 020848 117 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLAT 193 (320)
Q Consensus 117 ~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~ 193 (320)
+-+.++.+.++|+|.|.++...+ -+.+. ..-+.+++.+.++.++++|.+ +.++... +.+..+.+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~-~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLL-HNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEecccc-ccchhhHHHHHHHHHHH
Confidence 45778888888999999998643 22211 135788899999999999987 4444444 46677778899999999
Q ss_pred CCCCCCeeee
Q 020848 194 LPTHPESVPI 203 (320)
Q Consensus 194 l~~~~~~v~~ 203 (320)
+| ++.|-+
T Consensus 91 ~G--vDaviv 98 (347)
T COG0826 91 LG--VDAVIV 98 (347)
T ss_pred cC--CCEEEE
Confidence 88 444443
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=90.66 E-value=27 Score=37.48 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhHHHHHHHHHHhhh----cCceEEEe--C--CC--CC----HH
Q 020848 56 MTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGMEVCCT--L--GM--LE----KH 119 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~----~~~~i~~~--~--g~--l~----~e 119 (320)
+..++++..+..+.+. |+-.+-.-||-+...--..+.++=++-++.+++ ..+..+.. | |. .. +.
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~ 629 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKY 629 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHH
Confidence 5677888888777663 776666554422110000111223344444442 22332222 1 21 22 34
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE-------e-CCCHHHHHHHHHHH
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-------L-GEAEEDRVGLLHTL 191 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G-------l-get~ed~~~~l~~l 191 (320)
.++..++.|+|.+.+. | . -.+.+....+++.+++.|..+...+.+- . ..+.+-+.++++.+
T Consensus 630 f~~~~~~~Gidifrif-D-------~---lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRVF-D-------S---LNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHHHHcCCCEEEEC-c-------c---CcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 4555567788877662 2 2 2456666888999999999887777763 1 23677788888888
Q ss_pred hcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC
Q 020848 192 ATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 192 ~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
.++| ++.+.+ ++|. ....+.+...++...|..+. ..+.+-+ ...++....-..++.+||+.+-..-
T Consensus 699 ~~~G--ad~I~i------kDt~----Gll~P~~~~~Lv~~lk~~~~-~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai 765 (1143)
T TIGR01235 699 EKAG--AHILGI------KDMA----GLLKPAAAKLLIKALREKTD-LPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAV 765 (1143)
T ss_pred HHcC--CCEEEE------CCCc----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCCcHHHHHHHHHHhCCCEEEecc
Confidence 9998 555543 2321 23567777777777766552 2222210 0011222223567899999873221
Q ss_pred -ccc-cCCCCChhHHHHHHHHcCCC
Q 020848 271 -KLL-TTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 271 -~~~-~~~~~~~~~~~~~i~~~G~~ 293 (320)
++. .+..++.+.++.+++..|+.
T Consensus 766 ~gl~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 766 DSMSGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred hhhcCCCCCHhHHHHHHHHHhCCCC
Confidence 121 11224577777888777654
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=2.8 Score=36.17 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=49.8
Q ss_pred HHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 64 AAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 64 ~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.++.+.+ .|++.+++..=+....+.+..+ ++++++. ..++++.+-.|..+.+.++++.++|++++.++-.+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~----~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREF----DYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchH----HHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4555566 5899999864322212333333 3444443 456888889999999999999999999998876554
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=90.36 E-value=2.2 Score=36.49 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 91 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
..+.+.+.++.+++.|++++.=.. -+.++++.-++.|.|.|-+.-..+...+..-.....++++.++.+.+++.|+.+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiD-P~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn 186 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFID-ADKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVN 186 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 567899999999998998643322 3589999999999999988654442211110001235666677777777776654
Q ss_pred eeEEEEeCCCHHHHHHHH
Q 020848 171 SGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l 188 (320)
.|+|-+.+.+..+.
T Consensus 187 ----AGHgLny~Nv~~i~ 200 (237)
T TIGR00559 187 ----AGHGLNYHNVKYFA 200 (237)
T ss_pred ----cCCCCCHHhHHHHH
Confidence 56777777665544
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.8 Score=36.31 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
+.++.++.+.+.|++.+++..=+....|.+..+ ++++.+.+.-+++.+-.|..+.+.++.+.++|++++.++-.+.
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~----~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENL----PVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchH----HHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 445556666679999999875321112434333 3344443211567888899999999999999999998876554
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=89.90 E-value=6.4 Score=33.26 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----chhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge----~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
.+.+++++.++...+.|+.-+-++++...++.. ...++.+.++++.+++ .++.+++. ....+.++.-.++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID--T~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID--TFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--CCCHHHHHHHHHcCc
Confidence 567889999999999999999998765433322 2355677777777774 35544332 233445444444455
Q ss_pred Cee
Q 020848 130 TAY 132 (320)
Q Consensus 130 d~v 132 (320)
+.+
T Consensus 94 ~~i 96 (210)
T PF00809_consen 94 DII 96 (210)
T ss_dssp SEE
T ss_pred ceE
Confidence 544
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=89.56 E-value=12 Score=31.92 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.++.++.+.+.|++.+++..-+..-.+.+..+ ++++.+. ..++++....|..+.+.++.+.++|++.+-++-
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 334445555678999988864322211222333 3334443 346788899999999999999999999988774
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain | Back alignment and domain information |
|---|
Probab=89.50 E-value=12 Score=33.52 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhcCceEEEeCCC-----C-----C-----HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHH
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLGM-----L-----E-----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERL 156 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g~-----l-----~-----~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l 156 (320)
-..+...|+.+|+.|..+.++.|- + + ....+.+...|+|.|-+.+|... .......+.+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-----~~d~~~~~~~~ 127 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-----LTDTAAIDRRA 127 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-----cccchhHHHHH
Confidence 345677788888777776655431 1 1 23345567779999999998752 11123467778
Q ss_pred HHHHHHHHc--CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 157 ETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 157 ~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
++|+.+++. ++.+..++-+.. |-+. +-.++++.++..|..++.|.++.+-
T Consensus 128 ~al~~Lq~~~p~l~vs~Tlp~~p~gl~~-~g~~~l~~a~~~Gv~~d~VNiMtmD 180 (294)
T cd06543 128 QALALLQKEYPDLKISFTLPVLPTGLTP-DGLNVLEAAAANGVDLDTVNIMTMD 180 (294)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCCh-hHHHHHHHHHHcCCCcceeeeeeec
Confidence 888888875 555666654433 3332 3356777778777656777777664
|
Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.49 E-value=13 Score=32.26 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.++ ++.+.+.|+.-+-+.+- |.+|..=.+.++.++ ...+++..-.-..++-++.+-+.+|.|.|.+
T Consensus 66 ~dp~~i---a~~Ye~~GAa~iSVLTd-------~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 66 FDPVEI---AKAYEEGGAAAISVLTD-------PKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred CCHHHH---HHHHHHhCCeEEEEecC-------ccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 456554 44556677877766542 334434444556665 4578887777779999999999999999887
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
-+... +-++..+.+..+++.|+.+ ++- -.+.+|+...++ ++ ...|+++.- .+
T Consensus 136 I~~~L-----------~~~~l~el~~~A~~LGm~~----LVE-Vh~~eEl~rAl~----~g--a~iIGINnR------dL 187 (254)
T COG0134 136 IVAAL-----------DDEQLEELVDRAHELGMEV----LVE-VHNEEELERALK----LG--AKIIGINNR------DL 187 (254)
T ss_pred HHHhc-----------CHHHHHHHHHHHHHcCCee----EEE-ECCHHHHHHHHh----CC--CCEEEEeCC------Cc
Confidence 65444 2223345567888999875 332 236666655553 55 556666542 22
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecC-CcccccChhHHHHHHHcCCceEeeCCccccCCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN 277 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~-~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~ 277 (320)
... ..+.+ ........+|...+.++ +|-. .+..-......|+|.+++|+.++.+..
T Consensus 188 ~tf-~vdl~----~t~~la~~~p~~~~~IsESGI~--~~~dv~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 188 TTL-EVDLE----TTEKLAPLIPKDVILISESGIS--TPEDVRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred chh-eecHH----HHHHHHhhCCCCcEEEecCCCC--CHHHHHHHHHcCCCEEEecHHHhcCCC
Confidence 221 12222 23333445666555554 2211 133334556789999999986665444
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=89.49 E-value=3.6 Score=37.52 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 93 NQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
+.+.+.++.+.+.|.. +.-|.|.++++.+.++..
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~ 179 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVR 179 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHH
Confidence 4555555555544433 234456665555554433
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK13753 dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=6.6 Score=34.77 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.++++.+++.++.+.+.|+.-|-+++...-++.++ ..++.+...|+.+++.+.. ++......+.++.-.++|+|
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEEECCCHHHHHHHHHcCCC
Confidence 37899999999999999998888877443333222 2356677888888865544 34456778888888889987
Q ss_pred eec
Q 020848 131 AYN 133 (320)
Q Consensus 131 ~v~ 133 (320)
.|+
T Consensus 99 iIN 101 (279)
T PRK13753 99 YLN 101 (279)
T ss_pred EEE
Confidence 654
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=4.4 Score=35.62 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccc----------------------CCCCCC-chhHHHHHHHHHHhhh-cCceEEE
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAW----------------------RDTIGR-KTNFNQILEYVKDIRD-MGMEVCC 111 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~----------------------~~~~ge-~~~~~~l~~~i~~~k~-~~~~i~~ 111 (320)
+++||..+..+.+.+.|+..+.+.+.. .++.|. ....+.+.++++.+|+ .+.++.+
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 778888888888888888777665211 112222 1234667777777774 4667777
Q ss_pred eCCCCCHHHHHHHHHhccCeeccC
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
--|.-+.+.++.+.++|.|.+-++
T Consensus 208 GFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 208 GFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred ECCcCCHHHHHHHHhcCCCEEEEC
Confidence 777788999999999999988776
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=89.39 E-value=7.8 Score=34.66 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCC---------------CCC--CchhHHHHHHHHHHhhh-cCceEEEeCCCCCH
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIG--RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 118 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~---------------~~g--e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~ 118 (320)
+.+++.+.++.+.+.|++.+.+.++... .+| .|...+.-++.+..+++ .++++..+.|..+.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~ 246 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSF 246 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCH
Confidence 4577888888888899999887532110 000 01122233566677764 57888888899999
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++..+|+|.|.++
T Consensus 247 ~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 247 EDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHcCCCceeec
Confidence 99999988999998886
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >TIGR00620 sporelyase spore photoproduct lyase | Back alignment and domain information |
|---|
Probab=89.37 E-value=4 Score=34.13 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhh-CCCCCHHHHHHHHHHHHHcCCeeeee
Q 020848 95 ILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKI-ITTRSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 95 l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i-~~~~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
+.++|+...+ -+..+.......+.+.+..|.-.|=..+..|+.+- ++-+.. ++..++++++++++.+.++|++|+.+
T Consensus 12 l~~~I~ff~~~~~~~lef~TK~~nv~~Ll~l~~~~~t~~rfSlnp~-~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~ 90 (199)
T TIGR00620 12 LKRAIEHFGQSDFGKLRFVTKFHHVDHLLDAKHNGKTRFRFSINAD-YVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFI 90 (199)
T ss_pred HHHHHHHHccCCCcEEEEEEcccchhhHhcCCCCCCEEEEEEeCHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3334444432 23334333344555666666666655666666553 222222 24678999999999999999997766
Q ss_pred E--EEEeCCCHHHHHHHHHHHh-cCC
Q 020848 173 G--IIGLGEAEEDRVGLLHTLA-TLP 195 (320)
Q Consensus 173 ~--i~Glget~ed~~~~l~~l~-~l~ 195 (320)
+ |+-...+.++..++++.+. .+.
T Consensus 91 ~~PIi~~egW~e~Y~~l~~~l~~~l~ 116 (199)
T TIGR00620 91 IAPIYIHEGWKEGYRNLLEKLDEALP 116 (199)
T ss_pred eeceEeeCChHHHHHHHHHHHHHhCC
Confidence 5 4433456667788888775 454
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.27 E-value=2 Score=36.53 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=67.4
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE-------EEe-CC-CH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-------IGL-GE-AE 181 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i-------~Gl-ge-t~ 181 (320)
++++..-.|.+..-|++|.|.|.+|+|-.++.+.++ .-+-+++++..+.+.+.|+.+.+-++ +|. .+ +.
T Consensus 14 lp~~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRL--DWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r 91 (287)
T COG3623 14 LPNGFSWLERLALAKELGFDFVEMSVDESDERLARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATR 91 (287)
T ss_pred ccCCCCHHHHHHHHHHcCCCeEEEeccchHHHHHhc--CCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHH
Confidence 556777799999999999999999999997666665 45678889999999999987654443 333 11 11
Q ss_pred HH----HHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 182 ED----RVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 182 ed----~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+. +...+.+++++| +..|.+-.|-.
T Consensus 92 ~~aleiM~KaI~LA~dLG--IRtIQLAGYDV 120 (287)
T COG3623 92 QQALEIMEKAIQLAQDLG--IRTIQLAGYDV 120 (287)
T ss_pred HHHHHHHHHHHHHHHHhC--ceeEeecccee
Confidence 22 344566778888 66777765543
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=5.2 Score=36.10 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCC--CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHH-HhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK-KAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~--~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~-~aGld~v~ 133 (320)
.++..+.++.+.+.|++.+.+.+..... .|.+.. ++.++++| ..++++..+.+..+.+.++++. ..|+|.|.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~----~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN----WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc----HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 3557777788888999999886543211 111112 25666776 3578888888888888888865 57899999
Q ss_pred cCcccc--HHHHhhh
Q 020848 134 HNLDTS--REFYSKI 146 (320)
Q Consensus 134 i~let~--~~~~~~i 146 (320)
++=-.. |.+++++
T Consensus 223 iGRg~l~nP~lf~~~ 237 (312)
T PRK10550 223 IGRGALNIPNLSRVV 237 (312)
T ss_pred EcHHhHhCcHHHHHh
Confidence 974333 4555554
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=89.21 E-value=3 Score=35.05 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++.+++...++.+.+.|.+-|...+|..+. +...+++..+.+.++ ..+.+-+..|..+.+.+.++.++|.+++.
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~---~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPG---GATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCC---CCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 345555555555555565555544332211 122232222222222 23344445555555666666666655543
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=89.00 E-value=12 Score=31.06 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCC--CCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLG--MLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g--~l~~e~l~~L~~aGld~ 131 (320)
.++|+..+.++.+.+. ++-+-++. |.....=.+.++.+++. ++.+....- ......++.+.++|.|.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~--------~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~ 80 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGT--------PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADI 80 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCE
Confidence 6788999988888877 77775532 22222224555565542 444332211 12234578899999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++. .+...+.++.+++.|+++.+.+ ++ -.|.++... +...+ .+.+.+++-.. ++
T Consensus 81 i~~h~~~~------------~~~~~~~i~~~~~~g~~~~v~~-~~-~~t~~e~~~----~~~~~--~d~v~~~~~~~-~~ 139 (202)
T cd04726 81 VTVLGAAP------------LSTIKKAVKAAKKYGKEVQVDL-IG-VEDPEKRAK----LLKLG--VDIVILHRGID-AQ 139 (202)
T ss_pred EEEEeeCC------------HHHHHHHHHHHHHcCCeEEEEE-eC-CCCHHHHHH----HHHCC--CCEEEEcCccc-cc
Confidence 98865442 1223455677778887653321 22 346666654 33344 56665532110 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
+ .. .....+.+.+.... ++..+-..+ ++.++.-...+.+|++.+..|..+
T Consensus 140 ~-~~--~~~~~~~i~~~~~~-----~~~~i~~~G---GI~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 140 A-AG--GWWPEDDLKKVKKL-----LGVKVAVAG---GITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred c-cC--CCCCHHHHHHHHhh-----cCCCEEEEC---CcCHHHHHHHHhcCCCEEEEeehh
Confidence 1 11 12233332222221 333333333 233444467788999999888644
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=3.6 Score=35.28 Aligned_cols=120 Identities=11% Similarity=0.144 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+|+++.+.. ..-..++|+=-. +.-+| -....+.+-+.++.+++.|++++.=.. -+.++++.-++.|.|+
T Consensus 75 ~~em~~ia~~---~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~GAd~ 150 (239)
T PRK05265 75 TEEMLDIALE---VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEVGADR 150 (239)
T ss_pred CHHHHHHHHH---CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCE
Confidence 3566665554 334567775100 00011 013568899999999988988643322 5689999999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHH
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 186 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 186 (320)
|-+.-..+.+.+.. .....++++..+.+.+++.|+.+. .|+|-+.+.+..
T Consensus 151 VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~Vn----AGHgLny~Nv~~ 200 (239)
T PRK05265 151 IELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVN----AGHGLNYHNVKP 200 (239)
T ss_pred EEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHhHHH
Confidence 98765444221211 112246666777777777777664 568878777665
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.93 E-value=15 Score=31.89 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-CCCchhH---HHHH-----HHHHHhhh-cCceEE--E--eCCCCCH-HH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNF---NQIL-----EYVKDIRD-MGMEVC--C--TLGMLEK-HQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-~ge~~~~---~~l~-----~~i~~~k~-~~~~i~--~--~~g~l~~-e~ 120 (320)
-+.|+..+.++.+.+. ++-+-|+-....+ .+.|... ...+ +.++.+++ .++++. + ++-.... +.
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~ 93 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNF 93 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHH
Confidence 3678888888877666 8777775322222 1123222 2222 56777763 345532 1 3322334 44
Q ss_pred HHHHHHhccCeeccC---ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCC
Q 020848 121 AIELKKAGLTAYNHN---LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 121 l~~L~~aGld~v~i~---let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~ 197 (320)
++.++++|+|.+.+. +|+ .++..+.++.+++.|++.. +.+....+.+.+...+....
T Consensus 94 i~~~~~~Gadgvii~dlp~e~-------------~~~~~~~~~~~~~~Gl~~~--~~v~p~T~~e~l~~~~~~~~----- 153 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDY-------------PDDLEKYVEIIKNKGLKPV--FFTSPKFPDLLIHRLSKLSP----- 153 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCc-------------HHHHHHHHHHHHHcCCCEE--EEECCCCCHHHHHHHHHhCC-----
Confidence 899999999999884 222 2344577888999998752 34423434555555544321
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccccc-ChhHHHHHHHcCCceEeeCCccccC-
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLLTT- 275 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~-~~~~~~~~~~~Gan~~~~~~~~~~~- 275 (320)
.+-+..-. |+|- .. . .....+.+...|.+.++..+-+.. ++ .++.-.....+||+.++.|..+...
T Consensus 154 --~~l~msv~--~~~g-~~---~-~~~~~~~i~~lr~~~~~~~i~v~g---GI~~~e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 154 --LFIYYGLR--PATG-VP---L-PVSVERNIKRVRNLVGNKYLVVGF---GLDSPEDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred --CEEEEEeC--CCCC-CC---c-hHHHHHHHHHHHHhcCCCCEEEeC---CcCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 22222333 3442 11 1 333455666677766543333332 33 2333344568999999999755421
Q ss_pred CCCChhHHHHHHHH
Q 020848 276 PNNDFDADQLMFKV 289 (320)
Q Consensus 276 ~~~~~~~~~~~i~~ 289 (320)
...+.++..+.+++
T Consensus 222 ~~~~~~~~~~~~~~ 235 (244)
T PRK13125 222 EKNGVESALNLLKK 235 (244)
T ss_pred HhcCHHHHHHHHHH
Confidence 01225555555554
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=15 Score=31.95 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.+ .++.+.+.|+..+.+.+-.+-.+| .+ +.++.++ ...+++.......++.++.+-+.+|.|.|.+
T Consensus 61 ~d~~~---~A~~y~~~GA~aISVlTe~~~F~G---s~----~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 61 YHPVQ---IAKTYETLGASAISVLTDQSYFGG---SL----EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred CCHHH---HHHHHHHCCCcEEEEEcCCCcCCC---CH----HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 45544 445667789988877553233333 22 3344444 3467888888889999999999999999976
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
-.... +.++..+-++.++..|+.+ ++- -.+.+|+...+ +.+ +..++++.-. +
T Consensus 131 I~~~L-----------~~~~l~~l~~~a~~lGle~----LVE-Vh~~~El~~a~----~~g--a~iiGINnRd------L 182 (247)
T PRK13957 131 IVRIL-----------TPSQIKSFLKHASSLGMDV----LVE-VHTEDEAKLAL----DCG--AEIIGINTRD------L 182 (247)
T ss_pred EHhhC-----------CHHHHHHHHHHHHHcCCce----EEE-ECCHHHHHHHH----hCC--CCEEEEeCCC------C
Confidence 54322 3334566678888889875 332 23666665544 355 5566766532 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN 277 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~ 277 (320)
... ..+.... .....++|...+.++.+ ++....+...+..+++.+.+|+.++.+..
T Consensus 183 ~t~-~vd~~~~----~~L~~~ip~~~~~IsES--GI~t~~d~~~l~~~~davLvG~~lm~~~d 238 (247)
T PRK13957 183 DTF-QIHQNLV----EEVAAFLPPNIVKVGES--GIESRSDLDKFRKLVDAALIGTYFMEKKD 238 (247)
T ss_pred ccc-eECHHHH----HHHHhhCCCCcEEEEcC--CCCCHHHHHHHHHhCCEEEECHHHhCCCC
Confidence 211 2233332 22344667666665521 33333223334445899999986665443
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=5.5 Score=37.90 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|.. +.| -..-..+.++++.+| ..+++ ++.++ |+-....+. -.++|++
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D----t~G-~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~la-AieaGad 224 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD----MAG-ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLK-AIEAGAD 224 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCC-CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHH-HHHcCCC
Confidence 5788899999999999999999842 222 123355666677766 33444 44443 443444444 4588999
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
.|..++..+ +. ...-+.++++..++ ..|+++++
T Consensus 225 ~vD~sv~glg~g-----aGN~~tE~lv~~L~---~~g~~tgi 258 (448)
T PRK12331 225 IIDTAISPFAGG-----TSQPATESMVAALQ---DLGYDTGL 258 (448)
T ss_pred EEEeeccccCCC-----cCCHhHHHHHHHHH---hcCCCCCC
Confidence 998887665 22 11224555555553 34665433
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=88.89 E-value=16 Score=32.45 Aligned_cols=203 Identities=14% Similarity=0.064 Sum_probs=108.6
Q ss_pred CCCEEEEecccCC-CCCC----chhHHHHHHHHHHhh-hcCceEE--EeCCCCCH----HHHHHHHHhccCeeccCcccc
Q 020848 72 GSTRFCMGAAWRD-TIGR----KTNFNQILEYVKDIR-DMGMEVC--CTLGMLEK----HQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 72 g~~~i~l~~g~~~-~~ge----~~~~~~l~~~i~~~k-~~~~~i~--~~~g~l~~----e~l~~L~~aGld~v~i~let~ 139 (320)
|++.+.++|.+.. ..|. -..++++++.++.+. ...+++. ...| .+. ..+++|.++|+..+++-=++.
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~ 116 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLG 116 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCC
Confidence 8888887653211 1232 345778888887776 3466643 3456 443 347888999999888844433
Q ss_pred HHHHhhhCC-----CCCHHHHHHHHHHHHHcCCeeeeeEEEE-----eCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 140 REFYSKIIT-----TRSYDERLETLKHVREAGINVCSGGIIG-----LGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 140 ~~~~~~i~~-----~~~~~~~l~~i~~a~~~Gi~v~~~~i~G-----lget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
+.....+.. --+.++..+.|+.++++.-...+-++.. .+...++..+-.+...+.| .+.+.+ |
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG--AD~ifv----~- 189 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAG--ADGIMI----H- 189 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcC--CCEEEe----c-
Confidence 221111111 1367788888888776521111222222 1335677777777778888 555433 2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec-CCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL-SAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~-~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
+ ...+.+++.+..+..+..+|...+.+ .+...... . ...-..|.+.+..+.......-....+..+-+.
T Consensus 190 -~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~--~-~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 190 -S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTP--T-DEFRDAGISVVIYANHLLRAAYAAMQQVAERIL 259 (285)
T ss_pred -C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCC--H-HHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 1 12457777777776665555422222 21111111 1 223356899987765332222233455555555
Q ss_pred HcCC
Q 020848 289 VLGL 292 (320)
Q Consensus 289 ~~G~ 292 (320)
+.|-
T Consensus 260 ~~g~ 263 (285)
T TIGR02320 260 EHGR 263 (285)
T ss_pred HcCC
Confidence 5554
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=2.3 Score=38.91 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhc-cCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~ 133 (320)
+++++.++.++.+.+.|++-+.+.+|.......+..-....++.+.+|+ .++++..+.+..+.+.++++.+.| +|.|.
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 5788999988888888999998877642110000011113455566663 467777777777888888888876 88888
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 304 ~g 305 (337)
T PRK13523 304 IG 305 (337)
T ss_pred hh
Confidence 76
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.71 E-value=5.4 Score=34.98 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCCE-EEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc---cCe
Q 020848 59 DAVMQAAQKAKEAGSTR-FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG---LTA 131 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~-i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG---ld~ 131 (320)
+.+.+.++.+++.|..- +.+.... ....+++.++++.+.+.|.. +.-|.|.++++.+.+|.+.= ++.
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~------~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSH------MASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP 185 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecc------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC
Confidence 56677777778888632 2222111 12347788888887776654 34567888888877665441 111
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.+++ +...++.--+.+.-.+.++|.+.-=..+.|+|+
T Consensus 186 ~~l~~----------H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~ 223 (263)
T cd07943 186 TPVGF----------HGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA 223 (263)
T ss_pred ceEEE----------EecCCcchHHHHHHHHHHhCCCEEEeecccccC
Confidence 22322 223344444555555666788754445677754
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=88.65 E-value=15 Score=31.75 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeccc-CCCCCCchh-------------HHHHHHHHHHhhh-cCceE--EEe-CCCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAW-RDTIGRKTN-------------FNQILEYVKDIRD-MGMEV--CCT-LGML-- 116 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~-~~~~ge~~~-------------~~~l~~~i~~~k~-~~~~i--~~~-~g~l-- 116 (320)
+.+.+.+.++.+.+.|++.+.++--. .+....|.. .+...+.++.+++ ..+++ ++- +-.+
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 56889999999999999999886211 111111211 1367788888884 34442 222 1111
Q ss_pred -CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 117 -EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 117 -~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.++.++.++++|++.+.+.- -.+++..+.++.+++.|++.. +++...-+.+.+...+...
T Consensus 92 G~~~fi~~~~~aG~~giiipD-------------l~~ee~~~~~~~~~~~g~~~i--~~i~P~T~~~~i~~i~~~~---- 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD-------------LPPEEAEEFREAAKEYGLDLI--FLVAPTTPDERIKKIAELA---- 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC-------------CCHHHHHHHHHHHHHcCCcEE--EEeCCCCCHHHHHHHHhhC----
Confidence 26779999999999887731 124556677888899997652 2332232334344433221
Q ss_pred CCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 196 ~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
...+-+....| +|.-...-. ......+...|... +..+.+.. ++. ++.......+ |+.++.|..+
T Consensus 153 --~~~vy~~s~~g--~tG~~~~~~---~~~~~~i~~lr~~~-~~pI~vgg---GI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 153 --SGFIYYVSRTG--VTGARTELP---DDLKELIKRIRKYT-DLPIAVGF---GISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred --CCCEEEEeCCC--CCCCccCCC---hhHHHHHHHHHhcC-CCcEEEEc---cCCCHHHHHHHHcc-CCEEEECHHH
Confidence 23444444444 333221111 22334444455432 33333322 223 2222344555 8988888643
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.57 E-value=6.9 Score=37.59 Aligned_cols=119 Identities=19% Similarity=0.269 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+++.+.++.+.+.|++.+.+-.. .| .-..+.++++.+|+. ++.+..- ...+.+..+.|.++|+|.|.+++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a----~~---~~~~~~~~i~~ik~~~p~~~v~ag-nv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTA----HG---HQEKMLEALRAVRALDPGVPIVAG-NVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEecc----CC---ccHHHHHHHHHHHHHCCCCeEEee-ccCCHHHHHHHHHcCCCEEEECc
Confidence 46677788888899999887432 12 236788889999854 3444331 24789999999999999998766
Q ss_pred ccc----HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHH
Q 020848 137 DTS----REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 137 et~----~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 189 (320)
=+. -..+..... ..+.-+.+..+.+++.|+++-.. |--.+..|+.+.+.
T Consensus 298 g~gsictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 298 GPGAMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cCCcccccccccCCch-hHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 442 112222111 24555555556666666653211 22246777777664
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.6 Score=38.09 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.-++.++...+.|++.++++.= .+|++... ++++++.+.++++.+--|..+ +.++.+.++|+++|.++
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDL---dgg~~~n~----~~i~~i~~~~~~vqvGGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIML---GADDASLA----AALEALRAYPGGLQVGGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEEC---CCCCcccH----HHHHHHHhCCCCEEEeCCccH-HHHHHHHHcCCCEEEEc
Confidence 3455566677799999988742 12445453 334444334567778888775 99999999999999986
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=88.51 E-value=3.2 Score=34.81 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC----CCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g----~l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+-=. ..| ....+.+.++++.++ ++++..+-. .-..+.++.|.++|+++|.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~--~dg-~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALT--EDG-EIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRVL 145 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BE--TTS-SB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeEC--CCC-CcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEE
Confidence 3455666667778899998885321 112 245566666666665 555443321 1246678899999999886
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
-+
T Consensus 146 TS 147 (201)
T PF03932_consen 146 TS 147 (201)
T ss_dssp ES
T ss_pred CC
Confidence 53
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=88.27 E-value=7.2 Score=34.30 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhccCe-
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTA- 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aGld~- 131 (320)
-..+++.+.++.+++.|.. +.+..- ..+ + ...+.+.++++.+.+.|.. +.-|.|.++++.+.++.++=...
T Consensus 106 ~~~~~~~~~i~~ak~~G~~-v~~~~~-~a~-~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYE-VFFNLM-AIS-G--YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred ccHHHHHHHHHHHHHCCCe-EEEEEE-eec-C--CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 3578888888888888873 333211 111 1 3457788888888776654 45678999888887776551111
Q ss_pred ---eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 132 ---YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 132 ---v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.+++ +...++.--+.+...+.++|...--+.+.|+|+
T Consensus 181 ~~~~~i~~----------H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 181 DKDIKLGF----------HAHNNLQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred CCCceEEE----------EeCCCccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 22332 334456555666667778898865556778865
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=88.13 E-value=3.5 Score=37.30 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-----chhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHh-c
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA-G 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-----~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~a-G 128 (320)
.+.++.++.++.+.+.|++.+.+.++....... +.......+.++.+++ .++++..+.|..+.+.++++.+. |
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~ 304 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGK 304 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 467888888888888999888886654221100 0011334556666663 46778777777788888888887 6
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
+|.|.++
T Consensus 305 aD~V~ig 311 (327)
T cd02803 305 ADLVALG 311 (327)
T ss_pred CCeeeec
Confidence 8888876
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.08 E-value=6.5 Score=35.13 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh-HHHHHHHHHHhhhc--C-ce--EEEeCCCC-C----HHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRDM--G-ME--VCCTLGML-E----KHQAIEL 124 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~~k~~--~-~~--i~~~~g~l-~----~e~l~~L 124 (320)
.+..++...++.+.+.|++.|+..+|+.+.++.|.. +.+-.++++.+|.. + +. +..++..- . ...+..|
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~l 168 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRL 168 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHH
Confidence 688999999999999999999988877653333323 44566666666632 2 33 33333221 2 3344445
Q ss_pred H---HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 125 K---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 125 ~---~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
+ ++|.|++ ..+. -.+.+.+.+-.+.++++|+.
T Consensus 169 krKv~aGAd~~----------iTQ~--~fd~e~~~~~~~~~~~~g~~ 203 (291)
T COG0685 169 KRKVDAGADFF----------ITQF--FFDVEAFERFAERVRAAGID 203 (291)
T ss_pred HHHHhcchHHH----------HHHH--ccCHHHHHHHHHHHHhcCCC
Confidence 4 3444432 2222 24666677777778888864
|
|
| >PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ] | Back alignment and domain information |
|---|
Probab=88.06 E-value=3.7 Score=36.02 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCC-------HHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLE-------KHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~-------~e~l~~L~~aG 128 (320)
.++++.+ ..+.+.|+++|++++- +...| .-++++.+.++..+...-.+.+..-+|. .+.++++.++=
T Consensus 58 ~~~~eaL---~~L~~~G~~~V~VQpl-hiipG--~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL 131 (262)
T PF06180_consen 58 DSPEEAL---AKLADEGYTEVVVQPL-HIIPG--EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEAL 131 (262)
T ss_dssp --HHHHH---HHHHHCT--EEEEEE---SCSS--HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHCCCCEEEEeec-ceeCc--HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHH
Confidence 3455544 4556799999999865 33334 3566777777665532223433333343 77777776652
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHH-HHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHV-REAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a-~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.+.+.-.-+.-.-++-.....+........++.. .+.|.+ ++.+|.-|..-++.+.+..+++.+ +..|.+.||+
T Consensus 132 ~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~---~v~vgtvEG~P~~~~vi~~L~~~g--~k~V~L~PlM 206 (262)
T PF06180_consen 132 AEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYP---NVFVGTVEGYPSLEDVIARLKKKG--IKKVHLIPLM 206 (262)
T ss_dssp HCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-T---TEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEES
T ss_pred HHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCC---eEEEEEeCCCCCHHHHHHHHHhcC--CCeEEEEecc
Confidence 2222100000001122222233334455555553 344432 345555232334677777777776 7789999999
Q ss_pred ecCCC
Q 020848 208 AVKGT 212 (320)
Q Consensus 208 p~~gt 212 (320)
-+.|.
T Consensus 207 lVAGd 211 (262)
T PF06180_consen 207 LVAGD 211 (262)
T ss_dssp SS--H
T ss_pred cccch
Confidence 88864
|
Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.93 E-value=18 Score=31.68 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc-------------hhHHHHHHHHHHhhh--cCceE-E--EeCCCCC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRD--MGMEV-C--CTLGMLE 117 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~-------------~~~~~l~~~i~~~k~--~~~~i-~--~~~g~l~ 117 (320)
+++.-.+.++.+.+.|++-+-|+-...++. ..| ...+.+++.++.+++ .++++ . ..|-.+.
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 678888888888889999888864221111 112 123678888998884 34442 1 2222222
Q ss_pred ---HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 118 ---KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 118 ---~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
++.++.++++|++.+.+.-. .+++..+.++.+++.|+... +++...-+.+.+...++...
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl-------------p~ee~~~~~~~~~~~gl~~i--~lv~P~T~~eri~~i~~~~~-- 164 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL-------------PLEESGDLVEAAKKHGVKPI--FLVAPNADDERLKQIAEKSQ-- 164 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC-------------ChHHHHHHHHHHHHCCCcEE--EEECCCCCHHHHHHHHHhCC--
Confidence 67799999999999887532 34555677888899998652 34423334455555554321
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
..+.+.......|.. ... ..+....++..|...+.. +-+. .++. ++.......+||+.++.|..+
T Consensus 165 ----gfiy~vs~~G~TG~~----~~~-~~~~~~~i~~lr~~~~~p-i~vg---fGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 165 ----GFVYLVSRAGVTGAR----NRA-ASALNELVKRLKAYSAKP-VLVG---FGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred ----CCEEEEECCCCCCCc----ccC-ChhHHHHHHHHHhhcCCC-EEEe---CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 123333322222221 111 122455556666554332 2222 2233 344456678899999998644
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.91 E-value=15 Score=31.32 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC--CCCHHHHHHHHHhccCeeccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG--MLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g--~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+-+++.++.+++.|++.++++.-+ ..| ....+.+.++++....+++.+..--. .-..+.++.|.+.|+.+|.-+
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt--~dg-~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALT--ADG-NIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeec--CCC-ccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 3445666677788999999886532 112 35667777777766643332211000 114677999999999988764
Q ss_pred ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHH
Q 020848 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 190 (320)
Q Consensus 136 let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~ 190 (320)
= ...+..+-+..++.+.+.. +=.+.+|.|-|-+.+.+.++...
T Consensus 149 G-----------g~~sa~eg~~~l~~li~~a-~gri~Im~GaGV~~~N~~~l~~~ 191 (241)
T COG3142 149 G-----------GKASALEGLDLLKRLIEQA-KGRIIIMAGAGVRAENIAELVLL 191 (241)
T ss_pred C-----------CcCchhhhHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHh
Confidence 2 1223333344444443321 12345688888887777666543
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=7.2 Score=38.46 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEe--CCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCT--LGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~--~g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|-. +.| -..-..+.++++.+| ..+++ ++.+ .|.-....+. -.++|+|
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkD----taG-~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~la-AieaGad 224 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKD----MAG-LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYE-AVLAGCN 224 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----ccc-CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHH-HHHhCCC
Confidence 6899999999999999999999942 222 123356777777777 33554 3333 3433333343 4588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.+.
T Consensus 225 ~iD~ai~gl 233 (596)
T PRK14042 225 HIDTAISSF 233 (596)
T ss_pred EEEeccccc
Confidence 998887665
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=5.1 Score=34.49 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+++..=+.. .+.+... ++++++.+ ...++.+-.|..+.+.++++.++|++++.++-.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~----~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNE----MYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchH----HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 4455566667799999998653211 1333333 55555543 2236788889999999999999999999887655
Q ss_pred c--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-----EEEeC--CCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 139 S--REFYSKIITTRSYDERLETLKHVREAGINVCSGG-----IIGLG--EAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 139 ~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-----i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
. ++.++. ..+..-...+-+.+++ ++-.| ++.-++.+.++.+.+++ +..+-+... -.
T Consensus 106 ~~~p~~~~~------------~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g--~~~ii~tdI-~~ 170 (232)
T PRK13586 106 FTNFNLFHD------------IVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELE--LLGIIFTYI-SN 170 (232)
T ss_pred hCCHHHHHH------------HHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcC--CCEEEEecc-cc
Confidence 4 233322 2222211011122222 22112 22235667777788887 434333322 23
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.||. ..++.+- ++.+. .. +.. +-+++|-.+. .+. ......|++.++.|..+
T Consensus 171 dGt~----~G~d~el-~~~~~---~~-~~~-viasGGv~s~-~Dl-~~l~~~G~~gvivg~Al 221 (232)
T PRK13586 171 EGTT----KGIDYNV-KDYAR---LI-RGL-KEYAGGVSSD-ADL-EYLKNVGFDYIIVGMAF 221 (232)
T ss_pred cccC----cCcCHHH-HHHHH---hC-CCC-EEEECCCCCH-HHH-HHHHHCCCCEEEEehhh
Confidence 3553 2344442 33332 22 444 3345443332 232 23345699988877543
|
|
| >PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor | Back alignment and domain information |
|---|
Probab=87.58 E-value=7.1 Score=36.19 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHH
Q 020848 149 TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 228 (320)
Q Consensus 149 ~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~ 228 (320)
..++++..+..+.+++.|--+..-+-+ |+-.+|+..-++...+++ ++ .|+ +.|-||.. ..-..+.+.+.
T Consensus 202 aApldE~~~Va~~Akk~gkGveaI~~v--GDGyddLI~G~~a~id~~--vD-----vfV-vEGgPFN~-a~dRl~aFaka 270 (505)
T PF10113_consen 202 AAPLDEMEEVAELAKKYGKGVEAIMHV--GDGYDDLITGLKACIDMG--VD-----VFV-VEGGPFNR-AKDRLKAFAKA 270 (505)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEe--cCChHHHHHHHHHHHhcC--Cc-----EEE-EeCCCccc-chhHHHHHHHH
Confidence 347888899999999988555544444 677889999999999997 33 233 45777754 33446677888
Q ss_pred HHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC---C--ccc----c-C---CCCChhHHHHHHHHc-----
Q 020848 229 IATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG---E--KLL----T-T---PNNDFDADQLMFKVL----- 290 (320)
Q Consensus 229 ~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~---~--~~~----~-~---~~~~~~~~~~~i~~~----- 290 (320)
++.+|.+.|...+-.-+.+ ++.-..+|.+|-|.+++| + +|+ . + +.-....+.+++++.
T Consensus 271 Va~sRIL~pGkVVaTNGAY----EDEcRiGLRsGLN~iitGFp~NHHGYMcGYsPgtArRg~FGLPRV~~ImkeEv~~~~ 346 (505)
T PF10113_consen 271 VAASRILVPGKVVATNGAY----EDECRIGLRSGLNVIITGFPKNHHGYMCGYSPGTARRGNFGLPRVMKIMKEEVANGL 346 (505)
T ss_pred HHHheeeecCcEEecCCcc----hHHHHHHHhhccceeeccCCCCCcceeccCCCCccccccCCcHHHHHHHHHHHhcCC
Confidence 8999988887554322111 234467899999999665 1 122 1 1 112466677777664
Q ss_pred CCCcCCCC
Q 020848 291 GLTPKAPS 298 (320)
Q Consensus 291 G~~p~~~~ 298 (320)
...|++|+
T Consensus 347 ~~~p~~k~ 354 (505)
T PF10113_consen 347 TPVPAQKE 354 (505)
T ss_pred CcccccHH
Confidence 45555554
|
Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=87.24 E-value=20 Score=31.46 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
++.+.++.+...|+..+.+.+-....+| =.+.++.++ ..++++....-..++-++...+++|.|.|.+....
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g-------~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQG-------SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCC-------CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 4556667777789988876543222223 244455555 34677766555577889999999999999986533
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
. +.++..+.++.+++.|+.+ ++-. .+.+|+.. +.++| ++.+.++.. .+...
T Consensus 144 l-----------~~~~l~~li~~a~~lGl~~----lvev-h~~~E~~~----A~~~g--adiIgin~r------dl~~~- 194 (260)
T PRK00278 144 L-----------DDEQLKELLDYAHSLGLDV----LVEV-HDEEELER----ALKLG--APLIGINNR------NLKTF- 194 (260)
T ss_pred C-----------CHHHHHHHHHHHHHcCCeE----EEEe-CCHHHHHH----HHHcC--CCEEEECCC------Ccccc-
Confidence 2 2245567778888888654 3322 25556533 44666 666665421 11111
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeecCCccccc-ChhHHHHHHHcCCceEeeCCccc
Q 020848 219 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 219 ~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~-~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.++.+... .+.+ .+|.....++-| ++ .++.......+|++.+..|..+.
T Consensus 195 ~~d~~~~~---~l~~-~~p~~~~vIaeg--GI~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 195 EVDLETTE---RLAP-LIPSDRLVVSES--GIFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred cCCHHHHH---HHHH-hCCCCCEEEEEe--CCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 22333222 2222 345432233211 22 23444567788999999987554
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.15 E-value=22 Score=32.64 Aligned_cols=127 Identities=18% Similarity=0.101 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCC--chhHHHHHHHHHHhhhcCceEE--Ee----CCCCC--HHHHHHHHHhccCe
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGR--KTNFNQILEYVKDIRDMGMEVC--CT----LGMLE--KHQAIELKKAGLTA 131 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge--~~~~~~l~~~i~~~k~~~~~i~--~~----~g~l~--~e~l~~L~~aGld~ 131 (320)
++.++.+.+.|++.|+++......-+. ....+++.+.++.+++.|.++. +| ++.+. .+.++.|.+.|+|.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCE
Confidence 444566667899999987531111111 2566889999999998887632 22 22223 57789999999999
Q ss_pred eccCcccc----HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHH
Q 020848 132 YNHNLDTS----REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 191 (320)
Q Consensus 132 v~i~let~----~~~~~~i~~---~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l 191 (320)
|-++-=+. .+.+..+.- ....-.-.++++.+++.|... ++.-..-+.+++.++.+.+
T Consensus 96 viv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~r---vVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 96 VIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKR---VVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred EEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEE---EEeCccCCHHHHHHHHHhC
Confidence 98763222 222211111 111122247788899998542 1221244777777777665
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=87.11 E-value=7.2 Score=32.25 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred HHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHH
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFY 143 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~ 143 (320)
++.+.+.|++-+.+-...+ +.. +.+.++++.+|+.+..++.. ..+.|+...-.++|+|.|.-.+-++ +..-
T Consensus 57 v~~l~~aGadIIAlDaT~R-----~Rp-~~l~~li~~i~~~~~l~MAD--ist~ee~~~A~~~G~D~I~TTLsGYT~~t~ 128 (192)
T PF04131_consen 57 VDALAEAGADIIALDATDR-----PRP-ETLEELIREIKEKYQLVMAD--ISTLEEAINAAELGFDIIGTTLSGYTPYTK 128 (192)
T ss_dssp HHHHHHCT-SEEEEE-SSS-----S-S-S-HHHHHHHHHHCTSEEEEE---SSHHHHHHHHHTT-SEEE-TTTTSSTTST
T ss_pred HHHHHHcCCCEEEEecCCC-----CCC-cCHHHHHHHHHHhCcEEeee--cCCHHHHHHHHHcCCCEEEcccccCCCCCC
Confidence 4455668998888865322 222 77888888998766444443 3567888899999999999988887 5432
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHH
Q 020848 144 SKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 144 ~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 188 (320)
. .+.+ ++.++.+.+.++++ +.=|.-.++++..+.+
T Consensus 129 ~---~~pD----~~lv~~l~~~~~pv---IaEGri~tpe~a~~al 163 (192)
T PF04131_consen 129 G---DGPD----FELVRELVQADVPV---IAEGRIHTPEQAAKAL 163 (192)
T ss_dssp T---SSHH----HHHHHHHHHTTSEE---EEESS--SHHHHHHHH
T ss_pred C---CCCC----HHHHHHHHhCCCcE---eecCCCCCHHHHHHHH
Confidence 2 1223 35566666666552 2224446777766655
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=87.10 E-value=1.7 Score=37.26 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
-+|.+ .++.+.+.|++.+++..=+....| ...-.++++.+. ..++++.+-.|..+.+.+++|.++|++++.+
T Consensus 29 ~dP~~---~a~~~~~~g~~~l~ivDLdaa~~g----~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 29 GDPVE---VAKAFNEQGADELHIVDLDAAKEG----RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCHHH---HHHHHHHTT-SEEEEEEHHHHCCT----HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEE
T ss_pred cCHHH---HHHHHHHcCCCEEEEEEccCcccC----chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEe
Confidence 34544 445556789999998642211112 234445666665 4578899999999999999999999999999
Q ss_pred Ccccc--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE-----eCCC---HHHHHHHHHHHhcCCCCCCeeeee
Q 020848 135 NLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-----LGEA---EEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 135 ~let~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G-----lget---~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
+-++. ++.. .+..+..-...+-+.+++--| .+.. .-+..+.++.+.+++ +..+-+
T Consensus 102 gt~~~~~~~~l------------~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~- 166 (229)
T PF00977_consen 102 GTEALEDPELL------------EELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELG--AGEIIL- 166 (229)
T ss_dssp SHHHHHCCHHH------------HHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT---SEEEE-
T ss_pred ChHHhhchhHH------------HHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcC--CcEEEE-
Confidence 86554 1222 222222222122233333333 2322 245788888889887 555533
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
.-+...||.. .++.+ +++.+ +... +..+-.++|-.+. .+. ......|++.++.|.
T Consensus 167 tdi~~dGt~~----G~d~~-~~~~l---~~~~-~~~viasGGv~~~-~Dl-~~l~~~G~~gvivg~ 221 (229)
T PF00977_consen 167 TDIDRDGTMQ----GPDLE-LLKQL---AEAV-NIPVIASGGVRSL-EDL-RELKKAGIDGVIVGS 221 (229)
T ss_dssp EETTTTTTSS----S--HH-HHHHH---HHHH-SSEEEEESS--SH-HHH-HHHHHTTECEEEESH
T ss_pred eeccccCCcC----CCCHH-HHHHH---HHHc-CCCEEEecCCCCH-HHH-HHHHHCCCcEEEEeh
Confidence 2233446543 23332 23222 2222 2333344443222 232 334478888887775
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=86.80 E-value=11 Score=34.28 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchh-----HHHHHHHHHHhhhcCc-eE-EEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTN-----FNQILEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-----~~~l~~~i~~~k~~~~-~i-~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.++...+.|++.+.+..+...... |.. .+.+.++++.+++.|. .+ .-+.|. ....+..|++.|+|.++++
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~is-p~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~-~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLIS-PEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN-TTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS--HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH-G-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCcccccccccCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc-hHHHHHHHHhcCCCEEEEc
Confidence 3344555789988877653222222 322 3557777778887666 53 344564 3448999999999987774
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=86.77 E-value=7 Score=35.70 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHH
Q 020848 92 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELK 125 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~ 125 (320)
.+++.++++.+.+.|.. +.-|.|.++++.+.++.
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v 179 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRV 179 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHH
Confidence 35555555555544433 23345555555554443
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=86.69 E-value=5.8 Score=36.04 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC---------------CCCCchhHHHHHHHHHHhhh-c--CceEEEeCCCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~---------------~~ge~~~~~~l~~~i~~~k~-~--~~~i~~~~g~l~ 117 (320)
.+.+++.+.++.+.+.|++.|.+.+.... ..| +...+.-++.++.+++ . ++++..+.|..+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG-~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG-APLKERSTEVLRELYKLTGGKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC-hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 45568888888888899999887653110 011 2233445677777763 3 577888889999
Q ss_pred HHHHHHHHHhccCeeccC
Q 020848 118 KHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.++..+|.|.|.++
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 999888888999998886
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=86.59 E-value=25 Score=32.01 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhh-hcCceEEEeCCCCCH----HHHHHHHHhccCeeccCccccHHHHhhhCCCCCH-HHHHHHHHHHHHc
Q 020848 92 FNQILEYVKDIR-DMGMEVCCTLGMLEK----HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSY-DERLETLKHVREA 165 (320)
Q Consensus 92 ~~~l~~~i~~~k-~~~~~i~~~~g~l~~----e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~-~~~l~~i~~a~~~ 165 (320)
.+.+.+.++.++ +.+.++.++.+..+. +.++.+.++|+|.+.+.+-..+. ..... +.+. +.+.+.++.+++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~~~ 163 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVKSA 163 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHHhc
Confidence 456666666665 345565555433332 55667778899988886632111 01111 2223 3355666666653
Q ss_pred -CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC------CCCCC--C-CCCCHHHHHHHHHHHHHh
Q 020848 166 -GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG------TPLQD--Q-KPVEIWEMIRMIATARIV 235 (320)
Q Consensus 166 -Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g------t~~~~--~-~~~~~~e~~~~~a~~R~~ 235 (320)
.+++.+.+ .....++.++.+.+.+.| ++.|.+..-.+... .+... . .+......++.+...+..
T Consensus 164 ~~iPV~vKl----~p~~~~~~~~a~~l~~~G--~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~ 237 (334)
T PRK07565 164 VSIPVAVKL----SPYFSNLANMAKRLDAAG--ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR 237 (334)
T ss_pred cCCcEEEEe----CCCchhHHHHHHHHHHcC--CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh
Confidence 44443332 223346778888888888 66665543222110 00000 0 111112234444444333
Q ss_pred CCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC----CChhHHHHHHHHcCCCc
Q 020848 236 MPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN----NDFDADQLMFKVLGLTP 294 (320)
Q Consensus 236 ~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~----~~~~~~~~~i~~~G~~p 294 (320)
.. ..+-..+|-. ........+.+||+.+..+..++..+- .=.+++.+.+.+.|+.-
T Consensus 238 ~~-ipIig~GGI~--s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 238 VG-ADLAATTGVH--DAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred cC-CCEEEECCCC--CHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCCCC
Confidence 32 1122222221 223345667899999877654443221 12455667777778743
|
|
| >PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.50 E-value=11 Score=33.25 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-------CCchhHHHHHHHHHHhhhcCceE--EEeCCC---------CC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-------GRKTNFNQILEYVKDIRDMGMEV--CCTLGM---------LE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-------ge~~~~~~l~~~i~~~k~~~~~i--~~~~g~---------l~ 117 (320)
.+.+...+.++.+.++|+..+++-.|+.... -.+..-.++.++++..|+.|+.+ ..+... -.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 7899999999999999999999976764210 01223467999999999877653 333211 12
Q ss_pred HHHHHHHHHhccCeeccCc-ccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeee
Q 020848 118 KHQAIELKKAGLTAYNHNL-DTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~l-et~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
++.++.+++.|+..|-++. ++- .+. ..-..+.++.|.+.++-|..|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~~~d~Q~~---------v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFMDRDDQEM---------VNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE--SSTSHHH---------HHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHcCCCEEeeCcCCCCCHHH---------HHHHHHHHHHHHHcCcEEEec
Confidence 8889999999999988863 332 111 233356677788877665554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=86.40 E-value=19 Score=30.48 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++++.+.++..+|+. |.+.+...+.+ +..++.+.+- .|..+ ..+.++..++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~---------p~~v~~a~~~l---~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN---------PSYVPLAKELL---KGTEVRICTVVGFPLGASTTDVKLYETKEAIKY 82 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC---------HHHHHHHHHHc---CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 789999999999999999999873 44444444433 3335554332 23322 3345556667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeC-CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG-EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glg-et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.|.+.+-+.-. .+ ..++++.+.+-+....+. |+.+.+ |+-.+ -+.+++....+.+.+.| .+.|...
T Consensus 83 GAdEiDvv~n~g-----~l-~~g~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaG--ADfvKTs 152 (211)
T TIGR00126 83 GADEVDMVINIG-----AL-KDGNEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAG--ADFVKTS 152 (211)
T ss_pred CCCEEEeecchH-----hh-hCCcHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhC--CCEEEeC
Confidence 988887765321 11 245677777777776653 555554 44332 46688888889999998 6665542
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|-+.. ...+.++...+....+ ....+..++|--. .......+.+|++++
T Consensus 153 -------TGf~~-~gat~~dv~~m~~~v~---~~v~IKaaGGirt--~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 153 -------TGFGA-GGATVEDVRLMRNTVG---DTIGVKASGGVRT--AEDAIAMIEAGASRI 201 (211)
T ss_pred -------CCCCC-CCCCHHHHHHHHHHhc---cCCeEEEeCCCCC--HHHHHHHHHHhhHHh
Confidence 12211 2345555333333222 2344555554322 223345667888876
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=28 Score=33.12 Aligned_cols=123 Identities=10% Similarity=-0.004 Sum_probs=70.8
Q ss_pred HHHHHHcCCCEEEEecccCCCC--CCchhHHHHHHHHHHhhhcCceEEEe-CCCCCHHH-------HHHHHHhccCeecc
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTI--GRKTNFNQILEYVKDIRDMGMEVCCT-LGMLEKHQ-------AIELKKAGLTAYNH 134 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~--ge~~~~~~l~~~i~~~k~~~~~i~~~-~g~l~~e~-------l~~L~~aGld~v~i 134 (320)
++.+.+.|++.|++++.....- ..+...+++.+.++.+++.|.++.++ |....++. ++.|.++|+|.|.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4455668999999975321110 11345588999999998888885443 44443333 57777889998877
Q ss_pred CccccHHHHhhhCCC----CCH---HHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHH
Q 020848 135 NLDTSREFYSKIITT----RSY---DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 190 (320)
Q Consensus 135 ~let~~~~~~~i~~~----~~~---~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~ 190 (320)
+-=+.-...+...+. .++ -.-..+++.+.+.|+. .+++...-|.+++.++.+.
T Consensus 96 ~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~---rvvLSrELsl~EI~~i~~~ 155 (443)
T PRK15452 96 SDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLT---RVILSRELSLEEIEEIRQQ 155 (443)
T ss_pred cCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCc---EEEECCcCCHHHHHHHHhh
Confidence 522211111221110 011 1114677888888874 1344345588888877644
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=86.35 E-value=23 Score=31.46 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhh-cCceEEEeCCCC----CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 020848 93 NQILEYVKDIRD-MGMEVCCTLGML----EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 165 (320)
Q Consensus 93 ~~l~~~i~~~k~-~~~~i~~~~g~l----~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~- 165 (320)
+.+++.++..++ .+.++.++.+-. -.+.++.+.++|+|.|.+.+-+. .... .-.-..+.+...+.++.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~ 153 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKAT 153 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhcc
Confidence 444554544442 344443443222 23446666777888887765432 1100 000124566666777777765
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee-----------ecCCCCCCCCC-CCCHHHHHHHHHHHH
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL-----------AVKGTPLQDQK-PVEIWEMIRMIATAR 233 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~-----------p~~gt~~~~~~-~~~~~e~~~~~a~~R 233 (320)
++++.+- ++-+.++..++++.+.+.| ++.+.+..-. |..+....... +......++.+...+
T Consensus 154 ~~Pv~vK----l~~~~~~~~~~a~~~~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~ 227 (296)
T cd04740 154 DVPVIVK----LTPNVTDIVEIARAAEEAG--ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY 227 (296)
T ss_pred CCCEEEE----eCCCchhHHHHHHHHHHcC--CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH
Confidence 5554333 2334457888888888888 5655543211 11111001111 111111234444444
Q ss_pred HhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC---CChhHHHHHHHHcCCCc
Q 020848 234 IVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN---NDFDADQLMFKVLGLTP 294 (320)
Q Consensus 234 ~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~---~~~~~~~~~i~~~G~~p 294 (320)
...+-..+ ..|-+. .+......+.+||+.+..+..++..+. .-.++..+.+.+.||.-
T Consensus 228 ~~~~ipii--~~GGI~-~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~ 288 (296)
T cd04740 228 KAVEIPII--GVGGIA-SGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKS 288 (296)
T ss_pred HhcCCCEE--EECCCC-CHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 33321122 222221 234446677899998887765544111 12444556677777753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=86.05 E-value=16 Score=33.54 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCHHHHHHHH----HHHHHcCCCE-EEEec-ccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAA----QKAKEAGSTR-FCMGA-AWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~----~~~~~~g~~~-i~l~~-g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
++.+|+++.+ +.+++.|..- ..+.. .+.+..+ ....+.+.++++.+.+.|.. +.-|.|.+++..+.+|.+
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~-r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~ 233 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG-PVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLE 233 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC-CCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHH
Confidence 5677777644 4555667543 22321 1122222 35678899999988877754 456788888888777755
Q ss_pred hccCee---ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 127 AGLTAY---NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 127 aGld~v---~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.=.+.+ .++ ++...++..-+.+.-.+.++|...--..+-|+|+
T Consensus 234 ~l~~~~~~~~i~----------~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGe 279 (347)
T PLN02746 234 AVMAVVPVDKLA----------VHFHDTYGQALANILVSLQMGISTVDSSVAGLGG 279 (347)
T ss_pred HHHHhCCCCeEE----------EEECCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 411111 111 1334455566677777888898855555677765
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=6.6 Score=33.70 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.++.+.. .+. ++.+++..-+....|.+..+ ++++.+. ..++++.+..|..+.+.++.|.++|++.+.++
T Consensus 31 dp~~~a~~~---~~~-~~~l~ivDldga~~g~~~n~----~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIALRF---SEY-VDKIHVVDLDGAFEGKPKNL----DVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHHHH---HHh-CCEEEEEECcchhcCCcchH----HHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 555555544 344 78887754211111322333 3444443 35678889999999999999999999999887
Q ss_pred cccc
Q 020848 136 LDTS 139 (320)
Q Consensus 136 let~ 139 (320)
-.++
T Consensus 103 taa~ 106 (228)
T PRK04128 103 TKAF 106 (228)
T ss_pred chhc
Confidence 5443
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=85.92 E-value=8.6 Score=33.61 Aligned_cols=109 Identities=19% Similarity=0.273 Sum_probs=61.7
Q ss_pred CCHHHHH----HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVM----QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~----~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.++++ +.++.+++.|. .+.++. ...+ ....+++.++++.+.+.|.. +.-|.|.++++.+.+|...=
T Consensus 103 ~~~~~~~~~~~~~i~~a~~~G~-~v~~~~---~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 103 KDRAWVLDQLRRLVGRAKDRGL-FVSVGA---EDAS-RADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEee---ccCC-CCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4555554 45556666776 454432 1111 23567888888887766654 44567888888877665541
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.+. +.+++ +...++.--+.+.-.+.++|.+.-=..+.|+|+
T Consensus 178 ~~~~~~~l~~----------H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~ 220 (259)
T cd07939 178 RAATDLPLEF----------HAHNDLGLATANTLAAVRAGATHVSVTVNGLGE 220 (259)
T ss_pred HHhcCCeEEE----------EecCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 111 22222 223344444555556667888754445777765
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=85.91 E-value=9 Score=33.87 Aligned_cols=125 Identities=19% Similarity=0.190 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCCEE-EEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhccCe-
Q 020848 57 TKDAVMQAAQKAKEAGSTRF-CMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTA- 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i-~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aGld~- 131 (320)
+.+.+.+.++.+++.|..-. .+.... +.....+.+.++++.+.+.|.. +.-|.|.++++.+..+.+.=...
T Consensus 116 ~~~~~~~~i~~ak~~G~~v~~~i~~~~----~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 116 DVRNLEVAIKAVKKAGKHVEGAICYTG----SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEecC----CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 45777777788888885322 222100 1123457777777777766644 34567888877776664441111
Q ss_pred -eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC--HHHHHHHHHHHhcCC
Q 020848 132 -YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA--EEDRVGLLHTLATLP 195 (320)
Q Consensus 132 -v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget--~ed~~~~l~~l~~l~ 195 (320)
+.+++ +...++.--+.+...+.++|.+.--..+.|+|+- .-.+++++..+...+
T Consensus 192 ~~~l~~----------H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g 248 (275)
T cd07937 192 GLPIHL----------HTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTG 248 (275)
T ss_pred CCeEEE----------EecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccC
Confidence 22222 2233444445555566677887544456677542 224455555555554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=85.83 E-value=27 Score=31.73 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-----------------CCc---------hhHHHHHHHHHHhhhcCceEE
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----------------GRK---------TNFNQILEYVKDIRDMGMEVC 110 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----------------ge~---------~~~~~l~~~i~~~k~~~~~i~ 110 (320)
+.+...+.++.+.+.|++.|.||.-..... ++. +..++..++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 678889999999999999888874211110 000 011223344444445677765
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLH 189 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~ 189 (320)
+++ ++.+.++.|.+.|++.+.++= +.-+. +.-++.+.+.|.++ ++.. .-+.+|+...++
T Consensus 95 stp--fd~~svd~l~~~~v~~~KI~S-----------~~~~n---~~LL~~va~~gkPv----ilstG~~t~~Ei~~Av~ 154 (327)
T TIGR03586 95 SSP--FDETAVDFLESLDVPAYKIAS-----------FEITD---LPLIRYVAKTGKPI----IMSTGIATLEEIQEAVE 154 (327)
T ss_pred Ecc--CCHHHHHHHHHcCCCEEEECC-----------ccccC---HHHHHHHHhcCCcE----EEECCCCCHHHHHHHHH
Confidence 543 677788888888887776641 00011 34456666667664 3323 248999999999
Q ss_pred HHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 190 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 190 ~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++.+-| ...+.+..- ..+ + |.+...--++.+..++..++ ..+-++. . ..+......++..||..+
T Consensus 155 ~i~~~g--~~~i~LlhC--~s~---Y--P~~~~~~nL~~i~~lk~~f~-~pVG~SD-H-t~G~~~~~aAva~GA~iI 219 (327)
T TIGR03586 155 ACREAG--CKDLVLLKC--TSS---Y--PAPLEDANLRTIPDLAERFN-VPVGLSD-H-TLGILAPVAAVALGACVI 219 (327)
T ss_pred HHHHCC--CCcEEEEec--CCC---C--CCCcccCCHHHHHHHHHHhC-CCEEeeC-C-CCchHHHHHHHHcCCCEE
Confidence 998877 333444321 111 1 11112223455666665553 1221221 0 111233456778899855
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.82 E-value=6.8 Score=34.75 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC---------------CC--CchhHHHHHHHHHHhh-hc--CceEEEeCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT---------------IG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGM 115 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~---------------~g--e~~~~~~l~~~i~~~k-~~--~~~i~~~~g~ 115 (320)
.+.+++.+.++.+.+.|++.+.+.++.... .| .+...+.-++.++.++ .. ++++..+.|.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI 252 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI 252 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 567788999998889999988876432110 00 0111233466777776 34 6788888899
Q ss_pred CCHHHHHHHHHhccCeeccC
Q 020848 116 LEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 116 l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.+.++..+|.|.|.++
T Consensus 253 ~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCHHHHHHHHHcCccHheEc
Confidence 99899888889999988875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=85.79 E-value=5 Score=33.98 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=6.2
Q ss_pred CCeeEEEEEeec
Q 020848 17 MEEVQQCTLLSI 28 (320)
Q Consensus 17 ~~~v~~~~~l~~ 28 (320)
+..+.+++.++.
T Consensus 51 ~~~v~v~tVigF 62 (211)
T TIGR00126 51 GTEVRICTVVGF 62 (211)
T ss_pred CCCCeEEEEeCC
Confidence 344555555553
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=85.60 E-value=9.2 Score=37.70 Aligned_cols=101 Identities=16% Similarity=0.257 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|-. +.| -..-..+.++++.+|+ .+++ +++++ |+-....+. -.++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~D----t~G-~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~la-AveaGa~ 219 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKD----MAG-ILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLK-AIEAGAD 219 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----CCC-CcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 4788999999999999999999842 222 1233556777777763 3433 44443 443444444 4588999
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
.|..++.+. .. ...-+.+.++..++ ..|++++
T Consensus 220 ~vd~ai~GlG~~-----tGn~~le~vv~~L~---~~g~~tg 252 (582)
T TIGR01108 220 GIDTAISSMSGG-----TSHPPTETMVAALR---GTGYDTG 252 (582)
T ss_pred EEEecccccccc-----ccChhHHHHHHHHH---hcCCCcc
Confidence 999888776 31 11235555555554 3455543
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.47 E-value=21 Score=30.16 Aligned_cols=194 Identities=15% Similarity=0.071 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCC--HHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE--KHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~--~e~l~~L~~aGl 129 (320)
..++.++.++.++.+.+. +.-+-++ -|+...+=++.++.+|+. +-.+.......+ .=..+...++|.
T Consensus 11 D~~~l~~Ai~~a~~v~~~-~diiEvG--------TpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGA 81 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY-VDIIEVG--------TPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGA 81 (217)
T ss_pred cccCHHHHHHHHHHhhhc-ceEEEeC--------cHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCC
Confidence 347888988888877666 4334332 266666666888888854 222333333332 345677789999
Q ss_pred CeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 130 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|.+.+.- -.+.+...++++.+++.|..+-++++- .. +..+-.++++++| ++.+-++.=+-
T Consensus 82 d~~tV~g------------~A~~~TI~~~i~~A~~~~~~v~iDl~~--~~---~~~~~~~~l~~~g--vd~~~~H~g~D- 141 (217)
T COG0269 82 DWVTVLG------------AADDATIKKAIKVAKEYGKEVQIDLIG--VW---DPEQRAKWLKELG--VDQVILHRGRD- 141 (217)
T ss_pred CEEEEEe------------cCCHHHHHHHHHHHHHcCCeEEEEeec--CC---CHHHHHHHHHHhC--CCEEEEEeccc-
Confidence 9998842 345666788999999999887766553 22 4555666677787 66655543221
Q ss_pred CCCCCCCCCCCCH-HHHHHHHHHHHHhCC-CceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 210 KGTPLQDQKPVEI-WEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 210 ~gt~~~~~~~~~~-~e~~~~~a~~R~~~p-~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
.+. ...+. .+.+..+ +.... ...+.+++ ++.++.-......|+.-++.|. ..| +..++.+..+.+
T Consensus 142 ----~q~-~G~~~~~~~l~~i---k~~~~~g~~vAVaG---GI~~~~i~~~~~~~~~ivIvGr-aIt-~a~dp~~~a~~~ 208 (217)
T COG0269 142 ----AQA-AGKSWGEDDLEKI---KKLSDLGAKVAVAG---GITPEDIPLFKGIGADIVIVGR-AIT-GAKDPAEAARKF 208 (217)
T ss_pred ----Hhh-cCCCccHHHHHHH---HHhhccCceEEEec---CCCHHHHHHHhcCCCCEEEECc-hhc-CCCCHHHHHHHH
Confidence 111 11112 2222222 22222 23444444 3445544555667777777786 433 334566666665
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 209 ~~ 210 (217)
T COG0269 209 KE 210 (217)
T ss_pred HH
Confidence 54
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.45 E-value=22 Score=31.16 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=9.9
Q ss_pred HHHHHHHHHhccCeecc
Q 020848 118 KHQAIELKKAGLTAYNH 134 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i 134 (320)
++.+++++++|+|.+-+
T Consensus 112 e~F~~~~~~~GvdGliv 128 (265)
T COG0159 112 EKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 33466666666666554
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=30 Score=31.77 Aligned_cols=185 Identities=12% Similarity=0.207 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCC---CC-CchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT---IG-RKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~---~g-e~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
+.|++++.++.+++.|++-+ ..|...+- ++ .... ++=++++++++ +.|+.+.++ ..+.+.++.+.+. +|.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~-r~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~te--v~d~~~v~~~~~~-~d~ 187 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFL-RGGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITE--VMDAADLEKIAEV-ADV 187 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EeeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEe--eCCHHHHHHHHhh-CCe
Confidence 67899999999888887543 33332221 11 0012 45566666666 678887554 4778888888887 888
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.++--.. .+ ...++.+.+.|..+. +=-|..-+.+|+...++++..-| ...+.+.. -|
T Consensus 188 lqIga~~~----------~n----~~LL~~va~t~kPVl--lk~G~~~t~ee~~~A~e~i~~~G--n~~viL~e----rG 245 (352)
T PRK13396 188 IQVGARNM----------QN----FSLLKKVGAQDKPVL--LKRGMAATIDEWLMAAEYILAAG--NPNVILCE----RG 245 (352)
T ss_pred EEECcccc----------cC----HHHHHHHHccCCeEE--EeCCCCCCHHHHHHHHHHHHHcC--CCeEEEEe----cC
Confidence 88763111 12 233556666665541 11233458999999999998877 33444422 13
Q ss_pred C-CCC-CCCCCCHHHHHHHHHHHHHhCCCcee-e--cCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 212 T-PLQ-DQKPVEIWEMIRMIATARIVMPKAMV-R--LSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 212 t-~~~-~~~~~~~~e~~~~~a~~R~~~p~~~i-~--~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
+ .+. ..+..+ -.++.+..++....-..+ - .+.|+..+.+.....++.+||+.++...
T Consensus 246 ~rtf~s~y~~~~--~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 246 IRTFDRQYTRNT--LDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred CccCcCCCCCCC--cCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 2 111 111111 113444445544322111 1 1235544445666778889999887653
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=85.33 E-value=22 Score=30.21 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeC------CC--CCH----HHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTL------GM--LEK----HQAI 122 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~------g~--l~~----e~l~ 122 (320)
.+.+++++.++.+...|++-|-+= ..+-.......+.+.+..++ ..++++.+|. |. .++ +.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElR----lD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~ 82 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELR----LDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLE 82 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEE----GGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEE----eccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHH
Confidence 478899999998888788877662 11111234577888888887 4477765543 32 233 3344
Q ss_pred HHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-EEEeCCCHHHHHHHHHHHhcCCCCCCee
Q 020848 123 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG-IIGLGEAEEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 123 ~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-i~Glget~ed~~~~l~~l~~l~~~~~~v 201 (320)
.+.+.|++.|-+.++..++. ......++..+.++-... -+....+.+++.+.++.+.++| ++.+
T Consensus 83 ~~~~~~~d~iDiE~~~~~~~-------------~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~g--adiv 147 (224)
T PF01487_consen 83 RAIRLGPDYIDIELDLFPDD-------------LKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELG--ADIV 147 (224)
T ss_dssp HHHHHTSSEEEEEGGCCHHH-------------HHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT---SEE
T ss_pred HHHHcCCCEEEEEcccchhH-------------HHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcC--CCeE
Confidence 55566788887776644221 222445566666632222 2222346666888888888887 5555
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
.+-. .+.++ .+...+++.....+.......+-++
T Consensus 148 Kia~---~~~~~------~D~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 148 KIAV---MANSP------EDVLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp EEEE---E-SSH------HHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred EEEe---ccCCH------HHHHHHHHHHHHHhhccCCcEEEEE
Confidence 5432 22222 2345567777766665333444443
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=9.6 Score=36.44 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|+..|+|.. +.| -..-..+.++++.+| ..+++ ++.++ |.-....+. -.++|++
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D----t~G-~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~la-AieaGad 223 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD----MAG-LLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLA-AVEAGAD 223 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----ccC-CcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 4788999999999999999999842 222 123355666777776 33443 44443 443444444 4588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++..+
T Consensus 224 ~vD~sv~~~ 232 (467)
T PRK14041 224 MFDTAISPF 232 (467)
T ss_pred EEEeecccc
Confidence 998887654
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=85.30 E-value=25 Score=30.81 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc-------------hhHHHHHHHHHHhh-hc-CceE-EEe--CCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIR-DM-GMEV-CCT--LGM-- 115 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~-------------~~~~~l~~~i~~~k-~~-~~~i-~~~--~g~-- 115 (320)
+++.-++.++.+.+.|++-+-|+-...++. ..| ...+.++++++.++ +. .+++ ..+ |-.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 678888999998999998877763222222 112 23466788888888 32 4553 222 111
Q ss_pred -CCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 116 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 116 -l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
-.++.+++++++|+|.+-+. .-.+++..+..+.+.+.|+.. -.++- ..|.++..+.+....
T Consensus 102 ~G~e~F~~~~~~aGvdGlIip-------------DLP~ee~~~~~~~~~~~gl~~--I~lv~-p~t~~~Ri~~i~~~a-- 163 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLIIP-------------DLPPEESEELREAAKKHGLDL--IPLVA-PTTPEERIKKIAKQA-- 163 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEET-------------TSBGGGHHHHHHHHHHTT-EE--EEEEE-TTS-HHHHHHHHHH---
T ss_pred cchHHHHHHHHHcCCCEEEEc-------------CCChHHHHHHHHHHHHcCCeE--EEEEC-CCCCHHHHHHHHHhC--
Confidence 13567899999999988763 122333344456677888763 22332 335555444432221
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
. +|..++...|+.=.. . .-..++...+...|..... ++..| .++....+...+..||+.+++|..+
T Consensus 164 ---~---gFiY~vs~~GvTG~~-~-~~~~~l~~~i~~ik~~~~~---Pv~vG-FGI~~~e~~~~~~~~aDGvIVGSa~ 229 (259)
T PF00290_consen 164 ---S---GFIYLVSRMGVTGSR-T-ELPDELKEFIKRIKKHTDL---PVAVG-FGISTPEQAKKLAAGADGVIVGSAF 229 (259)
T ss_dssp ---S---SEEEEESSSSSSSTT-S-SCHHHHHHHHHHHHHTTSS----EEEE-SSS-SHHHHHHHHTTSSEEEESHHH
T ss_pred ---C---cEEEeeccCCCCCCc-c-cchHHHHHHHHHHHhhcCc---ceEEe-cCCCCHHHHHHHHccCCEEEECHHH
Confidence 1 233344444432111 1 2245666777777776622 22223 2333444556666999999999754
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=85.28 E-value=4.9 Score=35.00 Aligned_cols=65 Identities=15% Similarity=0.020 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
++.++...+.|++.++++.= |++ ..+-+.++++ ..++++....|..+ +.++.+.++|++++.++=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-----g~~-n~~~i~~i~~---~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-----GPN-NDDAAKEALH---AYPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-----CCC-cHHHHHHHHH---hCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 44566677799999999752 545 5544444443 45678888888876 999999999999999863
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=85.24 E-value=6 Score=36.24 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC------------CCC--CchhHHHHHHHHHHhh-hc--CceEEEeCCCCCH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------TIG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGMLEK 118 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~------------~~g--e~~~~~~l~~~i~~~k-~~--~~~i~~~~g~l~~ 118 (320)
.+.+++.+.++.+.+.|++.+.+.+.... .+| .+..++.-++.++.++ .. ++++..+.|..+.
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ 301 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSA 301 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 45668888888888899999988764211 001 0223344566777776 33 5778888899999
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++..+|.|.|.++
T Consensus 302 eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 302 EDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 99888888999988775
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=11 Score=35.94 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEe--CCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~--~g~l~~e~l~~L~~aGld 130 (320)
.+.+-+++.++.+.+.|++.|+|.. +.| -..-..+.++++.+|+ .+++ ++.+ .|.-....+. -.++|++
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkD----taG-~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~la-AieAGad 233 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKD----MAG-ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLA-AVEAGAD 233 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECC----CCC-CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHH-HHHcCCC
Confidence 4677788888888888999988842 222 1233556666666663 2344 3333 3433344444 4588999
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
.|..++... +. ...-+.+.++..+ +..|++++++
T Consensus 234 ~vD~ai~g~g~g-----agN~~tE~lv~~L---~~~g~~tgiD 268 (468)
T PRK12581 234 RIDTALSPFSEG-----TSQPATESMYLAL---KEAGYDITLD 268 (468)
T ss_pred EEEeeccccCCC-----cCChhHHHHHHHH---HhcCCCCCcC
Confidence 888877654 22 1122445555444 3446655444
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=85.16 E-value=14 Score=28.07 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc---eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~---~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++|++.+.+. +.+.+-+++.+.. +...+.+.++++.+++.+. .+. -.|...++..++|+++|+|.+
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~------~~~~~~~~~~~~~L~~~~~~~i~i~-~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS------GGHMTLFPEVIELLRELGAGDILVV-GGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc------hhhHHHHHHHHHHHHhcCCCCCEEE-EECCCCHHHHHHHHHCCCCEE
Confidence 67888777665 4677777776431 2355667777777776543 332 334556788999999999876
Q ss_pred cc
Q 020848 133 NH 134 (320)
Q Consensus 133 ~i 134 (320)
..
T Consensus 107 ~~ 108 (122)
T cd02071 107 FG 108 (122)
T ss_pred EC
Confidence 43
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=5.9 Score=35.00 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 68 AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 68 ~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+.|++.|.+- ....+.+.+.++.++. .++.+.++.|. +++.++++.+.|+|.|.++
T Consensus 198 A~~~GaDiI~LD---------n~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 198 AMNAGADIVMCD---------NMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHcCCCEEEEC---------CCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeC
Confidence 345777766542 1345677777776553 23446666665 9999999999999999987
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=85.14 E-value=11 Score=37.37 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEe--CCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~--~g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|-. +.| -..-..+.++++.+|+ .+++ ++++ .|.-....+ .-.++|++
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~D----t~G-~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~l-aAv~aGad 224 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKD----MAG-LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYL-KAVEAGVD 224 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----cCC-CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHH-HHHHhCCC
Confidence 5789999999999999999998842 222 1233556677777663 3433 4444 343334444 44588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.++
T Consensus 225 ~vD~ai~g~ 233 (592)
T PRK09282 225 IIDTAISPL 233 (592)
T ss_pred EEEeecccc
Confidence 988887664
|
|
| >PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification | Back alignment and domain information |
|---|
Probab=85.12 E-value=6.6 Score=33.56 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEE--eCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~--~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+++.+.++.+.+.|++.|.+.. ..++.+++... .++++.. .....+...++.|.+.|++++.++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~------------~g~~~~~k~~~-~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN------------PGLLELLKELG-PDLKIIADYSLNVFNSESARFLKELGASRITLSP 68 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhC-CCCcEEEecCccCCCHHHHHHHHHcCCCEEEECc
Confidence 5778888888899999987742 12344444331 1445444 3455889999999999999999987
Q ss_pred ccc
Q 020848 137 DTS 139 (320)
Q Consensus 137 et~ 139 (320)
|-.
T Consensus 69 EL~ 71 (233)
T PF01136_consen 69 ELS 71 (233)
T ss_pred cCC
Confidence 654
|
; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=85.07 E-value=11 Score=34.14 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhcCceEEEeCC-CCCHHHHHHHHHhccCeeccCc
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g-~l~~e~l~~L~~aGld~v~i~l 136 (320)
-+..++.++.+|+......+-.| ..+.+..+.|.++|+|.+.+++
T Consensus 134 s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 134 SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGI 179 (343)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 36677778888854222222335 6899999999999999998774
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >COG1751 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.07 E-value=17 Score=28.81 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceE-EEeC-----C--CCCHHHHHHHHHhcc
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTL-----G--MLEKHQAIELKKAGL 129 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i-~~~~-----g--~l~~e~l~~L~~aGl 129 (320)
.+.+.-.++.+.+.|++++++.+.. |. ....++++++. ++.+-+ .-+. | .+++|.-+.|++.|.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~t----G~--tA~k~lemveg--~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASST----GY--TALKALEMVEG--DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecc----cH--HHHHHHHhccc--CceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 3444444577888999999886532 31 22234443332 122221 1112 2 268899999999998
Q ss_pred CeeccC--cccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 130 TAYNHN--LDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 130 d~v~i~--let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
+.+.-+ +.+. +.+-++...-...+-.-++++ +-..|+++++.+.+
T Consensus 85 ~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcvEIti 132 (186)
T COG1751 85 KVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCVEITI 132 (186)
T ss_pred eeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEEEEEE
Confidence 877654 6666 556666654445666667776 56678887766544
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=85.01 E-value=6.2 Score=36.28 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++.+|.++.++.+.+.|+..+.++++...... .+.......+.++.....++++..+.+..+.+.++++.+.|+|.|.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~ 311 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVA 311 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHH
Confidence 56788888888888889988888765322110 0111122333333322225677777777788888888777888888
Q ss_pred cCcccc--HHHHhhhCC
Q 020848 134 HNLDTS--REFYSKIIT 148 (320)
Q Consensus 134 i~let~--~~~~~~i~~ 148 (320)
++=-.. |++..++..
T Consensus 312 ~gR~liadPdl~~k~~~ 328 (353)
T cd04735 312 IGRGLLVDPDWVEKIKE 328 (353)
T ss_pred HhHHHHhCccHHHHHHc
Confidence 763332 455454443
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.89 E-value=8.2 Score=35.76 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=51.7
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce----EEEeCCC-----CCHHHHH
Q 020848 52 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME----VCCTLGM-----LEKHQAI 122 (320)
Q Consensus 52 ~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~----i~~~~g~-----l~~e~l~ 122 (320)
.|+..+-|-+.+-++.+.+.|++-|-+... .+ ...++-..++.+|+.|.+ ++-+... ...+.++
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDA----lN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ak 163 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDA----LN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAK 163 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechh----cc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHH
Confidence 456566666777778888899988876543 22 235666777778777654 2323222 2467788
Q ss_pred HHHHhccCeeccC
Q 020848 123 ELKKAGLTAYNHN 135 (320)
Q Consensus 123 ~L~~aGld~v~i~ 135 (320)
+|.+.|+|+|.|.
T Consensus 164 el~~~g~DSIciK 176 (472)
T COG5016 164 ELLEMGVDSICIK 176 (472)
T ss_pred HHHHcCCCEEEee
Confidence 8899999999873
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=23 Score=29.79 Aligned_cols=160 Identities=10% Similarity=0.056 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+.|+.++.++.+.+.|++.+-++-. .| .-.+.|+.+++..-++.+-.|. ++.++++...++|.+.+.-
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~------tp----~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR------TP----AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------Cc----cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 58899999999999999998877531 12 3344555555322234455555 8999999999999976543
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
. .-+ -+.++.+++.|+.+-.+++ |+.|+.... ++| .+.+.+++ ...+
T Consensus 83 P-------------~~~----~~vi~~a~~~~i~~iPG~~-----TptEi~~A~----~~G--a~~vK~FP-----a~~~ 129 (201)
T PRK06015 83 P-------------GTT----QELLAAANDSDVPLLPGAA-----TPSEVMALR----EEG--YTVLKFFP-----AEQA 129 (201)
T ss_pred C-------------CCC----HHHHHHHHHcCCCEeCCCC-----CHHHHHHHH----HCC--CCEEEECC-----chhh
Confidence 1 112 2556788888887644433 566665544 455 55566543 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
. . ...+...+..+|+..+-.++ ++..+.-..-+.+|+.....|.
T Consensus 130 G---G------~~yikal~~plp~~~l~ptG---GV~~~n~~~~l~ag~~~~~ggs 173 (201)
T PRK06015 130 G---G------AAFLKALSSPLAGTFFCPTG---GISLKNARDYLSLPNVVCVGGS 173 (201)
T ss_pred C---C------HHHHHHHHhhCCCCcEEecC---CCCHHHHHHHHhCCCeEEEEch
Confidence 1 0 13344556677764333232 2333333556777766555565
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=48 Score=33.49 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
..+.++.+.+.|+..+.+.+-..-..| .+++ ++.++ ..++++....-.+++-++.+-+.+|.|.|.+-...+
T Consensus 72 ~~~~a~~y~~~GA~aiSVlTe~~~F~G---s~~~----l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L 144 (695)
T PRK13802 72 PAALAREYEQGGASAISVLTEGRRFLG---SLDD----FDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAAL 144 (695)
T ss_pred HHHHHHHHHHcCCcEEEEecCcCcCCC---CHHH----HHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhc
Confidence 344455567788988877653232333 2333 33334 346777776667999999999999999998865443
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCC
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP 219 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~ 219 (320)
+-++..+.++.+++.|+.+ ++- -.+.+|+...+ +.+ ...|+++.-. +... .
T Consensus 145 -----------~~~~l~~l~~~a~~lGme~----LvE-vh~~~el~~a~----~~g--a~iiGINnRd------L~tf-~ 195 (695)
T PRK13802 145 -----------DDAQLKHLLDLAHELGMTV----LVE-THTREEIERAI----AAG--AKVIGINARN------LKDL-K 195 (695)
T ss_pred -----------CHHHHHHHHHHHHHcCCeE----EEE-eCCHHHHHHHH----hCC--CCEEEEeCCC------Cccc-e
Confidence 1224455677888889875 331 24667765544 345 5667776532 2211 1
Q ss_pred CCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcC
Q 020848 220 VEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 220 ~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~ 295 (320)
.+.+. ....+.++|...+.++.+ ++. +..-.....+|++.+++|+.++++. ++.+.++-+..+|-...
T Consensus 196 vd~~~----t~~L~~~ip~~~~~VsES--GI~~~~d~~~l~~~G~davLIGeslm~~~--dp~~~~~~l~~~~~~~~ 264 (695)
T PRK13802 196 VDVNK----YNELAADLPDDVIKVAES--GVFGAVEVEDYARAGADAVLVGEGVATAD--DHELAVERLVKAGARVK 264 (695)
T ss_pred eCHHH----HHHHHhhCCCCcEEEEcC--CCCCHHHHHHHHHCCCCEEEECHHhhCCC--CHHHHHHHHHhcccccc
Confidence 23332 222334567655555421 222 2222445578999999998777654 46666666776774443
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.5 Score=33.61 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeecc--CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH--NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i--~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
++.=+++|+.+++.++- +..-..++++.+.+.++|+|.+-. ++-+.-.+ ...+..+.++..+.++.+.++-..+
T Consensus 136 y~~EVemi~~A~~~gl~--T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~--Ga~~~~sl~~a~~~~~~i~~aa~~v 211 (268)
T PF09370_consen 136 YDREVEMIRKAHEKGLF--TTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSI--GAKTALSLEEAAERIQEIFDAARAV 211 (268)
T ss_dssp HHHHHHHHHHHHHTT-E--E--EE-SHHHHHHHHHHT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCe--eeeeecCHHHHHHHHHcCCCEEEecCCccCCCCc--CccccCCHHHHHHHHHHHHHHHHHh
Confidence 34445677777776652 333347999999999999998754 44332111 1112457777777777766654445
Q ss_pred eeeEEE-EeC---CCHHHHHHHHHHHh
Q 020848 170 CSGGII-GLG---EAEEDRVGLLHTLA 192 (320)
Q Consensus 170 ~~~~i~-Glg---et~ed~~~~l~~l~ 192 (320)
+.++++ .+| .+++|....++.-.
T Consensus 212 ~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 212 NPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp -TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 555444 233 57788777775543
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=27 Score=30.41 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
|.|.+++.++...+.|+ .++..|.+.+-. .| ...+.+..+.+..++.|+.+.++ ..+.+.++.+.+ .+|.
T Consensus 27 s~e~~~~~a~~~~~~g~-~~~r~g~~kpRt-s~~sf~G~G~~gl~~L~~~~~~~Gl~~~Te--v~d~~~v~~~~e-~vdi 101 (250)
T PRK13397 27 SYDHIRLAASSAKKLGY-NYFRGGAYKPRT-SAASFQGLGLQGIRYLHEVCQEFGLLSVSE--IMSERQLEEAYD-YLDV 101 (250)
T ss_pred CHHHHHHHHHHHHHcCC-CEEEecccCCCC-CCcccCCCCHHHHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHh-cCCE
Confidence 67899999999888998 455555443211 11 22344444444444779987664 477889999988 5998
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.|+--.. .+ ...++.+.+.|..|.+ =-|..-+.+|+...++++.+-| ...+.+.. .|
T Consensus 102 lqIgs~~~----------~n----~~LL~~va~tgkPVil--k~G~~~t~~e~~~A~e~i~~~G--n~~i~L~e----Rg 159 (250)
T PRK13397 102 IQVGARNM----------QN----FEFLKTLSHIDKPILF--KRGLMATIEEYLGALSYLQDTG--KSNIILCE----RG 159 (250)
T ss_pred EEECcccc----------cC----HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC--CCeEEEEc----cc
Confidence 88863111 11 3445555555655311 1232358999999999999887 33343321 13
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCce-e--ecCCcccccChhHHHHHHHcCCceEeeCCcccc----CCC---CChh
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAM-V--RLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT----TPN---NDFD 281 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~-i--~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~----~~~---~~~~ 281 (320)
+.-++.+ ....-.++.+...+..+.-.. + ..+.|...+.+.....++..||+.++....+-. +++ .+++
T Consensus 160 ~~~Y~~~-~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~ 238 (250)
T PRK13397 160 VRGYDVE-TRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYK 238 (250)
T ss_pred cCCCCCc-cccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHH
Confidence 3111111 000111233344443222111 1 122343333345567788899998877532211 222 3577
Q ss_pred HHHHHHHHc
Q 020848 282 ADQLMFKVL 290 (320)
Q Consensus 282 ~~~~~i~~~ 290 (320)
+..++++++
T Consensus 239 ~l~~l~~~~ 247 (250)
T PRK13397 239 QLEQLGQEL 247 (250)
T ss_pred HHHHHHHHh
Confidence 777777664
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=84.18 E-value=11 Score=37.12 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+.+.++.+.+.|++.|+|-. +.| -..-..+.++++.+|+ .+++ +++++ |.-....+. -.++|++
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~D----t~G-~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~la-AieAGa~ 225 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKD----MAG-LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLK-AIEAGID 225 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----CCC-CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHH-HHHcCCC
Confidence 3567778888888888888888742 222 1233556666666662 3333 34433 333333333 3477888
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.+.
T Consensus 226 ~vD~ai~gl 234 (593)
T PRK14040 226 GVDTAISSM 234 (593)
T ss_pred EEEeccccc
Confidence 888777665
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=13 Score=33.68 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccccH-HHHhhhCC-C-CCHHHHHHHHHHHHHc
Q 020848 91 NFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR-EFYSKIIT-T-RSYDERLETLKHVREA 165 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~-~~~~~i~~-~-~~~~~~l~~i~~a~~~ 165 (320)
.-+..+++++.+|+. +..+.. ....+.+..+.|.++|.|.+-+++=... =+-+.... + ..+..+.+.-+.+++.
T Consensus 134 hs~~~i~~ik~ik~~~P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~ 212 (346)
T PRK05096 134 YSEHFVQFVAKAREAWPDKTICA-GNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL 212 (346)
T ss_pred cHHHHHHHHHHHHHhCCCCcEEE-ecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc
Confidence 346677788888853 333322 2347999999999999999877653220 00011111 1 1345566777777777
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHH
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l 188 (320)
|.++-.+-=+ .+.-|+...+
T Consensus 213 gvpiIADGGi---~~sGDI~KAl 232 (346)
T PRK05096 213 GGQIVSDGGC---TVPGDVAKAF 232 (346)
T ss_pred CCCEEecCCc---ccccHHHHHH
Confidence 7764333211 2334555544
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=84.10 E-value=5.6 Score=34.09 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHH-HHHhccCeeccC
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIE-LKKAGLTAYNHN 135 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~-L~~aGld~v~i~ 135 (320)
..+.++.+.+.|+..+.+.+-...-..+.. -++++++++ ..++++..+.|..+.+.++. +++.|++.+.++
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~----~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGY----DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCC----CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 455666777889999988762211001111 255566665 34788889989999999988 999999998775
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=84.06 E-value=9 Score=34.10 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe
Q 020848 34 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT 112 (320)
Q Consensus 34 ~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~ 112 (320)
+.+|.|+.... ....++.||..+.++.+++. .-..+.|...+..... ...+++.++-.+..++.|..+..-
T Consensus 117 pk~cg~~~~~~-------~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 117 LKKNSLFGNDV-------AQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred CccccccCCCC-------cccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 56777765321 12236778888888777654 1223444332111111 112344444444444556663332
Q ss_pred C-CCCCHHHHHHHHHh
Q 020848 113 L-GMLEKHQAIELKKA 127 (320)
Q Consensus 113 ~-g~l~~e~l~~L~~a 127 (320)
. +..+.+.++++.+.
T Consensus 189 ~~~~~~~~ei~~~~~~ 204 (285)
T TIGR02320 189 HSRKKDPDEILEFARR 204 (285)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3 34666776666554
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=84.01 E-value=9.7 Score=34.51 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCC--CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHH-hccCeecc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKK-AGLTAYNH 134 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~--~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~-aGld~v~i 134 (320)
++..+.++.+.+.|+..+.+.+..... .| +.. ++.+++++ ..++++..+.|..+.+.++++.+ .|+|.|.+
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G-~a~----~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNG-EAE----YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCC-CcC----hHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 356667777777898888886543211 12 122 35666666 35788888888889888888876 68999988
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 7
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=10 Score=32.43 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
|+.+++.+..+.+.+.|++-|.-.+|. .+.| ...+.+.-+.+.+. ..+.+-...|..+.+.+..+.++|.+++..|
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~-~~~g--at~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF-STGG--ATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCC--CCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 777888777777777888744443332 2223 23333333222222 2355666777888888888888888887764
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.76 E-value=31 Score=30.64 Aligned_cols=192 Identities=12% Similarity=0.052 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+..-|.-.+.+...+ ...+.+..++..+. +..+++.++..- .+.+.+++..++|++.|.
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~---~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH---SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc---CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 5678888888888888765554333222211 23445555555443 556676555332 578899999999999998
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-EEEe--------CCCHHHHHHHHHHHhcCCCCCCeeee-
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG-IIGL--------GEAEEDRVGLLHTLATLPTHPESVPI- 203 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-i~Gl--------get~ed~~~~l~~l~~l~~~~~~v~~- 203 (320)
+.-...+. ...++...+..+.+++.|+.+...+ -+|- |.+.-+..+..++.++.| ++.+.+
T Consensus 103 ~d~s~~~~-------~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg--~DyLAva 173 (281)
T PRK06806 103 FDGSHLPL-------EENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD--VDALAVA 173 (281)
T ss_pred EcCCCCCH-------HHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC--CCEEEEc
Confidence 86443310 1123334566677788888765443 2220 111123445555666666 677766
Q ss_pred -eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC
Q 020848 204 -NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 204 -~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
.+..+ |. ...+....+.+.++.+ ..+-+.+-+.+ .++..+.-...+.+|++.+-..
T Consensus 174 iG~~hg---~~-~~~~~l~~~~L~~i~~----~~~iPlV~hG~--SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 174 IGNAHG---MY-NGDPNLRFDRLQEIND----VVHIPLVLHGG--SGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred cCCCCC---CC-CCCCccCHHHHHHHHH----hcCCCEEEECC--CCCCHHHHHHHHHcCCcEEEEh
Confidence 44433 32 1224455554333322 22222222221 2444454466788999988544
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=83.71 E-value=5.2 Score=32.62 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
+.||+.+ +.+.|++.|.|-. ...+++.++++.++.. .+.+.++.| ++.+.+.++.+.|+|.+.+
T Consensus 89 ~~ee~~e----a~~~g~d~I~lD~---------~~~~~~~~~v~~l~~~~~~v~ie~SGG-I~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 89 NLEEAEE----ALEAGADIIMLDN---------MSPEDLKEAVEELRELNPRVKIEASGG-ITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp SHHHHHH----HHHTT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEESS-SSTTTHHHHHHTT-SEEEE
T ss_pred CHHHHHH----HHHhCCCEEEecC---------cCHHHHHHHHHHHhhcCCcEEEEEECC-CCHHHHHHHHhcCCCEEEc
Confidence 4555544 4447888876632 1235666666666533 355556544 8899999999999999988
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 155 g 155 (169)
T PF01729_consen 155 G 155 (169)
T ss_dssp C
T ss_pred C
Confidence 6
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) | Back alignment and domain information |
|---|
Probab=83.66 E-value=19 Score=31.69 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-----chhHHHHHHHHHHhhh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 104 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-----~~~~~~l~~~i~~~k~ 104 (320)
.+..++...+..+.+.|++.+++.+|+.+..++ +..+.+-.++++.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 567899999999999999999998887665542 2344455566665553
|
5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=83.63 E-value=35 Score=31.09 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-----------------CCc---------hhHHHHHHHHHHhhhcCceEE
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----------------GRK---------TNFNQILEYVKDIRDMGMEVC 110 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----------------ge~---------~~~~~l~~~i~~~k~~~~~i~ 110 (320)
+.+...+.++.+++.|++.|.||.-..... +++ +..+.+.++.+..++.|+.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 678888889999999999998885210000 100 011334444444455677765
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCc-cccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNL-DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLL 188 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~l-et~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l 188 (320)
+++ ++.+.++.|.+.|++.+-|+= +. .+ +.-++.+.+.|.++ ++.. .-+.+|+...+
T Consensus 94 stp--fd~~svd~l~~~~v~~~KIaS~~~-----------~n----~pLL~~~A~~gkPv----ilStGmatl~Ei~~Av 152 (329)
T TIGR03569 94 STP--FDLESADFLEDLGVPRFKIPSGEI-----------TN----APLLKKIARFGKPV----ILSTGMATLEEIEAAV 152 (329)
T ss_pred EEe--CCHHHHHHHHhcCCCEEEECcccc-----------cC----HHHHHHHHhcCCcE----EEECCCCCHHHHHHHH
Confidence 553 778888888888888777641 11 11 34566666777664 3333 24899999999
Q ss_pred HHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 189 HTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 189 ~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
+++++-|.....+.+..-. .+ .|.+..+--++.+..++..++- .+-++. . ..+......++..||+.+
T Consensus 153 ~~i~~~G~~~~~i~llhC~--s~-----YP~~~~~~nL~~I~~Lk~~f~~-pVG~Sd-H-t~G~~~~~aAvalGA~iI 220 (329)
T TIGR03569 153 GVLRDAGTPDSNITLLHCT--TE-----YPAPFEDVNLNAMDTLKEAFDL-PVGYSD-H-TLGIEAPIAAVALGATVI 220 (329)
T ss_pred HHHHHcCCCcCcEEEEEEC--CC-----CCCCcccCCHHHHHHHHHHhCC-CEEECC-C-CccHHHHHHHHHcCCCEE
Confidence 9999877211023332211 11 1112222235556666655542 222221 1 111233456777899955
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.51 E-value=11 Score=33.45 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEE-ecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCC----------CCHH--
Q 020848 56 MTKDAVMQAAQKAKEA--GSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGM----------LEKH-- 119 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~--g~~~i~l-~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~----------l~~e-- 119 (320)
...+++++.+...... +. .+.+ .++ ...+++.+.++.+.+.|.. +.+|.+. .+.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~-pvi~si~g--------~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~ 150 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQ-PLIASVGG--------SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAV 150 (289)
T ss_pred cCHHHHHHHHHHHHhccCCC-eEEEEecc--------CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHH
Confidence 5788888888766553 22 2322 221 1235666777776655543 3333221 1233
Q ss_pred --HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 120 --QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 120 --~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
.++.++++ + .+.+.+ ++....+.++..+.++.+.+.|.+
T Consensus 151 ~eiv~~vr~~-~-~~pv~v--------Kl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 151 ANLLKAVKAA-V-DIPLLV--------KLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHHHHc-c-CCCEEE--------EeCCCCCHHHHHHHHHHHHHcCCC
Confidence 34444443 2 122332 233345677888999999999987
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.38 E-value=30 Score=30.26 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhccCeecc-Cccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNH-NLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i-~let 138 (320)
+.+-++.+.+.|++.+.+- ++.+++..++++.+++.|+. +..-.-..+++.++.+.+..-+.|.+ +.-+
T Consensus 106 ~e~f~~~~~~aGvdGviip---------DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIP---------DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred HHHHHHHHHHcCCcEEEEC---------CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCC
Q ss_pred c-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC-CHHHHHHHHHH
Q 020848 139 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE-AEEDRVGLLHT 190 (320)
Q Consensus 139 ~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge-t~ed~~~~l~~ 190 (320)
. .. +........+.++.+++ ....-+++|.|- +.+++.+.+..
T Consensus 177 vTG~------~~~~~~~~~~~i~~vk~---~~~~pv~vGfGI~~~e~v~~~~~~ 221 (258)
T PRK13111 177 VTGA------RSADAADLAELVARLKA---HTDLPVAVGFGISTPEQAAAIAAV 221 (258)
T ss_pred CCCc------ccCCCccHHHHHHHHHh---cCCCcEEEEcccCCHHHHHHHHHh
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.29 E-value=7.1 Score=33.34 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+.++..+.++.+.+.|++.+-++- .-|...+.|.++.+..++..-.+.+-.|. ++.++++...++|.+.+--
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5889999999999999999887653 11334555555555554322235555565 8999999999999976543
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
. .-+ -+.++.+++.|+.+-.+++ |+.|+...+ ++| .+.+.+++ ...+
T Consensus 98 P-------------~~~----~~v~~~~~~~~i~~iPG~~-----TpsEi~~A~----~~G--a~~vKlFP-----A~~~ 144 (222)
T PRK07114 98 P-------------LFN----PDIAKVCNRRKVPYSPGCG-----SLSEIGYAE----ELG--CEIVKLFP-----GSVY 144 (222)
T ss_pred C-------------CCC----HHHHHHHHHcCCCEeCCCC-----CHHHHHHHH----HCC--CCEEEECc-----cccc
Confidence 1 112 2556778888877644433 566665544 455 55555543 1111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
. ...+...+..+|+..+-.++| ++...+.-..-+.+|+..+-.|.
T Consensus 145 G----------~~~ikal~~p~p~i~~~ptGG-V~~~~~n~~~yl~aGa~avg~Gs 189 (222)
T PRK07114 145 G----------PGFVKAIKGPMPWTKIMPTGG-VEPTEENLKKWFGAGVTCVGMGS 189 (222)
T ss_pred C----------HHHHHHHhccCCCCeEEeCCC-CCcchhcHHHHHhCCCEEEEECh
Confidence 1 133444455566643332332 22210222455678877775565
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.25 E-value=13 Score=32.64 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc---cCe-
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG---LTA- 131 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG---ld~- 131 (320)
+.+.+.++.+++.|. .+.++. +..+ ....+++.++++.+.+.|.. +.-|.|.++++.+..|.+.= ++.
T Consensus 114 ~~~~~~i~~a~~~G~-~v~~~~---~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 188 (268)
T cd07940 114 ERAVEAVEYAKSHGL-DVEFSA---EDAT-RTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNI 188 (268)
T ss_pred HHHHHHHHHHHHcCC-eEEEee---ecCC-CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 444555566677775 455542 1111 23567788888888877654 44578888888776664441 111
Q ss_pred -eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 132 -YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 132 -v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.+++ +...++..-+.+.-.+.++|...-=..+.|+|+
T Consensus 189 ~i~l~~----------H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~ 227 (268)
T cd07940 189 KVPISV----------HCHNDLGLAVANSLAAVEAGARQVECTINGIGE 227 (268)
T ss_pred ceeEEE----------EecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence 23322 333455555566666667898854555777754
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.23 E-value=17 Score=30.67 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=67.4
Q ss_pred HHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe-CCC-CCHHHHHHHHHhccCeeccC--ccccH
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGM-LEKHQAIELKKAGLTAYNHN--LDTSR 140 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~-~g~-l~~e~l~~L~~aGld~v~i~--let~~ 140 (320)
++.+.+.|.+-+.+.+. ...+.+...++..++.|.++.+. .+. -.++..+.|+++|+|.+.+. .|.
T Consensus 73 ~~ma~~aGAd~~tV~g~--------A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~-- 142 (217)
T COG0269 73 ARMAFEAGADWVTVLGA--------ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDA-- 142 (217)
T ss_pred HHHHHHcCCCEEEEEec--------CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccH--
Confidence 55667789888877652 24577889999999888775433 233 34666778888999987653 322
Q ss_pred HHHhhhCCCCCH-HHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHH
Q 020848 141 EFYSKIITTRSY-DERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 186 (320)
Q Consensus 141 ~~~~~i~~~~~~-~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 186 (320)
+ ..+.+| .+.++.++.+.+.|+.+.+. =|-+++++..
T Consensus 143 q-----~~G~~~~~~~l~~ik~~~~~g~~vAVa----GGI~~~~i~~ 180 (217)
T COG0269 143 Q-----AAGKSWGEDDLEKIKKLSDLGAKVAVA----GGITPEDIPL 180 (217)
T ss_pred h-----hcCCCccHHHHHHHHHhhccCceEEEe----cCCCHHHHHH
Confidence 1 125566 67788899988888665322 2446555443
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=83.13 E-value=16 Score=31.86 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCeeccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYNHN 135 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~i~ 135 (320)
.++..+.++.+.+.|+..+.+.+-...-...... +++++.++ ..++++..+.|..+.+.+.++.+.| ++.+.++
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~----~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD----LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEh
Confidence 3445566667778999998885432211111122 23444544 3478888999999999999999988 8887664
Q ss_pred ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 136 let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
- .+|.. ..+++ +..+.+++.|+.+
T Consensus 230 ~----a~~~~---~~~~~---~~~~~~~~~gi~~ 253 (254)
T TIGR00735 230 S----VFHYR---EITIG---EVKEYLAERGIPV 253 (254)
T ss_pred H----HHhCC---CCCHH---HHHHHHHHCCCcc
Confidence 2 12211 23453 4445566677754
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=83.11 E-value=10 Score=32.31 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.++.+.+.|++.+.+..-...-...... +++++.++ ..++++..+.|..+.+.++.+++.|++.+.++
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~----~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPN----FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 34445567899988875321110011112 34444444 34678888999999999999999999998875
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=83.03 E-value=16 Score=33.67 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhcCceEEEeCCCC----C-HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 020848 93 NQILEYVKDIRDMGMEVCCTLGML----E-KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGI 167 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~~i~~~~g~l----~-~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 167 (320)
..+.+.++.+++.|+.+.++.|.. + .+..+.+...|.++|.+++... .+ -+.++.+++.++
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~----------~d----~~l~~~l~~~~I 271 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA----------ES----QELIDMVKEKDI 271 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC----------CC----HHHHHHHHHcCC
Confidence 446666667776677766666642 1 2345566666777777776443 11 244667777777
Q ss_pred eee----eeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 168 NVC----SGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 168 ~v~----~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.+. +++..|.-.+.++ .-+..+.+.|
T Consensus 272 ~lEvCPtSN~~~~~v~~~~~--HPi~~l~~~G 301 (362)
T PTZ00124 272 LLEVCPISNVLLNNAKSMDT--HPIRKLYDAG 301 (362)
T ss_pred eEEECCcchhhhhcCCchhh--HHHHHHHHCC
Confidence 632 4445444333221 2255555666
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=82.84 E-value=25 Score=35.02 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHH----HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~----~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.||+++.+.. +++.|...+.++. ...+ ....+++.++++.+.+.|.. +.-|.|..+++.+.++.+.=
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~---EDa~-rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l 278 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSP---EDAG-RSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADI 278 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEec---ccCC-CCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHH
Confidence 577777766543 3445655555532 1122 24567788888887766644 45567877776665554431
Q ss_pred ---cC---eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 ---LT---AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ---ld---~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
++ .+.+++ +...++..-+.+.-.+.++|...-=..+.|+||
T Consensus 279 ~~~~~~~~~v~i~v----------H~HND~GlAvANslaAv~AGA~~Vd~TinGlGE 325 (632)
T PLN02321 279 KANTPGIENVIIST----------HCQNDLGLSTANTLAGAHAGARQVEVTINGIGE 325 (632)
T ss_pred HHhcCCCCCceEEE----------EeCCCCCHHHHHHHHHHHhCCCEEEEecccccc
Confidence 11 122222 223455555555556677777644444667765
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.83 E-value=32 Score=30.18 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCch-------------hHHHHHHHHHHhhh-cCce-EEEe--CCCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRD-MGME-VCCT--LGML-- 116 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~-------------~~~~l~~~i~~~k~-~~~~-i~~~--~g~l-- 116 (320)
+.|.-++.++.+.+.|++-+-|+-...++. ..|. ..+.++++++++++ ..++ +..+ |-.+
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 568888888888889999888863211111 1121 23467888888873 3444 3222 1111
Q ss_pred -CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 117 -EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 117 -~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.++.++.++++|+|.+.+.- -.+++.-+.++.+++.|+.. .+++...-+.+.+..+.+....
T Consensus 107 G~e~F~~~~~~aGvdgviipD-------------LP~ee~~~~~~~~~~~gi~~--I~lv~PtT~~eri~~i~~~a~g-- 169 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPD-------------LPYEESDYLISVCNLYNIEL--ILLIAPTSSKSRIQKIARAAPG-- 169 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecC-------------CCHHHHHHHHHHHHHcCCCE--EEEECCCCCHHHHHHHHHhCCC--
Confidence 36779999999999988742 23455667778888989764 2344233233444444433221
Q ss_pred CCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 196 ~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.|. ++..+|+.=.. ... ..++...++..|..... ++.-| .++. ++........||+.++.|..+
T Consensus 170 ----FIY---~vS~~GvTG~~-~~~-~~~~~~~i~~ir~~t~~---Pi~vG-FGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 170 ----CIY---LVSTTGVTGLK-TEL-DKKLKKLIETIKKMTNK---PIILG-FGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred ----cEE---EEcCCCCCCCC-ccc-cHHHHHHHHHHHHhcCC---CEEEE-CCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 223 33344443222 111 34455666666654322 22222 2233 333344556789999999755
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=82.70 E-value=8.2 Score=35.36 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-C-ceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G-MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~-~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
-.+.++.+.+.|++-++|-+. .| .-+.+.+.++.+|+. + +.+..-| ..+.+..+.|.++|+|.|.+++=.
T Consensus 109 ~~er~~~L~~agvD~ivID~a----~g---~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a~~L~~aGad~vkVGiGp 180 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSA----HG---HSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGAKDLIDAGADAVKVGIGP 180 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-S----ST---TSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHHHHHHHTT-SEEEESSSS
T ss_pred HHHHHHHHHHcCCCEEEcccc----Cc---cHHHHHHHHHHHHHhCCCceEEecc-cCCHHHHHHHHHcCCCEEEEeccC
Confidence 355566677789988888532 12 336777888888843 3 5554433 589999999999999999888643
Q ss_pred c-H-HHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHH
Q 020848 139 S-R-EFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 139 ~-~-~~~~~i~~~~-~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 189 (320)
. - -+.....-+. .+.-+.+.-+.+++.++++..+-= -.+..|+...+.
T Consensus 181 GsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG---i~~sGDi~KAla 231 (352)
T PF00478_consen 181 GSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG---IRTSGDIVKALA 231 (352)
T ss_dssp STTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS----SSHHHHHHHHH
T ss_pred CcccccccccccCCcHHHHHHHHHHHhhhccCceeecCC---cCcccceeeeee
Confidence 2 1 1222211122 455667777777778766533321 135567666553
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=82.53 E-value=29 Score=29.64 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----C--ceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G--MEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~--~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.|.+-+..++.+|.+ ..+..++-++.+++. + +.+.+. |-++.+.+..++++|+|.+-.+
T Consensus 133 vD~VlvMtV~PGf~GQ~-fi~~~l~KI~~l~~~~~~~~~~~~IeVD-GGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 133 LDLVLVMSVNPGFGGQA-FIPSALDKLRAIRKKIDALGKPIRLEID-GGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred cCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCCCEEEEC
Confidence 44555555445555543 445555555555432 3 334444 4477888888888888877665
|
|
| >PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT) | Back alignment and domain information |
|---|
Probab=82.44 E-value=2.2 Score=33.06 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=35.4
Q ss_pred eeeeeeeeecC-CCCCCCCCCCCHHHHHHHHHHH--------HHhCCCceeecCCcc--cccChhHHHHHHHcCCceE-e
Q 020848 200 SVPINALLAVK-GTPLQDQKPVEIWEMIRMIATA--------RIVMPKAMVRLSAGR--VRFSMPEQALCFLAGANSI-F 267 (320)
Q Consensus 200 ~v~~~~~~p~~-gt~~~~~~~~~~~e~~~~~a~~--------R~~~p~~~i~~~~g~--~~~~~~~~~~~~~~Gan~~-~ 267 (320)
.|.|..|+|+. +..+......+.++++..+... +...|..++++.++. +++.... +..||.+||++ +
T Consensus 2 ~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~-s~~FC~~CNRiRl 80 (128)
T PF06463_consen 2 DVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYELLPSEKRPNGPARYYRIPGGKGRVGFISPV-SNPFCSSCNRIRL 80 (128)
T ss_dssp EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TT-TS--GGG--EEEE
T ss_pred eEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCCccccccccCCcceEEEECCCCcEEEEEeCC-CCCCCCcCCEEEE
Confidence 47899999988 5556555667788877776543 112344566665433 5666665 45599999998 5
Q ss_pred eCCc
Q 020848 268 TGEK 271 (320)
Q Consensus 268 ~~~~ 271 (320)
+.++
T Consensus 81 TsdG 84 (128)
T PF06463_consen 81 TSDG 84 (128)
T ss_dssp -TTS
T ss_pred ccCc
Confidence 5444
|
MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A. |
| >PLN02540 methylenetetrahydrofolate reductase | Back alignment and domain information |
|---|
Probab=82.42 E-value=44 Score=32.78 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-----hhHHHHHHHHHHhhh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIRD 104 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-----~~~~~l~~~i~~~k~ 104 (320)
++.++|...+..+.+.|++.|+...|+.+..++. ..+.+-.++|+.+++
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~ 123 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRS 123 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHH
Confidence 6788999999999999999998887776654431 234567777777774
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=8.5 Score=33.10 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.++.+...|+..+++.+-...-...+..++ .++.+. ..++++....|..+.+.+..++++|++.+.++
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~----~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTE----PVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHH----HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 33444456689999988653211011122333 334444 34688888888898999999999999998875
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=82.10 E-value=19 Score=31.53 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccC----ccccHHHHhhhC------------CCCCHH
Q 020848 91 NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHN----LDTSREFYSKII------------TTRSYD 153 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~----let~~~~~~~i~------------~~~~~~ 153 (320)
..++..++++.+.+.++.. ......-+.+.+++|++.- .+.+. +.+..+..+.+. +-....
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARAT--DTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 4567777777777666542 2211123456677776652 12221 222212211111 113567
Q ss_pred HHHHHHHHHHHcCCeeeeeEEE
Q 020848 154 ERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 154 ~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
..++....+.+.|+++.++.++
T Consensus 219 ~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 219 KAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred HHHHHHHHHHHcCCcEEecCcc
Confidence 7778888888888887666444
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=81.89 E-value=8.6 Score=35.06 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v 132 (320)
.++++.++.++.+.+.|+.-+.+.+|..... ..+....+..+.++.++ ..++++..+.+..+.+.++++.+.| +|.|
T Consensus 238 ~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V 317 (336)
T cd02932 238 WDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 3567777777777777777776654422110 00111122334555555 3466776666667777777777776 6777
Q ss_pred ccC
Q 020848 133 NHN 135 (320)
Q Consensus 133 ~i~ 135 (320)
.++
T Consensus 318 ~~g 320 (336)
T cd02932 318 ALG 320 (336)
T ss_pred hhh
Confidence 665
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=81.86 E-value=8.7 Score=33.26 Aligned_cols=123 Identities=16% Similarity=0.085 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe---------CCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~---------~g~l~~e~l~~L~~ 126 (320)
+++..+...+..+- .-++-+.|++|+..... .+.+.+.++.+++.|+.++.- .+ .-++.++..++
T Consensus 22 lg~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~----~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~-~~~~yl~~~k~ 95 (244)
T PF02679_consen 22 LGLRYLEDLLESAG-DYIDFLKFGWGTSALYP----EEILKEKIDLAHSHGVYVYPGGTLFEVAYQQG-KFDEYLEECKE 95 (244)
T ss_dssp --HHHHHHHHHHHG-GG-SEEEE-TTGGGGST----CHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh-hhccEEEecCceeeecC----HHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcC-hHHHHHHHHHH
Confidence 56666655554332 33778888776433222 244777777888777765321 12 34788899999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC-------CHHHHHHHHHHHhcCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE-------AEEDRVGLLHTLATLP 195 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge-------t~ed~~~~l~~l~~l~ 195 (320)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+++.+- +|..+ +.+++.+.++.-.+.|
T Consensus 96 lGf~~IEiSdGti---------~l~~~~r~~~I~~~~~~Gf~v~~E--vG~K~~~~~~~~~~~~~i~~~~~dLeAG 160 (244)
T PF02679_consen 96 LGFDAIEISDGTI---------DLPEEERLRLIRKAKEEGFKVLSE--VGKKDPESDFSLDPEELIEQAKRDLEAG 160 (244)
T ss_dssp CT-SEEEE--SSS------------HHHHHHHHHHHCCTTSEEEEE--ES-SSHHHHTT--CCHHHHHHHHHHHHT
T ss_pred cCCCEEEecCCce---------eCCHHHHHHHHHHHHHCCCEEeec--ccCCCchhcccCCHHHHHHHHHHHHHCC
Confidence 9999998874332 235677788899999999876433 33322 2345555555555555
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Probab=81.82 E-value=41 Score=30.60 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCEEEEecccCC-CCCCchh-----HHHHHHHHHHhhhcCc-eEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRD-TIGRKTN-----FNQILEYVKDIRDMGM-EVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~-~~ge~~~-----~~~l~~~i~~~k~~~~-~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
+.+.++...+.|+..+.+...+-. ..-.|.. .+.+.++++.+++.+. .+.-..|.. ...+..+++.|+|.++
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~-~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT-QPILRDIANNGCFGFS 260 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc-hhhHHHHHHhCCCEEe
Confidence 334444556789887777532211 1111322 2445556666665443 333334533 4568889999999876
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
+.
T Consensus 261 ~d 262 (340)
T TIGR01463 261 VD 262 (340)
T ss_pred ec
Confidence 43
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. |
| >PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1 | Back alignment and domain information |
|---|
Probab=81.63 E-value=20 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-----hhHHHHHHHHHHhh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIR 103 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-----~~~~~l~~~i~~~k 103 (320)
.+.+++...+..+...|++.|++.+|+.+..|+. ..+.+..++++.++
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~ 134 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIR 134 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHH
Confidence 5678888888888899999999888876655431 11233556666555
|
7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B .... |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=81.55 E-value=9.1 Score=32.97 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
++.++.++.+.+.|++.+++.++.. +.+..+ +.++.++ .++++..+.|..+.+.+.++.+.|+|.|.++=
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~---g~~ad~----~~I~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP---GNHADL----KKIRDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC---CCCCcH----HHHHHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence 4556666666777877666543211 111122 3444444 46777788888888888888888888888863
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.50 E-value=7.5 Score=33.18 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~ 117 (320)
|++|||.+....+.+.|-+-+-+.+| +|..+--+.|.++.+.+.|++..+.+|..+
T Consensus 59 ~tLeeIi~~m~~a~~~Gk~VvRLhSG------DpsiYgA~~EQm~~L~~~gI~yevvPGVss 114 (254)
T COG2875 59 LTLEEIIDLMVDAVREGKDVVRLHSG------DPSIYGALAEQMRELEALGIPYEVVPGVSS 114 (254)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeecC------ChhHHHHHHHHHHHHHHcCCCeEEeCCchH
Confidence 89999999999999998777767664 477888999999999999999888899643
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=81.44 E-value=41 Score=30.37 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCeeeeeEEEEeCCCHHHHHHHHHHHh
Q 020848 118 KHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLA 192 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~ 192 (320)
.+.++.+.++|.|.|.+..-.. +..-+.-.. ..+.+...+.++.+++ .++++.+-+-.|..++..+..++++.+.
T Consensus 78 ~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~ 157 (319)
T TIGR00737 78 AEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAE 157 (319)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHH
Confidence 3445566778888887765332 211111111 1245556666666654 3566655554555444446677888888
Q ss_pred cCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHH-HcCCceEeeCCc
Q 020848 193 TLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF-LAGANSIFTGEK 271 (320)
Q Consensus 193 ~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~-~~Gan~~~~~~~ 271 (320)
+.| ++.+.+..-.+. .....+. .+..+...+...+-..+ ..|-.. ........+ ..||+.++.|-.
T Consensus 158 ~~G--~d~i~vh~r~~~-----~~~~~~~---~~~~i~~i~~~~~ipvi--~nGgI~-~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 158 DAG--AQAVTLHGRTRA-----QGYSGEA---NWDIIARVKQAVRIPVI--GNGDIF-SPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HhC--CCEEEEEccccc-----ccCCCch---hHHHHHHHHHcCCCcEE--EeCCCC-CHHHHHHHHHhhCCCEEEEChh
Confidence 887 667766532221 1111111 13333334433332111 222221 122334455 478999988744
Q ss_pred c
Q 020848 272 L 272 (320)
Q Consensus 272 ~ 272 (320)
.
T Consensus 225 ~ 225 (319)
T TIGR00737 225 A 225 (319)
T ss_pred h
Confidence 3
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=81.29 E-value=45 Score=30.79 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC----CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~----ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
+.+.+++.++.+.+.|++-+ ..+...+-. ......+.+..+-+..++.|+.+.++ ..+.+.++.+.+. +|.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~-r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~--v~d~~~~~~l~~~-vd~l 205 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLL-RGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISE--IVNPADVEVALDY-VDVI 205 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEE-EccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHHh-CCeE
Confidence 57889999999888887543 333222110 01123355555555555789887664 4778899999888 8888
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC--CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
.|+--.. .+ ...++.+.+.|.+| ++-.| -+.+|+...++.+..-| ...+.+.. .
T Consensus 206 kI~s~~~----------~n----~~LL~~~a~~gkPV----ilk~G~~~t~~e~~~Ave~i~~~G--n~~i~L~e----r 261 (360)
T PRK12595 206 QIGARNM----------QN----FELLKAAGRVNKPV----LLKRGLSATIEEFIYAAEYIMSQG--NGQIILCE----R 261 (360)
T ss_pred EECcccc----------cC----HHHHHHHHccCCcE----EEeCCCCCCHHHHHHHHHHHHHCC--CCCEEEEC----C
Confidence 8753111 11 24455555666554 33234 48999999999999887 33343321 1
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHhCCC-cee--ecCCcccccChhHHHHHHHcCCceEeeCCccccC----CC---CC
Q 020848 211 GTPLQDQK-PVEIWEMIRMIATARIVMPK-AMV--RLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT----PN---ND 279 (320)
Q Consensus 211 gt~~~~~~-~~~~~e~~~~~a~~R~~~p~-~~i--~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~----~~---~~ 279 (320)
|+..++.+ ..+. -++.+..++..+.- ..+ -.+.|...+.+.....++..||+.++....+-.. ++ .+
T Consensus 262 g~s~yp~~~~~~l--dl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~ 339 (360)
T PRK12595 262 GIRTYEKATRNTL--DISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMD 339 (360)
T ss_pred ccCCCCCCCCCCc--CHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCC
Confidence 22221111 1111 24444455543321 111 1122222233334456788899988776434211 11 35
Q ss_pred hhHHHHHHHH
Q 020848 280 FDADQLMFKV 289 (320)
Q Consensus 280 ~~~~~~~i~~ 289 (320)
+++..+|+.+
T Consensus 340 p~el~~l~~~ 349 (360)
T PRK12595 340 IPEFDRFLDE 349 (360)
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=81.19 E-value=15 Score=31.91 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+ .++...+.|.+.+++..-.... |.+...+ +++.+. ...+++.+..|..+.+.++.+.++|++++.++
T Consensus 32 ~p~~---~a~~~~~~g~~~lhivDLd~a~-g~~~n~~----~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvig 103 (243)
T TIGR01919 32 SLES---AAKWWEQGGAEWIHLVDLDAAF-GGGNNEM----MLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGG 103 (243)
T ss_pred CHHH---HHHHHHhCCCeEEEEEECCCCC-CCcchHH----HHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5544 4455566888888876432222 3344443 344433 34577888899999999999999999999887
Q ss_pred cccc
Q 020848 136 LDTS 139 (320)
Q Consensus 136 let~ 139 (320)
-.+.
T Consensus 104 T~a~ 107 (243)
T TIGR01919 104 TAAL 107 (243)
T ss_pred chhh
Confidence 6554
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=81.16 E-value=13 Score=31.92 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+++..=+.. .|.+.. .++++.+. ..++++.+-.|..+.+.++.+.++|.+++.++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n----~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDN----DEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCcc----HHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4455566667789999998643221 132333 34444444 34678888889999999999999999999887655
Q ss_pred c
Q 020848 139 S 139 (320)
Q Consensus 139 ~ 139 (320)
.
T Consensus 111 ~ 111 (233)
T cd04723 111 L 111 (233)
T ss_pred c
Confidence 4
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.12 E-value=7.3 Score=32.81 Aligned_cols=101 Identities=18% Similarity=0.115 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.++|+.+..++.+.+.|++.+-++- .- +.-.+.|+.+++.--++.+-.|. ++.++++++.++|.+.+--
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl------~s----p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL------RT----PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec------CC----CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence 6899999999999999999886642 11 23445556665321266666676 8999999999999876432
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHH
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 188 (320)
++-+ -+.++.+.+.|+.+..+++ |.-|+...+
T Consensus 92 -------------P~~~----~ev~~~a~~~~ip~~PG~~-----TptEi~~Al 123 (211)
T COG0800 92 -------------PGLN----PEVAKAANRYGIPYIPGVA-----TPTEIMAAL 123 (211)
T ss_pred -------------CCCC----HHHHHHHHhCCCcccCCCC-----CHHHHHHHH
Confidence 1222 2567888888887644443 455554443
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=42 Score=32.54 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCHHHHHHHHH----HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQ----KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~----~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++++.+. .+++.|...+.++. ...+ ....+.+.++++.+.+.|.. +.-|.|.++++.+.++.+.=
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~---EDa~-Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGC---EDGG-RSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEecc---cccc-ccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 56666666554 55567765454432 1112 24567788888888776644 45678998888777665431
Q ss_pred ---cC---eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 ---LT---AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ---ld---~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+. .+.+++ +...++.--..+.-.+.++|.+.--..+.|+||
T Consensus 278 ~~~~~~~~~i~I~~----------H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGE 324 (503)
T PLN03228 278 KANTPGIDDIVFSV----------HCHNDLGLATANTIAGICAGARQVEVTINGIGE 324 (503)
T ss_pred HHHhccccCceeEe----------cccCCcChHHHHHHHHHHhCCCEEEEecccccc
Confidence 11 122322 333444444555556668898844446778875
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=80.82 E-value=18 Score=32.37 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhh---hcCceEEEeCCCCCHHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR---DMGMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k---~~~~~i~~~~g~l~~e~l~~L~~a 127 (320)
.+.|+..+.++.+++. ....++|..=+ .... ...+-+.|++.+ +.|..+..-.|..+.++++++.+.
T Consensus 129 v~~ee~~~kI~Aa~~A~~~~d~~I~ART-Da~~----~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~ 199 (294)
T TIGR02319 129 ISTEEMTGKIEAAVEAREDEDFTIIART-DARE----SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDE 199 (294)
T ss_pred cCHHHHHHHHHHHHHhccCCCeEEEEEe-cccc----cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHh
Confidence 6788888888777663 22345553311 1111 112344444444 456664444567778888888775
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=80.72 E-value=11 Score=33.70 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++||+.+. .+.|++.+.+. +...+++-+.++.+++ ..+.+.++.| ++.+.+.++.+.|+|.|.+
T Consensus 205 tleea~eA----~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGG-It~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 205 TLEQVQEA----LEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGN-ITLETIRAVAETGVDYISS 270 (288)
T ss_pred CHHHHHHH----HHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 45555443 45788777663 2234566666666653 2455555544 7899999999999999988
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 271 g 271 (288)
T PRK07428 271 S 271 (288)
T ss_pred c
Confidence 6
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.71 E-value=41 Score=29.95 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+..-|.-.+.+...+ ..++.+..+++.+. +..+++.++..- .+.+.+++-.++|+++|.
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~---~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY---ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc---CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEE
Confidence 5778888888888888865554333222211 24566777777765 557776655432 467888888899999988
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eeeEEEEeCCC----------HHHHHHHHHHHhcCCCCCCee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEA----------EEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v--~~~~i~Glget----------~ed~~~~l~~l~~l~~~~~~v 201 (320)
+.-...+ . ..+.+...+..+.++..|+.+ .++.+-|..+. .-+..+..+++++.| ++.+
T Consensus 103 ~D~S~l~-~------eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tg--vD~L 173 (286)
T PRK06801 103 FDGSTLE-Y------EENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTG--IDAL 173 (286)
T ss_pred EcCCCCC-H------HHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHC--cCEE
Confidence 8533221 0 112334456677788888765 34443222111 113356667777787 7777
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
.+ .+-+..|.. ...+.++.+.+.++.. ..+-+..-.. | .++..+.-..+...|++.+-.+
T Consensus 174 Av-aiGt~Hg~y-~~~~~l~~e~l~~i~~----~~~~PLVlHG-G-Sgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 174 AV-AIGNAHGKY-KGEPKLDFARLAAIHQ----QTGLPLVLHG-G-SGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred Ee-ccCCCCCCC-CCCCCCCHHHHHHHHH----hcCCCEEEEC-C-CCCCHHHHHHHHHcCCcEEEeh
Confidence 77 443333332 2223455554333322 2232222222 1 2344444467788999988433
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=80.70 E-value=32 Score=28.67 Aligned_cols=180 Identities=11% Similarity=0.110 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh----hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k----~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
+++.+.++.+.+.|++-+.+--.+ .. ...+.+.++.++ ..++.+.++ +.++...++|+|.+.+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~---~~----~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~ 87 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG---LD----TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHL 87 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC---CC----HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEec
Confidence 345666777777899888773211 11 223333333333 346665443 5678888999999877
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
..+.. . ...++..++.+..+++ . -.|.++..+.. +.+ ++.+.+.++.|....+-
T Consensus 88 ~~~~~-----------~----~~~~~~~~~~~~~~g~--~---~~t~~e~~~a~----~~g--aD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 88 GQDDL-----------P----VADARALLGPDAIIGL--S---THTLEEAAAAL----AAG--ADYVGVGPIFPTPTKKD 141 (212)
T ss_pred CcccC-----------C----HHHHHHHcCCCCEEEE--e---CCCHHHHHHHh----HcC--CCEEEECCccCCCCCCC
Confidence 54321 0 1222333344433321 1 23655543333 455 78888877766432221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
. .+....+. +...+..+++..+-..+ ++.++.-...+.+|++.+..|..+... .++.+.++.+
T Consensus 142 ~-~~~~g~~~----~~~~~~~~~~~~v~a~G---GI~~~~i~~~~~~Ga~gv~~gs~i~~~--~d~~~~~~~l 204 (212)
T PRK00043 142 A-KAPQGLEG----LREIRAAVGDIPIVAIG---GITPENAPEVLEAGADGVAVVSAITGA--EDPEAAARAL 204 (212)
T ss_pred C-CCCCCHHH----HHHHHHhcCCCCEEEEC---CcCHHHHHHHHHcCCCEEEEeHHhhcC--CCHHHHHHHH
Confidence 1 11112222 22223333432233232 333444456778999999887644432 3444444433
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=80.50 E-value=33 Score=28.71 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCC-C---HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGML-E---KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l-~---~e~l~~L~~a 127 (320)
.+.+++.+.++.+.+.++..+++. |.+.+...+. ++..++.+.+. .|.. + ...+++..+.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~---------p~~v~~~~~~---l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~ 81 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVN---------PCFVPLAREA---LKGSGVKVCTVIGFPLGATTTEVKVAEAREAIAD 81 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc---------HHHHHHHHHH---cCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 689999999999999899999774 3233333332 23334443322 2322 1 2235566667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeC-CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG-EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glg-et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.|.+.+.+.-. .+ ..++++..++-+..+.+. |+.+.+ ++..+ .+++++....+.+.++| .+.|...
T Consensus 82 GAdevdvv~~~g-----~~-~~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~G--aD~IKTs 151 (203)
T cd00959 82 GADEIDMVINIG-----AL-KSGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAG--ADFIKTS 151 (203)
T ss_pred CCCEEEEeecHH-----HH-hCCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhC--CCEEEcC
Confidence 999887765331 11 134556566666665553 555544 55553 46788888999999998 6665553
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|-+.. ...+.+....+....+ ....+.+++|--. .+.....+.+||+++
T Consensus 152 -------TG~~~-~~at~~~v~~~~~~~~---~~v~ik~aGGikt--~~~~l~~~~~g~~ri 200 (203)
T cd00959 152 -------TGFGP-GGATVEDVKLMKEAVG---GRVGVKAAGGIRT--LEDALAMIEAGATRI 200 (203)
T ss_pred -------CCCCC-CCCCHHHHHHHHHHhC---CCceEEEeCCCCC--HHHHHHHHHhChhhc
Confidence 11211 2345554333333333 3345555554322 223345566787765
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=80.50 E-value=26 Score=31.59 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHH-HhccCeeccC
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK-KAGLTAYNHN 135 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~-~aGld~v~i~ 135 (320)
++.+.++.+.+.|+..+.+.+.... .+-+ -+..++.++.+++ .++++..+.|..+.+.+.++. ..|+|.|.++
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~-~~~~--~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA-QGYS--GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc-ccCC--CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 4566667777789988887643211 1110 0123566777773 578888888888888888887 6789999887
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.48 E-value=8.8 Score=35.58 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC-CCCHHHHHHHHHhccCeeccCcccc-H
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-R 140 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g-~l~~e~l~~L~~aGld~v~i~let~-~ 140 (320)
..++.+.+.|++-|+|-++ .| .-.+-+++++.+|+.-.+..+-.| .++.++.+.|.++|+|.+.++.-+. -
T Consensus 254 ~rl~ll~~aGvdvviLDSS----qG---nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSi 326 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSS----QG---NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSI 326 (503)
T ss_pred HHHHHhhhcCCcEEEEecC----CC---cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCce
Confidence 3455667789999988442 13 224678888999865433333333 3899999999999999998876443 1
Q ss_pred -HHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeee
Q 020848 141 -EFYSKIITTR-SYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 141 -~~~~~i~~~~-~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
-+.+.+.-+. .-..+.+..+.|+..|+++-.+
T Consensus 327 CiTqevma~GrpQ~TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 327 CITQKVMACGRPQGTAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred eeeceeeeccCCcccchhhHHHHHHhcCCceeec
Confidence 1122222122 3345678888999999886444
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.44 E-value=35 Score=28.94 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cC--ceEEEeCCC-CCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCTLGM-LEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~--~~i~~~~g~-l~~e~l~~L~~aGld~ 131 (320)
.+.|+.+..++.+.+.|++-+-++-- -| .-++.++.+++ .+ ..+.+-.|. ++.++++...++|.+.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~------~~----~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT------NP----FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC------Cc----cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 57899999999999999998876531 12 33445555552 22 235555565 8999999999999986
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+-- +.-+ -+.++.+++.|+.+ +.|. .|+.|+.... +.| .+.+.+++ .
T Consensus 92 ivs-------------P~~~----~~v~~~~~~~~i~~----iPG~-~T~~E~~~A~----~~G--ad~vklFP-----a 138 (213)
T PRK06552 92 IVS-------------PSFN----RETAKICNLYQIPY----LPGC-MTVTEIVTAL----EAG--SEIVKLFP-----G 138 (213)
T ss_pred EEC-------------CCCC----HHHHHHHHHcCCCE----ECCc-CCHHHHHHHH----HcC--CCEEEECC-----c
Confidence 542 1112 24567788888765 3333 3677776654 466 67777632 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
. ...++ .+...+..+|+..+-..+ ++..+.-...+.+|++.+..|..+
T Consensus 139 ~------~~G~~----~ik~l~~~~p~ip~~atG---GI~~~N~~~~l~aGa~~vavgs~l 186 (213)
T PRK06552 139 S------TLGPS----FIKAIKGPLPQVNVMVTG---GVNLDNVKDWFAAGADAVGIGGEL 186 (213)
T ss_pred c------cCCHH----HHHHHhhhCCCCEEEEEC---CCCHHHHHHHHHCCCcEEEEchHH
Confidence 1 12222 233345556653332222 333444466788999998777534
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=80.14 E-value=14 Score=31.70 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c-CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.++.++.+.+.|+..+.+-.. ..|.+. --++.|+.+++ . ++++..+.|..+.+.+.++.++|.|.|.++
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~---~~g~~~---a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAM---YPGKPY---ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeC---CCCCch---hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 45666777777788888877421 112221 12455666663 3 377878888888888877777888888775
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=80.11 E-value=48 Score=30.80 Aligned_cols=109 Identities=24% Similarity=0.380 Sum_probs=64.1
Q ss_pred CCHHHHHH----HHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQ----AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~----~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++++ .++.+++.|. .+.++. ...+ ....+++.++++.+.+.|.. +.-|.|.++++.+.++.+.=
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~-~v~~~~---ed~~-r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGL-YVSFSA---EDAS-RTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEEe---ccCC-CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHH
Confidence 45566665 4455566776 455432 1111 24567888888888876644 45678888888877665541
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
... +.+++ +...++.--+.+.-.+.++|...--..+.|+|+
T Consensus 184 ~~~~~~~l~~----------H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe 226 (378)
T PRK11858 184 VEAVDIPIEV----------HCHNDFGMATANALAGIEAGAKQVHTTVNGLGE 226 (378)
T ss_pred HHhcCCeEEE----------EecCCcCHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 112 22222 333455555555666677898755556778875
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=80.10 E-value=31 Score=28.15 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH-hhhcCceEEEeCCCC--------CHHHHHHHHHh
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD-IRDMGMEVCCTLGML--------EKHQAIELKKA 127 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~-~k~~~~~i~~~~g~l--------~~e~l~~L~~a 127 (320)
+.+.+.+.++.+.+.|++.+.+.+ .+++.+.. .....+++.+..|.. ..+.++..+++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 788999999999999998887653 23333222 222135544333321 35667777888
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc---CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA---GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 202 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 202 (320)
|.|.+.+..-. |... ..+.+...+.++.+.+. ++.+.+..+.+...+.+.+.+..+.+.+.+ ++.+.
T Consensus 78 Gad~i~v~~~~----~~~~--~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g--~~~iK 147 (201)
T cd00945 78 GADEIDVVINI----GSLK--EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG--ADFIK 147 (201)
T ss_pred CCCEEEEeccH----HHHh--CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC--CCEEE
Confidence 99988775322 1111 11355566666665554 677655554433235677777777676666 55444
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 320 | ||||
| 1r30_A | 369 | The Crystal Structure Of Biotin Synthase, An S- Ade | 9e-87 | ||
| 3cix_A | 348 | X-ray Structure Of The [fefe]-hydrogenase Maturase | 5e-07 | ||
| 3iiz_A | 348 | X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy | 8e-07 | ||
| 3ciw_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 8e-07 | ||
| 3t7v_A | 350 | Crystal Structure Of Methylornithine Synthase (Pylb | 1e-05 |
| >pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S- Adenosylmethionine-dependent Radical Enzyme Length = 369 | Back alignment and structure |
|
| >pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 | Back alignment and structure |
|
| >pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 | Back alignment and structure |
|
| >pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 | Back alignment and structure |
|
| >pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb) Length = 350 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Length = 369 | Back alignment and structure |
|---|
Score = 488 bits (1259), Expect = e-175
Identities = 165/293 (56%), Positives = 208/293 (70%), Gaps = 2/293 (0%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ TLLSIKTG C EDC YCPQSSRY TG++ ++LM + V+++A+KAK AGSTRFCM
Sbjct: 62 QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCM 121
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAW++ R + + + V+ ++ MG+E C TLG L + QA L AGL YNHNLDT
Sbjct: 122 GAAWKNPHER--DMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT 179
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 198
S EFY IITTR+Y ERL+TL+ VR+AGI VCSGGI+GLGE +DR GLL LA LPT P
Sbjct: 180 SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPP 239
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPIN L+ VKGTPL D V+ ++ IR IA ARI+MP + VRLSAGR + + QA+C
Sbjct: 240 ESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC 299
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAES 311
F+AGANSIF G KLLTTPN + D D +F+ LGL P+ + G+ +
Sbjct: 300 FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLE 352
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Length = 350 | Back alignment and structure |
|---|
Score = 307 bits (788), Expect = e-104
Identities = 52/291 (17%), Positives = 117/291 (40%), Gaps = 25/291 (8%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
V + C CS+C + R + +T + + + + K AG +
Sbjct: 58 RVFLNCFIYFS-TYCKNQCSFCYYNCRNEINRYR---LTMEEIKETCKTLKGAGFHMVDL 113
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137
+ N+ +E V+ ++ ++G+ + + G+++ ++ ++ G +
Sbjct: 114 TMGEDPYYYE--DPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQE 171
Query: 138 TS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT 196
T E Y K+ +S+D R+ + ++ G V G + G+G E + L ++T
Sbjct: 172 TYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN-- 229
Query: 197 HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA 256
P+ V + L +GTPL+ + +++I+ R++ PK ++ S +
Sbjct: 230 DPDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLE--GIDGMV 287
Query: 257 LCFLAGANSIFTG-------------EKLLTTPNNDFDADQLMFKVLGLTP 294
L AGAN + + ++ L + D + +++G+ P
Sbjct: 288 LRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMGMKP 338
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 1e-97
Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 27/295 (9%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
EV ++ + C ++C YC R + +K + MT + +++ A+ A + G+ +
Sbjct: 50 EVHIRAIIEF-SNVCRKNCLYCGLR-RDNKNLK-RYRMTPEEIVERARLAVQFGAKTIVL 106
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
+ + I + VK+I+ MG+ V +LG + + K+AG Y +T
Sbjct: 107 QSGEDP----YXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHET 162
Query: 139 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPT 196
+ + K+ S++ RL L ++E G +G ++GL G+ +D V L L
Sbjct: 163 ANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHD- 221
Query: 197 HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA 256
+ V I + TPL ++K + ++M+A RI++P + + + +
Sbjct: 222 -FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGRE 280
Query: 257 LCFLAGANSIFTG--------------EKLLTTPNND--FDADQLMFKVLGLTPK 295
+ GAN I K+ + M ++LG P
Sbjct: 281 ITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKPG 335
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 4e-07
Identities = 30/260 (11%), Positives = 69/260 (26%), Gaps = 69/260 (26%)
Query: 49 GVKG---QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM 105
GV G + + K + W + + +LE ++ +
Sbjct: 157 GVLGSGKTWV-----ALDVCLSYKV--QCKMDFKIFWL-NLKNCNSPETVLEMLQKL--- 205
Query: 106 GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA 165
+ + + + + +++ ++ Y+ L L +V+ A
Sbjct: 206 -----LYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 166 GI----NV-C-------SGGII-GLGEAEEDRVGLLHTLATLPTHPES---------VPI 203
N+ C + L A + L H TL T E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRP 315
Query: 204 NAL--LAVKGTPL-------QDQKPVEIWEMIRMIATARI--VMPKAMVRLSAGRVR--- 249
L + P + + W+ + + ++ ++ ++ L R
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 250 --FSM-------PEQALCFL 260
S+ P L +
Sbjct: 376 DRLSVFPPSAHIPTILLSLI 395
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 2e-04
Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 22/174 (12%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKEAGSTRFC 77
+C ++ C+ +C +C + G + + +++ + KA+ +
Sbjct: 67 HSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYK 126
Query: 78 M---------------GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC-CTLGML-EKHQ 120
A G + + + V++ G T G + E+ +
Sbjct: 127 GNPKVDKKKFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLE 186
Query: 121 AIELKKAGLTAYNHNLDT-SREFYSKIITTRSYD--ER-LETLKHVREAGINVC 170
+ + T ++ E Y+ + D ER L L+ +R+
Sbjct: 187 EMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPTRTV 240
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 320 | |||
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 100.0 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 100.0 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 100.0 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 99.92 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 99.9 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 99.88 | |
| 2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification en | 99.84 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 99.84 | |
| 2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.4 | 99.79 | |
| 3rfa_A | 404 | Ribosomal RNA large subunit methyltransferase N; r | 99.72 | |
| 2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-f | 99.62 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 99.47 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 98.65 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 98.57 | |
| 4fhd_A | 368 | Spore photoproduct lyase; partial TIM-barrel, DNA | 98.54 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 98.35 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 98.33 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 98.21 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 97.85 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 97.83 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 97.74 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 97.64 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 97.61 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 97.38 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 97.37 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 97.27 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.16 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.15 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.09 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 97.05 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 96.45 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 96.45 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 96.43 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 96.26 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 95.76 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 95.7 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 95.58 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 95.47 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.34 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 95.29 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 95.17 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 95.11 | |
| 2p0o_A | 372 | Hypothetical protein DUF871; structural genomics, | 94.86 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.84 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 94.82 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 94.78 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 94.75 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 94.58 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 94.43 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 94.35 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 94.3 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.2 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 94.12 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 93.97 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 93.88 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 93.76 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 93.7 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.58 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 93.48 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 93.45 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 93.43 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 92.54 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 92.41 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 92.29 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 92.26 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 92.25 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 91.93 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 91.81 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 91.25 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 91.09 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 90.95 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 90.91 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 90.83 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 90.55 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 90.49 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 90.41 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 90.29 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 90.03 | |
| 3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; DUF849 fa | 89.81 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 89.81 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 89.67 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 89.59 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 89.59 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 89.44 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 89.35 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 89.04 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 89.04 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 88.67 | |
| 2bmb_A | 545 | Folic acid synthesis protein FOL1; folate biosynth | 88.55 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 88.54 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 88.47 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 88.26 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 87.75 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 87.33 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 87.05 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 86.98 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 86.75 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 86.62 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 86.58 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 86.46 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 86.36 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 86.22 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 86.04 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 85.94 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 85.87 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 85.73 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 85.69 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 85.23 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 84.89 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 84.7 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 84.64 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 84.55 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 84.21 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 84.16 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 84.0 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 83.7 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 83.29 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 83.27 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 83.01 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 82.96 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 82.84 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 82.74 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 82.66 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 82.2 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 82.17 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 82.14 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 82.1 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 82.01 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 82.0 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 81.91 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 81.53 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 81.3 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 81.24 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 81.17 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 80.8 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 80.8 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 80.71 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 80.62 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 80.16 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 80.12 |
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=328.51 Aligned_cols=286 Identities=57% Similarity=0.944 Sum_probs=255.7
Q ss_pred hhccC-CCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch
Q 020848 12 SISSS-MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT 90 (320)
Q Consensus 12 r~~~~-~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~ 90 (320)
|+++| |++|.++.+++++|++|+++|.||.++.....+..++..+++|+|++.++.+.+.|++.|+|+||+.. +.+.
T Consensus 54 ~~~~~~~~~v~~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~~--p~~~ 131 (369)
T 1r30_A 54 HRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKN--PHER 131 (369)
T ss_dssp HHHHSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSS--CCTT
T ss_pred HHHhcCCCEEEEEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCCC--CCcC
Confidence 33444 79999999999779999999999998764322333456689999999999988899999999876421 2235
Q ss_pred hHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 91 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
.++++.++++.+++.++++.+++|.++++.++.|+++|++++++++|+.++.|+.+++++++++++++++.+++.|+.+.
T Consensus 132 ~~~~l~~ll~~ik~~g~~i~~t~G~l~~e~l~~L~~aGvd~v~i~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 211 (369)
T 1r30_A 132 DMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 211 (369)
T ss_dssp THHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHCCCCEEeecCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeee
Confidence 67899999999998888888899999999999999999999999999988999999998999999999999999999999
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccccc
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF 250 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~ 250 (320)
+++|+|++++.+++.++++++++++.++++++++.|+|.|||++.+.++++.++++++++.+|.++|+..++++++|.++
T Consensus 212 ~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~~i~i~~~~~~l 291 (369)
T 1r30_A 212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQM 291 (369)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGS
T ss_pred eeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEeecchhhc
Confidence 99999999999999999999999974478999999999999999988889999999999999999999999999999988
Q ss_pred ChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCC
Q 020848 251 SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSF 299 (320)
Q Consensus 251 ~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~ 299 (320)
.+..++.++.+|||+++.|+++.++++++++++.++|+++|+.|.+|..
T Consensus 292 ~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~g~~~~~~~~ 340 (369)
T 1r30_A 292 NEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAV 340 (369)
T ss_dssp CHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCCC-
T ss_pred ChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHHcCCCeecccc
Confidence 8777899999999999999989999999999999999999999999975
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=326.98 Aligned_cols=283 Identities=18% Similarity=0.304 Sum_probs=244.9
Q ss_pred HhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc
Q 020848 10 LFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK 89 (320)
Q Consensus 10 ~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~ 89 (320)
..|++++|+.|+++.+|+ +|++|+++|.||+++... ...++. +++|+|++.++.+.+.|++.|+|+||.. |
T Consensus 49 ~~r~~~~g~~v~~~~~i~-~t~~C~~~C~fC~~~~~~--~~~~~~-ls~eei~~~~~~~~~~G~~~i~l~gGe~-----p 119 (350)
T 3t7v_A 49 KVRDHYFGNRVFLNCFIY-FSTYCKNQCSFCYYNCRN--EINRYR-LTMEEIKETCKTLKGAGFHMVDLTMGED-----P 119 (350)
T ss_dssp HHHHHHHTTEEEEEEEEE-EECCCCCCCTTCTTCTTS--CCCCCB-CCHHHHHHHHHHHTTSCCSEEEEEECCC-----H
T ss_pred HHHHHHCCCEEEEEEeee-cCCCcCCCCCcCCCcCcC--CCCcee-CCHHHHHHHHHHHHHCCCCEEEEeeCCC-----C
Confidence 456677899999999999 699999999999997642 334455 8999999999999889999999987642 3
Q ss_pred hh---HHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHH
Q 020848 90 TN---FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE 164 (320)
Q Consensus 90 ~~---~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~ 164 (320)
.. .+++.++++.+|+ .++.+.+++|.++++.+++|+++|++++.+++|+. +++|+.+++++++++++++++.+++
T Consensus 120 ~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~ 199 (350)
T 3t7v_A 120 YYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQ 199 (350)
T ss_dssp HHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33 4788999999884 57888889999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 165 AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 165 ~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
.|+++++++|+|++||.+|+.++++++++++ ++++++++|+|.||||+++.++++.++.+++++++|+++|+..|+.+
T Consensus 200 ~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~--~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~ 277 (350)
T 3t7v_A 200 QGYCVEDGILTGVGNDIESTILSLRGMSTND--PDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPAS 277 (350)
T ss_dssp HTCEEEEEEEESSSCCHHHHHHHHHHHHHTC--CSEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEE
T ss_pred cCCeEccceEeecCCCHHHHHHHHHHHHhCC--CCEEEecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCcccc
Confidence 9999999999999999999999999999998 78999999999999999988888999999999999999999766653
Q ss_pred CcccccChhHHHHHHHcCCceEee---CC----ccccC------CCCChhHHHHHHHHcCCCcCCCCCCcCCcc
Q 020848 245 AGRVRFSMPEQALCFLAGANSIFT---GE----KLLTT------PNNDFDADQLMFKVLGLTPKAPSFHEGEAN 305 (320)
Q Consensus 245 ~g~~~~~~~~~~~~~~~Gan~~~~---~~----~~~~~------~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 305 (320)
|...+......++.+|||++.. .+ +.... ..++.++++++|+++||+|++|+|.|++..
T Consensus 278 --~~~~g~~~~~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~r~~~y~~~~ 349 (350)
T 3t7v_A 278 --LDLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMGMKPARQADFEAVLG 349 (350)
T ss_dssp --HHHHHHHHHHHHHHTTCCEEEEECCSSCCCCCSSCTTTTCSSCCCCHHHHHHHHHHHTCEECCHHHHHTTCC
T ss_pred --ccccChhHHHHHHhcCCceecCCCCCCCCCCCCCCCcccchhccCCHHHHHHHHHHcCCccccHHHHHHHhc
Confidence 5544445678899999999843 33 11111 246899999999999999999999999864
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=295.51 Aligned_cols=283 Identities=21% Similarity=0.305 Sum_probs=245.1
Q ss_pred hHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 8 TLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.+.|++++|+.|+++.+++ .|++|+++|.||.++... ....++. +++|+|++.++.+.+.|++.|+|+||..
T Consensus 39 A~~ir~~~~g~~v~~~~~i~-~t~~C~~~C~fC~~~~~~-~~~~~~~-ls~eei~~~i~~~~~~g~~~i~~~gGe~---- 111 (348)
T 3iix_A 39 ADEIRRKYVGDEVHIRAIIE-FSNVCRKNCLYCGLRRDN-KNLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGED---- 111 (348)
T ss_dssp HHHHHHHHHCSEEEEEEEEE-EECCCSCCCTTCTTCTTC-CSSCCCB-CCHHHHHHHHHHHHHTTCSEEEEEESCC----
T ss_pred HHHHHHHHcCCEEEEEEEeE-ecCCcCCcCccCCCCCCC-CCcCcee-CCHHHHHHHHHHHHHCCCCEEEEEeCCC----
Confidence 34456677899999999999 599999999999987532 2233444 8999999999999999999999987642
Q ss_pred Cchh-HHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc
Q 020848 88 RKTN-FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA 165 (320)
Q Consensus 88 e~~~-~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~ 165 (320)
|.. .+++.++++.+++.++.+.+++|.++++.++.|+++|++.+.+++|+. +++|+.+++++++++++++++.+++.
T Consensus 112 -p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~ 190 (348)
T 3iix_A 112 -PYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL 190 (348)
T ss_dssp -GGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT
T ss_pred -CCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh
Confidence 322 388999999999768888889999999999999999999999999999 99999999988999999999999999
Q ss_pred CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 166 GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 166 Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
|+.+.+++|+|+ +++.+++.++++++++++ ++++.+++|+|.|||++.+.++.+.++.+++++++|+++|+..++++
T Consensus 191 Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~--~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~ 268 (348)
T 3iix_A 191 GYETGAGSMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPAT 268 (348)
T ss_dssp TCEEEECBEESCTTCCHHHHHHHHHHHHHHT--CSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCC
T ss_pred CCeeccceEEeCCCCCHHHHHHHHHHHHhcC--CCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhc
Confidence 999999999999 999999999999999998 78999999999999999998889999999999999999999989988
Q ss_pred CcccccChhHHHHHHHcCCceEeeC---Ccc-----------cc--CCCCChhHHHHHHHHcCCCcCCCCCC
Q 020848 245 AGRVRFSMPEQALCFLAGANSIFTG---EKL-----------LT--TPNNDFDADQLMFKVLGLTPKAPSFH 300 (320)
Q Consensus 245 ~g~~~~~~~~~~~~~~~Gan~~~~~---~~~-----------~~--~~~~~~~~~~~~i~~~G~~p~~~~~~ 300 (320)
++|..+.+..+..++.+|||+++.. ..| .+ ....+.+++.++|+++|+.|....=+
T Consensus 269 ~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 340 (348)
T 3iix_A 269 TAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKPGRDWGG 340 (348)
T ss_dssp HHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCCTTTTSCTTCHHHHHHHHHHHTTCEECSSCCC
T ss_pred chhhhcCHHHHHHHHhcCCcEEeCCCCchhcccccccCCCCcccCCCchhhHHHHHHHHHHcCCEeCCCCCC
Confidence 8887777788889999999999732 111 11 12345889999999999999987433
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=192.11 Aligned_cols=197 Identities=15% Similarity=0.223 Sum_probs=140.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k 103 (320)
.+. .+++|+++|.||.++... + ..+.+++++|+++++.+.+.|++.|.|+|+....+|.+. ..+.+.++++.++
T Consensus 7 ~v~-is~GC~~~C~fC~~~~~~--g--~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~ 81 (304)
T 2qgq_A 7 YVK-ISDGCDRGCTFCSIPSFK--G--SLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLN 81 (304)
T ss_dssp EEE-SBCCC---------------C--CCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHH
T ss_pred EEE-ECCCCCCcCccCCccccC--C--CceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHH
Confidence 455 689999999999886432 2 234479999999999999999999999875444333211 1245666666766
Q ss_pred hc-Cce-E--E-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeeeE
Q 020848 104 DM-GME-V--C-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSGG 173 (320)
Q Consensus 104 ~~-~~~-i--~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~--~Gi~v~~~~ 173 (320)
+. ++. + . +++..++++.++.|+++| ++++.+++|+. +++++.++++.++++++++++.+++ .|+.+.+++
T Consensus 82 ~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~~ 161 (304)
T 2qgq_A 82 SLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSI 161 (304)
T ss_dssp TSSSSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hcCCCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 54 553 3 2 344568999999999999 89999999999 9999999999999999999999999 688999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 228 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~ 228 (320)
|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...+.
T Consensus 162 IvG~PgEt~ed~~~t~~~l~~l~--~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r 216 (304)
T 2qgq_A 162 IVGFPGETEEDFEELKQFVEEIQ--FDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRR 216 (304)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCC-----------CCCHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeeCCCCChhHhCcCCCCHHHHHHH
Confidence 9999 999999999999999998 889999999999999988765 4565543333
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=182.81 Aligned_cols=204 Identities=21% Similarity=0.263 Sum_probs=162.8
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCC---CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRY---DTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~---~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~ 92 (320)
||..+.. ..++ .|++||++|.||...... .........++.|++.+.++.+.+.|++.|.|+| |||+..
T Consensus 9 ~gr~~~~-l~i~-~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tG------GEPll~ 80 (340)
T 1tv8_A 9 LGRPIRD-LRLS-VTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG------GEPLMR 80 (340)
T ss_dssp TSCBCCE-EEEE-CCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES------SCGGGS
T ss_pred CCCccCe-EEEE-eCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeC------CCccch
Confidence 4655543 3445 699999999999775411 0011234559999999999999889999998876 567777
Q ss_pred HHHHHHHHHhhhcCc--eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHcCC
Q 020848 93 NQILEYVKDIRDMGM--EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGI 167 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~--~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~Gi 167 (320)
+++.++++.+++.+. .+ .+|||.+..+.++.|+++|++.|.+|+|+. ++.|+.+++.. ++++++++++.+++.|+
T Consensus 81 ~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~ 160 (340)
T 1tv8_A 81 RDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL 160 (340)
T ss_dssp TTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 788999999986643 43 568898777899999999999999999999 89999998877 99999999999999999
Q ss_pred eeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC-CCCCCCCHHHHHHHHH
Q 020848 168 NVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-QDQKPVEIWEMIRMIA 230 (320)
Q Consensus 168 ~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~-~~~~~~~~~e~~~~~a 230 (320)
.+.+++++..++|.+++.++++++++++ ++ +.+..|+|.++++. ......+.+++++.+.
T Consensus 161 ~v~i~~vv~~g~n~~ei~~~~~~~~~~g--~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~ 221 (340)
T 1tv8_A 161 NVKVNVVIQKGINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE 221 (340)
T ss_dssp EEEEEEEECTTTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHH
T ss_pred CEEEEEEEeCCCCHHHHHHHHHHHHhcC--Ce-EEEEEeeEcCCCccchhhcCCCHHHHHHHHH
Confidence 9999888855789999999999999998 54 78888999987653 3234567777766655
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=189.62 Aligned_cols=202 Identities=15% Similarity=0.154 Sum_probs=155.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----CCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~----g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
++.++|+.+|.||.+....... ........+.+.++++.+.+. ++..++|+||+ ++.. ..+.+.++++.++
T Consensus 57 ihIpfC~~~C~yC~~~~~~~~~-~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGt-pt~l---~~~~l~~ll~~i~ 131 (457)
T 1olt_A 57 VHIPFCHKLCYFCGCNKIVTRQ-QHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGT-PTYL---NKAQISRLMKLLR 131 (457)
T ss_dssp EEECEESSCCTTCCSSCEECSC-THHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESC-GGGS---CHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCCCCceeccCC-cchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-cccC---CHHHHHHHHHHHH
Confidence 3445799999999986532111 111112467788888766543 35678887754 3221 2355666666665
Q ss_pred h---c----CceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEE
Q 020848 104 D---M----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGI 174 (320)
Q Consensus 104 ~---~----~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i 174 (320)
+ . .+.+.++++.++++.++.|+++|+++|++++|+. +++++.+++++++++++++++.+++.|+. +++++|
T Consensus 132 ~~~~~~~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI 211 (457)
T 1olt_A 132 ENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLI 211 (457)
T ss_dssp HHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HhCCCCCCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 1 2335677788999999999999999999999999 99999999999999999999999999998 999999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-----CCCCCHHHHHHHHHHHHHhC
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-----QKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-----~~~~~~~e~~~~~a~~R~~~ 236 (320)
+|+ |||.+++.++++++.+++ +++++++.|.|.|+|+... ...++.++..+++..+...+
T Consensus 212 ~GlPget~e~~~~tl~~~~~l~--~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L 277 (457)
T 1olt_A 212 YGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFL 277 (457)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHH
Confidence 999 999999999999999998 8999999999999987643 23467777777776654443
|
| >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-20 Score=165.87 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=154.8
Q ss_pred cc-CCCCCCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHc--------------------CCCEEEEecccCCCC
Q 020848 29 KT-GGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEA--------------------GSTRFCMGAAWRDTI 86 (320)
Q Consensus 29 ~t-~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eei~~~~~~~~~~--------------------g~~~i~l~~g~~~~~ 86 (320)
.+ ++||++|.||........+ ......+++++|++.+...... .++.|.|.+|
T Consensus 76 ~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sgg----- 150 (342)
T 2yx0_A 76 PVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLS----- 150 (342)
T ss_dssp SCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSS-----
T ss_pred eChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCC-----
Confidence 45 6999999999875321110 1123457899999887654321 2466888643
Q ss_pred CCchhHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCC---CCCHHHHHHHH
Q 020848 87 GRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIIT---TRSYDERLETL 159 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i 159 (320)
|||+..+++.++++.+++.++.+ ..|||.+ ++.++.|+++| ++.+.+++|+. ++.++.+++ +.+++++++++
T Consensus 151 GEPll~~~l~~ll~~~~~~g~~i~l~TNG~~-~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i 229 (342)
T 2yx0_A 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTI-PERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFL 229 (342)
T ss_dssp SCGGGSTTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHHCCCcEEEEcCCCc-HHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHH
Confidence 56766678999999998878875 4578887 88899999988 99999999999 899999886 45799999999
Q ss_pred HHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC--CCCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 160 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT--PLQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 160 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt--~~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
+.+++.|+++.+.+++..|+|.+++.++++++++++ ++.+.+.+|.|.+++ ++.....++.+++.++...++..+|
T Consensus 230 ~~l~~~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~--~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~ 307 (342)
T 2yx0_A 230 ELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKAR--PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLP 307 (342)
T ss_dssp HHHTTCSSEEEEEEEECTTTTCCCHHHHHHHHHHHC--CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCT
T ss_pred HHHHhCCCCEEEEEEEECCccHHHHHHHHHHHHHcC--CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhcc
Confidence 999999999888888855788888999999999997 788998888887643 4434456788898888888887776
Q ss_pred Cc
Q 020848 238 KA 239 (320)
Q Consensus 238 ~~ 239 (320)
..
T Consensus 308 ~~ 309 (342)
T 2yx0_A 308 GY 309 (342)
T ss_dssp TE
T ss_pred CC
Confidence 53
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=157.76 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=149.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHH-HHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~-l~~~i~~~k~ 104 (320)
.|++||++|.||..+.... ......++++++++.++..... ++..|.|+| |||+..++ +.++++.+++
T Consensus 25 ~t~~Cn~~C~~C~~~~~~~--~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~G------GEP~l~~~~l~~l~~~~~~ 96 (245)
T 3c8f_A 25 FFQGCLMRCLYCHNRDTWD--THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKK 96 (245)
T ss_dssp EESCCSCCCTTCSCGGGCC--TTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEE------SCGGGGHHHHHHHHHHHHT
T ss_pred EeCCCCCCCCCCCCchhcc--cccCccCCHHHHHHHHHHhhhhhcCCCCeEEEEC------CCcCCCHHHHHHHHHHHHH
Confidence 5789999999998753211 1123347899999999876653 467888876 45766666 6899999997
Q ss_pred cCceE-EEeCCCC--CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--C
Q 020848 105 MGMEV-CCTLGML--EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--G 178 (320)
Q Consensus 105 ~~~~i-~~~~g~l--~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--g 178 (320)
.++.+ ..|||.+ +.+.+++|.++ ++.+.+++|+. ++.++.+++ .++++++++++.+++.|+++.+.+++.. +
T Consensus 97 ~~~~i~i~Tng~~~~~~~~~~~l~~~-~~~v~isld~~~~~~~~~~~~-~~~~~~~~~i~~l~~~g~~v~i~~~~~~g~~ 174 (245)
T 3c8f_A 97 EGIHTCLDTNGFVRRYDPVIDELLEV-TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFAKYLANKNVKVWIRYVVVPGWS 174 (245)
T ss_dssp TTCCEEEEECCCCCCCCHHHHHHHHT-CSEEEEECCCSSHHHHHHHHS-SCSHHHHHHHHHHHHHTCCEEEEEEECTTTT
T ss_pred cCCcEEEEeCCCcCcCHHHHHHHHHh-CCEEEEeCCCCCHHHhhhccC-CCHHHHHHHHHHHHhcCCEEEEEEeecCCCC
Confidence 78774 4578887 88999999998 99999999999 899999875 4579999999999999998777766533 4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC---------CCCCCCCCCHHHHHHHHHHHH
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt---------~~~~~~~~~~~e~~~~~a~~R 233 (320)
++.+++.++++++.+++. ...+.+.+|.|.+++ ++.+.++++.+++.++...++
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
T 3c8f_A 175 DDDDSAHRLGEFTRDMGN-VEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILE 237 (245)
T ss_dssp CCHHHHHHHHHHHHHHCC-EEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHH
Confidence 678999999999999972 267888888886643 334456778888777777665
|
| >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=158.92 Aligned_cols=198 Identities=16% Similarity=0.252 Sum_probs=130.8
Q ss_pred EEEeeccc-CCCCCCCCCCCCCCCCCCC-----CCCcCCCCHHHHHHHHHHHHH------c---------------CCCE
Q 020848 23 CTLLSIKT-GGCSEDCSYCPQSSRYDTG-----VKGQKLMTKDAVMQAAQKAKE------A---------------GSTR 75 (320)
Q Consensus 23 ~~~l~~~t-~~C~~~C~fC~~~~~~~~~-----~~~~~~~s~eei~~~~~~~~~------~---------------g~~~ 75 (320)
+..+. .| .+||++|.||........+ ......++++++++.+..... . ..+.
T Consensus 52 ~l~i~-~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~ 130 (311)
T 2z2u_A 52 CIQCT-PSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKH 130 (311)
T ss_dssp EEEEE-SCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCE
T ss_pred eEEec-cChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCE
Confidence 34555 56 7999999999854211101 112345899999887654421 1 2456
Q ss_pred EEEecccCCCCCCchhHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC--CC
Q 020848 76 FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RS 151 (320)
Q Consensus 76 i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~--~~ 151 (320)
+.|.+| |||+.++++.++++.+++.|+.+ ..|||.+ ++.++.| |++.+.+++|+. ++.|+.+++. .+
T Consensus 131 i~~s~g-----GEPll~~~l~~li~~~~~~g~~~~l~TNG~~-~~~l~~L---~~~~v~isld~~~~~~~~~i~~~~~~~ 201 (311)
T 2z2u_A 131 VAISLS-----GEPTLYPYLDELIKIFHKNGFTTFVVSNGIL-TDVIEKI---EPTQLYISLDAYDLDSYRRICGGKKEY 201 (311)
T ss_dssp EEECSS-----SCGGGSTTHHHHHHHHHHTTCEEEEEECSCC-HHHHHHC---CCSEEEEECCCSSTTTC----CCCHHH
T ss_pred EEEeCC-----cCccchhhHHHHHHHHHHCCCcEEEECCCCC-HHHHHhC---CCCEEEEEeecCCHHHHHHHhCCccch
Confidence 777632 57877788999999999878874 4678877 5555555 899999999999 8999998876 57
Q ss_pred HHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC--CCCCCCCHHHHHHHH
Q 020848 152 YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL--QDQKPVEIWEMIRMI 229 (320)
Q Consensus 152 ~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~--~~~~~~~~~e~~~~~ 229 (320)
+++++++++.+++.| .+.+.+++..|.++ ++.++++++.+++ ++.+.+.+|+|.++++. .....++.+++.+..
T Consensus 202 ~~~v~~~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~--~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~ 277 (311)
T 2z2u_A 202 WESILNTLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLA 277 (311)
T ss_dssp HHHHHHHHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcC--CCEEEEEeeEEccccccccccccCCCHHHHHHHH
Confidence 999999999999999 87777766456676 8889999999987 78999999999987763 223567888888877
Q ss_pred HHHHH
Q 020848 230 ATARI 234 (320)
Q Consensus 230 a~~R~ 234 (320)
..++.
T Consensus 278 ~~l~~ 282 (311)
T 2z2u_A 278 KMLDE 282 (311)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76653
|
| >3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-16 Score=144.55 Aligned_cols=198 Identities=16% Similarity=0.217 Sum_probs=147.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----------cCCCEEEEecccCCCCCCchh-HHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----------AGSTRFCMGAAWRDTIGRKTN-FNQILE 97 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----------~g~~~i~l~~g~~~~~ge~~~-~~~l~~ 97 (320)
.+.+||++|.||..... + ..+.++++||++.+..+.. .+++.|.|.|+ |||+. ++.+.+
T Consensus 121 sq~GCnl~C~fC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~Gg-----GEPLln~d~v~~ 190 (404)
T 3rfa_A 121 SQVGCALECKFCSTAQQ---G--FNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGM-----GEPLLNLNNVVP 190 (404)
T ss_dssp CEEECSSCCTTCGGGTT---C--EEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSS-----SCGGGCHHHHHH
T ss_pred eCCCCCCcCCCCCCCCC---C--CCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCC-----CCcccCHHHHHH
Confidence 56899999999976531 2 1234899999998876543 24778988764 57754 578999
Q ss_pred HHHHhhh-cCc-----eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHH-HHHc
Q 020848 98 YVKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKH-VREA 165 (320)
Q Consensus 98 ~i~~~k~-~~~-----~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~-a~~~ 165 (320)
+++.+++ .|+ .+ ..|+|.+ +.+++|.+.+...+.+++++. ++.|+.+.+ +.++++++++++. +.+.
T Consensus 191 ~i~~lk~~~Gl~~s~r~itlsTnG~~--p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~~~le~vl~ai~~~~~~~ 268 (404)
T 3rfa_A 191 AMEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKS 268 (404)
T ss_dssp HHHHHHSTTTTCCCGGGEEEEESCCH--HHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcCcCCCceEEECCCcH--HHHHHHHHhhcceEEecccCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHh
Confidence 9999996 466 54 4578976 468888888655678999999 899999875 4589999999955 5566
Q ss_pred CC---eeeeeE--EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCce
Q 020848 166 GI---NVCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 240 (320)
Q Consensus 166 Gi---~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~ 240 (320)
|. ++.+.. +-|.+++++++.+++++++.++ ..|.+.+|.|++++++ ++++.+++.+....++...-...
T Consensus 269 g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~~---~~ps~e~i~~f~~iL~~~Gi~vt 342 (404)
T 3rfa_A 269 NANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLMSYGFTTI 342 (404)
T ss_dssp TTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCCC---CBCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCCC---CCCCHHHHHHHHHHHHHcCCcEE
Confidence 76 655544 4456788999999999999886 3788899999887654 56778887777777765444444
Q ss_pred eecC
Q 020848 241 VRLS 244 (320)
Q Consensus 241 i~~~ 244 (320)
++.+
T Consensus 343 iR~~ 346 (404)
T 3rfa_A 343 VRKT 346 (404)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 4443
|
| >2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-15 Score=136.88 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=131.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHH--HHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~ 101 (320)
.+. .|++||++|.||...... + .....++.+++.+.++.+.+ .|++.|.|+|| ||+.+++ +.++++.
T Consensus 118 ~l~-vT~~Cnl~C~yC~~~~~~--~-~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGG------EPll~~d~~L~~il~~ 187 (416)
T 2a5h_A 118 LLL-ITDMCSMYCRHCTRRRFA--G-QSDDSMPMERIDKAIDYIRNTPQVRDVLLSGG------DALLVSDETLEYIIAK 187 (416)
T ss_dssp EEE-EESCCSSCCTTCTTTTTT--T-SSSSBCCHHHHHHHHHHHHTCTTCCEEEEEES------CTTSSCHHHHHHHHHH
T ss_pred EEe-cCCCccccCcCCCCcccC--C-CccCCCCHHHHHHHHHHHHhcCCCcEEEEECC------CCCCCCHHHHHHHHHH
Confidence 344 589999999999765321 1 12234899999999998887 68999988874 4555444 7888888
Q ss_pred hhhc-Cce-E-EEeCC------CCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeee
Q 020848 102 IRDM-GME-V-CCTLG------MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 102 ~k~~-~~~-i-~~~~g------~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
+++. ++. + ..|+| .++++.++.|+++ +.+.+++++. + +.+. ++++++++.++++|+.+.+
T Consensus 188 l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~-----~~v~~ai~~L~~aGi~v~i 257 (416)
T 2a5h_A 188 LREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT-----EESTRACQLLADAGVPLGN 257 (416)
T ss_dssp HHTSTTCCEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC-----HHHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCccEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh-----HHHHHHHHHHHHcCCEEEE
Confidence 8765 443 3 35566 3689999999998 7888988886 5 2332 8899999999999998777
Q ss_pred eEEE--EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 172 GGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 172 ~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
..++ |.+++.+++.++++++.+++ +....++.+.+.+|+++.. .+..+...++..++.
T Consensus 258 ~~vll~GvNd~~e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~---~~~~~~~eil~~l~~ 317 (416)
T 2a5h_A 258 QSVLLRGVNDCVHVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFR---TPVSKGIEIIEGLRG 317 (416)
T ss_dssp EEECCTTTTCSHHHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGC---CCHHHHHHHHHTTBT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEeecCCCCCccccc---CCcccHHHHHHHHHH
Confidence 6665 56788888999999999998 4433333333346776433 345555555554443
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-13 Score=108.31 Aligned_cols=146 Identities=13% Similarity=0.016 Sum_probs=112.4
Q ss_pred CCCchhHHHH-HHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHH
Q 020848 86 IGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHV 162 (320)
Q Consensus 86 ~ge~~~~~~l-~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a 162 (320)
+|||+.++++ .++++.+++.|+.+ ..|||.++++.++.|.+. +|.+.+++++. ++.|+.+++ .++++++++++.+
T Consensus 11 GGEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~-~d~v~isld~~~~~~~~~~~g-~~~~~i~~~i~~l 88 (182)
T 3can_A 11 GGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD-VPNELILKNIRRV 88 (182)
T ss_dssp SSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-SCSHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhh-CCEEEEECCCCCHHHHHHHhC-CCHHHHHHHHHHH
Confidence 3688888887 59999999878774 567999999999999988 99999999999 899998874 4579999999999
Q ss_pred HHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcC-CCCC-CeeeeeeeeecCCCCC---------CCCCCCCHHH--HHH
Q 020848 163 REAGINVCSGGIIGL--GEAEEDRVGLLHTLATL-PTHP-ESVPINALLAVKGTPL---------QDQKPVEIWE--MIR 227 (320)
Q Consensus 163 ~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l-~~~~-~~v~~~~~~p~~gt~~---------~~~~~~~~~e--~~~ 227 (320)
.+.|+.+.+.+++-. +++.+++.++++++.++ + + ..+.+.+|.|.+...+ .+.++++.++ +.+
T Consensus 89 ~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~~~e~~~l~~ 166 (182)
T 3can_A 89 AEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQ 166 (182)
T ss_dssp HHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC------------------CCBCCCHHHHHH
T ss_pred HhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcCcccCCCCCCHHHHHHHH
Confidence 999988777666533 47889999999999999 7 6 7899999999875432 2344555555 667
Q ss_pred HHHHHHHh
Q 020848 228 MIATARIV 235 (320)
Q Consensus 228 ~~a~~R~~ 235 (320)
....++..
T Consensus 167 ~~~~~~~~ 174 (182)
T 3can_A 167 CIQILTDY 174 (182)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66666654
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-06 Score=74.09 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++.|+.++.++.+.+.|++.|-++++..+ ...|.. .+..+.++.+++. +..+..-. ...+.++...++|++.+.+
T Consensus 24 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~-~~~p~~-~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~ag~~~v~i 99 (298)
T 2cw6_A 24 VSTPVKIKLIDMLSEAGLSVIETTSFVSP-KWVPQM-GDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAAGAKEVVI 99 (298)
T ss_dssp CCHHHHHHHHHHHHHTTCSEECCEECCCT-TTCGGG-TTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCcCEEEECCCcCc-cccccc-CCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHCCCCEEEE
Confidence 89999999999999999999988764332 112322 3445566666543 44432211 3588899999999999999
Q ss_pred CccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEe------CCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 135 NLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGL------GEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 135 ~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl------get~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
...+.+ .....+++. ..++...+.++.+++.|+++..++++.+ ..+.+.+.+.++.+.++| ++.+.+.
T Consensus 100 ~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l~- 176 (298)
T 2cw6_A 100 FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG--CYEISLG- 176 (298)
T ss_dssp EEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTT--CSEEEEE-
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEec-
Confidence 776663 344455443 3577888889999999999887776432 137889999999999998 6666553
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEee---C--C-ccc--cCC
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---G--E-KLL--TTP 276 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~--~-~~~--~~~ 276 (320)
+|- ...++.++.+++...+..+|+..+.+-. ...++.-.....++.+|+..+-. | + .|. .++
T Consensus 177 -----DT~----G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aG 247 (298)
T 2cw6_A 177 -----DTI----GVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASG 247 (298)
T ss_dssp -----ETT----SCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCC
T ss_pred -----CCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcC
Confidence 221 2367888888888888777753332210 00111112235788999987722 2 1 122 244
Q ss_pred CCChhHHHHHHHHcCCCc
Q 020848 277 NNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 277 ~~~~~~~~~~i~~~G~~p 294 (320)
....++++.+++..|+.+
T Consensus 248 N~~~E~lv~~l~~~g~~~ 265 (298)
T 2cw6_A 248 NLATEDLVYMLEGLGIHT 265 (298)
T ss_dssp BCBHHHHHHHHHHHTCBC
T ss_pred ChhHHHHHHHHHhcCCCC
Confidence 567889999999988864
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.57 E-value=9e-06 Score=71.57 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++.|+.++.++.+.+.|++.|-+++...+.. -| .+.+..+.++.+++. ++++..-. .+.+.+++..++|++.|.+
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~-~p-~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~i 98 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEATSFVSPKW-VP-QLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIAV 98 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEEECSCTTT-CG-GGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEccCcCccc-cc-cccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999998865322111 02 123566777777644 56653322 4688999999999999988
Q ss_pred CccccHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEE--EEe----CCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 135 NLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGI--IGL----GEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 135 ~let~~~-~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i--~Gl----get~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
.+.+.+. ....+++. .+++...+.++.+++.|+.+...+. +|. .-+++++.+.++.+.+.| ++.+.+.-
T Consensus 99 ~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l~D 176 (295)
T 1ydn_A 99 FISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLG--CHEVSLGD 176 (295)
T ss_dssp EEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHT--CSEEEEEE
T ss_pred EEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEecC
Confidence 7655532 22222222 2456666778999999999874443 443 247888999999999998 67766651
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC--CcccccChhHHHHHHHcCCceEee---C---Cccc--cC
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS--AGRVRFSMPEQALCFLAGANSIFT---G---EKLL--TT 275 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~--~g~~~~~~~~~~~~~~~Gan~~~~---~---~~~~--~~ 275 (320)
.-| ..++.+..+++...+...|...+.+- .. .++.......++.+|++.+-. | ..|. .+
T Consensus 177 ---t~G-------~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~-~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~ 245 (295)
T 1ydn_A 177 ---TIG-------RGTPDTVAAMLDAVLAIAPAHSLAGHYHDT-GGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAK 245 (295)
T ss_dssp ---TTS-------CCCHHHHHHHHHHHHTTSCGGGEEEEEBCT-TSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSC
T ss_pred ---CCC-------CcCHHHHHHHHHHHHHhCCCCeEEEEECCC-cchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCc
Confidence 112 25688888888877766664222211 11 122222346788999998732 2 2232 24
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+....++++.+++..|+.+
T Consensus 246 GN~~~e~lv~~l~~~g~~~ 264 (295)
T 1ydn_A 246 GNVDTVAVVEMLHEMGFET 264 (295)
T ss_dssp CBCBHHHHHHHHHHTTCBC
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 5567899999999988765
|
| >4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-08 Score=87.57 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=94.6
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHH-HHHcCCC--EEEEecccCCCCCCchhHHH----H
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQK-AKEAGST--RFCMGAAWRDTIGRKTNFNQ----I 95 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~-~~~~g~~--~i~l~~g~~~~~ge~~~~~~----l 95 (320)
...++ ...||.+.|.||...........-....+.+++++.++. +.+.+-. .|.+++. . +|...+. .
T Consensus 108 ~Y~ln-~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~-T----Dpyp~E~~~~lt 181 (368)
T 4fhd_A 108 EYAIP-LATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACT-S----DIVGIDHLTHSL 181 (368)
T ss_dssp EEECC-SEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSS-B----CHHHHHTTTCHH
T ss_pred ceeeC-CccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcC-C----CcchhhHHHhHH
Confidence 34577 588999999999654332211111123678999998765 3333433 3433322 2 2333333 3
Q ss_pred HHHHHHhhhc-CceEEE-eCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeee
Q 020848 96 LEYVKDIRDM-GMEVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 96 ~~~i~~~k~~-~~~i~~-~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
.++++.+.+. +..+.+ |-+.+- +.+..|...|.-.|.+++.+ +++.+.+-++ .+.++++++++.+.++|+++++.
T Consensus 182 r~~le~l~~~~~~~v~i~TKs~li-d~L~~l~~~~~v~V~~Sitt-~~l~r~~EP~aps~~~RL~Ai~~l~~aGipv~v~ 259 (368)
T 4fhd_A 182 KKAIEFIGATDYGRLRFVTKYEHV-DHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFV 259 (368)
T ss_dssp HHHHHHHHHCSSEEEEEEESCCCC-GGGTTCCCTTCEEEEEEECC-HHHHHHHCTTSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCceEEEEeCCcCH-HHHHhcCcCCceEEEEEEcC-HHHHHHcCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 3444445443 333322 222221 23444444455566667655 5666777664 58999999999999999998877
Q ss_pred EEEEe-CCCH-HHHHHHHHHHhc
Q 020848 173 GIIGL-GEAE-EDRVGLLHTLAT 193 (320)
Q Consensus 173 ~i~Gl-get~-ed~~~~l~~l~~ 193 (320)
+---+ ++++ ++..++++.+.+
T Consensus 260 iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 260 VAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHH
T ss_pred EeCcCCCCCCHHHHHHHHHHHHH
Confidence 64434 5555 577777776554
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00011 Score=64.73 Aligned_cols=225 Identities=12% Similarity=0.040 Sum_probs=144.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+.++.++.+.+.|++.|-.+++..+. ..|. +.+..+.++.+.+ .+.++..-. .+.+.+++..++|++.|
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~-~~~~-~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v 100 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSFVSPK-WVPQ-MAGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEV 100 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEECSCTT-TCGG-GTTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCcCcc-cccc-ccCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEE
Confidence 34899999999999999999999887643221 1122 2344455555553 355543332 37889999999999999
Q ss_pred ccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+..-+.+ .....++.. .+++...+.++.+++.|+.+...+..-.+ -+++.+.+.++.+.+.| ++.+.+
T Consensus 101 ~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G--~d~i~l 178 (302)
T 2ftp_A 101 AVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMG--CYEVSL 178 (302)
T ss_dssp EEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTT--CSEEEE
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 88765543 233444332 25566777888899999988766544222 36788899999999998 666655
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eC--C-ccc--c
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TG--E-KLL--T 274 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~--~-~~~--~ 274 (320)
. +|- ....+.+..+++...+..+|+..+.+-+ .-.++.......++.+|+..+- .| + .|- .
T Consensus 179 ~------DT~----G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr 248 (302)
T 2ftp_A 179 G------DTI----GVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGA 248 (302)
T ss_dssp E------ESS----SCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTC
T ss_pred e------CCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCC
Confidence 4 221 1245778888888777666643222211 0012222334678899998872 22 1 121 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++....++++.+++..|+.+
T Consensus 249 ~GN~~~E~lv~~l~~~g~~~ 268 (302)
T 2ftp_A 249 TGNVASEDVLYLLNGLEIHT 268 (302)
T ss_dssp BCBCBHHHHHHHHHHTTCBC
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 45577899999999988765
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.7e-05 Score=65.18 Aligned_cols=225 Identities=9% Similarity=0.062 Sum_probs=144.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.++.++.++.+.+.|++.|-++++..+. ..|. +.+..+.++.+++ .+..+..-. ...+.++...++|++.|
T Consensus 23 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~-~~p~-~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~~g~~~v 98 (307)
T 1ydo_A 23 VWIATEDKITWINQLSRTGLSYIEITSFVHPK-WIPA-LRDAIDVAKGIDREKGVTYAALV--PNQRGLENALEGGINEA 98 (307)
T ss_dssp SCCCHHHHHHHHHHHHTTTCSEEEEEECSCTT-TCGG-GTTHHHHHHHSCCCTTCEEEEEC--CSHHHHHHHHHHTCSEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcc-cccc-cCCHHHHHHHhhhcCCCeEEEEe--CCHHhHHHHHhCCcCEE
Confidence 34899999999999999999999887643321 1121 2233345555543 244432211 25788999999999999
Q ss_pred ccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+...+.+ -....++.. ..++...+.++.+++.|+.+..++...++ -+.+.+.+.++.+.++| ++.+.+
T Consensus 99 ~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l 176 (307)
T 1ydo_A 99 CVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFG--ISELSL 176 (307)
T ss_dssp EEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHT--CSCEEE
T ss_pred EEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcC--CCEEEE
Confidence 98876553 233334322 13566678888899999998777665332 36788999999999998 665544
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCc---cc--c
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEK---LL--T 274 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~---~~--~ 274 (320)
. +|- ....+.++.+++...+..+|+..+.+-+ ...++.-.....++.+||..+- .|-+ |- .
T Consensus 177 ~------DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~gr 246 (307)
T 1ydo_A 177 G------DTI----GAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGS 246 (307)
T ss_dssp E------CSS----CCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEE
T ss_pred c------CCC----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCC
Confidence 2 331 2356888888888888777643332211 0012222234678899998872 2211 11 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++....++++.+++..|+.+
T Consensus 247 aGN~~~E~lv~~L~~~g~~t 266 (307)
T 1ydo_A 247 SGNAATEDIVYMLEQMDIKT 266 (307)
T ss_dssp ECBCBHHHHHHHHHHTTCBC
T ss_pred CCChhHHHHHHHHHhcCCCC
Confidence 45678899999999988865
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00017 Score=64.52 Aligned_cols=221 Identities=11% Similarity=0.051 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH---hhhc-CceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQ-KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD---IRDM-GMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~-~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~---~k~~-~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
.++.++.++.++ .+.+.|++.|-++++... |..++.+.++.+. +... +..+..- . ...+.++...++|+
T Consensus 37 ~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~i~~l-~-~~~~~i~~a~~~g~ 110 (337)
T 3ble_A 37 SFSTSEKLNIAKFLLQKLNVDRVEIASARVS----KGELETVQKIMEWAATEQLTERIEILGF-V-DGNKTVDWIKDSGA 110 (337)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEEETTSC----TTHHHHHHHHHHHHHHTTCGGGEEEEEE-S-STTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCCCC----hhHHHHHHHHHhhhhhhccCCCCeEEEE-c-cchhhHHHHHHCCC
Confidence 389999999999 999999999988764321 2233333333332 1111 2232211 1 11238999999999
Q ss_pred CeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEE---EeCCCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 130 TAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGII---GLGEAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 130 d~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~---Glget~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
+.|.+...+.+ .....++.. ..++...+.++.+++.|+++..++.. +...+.+.+.+.++.+.++| ++.+.+
T Consensus 111 ~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l 188 (337)
T 3ble_A 111 KVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEH--IERIFL 188 (337)
T ss_dssp CEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSC--CSEEEE
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 99998776663 334444432 24567777888889999998777654 33346788889999999998 555443
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCC
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNND 279 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~ 279 (320)
++|- ....+.+..+++...+..+|+..+.+-+ ...++--.....++.+||..+-. |-+ ..++..+
T Consensus 189 ------~DT~----G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG-~~aGN~~ 257 (337)
T 3ble_A 189 ------PDTL----GVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGLG-ERAGNTP 257 (337)
T ss_dssp ------ECTT----CCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCS-STTCBCB
T ss_pred ------ecCC----CCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEeccccc-ccccchh
Confidence 2331 2356888889888888878754333211 00122222346788999998732 211 1345677
Q ss_pred hhHHHHHHHHc-CCCc
Q 020848 280 FDADQLMFKVL-GLTP 294 (320)
Q Consensus 280 ~~~~~~~i~~~-G~~p 294 (320)
.++++.+++.. |+.+
T Consensus 258 ~E~lv~~L~~~~g~~t 273 (337)
T 3ble_A 258 LEALVTTIHDKSNSKT 273 (337)
T ss_dssp HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 88888888887 7654
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0012 Score=57.85 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=131.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCC-CHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML-EKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l-~~e~l~~L~~aGld~v 132 (320)
..++.++.++.++.+.+.|++.|-+++.. . .|..++.+..+.+..+...+...+.+..- -+..++.++++|++.|
T Consensus 22 ~~~~~~~K~~i~~~L~~~Gv~~IE~g~p~---~-~~~d~e~v~~i~~~~~~~~i~~l~~~~~~di~~a~~~~~~ag~~~v 97 (293)
T 3ewb_X 22 VNFDVKEKIQIALQLEKLGIDVIEAGFPI---S-SPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSPQI 97 (293)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSEEEEECGG---G-CHHHHHHHHHHHHHCCSSEEEEEEESSHHHHHHHHHHHTTCSSEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCC---C-CccHHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHhhcCCCEE
Confidence 44899999999999999999999876421 1 13333444333333222122223332110 1223344455799998
Q ss_pred ccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 133 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 133 ~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
.+.+-+.+ .....++.. ..++...+.++.+++.|..+..++..+..-+.+.+.+.++.+.++| ++.|.+
T Consensus 98 ~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l------ 169 (293)
T 3ewb_X 98 HIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAG--ATVINI------ 169 (293)
T ss_dssp EEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--CCEEEE------
T ss_pred EEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcC--CCEEEe------
Confidence 88776653 223333221 1345556667778888988776665444457788899999999998 555433
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCce-eecC--C-cccccChhHHHHHHHcCCceEee---CCccccCCCCChhH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAM-VRLS--A-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDFDA 282 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~-i~~~--~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~~~ 282 (320)
++|- ....+.++.+++...+..+|... +++. . ...++.-.....++.+||..+-. |-+ ..++....++
T Consensus 170 ~DT~----G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlG-eraGN~~~E~ 244 (293)
T 3ewb_X 170 PDTV----GYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGIG-ERAGNTALEE 244 (293)
T ss_dssp ECSS----SCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCC-TTTCBCBHHH
T ss_pred cCCC----CCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeeccccc-cccccHhHHH
Confidence 2332 23568888888888888887521 2221 0 00112122346788999998722 211 1345677888
Q ss_pred HHHHHHH----cCCCc
Q 020848 283 DQLMFKV----LGLTP 294 (320)
Q Consensus 283 ~~~~i~~----~G~~p 294 (320)
++.+++. .|+.+
T Consensus 245 vv~~L~~~~~~~g~~t 260 (293)
T 3ewb_X 245 VAVALHIRKDFYQAET 260 (293)
T ss_dssp HHHHHHHTHHHHCEEE
T ss_pred HHHHHHhhhhhcCCCC
Confidence 8888875 57654
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0022 Score=58.77 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=119.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++-++.++.+.+.|++.|-++. |..-+.-.+.++.+.+.+. .++. ......+.++...++|++.
T Consensus 56 ~~~s~eeKl~Ia~~L~~~Gv~~IEvG~--------P~asp~d~~~~~~i~~~~~~~~v~~-~~r~~~~di~~A~~aG~~~ 126 (423)
T 3ivs_A 56 AFFDTEKKIQIAKALDNFGVDYIELTS--------PVASEQSRQDCEAICKLGLKCKILT-HIRCHMDDARVAVETGVDG 126 (423)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC--------TTSCHHHHHHHHHHHTSCCSSEEEE-EEESCHHHHHHHHHTTCSE
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEee--------cccCHHHHHHHHHHHhcCCCCEEEE-eeccChhhHHHHHHcCCCE
Confidence 348999999999999999999998753 1222344455555554433 3322 1224577789999999999
Q ss_pred eccCccccHHHHh--hhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 132 YNHNLDTSREFYS--KIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 132 v~i~let~~~~~~--~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
|.+.+-+.+ .+. .++. ...++...+.++.+++.|+.+..++.-+...+.+.+.+.++.+.+.| ++.+.+
T Consensus 127 V~i~~s~Sd-~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~G--a~~i~l---- 199 (423)
T 3ivs_A 127 VDVVIGTSQ-YLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIG--VNRVGI---- 199 (423)
T ss_dssp EEEEEEC--------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHC--CSEEEE----
T ss_pred EEEEeeccH-HHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhC--CCcccc----
Confidence 998876653 222 2222 12356777889999999999887766655668888999999999998 554433
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++|- ....+.++.+++...+...+ ..+.+-+ ...++.-.....++.+||..+
T Consensus 200 --~DTv----G~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~aGa~~v 252 (423)
T 3ivs_A 200 --ADTV----GCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMAIANAYCALEAGATHI 252 (423)
T ss_dssp --EETT----SCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCHHHHHHHHHHTTCCEE
T ss_pred --CCcc----CcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchHHHHHHHHHHhCCCEE
Confidence 2332 23457777777776665543 2222110 001111223467889999987
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0027 Score=56.94 Aligned_cols=214 Identities=12% Similarity=0.106 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe----c-ccCCCCCCchhHHHHHHHHHHhhhc--CceE--EEeCCCCCHHHHHHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMG----A-AWRDTIGRKTNFNQILEYVKDIRDM--GMEV--CCTLGMLEKHQAIELK 125 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~----~-g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i--~~~~g~l~~e~l~~L~ 125 (320)
.++.++.++.++.+.+.|++.|-++ . +..+..| | ....-.+.++.+++. +.++ +..++.-.++.+++..
T Consensus 26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g-~-~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~ 103 (345)
T 1nvm_A 26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYG-F-GRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAY 103 (345)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTB-C-CSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCccc-C-CCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHH
Confidence 3899999999999999999999885 1 1111112 2 122344556665532 4443 3344555688999999
Q ss_pred HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 126 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 126 ~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
++|++.+.+.+... ..+...+.++.+++.|+.+...+.-...-+++.+.+.++.+.+.| ++.|++
T Consensus 104 ~aGvd~v~I~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~G--a~~i~l-- 168 (345)
T 1nvm_A 104 QAGARVVRVATHCT-----------EADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYM-- 168 (345)
T ss_dssp HHTCCEEEEEEETT-----------CGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEE--
T ss_pred hCCcCEEEEEEecc-----------HHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCC--CCEEEE--
Confidence 99999988753211 123456778889999998777765545667888999999999998 554433
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCCh
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDF 280 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~ 280 (320)
++|- ....+.++.+++...|..+| +..+.+-+ ...++.-.....++.+||+.+- .|-+ ..++..+.
T Consensus 169 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG-~~aGN~~l 239 (345)
T 1nvm_A 169 ----ADSG----GAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMG-AGAGNAPL 239 (345)
T ss_dssp ----ECTT----CCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBH
T ss_pred ----CCCc----CccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhcc-CCccCcCH
Confidence 2432 12347888888888888886 43332211 0012222234678899998772 2211 13566789
Q ss_pred hHHHHHHHHcCCCc
Q 020848 281 DADQLMFKVLGLTP 294 (320)
Q Consensus 281 ~~~~~~i~~~G~~p 294 (320)
++++.+++..|+.+
T Consensus 240 e~lv~~L~~~g~~~ 253 (345)
T 1nvm_A 240 EVFIAVAERLGWNH 253 (345)
T ss_dssp HHHHHHHHHHTCBC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999988764
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0033 Score=55.79 Aligned_cols=221 Identities=12% Similarity=0.118 Sum_probs=134.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHh----cc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA----GL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~a----Gl 129 (320)
..++.++-++.++.+.+.|++.|-++. +... |..++.+.++.+.++ +..+..- .....+.++.-.++ |+
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~-~~d~e~v~~i~~~~~--~~~i~~l-~r~~~~~i~~a~~al~~ag~ 95 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSS-PGDFNSVVEITKAVT--RPTICAL-TRAKEADINIAGEALRFAKR 95 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSC-HHHHHHHHHHHHHCC--SSEEEEE-CCSCHHHHHHHHHHHTTCSS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-HhHHHHHHHHHHhCC--CCEEEEe-ecCCHHHHHHHHHhhcccCC
Confidence 348899999999999999999988763 2112 333444433333222 3343211 12234455544444 99
Q ss_pred CeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 130 TAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 130 d~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
+.|.+..-+.+ .....++. ...++...+.++.+++.|+.+..++..+..-+.+.+.+.++.+.+.| ++.|.+
T Consensus 96 ~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G--~~~i~l--- 170 (325)
T 3eeg_A 96 SRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAG--ADVVNI--- 170 (325)
T ss_dssp EEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHT--CSEEEC---
T ss_pred CEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcC--CCEEEe---
Confidence 99988766663 23333333 34677788899999999998877766655567888899999999998 554433
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCC
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNND 279 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~ 279 (320)
++|- ....+.++.+++...+..+|+ ..+.+-+ ...++.-.....++.+||..+-. |-+ ..++...
T Consensus 171 ---~DT~----G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~tv~GlG-er~GN~~ 242 (325)
T 3eeg_A 171 ---PDTT----GYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIG-ERAGNTA 242 (325)
T ss_dssp ---CBSS----SCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCC-STTCCCB
T ss_pred ---cCcc----CCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccchh
Confidence 3432 235678888888888888875 3332211 00111122345688999988722 211 1345677
Q ss_pred hhHHHHHHHH----cCCCc
Q 020848 280 FDADQLMFKV----LGLTP 294 (320)
Q Consensus 280 ~~~~~~~i~~----~G~~p 294 (320)
.++++.+++. +|+.+
T Consensus 243 lE~vv~~L~~~~~~~g~~t 261 (325)
T 3eeg_A 243 LEEVVMAMECHKETLGLET 261 (325)
T ss_dssp HHHHHHHHHHTHHHHCEEC
T ss_pred HHHHHHHHHhhhhccCCCC
Confidence 8888888874 56654
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0085 Score=54.06 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHH----HHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAI----ELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~----~L~~aGld 130 (320)
.++.++-++.++.+.+.|++.|-.+.. ... |..++.+..+.+.++...+...... ..+.++ .|+.+|++
T Consensus 30 ~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~-~~d~e~v~~i~~~~~~~~i~~l~r~---~~~di~~a~~al~~ag~~ 102 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKLGVDIIEAGFA---AAS-PGDFEAVNAIAKTITKSTVCSLSRA---IERDIRQAGEAVAPAPKK 102 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEEG---GGC-HHHHHHHHHHHTTCSSSEEEEEEES---SHHHHHHHHHHHTTSSSE
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCC---CCC-HHHHHHHHHHHHhCCCCeEEEEecC---CHHHHHHHHHHHhhCCCC
Confidence 489999999999999999998877541 111 3334444333332222112222221 344444 44558999
Q ss_pred eeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 131 AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 131 ~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.|.+..-+.+ ....+++.. ...+...+.++.+++.|..+..+...+..-+.+.+.+.++.+.+.| ++.|.+
T Consensus 103 ~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~G--a~~i~l---- 176 (370)
T 3rmj_A 103 RIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAG--ATTINI---- 176 (370)
T ss_dssp EEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHT--CCEEEE----
T ss_pred EEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcC--CCEEEe----
Confidence 9998877763 333344322 1344555567778888888766666555567888899999999998 554433
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCCh
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDF 280 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~ 280 (320)
++|- ....|.++.+++...+..+|. ..+.+-+ ...++--.....++.+||..+- .|-+ ..++....
T Consensus 177 --~DT~----G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlG-eraGN~~l 249 (370)
T 3rmj_A 177 --PDTV----GYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLG-ERAGNASV 249 (370)
T ss_dssp --ECSS----SCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBH
T ss_pred --cCcc----CCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccC-cccccccH
Confidence 2432 235688888888888877875 3232211 0011112234678899999872 2211 13455677
Q ss_pred hHHHHHHHH----cCCCc
Q 020848 281 DADQLMFKV----LGLTP 294 (320)
Q Consensus 281 ~~~~~~i~~----~G~~p 294 (320)
++++.+++. .|+.+
T Consensus 250 E~vv~~L~~~~~~~g~~t 267 (370)
T 3rmj_A 250 EEIVMALKVRHDLFGLET 267 (370)
T ss_dssp HHHHHHHHHTHHHHCCBC
T ss_pred HHHHHHHHhhhhccCCCC
Confidence 777777753 46654
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.024 Score=52.60 Aligned_cols=215 Identities=11% Similarity=0.086 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCC-----CCCCchhHHHHHHHHHHhhhcCceEEEe--C--CCC------CHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT--L--GML------EKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~-----~~ge~~~~~~l~~~i~~~k~~~~~i~~~--~--g~l------~~e 119 (320)
.++.++.++.++.+.+.|+..|-.+++... ... +..++.+..+.+.++...+.+.+. | |.. .+.
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~-~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~ 104 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG-EDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDT 104 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC-CCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC-CCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHH
Confidence 378899999999999999999988764210 011 122332222222222223333332 1 321 256
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--EEEeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|++.+.+...+. +.+...+.++.+++.|..+..++ ..|...+.+.+.+.++.+.+.|
T Consensus 105 ~v~~a~~~Gvd~i~if~~~s-----------d~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-- 171 (464)
T 2nx9_A 105 FVERAVKNGMDVFRVFDAMN-----------DVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG-- 171 (464)
T ss_dssp HHHHHHHTTCCEEEECCTTC-----------CTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCcCEEEEEEecC-----------HHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC--
Confidence 68889999999988764332 23456788999999999876555 4455568899999999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC-Ccc-cc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG-EKL-LT 274 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~-~~~-~~ 274 (320)
++.|.+ ++|. ....+.++.+++...+..++ ..+.+-+ ...++.-.....++.+||+.+-.. .++ ..
T Consensus 172 ad~I~l------~DT~----G~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~ger 240 (464)
T 2nx9_A 172 VDSIAL------KDMA----GILTPYAAEELVSTLKKQVD-VELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGT 240 (464)
T ss_dssp CSEEEE------EETT----SCCCHHHHHHHHHHHHHHCC-SCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCST
T ss_pred CCEEEE------cCCC----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCC
Confidence 655444 2221 23457888888887776553 2222110 001111223467889999987221 011 12
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++..+.++++.+++..|+.+
T Consensus 241 tGN~~lE~lv~~L~~~g~~t 260 (464)
T 2nx9_A 241 YGHPATESLVATLQGTGYDT 260 (464)
T ss_dssp TSCCBHHHHHHHHTTSTTCC
T ss_pred CcCHHHHHHHHHHHhcCCCc
Confidence 56678899999999888764
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.017 Score=52.33 Aligned_cols=208 Identities=14% Similarity=0.153 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++.++.++.++.+.+.|++.|-+++ |...+...+.++.+++.+. .+..-+ .-..+.++...++|++.+
T Consensus 21 ~~~~~~k~~ia~~L~~~Gv~~IE~g~--------p~~~~~~~~~~~~i~~~~~~~~v~~~~-r~~~~di~~a~~~g~~~v 91 (382)
T 2ztj_A 21 NFSTQDKVEIAKALDEFGIEYIEVTT--------PVASPQSRKDAEVLASLGLKAKVVTHI-QCRLDAAKVAVETGVQGI 91 (382)
T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEECC--------TTSCHHHHHHHHHHHTSCCSSEEEEEE-ESCHHHHHHHHHTTCSEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEEEEcC--------CcCCHHHHHHHHHHHhcCCCcEEEEEc-ccChhhHHHHHHcCCCEE
Confidence 48999999999999999999998754 2233445566777765443 333221 124677899999999998
Q ss_pred ccCccccHHHHhhhCCCCC----HHHHHHHHHHHHHcC--CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 133 NHNLDTSREFYSKIITTRS----YDERLETLKHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~----~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
.+.+-+.+ .+.. .-+.+ ++...+.++.+++.| +.+..++.-+...+.+.+.+.++.+.+. . +.+.+
T Consensus 92 ~i~~~~s~-~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a--~~i~l--- 163 (382)
T 2ztj_A 92 DLLFGTSK-YLRA-PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-V--DRVGL--- 163 (382)
T ss_dssp EEEECC----------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-C--SEEEE---
T ss_pred EEEeccCH-HHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-c--CEEEe---
Confidence 88765543 3333 22344 455678888899999 8777666554456778888888888776 3 33332
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCChh
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDFD 281 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~-p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~~ 281 (320)
++|- ....|.++.+++...+..+ ++..+.+-+ ...++--.....++.+||+.+- .|-+ ..++..+.+
T Consensus 164 ---~DT~----G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlG-eraGN~~lE 235 (382)
T 2ztj_A 164 ---ADTV----GVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIG-ERNGITPLG 235 (382)
T ss_dssp ---EETT----SCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBHH
T ss_pred ---cCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEcccccc-ccccchhHH
Confidence 2332 2345777788877776653 443332211 0011212234678899999872 2211 123445555
Q ss_pred HHHHHH
Q 020848 282 ADQLMF 287 (320)
Q Consensus 282 ~~~~~i 287 (320)
+++..+
T Consensus 236 ~vv~~L 241 (382)
T 2ztj_A 236 GFLARM 241 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555333
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0064 Score=57.39 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=133.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCC-----CCCCchhHHHHHHHHHHhhhcCceEEEe--C--CC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD-----TIGRKTNFNQILEYVKDIRDMGMEVCCT--L--GM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~-----~~ge~~~~~~l~~~i~~~k~~~~~i~~~--~--g~------l~~e 119 (320)
.++.++.++.++.+.+.|++.|-++++... ..+ +..++.+..+.+.++...+.+++. | |. +.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~-~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~ 121 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDR 121 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSC-CCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccC-CCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHH
Confidence 388999999999999999999988764210 011 122333333222223323333332 1 32 1366
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--EEEeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++.+.++|++.+.+...+. +.+...+.++.+++.|..+...+ ..|...+.+.+.+.++.+.+.|
T Consensus 122 ~ve~a~~aGvd~vrIf~s~s-----------d~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-- 188 (539)
T 1rqb_A 122 FVDKSAENGMDVFRVFDAMN-----------DPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG-- 188 (539)
T ss_dssp HHHHHHHTTCCEEEECCTTC-----------CTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCCEEEEEEehh-----------HHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcC--
Confidence 78999999999988764332 22556788999999999875444 4455568899999999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CceeecCC-cccccChhHHHHHHHcCCceEee---CCcc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKL 272 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~ 272 (320)
++.|.+ ++|- ....+.++.+++...+..+| +..+.+-+ ...++.-.....++.+||+.+-. |-+
T Consensus 189 ad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g~G- 257 (539)
T 1rqb_A 189 ADSIAL------KDMA----ALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMS- 257 (539)
T ss_dssp CSEEEE------EETT----CCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGC-
T ss_pred CCEEEe------CCCC----CCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccC-
Confidence 654443 2221 23457888888888777676 43332211 00111122346788999998722 211
Q ss_pred ccCCCCChhHHHHHHHHcCCCc
Q 020848 273 LTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 273 ~~~~~~~~~~~~~~i~~~G~~p 294 (320)
..++..+.++++.+++..|+.+
T Consensus 258 ertGN~~lE~lv~~L~~~g~~t 279 (539)
T 1rqb_A 258 LGPGHNPTESVAEMLEGTGYTT 279 (539)
T ss_dssp STTSBCBHHHHHHHTTTSSEEC
T ss_pred CCccChhHHHHHHHHHhcCCCc
Confidence 1255677888888888877654
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.096 Score=45.04 Aligned_cols=195 Identities=17% Similarity=0.212 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
...+.++.+.+.|+..+.+.+ ++.++..-.+.++.++ ..++++......+++.++.+.+.+|.|.|.+....
T Consensus 73 ~p~~~A~~y~~~GA~~isvlt-------d~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVT-------EQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEEC-------CGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGG
T ss_pred CHHHHHHHHHHcCCCEEEEec-------ChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEeccc
Confidence 344556667778999998764 2446666566777776 45778766666788888999999999999986544
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
. +.++..+.++.+++.|+.+ ++.. .+.+++...+ ++| ++.++++. ...+.+
T Consensus 146 l-----------~~~~l~~l~~~a~~lGl~~----lvev-~t~ee~~~A~----~~G--ad~IGv~~---r~l~~~---- 196 (272)
T 3qja_A 146 L-----------EQSVLVSMLDRTESLGMTA----LVEV-HTEQEADRAL----KAG--AKVIGVNA---RDLMTL---- 196 (272)
T ss_dssp S-----------CHHHHHHHHHHHHHTTCEE----EEEE-SSHHHHHHHH----HHT--CSEEEEES---BCTTTC----
T ss_pred C-----------CHHHHHHHHHHHHHCCCcE----EEEc-CCHHHHHHHH----HCC--CCEEEECC---Cccccc----
Confidence 3 1233345567777888775 2222 3666654433 456 67787763 221222
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCC
Q 020848 219 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAP 297 (320)
Q Consensus 219 ~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~ 297 (320)
.++.+...++ +...|.....++. .++. ++.-.....+|++.+.+|+.+.... ++.+..+-+.++|-.|.-|
T Consensus 197 ~~dl~~~~~l----~~~v~~~~pvVae--gGI~t~edv~~l~~~GadgvlVGsal~~a~--dp~~~~~~l~~~~~~~~~~ 268 (272)
T 3qja_A 197 DVDRDCFARI----APGLPSSVIRIAE--SGVRGTADLLAYAGAGADAVLVGEGLVTSG--DPRAAVADLVTAGTHPSCP 268 (272)
T ss_dssp CBCTTHHHHH----GGGSCTTSEEEEE--SCCCSHHHHHHHHHTTCSEEEECHHHHTCS--CHHHHHHHHHTTTTCSCCC
T ss_pred ccCHHHHHHH----HHhCcccCEEEEE--CCCCCHHHHHHHHHcCCCEEEEcHHHhCCC--CHHHHHHHHHhhhcCCcCC
Confidence 1222322222 2234432222222 1233 3333556778999999998666443 6888888888888777655
Q ss_pred C
Q 020848 298 S 298 (320)
Q Consensus 298 ~ 298 (320)
+
T Consensus 269 ~ 269 (272)
T 3qja_A 269 K 269 (272)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.029 Score=47.30 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~le 137 (320)
++..+.++.+.+.|++.+.+...... + .......+.++.++ ..++++..+.+..+.+.++.+.++|+|.|.++-.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~--~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAA--P--EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCC--T--TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCcc--c--cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChH
Confidence 45666777778899998888642111 1 12334566677777 4578888888888999999999999999998743
Q ss_pred ccHHHHhhhCCCCCHHHHHHHHHHHHHcCC---eeeeeE-------EEEe-CC---CHHHHHHHHHHHhcCCCCCCeeee
Q 020848 138 TSREFYSKIITTRSYDERLETLKHVREAGI---NVCSGG-------IIGL-GE---AEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 138 t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi---~v~~~~-------i~Gl-ge---t~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.. . +.+...+.. +..|. .+.+++ .+-. +. +..+..+.++.+.+.| ++.+.+
T Consensus 109 ~~----~------~~~~~~~~~---~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G--~d~i~~ 173 (253)
T 1h5y_A 109 AV----R------NPQLVALLA---REFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILL 173 (253)
T ss_dssp HH----H------CTHHHHHHH---HHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEE
T ss_pred Hh----h------CcHHHHHHH---HHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCC--CCEEEE
Confidence 22 1 111112222 22332 222222 2212 21 1123445556667777 677777
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHH
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDAD 283 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~ 283 (320)
+...+ .|+. ..++.+. ++. .+... +..+-..+|-.. .+.-...+.+||+.++.|..+ .....+.++.
T Consensus 174 ~~~~~-~g~~----~~~~~~~-i~~---l~~~~-~~pvia~GGi~~--~~~~~~~~~~Ga~~v~vgsal-~~~~~~~~~~ 240 (253)
T 1h5y_A 174 TSIDR-DGTG----LGYDVEL-IRR---VADSV-RIPVIASGGAGR--VEHFYEAAAAGADAVLAASLF-HFRVLSIAQV 240 (253)
T ss_dssp EETTT-TTTC----SCCCHHH-HHH---HHHHC-SSCEEEESCCCS--HHHHHHHHHTTCSEEEESHHH-HTTSSCHHHH
T ss_pred ecccC-CCCc----CcCCHHH-HHH---HHHhc-CCCEEEeCCCCC--HHHHHHHHHcCCcHHHHHHHH-HcCCCCHHHH
Confidence 65433 1332 1123332 222 22223 222222332211 122244567899999999744 3444578999
Q ss_pred HHHHHHcCCCcC
Q 020848 284 QLMFKVLGLTPK 295 (320)
Q Consensus 284 ~~~i~~~G~~p~ 295 (320)
.+.+++.||.+.
T Consensus 241 ~~~l~~~g~~~~ 252 (253)
T 1h5y_A 241 KRYLKERGVEVR 252 (253)
T ss_dssp HHHHHHTTCBCC
T ss_pred HHHHHHcCCCCC
Confidence 999999999753
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.021 Score=48.36 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccC---CCCCCchhHHHHHHHHHHhh-hcCceE--EEeCCCCCHHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWR---DTIGRKTNFNQILEYVKDIR-DMGMEV--CCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~---~~~ge~~~~~~l~~~i~~~k-~~~~~i--~~~~g~l~~e~l~~L~~a 127 (320)
.+...+.++++.+.+.|++-+.+ ..|.. .+.| ..+++.++... +..+.+ .+++ ..+.++.+.++
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-----~~~v~~lr~~~p~~~ldvHLmv~~---p~~~i~~~~~a 108 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-----PMVLKALRDYGITAGMDVHLMVKP---VDALIESFAKA 108 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-----HHHHHHHHHHTCCSCEEEEEECSS---CHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-----HHHHHHHHHhCCCCeEEEEEeeCC---HHHHHHHHHHc
Confidence 34556677777777788886555 33322 1223 34555555543 332333 2222 25689999999
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
|.|.+.+..|+.+ .. .+.++.+++.|+++++. +..+...+.+...+ .. ++.|-++.-.
T Consensus 109 GAd~itvH~Ea~~----------~~---~~~i~~ir~~G~k~Gva--lnp~Tp~e~l~~~l---~~----vD~VlvMsV~ 166 (246)
T 3inp_A 109 GATSIVFHPEASE----------HI---DRSLQLIKSFGIQAGLA--LNPATGIDCLKYVE---SN----IDRVLIMSVN 166 (246)
T ss_dssp TCSEEEECGGGCS----------CH---HHHHHHHHTTTSEEEEE--ECTTCCSGGGTTTG---GG----CSEEEEECSC
T ss_pred CCCEEEEccccch----------hH---HHHHHHHHHcCCeEEEE--ecCCCCHHHHHHHH---hc----CCEEEEeeec
Confidence 9999999887641 22 46667778889876554 32222322222222 11 4566555443
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
||..-+...+.+.+.+.++.+.....-.+..+.+.+| +.++.......+|||.++.|..+... .++.+.++.+
T Consensus 167 --PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGG---I~~~ti~~~~~aGAD~~V~GSaIf~a--~dp~~~i~~l 239 (246)
T 3inp_A 167 --PGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGG---VNPYNIAEIAVCGVNAFVAGSAIFNS--DSYKQTIDKM 239 (246)
T ss_dssp --TTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESS---CCTTTHHHHHTTTCCEEEESHHHHTS--SCHHHHHHHH
T ss_pred --CCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECC---cCHHHHHHHHHcCCCEEEEehHHhCC--CCHHHHHHHH
Confidence 3542222222223332222222221223344555543 33344467789999999999633322 3555655555
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 240 ~~ 241 (246)
T 3inp_A 240 RD 241 (246)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.048 Score=53.33 Aligned_cols=215 Identities=11% Similarity=0.027 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecccC-----CCCCCchhHHHHHHHHHHhhhcCceEEEeC----CC--C----CH
Q 020848 56 MTKDAVMQAAQKAKEA--GSTRFCMGAAWR-----DTIGRKTNFNQILEYVKDIRDMGMEVCCTL----GM--L----EK 118 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~--g~~~i~l~~g~~-----~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~----g~--l----~~ 118 (320)
++.++.++.++.+.+. |+..|-.+||.. +..++ ..++.+.++.+.+++..+..+... |. + ..
T Consensus 122 ~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e-~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~ 200 (718)
T 3bg3_A 122 VRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYE-CPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVF 200 (718)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCC-CHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCC-CHHHHHHHHHHHcccchHHHHhcccccccccccCCcchH
Confidence 8899999999999887 576787764432 12222 344555555555554334333321 21 1 35
Q ss_pred HHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE---e-----CCCHHHHHHHHHH
Q 020848 119 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG---L-----GEAEEDRVGLLHT 190 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G---l-----get~ed~~~~l~~ 190 (320)
+.++...++|++.+.+..-. .+.+.....++.+++.|..+...+.+. . ..+.+.+.+.++.
T Consensus 201 ~~i~~a~~~Gvd~irIf~s~-----------n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~ 269 (718)
T 3bg3_A 201 KFCEVAKENGMDVFRVFDSL-----------NYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEE 269 (718)
T ss_dssp HHHHHHHHHTCCEEEEECSS-----------CCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCEEEEEecH-----------HHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHH
Confidence 77889999999998775311 245677888999999998777666554 1 1267888999999
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc-ccccChhHHHHHHHcCCceEeeC
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG-RVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g-~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
+.+.| ++.|.+ ++|. ....+.++.+++...+..+|+..+.+-+- ..++.-.....++.+||+.+-..
T Consensus 270 l~~~G--a~~I~l------~DT~----G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~t 337 (718)
T 3bg3_A 270 LVRAG--THILCI------KDMA----GLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVA 337 (718)
T ss_dssp HHHHT--CSEEEE------ECTT----SCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCEEEE------cCcC----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEec
Confidence 99998 554443 2332 23568888899988888887544433110 01222223467889999987221
Q ss_pred -Ccc-ccCCCCChhHHHHHHHHcCCCc
Q 020848 270 -EKL-LTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 270 -~~~-~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++ ..++..+.++++.+++..|+.+
T Consensus 338 i~GlGertGN~~lE~vv~~L~~~g~~t 364 (718)
T 3bg3_A 338 ADSMSGMTSQPSMGALVACTRGTPLDT 364 (718)
T ss_dssp CGGGCSTTSCCBHHHHHHHHTTSTTCC
T ss_pred CcccccccCchhHHHHHHHHHhcCCCc
Confidence 001 1356678899999998887764
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.29 Score=41.26 Aligned_cols=205 Identities=13% Similarity=0.082 Sum_probs=110.1
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
..+.++.+.+.|++.+.+...... + .......+.++.++ ..++++....|..+.+.++.+.++|+|.|.++-...
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~~~~--~--~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l 107 (253)
T 1thf_D 32 PVELGKFYSEIGIDELVFLDITAS--V--EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAV 107 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCS--S--SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCchh--h--cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHH
Confidence 344456667789999888642211 1 13345567777777 457888888888899999999999999998875433
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-------EEE-eCCCH---HHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGG-------IIG-LGEAE---EDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-------i~G-lget~---ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
.. ++...+.++.+....+.+.++. .+- .+... .+..+.++.+.++| ++.+.+....+
T Consensus 108 ----~~------p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~ 175 (253)
T 1thf_D 108 ----EN------PSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTSIDR 175 (253)
T ss_dssp ----HC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEETTT
T ss_pred ----hC------hHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCC--CCEEEEEeccC
Confidence 11 1222233333221011122222 111 23211 12455556666676 55554433221
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
.|+. ..++.+.+.+ .+... +..+-..+| +. .+.-...+.+||+.++.|..+.. ...++++..+.+
T Consensus 176 -~g~~----~g~~~~~~~~----l~~~~-~ipvia~GG---I~~~~d~~~~~~~Gadgv~vGsal~~-~~~~~~~~~~~l 241 (253)
T 1thf_D 176 -DGTK----SGYDTEMIRF----VRPLT-TLPIIASGG---AGKMEHFLEAFLAGADAALAASVFHF-REIDVRELKEYL 241 (253)
T ss_dssp -TTSC----SCCCHHHHHH----HGGGC-CSCEEEESC---CCSHHHHHHHHHTTCSEEEESHHHHT-TCSCHHHHHHHH
T ss_pred -CCCC----CCCCHHHHHH----HHHhc-CCCEEEECC---CCCHHHHHHHHHcCChHHHHHHHHHc-CCCCHHHHHHHH
Confidence 1221 1233332222 22222 212222222 22 13234456789999999975442 333799999999
Q ss_pred HHcCCCcC
Q 020848 288 KVLGLTPK 295 (320)
Q Consensus 288 ~~~G~~p~ 295 (320)
++.|+.+.
T Consensus 242 ~~~g~~~~ 249 (253)
T 1thf_D 242 KKHGVNVR 249 (253)
T ss_dssp HHTTCCCC
T ss_pred HHcCCccc
Confidence 99998654
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.066 Score=44.80 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccC---CCCCCchhHHHHHHHHHHh--hhcCce--EEEeCCCCCHHHHHHHHHh
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWR---DTIGRKTNFNQILEYVKDI--RDMGME--VCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~---~~~ge~~~~~~l~~~i~~~--k~~~~~--i~~~~g~l~~e~l~~L~~a 127 (320)
++..+.++++.+.+.|++.+++ ..|.. .+.| ..+++.++.. .+..+. +.+++- .+.++.+.++
T Consensus 15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-----~~~v~~ir~~~~~~~~~dvhLmv~~p---~~~i~~~~~a 86 (228)
T 3ovp_A 15 DLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-----HPVVESLRKQLGQDPFFDMHMMVSKP---EQWVKPMAVA 86 (228)
T ss_dssp CGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-----HHHHHHHHHHHCSSSCEEEEEECSCG---GGGHHHHHHH
T ss_pred CchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-----HHHHHHHHHhhCCCCcEEEEEEeCCH---HHHHHHHHHc
Confidence 4455666777777788886655 33321 1223 3455555554 222222 333221 3578889999
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
|.|.+.+..|+. ... .+.++.+++.|+++++.+- .+...+.+...+ +. ++.|-+....
T Consensus 87 Gad~itvH~Ea~----------~~~---~~~i~~i~~~G~k~gval~--p~t~~e~l~~~l----~~---~D~Vl~msv~ 144 (228)
T 3ovp_A 87 GANQYTFHLEAT----------ENP---GALIKDIRENGMKVGLAIK--PGTSVEYLAPWA----NQ---IDMALVMTVE 144 (228)
T ss_dssp TCSEEEEEGGGC----------SCH---HHHHHHHHHTTCEEEEEEC--TTSCGGGTGGGG----GG---CSEEEEESSC
T ss_pred CCCEEEEccCCc----------hhH---HHHHHHHHHcCCCEEEEEc--CCCCHHHHHHHh----cc---CCeEEEeeec
Confidence 999999987663 122 4666777888987654422 232322222222 22 4556554443
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
||..-+...+.. +..+...|...++..+.+.+| +.++....+..+||+.++.|..+... .++.+.++.+
T Consensus 145 --pGf~Gq~f~~~~----l~ki~~lr~~~~~~~I~VdGG---I~~~t~~~~~~aGAd~~VvGsaIf~a--~dp~~~~~~l 213 (228)
T 3ovp_A 145 --PGFGGQKFMEDM----MPKVHWLRTQFPSLDIEVDGG---VGPDTVHKCAEAGANMIVSGSAIMRS--EDPRSVINLL 213 (228)
T ss_dssp --TTTCSCCCCGGG----HHHHHHHHHHCTTCEEEEESS---CSTTTHHHHHHHTCCEEEESHHHHTC--SCHHHHHHHH
T ss_pred --CCCCCcccCHHH----HHHHHHHHHhcCCCCEEEeCC---cCHHHHHHHHHcCCCEEEEeHHHhCC--CCHHHHHHHH
Confidence 354222111112 333444555666655666544 33344466788999999999643322 3455555554
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 214 ~~ 215 (228)
T 3ovp_A 214 RN 215 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.14 Score=42.82 Aligned_cols=196 Identities=12% Similarity=0.091 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCce--EEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
+.-.+.++++.+ +.|++.+.+ -.|...+. -..-..+++.++...+..+. +.+.+ ..+.++.+.++|.|.+
T Consensus 11 D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn--~t~G~~~v~~lr~~~~~~~dvhLmv~d---p~~~i~~~~~aGAd~i 84 (231)
T 3ctl_A 11 DLLKFKEQIEFI-DSHADYFHIDIMDGHFVPN--LTLSPFFVSQVKKLATKPLDCHLMVTR---PQDYIAQLARAGADFI 84 (231)
T ss_dssp CGGGHHHHHHHH-HTTCSCEEEEEECSSSSSC--CCBCHHHHHHHHTTCCSCEEEEEESSC---GGGTHHHHHHHTCSEE
T ss_pred ChhhHHHHHHHH-HcCCCEEEEEEEeCccCcc--chhcHHHHHHHHhccCCcEEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 344555666666 788876544 33321111 01112344433332212222 23322 2446899999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+. . .+. .+.++.+++.|+++++.+ ..+...+.+...+ + + ++.|-++...| |+
T Consensus 85 tvh~Ea~-------~--~~~---~~~i~~i~~~G~k~gv~l--np~tp~~~~~~~l----~-~--~D~VlvmsV~p--Gf 141 (231)
T 3ctl_A 85 TLHPETI-------N--GQA---FRLIDEIRRHDMKVGLIL--NPETPVEAMKYYI----H-K--ADKITVMTVDP--GF 141 (231)
T ss_dssp EECGGGC-------T--TTH---HHHHHHHHHTTCEEEEEE--CTTCCGGGGTTTG----G-G--CSEEEEESSCT--TC
T ss_pred EECcccC-------C--ccH---HHHHHHHHHcCCeEEEEE--ECCCcHHHHHHHH----h-c--CCEEEEeeecc--Cc
Confidence 9987662 0 112 466788888998876544 2232222222222 1 1 56676666655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CceeecCCcccccChhHHHHHHHcCCceEeeC-CccccCCCCChhHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTG-EKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p----~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~-~~~~~~~~~~~~~~~~~i 287 (320)
.-+...+ +. +..+...|.+.+ +..+.+.+| +.++.......+||+.++.| ..+...... +.+.++.+
T Consensus 142 ggQ~f~~-~~---l~kI~~lr~~~~~~~~~~~I~VdGG---I~~~~~~~~~~aGAd~~V~G~saif~~~d~-~~~~~~~l 213 (231)
T 3ctl_A 142 AGQPFIP-EM---LDKLAELKAWREREGLEYEIEVDGS---CNQATYEKLMAAGADVFIVGTSGLFNHAEN-IDEAWRIM 213 (231)
T ss_dssp SSCCCCT-TH---HHHHHHHHHHHHHHTCCCEEEEESC---CSTTTHHHHHHHTCCEEEECTTTTGGGCSS-HHHHHHHH
T ss_pred CCccccH-HH---HHHHHHHHHHHhccCCCceEEEECC---cCHHHHHHHHHcCCCEEEEccHHHhCCCCc-HHHHHHHH
Confidence 3112222 22 222333333332 334444433 33344466788999999999 744432221 55555555
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 214 ~~ 215 (231)
T 3ctl_A 214 TA 215 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.056 Score=48.60 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-chhHHHHHHHHHHhhhcCceEE--EeCCCCC-----HHHHHHHHHhc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVC--CTLGMLE-----KHQAIELKKAG 128 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-~~~~~~l~~~i~~~k~~~~~i~--~~~g~l~-----~e~l~~L~~aG 128 (320)
+.++..+.++.+.+.|+++|+-+- ..+.+. ....+.+-++++.+++.|+++. +++..+. .+.++.|++.|
T Consensus 39 ~~~~~~~Yi~~a~~~Gf~~IFTSL--~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lG 116 (385)
T 1x7f_A 39 TKEKDMAYISAAARHGFSRIFTCL--LSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELG 116 (385)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEE--CCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEccC--CccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 567888889999999998886432 222222 2456888899999999999854 5665543 36788999999
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
++.+.++
T Consensus 117 i~gLRLD 123 (385)
T 1x7f_A 117 ADGIRLD 123 (385)
T ss_dssp CSEEEES
T ss_pred CCEEEEc
Confidence 9988875
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.55 Score=39.48 Aligned_cols=206 Identities=13% Similarity=0.075 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+.+..... .+ .......+.++.++ ..++++....|..+.+.++.+.++|+|.+.++-..
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~--~~--~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~ 107 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISA--TH--EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA 107 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCS--ST--TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCc--cc--cCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 344555666778999888864221 11 12344567777777 45788888888899999999999999999887533
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-------EEE-eCCCH---HHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG-------IIG-LGEAE---EDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-------i~G-lget~---ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
. .. .+...+..+......+.+.+++ .+- .+... .+..+.++.+.++| +..+.+....
T Consensus 108 l----~~------p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~ 175 (252)
T 1ka9_F 108 V----RR------PELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSMD 175 (252)
T ss_dssp H----HC------THHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEETT
T ss_pred H----hC------cHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcC--CCEEEEeccc
Confidence 2 11 1112222222211112233332 121 22211 12344455555666 4444333211
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCCCChhHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
..|+. ..++.+. ++..+...+-+.+ ..+ ++. ++.-...+..|++.++.|..+. ....++.+..+.
T Consensus 176 -~~g~~----~g~~~~~----i~~l~~~~~ipvi-a~G---GI~~~~d~~~~~~~Gadgv~vgsal~-~~~~~~~~~~~~ 241 (252)
T 1ka9_F 176 -RDGTK----EGYDLRL----TRMVAEAVGVPVI-ASG---GAGRMEHFLEAFQAGAEAALAASVFH-FGEIPIPKLKRY 241 (252)
T ss_dssp -TTTTC----SCCCHHH----HHHHHHHCSSCEE-EES---CCCSHHHHHHHHHTTCSEEEESHHHH-TTSSCHHHHHHH
T ss_pred -CCCCc----CCCCHHH----HHHHHHHcCCCEE-EeC---CCCCHHHHHHHHHCCCHHHHHHHHHH-cCCCCHHHHHHH
Confidence 11222 1233332 2222223322222 222 222 1222345567999999987443 344579999999
Q ss_pred HHHcCCCcC
Q 020848 287 FKVLGLTPK 295 (320)
Q Consensus 287 i~~~G~~p~ 295 (320)
+.+.|+.+.
T Consensus 242 l~~~~~~~~ 250 (252)
T 1ka9_F 242 LAEKGVHVR 250 (252)
T ss_dssp HHHTTCCBC
T ss_pred HHHCCCCcC
Confidence 999998653
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.54 Score=41.06 Aligned_cols=76 Identities=12% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC--------chhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR--------KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge--------~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~ 126 (320)
.+++++++.++.+.+.|++-|-+++-..-++.+ ...++++...|+.+++ .++.+++ .....+.++.-.+
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISI--DT~~~~Va~aAl~ 123 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISV--DTSRPRVMREAVN 123 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEE--ECSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEE--eCCCHHHHHHHHH
Confidence 689999999999999999988887633333322 1334557777888774 3665544 4466788888888
Q ss_pred hccCeec
Q 020848 127 AGLTAYN 133 (320)
Q Consensus 127 aGld~v~ 133 (320)
+|.+-|+
T Consensus 124 aGa~iIN 130 (314)
T 3tr9_A 124 TGADMIN 130 (314)
T ss_dssp HTCCEEE
T ss_pred cCCCEEE
Confidence 8887664
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.32 Score=41.89 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCC----CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~----ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
+.+++++++.++...+.|.+-|-+++-.+-++ .+...++.+...++.+++.++.+++ .....+.++.-.++|.+
T Consensus 25 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSI--DT~~~~va~aAl~aGa~ 102 (280)
T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSI--DTMRADVARAALQNGAQ 102 (280)
T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEE--ECSCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEE--eCCCHHHHHHHHHcCCC
Confidence 37899999999999999999998876322222 1234567788888888754655443 34567777777777876
Q ss_pred eec
Q 020848 131 AYN 133 (320)
Q Consensus 131 ~v~ 133 (320)
-|+
T Consensus 103 iIN 105 (280)
T 1eye_A 103 MVN 105 (280)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.31 Score=42.83 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCC---CCCCchhH-HHHHHHHHHhhhcCceEEEeCCCCCHHHHHHH---HHh
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRD---TIGRKTNF-NQILEYVKDIRDMGMEVCCTLGMLEKHQAIEL---KKA 127 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~---~~ge~~~~-~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L---~~a 127 (320)
.++.++.++.++.+.+.|++.|-++....+ ..+.|... .+.++.++..+...+.+++.+.....+.++.+ .++
T Consensus 20 ~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~~e~l~~i~~~~~~~~~~L~r~~~~~~~dv~~~~~a~~~ 99 (320)
T 3dxi_A 20 DFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTPVSVLKHLRNISTKKIAIMLNEKNTTPEDLNHLLLPIIG 99 (320)
T ss_dssp CCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEGGGCCGGGHHHHHGGGTT
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccChHHHHHHHhhccCCeEEEEecCCCCChhhHHHHHHhhhc
Confidence 389999999999999999999888743211 00111111 22333333332222334443322223345555 346
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC-CHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE-AEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge-t~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|+|.+.+..+ .++.+...+.++.+++.|+.+...+....+. +.++..+.+..+ +.| ++.+.+
T Consensus 100 Gvd~~ri~~~-----------~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~-~~G--~~~i~l--- 162 (320)
T 3dxi_A 100 LVDMIRIAID-----------PQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAI-DKI--ADLFCM--- 162 (320)
T ss_dssp TCSEEEEEEC-----------GGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGG-TTT--CSEEEE---
T ss_pred CCCEEEEEec-----------HHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHh-hCC--CCEEEE---
Confidence 7887776531 1247888899999999999987766552221 111222222211 234 443332
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCChhH
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDFDA 282 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~~~ 282 (320)
++|. ....+.++.+++...+..++- .+.+-+ ...++.......++.+|++.+-. |-+ ..++..+.++
T Consensus 163 ---~Dt~----G~~~P~~~~~lv~~l~~~~~~-~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG-~~~GN~~~E~ 233 (320)
T 3dxi_A 163 ---VDSF----GGITPKEVKNLLKEVRKYTHV-PVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMG-RGAGNLKMEL 233 (320)
T ss_dssp ---ECTT----SCCCHHHHHHHHHHHHHHCCS-CEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCS-STTCBCBHHH
T ss_pred ---Cccc----CCCCHHHHHHHHHHHHHhCCC-eEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccC-CcccchhHHH
Confidence 2332 224677888888877777652 222110 00122222345688999998722 210 1245577888
Q ss_pred HHHHHHH
Q 020848 283 DQLMFKV 289 (320)
Q Consensus 283 ~~~~i~~ 289 (320)
++.+++.
T Consensus 234 lv~~L~~ 240 (320)
T 3dxi_A 234 LLTYLNK 240 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888887
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.34 E-value=1.2 Score=38.17 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 140 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~ 140 (320)
.+.++.+.+.|+..+.+.+-..-..| ..+++ +.++ ..++++.......++.++.+.+.+|.|.|.+.....
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~G---s~~~L----~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L- 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQG---APEFL----TAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASV- 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCC---CHHHH----HHHHHTSSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTS-
T ss_pred HHHHHHHHHCCCCEEEEeccccccCC---CHHHH----HHHHHhcCCCEEECCccCCHHHHHHHHHcCCCEEEEccccc-
Confidence 44455666789999987653222223 23333 3444 357887766677888899999999999998865332
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCC
Q 020848 141 EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV 220 (320)
Q Consensus 141 ~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~ 220 (320)
+.++..+.++.+++.|+.+-+. . .+.+|+ +.+.+++ ++.|+++.-. -+.+ .+
T Consensus 154 ----------~~~~l~~l~~~a~~lGl~~lve----v-h~~eEl----~~A~~~g--a~iIGinnr~---l~t~----~~ 205 (272)
T 3tsm_A 154 ----------DDDLAKELEDTAFALGMDALIE----V-HDEAEM----ERALKLS--SRLLGVNNRN---LRSF----EV 205 (272)
T ss_dssp ----------CHHHHHHHHHHHHHTTCEEEEE----E-CSHHHH----HHHTTSC--CSEEEEECBC---TTTC----CB
T ss_pred ----------CHHHHHHHHHHHHHcCCeEEEE----e-CCHHHH----HHHHhcC--CCEEEECCCC---CccC----CC
Confidence 3344556677788888764222 1 366664 3444677 7777776431 1111 23
Q ss_pred CHHHHHHHHHHHHHhCCCceeecCCccccc-ChhHHHHHHHcCCceEeeCCccccC
Q 020848 221 EIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLLTT 275 (320)
Q Consensus 221 ~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~-~~~~~~~~~~~Gan~~~~~~~~~~~ 275 (320)
+.+...++. ...|...+.++.+ ++ .++.-.....+|++.+++|+.+...
T Consensus 206 dl~~~~~L~----~~ip~~~~vIaes--GI~t~edv~~l~~~Ga~gvLVG~almr~ 255 (272)
T 3tsm_A 206 NLAVSERLA----KMAPSDRLLVGES--GIFTHEDCLRLEKSGIGTFLIGESLMRQ 255 (272)
T ss_dssp CTHHHHHHH----HHSCTTSEEEEES--SCCSHHHHHHHHTTTCCEEEECHHHHTS
T ss_pred ChHHHHHHH----HhCCCCCcEEEEC--CCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 333323322 2355433333321 22 2343456677899999999866543
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.68 Score=39.86 Aligned_cols=138 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
..+++++++.++...+.|++-|-+++.+.-++.++ ...+.+...++.+++ .++++++ .....+.++.-.++|.
T Consensus 34 ~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSI--DT~~~~va~aAl~aGa 111 (282)
T 1aj0_A 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISV--DTSKPEVIRESAKVGA 111 (282)
T ss_dssp CTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE--ECCCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEE--eCCCHHHHHHHHHcCC
Confidence 36899999999999999999999987333233222 345667777777774 3666544 3456777777777787
Q ss_pred Ceec-cCccccHHHHhh---hC--------C--CCC--------------HHHHHHHHHHHHHcCCe---eeeeEEEEeC
Q 020848 130 TAYN-HNLDTSREFYSK---II--------T--TRS--------------YDERLETLKHVREAGIN---VCSGGIIGLG 178 (320)
Q Consensus 130 d~v~-i~let~~~~~~~---i~--------~--~~~--------------~~~~l~~i~~a~~~Gi~---v~~~~i~Glg 178 (320)
+-|+ ++-...++.++. .. + +.+ .+...+.++.+.++|++ +-++--+|++
T Consensus 112 ~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~ 191 (282)
T 1aj0_A 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFG 191 (282)
T ss_dssp CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSS
T ss_pred CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcc
Confidence 7664 222111221111 00 0 011 34445566667777875 6666666666
Q ss_pred CCHHHHHHHHHHHhcC
Q 020848 179 EAEEDRVGLLHTLATL 194 (320)
Q Consensus 179 et~ed~~~~l~~l~~l 194 (320)
.+.++-.++++.+..+
T Consensus 192 k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 192 KNLSHNYSLLARLAEF 207 (282)
T ss_dssp CCHHHHHHHHHTGGGG
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6766666666555544
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.43 Score=40.64 Aligned_cols=135 Identities=13% Similarity=0.202 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
+.+.+.+++.++.+.+.|++-|-++|-.+-++.++ .-++++...++.+++.++.+++ .....+.++.-.++|.+
T Consensus 26 ~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSI--DT~~~~Va~~al~aGa~ 103 (270)
T 4hb7_A 26 FNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISV--DTFRSEVAEACLKLGVD 103 (270)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEE--ECSCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEE--ECCCHHHHHHHHHhccc
Confidence 36889999999999999999888877544444333 3456677888888765555443 44667888888888888
Q ss_pred eec-cCcccc-HHHHhhhC-----------CC----CC-----HHHHHHHHHHHHHcCCe---eeeeEEEEeCCCHHHHH
Q 020848 131 AYN-HNLDTS-REFYSKII-----------TT----RS-----YDERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 131 ~v~-i~let~-~~~~~~i~-----------~~----~~-----~~~~l~~i~~a~~~Gi~---v~~~~i~Glget~ed~~ 185 (320)
-|+ ++--.. ++.++.+. ++ .+ .+...+.++.+.++|++ +-++-=+|+|-+.++=.
T Consensus 104 iINDVs~g~~d~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~ 183 (270)
T 4hb7_A 104 MINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEA 183 (270)
T ss_dssp EEEETTTTSSCTHHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred eeccccccccchhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHH
Confidence 776 321111 22222111 00 01 12233445667777874 55555556677776655
Q ss_pred HHHHHH
Q 020848 186 GLLHTL 191 (320)
Q Consensus 186 ~~l~~l 191 (320)
++++.+
T Consensus 184 ~ll~~l 189 (270)
T 4hb7_A 184 EVMARL 189 (270)
T ss_dssp HHHTCH
T ss_pred HHHhhH
Confidence 554433
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=1.3 Score=46.02 Aligned_cols=214 Identities=8% Similarity=-0.030 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHHHcC--CCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEeC----CC------CCH
Q 020848 56 MTKDAVMQAAQKAKEAG--STRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCTL----GM------LEK 118 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g--~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~~----g~------l~~ 118 (320)
++.++.++.++.+.+.| +..+-+.||...+ .+ ...++.+.++.+.+++..+...... |. ..+
T Consensus 570 ~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~-~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~ 648 (1165)
T 2qf7_A 570 MRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLT-EDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVK 648 (1165)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHC-CCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcC-CCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHH
Confidence 89999999999999985 5556654332110 01 1234445555555543323333221 22 134
Q ss_pred HHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--C------CCHHHHHHHHHH
Q 020848 119 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--G------EAEEDRVGLLHT 190 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--g------et~ed~~~~l~~ 190 (320)
+.++...++|+|.+.+.. +. .+.+.....++.+++.|..+...+.+.. . .+.+.+.++++.
T Consensus 649 ~~i~~a~~~g~d~irif~-sl----------~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~ 717 (1165)
T 2qf7_A 649 YFVRQAAKGGIDLFRVFD-CL----------NWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVE 717 (1165)
T ss_dssp HHHHHHHHHTCCEEEEEC-TT----------CCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCEEEEEe-eH----------HHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHH
Confidence 678899999999987742 11 2345567888999999977766655431 1 367778999999
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
+.+.| ++.|.+ ++|. ....+.++.+++...+..+ +..+.+-+ ...++.-.....++.+||+.+-.-
T Consensus 718 ~~~~G--a~~i~l------~DT~----G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~t 784 (1165)
T 2qf7_A 718 LEKAG--AHIIAV------KDMA----GLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAA 784 (1165)
T ss_dssp HHHTT--CSEEEE------EETT----CCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCEEEE------eCcc----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEec
Confidence 99998 655443 2332 2355788888888777665 22222210 001121223467889999987221
Q ss_pred -Cccc-cCCCCChhHHHHHHHHcCCCc
Q 020848 270 -EKLL-TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 270 -~~~~-~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++- .++..+.++++.+++..|+.+
T Consensus 785 i~GlGe~~Gn~~le~vv~~L~~~g~~t 811 (1165)
T 2qf7_A 785 MDALSGNTSQPCLGSIVEALSGSERDP 811 (1165)
T ss_dssp CGGGCSBTSCCBHHHHHHHHTTSTTCC
T ss_pred ccccCCCccchhHHHHHHHHHhcCCCc
Confidence 0011 245677888888888887664
|
| >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.97 Score=40.39 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhhcCceEE--EeCCC-----CCHHHHHHHHHhc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDMGMEVC--CTLGM-----LEKHQAIELKKAG 128 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~~~~~i~--~~~g~-----l~~e~l~~L~~aG 128 (320)
+.++..+.++.+.+.|+++|+-+- +.+.+++ ...+.+-++++.+++.|+++. +++.. .+.+.++.|++.|
T Consensus 15 ~~~~~~~yi~~a~~~Gf~~IFTSL--~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~Lg~s~~dl~~~~~lG 92 (372)
T 2p0o_A 15 ITNDTIIYIKKMKALGFDGIFTSL--HIPEDDTSLYRQRLTDLGAIAKAEKMKIMVDISGEALKRAGFSFDELEPLIELG 92 (372)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEEE--CCC-----CHHHHHHHHHHHHHHHTCEEEEEECHHHHHTTTCBTTBCHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEccC--CccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 346777888999999999986532 2222222 466888899999999999854 34322 3557888999999
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
++.+.++
T Consensus 93 i~glRLD 99 (372)
T 2p0o_A 93 VTGLRMD 99 (372)
T ss_dssp CCEEEEC
T ss_pred CCEEEEc
Confidence 9988875
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.76 Score=37.45 Aligned_cols=191 Identities=16% Similarity=0.083 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCC-CHHH-HHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGML-EKHQ-AIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l-~~e~-l~~L~~aGld~ 131 (320)
.++++.++.++.+. .|++-+-++. |.....=.+.++.+++. +.++..+.... ..+. ++.+.++|+|.
T Consensus 10 ~~~~~~~~~~~~~~-~~~diie~G~--------p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~ 80 (211)
T 3f4w_A 10 LTLPEAMVFMDKVV-DDVDIIEVGT--------PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADY 80 (211)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECH--------HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhh-cCccEEEeCc--------HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCE
Confidence 56788888888764 4666554431 32234445667777743 56654443221 2344 89999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..... .+...+.++.+++.|+++.+.+ .+ .++. .+.++.+.+.| .+.+.+.+- ..|
T Consensus 81 v~v~~~~~------------~~~~~~~~~~~~~~g~~~~v~~-~~-~~t~---~~~~~~~~~~g--~d~i~v~~g--~~g 139 (211)
T 3f4w_A 81 VTVLGVTD------------VLTIQSCIRAAKEAGKQVVVDM-IC-VDDL---PARVRLLEEAG--ADMLAVHTG--TDQ 139 (211)
T ss_dssp EEEETTSC------------HHHHHHHHHHHHHHTCEEEEEC-TT-CSSH---HHHHHHHHHHT--CCEEEEECC--HHH
T ss_pred EEEeCCCC------------hhHHHHHHHHHHHcCCeEEEEe-cC-CCCH---HHHHHHHHHcC--CCEEEEcCC--Ccc
Confidence 98854322 2333556677778887754321 11 2333 34445556666 565544310 112
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
..+ ++...+ .+...+...++..+.+.+|- .++.-...+.+||+.++.|..+... .++.+.++.++
T Consensus 140 ~~~---~~~~~~----~i~~l~~~~~~~~i~~~gGI---~~~~~~~~~~~Gad~vvvGsai~~~--~d~~~~~~~l~ 204 (211)
T 3f4w_A 140 QAA---GRKPID----DLITMLKVRRKARIAVAGGI---SSQTVKDYALLGPDVVIVGSAITHA--ADPAGEARKIS 204 (211)
T ss_dssp HHT---TCCSHH----HHHHHHHHCSSCEEEEESSC---CTTTHHHHHTTCCSEEEECHHHHTC--SSHHHHHHHHH
T ss_pred ccc---CCCCHH----HHHHHHHHcCCCcEEEECCC---CHHHHHHHHHcCCCEEEECHHHcCC--CCHHHHHHHHH
Confidence 221 111222 23334445555444444432 2333355678899999999744432 34444444443
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.31 Score=40.24 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC------CCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG------MLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g------~l~~e~l~~L~~aGld~ 131 (320)
.+.+.+.++.+++.|++.|+|+-= ...| ....+.+.++++..+ ++++..+-. .-..+.++.|.+.|+++
T Consensus 75 ~~~M~~Di~~~~~~GadGvV~G~L--t~dg-~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~r 149 (224)
T 2bdq_A 75 LRIMEEDILRAVELESDALVLGIL--TSNN-HIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTR 149 (224)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCB--CTTS-SBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE--CCCC-CcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHcCCCE
Confidence 344555667788899999998642 1122 356677777777666 444433321 12266799999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
|.-|=.. ...+..+-++.++.+.+ ++- .+.+|.|-|-+.+.+.++++. .| +..+......-.+
T Consensus 150 ILTSG~~---------~~~~a~~g~~~L~~Lv~~a~~--ri~Im~GgGV~~~Ni~~l~~~---tG--v~e~H~s~i~~~~ 213 (224)
T 2bdq_A 150 ILLHGSS---------NGEPIIENIKHIKALVEYANN--RIEIMVGGGVTAENYQYICQE---TG--VKQAHGTRITQMA 213 (224)
T ss_dssp EEECSCS---------SCCCGGGGHHHHHHHHHHHTT--SSEEEECSSCCTTTHHHHHHH---HT--CCEEEETTCC---
T ss_pred EECCCCC---------CCCcHHHHHHHHHHHHHhhCC--CeEEEeCCCCCHHHHHHHHHh---hC--CCEEccccccCCC
Confidence 8754111 01112222344444433 222 356788887777766665533 34 5566666666666
Q ss_pred CCCCCC
Q 020848 211 GTPLQD 216 (320)
Q Consensus 211 gt~~~~ 216 (320)
|.|++.
T Consensus 214 ~~~~~~ 219 (224)
T 2bdq_A 214 GDPLEH 219 (224)
T ss_dssp ------
T ss_pred CCcchh
Confidence 777754
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=94.78 E-value=1.8 Score=41.52 Aligned_cols=225 Identities=16% Similarity=0.081 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-----CceE--EEeCCC-CCHHHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEV--CCTLGM-LEKHQAIELK 125 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-----~~~i--~~~~g~-l~~e~l~~L~ 125 (320)
..++.++-++.++.+.+.|++.|-.+. +... |..++ .++.+.+. +..+ ++.+.. .-+..++.|+
T Consensus 88 ~~~s~eeKl~Ia~~L~~lGVd~IEaGf---P~as-p~D~e----~v~~i~~~~l~~~~~~i~aL~r~~~~did~a~eal~ 159 (644)
T 3hq1_A 88 DPMSPARKRRMFDLLVRMGYKEIEVGF---PSAS-QTDFD----FVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACS 159 (644)
T ss_dssp SCCCHHHHHHHHHHHHHHTCSEEEEEC---TTTC-HHHHH----HHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-hhHHH----HHHHHHhcCCCCCCeEEEEEecCCHhhHHHHHHHHh
Confidence 448999999999999999999997754 2111 33333 33444322 3333 333221 1134456777
Q ss_pred HhccCeeccCccccHHHHhhhCCCCCHHHHHHH----HHHHHHcCC---eeeeeEEEEe----CCCHHHHHHHHHHHhcC
Q 020848 126 KAGLTAYNHNLDTSREFYSKIITTRSYDERLET----LKHVREAGI---NVCSGGIIGL----GEAEEDRVGLLHTLATL 194 (320)
Q Consensus 126 ~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~----i~~a~~~Gi---~v~~~~i~Gl----get~ed~~~~l~~l~~l 194 (320)
.+|.+.|.+.+-+.+ .+.+..-+.+.++.++. ++.+++.+- .+...+.++. .-+.+-+.+.++.+.+.
T Consensus 160 ~a~~~~Vhif~stSd-~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~ea 238 (644)
T 3hq1_A 160 GAPRAIVHFYNSTSI-LQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEV 238 (644)
T ss_dssp TCSEEEEEEEEECCH-HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEecCCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHh
Confidence 889999999887773 23222234566655554 444555432 2334445543 13566677888887775
Q ss_pred CC-CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--C-cccccChhHHHHHHHcCCceEee-
Q 020848 195 PT-HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--A-GRVRFSMPEQALCFLAGANSIFT- 268 (320)
Q Consensus 195 ~~-~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~-g~~~~~~~~~~~~~~~Gan~~~~- 268 (320)
+. +++...... ++.|- ....+.++..++...+..+|.. .+.++ + .-.++--.....++.+||..+-.
T Consensus 239 G~~Gad~~~~I~---LpDTv----G~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vdgt 311 (644)
T 3hq1_A 239 IAPTPERPIIFN---LPATV----EMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGC 311 (644)
T ss_dssp HCCCSSSCEEEE---EEESS----CCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEB
T ss_pred cCCCCCceeEEE---ecCCC----cccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEEec
Confidence 31 133211122 23332 2356778888888777777641 12221 1 00111122346788999998721
Q ss_pred --CCccccCCCCChhHHHHHHHHcCCCcC
Q 020848 269 --GEKLLTTPNNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 269 --~~~~~~~~~~~~~~~~~~i~~~G~~p~ 295 (320)
|-+ ..++....++++-++...|+.+.
T Consensus 312 i~G~G-ERaGNa~LE~lv~~L~~~Gi~tg 339 (644)
T 3hq1_A 312 LFGNG-ERTGNVCLVTLGLNLFSRGVDPQ 339 (644)
T ss_dssp GGGCS-STTCBCBHHHHHHHHHTTTCCCS
T ss_pred CCCCC-ccccCccHHHHHHHHHhcccCCc
Confidence 210 13455677888888877787654
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=94.75 E-value=0.49 Score=41.05 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----chhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge----~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++...+.|.+-|-+++-.+-++.+ ...++.+...|+.+++ .++++++. ....+.++.-.++|.+
T Consensus 60 ~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSID--T~~~~V~~aAl~aGa~ 137 (297)
T 1tx2_A 60 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISID--TYKAEVAKQAIEAGAH 137 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEE--CSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEe--CCCHHHHHHHHHcCCC
Confidence 578999999999999999999998633323322 2345667777788774 36665443 3567888887778887
Q ss_pred eec-cCcccc-HHHHhhh---C--------CC-CC--------HHHHHHHHHHHHHcCCe---eeeeEEEEeCCCHHHHH
Q 020848 131 AYN-HNLDTS-REFYSKI---I--------TT-RS--------YDERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 131 ~v~-i~let~-~~~~~~i---~--------~~-~~--------~~~~l~~i~~a~~~Gi~---v~~~~i~Glget~ed~~ 185 (320)
-|+ ++-... ++.++.+ . ++ .. .+...+.++.+.++|++ +-++--+|++.+.++-.
T Consensus 138 iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~ 217 (297)
T 1tx2_A 138 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNL 217 (297)
T ss_dssp EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHH
Confidence 764 332221 2222211 0 00 01 13334455556667775 55665555666666555
Q ss_pred HHHHHHhcC
Q 020848 186 GLLHTLATL 194 (320)
Q Consensus 186 ~~l~~l~~l 194 (320)
++++.+..+
T Consensus 218 ~ll~~l~~l 226 (297)
T 1tx2_A 218 EAMRNLEQL 226 (297)
T ss_dssp HHHHTGGGG
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=94.58 E-value=2.1 Score=37.27 Aligned_cols=230 Identities=17% Similarity=0.156 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCc-hhHHHHHHHHHHhh-hcCceEEEeCC-C--C-CHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIGRK-TNFNQILEYVKDIR-DMGMEVCCTLG-M--L-EKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~-~~ge~-~~~~~l~~~i~~~k-~~~~~i~~~~g-~--l-~~e~l~~L~~aG 128 (320)
+++|||.+.+....+.|..-+++-. +. ..|.| ...+.+.+++..+| ..++-+..|.| . . .++.+..+.+..
T Consensus 29 vTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~~ 106 (311)
T 3e49_A 29 VTPDEVAQASIGAAEAGAAVIHLHA--RDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLTTGGSPHMTVEERLRPATHYM 106 (311)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHTTHHHHHHHHCCCEEEECSCSCTTSCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998888743 33 12434 34455666666666 34555544443 2 2 355666666655
Q ss_pred cCeeccCcccc------------------HH-HHh----hhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHH
Q 020848 129 LTAYNHNLDTS------------------RE-FYS----KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 129 ld~v~i~let~------------------~~-~~~----~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~ 185 (320)
-|..+++.-+. +. .+. .+- ..+++.+.+.++.+.+.|++....+ + +..++.
T Consensus 107 Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~n~~~~i~~~~~~~~e~Gi~pE~e~-f----d~g~l~ 180 (311)
T 3e49_A 107 PELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVF-KNTFADIEFILKTCGGNGTRFEFEC-Y----DTSHLY 180 (311)
T ss_dssp CSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEE-CCCHHHHHHHHHHHHTTTCEEEEEE-C----SHHHHH
T ss_pred CCeeeecCCCcccccccchhhccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCeeEEEE-E----CHHHHH
Confidence 55444432221 00 111 111 2467788888999999998765442 2 445665
Q ss_pred HHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecC-CcccccChhHHHHHHHcCC
Q 020848 186 GLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS-AGRVRFSMPEQALCFLAGA 263 (320)
Q Consensus 186 ~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~-~g~~~~~~~~~~~~~~~Ga 263 (320)
....++++ |.-...+ +..|+- |-+.. -+.+++.+.-++..+..++|. ....+. -|+.. -+....++..|.
T Consensus 181 ~~~~l~~~-Gl~~~p~-~~~~vl--Gv~~g--~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~--~p~~~~A~~~GG 252 (311)
T 3e49_A 181 NLAHFVDR-KLATPPF-FVQTVF--GLLGG--IGPHPEDLAHMRRTADRLFGADYVWSILGAGRHQ--IPLASIGAAQGA 252 (311)
T ss_dssp HHHHHHHT-TCSCSSE-EEEEEE--SCTTS--CCCCHHHHHHHHHHHHHHHGGGEEEEEEECGGGH--HHHHHHHHTTTC
T ss_pred HHHHHHHc-CCCCCCe-EEEEEe--cCCCC--CCCCHHHHHHHHHHHHhhCCCCCeEEEEeeChhh--HHHHHHHHHcCC
Confidence 55555543 3211122 222322 32222 245677776666555344443 222222 12111 123355677787
Q ss_pred ceEee-CCccccCCC-------CChhHHHHHHHHcCCCcCCCCCCc
Q 020848 264 NSIFT-GEKLLTTPN-------NDFDADQLMFKVLGLTPKAPSFHE 301 (320)
Q Consensus 264 n~~~~-~~~~~~~~~-------~~~~~~~~~i~~~G~~p~~~~~~~ 301 (320)
|.-+. +|.+....| .-+++.+++++++|+.|...+.-+
T Consensus 253 hvRVGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vATp~EAR 298 (311)
T 3e49_A 253 NVRVGLEDSLWIAPGELAETNAAQVRKIRQVIEGLSLEVASPAEAR 298 (311)
T ss_dssp EEEECTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCCHHHHH
T ss_pred CeEEcCCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 74332 232222222 237788899999999988765433
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.45 Score=41.22 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCC----CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~----ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
+.+.+.+++.++.+.+.|++-+-+++-.+-++ .+...++.+...++.+++.++.+++ .....+.++.-.++|.+
T Consensus 48 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSI--DT~~~~Va~aAl~aGa~ 125 (294)
T 2dqw_A 48 YLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSV--DTRKPEVAEEALKLGAH 125 (294)
T ss_dssp -----CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEE--ECSCHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEE--ECCCHHHHHHHHHhCCC
Confidence 36789999999999999999888877322222 2234667888888888744555433 33556666666666666
Q ss_pred eec
Q 020848 131 AYN 133 (320)
Q Consensus 131 ~v~ 133 (320)
-|+
T Consensus 126 iIN 128 (294)
T 2dqw_A 126 LLN 128 (294)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.63 Score=38.76 Aligned_cols=195 Identities=14% Similarity=0.097 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe--cccCCCCCCchhHHHHHHHHHHhhhc-Cce----EEEeCCCCCHHHHHHHHHhccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMG--AAWRDTIGRKTNFNQILEYVKDIRDM-GME----VCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~--~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~----i~~~~g~l~~e~l~~L~~aGld 130 (320)
...+.+.++.+.+.|++-+.+. .|...+ .+..-.+.++.+++. +.+ +.+++ .++.++.+.++|.|
T Consensus 16 ~~~l~~~i~~~~~~Gad~ihldi~DG~fvp-----~~~~g~~~v~~lr~~~~~~~~vhlmv~d---p~~~i~~~~~aGad 87 (230)
T 1tqj_A 16 FSRLGEEIKAVDEAGADWIHVDVMDGRFVP-----NITIGPLIVDAIRPLTKKTLDVHLMIVE---PEKYVEDFAKAGAD 87 (230)
T ss_dssp GGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-----CBCBCHHHHHHHGGGCCSEEEEEEESSS---GGGTHHHHHHHTCS
T ss_pred HhHHHHHHHHHHHcCCCEEEEEEEecCCCc-----chhhhHHHHHHHHhhcCCcEEEEEEccC---HHHHHHHHHHcCCC
Confidence 4556666777777899876653 221111 111122555566542 322 33322 24568899999999
Q ss_pred eeccCcc--ccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 131 AYNHNLD--TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 131 ~v~i~le--t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
.+.+..+ .. . ...+.++.+++.|+.+++.+ .. .|..+.. +.+.+ + ++.+.+....|
T Consensus 88 gv~vh~e~~~~----------~---~~~~~~~~i~~~g~~~gv~~--~p-~t~~e~~---~~~~~-~--~D~v~~msv~p 145 (230)
T 1tqj_A 88 IISVHVEHNAS----------P---HLHRTLCQIRELGKKAGAVL--NP-STPLDFL---EYVLP-V--CDLILIMSVNP 145 (230)
T ss_dssp EEEEECSTTTC----------T---THHHHHHHHHHTTCEEEEEE--CT-TCCGGGG---TTTGG-G--CSEEEEESSCC
T ss_pred EEEECcccccc----------h---hHHHHHHHHHHcCCcEEEEE--eC-CCcHHHH---HHHHh-c--CCEEEEEEecc
Confidence 9999876 32 1 12456677788887765443 22 2333221 11122 2 56777777666
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
..|. ....+...+.+.++.+.....-.+..+.+.+| +..+.......+||+.++.|..+... .++.+.++.++
T Consensus 146 g~gg--q~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GG---I~~~~~~~~~~aGad~vvvGSai~~a--~d~~~~~~~l~ 218 (230)
T 1tqj_A 146 GFGG--QSFIPEVLPKIRALRQMCDERGLDPWIEVDGG---LKPNNTWQVLEAGANAIVAGSAVFNA--PNYAEAIAGVR 218 (230)
T ss_dssp ------CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESS---CCTTTTHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHH
T ss_pred ccCC--ccCcHHHHHHHHHHHHHHHhcCCCCcEEEECC---cCHHHHHHHHHcCCCEEEECHHHHCC--CCHHHHHHHHH
Confidence 3321 22222223332222222211111233333332 22233345667899999998744432 34666666665
Q ss_pred H
Q 020848 289 V 289 (320)
Q Consensus 289 ~ 289 (320)
+
T Consensus 219 ~ 219 (230)
T 1tqj_A 219 N 219 (230)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=1 Score=38.95 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC----CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~----ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+++.+++.++.+.+.|+.-|-+++-.+-++ .+...++.+...|+.+++.++.+++ .....+.++.-.++|.+-
T Consensus 43 ~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSI--DT~~~~Va~aAl~aGa~i 120 (294)
T 2y5s_A 43 LARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLSI--DTYKPAVMRAALAAGADL 120 (294)
T ss_dssp -CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEEE--ECCCHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEE--ECCCHHHHHHHHHcCCCE
Confidence 6789999999999999999888887332222 1234567788888888754655544 346678888877788776
Q ss_pred ec
Q 020848 132 YN 133 (320)
Q Consensus 132 v~ 133 (320)
|+
T Consensus 121 IN 122 (294)
T 2y5s_A 121 IN 122 (294)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.20 E-value=1 Score=38.50 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHh--ccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA--GLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~a--Gld~v 132 (320)
.+.+.+++.++...+.|..-+-++++. .+....+.+..+++.+++ .++++++. ....+.++.-.++ |.+-|
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s----~~~eE~~rv~~vi~~l~~~~~~pisID--T~~~~v~~aal~a~~Ga~iI 104 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGP----TADDPVRVMEWLVKTIQEVVDLPCCLD--STNPDAIEAGLKVHRGHAMI 104 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCS----CSSCHHHHHHHHHHHHHHHCCCCEEEE--CSCHHHHHHHHHHCCSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCc----CchhHHHHHHHHHHHHHHhCCCeEEEe--CCCHHHHHHHHHhCCCCCEE
Confidence 567999999999999999999887754 122356788888888875 36665443 3578888888888 88777
Q ss_pred c-cC
Q 020848 133 N-HN 135 (320)
Q Consensus 133 ~-i~ 135 (320)
+ ++
T Consensus 105 Ndvs 108 (271)
T 2yci_X 105 NSTS 108 (271)
T ss_dssp EEEC
T ss_pred EECC
Confidence 5 44
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.12 E-value=1.3 Score=37.57 Aligned_cols=204 Identities=15% Similarity=0.076 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
..+.++.+.+.|++.+.+..-.....+.. ...+.++.++ ..++++.+..|..+.+.++.+.++|+|.+.++-...
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g----~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSG----YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSC----CCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCc----ccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 34455566678999999865321111111 1345566666 457888888888888999999999999998874322
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcC--C-e--eeeeE--------EEEeCCCH---HHHHHHHHHHhcCCCCCCeeee
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAG--I-N--VCSGG--------IIGLGEAE---EDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~G--i-~--v~~~~--------i~Glget~---ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
. ...+++...+.++ ..| . . +.+++ +.-.+... .+..+.++.+.++| +..+.+
T Consensus 108 ~-------~~~~~~~~~~~~~---~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G--~~~i~~ 175 (266)
T 2w6r_A 108 F-------REIDMRELKEYLK---KHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRG--AGEILL 175 (266)
T ss_dssp ------------CHHHHHHCC-------CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEE
T ss_pred h-------CCCCHHHHHHHHH---HcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcC--CCEEEE
Confidence 0 0001222222222 223 1 1 22222 11123210 12344555566777 555544
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCCCChhH
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPNNDFDA 282 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~ 282 (320)
.... ..|+. ..++.+ .+...+...+-+.+ ..+ ++. ++.-...+.+||+.++.|..+. .......+
T Consensus 176 t~~~-~~g~~----~g~~~~----~i~~l~~~~~ipvi-a~G---GI~~~ed~~~~~~~Gadgv~vgsal~-~~~~~~~~ 241 (266)
T 2w6r_A 176 TSID-RDGTK----SGYDTE----MIRFVRPLTTLPII-ASG---GAGKMEHFLEAFLAGADAALAASVFH-FREIDMRE 241 (266)
T ss_dssp EETT-TTTTC----SCCCHH----HHHHHGGGCCSCEE-EES---CCCSHHHHHHHHHHTCSEEEESTTTC---------
T ss_pred Eeec-CCCCc----CCCCHH----HHHHHHHHcCCCEE-EeC---CCCCHHHHHHHHHcCCHHHHccHHHH-cCCCCHHH
Confidence 3211 11322 123332 22222222221222 222 222 2222345568999999997544 33346788
Q ss_pred HHHHHHHcCCCc
Q 020848 283 DQLMFKVLGLTP 294 (320)
Q Consensus 283 ~~~~i~~~G~~p 294 (320)
..+.+.+.|+.+
T Consensus 242 ~~~~l~~~g~~~ 253 (266)
T 2w6r_A 242 LKEYLKKHGVNV 253 (266)
T ss_dssp ------------
T ss_pred HHHHHHHCCCcc
Confidence 888888998853
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.22 Score=41.88 Aligned_cols=190 Identities=7% Similarity=0.041 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhc---CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 58 KDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
+..+.++++.+.+.|++-+.+ -.|... | .+..=.+.++.+++. ++.+++++. +..++.+.++|.|.+
T Consensus 25 ~~~l~~~i~~~~~~gad~lhvDvmDG~fv----p-n~t~G~~~v~~lr~~~~~DvhLMv~~p---~~~i~~~~~aGAd~i 96 (237)
T 3cu2_A 25 WLQLNEEVTTLLENQINVLHFDIADGQFS----S-LFTVGAIGIKYFPTHCFKDVHLMVRNQ---LEVAKAVVANGANLV 96 (237)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEEEEBSSSS----S-CBCBCTHHHHTSCTTSEEEEEEECSCH---HHHHHHHHHTTCSEE
T ss_pred cccHHHHHHHHHHcCCCEEEEEEecCccc----c-chhhhHHHHHHHhhhCCCCeEEEEECH---HHHHHHHHHcCCCEE
Confidence 345566677777788887655 232211 1 111111444555532 444444433 678999999999998
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc---------CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREA---------GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~---------Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+..++. ... .+.++.+++. |.++++.+ . ..|..+. ++.+.+ .++.+.+
T Consensus 97 tvH~ea~----------~~~---~~~i~~i~~~~~~~~~~~~g~~~gv~l--~-p~Tp~~~---l~~~l~---~~D~vlv 154 (237)
T 3cu2_A 97 TLQLEQY----------HDF---ALTIEWLAKQKTTYANQVYPVLIGACL--C-PETPISE---LEPYLD---QIDVIQL 154 (237)
T ss_dssp EEETTCT----------TSH---HHHHHHHTTCEEEETTEEEECEEEEEE--C-TTSCGGG---GTTTTT---TCSEEEE
T ss_pred EEecCCc----------ccH---HHHHHHHHhcccccccccCCceEEEEE--e-CCChHHH---HHHHhh---cCceeee
Confidence 8877653 112 4566777777 66554443 1 2333221 111111 2677777
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHH--cCCceEeeCCccccCCC
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFL--AGANSIFTGEKLLTTPN 277 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~--~Gan~~~~~~~~~~~~~ 277 (320)
+...| |+.-+ .. ....+..++..|.+.+. ..+.+.+ ++..+....... +||+.++.|..+.. .
T Consensus 155 Msv~p--gfggq--~f--~~~~l~ki~~lr~~~~~~~~~~~I~vdG---GI~~~~~~~~~~~~aGad~~VvGSaIf~-~- 223 (237)
T 3cu2_A 155 LTLDP--RNGTK--YP--SELILDRVIQVEKRLGNRRVEKLINIDG---SMTLELAKYFKQGTHQIDWLVSGSALFS-G- 223 (237)
T ss_dssp ESEET--TTTEE--CC--HHHHHHHHHHHHHHHGGGGGGCEEEEES---SCCHHHHHHHHHSSSCCCCEEECGGGGS-S-
T ss_pred eeecc--CcCCe--ec--ChhHHHHHHHHHHHHHhcCCCceEEEEC---CcCHHHHHHHHHhCCCCcEEEEeeHHhC-C-
Confidence 77766 43311 11 34445555556655542 2333333 344555567788 99999999974443 2
Q ss_pred CChhHHHHHHHH
Q 020848 278 NDFDADQLMFKV 289 (320)
Q Consensus 278 ~~~~~~~~~i~~ 289 (320)
++.+.++.+++
T Consensus 224 -d~~~~~~~l~~ 234 (237)
T 3cu2_A 224 -ELKTNLKVWKS 234 (237)
T ss_dssp -CHHHHHHHHHH
T ss_pred -CHHHHHHHHHH
Confidence 56666666654
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=93.88 E-value=2.4 Score=35.24 Aligned_cols=196 Identities=13% Similarity=0.044 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+.+..-+....+.+ . . +.++.++ ..++++.++.+..+++.++.+.++|+|.|.++.+.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~-~---~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGD-N---R-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCC-C---H-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCC-h---H-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchH
Confidence 445556777779999998853111111111 1 2 5566665 45788888888889999999999999999987654
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----EEEeCCC--HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----IIGLGEA--EEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----i~Glget--~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+ +.+...+.++.+.. .+.+.++. +.-.|.. ..+..+.++.+.++| ++.+.+....+- ++
T Consensus 108 l~----------~p~~~~~~~~~~g~-~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G--~~~i~~~~~~~~-~~ 173 (244)
T 1vzw_A 108 LE----------TPEWVAKVIAEHGD-KIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEG--CARYVVTDIAKD-GT 173 (244)
T ss_dssp HH----------CHHHHHHHHHHHGG-GEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTT--CCCEEEEEC------
T ss_pred hh----------CHHHHHHHHHHcCC-cEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCC--CCEEEEeccCcc-cc
Confidence 31 12223333333321 11122222 2212221 013455566667777 666666544331 21
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccCh-hHHHHHHHc---CCceEeeCCccccCCCCChhHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSM-PEQALCFLA---GANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~-~~~~~~~~~---Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
. ..++.+.+.++. .... ..+-..+ ++.. +.-...+.+ ||+.++.|..+.. ...+..+..+.+
T Consensus 174 ~----~g~~~~~~~~i~----~~~~-ipvia~G---GI~~~~d~~~~~~~~~~Gadgv~vG~al~~-~~~~~~~~~~~~ 239 (244)
T 1vzw_A 174 L----QGPNLELLKNVC----AATD-RPVVASG---GVSSLDDLRAIAGLVPAGVEGAIVGKALYA-KAFTLEEALEAT 239 (244)
T ss_dssp ------CCCHHHHHHHH----HTCS-SCEEEES---CCCSHHHHHHHHTTGGGTEEEEEECHHHHT-TSSCHHHHHHHH
T ss_pred c----CCCCHHHHHHHH----HhcC-CCEEEEC---CCCCHHHHHHHHhhccCCCceeeeeHHHHc-CCCCHHHHHHHh
Confidence 1 123333322222 2222 1222222 2222 333456667 9999998875443 233456655544
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.76 E-value=3.1 Score=36.06 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHH--hccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK--AGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~--aGld~v 132 (320)
.+++++++.++...+.|++-+-+++|... ..+...+.+++..++.+++ .++++++. ....+.++.-.+ +|.+-|
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~~~-v~~~eem~rvv~~i~~~~~~~~vpisID--T~~~~V~eaaL~~~~Ga~iI 110 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDDGL-LDARTEMTTFLNLIMSEPEIARVPVMID--SSKWEVIEAGLKCLQGKSIV 110 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCCTT-SCHHHHHHHHHHHHHTCHHHHTSCEEEE--CSCHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHhhhcCCCeEEEe--CCCHHHHHHHHHhcCCCCEE
Confidence 57899999999999999998888775322 2333455666666665543 35665443 356777777666 577654
Q ss_pred c-cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE--EEeCCCHHHHHHHHH----HH-hcCCCCCCeeeee
Q 020848 133 N-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLH----TL-ATLPTHPESVPIN 204 (320)
Q Consensus 133 ~-i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~----~l-~~l~~~~~~v~~~ 204 (320)
+ ++.+.. -+.+.+.+..+++.|..+.+--+ -|...+.++..++.+ .+ .+.|...+.|-+-
T Consensus 111 NdIs~~~~------------d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilD 178 (300)
T 3k13_A 111 NSISLKEG------------EEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFD 178 (300)
T ss_dssp EEECSTTC------------HHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred EeCCcccC------------ChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 3 232211 11223456677788887543333 355667776554443 32 5566433555555
Q ss_pred eee-ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccCh------------hHHHHHHHcCCceEeeC
Q 020848 205 ALL-AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSM------------PEQALCFLAGANSIFTG 269 (320)
Q Consensus 205 ~~~-p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~------------~~~~~~~~~Gan~~~~~ 269 (320)
+.+ |+ ++..... .-..-++++.+...+..+|...+-+..++.+|.- -.-..++.+|.+..+.+
T Consensus 179 Pgig~~-gk~~~~~-~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Ivn 254 (300)
T 3k13_A 179 PNVLAV-ATGIEEH-NNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIVN 254 (300)
T ss_dssp CCCCCC-SSSCGGG-TTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCcc-CCChHHh-hHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCCEEecC
Confidence 443 22 1111110 0113455666666665566544333222222221 13345778899887654
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.70 E-value=2.9 Score=35.46 Aligned_cols=187 Identities=11% Similarity=0.121 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCch-------------hHHHHHHHHHHhhh-c-CceEEEeCCCC----
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRD-M-GMEVCCTLGML---- 116 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~-------------~~~~l~~~i~~~k~-~-~~~i~~~~g~l---- 116 (320)
+.++.++.++.+.+.|++.+-++.....+. ..|. ..+.++++++.+++ . ++++..- +..
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m-~y~n~v~ 107 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM-TYYNPIF 107 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE-CCHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE-ecCcHHH
Confidence 567888889999999999998864211111 0111 22467788888884 3 6664331 111
Q ss_pred ---CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhc
Q 020848 117 ---EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLAT 193 (320)
Q Consensus 117 ---~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~ 193 (320)
.++.++.++++|+|.+.+. .-.+++..+.++.+++.|+.+. .++....+.+.+.++.....
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~-------------dl~~ee~~~~~~~~~~~gl~~i--~l~~p~t~~~rl~~ia~~a~- 171 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP-------------DLPPEEAEELKAVMKKYVLSFV--PLGAPTSTRKRIKLICEAAD- 171 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT-------------TCCHHHHHHHHHHHHHTTCEEC--CEECTTCCHHHHHHHHHHCS-
T ss_pred HhhHHHHHHHHHHcCCCEEEEC-------------CCCHHHHHHHHHHHHHcCCcEE--EEeCCCCCHHHHHHHHHhCC-
Confidence 1577888999999987773 1234666777788899998651 22222334444444444331
Q ss_pred CCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 194 l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
+ .+........-|.. .+.+..+....++..|.... ..+-+. .++....+...+.+||+.+++|..+.
T Consensus 172 -g----fiy~vs~~g~TG~~----~~~~~~~~~~~v~~vr~~~~-~pv~vG---~GI~t~e~~~~~~~gADgvIVGSai~ 238 (262)
T 2ekc_A 172 -E----MTYFVSVTGTTGAR----EKLPYERIKKKVEEYRELCD-KPVVVG---FGVSKKEHAREIGSFADGVVVGSALV 238 (262)
T ss_dssp -S----CEEEESSCC-------------CHHHHHHHHHHHHHCC-SCEEEE---SSCCSHHHHHHHHTTSSEEEECHHHH
T ss_pred -C----CEEEEecCCccCCC----CCcCcccHHHHHHHHHhhcC-CCEEEe---CCCCCHHHHHHHHcCCCEEEECHHHH
Confidence 1 22222221122222 12221344556666666552 222222 23332334455889999999986443
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.58 E-value=2.6 Score=35.07 Aligned_cols=159 Identities=12% Similarity=0.073 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c-CceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~-~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+++++.+.++.+.+.|++-+-+.-- .|.. .+.++.+++ . ++-+-. ...++.++++...++|.+.+.
T Consensus 43 ~~~~~a~~~a~al~~gGi~~iEvt~~------t~~a----~e~I~~l~~~~~~~~iGa-GTVlt~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 43 DNAEDIIPLGKVLAENGLPAAEITFR------SDAA----VEAIRLLRQAQPEMLIGA-GTILNGEQALAAKEAGATFVV 111 (232)
T ss_dssp SSGGGHHHHHHHHHHTTCCEEEEETT------STTH----HHHHHHHHHHCTTCEEEE-ECCCSHHHHHHHHHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------CCCH----HHHHHHHHHhCCCCEEeE-CCcCCHHHHHHHHHcCCCEEE
Confidence 57889999999999999998877431 1222 244444442 2 232222 125889999999999999885
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 213 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~ 213 (320)
..- .+ .+.++.+++.|+.+-.+ .. |..|+... .++| .+.+.+++ ..+
T Consensus 112 sP~-------------~~----~~vi~~~~~~gi~~ipG----v~-TptEi~~A----~~~G--ad~vK~FP-----a~~ 158 (232)
T 4e38_A 112 SPG-------------FN----PNTVRACQEIGIDIVPG----VN-NPSTVEAA----LEMG--LTTLKFFP-----AEA 158 (232)
T ss_dssp CSS-------------CC----HHHHHHHHHHTCEEECE----EC-SHHHHHHH----HHTT--CCEEEECS-----TTT
T ss_pred eCC-------------CC----HHHHHHHHHcCCCEEcC----CC-CHHHHHHH----HHcC--CCEEEECc-----Ccc
Confidence 421 11 24456677778776443 32 77776655 3566 67777632 211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 214 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 214 ~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
+ ..- ..+...+.-+|+..+-..+ ++.++.....+.+|+.....|.
T Consensus 159 ~------gG~---~~lkal~~p~p~ip~~ptG---GI~~~n~~~~l~aGa~~~vgGs 203 (232)
T 4e38_A 159 S------GGI---SMVKSLVGPYGDIRLMPTG---GITPSNIDNYLAIPQVLACGGT 203 (232)
T ss_dssp T------THH---HHHHHHHTTCTTCEEEEBS---SCCTTTHHHHHTSTTBCCEEEC
T ss_pred c------cCH---HHHHHHHHHhcCCCeeeEc---CCCHHHHHHHHHCCCeEEEECc
Confidence 1 111 3334444455653222222 2233334566788887766665
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=1.2 Score=37.09 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+.+..-+....+.+ . . +.++.++ ..++++.++.|..+++.++.+.++|+|.|.++.+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~-~---~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGS-N---H-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCC-C---H-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCC-h---H-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECchH
Confidence 445556677778999998853111111211 1 2 5556665 45788888888899999999999999999987644
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=93.45 E-value=3.2 Score=35.30 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCchh-------------HHHHHHHHHHhhh--cCceEE-Ee--CCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-------------FNQILEYVKDIRD--MGMEVC-CT--LGM-- 115 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~-------------~~~l~~~i~~~k~--~~~~i~-~~--~g~-- 115 (320)
+++...+.++.+.+.|++-+-++--...+. ..|.. .+.++++++.+++ ..+++. .+ |-.
T Consensus 30 ~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~ 109 (267)
T 3vnd_A 30 SPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFA 109 (267)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 578888888888999999888863211111 11211 2367888888884 355532 21 101
Q ss_pred -CCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 116 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 116 -l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
-.++.++.++++|+|.+.+.-- .+++..+..+.+++.|++. .+++...-+.+.+..+.+.
T Consensus 110 ~g~e~f~~~~~~aGvdgvii~Dl-------------p~ee~~~~~~~~~~~gl~~--i~liaP~t~~eri~~i~~~---- 170 (267)
T 3vnd_A 110 NGIDEFYTKAQAAGVDSVLIADV-------------PVEESAPFSKAAKAHGIAP--IFIAPPNADADTLKMVSEQ---- 170 (267)
T ss_dssp HCHHHHHHHHHHHTCCEEEETTS-------------CGGGCHHHHHHHHHTTCEE--ECEECTTCCHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHcCCCEEEeCCC-------------CHhhHHHHHHHHHHcCCeE--EEEECCCCCHHHHHHHHHh----
Confidence 1267899999999999877421 1233456677888899874 2233223333433333332
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHH-HHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL-CFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~-~~~~Gan~~~~~~~~ 272 (320)
. ...+......+..|.. ..-+.+ ....++..|.... ..+-+. .++....+.. .+.+||+.++.|..+
T Consensus 171 ~--~gfvY~vS~~GvTG~~--~~~~~~---~~~~v~~vr~~~~-~pv~vG---fGI~~~e~~~~~~~~gADgvVVGSai 238 (267)
T 3vnd_A 171 G--EGYTYLLSRAGVTGTE--SKAGEP---IENILTQLAEFNA-PPPLLG---FGIAEPEQVRAAIKAGAAGAISGSAV 238 (267)
T ss_dssp C--CSCEEESCCCCCC----------C---HHHHHHHHHTTTC-CCEEEC---SSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred C--CCcEEEEecCCCCCCc--cCCcHH---HHHHHHHHHHhcC-CCEEEE---CCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 2 1234443444433432 111222 3344444454432 122222 2333233344 788999999998643
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=93.43 E-value=2.5 Score=34.08 Aligned_cols=189 Identities=14% Similarity=0.066 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCC--HHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE--KHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~--~e~l~~L~~aGld~ 131 (320)
.+.++.++.++.+.. |+..+.++.+ .....=.+.++.+++. +.++.......+ ...++.+.++|.|.
T Consensus 10 ~~~~~~~~~~~~~~~-~v~~iev~~~--------~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 10 LSTEAALELAGKVAE-YVDIIELGTP--------LIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADL 80 (207)
T ss_dssp SCHHHHHHHHHHHGG-GCSEEEECHH--------HHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHhhc-cCCEEEECcH--------HHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCE
Confidence 578898988888776 7887777432 2223334456666643 555443222223 34488999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCee-eeeeeeec-
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESV-PINALLAV- 209 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v-~~~~~~p~- 209 (320)
+.+.....+ +...+.++.+++.|..+.+.+. .-.|.++..+. +.+.+ .+.+ .+..+.|.
T Consensus 81 v~vh~~~~~------------~~~~~~~~~~~~~g~~~gv~~~--s~~~p~~~~~~---~~~~g--~d~v~~~~~~~~~~ 141 (207)
T 3ajx_A 81 VTVLGSADD------------STIAGAVKAAQAHNKGVVVDLI--GIEDKATRAQE---VRALG--AKFVEMHAGLDEQA 141 (207)
T ss_dssp EEEETTSCH------------HHHHHHHHHHHHHTCEEEEECT--TCSSHHHHHHH---HHHTT--CSEEEEECCHHHHT
T ss_pred EEEeccCCh------------HHHHHHHHHHHHcCCceEEEEe--cCCChHHHHHH---HHHhC--CCEEEEEecccccc
Confidence 987553321 1223445566677877533221 12255553332 23445 6677 33344332
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
.|.. +. . +.++.. ... +..+.+.+ ++.++.....+.+||+.+..|..+... .++.+.++.+++
T Consensus 142 ~g~~-----~~-~-~~i~~~--~~~---~~pi~v~G---GI~~~~~~~~~~aGad~vvvGsaI~~~--~dp~~~~~~~~~ 204 (207)
T 3ajx_A 142 KPGF-----DL-N-GLLAAG--EKA---RVPFSVAG---GVKVATIPAVQKAGAEVAVAGGAIYGA--ADPAAAAKELRA 204 (207)
T ss_dssp STTC-----CT-H-HHHHHH--HHH---TSCEEEES---SCCGGGHHHHHHTTCSEEEESHHHHTS--SSHHHHHHHHHH
T ss_pred cCCC-----ch-H-HHHHHh--hCC---CCCEEEEC---CcCHHHHHHHHHcCCCEEEEeeeccCC--CCHHHHHHHHHH
Confidence 2321 12 1 222211 111 22233333 233333456689999999888644332 346666655554
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=3.7 Score=34.41 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeC---------CCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL---------GMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~---------g~l~~e~l~~L~~ 126 (320)
+++..+.+.++.+- .-++-+.|++|+.... ..+.+.+.++.+++.|+.+..-. | .-++.++..++
T Consensus 23 lg~~~~~d~Le~~g-~yID~lKfg~Gt~~l~----~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg-~~~~yl~~~k~ 96 (251)
T 1qwg_A 23 LPPKFVEDYLKVCG-DYIDFVKFGWGTSAVI----DRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG-KFDEFLNECEK 96 (251)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECTTGGGGS----CHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh-hhcceEEecCceeeec----CHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcC-cHHHHHHHHHH
Confidence 77777766665432 3478888887643221 23448888888888888764321 3 45888999999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-------CCCHHHHHHHHHHHhcCCCCCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~~~~~ 199 (320)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+++-+.+ |. -.+.+++.+.++.-.+-| .+
T Consensus 97 lGf~~iEiS~G~i---------~l~~~~~~~~I~~~~~~G~~v~~Ev--G~k~~~~~~~~~~~~~I~~~~~~LeAG--A~ 163 (251)
T 1qwg_A 97 LGFEAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTEV--GKKMPDKDKQLTIDDRIKLINFDLDAG--AD 163 (251)
T ss_dssp HTCCEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEEE--CCSSHHHHTTCCHHHHHHHHHHHHHHT--CS
T ss_pred cCCCEEEECCCcc---------cCCHHHHHHHHHHHHHCCCEEeeec--cccCCcccCCCCHHHHHHHHHHHHHCC--Cc
Confidence 9999999975332 3467888999999999999874432 33 135677777777777777 55
Q ss_pred eeee
Q 020848 200 SVPI 203 (320)
Q Consensus 200 ~v~~ 203 (320)
.|-+
T Consensus 164 ~Vii 167 (251)
T 1qwg_A 164 YVII 167 (251)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=92.41 E-value=5.1 Score=34.85 Aligned_cols=232 Identities=13% Similarity=0.160 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCc-hhHHHHHHHHHHhh-hcCceEEEeCC-C--C-CHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIGRK-TNFNQILEYVKDIR-DMGMEVCCTLG-M--L-EKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~-~~ge~-~~~~~l~~~i~~~k-~~~~~i~~~~g-~--l-~~e~l~~L~~aG 128 (320)
+++|||.+.+....+.|..-+++-. +. ..|.| ...+.+.+++..++ ..++-+..|.| . . .++.+..+.+..
T Consensus 29 vTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~TTgg~~~~~~eerla~~~~~~ 106 (311)
T 3e02_A 29 ITPEEIVKEGVAAAEAGAAMLHLHA--RDPLNGRPSQDPDLFMRFLPQLKERTDAILNITTGGGLGMSLDERLAPARAAR 106 (311)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHTTTHHHHHHHCCCEEEECSSCSTTCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEECCCCCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998888743 33 12334 34455666666666 34555544443 2 2 355666666655
Q ss_pred cCeeccCcccc------------------H-HHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHH
Q 020848 129 LTAYNHNLDTS------------------R-EFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 186 (320)
Q Consensus 129 ld~v~i~let~------------------~-~~~~~i~~---~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 186 (320)
-|..+++.-+. + ..+..-.. ..+++.+.+.++.+.+.|++....+ + +..++..
T Consensus 107 Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi~pE~e~-f----d~g~l~~ 181 (311)
T 3e02_A 107 PEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGTRFEFEC-Y----DVGHLYN 181 (311)
T ss_dssp CSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTCEEEEEE-C----SHHHHHH
T ss_pred CCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeEEEEE-E----cHHHHHH
Confidence 55444332111 1 01111011 3467788888999999998765442 2 4456655
Q ss_pred HHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecC-CcccccChhHHHHHHHcCCc
Q 020848 187 LLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS-AGRVRFSMPEQALCFLAGAN 264 (320)
Q Consensus 187 ~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~-~g~~~~~~~~~~~~~~~Gan 264 (320)
...++++ |.-...+. ..|+- |-+.. -+.+++.+..+++.+..++|. ....+. -|+.. -+....++..|.|
T Consensus 182 ~~~l~~~-Gl~~~p~~-~~~vl--Gv~~g--~~~~~~~L~~~~~~~~~~~~~~~~wsv~~~Gr~~--~p~~~~A~~~GGh 253 (311)
T 3e02_A 182 LAHFVDR-KLVEPPFF-LQCVF--GILGG--IGADPENLLHMRTIADRLFGQDYYLSVLAAGRHQ--MPFVTMSAILGGN 253 (311)
T ss_dssp HHHHHHT-TSSCSCEE-EEEEE--CCBTS--CCSCHHHHHHHHHHHHHHHTTSEEEEEEECGGGH--HHHHHHHHHTTCE
T ss_pred HHHHHHc-CCCCCCeE-EEEEe--cCCCC--CCCCHHHHHHHHHHHHhhCCCCCceEEEeeChhh--HHHHHHHHHcCCC
Confidence 5555543 32111222 22322 32222 245677777766665444553 322222 12111 1234566777887
Q ss_pred eEee-CCccccCCC-------CChhHHHHHHHHcCCCcCCCCCCcC
Q 020848 265 SIFT-GEKLLTTPN-------NDFDADQLMFKVLGLTPKAPSFHEG 302 (320)
Q Consensus 265 ~~~~-~~~~~~~~~-------~~~~~~~~~i~~~G~~p~~~~~~~~ 302 (320)
.-+. +|.+....| .-+++.+++++++|+.|...+.-+.
T Consensus 254 vRVGlEDnl~~~~G~lA~sNaelV~~~~~i~~~lgr~vATp~EAR~ 299 (311)
T 3e02_A 254 VRVGLEDSLYSGKGQLATSNAEQVRKIRRIIEELSLDIATPDEARA 299 (311)
T ss_dssp EEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCCBCCHHHHHH
T ss_pred eEEccCcceecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 4332 232222222 2377888999999999987654333
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.54 Score=41.20 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCC---CCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI---GRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~---ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
+.+.+.+++.++.+.+.|.+-|-++|-.+-++ .+...++.+...|+.+++. ++.+++ .....+.++.-.++|.
T Consensus 61 ~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI--DT~~~~VaeaAl~aGa 138 (318)
T 2vp8_A 61 TFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV--DTWRAQVAKAACAAGA 138 (318)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE--ECSCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE--eCCCHHHHHHHHHhCC
Confidence 36789999999999999999888876322222 1123456677778887743 665544 4466788888778887
Q ss_pred Ceec
Q 020848 130 TAYN 133 (320)
Q Consensus 130 d~v~ 133 (320)
+-|+
T Consensus 139 ~iIN 142 (318)
T 2vp8_A 139 DLIN 142 (318)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7554
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=12 Score=38.77 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--Cce--EEEe--C--CC--C----CHH
Q 020848 56 MTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--GM--L----EKH 119 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~--~--g~--l----~~e 119 (320)
++.++.++.++.+.+. |+..+-..||.....+-|...++=.+.++.+++. +.. .+.. | |. . .++
T Consensus 552 ~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~ 631 (1150)
T 3hbl_A 552 VRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHK 631 (1150)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHH
Confidence 7899999999998887 8888876544222111011111223344444421 233 3332 1 21 1 355
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE---e------CCCHHHHHHHHHH
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG---L------GEAEEDRVGLLHT 190 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G---l------get~ed~~~~l~~ 190 (320)
.++...++|+|.+.+..-.. +.......++.+++.|..+...+.+- + ..+.+.+.++++.
T Consensus 632 ~v~~a~~~Gvd~irif~~~s-----------d~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~ 700 (1150)
T 3hbl_A 632 FVQESAKAGIDVFRIFDSLN-----------WVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKE 700 (1150)
T ss_dssp HHHHHHHTTCCEEEEECTTC-----------CGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEEeeCC-----------HHHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHH
Confidence 68888899999988754222 12222456677778887665555442 1 1356778899999
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
+.++| ++.+.+ ++|. ....+.+..+++...+..+ +..+.+-+ ...++.-.....++.+||+.+-..
T Consensus 701 ~~~~G--a~~i~l------~Dt~----G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~a 767 (1150)
T 3hbl_A 701 LEREG--FHILAI------KDMA----GLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTA 767 (1150)
T ss_dssp HHHTT--CSEEEE------EETT----CCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred HHHcC--CCeeeE------cCcc----CCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 99998 555443 2221 2355777888887776655 32222210 001111223456889999987221
Q ss_pred -Cccc-cCCCCChhHHHHHHHHcCCCc
Q 020848 270 -EKLL-TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 270 -~~~~-~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++- .++.++.++++.+++..|+.+
T Consensus 768 i~GlG~~~gn~~lE~lv~~L~~~g~~t 794 (1150)
T 3hbl_A 768 VASMSGLTSQPSANSLYYALNGFPRHL 794 (1150)
T ss_dssp CGGGCSBTSCCBHHHHHHHTTTSSCCB
T ss_pred ccccCCCCCCccHHHHHHHHHhcCCCc
Confidence 0121 234467788888888777654
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.87 Score=37.33 Aligned_cols=199 Identities=14% Similarity=0.143 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEec--ccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCC-HHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGA--AWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLE-KHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~--g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~-~e~l~~L~~aGld~v 132 (320)
++..+.+.++.+.+.|++.+.+.- |.. +.....-.+.++.+++. +.++.+.....+ ++.++.+.++|+|.+
T Consensus 14 D~~~~~~~~~~~~~~G~~~i~~~~~dg~~-----~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v 88 (220)
T 2fli_A 14 DYANFASELARIEETDAEYVHIDIMDGQF-----VPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIM 88 (220)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSS-----SSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCC-----CCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEE
Confidence 445666677777778988866542 210 11111113455555533 444433322222 235799999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..+.. ... .+.++.+++.|..+...+ ...+..+. ++.+.. ..+.+-+....| |.
T Consensus 89 ~vh~~~~----------~~~---~~~~~~~~~~g~~i~~~~---~~~t~~e~---~~~~~~---~~d~vl~~~~~~--g~ 144 (220)
T 2fli_A 89 TIHTEST----------RHI---HGALQKIKAAGMKAGVVI---NPGTPATA---LEPLLD---LVDQVLIMTVNP--GF 144 (220)
T ss_dssp EEEGGGC----------SCH---HHHHHHHHHTTSEEEEEE---CTTSCGGG---GGGGTT---TCSEEEEESSCT--TC
T ss_pred EEccCcc----------ccH---HHHHHHHHHcCCcEEEEE---cCCCCHHH---HHHHHh---hCCEEEEEEECC--CC
Confidence 8865331 222 244455566676643332 22232222 111111 145554434433 22
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
.-....+...+++.++.+.......+..+-+.+| +.++.......+|++.++.|..+... .++.+.++.+++
T Consensus 145 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG---I~~~~~~~~~~~Gad~vvvGsai~~~--~d~~~a~~~~~~ 216 (220)
T 2fli_A 145 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG---VDNKTIRACYEAGANVFVAGSYLFKA--SDLVSQVQTLRT 216 (220)
T ss_dssp SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS---CCTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCceEEEECc---CCHHHHHHHHHcCCCEEEEChHHhCC--CCHHHHHHHHHH
Confidence 2111111112222111111111111223333433 22232344667799999998754432 456666666654
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=91.93 E-value=6.7 Score=35.15 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC----C---C----------------chhHHHHHHHHHHhhhcCceEEEeC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----G---R----------------KTNFNQILEYVKDIRDMGMEVCCTL 113 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~----g---e----------------~~~~~~l~~~i~~~k~~~~~i~~~~ 113 (320)
+.|.+.+.++.+++.|++-+-+|.-...+. . . .+..+.+.++.+..++.|+.+.++
T Consensus 42 sle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~st- 120 (385)
T 1vli_A 42 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLST- 120 (385)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECB-
T ss_pred cHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEc-
Confidence 789999999999999999998875422220 0 0 012344555555566778886554
Q ss_pred CCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC-CCHHHHHHHHHHHh
Q 020848 114 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG-EAEEDRVGLLHTLA 192 (320)
Q Consensus 114 g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg-et~ed~~~~l~~l~ 192 (320)
.++.+.++.|.+.|++.+.|+--. -.+ +.-++.+.+.|.++ ++-.| -|.+|+...++++.
T Consensus 121 -pfD~~svd~l~~~~vd~~KIgS~~----------~~N----~pLL~~va~~gKPV----iLStGmaTl~Ei~~Ave~i~ 181 (385)
T 1vli_A 121 -VCDEGSADLLQSTSPSAFKIASYE----------INH----LPLLKYVARLNRPM----IFSTAGAEISDVHEAWRTIR 181 (385)
T ss_dssp -CCSHHHHHHHHTTCCSCEEECGGG----------TTC----HHHHHHHHTTCSCE----EEECTTCCHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHhcCCCEEEECccc----------ccC----HHHHHHHHhcCCeE----EEECCCCCHHHHHHHHHHHH
Confidence 478899999988888888775200 012 34466666667664 33232 38999999999999
Q ss_pred cCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceE
Q 020848 193 TLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSI 266 (320)
Q Consensus 193 ~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~ 266 (320)
..| ...+.+.. -+.+ + |.+..+--++.+..++..+|...+-.+. -..+ ......++..||+-+
T Consensus 182 ~~G--n~~iiLlh--c~s~---Y--Ptp~~~~nL~aI~~Lk~~f~~lpVG~Sd--Ht~G~~~~~~AAvAlGA~iI 245 (385)
T 1vli_A 182 AEG--NNQIAIMH--CVAK---Y--PAPPEYSNLSVIPMLAAAFPEAVIGFSD--HSEHPTEAPCAAVRLGAKLI 245 (385)
T ss_dssp TTT--CCCEEEEE--ECSS---S--SCCGGGCCTTHHHHHHHHSTTSEEEEEE--CCSSSSHHHHHHHHTTCSEE
T ss_pred HCC--CCcEEEEe--ccCC---C--CCChhhcCHHHHHHHHHHcCCCCEEeCC--CCCCchHHHHHHHHcCCCEE
Confidence 887 33444432 1111 1 1111111244455566666433232221 0122 345567788899955
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=2.6 Score=36.83 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
+.+++.+++.++.+.+.|+.-|-+++-.+-++.++ ..++.+...|+.+++ .++.+++ .....+.++.-.++|.
T Consensus 29 ~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpiSI--DT~~~~Va~aAl~aGa 106 (314)
T 2vef_A 29 FFALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVLISI--DTWKSQVAEAALAAGA 106 (314)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCEEEE--ECSCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCceEEE--eCCCHHHHHHHHHcCC
Confidence 36899999999999999999888877332222211 345677788888874 3665543 3466777777777787
Q ss_pred Ceec
Q 020848 130 TAYN 133 (320)
Q Consensus 130 d~v~ 133 (320)
+-|+
T Consensus 107 ~iIN 110 (314)
T 2vef_A 107 DLVN 110 (314)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7665
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.25 E-value=7 Score=34.04 Aligned_cols=231 Identities=17% Similarity=0.188 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-CCCc-hhHHHHHHHHHHhhh-cCceEEEeCCC---C--C-HHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRD-MGMEVCCTLGM---L--E-KHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-~ge~-~~~~~l~~~i~~~k~-~~~~i~~~~g~---l--~-~e~l~~L~~ 126 (320)
+++|||.+.+....+.|..-+++-. +.+ .|.| ...+.+.+++..+++ .++-+..|.|- . + ++.+.-+.+
T Consensus 29 vTpeEia~~A~~~~~AGAaivHlHv--Rdp~dG~ps~d~~~y~e~i~~IR~~~d~iI~~TTgg~~~~~~~~eeR~~~~~~ 106 (314)
T 3lot_A 29 VTPDQIVEEAVKAAEAGAGMVHIHA--RDPKDGRPTTDVEVFRYICREIKKQSDVVINVTTGGGGTLGIPVEERAKVVPA 106 (314)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHHHHHHHHHHHCCCEEEECSSTTGGGTCCHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEee--cCCCCCCcCCCHHHHHHHHHHHHhcCCeEEEeCCCCcCCCCCCHHHHHHHHHh
Confidence 8999999999999999998888733 332 2334 344556666666663 46666665542 2 3 344555555
Q ss_pred hccCeeccCcccc------------------HHHH-----hhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHH
Q 020848 127 AGLTAYNHNLDTS------------------REFY-----SKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEED 183 (320)
Q Consensus 127 aGld~v~i~let~------------------~~~~-----~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed 183 (320)
..-+..+++.=|. +..| +.+- ..+++.+.+.++.+.+.|++...-+ + +..+
T Consensus 107 ~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~-~N~~~~i~~~~~~~~e~Gi~pE~e~-f----d~g~ 180 (314)
T 3lot_A 107 LKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVF-RNTFKDLEALSRIFKENDTKPELEC-Y----DIGQ 180 (314)
T ss_dssp HCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEE-CCCHHHHHHHHHHHHHHTCEEEEEE-C----SHHH
T ss_pred cCCceeeecCCCcccccccccccccccccccchhhcccCCCcee-cCCHHHHHHHHHHHHHcCCEEEEEE-E----CHHH
Confidence 5445444332111 1111 1111 2478888888999999998764432 2 4455
Q ss_pred HHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC--CceeecCCcccccChhHHHHHHHc
Q 020848 184 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP--KAMVRLSAGRVRFSMPEQALCFLA 261 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p--~~~i~~~~g~~~~~~~~~~~~~~~ 261 (320)
+.....+++ .|.-.....+ .|+- |-+.. -+.+++.+.-+++.+..+++ +..+.+. +.....-+....++..
T Consensus 181 l~~~~~l~~-~Gll~~p~~~-~~Vl--Gv~~G--~~~~p~~L~~~~~~~~~l~~~~~~~Wsv~-g~Gr~q~p~~~~A~~~ 253 (314)
T 3lot_A 181 IYNTAFMFH-EGYLEPPLRL-QFIH--GILGG--IGTAVEDVLFMKQTADRLIGRENYTWSLV-GAGRFQMPLGTLAVIM 253 (314)
T ss_dssp HHHHHHHHH-TTCSCSSEEE-EEEE--CCBTS--CCCCHHHHHHHHHHHHHHTCGGGEEEEEE-ECGGGHHHHHHHHHHT
T ss_pred HHHHHHHHH-CCCCCCCceE-EEEe--cCCCC--CCCCHHHHHHHHHHhhhccCCCCCeEEEE-ecChhhHHHHHHHHHc
Confidence 555555444 3421111222 2221 22222 24567777777766655555 3222222 1111111334567778
Q ss_pred CCceEee-CCccccCCC-------CChhHHHHHHHHcCCCcCCCCCCc
Q 020848 262 GANSIFT-GEKLLTTPN-------NDFDADQLMFKVLGLTPKAPSFHE 301 (320)
Q Consensus 262 Gan~~~~-~~~~~~~~~-------~~~~~~~~~i~~~G~~p~~~~~~~ 301 (320)
|.|.-+. +|.+....| .-+++.+++++++|+.|...+.-+
T Consensus 254 GGhvRVGlEDnl~~~~G~lA~sNa~lV~~~~~i~~~lGr~vATp~EAR 301 (314)
T 3lot_A 254 GGDVRVGLEDSLYIERGKLAKSNAEQVEKMVRIVKELGKRPATPDEVR 301 (314)
T ss_dssp TCEEEESTTTCSEEETTEECSCHHHHHHHHHHHHHHTTCEECCHHHHH
T ss_pred CCceEEccCcccccCCCCCCCCHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8874332 232222222 237888899999999988764433
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.09 E-value=6.6 Score=33.49 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=119.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhh-c-CceEEEeCCC---CCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD-M-GMEVCCTLGM---LEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~-~-~~~i~~~~g~---l~~e~l~~L~~aGl 129 (320)
+++|||.+.+....+.|..-+++-- +.+.|.| ...+.+.+++..+++ . ++-+..|.|- ..++. ..+.+..-
T Consensus 27 vTpeEia~~A~~~~~AGAaivHlHv--Rd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~R-~~~~~~~P 103 (275)
T 3no5_A 27 ITVSEQVESTQAAFEAGATLVHLHV--RNDDETPTSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNER-GAMLSLRP 103 (275)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEEECE--ECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGGG-GTTGGGCC
T ss_pred CCHHHHHHHHHHHHHccCcEEEEee--cCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHH-hhHhhcCC
Confidence 8999999999999999998888733 3333444 345567777777774 3 6666666653 11222 22223333
Q ss_pred CeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 130 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|..+++.-|.. .-+.+- ..+++...+.++.+.+.|++....+ + +..++.....++++ |.-...+.+ .|+-
T Consensus 104 e~aSl~~gs~N-f~~~v~-~N~~~~~~~~~~~~~e~Gi~pE~e~-f----d~g~l~~~~~l~~~-Gl~~~p~~~-~~vl- 173 (275)
T 3no5_A 104 DMASLATGSVN-FPTRVY-DNPPELVDWLAAEMKTYGIKPEVEA-F----DLSMIFQAAAMQAA-GAIVGPLHI-QFVM- 173 (275)
T ss_dssp SEEEEECSCEE-CSSSEE-CCCHHHHHHHHHHHHHTTCEEEEEE-S----STHHHHHHHHHHHH-TSSCSSCEE-EEEE-
T ss_pred CEEEecCcccc-cccccc-cCCHHHHHHHHHHHHHcCCeeEEEE-E----cHHHHHHHHHHHHC-CCCCCCeeE-EEEe-
Confidence 44443332210 000111 2467888888999999998765442 2 33455555444443 310111222 2222
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEee-CCccccCCC---C----Ch
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT-GEKLLTTPN---N----DF 280 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~-~~~~~~~~~---~----~~ 280 (320)
|-+.. .+.+++.+..++...+.+-++..+.+.+ |+.. -+....++..|.+.-+. +|.+....| + -+
T Consensus 174 -Gv~~g--~~~~~~~l~~~~~~l~~~~~~~~w~v~g~Gr~~--~p~~~~A~~~GGhvRVGlEDnl~~~~G~~A~sNa~lV 248 (275)
T 3no5_A 174 -GIKNA--MPVDREVLEFYVQTLKRLSPDATWTGAGIGRHQ--LTMARWSLELGGHCRTGLEDNVRLDKNTLAPSNAALV 248 (275)
T ss_dssp -CCTTS--CCCCHHHHHHHHHHHHHHCTTCEEEEEECGGGH--HHHHHHHHHHTCEEEESTTTCCBSSSSCBCSCHHHHH
T ss_pred -CCCCC--CCCCHHHHHHHHHHHHhCCCCCeEEEEecCHhh--HHHHHHHHHhCCCeEEcCCcceeCCCCCCCCCHHHHH
Confidence 32222 2356666666655554333443332221 1111 12335567778874332 233322233 1 37
Q ss_pred hHHHHHHHHcCCCcCCCC
Q 020848 281 DADQLMFKVLGLTPKAPS 298 (320)
Q Consensus 281 ~~~~~~i~~~G~~p~~~~ 298 (320)
++.+++++++|+.|...+
T Consensus 249 ~~~~~i~~~~gr~vAtp~ 266 (275)
T 3no5_A 249 RQVAELCEEYGRPVATAA 266 (275)
T ss_dssp HHHHHHHHHTTCCBCCHH
T ss_pred HHHHHHHHHcCCCCCCHH
Confidence 788899999999998653
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=90.95 E-value=2.1 Score=36.08 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC----CCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g----~l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+-= ...| ....+.+.++++..+ ++++..+-. .-..+.++.|.+.|+++|.
T Consensus 72 ~~~M~~Di~~~~~~GadGvV~G~L--t~dg-~iD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~ale~L~~lG~~rIL 146 (256)
T 1twd_A 72 FAAILEDVRTVRELGFPGLVTGVL--DVDG-NVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVL 146 (256)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCB--CTTS-SBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE--CCCC-CcCHHHHHHHHHHhC--CCcEEEECchhccCCHHHHHHHHHHcCCCEEE
Confidence 344555667788899999998642 1123 356677777777665 455433321 1236679999999999987
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHH
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 188 (320)
-+=. ..+..+-+..++.+.+.. . .+.+|.|-|-+.+.+.+++
T Consensus 147 TSG~-----------~~~a~~g~~~L~~Lv~~a-~-~i~Im~GgGv~~~Ni~~l~ 188 (256)
T 1twd_A 147 TSGQ-----------KSDALQGLSKIMELIAHR-D-APIIMAGAGVRAENLHHFL 188 (256)
T ss_dssp ECTT-----------SSSTTTTHHHHHHHHTSS-S-CCEEEEESSCCTTTHHHHH
T ss_pred CCCC-----------CCCHHHHHHHHHHHHHhh-C-CcEEEecCCcCHHHHHHHH
Confidence 5411 111222244455554432 1 6778998887777766654
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=90.91 E-value=6.7 Score=33.22 Aligned_cols=186 Identities=12% Similarity=0.030 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCC-CCCchh-------------HHHHHHHHHHhhhc--CceEEE---eCCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTN-------------FNQILEYVKDIRDM--GMEVCC---TLGM-- 115 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~-~ge~~~-------------~~~l~~~i~~~k~~--~~~i~~---~~g~-- 115 (320)
+.++..+.++.+.+.|++.+.++.....+ ...|.. .....+.++.+++. ++++.. .+..
T Consensus 29 ~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~ 108 (268)
T 1qop_A 29 GIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFN 108 (268)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHH
Confidence 45788888999999999999886421111 111111 34566888888843 555422 1211
Q ss_pred -CCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 116 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 116 -l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
-.++.++.++++|+|.+.+.-.. .++..+.++.+++.|++.. .++....+.+.+........
T Consensus 109 ~g~~~~~~~~~~aGadgii~~d~~-------------~e~~~~~~~~~~~~g~~~i--~l~~p~t~~~~i~~i~~~~~-- 171 (268)
T 1qop_A 109 NGIDAFYARCEQVGVDSVLVADVP-------------VEESAPFRQAALRHNIAPI--FICPPNADDDLLRQVASYGR-- 171 (268)
T ss_dssp TCHHHHHHHHHHHTCCEEEETTCC-------------GGGCHHHHHHHHHTTCEEE--CEECTTCCHHHHHHHHHHCC--
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCC-------------HHHHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHHHhhCC--
Confidence 12688999999999987774222 1333556677888887651 23322334444455444322
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
..+.+....-..|.. .+. .......++..|... +..+-+. .++. ++....++.+||+.++.|..+
T Consensus 172 ----g~v~~~s~~G~tG~~----~~~-~~~~~~~i~~lr~~~-~~pi~vg---gGI~t~e~~~~~~~agAD~vVVGSai 237 (268)
T 1qop_A 172 ----GYTYLLSRSGVTGAE----NRG-ALPLHHLIEKLKEYH-AAPALQG---FGISSPEQVSAAVRAGAAGAISGSAI 237 (268)
T ss_dssp ----SCEEEESSSSCCCSS----SCC---CCHHHHHHHHHTT-CCCEEEE---SSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred ----CcEEEEecCCcCCCc----cCC-CchHHHHHHHHHhcc-CCcEEEE---CCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 122222221111221 111 112223344444443 2222222 2333 443345588999999999744
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=90.83 E-value=1.5 Score=36.64 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
..+.++.+.+.|++.+.+..-.....+.+. -.++++.++ ..++++..+.|..+.+.++.+.++|+|.|.++-..
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~----~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~ 111 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTKSGY----DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAA 111 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCSSCC----CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCSHHH
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCCCcc----cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehhhHH
Confidence 344556666799999998653222112222 245666766 45888889999999999999999999999987533
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=90.55 E-value=10 Score=35.86 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCH-----------HHHHHHHH
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIELKK 126 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~-----------e~l~~L~~ 126 (320)
.+.++.++.+.+.|++.+++..-+-...+ +.......+.+++++ ...+++.+-.|..+. +.++++.+
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~-~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~ 358 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDC-PLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 358 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CC-CGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccc-cCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHH
Confidence 47777888888899999887532111111 223334567777776 457777777777654 77999999
Q ss_pred hccCeeccCccccH---HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE------------------------------
Q 020848 127 AGLTAYNHNLDTSR---EFYSKIITTRSYDERLETLKHVREAGINVCSGG------------------------------ 173 (320)
Q Consensus 127 aGld~v~i~let~~---~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~------------------------------ 173 (320)
+|+|.|.++-.... +.++.-....+.+-+.+..+..-+..+-+.++.
T Consensus 359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (555)
T 1jvn_A 359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCW 438 (555)
T ss_dssp HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEE
T ss_pred cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCccee
Confidence 99999998865542 222221111233222322222211112233332
Q ss_pred --EEEeCCC---HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccc
Q 020848 174 --IIGLGEA---EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV 248 (320)
Q Consensus 174 --i~Glget---~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~ 248 (320)
++-.|.. .-+..+.++.+.++| ++.+-+... -..|+. ..++.+. ++.+. ...+-. +-.++|-.
T Consensus 439 ~~v~~~Gw~~~~~~~~~e~a~~~~~~G--a~~il~t~~-~~dG~~----~G~d~~l-i~~l~---~~~~iP-VIasGGi~ 506 (555)
T 1jvn_A 439 YQCTIKGGRESRDLGVWELTRACEALG--AGEILLNCI-DKDGSN----SGYDLEL-IEHVK---DAVKIP-VIASSGAG 506 (555)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEECCG-GGTTTC----SCCCHHH-HHHHH---HHCSSC-EEECSCCC
T ss_pred EEEEEecCccCCCCCHHHHHHHHHHcC--CCEEEEeCC-CCCCCC----CCCCHHH-HHHHH---HhCCcc-EEEECCCC
Confidence 1111221 123567788888888 555533221 122432 2234332 33222 222212 22233222
Q ss_pred ccChhHHHHHHH-cCCceEeeCCccccCCCCChhHHHHHHHHcCCCcC
Q 020848 249 RFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 249 ~~~~~~~~~~~~-~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~ 295 (320)
+ .+.-...+. .|++.++.|. ....+..+..+..+.+++.|..+.
T Consensus 507 s--~~d~~~~~~~~G~~gvivg~-a~~~~~~~~~e~~~~l~~~gi~~r 551 (555)
T 1jvn_A 507 V--PEHFEEAFLKTRADACLGAG-MFHRGEFTVNDVKEYLLEHGLKVR 551 (555)
T ss_dssp S--HHHHHHHHHHSCCSEEEESH-HHHTTSCCHHHHHHHHHHTTCCCC
T ss_pred C--HHHHHHHHHhcCChHHHHHH-HHHcCCCCHHHHHHHHHHCCCccc
Confidence 2 222234444 6999999987 444556789999999999997543
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=90.49 E-value=7.7 Score=33.25 Aligned_cols=181 Identities=14% Similarity=0.188 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeC----CCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL----GMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~----g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++++.+.|+..||+. |.+.+...+ .++..++.+.+-. |..+ ..+.+...+.
T Consensus 71 ~T~~dI~~lc~eA~~~g~aaVCV~---------P~~V~~a~~---~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~ 138 (288)
T 3oa3_A 71 ATGSQIDVLCAEAKEYGFATVCVR---------PDYVSRAVQ---YLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQN 138 (288)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHHH---HTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEC---------HHHHHHHHH---HcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 688999999999999999999884 334444433 3344566654333 3222 2345556677
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.|.|.+-++-. .+ ...+|+.+.+-|+..++.--...+.+|+-. --+++++....+...+.| .+.|.-..
T Consensus 139 GAdEIDmVINig-----~l-k~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaG--ADfVKTST- 209 (288)
T 3oa3_A 139 GASELDMVMNYP-----WL-SEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAG--ADYVKTST- 209 (288)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECCC-
T ss_pred CCCEEEEEeehh-----hh-cCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcC--CCEEEcCC-
Confidence 999887655331 11 135788888888877764212224445533 247888888888999998 66665532
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
-+. ....+.++...+.+..+..-+...+..++|--. .+.....+.+||+++
T Consensus 210 ------Gf~-~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt--~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 210 ------GFN-GPGASIENVSLMSAVCDSLQSETRVKASGGIRT--IEDCVKMVRAGAERL 260 (288)
T ss_dssp ------SSS-SCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCS--HHHHHHHHHTTCSEE
T ss_pred ------CCC-CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHcCCcee
Confidence 221 134556664444443333234555666655322 234456788999987
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=1.1 Score=39.55 Aligned_cols=80 Identities=13% Similarity=0.014 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~ 133 (320)
.+.++..+.++.+.+.|+..+.+.++.......+.....-.+.++.++ ..++++..+.|..+.+.++++.+.| +|.|.
T Consensus 226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence 568888899999989999999987653210000100011234555565 3478887777777899999999998 89988
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 306 iG 307 (338)
T 1z41_A 306 IG 307 (338)
T ss_dssp EC
T ss_pred ec
Confidence 86
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=1.4 Score=36.67 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+|+++.+.. ..-..++|+=-. +.-+| -....+.+.+.++.+++.|++++.-.. -+.++++.-++.|.++
T Consensus 76 t~emi~ia~~---~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GA~~ 151 (243)
T 1m5w_A 76 TEEMLAIAVE---TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVGAPF 151 (243)
T ss_dssp SHHHHHHHHH---HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHH---cCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCE
Confidence 3556655543 334578886110 00001 123678899999999999998754433 4689999999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHH
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 187 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 187 (320)
|-+.-..+-+.+........++.+.++.+.+++.|+.++ .|+|-+.+.+..+
T Consensus 152 IELhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn----AGHgL~y~Nv~~i 203 (243)
T 1m5w_A 152 IEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVN----AGHGLTYHNVKAI 203 (243)
T ss_dssp EEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEE----EESSCCTTTHHHH
T ss_pred EEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHHHH
Confidence 887654431111111111246667777788888887764 4576665554443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=90.03 E-value=5.1 Score=33.36 Aligned_cols=95 Identities=16% Similarity=0.110 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHH
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 141 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~ 141 (320)
+.++.+.+.|+..|.+.+..+.-...... ++.+++++ ..++++..+.|..+.+.+.++.++|++.+.++= .
T Consensus 155 e~~~~~~~~G~~~i~~~~~~~~g~~~g~~----~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGs----a 226 (253)
T 1thf_D 155 DWVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAAS----V 226 (253)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTSCSCCC----HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESH----H
T ss_pred HHHHHHHHCCCCEEEEEeccCCCCCCCCC----HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHH----H
Confidence 33444556899988886432211111112 34555555 347888888888888999999999999988761 2
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeee
Q 020848 142 FYSKIITTRSYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 142 ~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
++. ...+++ ++++.+++.|+.+..
T Consensus 227 l~~---~~~~~~---~~~~~l~~~g~~~~~ 250 (253)
T 1thf_D 227 FHF---REIDVR---ELKEYLKKHGVNVRL 250 (253)
T ss_dssp HHT---TCSCHH---HHHHHHHHTTCCCCC
T ss_pred HHc---CCCCHH---HHHHHHHHcCCcccc
Confidence 221 122554 444556777876643
|
| >3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.81 E-value=9.4 Score=33.21 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-CCCc-hhHHHHHHHHHHhhhc--CceEEEeCC-----------C-----
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRK-TNFNQILEYVKDIRDM--GMEVCCTLG-----------M----- 115 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-~ge~-~~~~~l~~~i~~~k~~--~~~i~~~~g-----------~----- 115 (320)
.++|||.+.+....+.|..-+.+-. +.+ .|.| ...+.+.+++..+++. ++-+..|.| .
T Consensus 45 vTpeEIa~~A~~a~~AGAaivHlHv--Rd~~~G~ps~d~~~y~e~~~~IR~~~~d~ii~~TTg~gg~~~g~~~~p~~~~~ 122 (316)
T 3c6c_A 45 ITPAQIADACVEAAKAGASVAHIHV--RDPKTGGGSRDPVLFKEVVDRVRSSGTDIVLNLTCGLGAFLLPDPEDESKALP 122 (316)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEECE--ECTTTCCEECCHHHHHHHHHHHHTTTCCCEEEEECCCSEEECEETTEEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEee--cCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCccccccCcccCcccccc
Confidence 8999999999999999998888743 332 2334 4556677777777743 666666555 1
Q ss_pred -----CCHHHHHHHHHhccCeeccCccccH---HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHH
Q 020848 116 -----LEKHQAIELKKAGLTAYNHNLDTSR---EFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 187 (320)
Q Consensus 116 -----l~~e~l~~L~~aGld~v~i~let~~---~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 187 (320)
-.++.+.-+.+..-|..+++.=+.. ..-+.+ =..+++.+.+.++.+++.|++..+.+ + +..++...
T Consensus 123 ~~~l~~~eeR~~~~~~~~Pe~aSl~~Gs~Nf~~~~~~~v-~~n~~~~i~~~~~~~~e~Gv~pE~e~-f----d~g~l~~~ 196 (316)
T 3c6c_A 123 ESDVVPVAERVKHLEDCLPEIASLDITTGNQVEGKLEFV-YLNTTRTLRAMARRFQELGIKPELEV-F----SPGDILFG 196 (316)
T ss_dssp TCEECCHHHHTHHHHHHCCSEEEEECCCEEEEETTEEEE-ECCCHHHHHHHHHHHHHHTCEEEEEE-S----SHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCCeEEeccccccccCCCCcee-ecCCHHHHHHHHHHHHHcCCeEEEEE-E----CHHHHHHH
Confidence 1344455554555565554432221 000001 13578888889999999998765442 2 34565554
Q ss_pred HHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecC-CcccccChhHHHHHHHcCCce
Q 020848 188 LHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS-AGRVRFSMPEQALCFLAGANS 265 (320)
Q Consensus 188 l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~-~g~~~~~~~~~~~~~~~Gan~ 265 (320)
..+++ .|. +..=.+..|.- |-+.. -+.+++.+..++. .+|. ..+.+. -|+..+ +....++..|.+.
T Consensus 197 ~~l~~-~Gl-l~~p~~~~~vl--Gv~~g--~p~~p~~L~~~~~----~lp~~~~wsv~g~Gr~q~--p~~~~A~~~GGhv 264 (316)
T 3c6c_A 197 KQLIE-EGL-IDGVPLFQMVL--GVLWG--APASTETMIYQRN----LIPANAQWAAFGIGRDQM--PMMAQAALLGGNV 264 (316)
T ss_dssp HHHHH-TTC-SCSSCEEEEEC--SCTTS--CCSCHHHHHHHHT----TSCTTSEEEEECCGGGHH--HHHHHHHHHTCBE
T ss_pred HHHHH-cCC-CCCCceEEEEE--ecCCC--CCCCHHHHHHHHH----hcCCCCeEEEEecCcchH--HHHHHHHHcCCCe
Confidence 44443 332 11111222211 32222 2356666555443 2443 222221 111111 2334567778775
Q ss_pred Eee-CCccccCC------CCChhHHHHHHHHcCCCcCCCC
Q 020848 266 IFT-GEKLLTTP------NNDFDADQLMFKVLGLTPKAPS 298 (320)
Q Consensus 266 ~~~-~~~~~~~~------~~~~~~~~~~i~~~G~~p~~~~ 298 (320)
-+. +|.+.... ..-+++.+++++++|+.|...+
T Consensus 265 RVGlEDnl~~~~G~~AsNa~lV~~a~~i~~~lGr~vATp~ 304 (316)
T 3c6c_A 265 RVGLEDNLYLSRGVFATNGQLVERARTVIEHLGMSVATPD 304 (316)
T ss_dssp EESTTTCCEEETTEECCHHHHHHHHHHHHHHTTCEECCHH
T ss_pred EEccccccCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCHH
Confidence 332 23221111 2237788889999999887654
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.81 E-value=2.3 Score=37.38 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC------------CC---CCchhHHHHHHHHHHhhh-c--CceEEEeCCCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------TI---GRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~------------~~---ge~~~~~~l~~~i~~~k~-~--~~~i~~~~g~l~ 117 (320)
++.+++.+.++.+.+.|++.|.+.+++.. .+ | +...+.-++.++.+++ . ++++..+.|..+
T Consensus 222 ~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g-~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~ 300 (336)
T 1f76_A 222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSG-RPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS 300 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEE-GGGHHHHHHHHHHHHHHHTTSSCEEEESSCCS
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCC-chhHHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 56778888899999999999988654211 11 2 1123445567777763 4 688888999999
Q ss_pred HHHHHHHHHhccCeeccC
Q 020848 118 KHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.+..++|.|.|.++
T Consensus 301 ~~da~~~l~~GAd~V~ig 318 (336)
T 1f76_A 301 VIAAREKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHCCCCEEEee
Confidence 999998889999999886
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=2 Score=39.30 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----chhHHHHHHHHHHhhh------cCceEEEeCCCCCHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD------MGMEVCCTLGMLEKHQAIELK 125 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge----~~~~~~l~~~i~~~k~------~~~~i~~~~g~l~~e~l~~L~ 125 (320)
.+.+++++.++.+.+.|++-|-++|-.+-++.+ ...++++...|+.+++ .++.++ ......+.+++-.
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpIS--IDT~~~~VaeaAL 286 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVS--IDTRKLEVMQKIL 286 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEE--EECCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEE--EeCCCHHHHHHHH
Confidence 467899999999999999988887633333221 2345667777888775 144443 3456778888877
Q ss_pred H--hccCe
Q 020848 126 K--AGLTA 131 (320)
Q Consensus 126 ~--aGld~ 131 (320)
+ +|.+-
T Consensus 287 ~~~aGa~i 294 (442)
T 3mcm_A 287 AKHHDIIW 294 (442)
T ss_dssp HHHGGGCC
T ss_pred hhCCCCCE
Confidence 7 88876
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=89.59 E-value=4.9 Score=33.23 Aligned_cols=199 Identities=11% Similarity=0.092 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCC-HHHHHHHHHhccCe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE-KHQAIELKKAGLTA 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~-~e~l~~L~~aGld~ 131 (320)
+.-.+.++++.+.+.|++.+++ -.|...+. ..+ =.+.++.+++. +..+.++.-..+ .+.++.+.+ .|.
T Consensus 16 D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn---~t~--G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~ 88 (227)
T 1tqx_A 16 NISKLAEETQRMESLGAEWIHLDVMDMHFVPN---LSF--GPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQ 88 (227)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC---BCC--CHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSE
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcc---hhc--CHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCE
Confidence 3445566666667788886554 33321111 111 01444455532 233222211111 233444544 777
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++. ..+..+.++..+.+++.|.++++.+ ..+ |+ .+.++.+.+++ .++.|-++...| |
T Consensus 89 itvH~ea~---------~~~~~~~i~~~~~i~~~G~k~gval--np~-tp---~~~~~~~l~~g-~~D~VlvmsV~p--G 150 (227)
T 1tqx_A 89 LTFHFEAL---------NEDTERCIQLAKEIRDNNLWCGISI--KPK-TD---VQKLVPILDTN-LINTVLVMTVEP--G 150 (227)
T ss_dssp EEEEGGGG---------TTCHHHHHHHHHHHHTTTCEEEEEE--CTT-SC---GGGGHHHHTTT-CCSEEEEESSCT--T
T ss_pred EEEeecCC---------ccCHHHHHHHHHHHHHcCCeEEEEe--CCC-Cc---HHHHHHHhhcC-CcCEEEEeeecc--C
Confidence 87776653 1123333332228888998876654 223 32 22233333432 157777777665 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
..-+...+ ..+..+...|.+.++..+.+.+ ++..+.......+|||.++.|..+.. ..++.+.++.+++
T Consensus 151 f~gq~f~~----~~l~ki~~lr~~~~~~~I~VdG---GI~~~ti~~~~~aGAd~~V~GsaIf~--~~d~~~~i~~l~~ 219 (227)
T 1tqx_A 151 FGGQSFMH----DMMGKVSFLRKKYKNLNIQVDG---GLNIETTEISASHGANIIVAGTSIFN--AEDPKYVIDTMRV 219 (227)
T ss_dssp CSSCCCCG----GGHHHHHHHHHHCTTCEEEEES---SCCHHHHHHHHHHTCCEEEESHHHHT--CSSHHHHHHHHHH
T ss_pred CCCcccch----HHHHHHHHHHHhccCCeEEEEC---CCCHHHHHHHHHcCCCEEEEeHHHhC--CCCHHHHHHHHHH
Confidence 32111111 2233444555555554455544 34455556778899999999964332 2346666655544
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=89.59 E-value=4.2 Score=35.57 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=78.0
Q ss_pred HHHHHHHHHHH-HcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEe-CC--CCCHHHHHHHHHhccCe--
Q 020848 59 DAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGLTA-- 131 (320)
Q Consensus 59 eei~~~~~~~~-~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~-~g--~l~~e~l~~L~~aGld~-- 131 (320)
+++.+.++... +.|++-|.+++-+..+++.+...++..+.++.+. ..++++++. .| ....+.++.-.++|.+.
T Consensus 80 ~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~ 159 (323)
T 4djd_D 80 NEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENL 159 (323)
T ss_dssp TCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCC
Confidence 45777777777 8899999997644455555556677888888887 457776554 22 35577788888887542
Q ss_pred -ec-cCccccHHHHhhhC---------CCCCHHHHHHHHHHHHHcCCe---eeeeEEEE-eCCCHHHHHHHHHHHhc
Q 020848 132 -YN-HNLDTSREFYSKII---------TTRSYDERLETLKHVREAGIN---VCSGGIIG-LGEAEEDRVGLLHTLAT 193 (320)
Q Consensus 132 -v~-i~let~~~~~~~i~---------~~~~~~~~l~~i~~a~~~Gi~---v~~~~i~G-lget~ed~~~~l~~l~~ 193 (320)
|+ ++.+..++..+... ...+.+-..+.++.+.++|++ +-++-.+| +|.+.++-.++++.++.
T Consensus 160 lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 160 LLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp EEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred eEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence 22 22222222222111 012344444445556666762 55555555 35666666665555543
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=89.44 E-value=1.6 Score=36.90 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+|+++.+.. ..-..++|+--. +.-+| -....+.|.+.++.+++.|++++.-.. -+.++++.-++.|.|+
T Consensus 104 t~emi~ial~---~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID-pd~~qI~aA~~~GAd~ 179 (278)
T 3gk0_A 104 TPEMLDIACE---IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID-PDEAQIRAAHETGAPV 179 (278)
T ss_dssp SHHHHHHHHH---HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHH---cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCE
Confidence 4566666544 334578886110 00011 123578899999999999998654332 5688999999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHH
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~ 185 (320)
|.+.-..+.+.+..-.....++.+.++.+.+++.|+.|. .|+|-+.+.+.
T Consensus 180 IELhTG~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~Vn----AGHGL~y~Nv~ 229 (278)
T 3gk0_A 180 IELHTGRYADAHDAAEQQREFERIATGVDAGIALGLKVN----AGHGLHYTNVQ 229 (278)
T ss_dssp EEECCHHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEE----ECTTCCTTTHH
T ss_pred EEEecchhhccCCchhHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 988553331111100011245666777777888887764 45665655554
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=1.1 Score=39.82 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC----CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-c
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT----IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-L 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~----~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-l 129 (320)
.+.++..+.++.+.+.|++.+.+..|.... .+ +. ...++++.+| ..++++..+.|..+.+.++++.+.| +
T Consensus 226 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~---~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~a 301 (340)
T 3gr7_A 226 LTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVY-PG---YQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRA 301 (340)
T ss_dssp CCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCC-TT---TTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCC-cc---ccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCe
Confidence 456788888888888999988886543211 11 11 1234555666 3477787777778889988888888 8
Q ss_pred CeeccC
Q 020848 130 TAYNHN 135 (320)
Q Consensus 130 d~v~i~ 135 (320)
|.|.++
T Consensus 302 D~V~iG 307 (340)
T 3gr7_A 302 DLVFLG 307 (340)
T ss_dssp SEEEEC
T ss_pred eEEEec
Confidence 888886
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=89.04 E-value=6.2 Score=34.32 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEE-eCCC--CCHHHHHHHHHhccC
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCC-TLGM--LEKHQAIELKKAGLT 130 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~-~~g~--l~~e~l~~L~~aGld 130 (320)
+.+++.++...+.|++-|.+++.+..++..+...++..+.++.+++ .++++++ ..|. ...+.++.-.++|.+
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCC
Confidence 6788888888899999999987544444445667778888888874 4777655 3332 667888888888876
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=89.04 E-value=2.7 Score=35.87 Aligned_cols=187 Identities=15% Similarity=0.227 Sum_probs=105.2
Q ss_pred HHHHHHHHHhh-hc-CceEE-----EeCCCCCHHHHHHHHHhccCee-ccC----cccc-HHHHhhhCCCCCHHHHHHHH
Q 020848 93 NQILEYVKDIR-DM-GMEVC-----CTLGMLEKHQAIELKKAGLTAY-NHN----LDTS-REFYSKIITTRSYDERLETL 159 (320)
Q Consensus 93 ~~l~~~i~~~k-~~-~~~i~-----~~~g~l~~e~l~~L~~aGld~v-~i~----let~-~~~~~~i~~~~~~~~~l~~i 159 (320)
+-++++.+++- .. ++++. +.++.-....++.|+++|+..+ +++ +|+. ++.++. .+-.|++..+.|
T Consensus 79 ~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE--~gm~~~~eve~I 156 (286)
T 2p10_A 79 QIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEE--TGMSYAQEVEMI 156 (286)
T ss_dssp HHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHH--TTCCHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceEEECCCcccccchhhhhHhh--cCCCHHHHHHHH
Confidence 45666666554 22 45543 2345567888999999998877 333 3333 333333 356899999999
Q ss_pred HHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHH----HHHHHHHHHHh
Q 020848 160 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE----MIRMIATARIV 235 (320)
Q Consensus 160 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e----~~~~~a~~R~~ 235 (320)
+.+++.|+.+.+ ++ .|.++..++. +++ ++.|.+.+=.-..| ........+.++ ..++...++..
T Consensus 157 ~~A~~~gL~Ti~-~v----~~~eeA~amA----~ag--pDiI~~h~glT~gg-lIG~~~avs~~~~~e~i~~i~~a~~~v 224 (286)
T 2p10_A 157 AEAHKLDLLTTP-YV----FSPEDAVAMA----KAG--ADILVCHMGLTTGG-AIGARSGKSMDDCVSLINECIEAARTI 224 (286)
T ss_dssp HHHHHTTCEECC-EE----CSHHHHHHHH----HHT--CSEEEEECSCC----------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEE-ec----CCHHHHHHHH----HcC--CCEEEECCCCCCCC-cccCCCcccHHHhHHHHHHHHHHHHHh
Confidence 999999986421 12 3667666554 455 66655532110111 111123344544 44445667888
Q ss_pred CCCceeecCCcccccChhHHHHHHHc--CCceEeeCCccccCC-CCChhHHHHHHHHcCCCc
Q 020848 236 MPKAMVRLSAGRVRFSMPEQALCFLA--GANSIFTGEKLLTTP-NNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 236 ~p~~~i~~~~g~~~~~~~~~~~~~~~--Gan~~~~~~~~~~~~-~~~~~~~~~~i~~~G~~p 294 (320)
-|+..+-..+|-+.- ++.....+.. |++.++....+...+ .....+..+.++...+.|
T Consensus 225 npdvivLc~gGpIst-peDv~~~l~~t~G~~G~~gASsier~p~e~ai~~~~~~fk~~~~~~ 285 (286)
T 2p10_A 225 RDDIIILSHGGPIAN-PEDARFILDSCQGCHGFYGASSMERLPAEEAIRSQTLAFKAIRRQP 285 (286)
T ss_dssp CSCCEEEEESTTCCS-HHHHHHHHHHCTTCCEEEESHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCcEEEecCCCCCC-HHHHHHHHhcCCCccEEEeehhhhcCCHHHHHHHHHHHHHhcccCC
Confidence 888654433322322 3334566666 899887765443322 234566667777777776
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=88.67 E-value=12 Score=33.00 Aligned_cols=178 Identities=13% Similarity=0.122 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCC--------C-----CC---------chhHHHHHHHHHHhhhcCceEEEeCC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT--------I-----GR---------KTNFNQILEYVKDIRDMGMEVCCTLG 114 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~--------~-----ge---------~~~~~~l~~~i~~~k~~~~~i~~~~g 114 (320)
+.|.+.+.++.+++.|++-+-+|.-...+ + +. .+..+.+..+.+..++.|+.+.+++
T Consensus 33 s~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~- 111 (349)
T 2wqp_A 33 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTL- 111 (349)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEee-
Confidence 68999999999999999999887321100 0 00 0234556666666668899876654
Q ss_pred CCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC-CCHHHHHHHHHHHhc
Q 020848 115 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG-EAEEDRVGLLHTLAT 193 (320)
Q Consensus 115 ~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg-et~ed~~~~l~~l~~ 193 (320)
++.+.++.|.+.|++.+.|+--. -.+ +.-++.+.+.|.++ ++-.| -|.+|+...++++..
T Consensus 112 -~d~~svd~l~~~~v~~~KI~S~~----------~~n----~~LL~~va~~gkPv----iLstGmat~~Ei~~Ave~i~~ 172 (349)
T 2wqp_A 112 -FSRAAALRLQRMDIPAYKIGSGE----------CNN----YPLIKLVASFGKPI----ILSTGMNSIESIKKSVEIIRE 172 (349)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGG----------TTC----HHHHHHHHTTCSCE----EEECTTCCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCCCEEEECccc----------ccC----HHHHHHHHhcCCeE----EEECCCCCHHHHHHHHHHHHH
Confidence 78999999999999988885200 012 34466666667664 33232 389999999999998
Q ss_pred CCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 194 l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.| . .+.+.. ++.-+ |.+..+--++.+..++..+|+..+-.+.- ..+......++..||+-+
T Consensus 173 ~G--~-~iiLlh-----c~s~Y--p~~~~~~nL~ai~~lk~~f~~lpVg~sdH--t~G~~~~~AAvAlGA~iI 233 (349)
T 2wqp_A 173 AG--V-PYALLH-----CTNIY--PTPYEDVRLGGMNDLSEAFPDAIIGLSDH--TLDNYACLGAVALGGSIL 233 (349)
T ss_dssp HT--C-CEEEEE-----CCCCS--SCCGGGCCTHHHHHHHHHCTTSEEEEECC--SSSSHHHHHHHHHTCCEE
T ss_pred cC--C-CEEEEe-----ccCCC--CCChhhcCHHHHHHHHHHCCCCCEEeCCC--CCcHHHHHHHHHhCCCEE
Confidence 77 3 233322 22111 11111112455666666664332322211 122345567788899955
|
| >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.55 E-value=7.3 Score=36.61 Aligned_cols=139 Identities=13% Similarity=0.173 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcC-----CCEEEEecccCCCC----CCchhHHHHHHHHHHhhhc---C-ceEEEeCCCCCHHHHHH
Q 020848 57 TKDAVMQAAQKAKEAG-----STRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDM---G-MEVCCTLGMLEKHQAIE 123 (320)
Q Consensus 57 s~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~----ge~~~~~~l~~~i~~~k~~---~-~~i~~~~g~l~~e~l~~ 123 (320)
+.+.+++.++.+.+.| +.-|-++|-.+-++ .+...+++++..|+.+++. . ..+.++......+.+++
T Consensus 247 ~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~~vs~eEEl~RvvpvI~~i~~~~~~~~~~vpISIDT~~a~Vaea 326 (545)
T 2bmb_A 247 DIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSIQASEEEEIRRSIPLIKAIRESTELPQDKVILSIDTYRSNVAKE 326 (545)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCCCCCHHHHHHHHHHHHHHHHHCSSSCGGGEEEEEECCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCcHHHHHH
Confidence 8999999999999999 87777876333232 1124466777788887641 1 12233334566777777
Q ss_pred HHHhccCeec-cCcccc-HHHH---hhh--------C-C--CC------CHH----------------------------
Q 020848 124 LKKAGLTAYN-HNLDTS-REFY---SKI--------I-T--TR------SYD---------------------------- 153 (320)
Q Consensus 124 L~~aGld~v~-i~let~-~~~~---~~i--------~-~--~~------~~~---------------------------- 153 (320)
-.++|.+-|+ ++-... ++.+ ... + + .. .|+
T Consensus 327 Al~aGadIINDVsg~~~d~~m~~vva~~~~~~vVlmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 406 (545)
T 2bmb_A 327 AIKVGVDIINDISGGLFDSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKT 406 (545)
T ss_dssp HHHTTCCEEEETTTTSSCTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHC
T ss_pred HHHcCCCEEEeCCCCcCChHHHHHHHHhCCCeEEEECCCCCCCCccccccccccccccccchhccccccccccccccccc
Confidence 7777777665 332211 2111 111 0 0 00 111
Q ss_pred --------HHHHHHHHHHHcCCe---eeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 154 --------ERLETLKHVREAGIN---VCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 154 --------~~l~~i~~a~~~Gi~---v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
...+.++.|.++|++ +-++--+|++.+.++-.++++.+..+.
T Consensus 407 ~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~ 459 (545)
T 2bmb_A 407 VLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILK 459 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCcccChHHHHHHHHHHHHHH
Confidence 123467777888985 777777777778877777776666653
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=88.47 E-value=7.5 Score=31.95 Aligned_cols=193 Identities=16% Similarity=0.207 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe--cccCCCCCCchhHHHHHHHHHHhhhc-Cc----eEEEeCCCCCHHHHHHHHHhccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMG--AAWRDTIGRKTNFNQILEYVKDIRDM-GM----EVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~--~g~~~~~ge~~~~~~l~~~i~~~k~~-~~----~i~~~~g~l~~e~l~~L~~aGld 130 (320)
...+.+.++.+.+.|++.+.+. .|... |.. ..-.+.++.+++. .. .+.+++ ..+.++.+.++|+|
T Consensus 18 ~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv----~~~-~~~~~~~~~lr~~~~~~~~v~lmv~d---~~~~i~~~~~agad 89 (228)
T 1h1y_A 18 FANLAAEADRMVRLGADWLHMDIMDGHFV----PNL-TIGAPVIQSLRKHTKAYLDCHLMVTN---PSDYVEPLAKAGAS 89 (228)
T ss_dssp GGGHHHHHHHHHHTTCSEEEEEEEBSSSS----SCB-CBCHHHHHHHHTTCCSEEEEEEESSC---GGGGHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecCCcC----cch-hhCHHHHHHHHhhcCCcEEEEEEecC---HHHHHHHHHHcCCC
Confidence 4556666777777899877663 22111 100 1112444555532 22 233332 24568888999999
Q ss_pred eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC--CCCCCeeeeeeeee
Q 020848 131 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL--PTHPESVPINALLA 208 (320)
Q Consensus 131 ~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l--~~~~~~v~~~~~~p 208 (320)
.+.+..+..+ ..+ .+.++.+++.|+.+. +.+. ..+..+. ++.+.+. + ++.+.+....|
T Consensus 90 ~v~vH~~~~~---------~~~---~~~~~~i~~~g~~ig--v~~~-p~t~~e~---~~~~~~~~~~--~d~vl~~sv~p 149 (228)
T 1h1y_A 90 GFTFHIEVSR---------DNW---QELIQSIKAKGMRPG--VSLR-PGTPVEE---VFPLVEAENP--VELVLVMTVEP 149 (228)
T ss_dssp EEEEEGGGCT---------TTH---HHHHHHHHHTTCEEE--EEEC-TTSCGGG---GHHHHHSSSC--CSEEEEESSCT
T ss_pred EEEECCCCcc---------cHH---HHHHHHHHHcCCCEE--EEEe-CCCCHHH---HHHHHhcCCC--CCEEEEEeecC
Confidence 9988664431 111 345566677787765 2222 2333222 2222332 3 56777766655
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
|+.-....+ ..+..++..|.+.++..+.+.+| +.++.-.....+|++.++.|..+... .++.+.++.++
T Consensus 150 --g~~g~~~~~----~~l~~i~~~~~~~~~~pi~v~GG---I~~~ni~~~~~aGaD~vvvGsai~~~--~d~~~~~~~l~ 218 (228)
T 1h1y_A 150 --GFGGQKFMP----EMMEKVRALRKKYPSLDIEVDGG---LGPSTIDVAASAGANCIVAGSSIFGA--AEPGEVISALR 218 (228)
T ss_dssp --TCSSCCCCG----GGHHHHHHHHHHCTTSEEEEESS---CSTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHH
T ss_pred --CCCcccCCH----HHHHHHHHHHHhcCCCCEEEECC---cCHHHHHHHHHcCCCEEEECHHHHCC--CCHHHHHHHHH
Confidence 322111122 12333444555554434444433 33333345667799999998744432 24555555554
Q ss_pred H
Q 020848 289 V 289 (320)
Q Consensus 289 ~ 289 (320)
+
T Consensus 219 ~ 219 (228)
T 1h1y_A 219 K 219 (228)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=88.26 E-value=7.6 Score=32.23 Aligned_cols=92 Identities=21% Similarity=0.172 Sum_probs=56.7
Q ss_pred HHHHHHHcCCCEEEEecccCC-CCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHH
Q 020848 64 AAQKAKEAGSTRFCMGAAWRD-TIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 141 (320)
Q Consensus 64 ~~~~~~~~g~~~i~l~~g~~~-~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~ 141 (320)
.++.+.+.|+..|.+.+-... ... ... ++.++.++ ..++++....|..+.+.++++.++|++.+.++= .
T Consensus 157 ~~~~~~~~G~~~i~~~~~~~~g~~~-g~~----~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgs----a 227 (252)
T 1ka9_F 157 WAVKGVELGAGEILLTSMDRDGTKE-GYD----LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAAS----V 227 (252)
T ss_dssp HHHHHHHHTCCEEEEEETTTTTTCS-CCC----HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH----H
T ss_pred HHHHHHHcCCCEEEEecccCCCCcC-CCC----HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHH----H
Confidence 344455579988887642211 111 112 44555555 347888888898889999999999999988761 1
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 142 FYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 142 ~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
+ +....++.+. .+.+.+.|+.+.
T Consensus 228 l---~~~~~~~~~~---~~~l~~~~~~~~ 250 (252)
T 1ka9_F 228 F---HFGEIPIPKL---KRYLAEKGVHVR 250 (252)
T ss_dssp H---HTTSSCHHHH---HHHHHHTTCCBC
T ss_pred H---HcCCCCHHHH---HHHHHHCCCCcC
Confidence 1 1223366444 445667787654
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=2.4 Score=37.67 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v 132 (320)
.+.++..+.++.+.+.|+..+.+..|..... ..+..-..-.++++.++ ..++++..+.|..+.+.++++.+.| +|.|
T Consensus 236 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 236 WSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 5678888888888889998888874322110 00000011234555665 3477777776777888888888888 8888
Q ss_pred ccC
Q 020848 133 NHN 135 (320)
Q Consensus 133 ~i~ 135 (320)
.++
T Consensus 316 ~iG 318 (349)
T 3hgj_A 316 LLG 318 (349)
T ss_dssp EES
T ss_pred Eec
Confidence 876
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=87.33 E-value=2.4 Score=36.59 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMG 79 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~ 79 (320)
+++++.+.++.+.+.|++.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~l~ 175 (295)
T 1ydn_A 153 TPQAVASVTEQLFSLGCHEVSLG 175 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEec
Confidence 45555555555555555555553
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.05 E-value=7.9 Score=33.44 Aligned_cols=79 Identities=9% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c-Cc--eEEEeCCC-CCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GM--EVCCTLGM-LEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~-~~--~i~~~~g~-l~~e~l~~L~~aGld 130 (320)
.+++++++.++.+.+.|++.+.+... .|- ..-..+.++++.+++ . ++ .+..+|+. +.......-.++|++
T Consensus 156 ~~~~~~~~~~~~~~~~G~d~i~l~DT----~G~-~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~ 230 (302)
T 2ftp_A 156 VDPRQVAWVARELQQMGCYEVSLGDT----IGV-GTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIA 230 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEES----SSC-CCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC----CCC-cCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCC
Confidence 45667777776666677777666421 111 122344445555542 2 22 23443333 334444444466777
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++-+.
T Consensus 231 ~vd~tv~Gl 239 (302)
T 2ftp_A 231 VFDSSVAGL 239 (302)
T ss_dssp EEEEBGGGC
T ss_pred EEEeccccc
Confidence 777666554
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=86.98 E-value=3.4 Score=36.95 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC------------CCC--CchhHHHHHHHHHHhh-hc--CceEEEeCCCCCH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------TIG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGMLEK 118 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~------------~~g--e~~~~~~l~~~i~~~k-~~--~~~i~~~~g~l~~ 118 (320)
++.+++.+.++.+.+.|++.|.+.+.... .+| .+...+.-++.++.++ .. .+++..+.|..+.
T Consensus 231 ~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~ 310 (367)
T 3zwt_A 231 LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSG 310 (367)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCH
Confidence 56788999999999999999987543210 111 0223455567788877 34 6888899999999
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++.++|.|.|.++
T Consensus 311 ~da~~~l~~GAd~V~vg 327 (367)
T 3zwt_A 311 QDALEKIRAGASLVQLY 327 (367)
T ss_dssp HHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99888888999999886
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=86.75 E-value=10 Score=31.11 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=55.5
Q ss_pred HHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHH
Q 020848 64 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 142 (320)
Q Consensus 64 ~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~ 142 (320)
.++.+.+.|+..+.+.+-.....+.... .+.++.++ ..++++..+.|..+.+.+.++.++|++.+.++= .+
T Consensus 159 ~~~~~~~~G~d~i~~~~~~~~g~~~~~~----~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgs----al 230 (253)
T 1h5y_A 159 WAKEVEELGAGEILLTSIDRDGTGLGYD----VELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAAS----LF 230 (253)
T ss_dssp HHHHHHHHTCSEEEEEETTTTTTCSCCC----HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESH----HH
T ss_pred HHHHHHhCCCCEEEEecccCCCCcCcCC----HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHH----HH
Confidence 3455566799888876432211111122 23344444 246788888888888899999999999988862 22
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 143 YSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 143 ~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
+. ...+++ +..+.+.+.|+.+.
T Consensus 231 ~~---~~~~~~---~~~~~l~~~g~~~~ 252 (253)
T 1h5y_A 231 HF---RVLSIA---QVKRYLKERGVEVR 252 (253)
T ss_dssp HT---TSSCHH---HHHHHHHHTTCBCC
T ss_pred Hc---CCCCHH---HHHHHHHHcCCCCC
Confidence 22 233443 44455667787653
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=86.62 E-value=5.8 Score=34.20 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHH
Q 020848 92 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAIEL 124 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L 124 (320)
.+++.++++.+.+.|.. +.-|.|..++..+.+|
T Consensus 149 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l 184 (293)
T 3ewb_X 149 RAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQL 184 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHH
Confidence 34555555555544433 2334555555554444
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=86.58 E-value=2.9 Score=35.04 Aligned_cols=196 Identities=11% Similarity=0.148 Sum_probs=102.5
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHH
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 141 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~ 141 (320)
+.++.+.+.|++++++..-+....+.+.. .++++.+. +..+++.+-.|..+.+.++.+.++|+++|.++-...
T Consensus 35 ~~a~~~~~~gad~lhvvDld~a~~~~~~~----~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~-- 108 (243)
T 4gj1_A 35 KKFKEYEKAGAKELHLVDLTGAKDPSKRQ----FALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI-- 108 (243)
T ss_dssp HHHHHHHHHTCCEEEEEEHHHHHCGGGCC----HHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT--
T ss_pred HHHHHHHHCCCCEEEEEecCcccccchhH----HHHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccccc--
Confidence 34566777899999886421111222323 34444444 567889999999999999999999999999875443
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE------EEe-C---CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 142 FYSKIITTRSYDERLETLKHVREAGINVCSGGI------IGL-G---EAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 142 ~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i------~Gl-g---et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
.+++-+.+..+..-..-+-+.++.. +-. + .+.-++.+.++.+.+++ +..+-+.. +-..|
T Consensus 109 --------~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~eil~t~-Id~DG 177 (243)
T 4gj1_A 109 --------KDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKG--LKHILCTD-ISKDG 177 (243)
T ss_dssp --------TCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTT--CCEEEEEE-TTC--
T ss_pred --------cCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcC--CcEEEeee-ecccc
Confidence 2232222322222211122333332 111 2 12224567777777887 44443322 23346
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
|. ..++.+. ++ ..+...++..+-+++|-.++ .+...+..+++.+..|..+ ..+.-+.+|.++.+
T Consensus 178 t~----~G~d~~l-~~---~l~~~~~~ipviasGGv~~~---~Dl~~l~~~~~gvivg~Al-~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 178 TM----QGVNVRL-YK---LIHEIFPNICIQASGGVASL---KDLENLKGICSGVIVGKAL-LDGVFSVEEGIRCL 241 (243)
T ss_dssp -------CCCHHH-HH---HHHHHCTTSEEEEESCCCSH---HHHHHTTTTCSEEEECHHH-HTTSSCHHHHHHHH
T ss_pred cc----cCCCHHH-HH---HHHHhcCCCCEEEEcCCCCH---HHHHHHHccCchhehHHHH-HCCCCCHHHHHHHh
Confidence 54 2344443 23 23334555444455543332 2234456677777777633 34456777766654
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=5 Score=34.91 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-C----CchhHHHHHHHHHHhhhc-C--ceE--EEeC----CCCC-HHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-G----RKTNFNQILEYVKDIRDM-G--MEV--CCTL----GMLE-KHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-g----e~~~~~~l~~~i~~~k~~-~--~~i--~~~~----g~l~-~e~ 120 (320)
.+.+++...+..+.+.|++.|+...|+.+.. | .|..+++-.++++.+++. | +.+ ...+ ..-+ +..
T Consensus 83 ~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d 162 (310)
T 3apt_A 83 QSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEAD 162 (310)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHH
Confidence 6889999999988999999998877766543 3 122244555666666543 2 332 2222 1122 223
Q ss_pred HHHH---HHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 121 AIEL---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 121 l~~L---~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
++.| .++|.|.+--- .-.+.+.+.+.++.+++.|+.
T Consensus 163 ~~~Lk~Kv~aGAdf~iTQ------------~ffD~~~~~~f~~~~r~~Gi~ 201 (310)
T 3apt_A 163 LRHFKAKVEAGLDFAITQ------------LFFNNAHYFGFLERARRAGIG 201 (310)
T ss_dssp HHHHHHHHHHHCSEEEEC------------CCSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCEEEec------------ccCCHHHHHHHHHHHHHcCCC
Confidence 4444 35677643221 123555666666777777754
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=86.36 E-value=13 Score=30.70 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=77.7
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCe
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 200 (320)
+..++++|++.+.++..- |...+.+.-+.++.+.+.|+.+ ++-.|++.+. +.+..++ +.
T Consensus 78 ~~~l~~~Ga~~Vllghse---------RR~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~- 136 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSE---------APLKLNDLARLVAKAKSLGLDV----VVCAPDPRTS-----LAAAALG--PH- 136 (226)
T ss_dssp HHHHHHHTCCEEEECCTT---------SCCBHHHHHHHHHHHHHTTCEE----EEEESSHHHH-----HHHHHTC--CS-
T ss_pred HHHHHHcCCCEEEEeeee---------ccCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CC-
Confidence 788899999999886522 2234556677888899999864 5556766554 2234454 33
Q ss_pred eeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccC
Q 020848 201 VPINALLAVK--GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT 275 (320)
Q Consensus 201 v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~ 275 (320)
+..+-|.- ||... ....++++.....+..|.+.++..+-..+| ++ .++........|++.++.|+..+..
T Consensus 137 --iIayep~waiGtG~~-v~t~~~d~~~~~~~~ir~~~~~~~ilyggs-V~-~~n~~~~~~~~giDG~LVG~a~l~a 208 (226)
T 1w0m_A 137 --AVAVEPPELIGTGRA-VSRYKPEAIVETVGLVSRHFPEVSVITGAG-IE-SGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp --EEEECCGGGTTTSCC-HHHHCHHHHHHHHHHHHHHCTTSEEEEESS-CC-SHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred --EEEEcChhhhccCCC-CCCCChhHHHHHHHHHHhccCCCEEEEeCC-CC-cHHHHHHHHhCCCCEEEECHHHHCC
Confidence 44555532 54311 013566766777777887765543333222 22 1333345567899999998755543
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=86.22 E-value=13 Score=30.63 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=77.6
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCe
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 200 (320)
+..|+++|++.+.++..- |...+.+.-+.++.+.+.|+.+ ++-.|++.+. +.+..++ +.
T Consensus 81 ~~~l~~~Ga~~Vllghse---------RR~~~~e~~~k~~~A~~~GL~~----ivcVge~~e~-----~~~~~~~--~~- 139 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSE---------NRMILADLEAAIRRAEEVGLMT----MVCSNNPAVS-----AAVAALN--PD- 139 (225)
T ss_dssp HHHHHHTTCCEEEESCGG---------GCCBHHHHHHHHHHHHHHTCEE----EEEESSHHHH-----HHHHTTC--CS-
T ss_pred HHHHHHcCCCEEEECcch---------hcCCHHHHHHHHHHHHHCCCEE----EEEeCCHHHH-----HHHhcCC--CC-
Confidence 788899999999887522 1234555677888899999865 5556776654 2234554 33
Q ss_pred eeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcccc
Q 020848 201 VPINALLAVK--GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT 274 (320)
Q Consensus 201 v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~ 274 (320)
+..|-|.- ||... ....++++.....+..|.+.++..+-..+| ++ .++........|++.++.|+..+.
T Consensus 140 --iIayep~waiGtG~~-v~t~~~d~~~~~~~~ir~~~~~~~ilyggs-V~-~~n~~~~~~~~~vDG~LVG~a~l~ 210 (225)
T 1hg3_A 140 --YVAVEPPELIGTGIP-VSKAKPEVITNTVELVKKVNPEVKVLCGAG-IS-TGEDVKKAIELGTVGVLLASGVTK 210 (225)
T ss_dssp --EEEECCTTTTTTSCC-TTTSCTHHHHHHHHHHHHHCTTSEEEEESS-CC-SHHHHHHHHHTTCSEEEESHHHHT
T ss_pred --EEEEeChhhhccCCC-CCCCChhHHHHHHHHHHhccCCCEEEEeCC-CC-cHHHHHHHHhCCCCEEEeCHHHHC
Confidence 55555542 55321 123556666677777787765543333222 22 133334556789999999875553
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=12 Score=30.11 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEe-CCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~-~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+++++.+.++.+.+.|++.+.+...+ +.. .+.++.++ ..+..+.+. .+..+.+.++...++|.|.|.
T Consensus 16 ~d~~~~~~~~~~~~~~G~~~i~l~~~~------~~~----~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~ 85 (212)
T 2v82_A 16 ITPDEALAHVGAVIDAGFDAVEIPLNS------PQW----EQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIV 85 (212)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEETTS------TTH----HHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC------hhH----HHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEE
Confidence 578899999999989999988875321 222 23444444 334443332 234678899999999999987
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 213 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~ 213 (320)
++.. + .+.++.+++.|.++ ++|. .|.+++. .+.+.| ++.+.++ | +.
T Consensus 86 ~~~~-------------~----~~~~~~~~~~g~~~----~~g~-~t~~e~~----~a~~~G--~d~v~v~---~--t~- 131 (212)
T 2v82_A 86 TPNI-------------H----SEVIRRAVGYGMTV----CPGC-ATATEAF----TALEAG--AQALKIF---P--SS- 131 (212)
T ss_dssp CSSC-------------C----HHHHHHHHHTTCEE----ECEE-CSHHHHH----HHHHTT--CSEEEET---T--HH-
T ss_pred eCCC-------------C----HHHHHHHHHcCCCE----Eeec-CCHHHHH----HHHHCC--CCEEEEe---c--CC-
Confidence 4321 1 12345666778664 3332 4666643 234566 6666641 1 10
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CceeecCCcccccChhHHHHHHHcCCceEeeCCcccc
Q 020848 214 LQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT 274 (320)
Q Consensus 214 ~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~ 274 (320)
... ...+...+...+ +..+-..+| .+ .+.-...+.+|++.+..|..+..
T Consensus 132 -----~~g----~~~~~~l~~~~~~~ipvia~GG-I~--~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 132 -----AFG----PQYIKALKAVLPSDIAVFAVGG-VT--PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp -----HHC----HHHHHHHHTTSCTTCEEEEESS-CC--TTTHHHHHHHTCSEEEECTTTCC
T ss_pred -----CCC----HHHHHHHHHhccCCCeEEEeCC-CC--HHHHHHHHHcCCCEEEEChHHhC
Confidence 111 222333333444 222322333 22 22234556789999988875543
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=85.94 E-value=3 Score=39.02 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
++-.+.+..+.+.|++-+++-+. .| .-+..++.++.+|+. ++.+..- +..+.+..+.|.++|+|.|.+++
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~a----hG---hs~~v~~~i~~ik~~~p~~~viaG-NVaT~e~a~~Li~aGAD~vkVGi 351 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSS----QG---NSVYQIEFIKWIKQTYPKIDVIAG-NVVTREQAAQLIAAGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCS----CC---CSHHHHHHHHHHHHHCTTSEEEEE-EECSHHHHHHHHHHTCSEEEECS
T ss_pred ccHHHHHHHHHhcCCcEEEEecc----cc---ccHHHHHHHHHHHhhCCcceEEec-cccCHHHHHHHHHcCCCEEeecC
Confidence 34566778888999998888542 23 235678888888854 4444332 24789999999999999998876
Q ss_pred ccc-HHHHhhhCC-C-CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHH
Q 020848 137 DTS-REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 137 et~-~~~~~~i~~-~-~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 188 (320)
=.. -=+-+.+.. + ..+..+.+..+.+++.|+++..+-=+ .+..|+...+
T Consensus 352 GpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI---~~sGDi~KAl 403 (556)
T 4af0_A 352 GSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGI---GNIGHIAKAL 403 (556)
T ss_dssp SCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCC---CSHHHHHHHH
T ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCc---CcchHHHHHh
Confidence 332 100011111 1 13566677778888888775333211 3555666554
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=85.87 E-value=15 Score=30.89 Aligned_cols=175 Identities=14% Similarity=0.053 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~le 137 (320)
....+.++.+.+.|+..+.+.+...-..|. .+ .++.++ ..++++....+..++.++.+.+.+|.|.|.+...
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~~f~G~---~~----~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPHRFGGS---LL----DLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCSSSCCC---HH----HHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHH
T ss_pred CCHHHHHHHHHHcCCCEEEEecchhhhccC---HH----HHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECcc
Confidence 345566677778999999886532222232 22 222333 4577877777778898999999999999998753
Q ss_pred ccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC
Q 020848 138 TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 217 (320)
Q Consensus 138 t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~ 217 (320)
..+ ++..+.++.+++.|+.+- +-. .+++++. .+.+++ .+.+++++... +.+
T Consensus 138 ~l~------------~~l~~l~~~a~~lGl~~l----vev-~~~~E~~----~a~~~g--ad~IGvn~~~l---~~~--- 188 (254)
T 1vc4_A 138 LLG------------ELTGAYLEEARRLGLEAL----VEV-HTERELE----IALEAG--AEVLGINNRDL---ATL--- 188 (254)
T ss_dssp HHG------------GGHHHHHHHHHHHTCEEE----EEE-CSHHHHH----HHHHHT--CSEEEEESBCT---TTC---
T ss_pred chH------------HHHHHHHHHHHHCCCeEE----EEE-CCHHHHH----HHHHcC--CCEEEEccccC---cCC---
Confidence 221 233455666777786642 322 3556654 333445 56777766442 112
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcccc
Q 020848 218 KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLT 274 (320)
Q Consensus 218 ~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~ 274 (320)
.++.+...++........++..+-..+ ++. ++.-..... |++.+.+|+.+..
T Consensus 189 -~~dl~~~~~L~~~i~~~~~~~~vIAeg---GI~s~~dv~~l~~-Ga~gvlVGsAl~~ 241 (254)
T 1vc4_A 189 -HINLETAPRLGRLARKRGFGGVLVAES---GYSRKEELKALEG-LFDAVLIGTSLMR 241 (254)
T ss_dssp -CBCTTHHHHHHHHHHHTTCCSEEEEES---CCCSHHHHHTTTT-TCSEEEECHHHHT
T ss_pred -CCCHHHHHHHHHhCccccCCCeEEEEc---CCCCHHHHHHHHc-CCCEEEEeHHHcC
Confidence 223333333332221111122222222 233 333344456 9999999975553
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=85.73 E-value=18 Score=31.89 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCC-----EEEEecccCCC---------CCCc---------hhHHHHHHHHHHhhhcCceEEEeC
Q 020848 57 TKDAVMQAAQKAKEAGST-----RFCMGAAWRDT---------IGRK---------TNFNQILEYVKDIRDMGMEVCCTL 113 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~-----~i~l~~g~~~~---------~ge~---------~~~~~l~~~i~~~k~~~~~i~~~~ 113 (320)
+.+...+.++.+.+.|.. .|.||.-...+ .... +..+.+.++.+..++.|+.+.+++
T Consensus 19 dle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~st~ 98 (350)
T 3g8r_A 19 NVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKANGFKAICTP 98 (350)
T ss_dssp CSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcEEecc
Confidence 456777777777777876 88887421100 0000 223445556666667899876654
Q ss_pred CCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHh
Q 020848 114 GMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLA 192 (320)
Q Consensus 114 g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~ 192 (320)
++.+.++.|.+.|++.+.|+--. -.+ +.-++.+.+.|.++ ++-. .-|.+|+...++++.
T Consensus 99 --fD~~svd~l~~~~v~~~KI~S~~----------~~N----~pLL~~va~~gKPv----iLstGmstl~Ei~~Ave~i~ 158 (350)
T 3g8r_A 99 --FDEESVDLIEAHGIEIIKIASCS----------FTD----WPLLERIARSDKPV----VASTAGARREDIDKVVSFML 158 (350)
T ss_dssp --CSHHHHHHHHHTTCCEEEECSSS----------TTC----HHHHHHHHTSCSCE----EEECTTCCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHcCCCEEEECccc----------ccC----HHHHHHHHhhCCcE----EEECCCCCHHHHHHHHHHHH
Confidence 78899999999999988885200 112 24456666667664 3323 149999999999999
Q ss_pred cCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeC
Q 020848 193 TLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTG 269 (320)
Q Consensus 193 ~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~ 269 (320)
+-| .+ +.+. ....+ + |.+..+--++.+...+..+|+..+-.+.-..+-.......++..||..+ ++-
T Consensus 159 ~~g--~~-viLl--hC~s~--Y---Pt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~~~~~~AAvAlGA~vIEkH~tl 228 (350)
T 3g8r_A 159 HRG--KD-LTIM--HCVAE--Y---PTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPDLMEPIMLAVAQGATVFEKHVGL 228 (350)
T ss_dssp TTT--CC-EEEE--ECCCC--S---SCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSSCCHHHHHHHHTTCCEEEEEBCC
T ss_pred HcC--CC-EEEE--ecCCC--C---CCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCCccHHHHHHHHcCCCEEEEecCc
Confidence 876 32 3332 11111 1 1111111245566667777654332221000000122346778899755 344
Q ss_pred CccccCC---CCChhHHHHHHHH
Q 020848 270 EKLLTTP---NNDFDADQLMFKV 289 (320)
Q Consensus 270 ~~~~~~~---~~~~~~~~~~i~~ 289 (320)
++--..+ ..++++..+|+++
T Consensus 229 dr~~g~D~~~Sl~P~ef~~lv~~ 251 (350)
T 3g8r_A 229 PTDQYGINNYSANPEQVRRWLAA 251 (350)
T ss_dssp CBTTBCCCTTCBCHHHHHHHHHH
T ss_pred ccCCCCcccccCCHHHHHHHHHH
Confidence 4310111 1356666655544
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=85.69 E-value=14 Score=30.66 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeC----CCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL----GMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~----g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++++.+.|+..+|+. |.+.+...+.+ +..++.+.+-. |..+ ..+.++-.+.
T Consensus 40 ~t~~~i~~lc~eA~~~~~~aVcV~---------p~~v~~a~~~L---~~s~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~ 107 (239)
T 3ngj_A 40 ATEEQIRKLCSEAAEYKFASVCVN---------PTWVPLCAELL---KGTGVKVCTVIGFPLGATPSEVKAYETKVAVEQ 107 (239)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHHHHH---TTSSCEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEC---------HHHHHHHHHHh---CCCCCeEEEEeccCCCCCchHHHHHHHHHHHHc
Confidence 688999999999999999999984 44555554443 44456654333 3322 2244455566
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeC-CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG-EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glg-et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.|.|.+-+.-. .+ ...+|+.+++-|+..++. +. .+-+|+-.+ -+++++....+.+.+.| .+.|...
T Consensus 108 GAdEIDmViNig-~l-----k~g~~~~v~~eI~~v~~a~~~~--~lKVIlEt~~Lt~eei~~a~~ia~~aG--ADfVKTS 177 (239)
T 3ngj_A 108 GAEEVDMVINIG-MV-----KAKKYDDVEKDVKAVVDASGKA--LTKVIIECCYLTNEEKVEVCKRCVAAG--AEYVKTS 177 (239)
T ss_dssp TCSEEEEECCHH-HH-----HTTCHHHHHHHHHHHHHHHTTS--EEEEECCGGGSCHHHHHHHHHHHHHHT--CSEEECC
T ss_pred CCCEEEEEeehH-Hh-----ccccHHHHHHHHHHHHHHhcCC--ceEEEEecCCCCHHHHHHHHHHHHHHC--cCEEECC
Confidence 999887755432 11 146777787777776664 32 233344332 47888888889999998 6766654
Q ss_pred -eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 205 -ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 205 -~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.|.+ ...+.++...+... .-+...+..++|--.. ......+.+||+++
T Consensus 178 TGf~~---------ggAt~~dv~lmr~~---vg~~v~VKasGGIrt~--~da~~~i~aGA~ri 226 (239)
T 3ngj_A 178 TGFGT---------HGATPEDVKLMKDT---VGDKALVKAAGGIRTF--DDAMKMINNGASRI 226 (239)
T ss_dssp CSSSS---------CCCCHHHHHHHHHH---HGGGSEEEEESSCCSH--HHHHHHHHTTEEEE
T ss_pred CCCCC---------CCCCHHHHHHHHHh---hCCCceEEEeCCCCCH--HHHHHHHHhcccce
Confidence 2321 23445543333222 2334455666553222 33456678999977
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=85.23 E-value=5.3 Score=36.62 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC----------CCC--chhHHHHHHHHHHhhh-c--CceEEEeCCCCCHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT----------IGR--KTNFNQILEYVKDIRD-M--GMEVCCTLGMLEKHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~----------~ge--~~~~~~l~~~i~~~k~-~--~~~i~~~~g~l~~e~ 120 (320)
++.+++.+.++.+.+.|++.|.+.+++... +|- +...+.-+++++.+++ . ++++..+.|..+.+.
T Consensus 308 ~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~D 387 (443)
T 1tv5_A 308 LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 387 (443)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHH
Confidence 567799999999999999999887643210 110 1123445677888773 4 688888999999999
Q ss_pred HHHHHHhccCeeccC
Q 020848 121 AIELKKAGLTAYNHN 135 (320)
Q Consensus 121 l~~L~~aGld~v~i~ 135 (320)
+.+...+|.|.|.++
T Consensus 388 A~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 388 ALEKIEAGASVCQLY 402 (443)
T ss_dssp HHHHHHTTEEEEEES
T ss_pred HHHHHHcCCCEEEEc
Confidence 999889999998876
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=84.89 E-value=15 Score=30.06 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cce--E--EEeCCCCCHHHHHHHHHhccCe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME--V--CCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~--i--~~~~g~l~~e~l~~L~~aGld~ 131 (320)
+++.+.+.++.+.+.|++-+.+.-.+.... +.. ..-.+.++.+++. +.. + .+++ ..+.++.+.++|+|.
T Consensus 21 d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~--~~~-~~~~~~i~~l~~~~~~~~~v~l~vnd---~~~~v~~~~~~Gad~ 94 (230)
T 1rpx_A 21 NFSKLGEQVKAIEQAGCDWIHVDVMDGRFV--PNI-TIGPLVVDSLRPITDLPLDVHLMIVE---PDQRVPDFIKAGADI 94 (230)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSS--SCB-CCCHHHHHHHGGGCCSCEEEEEESSS---HHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCcc--ccc-ccCHHHHHHHHhccCCcEEEEEEecC---HHHHHHHHHHcCCCE
Confidence 345666677777778988777642110110 000 1113555666643 333 2 2222 346789999999999
Q ss_pred eccCcc--ccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 132 YNHNLD--TSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 132 v~i~le--t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
+.+..+ .. ... .+.++.+++.|+.+...+. .+ +..+.. ..+....+.+-+..+.|
T Consensus 95 v~vh~~~~~~----------~~~---~~~~~~~~~~g~~ig~~~~--p~-t~~e~~------~~~~~~~d~vl~~~~~p- 151 (230)
T 1rpx_A 95 VSVHCEQSST----------IHL---HRTINQIKSLGAKAGVVLN--PG-TPLTAI------EYVLDAVDLVLIMSVNP- 151 (230)
T ss_dssp EEEECSTTTC----------SCH---HHHHHHHHHTTSEEEEEEC--TT-CCGGGG------TTTTTTCSEEEEESSCT-
T ss_pred EEEEecCccc----------hhH---HHHHHHHHHcCCcEEEEeC--CC-CCHHHH------HHHHhhCCEEEEEEEcC-
Confidence 987664 31 122 3445666667766544432 22 322221 11111256665445444
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCC----CceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQL 285 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p----~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~ 285 (320)
|..-.... .+.. ..+...|...+ +..+-+.+| +.++.....+.+|++.+..|..+... .++.+.++
T Consensus 152 -g~~g~~~~-~~~~---~~i~~l~~~~~~~~~~~pi~v~GG---I~~~n~~~~~~aGad~vvvgSaI~~a--~dp~~a~~ 221 (230)
T 1rpx_A 152 -GFGGQSFI-ESQV---KKISDLRKICAERGLNPWIEVDGG---VGPKNAYKVIEAGANALVAGSAVFGA--PDYAEAIK 221 (230)
T ss_dssp -TCSSCCCC-TTHH---HHHHHHHHHHHHHTCCCEEEEESS---CCTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHH
T ss_pred -CCCCcccc-HHHH---HHHHHHHHHHHhcCCCceEEEECC---CCHHHHHHHHHcCCCEEEEChhhhCC--CCHHHHHH
Confidence 32211111 2222 22222333322 222333332 33333344677899999988755432 34666666
Q ss_pred HHHH
Q 020848 286 MFKV 289 (320)
Q Consensus 286 ~i~~ 289 (320)
.+++
T Consensus 222 ~l~~ 225 (230)
T 1rpx_A 222 GIKT 225 (230)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=84.70 E-value=15 Score=30.19 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC----CC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM----LE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~----l~----~e~l~~L~~a 127 (320)
.+.++|.+.++++.+.|+..+|+. |.+.+...+.++ . +.+++..|. .+ ..+.+. .+.
T Consensus 14 ~t~~~i~~l~~~A~~~~~~aVcv~---------p~~v~~a~~~l~---g--v~v~tvigFP~G~~~~~~k~~E~~~-i~~ 78 (226)
T 1vcv_A 14 LTVDEAVAGARKAEELGVAAYCVN---------PIYAPVVRPLLR---K--VKLCVVADFPFGALPTASRIALVSR-LAE 78 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHGGGCS---S--SEEEEEESTTTCCSCHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEC---------HHHHHHHHHHhC---C--CeEEEEeCCCCCCCchHHHHHHHHH-HHC
Confidence 689999999999999999999984 334443333222 2 554433332 22 245666 788
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeee-
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINA- 205 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~- 205 (320)
|.|.|.+-+.-. .+ ...+|+.+.+-|+..+++--...+-+|+-. --+++++....+...+.| .+.|.-..
T Consensus 79 GAdEID~Vinig-----~~-~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaG--ADfVKTSTG 150 (226)
T 1vcv_A 79 VADEIDVVAPIG-----LV-KSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAG--AHFIKSSTG 150 (226)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHT--CSEEECCCS
T ss_pred CCCEEEEecchh-----hh-cCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcC--CCEEEeCCC
Confidence 998887655331 11 145788888877777764211233444434 236888999999999998 66665531
Q ss_pred eeecC-CCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHc---CCc
Q 020848 206 LLAVK-GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA---GAN 264 (320)
Q Consensus 206 ~~p~~-gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~---Gan 264 (320)
|.|.. .++..+....+.++...+....+..-+...+..++|--. .+.....+.+ |++
T Consensus 151 f~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt--~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 151 FAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRT--REQAKAIVDAIGWGED 211 (226)
T ss_dssp CCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCS--HHHHHHHHHHHCSCSC
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHHHHCCCC
Confidence 22100 111222345667665544444444455566666654322 2222345556 877
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=84.64 E-value=18 Score=30.76 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCchh-------------HHHHHHHHHHhhh--cCceE-EE---eC--C
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-------------FNQILEYVKDIRD--MGMEV-CC---TL--G 114 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~-------------~~~l~~~i~~~k~--~~~~i-~~---~~--g 114 (320)
+++..++.++.+.+.|++-+-|+-....+. ..|.. .+.++++++.+++ ..+++ .. |+ .
T Consensus 32 ~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~ 111 (271)
T 3nav_A 32 NPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYA 111 (271)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHH
Confidence 578888888888899999888863211111 11222 2378889999884 35553 22 21 0
Q ss_pred CCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 115 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 115 ~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
.-.++.++.++++|+|.+-+. | -.+++..+..+.+++.|++. -+++...-+.+.+..+.+.
T Consensus 112 ~g~~~f~~~~~~aGvdGvIip-D------------lp~ee~~~~~~~~~~~gl~~--I~lvap~t~~eri~~i~~~---- 172 (271)
T 3nav_A 112 RGIDDFYQRCQKAGVDSVLIA-D------------VPTNESQPFVAAAEKFGIQP--IFIAPPTASDETLRAVAQL---- 172 (271)
T ss_dssp TCHHHHHHHHHHHTCCEEEET-T------------SCGGGCHHHHHHHHHTTCEE--EEEECTTCCHHHHHHHHHH----
T ss_pred HhHHHHHHHHHHCCCCEEEEC-C------------CCHHHHHHHHHHHHHcCCeE--EEEECCCCCHHHHHHHHHH----
Confidence 113778999999999997763 1 12233456677788899873 2233223333333333332
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHH-HHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQAL-CFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~-~~~~Gan~~~~~~~~ 272 (320)
. ...+.......+.|.. ...+ .+....+...|..... ++..| .++....+.. .+..||+.+++|..+
T Consensus 173 ~--~gfiY~vs~~GvTG~~----~~~~-~~~~~~v~~vr~~~~~---Pv~vG-fGIst~e~~~~~~~~gADgvIVGSAi 240 (271)
T 3nav_A 173 G--KGYTYLLSRAGVTGAE----TKAN-MPVHALLERLQQFDAP---PALLG-FGISEPAQVKQAIEAGAAGAISGSAV 240 (271)
T ss_dssp C--CSCEEECCCC------------CC-HHHHHHHHHHHHTTCC---CEEEC-SSCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred C--CCeEEEEeccCCCCcc----cCCc-hhHHHHHHHHHHhcCC---CEEEE-CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 2 1223222222222322 1122 3345556666655432 22212 2333333344 788999999999644
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=84.55 E-value=6 Score=32.96 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.|++.+..+.+.+.|++-|.-++|. .++| ..++++.-+-+.+ ...+.+-.+.|..+.+.+..+.++|.+++..|
T Consensus 154 Lt~eei~~a~~ia~~aGADfVKTSTGf-~~gg--At~~dv~lmr~~v-g~~v~VKasGGIrt~~da~~~i~aGA~riGtS 229 (239)
T 3ngj_A 154 LTNEEKVEVCKRCVAAGAEYVKTSTGF-GTHG--ATPEDVKLMKDTV-GDKALVKAAGGIRTFDDAMKMINNGASRIGAS 229 (239)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCSS-SSCC--CCHHHHHHHHHHH-GGGSEEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred CCHHHHHHHHHHHHHHCcCEEECCCCC-CCCC--CCHHHHHHHHHhh-CCCceEEEeCCCCCHHHHHHHHHhcccceecc
Confidence 677888877777777888777665442 2222 2334333322222 22455667777778888888888888876654
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=5.7 Score=33.25 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+++++.+... .-..++|+--. +.-+|=....+.+.+.++.+++.|++++.-.. -+.++++.-++.|.++|-
T Consensus 75 t~emi~ial~~---kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GAd~IE 150 (260)
T 3o6c_A 75 NDEILNLALKL---KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN-PSLEDIEKSKILKAQFIE 150 (260)
T ss_dssp CHHHHHHHHHH---CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHc---CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCCCEEE
Confidence 35666665543 34578886110 01111112567788999999999998654332 468899999999999998
Q ss_pred cCccccHHHHh----hhCC-------------------CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHH
Q 020848 134 HNLDTSREFYS----KIIT-------------------TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 134 i~let~~~~~~----~i~~-------------------~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~ 185 (320)
+.-..+.+.+. .+.+ ...++.+.++.+.+++.|+.+. .|+|-+.+.+.
T Consensus 151 LhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~lGL~Vn----AGHGL~y~Nv~ 221 (260)
T 3o6c_A 151 LHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVA----AGHGLNYKNVK 221 (260)
T ss_dssp ECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE----ECTTCCTTTTH
T ss_pred EechHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 86655522222 1111 1123444555566667776654 45766655544
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=84.16 E-value=7 Score=31.30 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=53.9
Q ss_pred CHHHHHHHH-HHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEe-------CC--CCCHHHHHHHH
Q 020848 57 TKDAVMQAA-QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCT-------LG--MLEKHQAIELK 125 (320)
Q Consensus 57 s~eei~~~~-~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~-------~g--~l~~e~l~~L~ 125 (320)
+.|+.++.+ +.+.+.|++.|++-+. .|+ .-..+.+ .++ ++. +.++ +| .++++..+.|.
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~----sG~--TA~k~~e---~~~--~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASS----YGD--TAMKALE---MAE--GLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECS----SSH--HHHHHHH---HCT--TCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeC----CCh--HHHHHHH---Hhc--CCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 455555555 5677789999998643 242 1222333 222 344 3333 33 27899999999
Q ss_pred HhccCeeccC--cccc-HHHHhhhCCCCCHHHHHHHHH
Q 020848 126 KAGLTAYNHN--LDTS-REFYSKIITTRSYDERLETLK 160 (320)
Q Consensus 126 ~aGld~v~i~--let~-~~~~~~i~~~~~~~~~l~~i~ 160 (320)
+.|+..+..+ +.+. +.+.++..+-...+-.-++++
T Consensus 96 ~~G~~V~t~tH~lsgveR~is~kfGG~~p~eiiA~tLR 133 (201)
T 1vp8_A 96 KRGAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALR 133 (201)
T ss_dssp HTTCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hCCCEEEEEeccccchhHHHHHhcCCCCHHHHHHHHHH
Confidence 9999877643 5666 444444433334444445555
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=83.70 E-value=9.3 Score=33.60 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 91 NFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
..+++.++++.+.+.|.. +.-|.|.++++.+.+|.+
T Consensus 167 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~ 205 (337)
T 3ble_A 167 SPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVD 205 (337)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHH
Confidence 345666666666665543 233566666666555543
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=83.29 E-value=9.8 Score=31.50 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.|++.+..+.+.+.|.+-|.-.+|..++.| ...+++.-+-+.+. ..+.+-.+.|..+.+.+..+.++|.+++..|
T Consensus 144 t~eei~~a~~ia~~aGADfVKTSTGf~~~~g--At~edv~lm~~~v~-~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS 219 (231)
T 3ndo_A 144 GEPLLADVCRVARDAGADFVKTSTGFHPSGG--ASVQAVEIMARTVG-ERLGVKASGGIRTAEQAAAMLDAGATRLGLS 219 (231)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECCCSCCTTCS--CCHHHHHHHHHHHT-TTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHHHHHCcCEEEcCCCCCCCCC--CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhcchhcccc
Confidence 7888888888888888887776555321233 23333333322222 2456667778888888888889999877654
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=6.7 Score=35.32 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 150 RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 150 ~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
......++....|...|+.+.++.+ + +.=-+...+.++..++
T Consensus 276 GGit~~~~ia~~A~~~gi~~~~h~~-~---~~i~~aa~~hlaaa~p 317 (393)
T 4dwd_A 276 GGITGMMQCAALAHAHGVEFVPHQT-Q---PGVGHFANIHVLSTLM 317 (393)
T ss_dssp THHHHHHHHHHHHHHHTCEECCCCC-C---SSHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHcCCEEeecCC-C---cHHHHHHHHHHHHhCC
Confidence 3577788888999999998877765 3 2223455555555553
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=83.01 E-value=8 Score=34.40 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCeeeeeEE
Q 020848 150 RSYDERLETLKHVREAGINVCSGGI 174 (320)
Q Consensus 150 ~~~~~~l~~i~~a~~~Gi~v~~~~i 174 (320)
......++..+.+++.|+.+.++.+
T Consensus 277 GGi~~~~~i~~~A~~~gi~~~~h~~ 301 (371)
T 2ovl_A 277 GGYTTFRKVAALAEANNMLLTSHGV 301 (371)
T ss_dssp TSHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCHHHHHHHHHHHHHcCCeEccccH
Confidence 4688888999999999998766543
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=26 Score=31.40 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCC---CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG---RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g---e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
+.|.+++.++.+++.|++-+.++.-.+.+.. ..+..+.+..+.+..++.|+++.++. ++.+.++.+.+. +|.+.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~--~d~~~~~~l~~~-vd~lk 230 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEI--VTPADIEVALDY-VDVIQ 230 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC--CSGGGHHHHTTT-CSEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEec--CCHHHHHHHHhh-CCEEE
Confidence 7899999999999999987777642111100 01234555444444447899976654 677788888777 88888
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee--eeecCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA--LLAVKG 211 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~--~~p~~g 211 (320)
|+--.. .++ .-++.+.+.|.+|. +=-|..-+.+|+...++.+..-| ...+.+.. ..-.|.
T Consensus 231 Igs~~~----------~n~----~LL~~~a~~gkPVi--lk~G~~~t~~e~~~Ave~i~~~G--n~~i~L~~rG~s~yp~ 292 (385)
T 3nvt_A 231 IGARNM----------QNF----ELLKAAGRVDKPIL--LKRGLSATIEEFIGAAEYIMSQG--NGKIILCERGIRTYEK 292 (385)
T ss_dssp ECGGGT----------TCH----HHHHHHHTSSSCEE--EECCTTCCHHHHHHHHHHHHTTT--CCCEEEEECCBCCSCC
T ss_pred ECcccc----------cCH----HHHHHHHccCCcEE--EecCCCCCHHHHHHHHHHHHHcC--CCeEEEEECCCCCCCC
Confidence 863111 122 44555666666542 22233459999999999999887 33344432 122222
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCce-eec--CCcccccChhHHHHHHHcCCceEeeCCcccc----CCC---CChh
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAM-VRL--SAGRVRFSMPEQALCFLAGANSIFTGEKLLT----TPN---NDFD 281 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~-i~~--~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~----~~~---~~~~ 281 (320)
.+... ++ ++.+..++..+.-+. .-. +.|...+.+.....++..||+.++....+-. +++ .+++
T Consensus 293 ~~~~~---ld----l~~i~~lk~~~~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~pd~a~~D~~~sl~p~ 365 (385)
T 3nvt_A 293 ATRNT---LD----ISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDIP 365 (385)
T ss_dssp SSSSB---CC----TTHHHHHHHHBSSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCSSCTTTSBCHH
T ss_pred CCccc---cC----HHHHHHHHHhcCCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCChhhcCCcccccCCHH
Confidence 12211 11 222333444322111 111 1222233334456688899998876532211 232 3566
Q ss_pred HHHHHHHH
Q 020848 282 ADQLMFKV 289 (320)
Q Consensus 282 ~~~~~i~~ 289 (320)
+..+|+++
T Consensus 366 el~~lv~~ 373 (385)
T 3nvt_A 366 EFEEFWNA 373 (385)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=82.84 E-value=5.8 Score=34.39 Aligned_cols=30 Identities=13% Similarity=-0.025 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
.+.+++...+..+.+.|++.|+...|+.+.
T Consensus 94 ~~~~~l~~~L~~~~~~GI~nILaLrGDpp~ 123 (304)
T 3fst_A 94 ATPDELRTIARDYWNNGIRHIVALRGDLPP 123 (304)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCC-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence 466677777766667777777666555443
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=82.74 E-value=9 Score=31.51 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+++.+.++.+.+.|++.+...+|. .++| ...+.+..+.+.+ ...+++..+.|..+.+.+.++.++|.+++..+
T Consensus 129 l~~~~~~~~a~~a~eaGad~I~tstg~-~~gg--a~~~~i~~v~~~v-~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s 204 (225)
T 1mzh_A 129 LNEEEIKKAVEICIEAGADFIKTSTGF-APRG--TTLEEVRLIKSSA-KGRIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCCSC-SSSC--CCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCC-CCCC--CCHHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHhCchHHHHc
Confidence 677888888888888898888544331 1222 2223222222222 12577888888888888888888999866554
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.66 E-value=7.8 Score=32.49 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 64 AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 64 ~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.++.+.+.|+..|++.+....-...... +++++.+++ .++++....|..+.+.+.++.++|++.+.++
T Consensus 161 ~~~~~~~~G~~~i~~t~~~~~g~~~g~~----~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 161 WVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHTTCSEEEEEETTTTTTCSCCC----HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHcCCCEEEEEeecCCCCcCCCC----HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 3444556899998885422110000112 456666663 4788888999999999999999999998886
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=82.20 E-value=21 Score=29.94 Aligned_cols=163 Identities=13% Similarity=0.194 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c-CceEEEeC------CC--CCHHHHHH-H
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTL------GM--LEKHQAIE-L 124 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~-~~~i~~~~------g~--l~~e~l~~-L 124 (320)
.+.+++++.++.+...|++-+-+=- +...+....+++.+.+..+++ . ++++..|. |. .+++.+.. +
T Consensus 29 ~t~~e~l~~a~~~~~~~aD~vElR~---D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll 105 (258)
T 4h3d_A 29 KNKKDIIKEAKELKDACLDIIEWRV---DFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLN 105 (258)
T ss_dssp SSHHHHHHHHHHHTTSSCSEEEEEG---GGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEee---ccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHH
Confidence 4789999999998888888776621 111223356788888888874 2 56765553 32 45544333 3
Q ss_pred H---Hhc-cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE-EEeCCCHHHHHHHHHHHhcCCCCCC
Q 020848 125 K---KAG-LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-IGLGEAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 125 ~---~aG-ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i-~Glget~ed~~~~l~~l~~l~~~~~ 199 (320)
+ +.| +|.|-+-+...++. +-+.++.+++.|.++-...= +--..+.+++.+.+..+.++| ++
T Consensus 106 ~~~~~~~~~d~iDvEl~~~~~~------------~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~g--aD 171 (258)
T 4h3d_A 106 KEISNTGLVDLIDVELFMGDEV------------IDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELG--AD 171 (258)
T ss_dssp HHHHHTTCCSEEEEEGGGCHHH------------HHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTT--CS
T ss_pred HHHHhcCCchhhHHhhhccHHH------------HHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhC--CC
Confidence 3 334 56665544332222 22334556777766422211 101235578888888888887 55
Q ss_pred eeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecC
Q 020848 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS 244 (320)
Q Consensus 200 ~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~ 244 (320)
.+.+-. +| .+ .-+...+++....++...++ +.+-++
T Consensus 172 IvKia~-~~--~~------~~D~l~Ll~~~~~~~~~~~~~P~I~~~ 208 (258)
T 4h3d_A 172 LPKIAV-MP--QN------EKDVLVLLEATNEMFKIYADRPIITMS 208 (258)
T ss_dssp EEEEEE-CC--SS------HHHHHHHHHHHHHHHHHTCSSCBEEEE
T ss_pred EEEEEE-cc--CC------HHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 454422 22 22 12344566666655555443 445444
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=82.17 E-value=9.4 Score=34.62 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC----------CCC--CchhHHHHHHHHHHhhh-c--CceEEEeCCCCCHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD----------TIG--RKTNFNQILEYVKDIRD-M--GMEVCCTLGMLEKHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~----------~~g--e~~~~~~l~~~i~~~k~-~--~~~i~~~~g~l~~e~ 120 (320)
++.+++.+.++.+.+.|++.|.+...+.. .+| .+...+.-+++++.+++ . .+++..+.|..+.+.
T Consensus 280 ~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eD 359 (415)
T 3i65_A 280 LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 359 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH
Confidence 56778999999999999999988642211 111 12345666777777773 4 588888999999999
Q ss_pred HHHHHHhccCeeccC
Q 020848 121 AIELKKAGLTAYNHN 135 (320)
Q Consensus 121 l~~L~~aGld~v~i~ 135 (320)
+.+...+|.|.|.++
T Consensus 360 a~e~l~aGAd~VqIg 374 (415)
T 3i65_A 360 ALEKIEAGASVCQLY 374 (415)
T ss_dssp HHHHHHHTEEEEEES
T ss_pred HHHHHHcCCCEEEEc
Confidence 888888999998886
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=4 Score=36.39 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG- 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG- 128 (320)
.+.++..+.++.+.+.|+..+.+.++.... .+ +.. ..++++.+| ..++++..+.|..+.+.++++.+.|
T Consensus 243 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~-~~~---~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~ 318 (363)
T 3l5l_A 243 QTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWG-PAF---MGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ 318 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCC-TTT---THHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCC-cch---hHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCC
Confidence 356788888888888999988887643211 11 111 234555555 3467777777777899999998888
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
+|.|.++
T Consensus 319 aD~V~iG 325 (363)
T 3l5l_A 319 LDLVSVG 325 (363)
T ss_dssp CSEEECC
T ss_pred ccEEEec
Confidence 8988886
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=82.10 E-value=6.2 Score=34.92 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCC--CCCCc--hhHHHHHHHHHHhh-hc-CceEEEeCCCCCHHHHHHHHHhccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRD--TIGRK--TNFNQILEYVKDIR-DM-GMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~--~~ge~--~~~~~l~~~i~~~k-~~-~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
+.++..+.++.+.+.|++.|.+.++... ..|.. .....-+++++.++ .. ++++..+.|..+.+.+.++.+ |+|
T Consensus 142 ~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD 220 (350)
T 3b0p_A 142 TYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVD 220 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSS
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCC
Confidence 4567888888888999999998764321 01100 00001245566666 34 788889989889999888887 999
Q ss_pred eeccC
Q 020848 131 AYNHN 135 (320)
Q Consensus 131 ~v~i~ 135 (320)
.|.++
T Consensus 221 ~V~iG 225 (350)
T 3b0p_A 221 GVMLG 225 (350)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99886
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=82.01 E-value=10 Score=33.87 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 150 RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 150 ~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
..+...++....|...|+.+.++.++ ++.=-+...+.++..++
T Consensus 280 GGit~~~~ia~~A~~~gi~~~~~~~~---es~i~~aa~~hlaaa~p 322 (383)
T 3i4k_A 280 GGLLESKKIAAIAEAGGLACHGATSL---EGPIGTAASLQFAASTK 322 (383)
T ss_dssp TSHHHHHHHHHHHHHTTCEEEECCSC---CCHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCeEEeCCCC---ccHHHHHHHHHHHHcCC
Confidence 46788888888999999887544433 45444555565555553
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=82.00 E-value=8.8 Score=34.44 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHcCCeeeeeEE
Q 020848 150 RSYDERLETLKHVREAGINVCSGGI 174 (320)
Q Consensus 150 ~~~~~~l~~i~~a~~~Gi~v~~~~i 174 (320)
..+...++.++.|++.|+.+.++.+
T Consensus 280 GGit~~~~i~~~A~~~gi~~~~~~~ 304 (391)
T 2qgy_A 280 GGLIDIIEISNEASNNGIFISPHCW 304 (391)
T ss_dssp SCHHHHHHHHHHHHHTTCEECCBCC
T ss_pred CCHHHHHHHHHHHHHCCCEEeccCC
Confidence 3678888888999999988766644
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=81.91 E-value=4 Score=35.57 Aligned_cols=68 Identities=6% Similarity=0.027 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCEEEEecccCCCC-CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHH-hccCeeccC
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK-AGLTAYNHN 135 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~-aGld~v~i~ 135 (320)
+.++.+.+.|++.|.+.++..... ..+..+ +.++.+++ ++++..+.|..+.+.+.++.+ .|+|.|.++
T Consensus 144 ~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~----~~i~~i~~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iG 213 (318)
T 1vhn_A 144 EIYRILVEEGVDEVFIHTRTVVQSFTGRAEW----KALSVLEK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVA 213 (318)
T ss_dssp HHHHHHHHTTCCEEEEESSCTTTTTSSCCCG----GGGGGSCC-SSCEEEESSCCSHHHHHHHHHHHCCSEEEES
T ss_pred HHHHHHHHhCCCEEEEcCCCccccCCCCcCH----HHHHHHHc-CCeEEEECCcCCHHHHHHHHHcCCCCEEEEC
Confidence 666777788999998876543221 112222 45566666 788888888888888887777 799999987
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=81.53 E-value=11 Score=31.79 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+++.+.++.+.+.|.+-|.-.+|. .+.| ...+++.-+-+.+. ..+.+-.+.|..+.+.+..+.++|.+++..|
T Consensus 170 Lt~eei~~A~~ia~eaGADfVKTSTGf-~~~G--AT~edV~lm~~~vg-~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS 245 (260)
T 3r12_A 170 LDTEEKIAACVISKLAGAHFVKTSTGF-GTGG--ATAEDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADRIGTS 245 (260)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCCSS-SSCC--CCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHHHHHhCcCEEEcCCCC-CCCC--CCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCceeecc
Confidence 688888888888888888877765543 2223 23333333222222 2466677788888889999999999987654
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.30 E-value=7.7 Score=33.19 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC----CCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM----LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~----l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+-=. ..| ....+.+.++++..+. +.+..+... -..+.++.|.++|+++|.
T Consensus 110 ~~~M~~dI~~~~~~GAdGvVfG~L~--~dg-~iD~~~~~~Li~~a~~--l~vTFHRAFD~~~d~~~Ale~Li~lGvdrIL 184 (287)
T 3iwp_A 110 IEVMKADIRLAKLYGADGLVFGALT--EDG-HIDKELCMSLMAICRP--LPVTFHRAFDMVHDPMAALETLLTLGFERVL 184 (287)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBC--TTS-CBCHHHHHHHHHHHTT--SCEEECGGGGGCSCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeC--CCC-CcCHHHHHHHHHHcCC--CcEEEECchhccCCHHHHHHHHHHcCCCEEE
Confidence 3455566677788999999986311 112 2456777777777664 444444331 246789999999999988
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeeeEEEEeCCCHHHHHHHHHH
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHT 190 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~ 190 (320)
.+=... +..+-++.++.+.+ ++- .+.++.|=|-+.+.+.++++.
T Consensus 185 TSG~~~-----------~a~~Gl~~Lk~Lv~~a~~--rI~ImaGGGV~~~Ni~~l~~~ 229 (287)
T 3iwp_A 185 TSGCDS-----------SALEGLPLIKRLIEQAKG--RIVVMPGGGITDRNLQRILEG 229 (287)
T ss_dssp ECTTSS-----------STTTTHHHHHHHHHHHTT--SSEEEECTTCCTTTHHHHHHH
T ss_pred CCCCCC-----------ChHHhHHHHHHHHHHhCC--CCEEEECCCcCHHHHHHHHHh
Confidence 752110 11111333344333 232 345677777777666666643
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=81.24 E-value=23 Score=29.76 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++.+.+.|+..+|+. |.+.+...+.+ +..++.+.+- .|..+ ..+.+.-.+.
T Consensus 56 ~t~~~I~~lc~eA~~~~~aaVCV~---------p~~V~~a~~~L---~gs~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~ 123 (260)
T 3r12_A 56 ATPDDIKKLCLEARENRFHGVCVN---------PCYVKLAREEL---EGTDVKVVTVVGFPLGANETRTKAHEAIFAVES 123 (260)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEC---------GGGHHHHHHHH---TTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEC---------HHHHHHHHHHh---cCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 688999999999999999999984 44555444433 4445665432 23322 2234455666
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC-CCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG-EAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg-et~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.|.|.+-+.-. .+ ...+|+.+.+-|+..+++--...+-+|+-.+ -+++++....+.+.+.| .+.|.-.
T Consensus 124 GAdEIDmViNig-----~l-k~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaG--ADfVKTS-- 193 (260)
T 3r12_A 124 GADEIDMVINVG-----ML-KAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAG--AHFVKTS-- 193 (260)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTT--CSEEECC--
T ss_pred CCCEEEEEeehh-----hh-ccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC--cCEEEcC--
Confidence 998887655332 11 1357888877777777651122334455442 47888999999999998 6666553
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|-+.. ...+.++...+... .-+...+..++|--.. ......+.+||+++
T Consensus 194 -----TGf~~-~GAT~edV~lm~~~---vg~~v~VKaAGGIrt~--~~al~mi~aGA~Ri 242 (260)
T 3r12_A 194 -----TGFGT-GGATAEDVHLMKWI---VGDEMGVKASGGIRTF--EDAVKMIMYGADRI 242 (260)
T ss_dssp -----CSSSS-CCCCHHHHHHHHHH---HCTTSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred -----CCCCC-CCCCHHHHHHHHHH---hCCCceEEEeCCCCCH--HHHHHHHHcCCcee
Confidence 22221 23455553333332 2345566666653322 33455688999987
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=81.17 E-value=6.7 Score=34.36 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM 78 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l 78 (320)
+++.+++.++.+.+.|+..|.|
T Consensus 149 ~~~~~~~~~~~~~~~G~~~i~l 170 (325)
T 3eeg_A 149 DQAFLARMVEAVIEAGADVVNI 170 (325)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEC
T ss_pred hHHHHHHHHHHHHhcCCCEEEe
Confidence 4444444444444445544444
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=80.80 E-value=14 Score=31.65 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHh-hh--cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI-RD--MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~-k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
++.|++.+.++.+.+.|++-|.-.+|.. +.| ...+++ ++++.+ +. ..+.+-...|..+.+.+..+.++|.+++
T Consensus 185 Lt~eei~~A~~ia~eaGADfVKTSTGf~-~~G--AT~edv-~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 185 LTADEIIAGCVLSSLAGADYVKTSTGFN-GPG--ASIENV-SLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCCSSS-SCC--CCHHHH-HHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCC-CCC--CCHHHH-HHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 7888988888888889998876655432 222 234443 333333 22 3466778888889999999999999987
Q ss_pred ccC
Q 020848 133 NHN 135 (320)
Q Consensus 133 ~i~ 135 (320)
..|
T Consensus 261 GtS 263 (288)
T 3oa3_A 261 GAS 263 (288)
T ss_dssp EES
T ss_pred ehh
Confidence 654
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=80.80 E-value=23 Score=29.30 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++++.+.|+..+|+. |.+.+... .++..++.+.+- .|..+ ..+.+.-.+.
T Consensus 26 ~t~~~i~~lc~eA~~~~~~aVcV~---------p~~v~~a~----~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Ai~~ 92 (231)
T 3ndo_A 26 ATPSDVTALVDEAADLGVFAVCVS---------PPLVSVAA----GVAPSGLAIAAVAGFPSGKHVPGIKATEAELAVAA 92 (231)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEC---------GGGHHHHH----HHCCTTCEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEC---------HHHHHHHH----HhcCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 688999999999999999999884 33444332 334445664433 23322 2234455667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeC-----CCHHHHHHHHHHHhcCCCCCCe
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG-----EAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glg-----et~ed~~~~l~~l~~l~~~~~~ 200 (320)
|.|.|.+-+.-. .+ ...+|+.+.+-|+..++. |..+ -+|+-.+ .+++++....+.+.+.| .+.
T Consensus 93 GAdEIDmVinig-----~l-k~g~~~~v~~ei~~v~~a~~~~~l--KvIiEt~~L~~~~t~eei~~a~~ia~~aG--ADf 162 (231)
T 3ndo_A 93 GATEIDMVIDVG-----AA-LAGDLDAVSADITAVRKAVRAATL--KVIVESAALLEFSGEPLLADVCRVARDAG--ADF 162 (231)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHTTTSEE--EEECCHHHHHHHTCHHHHHHHHHHHHHTT--CSE
T ss_pred CCCEEEEEeehH-----hh-hcccHHHHHHHHHHHHHHccCCce--EEEEECcccCCCCCHHHHHHHHHHHHHHC--cCE
Confidence 998887655331 11 135788887777777664 3323 3444221 27888999999999998 666
Q ss_pred eeeee-eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 201 VPINA-LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 201 v~~~~-~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|.-.. |.| ....+.++...+... .-+...+..++|--.. +.....+.+||+++
T Consensus 163 VKTSTGf~~--------~~gAt~edv~lm~~~---v~~~v~VKaaGGIrt~--~~a~~~i~aGa~Ri 216 (231)
T 3ndo_A 163 VKTSTGFHP--------SGGASVQAVEIMART---VGERLGVKASGGIRTA--EQAAAMLDAGATRL 216 (231)
T ss_dssp EECCCSCCT--------TCSCCHHHHHHHHHH---HTTTSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred EEcCCCCCC--------CCCCCHHHHHHHHHH---hCCCceEEEeCCCCCH--HHHHHHHHhcchhc
Confidence 65543 321 123445543333332 2245566666553222 33456678999987
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=80.71 E-value=14 Score=31.34 Aligned_cols=120 Identities=9% Similarity=-0.054 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeC---------CCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL---------GMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~---------g~l~~e~l~~L~~ 126 (320)
+++..+.+.+..+- .-++-+.|++|+.. .++.|.+.++.+++.++.+..-. | .-++.++..++
T Consensus 50 lg~~~~~DlLe~ag-~yID~lKfg~GTs~------l~~~l~ekI~l~~~~gV~v~~GGTlfE~~l~qg-~~~~yl~~~k~ 121 (276)
T 1u83_A 50 YPLQFFKDAIAGAS-DYIDFVKFGWGTSL------LTKDLEEKISTLKEHDITFFFGGTLFEKYVSQK-KVNEFHRYCTY 121 (276)
T ss_dssp CCHHHHHHHHHHHG-GGCCEEEECTTGGG------GCTTHHHHHHHHHHTTCEEEECHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh-hhcceEEecCcchh------hhHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcC-cHHHHHHHHHH
Confidence 77777776665433 33788888876432 22338888888888887764321 3 45888999999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-------CCCHHHHHHHHHHHhcCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-------GEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-------get~ed~~~~l~~l~~l~ 195 (320)
.|++.|-+|--+. .-+.+++.+.|+.+++. +.+-+.+ |. -.+.+++++.++.-.+.|
T Consensus 122 lGF~~IEISdGti---------~l~~~~~~~lI~~a~~~-f~Vl~Ev--G~K~~~~~~~~~~~~~I~~~~~dLeAG 185 (276)
T 1u83_A 122 FGCEYIEISNGTL---------PMTNKEKAAYIADFSDE-FLVLSEV--GSKDAELASRQSSEEWLEYIVEDMEAG 185 (276)
T ss_dssp TTCSEEEECCSSS---------CCCHHHHHHHHHHHTTT-SEEEEEC--SCCC------CCSTHHHHHHHHHHHHT
T ss_pred cCCCEEEECCCcc---------cCCHHHHHHHHHHHHhh-cEEeeec--cccCccccCCCCHHHHHHHHHHHHHCC
Confidence 9999999874332 23566777777777776 5543322 22 124455666665555555
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=80.62 E-value=14 Score=30.49 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhcCce-EEEeCC----CCCHH----HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHH
Q 020848 94 QILEYVKDIRDMGME-VCCTLG----MLEKH----QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVRE 164 (320)
Q Consensus 94 ~l~~~i~~~k~~~~~-i~~~~g----~l~~e----~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~ 164 (320)
.+.+.++.+++.|+. +..... ..+++ ..+.++++|+....+.... . .+.+...+.++.+.+
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~---------~~~~~~~~~i~~A~~ 100 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIY-M---------KSEEEIDRAFDYAKR 100 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEE-E---------CSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccc-c---------CCHHHHHHHHHHHHH
Confidence 456666777777665 433322 23443 3445566677655443211 1 467778888999999
Q ss_pred cCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 165 AGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 165 ~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.|.+.-.. . .+ .+.+.++.+.+++.|
T Consensus 101 lGa~~v~~-~--p~--~~~l~~l~~~a~~~g 126 (257)
T 3lmz_A 101 VGVKLIVG-V--PN--YELLPYVDKKVKEYD 126 (257)
T ss_dssp HTCSEEEE-E--EC--GGGHHHHHHHHHHHT
T ss_pred hCCCEEEe-c--CC--HHHHHHHHHHHHHcC
Confidence 99873221 1 22 345666777777776
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=80.16 E-value=23 Score=29.03 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hc-CceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DM-GMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+.++.++.++.+.+.|++-+-+.- .. + .-.+.++.++ +. ++.+-... .++.+.++...++|.|.+.
T Consensus 35 ~~~~~~~~~~~al~~gGv~~iel~~--k~----~----~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd~v~ 103 (225)
T 1mxs_A 35 AREEDILPLADALAAGGIRTLEVTL--RS----Q----HGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQFVV 103 (225)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEES--SS----T----HHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCSSEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEec--CC----c----cHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCCEEE
Confidence 4677888889999999999887752 11 2 1233455444 22 33332222 4788999999999999987
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 213 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~ 213 (320)
.+... .+.++.+++.|+.. +.|. .|.+++.. +.+.| .+.+.+++
T Consensus 104 ~p~~d-----------------~~v~~~~~~~g~~~----i~G~-~t~~e~~~----A~~~G--ad~vk~FP-------- 147 (225)
T 1mxs_A 104 TPGIT-----------------EDILEAGVDSEIPL----LPGI-STPSEIMM----GYALG--YRRFKLFP-------- 147 (225)
T ss_dssp CSSCC-----------------HHHHHHHHHCSSCE----ECEE-CSHHHHHH----HHTTT--CCEEEETT--------
T ss_pred eCCCC-----------------HHHHHHHHHhCCCE----EEee-CCHHHHHH----HHHCC--CCEEEEcc--------
Confidence 64211 24556666777554 4453 46666544 34666 77787722
Q ss_pred CCCCCCCCHHHH--HHHHHHHHHhCCCceeecCCcccccChhHHHHHHH-cCCceEeeCC
Q 020848 214 LQDQKPVEIWEM--IRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL-AGANSIFTGE 270 (320)
Q Consensus 214 ~~~~~~~~~~e~--~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~-~Gan~~~~~~ 270 (320)
.... ...+...+..+|+..+-..+ ++..+.-...+. +|+..+. +.
T Consensus 148 --------a~~~~G~~~lk~i~~~~~~ipvvaiG---GI~~~N~~~~l~~~Ga~~v~-gS 195 (225)
T 1mxs_A 148 --------AEISGGVAAIKAFGGPFGDIRFCPTG---GVNPANVRNYMALPNVMCVG-TT 195 (225)
T ss_dssp --------HHHHTHHHHHHHHHTTTTTCEEEEBS---SCCTTTHHHHHHSTTBCCEE-EC
T ss_pred --------CccccCHHHHHHHHhhCCCCeEEEEC---CCCHHHHHHHHhccCCEEEE-Ec
Confidence 1111 33444445556543222222 233333344566 5888877 54
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=80.12 E-value=12 Score=33.52 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-ccCCC-C---CC-chhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGA-AWRDT-I---GR-KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~-g~~~~-~---ge-~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
-+.+++.+.++...+.|+..+.+.. |+... . +. ....+.+.++++.+++.|+.+.++.. ..+.++...++|+
T Consensus 172 ~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~al~~G~ 249 (426)
T 2r8c_A 172 DGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAY--TPAAIARAVRCGV 249 (426)
T ss_dssp CSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEEC--SHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeC--ChHHHHHHHHcCC
Confidence 4688999999888888887766532 11111 1 11 13456778888888877877655443 4456666667777
Q ss_pred CeeccC
Q 020848 130 TAYNHN 135 (320)
Q Consensus 130 d~v~i~ 135 (320)
+.+.+.
T Consensus 250 ~~i~H~ 255 (426)
T 2r8c_A 250 RTIEHG 255 (426)
T ss_dssp SEEEEC
T ss_pred CEEecC
Confidence 766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 320 | ||||
| d1r30a_ | 312 | c.1.28.1 (A:) Biotin synthase {Escherichia coli [T | 4e-71 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Score = 220 bits (562), Expect = 4e-71
Identities = 163/277 (58%), Positives = 204/277 (73%), Gaps = 2/277 (0%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ TLLSIKTG C EDC YCPQSSRY TG++ ++LM + V+++A+KAK AGSTRFCM
Sbjct: 36 QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCM 95
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAW++ + + + + V+ ++ MG+E C TLG L + QA L AGL YNHNLDT
Sbjct: 96 GAAWKNP--HERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT 153
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP 198
S EFY IITTR+Y ERL+TL+ VR+AGI VCSGGI+GLGE +DR GLL LA LPT P
Sbjct: 154 SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPP 213
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPIN L+ VKGTPL D V+ ++ IR IA ARI+MP + VRLSAGR + + QA+C
Sbjct: 214 ESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC 273
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 295
F+AGANSIF G KLLTTPN + D D +F+ LGL P+
Sbjct: 274 FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQ 310
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 320 | |||
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 99.85 | |
| d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {S | 99.75 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 97.52 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 96.18 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.16 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 95.78 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.65 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 95.64 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 95.26 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 94.37 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 93.98 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 93.34 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 93.14 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 92.64 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 91.81 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 91.16 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 91.1 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 90.75 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 89.84 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 89.48 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 87.79 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 87.67 | |
| d1x5wa2 | 29 | Zinc finger protein 64, ZFP68 {Human (Homo sapiens | 86.63 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 85.85 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 85.77 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 85.74 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 85.65 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 85.63 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 85.59 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 85.22 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 84.45 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 84.39 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 84.37 | |
| d7reqb2 | 163 | Methylmalonyl-CoA mutase beta subunit, C-terminal | 84.21 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 83.93 | |
| d1b5ta_ | 275 | Methylenetetrahydrofolate reductase {Escherichia c | 83.79 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 83.55 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 82.03 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 80.97 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 80.71 |
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-47 Score=338.15 Aligned_cols=281 Identities=58% Similarity=0.962 Sum_probs=252.8
Q ss_pred ccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHH
Q 020848 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 93 (320)
Q Consensus 14 ~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~ 93 (320)
++.++.++++.++++.|++|+++|.||+++..++.....++.+++|+++++++.+.+.|++++++++|..+.. +...+
T Consensus 31 ~~~~~~~~~~~~~~~~TngC~~~C~fC~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~--~~~~~ 108 (312)
T d1r30a_ 31 HFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH--ERDMP 108 (312)
T ss_dssp HSCTTCCEEEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC--TTTHH
T ss_pred HcCCCEEEEeeeeEeeCCCCCCcCCcCCCCccCCCCCccccccchHHHHHHHHHHHHcCCEEEEEccCCCCCc--hhhHH
Confidence 3444666677777667999999999999876544333445668999999999999999999999998765432 35678
Q ss_pred HHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE
Q 020848 94 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 94 ~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
.+.++++.+++..+.+.++.+.++++.++.|+++|++.+.+++||.++.+..+.++.++++++++++.++++|+++++++
T Consensus 109 ~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i~~~iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~ 188 (312)
T d1r30a_ 109 YLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGG 188 (312)
T ss_dssp HHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCE
T ss_pred HHHHHHHhcccccceeeeccccchHHHHHHhhcccceeEecccchhhhhhccCCCCCCHHHHHHHHHHHHHhccceecce
Confidence 89999999888888888899999999999999999999999999997788888889999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChh
Q 020848 174 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMP 253 (320)
Q Consensus 174 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~ 253 (320)
|+|++|+.+|+.+++..+++++.++..++++.|.|.|||++++.++++.+++++++|++|+++|+..++++++|+++.+.
T Consensus 189 i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~ 268 (312)
T d1r30a_ 189 IVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQ 268 (312)
T ss_dssp EECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHH
T ss_pred EecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCHH
Confidence 99999999999999999999986677899999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCC
Q 020848 254 EQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 254 ~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~ 296 (320)
.+..+|.+|||+++.|+.++|++|++++++++||+++||+|++
T Consensus 269 ~~~~~L~~Gan~~~~~~~~~t~~~~~~~~~~~~i~~~G~~P~~ 311 (312)
T d1r30a_ 269 TQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQ 311 (312)
T ss_dssp HHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHhcCCcEEEecCccccCCCCCHHHHHHHHHHcCCCcCC
Confidence 8899999999999999889999999999999999999999986
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.3e-21 Score=177.04 Aligned_cols=209 Identities=13% Similarity=0.155 Sum_probs=156.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.|+++.++|+.+|.||.+............ .-.+.+.++++.... ..+..++++||++ +.-.+..+..+++.++
T Consensus 51 sLYiHiPFC~~~C~yC~~~~~~~~~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTP-t~L~~~~l~~ll~~l~ 128 (441)
T d1olta_ 51 SLYVHIPFCHKLCYFCGCNKIVTRQQHKAD-QYLDALEQEIVHRAPLFAGRHVSQLHWGGGTP-TYLNKAQISRLMKLLR 128 (441)
T ss_dssp EEEEEECEESSCCTTCCSSCEECSCTHHHH-HHHHHHHHHHHHHGGGGTTCCEEEEEEEESCG-GGSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCCCCcCeeecCCCcchHH-HHHHHHHHHHHHhhHhcCCCccceeEecCCCc-CCCCHHHHHHHHHHHh
Confidence 335578899999999988643221111100 113555555554332 2356788887753 3322444555555555
Q ss_pred Hhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEE
Q 020848 101 DIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGI 174 (320)
Q Consensus 101 ~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i 174 (320)
..... ..+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.+++.++++.+++.|+. +++++|
T Consensus 129 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI 208 (441)
T d1olta_ 129 ENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLI 208 (441)
T ss_dssp HHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred hhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhcccceeecccc
Confidence 43322 223 5677888999999999999999999999999 99999999999999999999999999997 999999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-----CCCCCHHHHHHHHHHHHHhCC
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-----QKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-----~~~~~~~e~~~~~a~~R~~~p 237 (320)
+|+ |+|.+++.+.++.+.+++ +++|++++|...|++.... ...++.++.++++..+...+.
T Consensus 209 ~GlPgqT~~~~~~tl~~~~~l~--pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~ 275 (441)
T d1olta_ 209 YGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 275 (441)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHhhC--CCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHHH
Confidence 999 999999999999999998 8999999999888775532 345778888888877766553
|
| >d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: MoCo biosynthesis proteins domain: Molybdenum cofactor biosynthesis protein A MoaA species: Staphylococcus aureus [TaxId: 1280]
Probab=99.75 E-value=7.2e-17 Score=142.89 Aligned_cols=204 Identities=22% Similarity=0.284 Sum_probs=149.7
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCC---CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDT---GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~---~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~ 92 (320)
|++.+.. .-|. .|+.||++|.||........ .......|+.|++.+.++.+.+.|+..+.++| |||+.+
T Consensus 7 ~~r~~~~-l~ie-iT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~~~v~~~G------GEp~l~ 78 (327)
T d1tv8a_ 7 LGRPIRD-LRLS-VTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITG------GEPLMR 78 (327)
T ss_dssp TSCBCCE-EEEE-CCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEES------SCGGGS
T ss_pred CCCccCc-EEEE-eccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCCeEEEeCC------Cccccc
Confidence 4555532 2356 69999999999965432111 11233458999999999999999999988876 568888
Q ss_pred HHHHHHHHHhhhc-Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC-CCCHHHHHHHHHHHHHcCC
Q 020848 93 NQILEYVKDIRDM-GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGI 167 (320)
Q Consensus 93 ~~l~~~i~~~k~~-~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi 167 (320)
+++.+.+.++.+. +.. +.+|++.++++.++.|+++|++.+.+++++. ++.+..+++ +..++...++++.+.++|+
T Consensus 79 ~~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~~~~~g~ 158 (327)
T d1tv8a_ 79 RDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGL 158 (327)
T ss_dssp TTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHhhhccccccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheeeccccchhhhHHHHHHHcCC
Confidence 8899888887644 333 3455667899999999999999999999999 889988776 4589999999999999999
Q ss_pred eeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC-CCCCCCCCCCCHHHHHHHHH
Q 020848 168 NVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK-GTPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 168 ~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~-gt~~~~~~~~~~~e~~~~~a 230 (320)
.+.+.+++-.+.+.+++.+.++++.+++ .+ +.+..+.+.. +.........+.++......
T Consensus 159 ~~~~~~~v~~~~n~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (327)
T d1tv8a_ 159 NVKVNVVIQKGINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE 219 (327)
T ss_dssp EEEEEEEECTTTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHH
T ss_pred CcceeEEEecCccccccHHHHHHHHhhc--cc-cceeeeecccCcccccccccccHHHHHHHHH
Confidence 9888887755788999999999999987 33 4444444433 22222233455565444443
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=97.52 E-value=0.0054 Score=51.19 Aligned_cols=215 Identities=11% Similarity=0.094 Sum_probs=135.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC---CchhHHHHHHHHHHhh----hcCceEEEeCCCCCHHHHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG---RKTNFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g---e~~~~~~l~~~i~~~k----~~~~~i~~~~g~l~~e~l~~L~~ 126 (320)
..++.|+.++.++.+.+.|++.|-++.+.....- .+.......+.++.+. ...+......+.-..+.+....+
T Consensus 24 ~~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 103 (289)
T d1nvma2 24 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQ 103 (289)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHH
Confidence 3489999999999999999999988643211100 0011112233333333 22344455567777888888888
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
.|++.+.+.... .+.+...+.++.+++.|+++...++.-..-+.+.+.+.++.+.++| ++.|.+
T Consensus 104 ~~~~~~r~~~~~-----------~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~I~l--- 167 (289)
T d1nvma2 104 AGARVVRVATHC-----------TEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYG--ATCIYM--- 167 (289)
T ss_dssp HTCCEEEEEEET-----------TCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHT--CSEEEE---
T ss_pred hcccceEEEeeh-----------hhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhcccc--ceeeee---
Confidence 888877664321 2233345677889999998777666644667788999999999998 555444
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCceeec--CCcccccChhHHHHHHHcCCceEee---CCccccCCCCCh
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRL--SAGRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDF 280 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~-p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~ 280 (320)
.+|- ....+.++.+++...+..+ |+..+.+ -.. .++.-.....++.+||+.+-. |-+ ..++....
T Consensus 168 ---~DT~----G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~-~g~a~an~l~A~~~G~~~id~si~GlG-~~~GN~~t 238 (289)
T d1nvma2 168 ---ADSG----GAMSMNDIRDRMRAFKAVLKPETQVGMHAHHN-LSLGVANSIVAVEEGCDRVDASLAGMG-AGAGNAPL 238 (289)
T ss_dssp ---ECTT----CCCCHHHHHHHHHHHHHHSCTTSEEEEECBCT-TSCHHHHHHHHHHTTCCEEEEBGGGCS-STTCBCBH
T ss_pred ---cchh----hcccchhHHHHHHHHHHHhcccccceeeechH-HHHHHHHHHHHHHhCCcEeeccccccC-CCCCCccH
Confidence 1221 2356888889888888776 4433322 111 111122335788999998722 210 12345678
Q ss_pred hHHHHHHHHcCCC
Q 020848 281 DADQLMFKVLGLT 293 (320)
Q Consensus 281 ~~~~~~i~~~G~~ 293 (320)
++++.++.+.|+.
T Consensus 239 E~lv~~l~~~g~~ 251 (289)
T d1nvma2 239 EVFIAVAERLGWN 251 (289)
T ss_dssp HHHHHHHHHHTCB
T ss_pred HHHHHHHHhcCCC
Confidence 8899999999985
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.18 E-value=0.031 Score=44.40 Aligned_cols=199 Identities=15% Similarity=0.160 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCC-CCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGM-LEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~-l~~e~l~~L~~aGld~v 132 (320)
++..+.++++.+.+.|++.+++ ..| +..-.-... .+. ++.+++ ..+++.++.=. -..+.++.+.++|.+.+
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg-~Fvpn~s~g-~~~---i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i 86 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDG-QFVPNISFG-ADV---VASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIM 86 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBS-SSSSCBCBC-HHH---HHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccC-cCCCccccC-HHH---HHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEE
Confidence 4456667777777889998776 333 221111112 223 334442 23332221111 12457999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+. .+. .+.++.+++.|+++++ .+......+++... +.. ++.+-++.-. ||.
T Consensus 87 ~~H~E~~----------~~~---~~~i~~i~~~g~~~Gi--al~p~T~~~~~~~~---l~~----id~vliM~V~--pG~ 142 (217)
T d2flia1 87 TIHTEST----------RHI---HGALQKIKAAGMKAGV--VINPGTPATALEPL---LDL----VDQVLIMTVN--PGF 142 (217)
T ss_dssp EEEGGGC----------SCH---HHHHHHHHHTTSEEEE--EECTTSCGGGGGGG---TTT----CSEEEEESSC--TTC
T ss_pred Eeccccc----------cCH---HHHHHHHHhcCCeEEE--EecCCcchhHHHhH---Hhh----cCEEEEEEEc--Ccc
Confidence 9988774 122 4567788888877644 33233333333322 222 4666666654 454
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
.-+...+...+.+.++........++..+.+.+| +..+.......+||+.++.|..+... .++.+.++-+++
T Consensus 143 ~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGG---In~~~i~~l~~aGad~~V~Gsaif~~--~d~~~~i~~lr~ 214 (217)
T d2flia1 143 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGG---VDNKTIRACYEAGANVFVAGSYLFKA--SDLVSQVQTLRT 214 (217)
T ss_dssp SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESS---CCTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhcCCCeEEEEeCC---CCHHHHHHHHHCCCCEEEEchHHhCC--CCHHHHHHHHHH
Confidence 3222222223332222222222234444555543 22333456778999999999644432 355555555543
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.16 E-value=0.045 Score=43.81 Aligned_cols=206 Identities=13% Similarity=0.116 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+...+.++++.+.+.|++.+++ ..|..-+. -..-..+++.++..-...+++..-. .-..+.++.+.++|.+.+.
T Consensus 20 ~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn--~t~~~~~v~~i~~~t~~~~dvHLMv-~~P~~~i~~~~~~g~~~i~ 96 (230)
T d1rpxa_ 20 ANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN--ITIGPLVVDSLRPITDLPLDVHLMI-VEPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC--BCCCHHHHHHHGGGCCSCEEEEEES-SSHHHHHHHHHHTTCSEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCc--cccChHHHhhhhhccCceeeeeeee-cchhhhHHHHhhcccceeE
Confidence 34556777788888889887765 44322111 1122333443332222223332111 1236779999999999999
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 213 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~ 213 (320)
+..|+. ...++ .+.++.+++.|+++++ .+......+.+...+ . .++.|-++.-. ||..
T Consensus 97 ~H~E~~--------~~~~~---~~~i~~ik~~g~k~Gi--alnp~T~~~~l~~~l---~----~vD~VllM~V~--PGf~ 154 (230)
T d1rpxa_ 97 VHCEQS--------STIHL---HRTINQIKSLGAKAGV--VLNPGTPLTAIEYVL---D----AVDLVLIMSVN--PGFG 154 (230)
T ss_dssp EECSTT--------TCSCH---HHHHHHHHHTTSEEEE--EECTTCCGGGGTTTT---T----TCSEEEEESSC--TTCS
T ss_pred Eecccc--------ccccH---HHHHHHHHHcCCeEEE--EeCCCCCHHHHHHHH---h----hCCEEEEEEec--CCcc
Confidence 987653 11123 4567788888877644 443343433333322 2 25677777654 4543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcC
Q 020848 214 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLG 291 (320)
Q Consensus 214 ~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G 291 (320)
-+...+...+.+.++........++..|.+.+| +..+.-.....+||+.++.|..+... .++.+.++-++.+.
T Consensus 155 GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGG---In~~~i~~l~~~Gad~~V~GS~if~~--~d~~~~i~~lk~~~ 227 (230)
T d1rpxa_ 155 GQSFIESQVKKISDLRKICAERGLNPWIEVDGG---VGPKNAYKVIEAGANALVAGSAVFGA--PDYAEAIKGIKTSK 227 (230)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESS---CCTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHTCC
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCceEEEEECC---cCHHHHHHHHHcCCCEEEEChHHHCC--CCHHHHHHHHHHhc
Confidence 222222222332222222223334555555543 33333456778999999999644432 35777777777654
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=95.78 E-value=0.43 Score=39.84 Aligned_cols=222 Identities=13% Similarity=0.031 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCC-----------HHHHHHHHH
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLE-----------KHQAIELKK 126 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~-----------~e~l~~L~~ 126 (320)
-+.++.++...+.|++++++..-+....+ ......++++++.+. +..+++..-.|..+ .|.+++|.+
T Consensus 48 GdP~~~a~~~~~~gaDeL~ivDidas~~~-~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~ 126 (323)
T d1jvna1 48 GKPVQLAQKYYQQGADEVTFLNITSFRDC-PLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR 126 (323)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CC-CGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEECcCCCCC-cCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHH
Confidence 46677788888899999998642211112 122345778888876 56788888878755 577899999
Q ss_pred hccCeeccCcccc--HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeeeEEEE---------------------------
Q 020848 127 AGLTAYNHNLDTS--REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIG--------------------------- 176 (320)
Q Consensus 127 aGld~v~i~let~--~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~G--------------------------- 176 (320)
+|+|+|.++-... |+.+..+.. ..+..-+.+..+..-..-+-+.+++.-+
T Consensus 127 ~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
T d1jvna1 127 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCW 206 (323)
T ss_dssp HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEE
T ss_pred cCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccCCCcccee
Confidence 9999999986665 566655543 2343333333333322223344443221
Q ss_pred -----eC---CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccc
Q 020848 177 -----LG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV 248 (320)
Q Consensus 177 -----lg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~ 248 (320)
.| .+.-++.+.+..+.++| +-.+-+.. +-..||.- .++.+- +...+...+-+ +-+++|-.
T Consensus 207 y~v~~~gg~~~t~~~l~~~i~~~~~~G--~GEIlltd-IdrDGt~~----G~D~el----~~~i~~~~~iP-iIasGGi~ 274 (323)
T d1jvna1 207 YQCTIKGGRESRDLGVWELTRACEALG--AGEILLNC-IDKDGSNS----GYDLEL----IEHVKDAVKIP-VIASSGAG 274 (323)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTT--CCEEEECC-GGGTTTCS----CCCHHH----HHHHHHHCSSC-EEECSCCC
T ss_pred EEEEEcCCeEecCchHHHHhhhhhccC--cceeEEEe-eccccccc----ccchhH----HHHHHHhCCCC-EEEECCCC
Confidence 11 12225788888889988 44444433 33456642 344433 32333333322 33455443
Q ss_pred ccChhHHHHHH-HcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCC
Q 020848 249 RFSMPEQALCF-LAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 249 ~~~~~~~~~~~-~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~ 296 (320)
++ .+. ..++ ..+++.+..|. .+....-++.+..+.+.+.|+.+..
T Consensus 275 s~-~di-~~ll~~~~v~gv~~gs-~~~~~~~si~elK~~L~~~~i~vR~ 320 (323)
T d1jvna1 275 VP-EHF-EEAFLKTRADACLGAG-MFHRGEFTVNDVKEYLLEHGLKVRM 320 (323)
T ss_dssp SH-HHH-HHHHHHSCCSEEEESH-HHHTTSCCHHHHHHHHHHTTCCCCC
T ss_pred CH-HHH-HHHHHhCCCeEEEEhh-HHHcCCCCHHHHHHHHHHCCCccCC
Confidence 32 222 2234 35788888886 4455667899999999999998743
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.65 E-value=0.065 Score=42.58 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCce--EEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
+...+.++++.+.+.|++.+++ ..|...+ . -..-..+.+.++..-+..++ +++.+ ..+.++.+.++|.+.+
T Consensus 13 d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvp-n-~t~~~~~~~~i~~~t~~~~dvHLMv~~---P~~~i~~~~~~g~~~i 87 (221)
T d1tqja_ 13 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVP-N-ITIGPLIVDAIRPLTKKTLDVHLMIVE---PEKYVEDFAKAGADII 87 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-C-BCBCHHHHHHHGGGCCSEEEEEEESSS---GGGTHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCCccC-c-cccCcHhHHhhhhccCcceeeeEEEeC---HHHHHHHHhhccceEE
Confidence 4456777777777889998776 4432211 1 11223344444332222222 23222 2467999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+. ...+ ..+.+...++.|+++++. +......+++...+ .. ++.+-++.-.| |.
T Consensus 88 ~~H~E~~--------~~~~---~~~~~~~i~~~g~~~Gia--l~p~T~~~~l~~~l---~~----~d~vlvM~V~p--G~ 145 (221)
T d1tqja_ 88 SVHVEHN--------ASPH---LHRTLCQIRELGKKAGAV--LNPSTPLDFLEYVL---PV----CDLILIMSVNP--GF 145 (221)
T ss_dssp EEECSTT--------TCTT---HHHHHHHHHHTTCEEEEE--ECTTCCGGGGTTTG---GG----CSEEEEESSCC----
T ss_pred EEeeccc--------cChh---hHHHHHHHHHCCCCEEEE--ecCCCcHHHHHHHH---hh----hcEEEEEEecC--CC
Confidence 9987653 0112 356677778888766544 33343444443333 32 45666666544 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHc
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVL 290 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~ 290 (320)
.=+...+...+.+.++....+.--++..|.+.+| +..+.-.....+||+.++.|..+.. ..++.+.++-++.+
T Consensus 146 ~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGG---In~~~i~~l~~~Gad~~V~GS~if~--~~d~~~~i~~lr~~ 218 (221)
T d1tqja_ 146 GGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG---LKPNNTWQVLEAGANAIVAGSAVFN--APNYAEAIAGVRNS 218 (221)
T ss_dssp --CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESS---CCTTTTHHHHHHTCCEEEESHHHHT--SSCHHHHHHHHHTC
T ss_pred CCcccchhhHHHHHHHHhhhhccccceEEEEECC---cCHHHHHHHHHcCCCEEEEChHHhC--CCCHHHHHHHHHhc
Confidence 2222222233443333333444445555666544 2222235567899999999864443 23577777766654
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=95.64 E-value=0.22 Score=40.48 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
..+++++++.++.+.+.|++-|-+++-..-++.++ ..++.+...++.+++.++.+ +......+.+++-.++|++
T Consensus 22 ~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~i--SIDT~~~eVa~~al~~Ga~ 99 (264)
T d1ad1a_ 22 FNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKI--SVDTFRSEVAEACLKLGVD 99 (264)
T ss_dssp TCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEE--EEECSCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCccc--chhhhhHHHHHHHHhcCCc
Confidence 36899999999999999999999987544444333 34566777777777655544 4456788999999999999
Q ss_pred eec-c
Q 020848 131 AYN-H 134 (320)
Q Consensus 131 ~v~-i 134 (320)
.|+ +
T Consensus 100 iINDV 104 (264)
T d1ad1a_ 100 IINDQ 104 (264)
T ss_dssp EEEET
T ss_pred Eeecc
Confidence 888 5
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.26 E-value=0.18 Score=39.83 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCC-CCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLG-MLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g-~l~~e~l~~L~~aGld~v 132 (320)
+.-.+.++++.+.+.|++.+++ ..|...+ . -..-.+. ++.+++ ....+.++.= .-..+.++.+.++|.+.+
T Consensus 12 d~~~l~~ei~~l~~~~~d~iHiDimDg~Fvp-n-~t~~~~~---i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I 86 (220)
T d1h1ya_ 12 DFANLAAEADRMVRLGADWLHMDIMDGHFVP-N-LTIGAPV---IQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGF 86 (220)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-C-BCBCHHH---HHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCcccc-c-cccCchh---hhhhhhhcchhhhhHHHhcchhhhhHHhhhccccee
Confidence 3456777777778889998776 4432211 1 1121333 334442 2333222111 123467999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+. ..++ .+.++.+++.|+++++. +...-..+++...+ ..++ .++.+-++.-.| |.
T Consensus 87 ~~H~E~~---------~~~~---~~~i~~i~~~g~~~Gla--l~p~t~~~~~~~~l---~~~~-~~d~vlim~v~P--G~ 146 (220)
T d1h1ya_ 87 TFHIEVS---------RDNW---QELIQSIKAKGMRPGVS--LRPGTPVEEVFPLV---EAEN-PVELVLVMTVEP--GF 146 (220)
T ss_dssp EEEGGGC---------TTTH---HHHHHHHHHTTCEEEEE--ECTTSCGGGGHHHH---HSSS-CCSEEEEESSCT--TC
T ss_pred eeccccc---------chhH---HHHHHHHHHcCCCccee--eccccchhHHHHHH---hccc-ccceEEEEecCC--CC
Confidence 9988763 1122 35567778888776533 32343444454444 3332 145566655544 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
.-+...+ ..+..+..+|...|+..+.+.+| +..+.-.....+||+.++.|..+... .++.+.++.+++
T Consensus 147 ~GQ~f~~----~~l~kI~~l~~~~~~~~I~VDGG---In~~~i~~l~~aGad~~V~GS~if~~--~d~~~~i~~lr~ 214 (220)
T d1h1ya_ 147 GGQKFMP----EMMEKVRALRKKYPSLDIEVDGG---LGPSTIDVAASAGANCIVAGSSIFGA--AEPGEVISALRK 214 (220)
T ss_dssp SSCCCCG----GGHHHHHHHHHHCTTSEEEEESS---CSTTTHHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHH
T ss_pred cccccch----hhhHHHHHHHhcCCCceEEEEec---CCHHHHHHHHHCCCCEEEECHHHHCC--CCHHHHHHHHHH
Confidence 2221111 23444555677788877776654 23333456678999999999754432 344555544443
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=94.37 E-value=0.64 Score=38.09 Aligned_cols=213 Identities=12% Similarity=0.110 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEeC----C--CCCHHH----
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCTL----G--MLEKHQ---- 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~~----g--~l~~e~---- 120 (320)
++.++-++.++.+.+.|++.|-++++..+. .+ ...++.+.......+...+...... + ......
T Consensus 30 ~~~~~ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (303)
T d1rqba2 30 MAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLN-EDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRF 108 (303)
T ss_dssp CCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSC-CCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcChHHHHHHhc-CchHHHHHHHHhhhhhHHHHHHhcccccccccccchhhhHHH
Confidence 788888888999999999999886542110 00 0111222222222222222222211 1 112222
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 198 (320)
+......+.+.+.. .......+....+++.++..|..+...+.... ..+.+.+.+.++.+.+.| +
T Consensus 109 ~~~~~~~~~~~~r~-----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~ 175 (303)
T d1rqba2 109 VDKSAENGMDVFRV-----------FDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG--A 175 (303)
T ss_dssp HHHHHHTTCCEEEE-----------CCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHhhhhHHhh-----------hhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcC--C
Confidence 22222233333221 11234567778888889999987665554433 357888999999999998 6
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCceeecC--CcccccChhHHHHHHHcCCceEe---eCCcc
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLS--AGRVRFSMPEQALCFLAGANSIF---TGEKL 272 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~-p~~~i~~~--~g~~~~~~~~~~~~~~~Gan~~~---~~~~~ 272 (320)
+.+.+- +|- ....+.++.+++...+..+ |+..+.+- .. .++.-.....++.+||..+- .|-+
T Consensus 176 ~~i~l~------DT~----G~~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd-~Gla~AN~laA~~aG~~~id~ti~GlG- 243 (303)
T d1rqba2 176 DSIALK------DMA----ALLKPQPAYDIIKAIKDTYGQKTQINLHCHST-TGVTEVSLMKAIEAGVDVVDTAISSMS- 243 (303)
T ss_dssp SEEEEE------ETT----CCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCT-TSCHHHHHHHHHHTTCSEEEEBCGGGC-
T ss_pred cEEeec------Ccc----chhhhHHHHHHHHHHHhhcCCcccceeccCch-HHHHHHHHHHHHHcCCCEEEECCccCC-
Confidence 655542 221 2346888888888887665 55333221 11 12222234678899999872 2210
Q ss_pred ccCCCCChhHHHHHHHHcCCCc
Q 020848 273 LTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 273 ~~~~~~~~~~~~~~i~~~G~~p 294 (320)
..++..+.++++.+++++|+.+
T Consensus 244 ~~~GN~~te~lv~~L~~~g~~t 265 (303)
T d1rqba2 244 LGPGHNPTESVAEMLEGTGYTT 265 (303)
T ss_dssp STTSBCBHHHHHHHTTTSSEEC
T ss_pred CCCCCccHHHHHHHHHhcCCCC
Confidence 1235578899999999999764
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.98 E-value=0.39 Score=37.84 Aligned_cols=201 Identities=12% Similarity=0.088 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCC-CHHHHHHHHHhccCeec
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML-EKHQAIELKKAGLTAYN 133 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l-~~e~l~~L~~aGld~v~ 133 (320)
++-.+.++++.+.+.|++.+++ ..|..-+ .- .+-...++.++... .++++.++.=.. ..+.++.+.++|.+.+.
T Consensus 13 d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvp-n~-t~g~~~v~~i~~~~-~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~ 89 (221)
T d1tqxa_ 13 NISKLAEETQRMESLGAEWIHLDVMDMHFVP-NL-SFGPPVINNLKKYT-KSIFFDVHLMVEYPEKYVPLLKTSNQLTFH 89 (221)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-CB-CCCHHHHHHHGGGC-SSCEEEEEEESSCGGGGGGGCTTSSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECccCcCcC-cc-ccChHHHhhhhhcC-CchhhhhhHHhhhhhhhhhhhhhcCceeEE
Confidence 3446666777777889987665 4442111 10 11123333333322 123322211111 13346677788887666
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 213 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~ 213 (320)
+..++ .+..+.++.++.+++.|+++++.+- .....+.+... +..-. ++.+-++.-.| |..
T Consensus 90 ~~~~~-----------~~~~~~~~~i~~i~~~g~~~Gial~--p~t~~~~~~~~---l~~~~--~d~vlim~V~p--G~~ 149 (221)
T d1tqxa_ 90 FEALN-----------EDTERCIQLAKEIRDNNLWCGISIK--PKTDVQKLVPI---LDTNL--INTVLVMTVEP--GFG 149 (221)
T ss_dssp GGGGT-----------TCHHHHHHHHHHHHTTTCEEEEEEC--TTSCGGGGHHH---HTTTC--CSEEEEESSCT--TCS
T ss_pred eehhc-----------cccchhhHHHHHHHhcCCeEEEeec--cccccccchhh---ccccc--ccEEEEEeecc--ccc
Confidence 54322 3455567888899999977655433 23343343333 32211 45666666544 432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 214 LQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 214 ~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
-+... + +.+..+..+|...|+..+.+.+| +..+.-.....+||+.++.|..+... .++.+.++-+++
T Consensus 150 GQ~f~---~-~~l~KI~~lr~~~~~~~I~VDGG---In~~~i~~l~~aGad~iV~GS~if~~--~d~~~~i~~Lr~ 216 (221)
T d1tqxa_ 150 GQSFM---H-DMMGKVSFLRKKYKNLNIQVDGG---LNIETTEISASHGANIIVAGTSIFNA--EDPKYVIDTMRV 216 (221)
T ss_dssp SCCCC---G-GGHHHHHHHHHHCTTCEEEEESS---CCHHHHHHHHHHTCCEEEESHHHHTC--SSHHHHHHHHHH
T ss_pred ccccC---c-chhHHHHHHHHhcCCcceEEEcc---cCHHhHHHHHHcCCCEEEEChHHHCC--CCHHHHHHHHHH
Confidence 11111 1 23455556677888877766543 34444466778999999999644432 345555555554
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=1.5 Score=34.92 Aligned_cols=206 Identities=13% Similarity=0.108 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.++.++.+.+.|++++++..-.... .......++++.+. ..++++..-.|..+.+.++.|.++|+++|.++-...
T Consensus 32 P~~~a~~~~~~g~dei~ivDld~~~----~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~ 107 (253)
T d1thfd_ 32 PVELGKFYSEIGIDELVFLDITASV----EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAV 107 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSS----SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeecccc----cCcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEEChHHh
Confidence 3445666677899999987532211 23345566777766 557888899999999999999999999999975433
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--------EEEeCC---CHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGG--------IIGLGE---AEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--------i~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
.+++...+..+..-..-+-+.+++ ++..+. +.-++.+.+..+.+++ +..+-+.. +-
T Consensus 108 ----------~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~td-I~ 174 (253)
T d1thfd_ 108 ----------ENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRG--AGEILLTS-ID 174 (253)
T ss_dssp ----------HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTT--CSEEEEEE-TT
T ss_pred ----------hChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhcc--CCEEEEEE-ec
Confidence 112222222333222112222221 222221 2234677777888887 44443332 23
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
..||.- .++.+- ++. .+...+- .+-+++|-.+. .+. ...+..|++.++.|. .+....-++++..+.++
T Consensus 175 ~dGt~~----G~d~~l-l~~---i~~~~~~-pvi~~GGv~s~-~di-~~l~~~g~~gvivgs-al~~~~~~~~~~k~~l~ 242 (253)
T d1thfd_ 175 RDGTKS----GYDTEM-IRF---VRPLTTL-PIIASGGAGKM-EHF-LEAFLAGADAALAAS-VFHFREIDVRELKEYLK 242 (253)
T ss_dssp TTTSCS----CCCHHH-HHH---HGGGCCS-CEEEESCCCSH-HHH-HHHHHTTCSEEEESH-HHHTTCSCHHHHHHHHH
T ss_pred ccCccC----Cccccc-ccc---ccccccc-eEEEecCCCCH-HHH-HHHHHCCCCEEEEch-HHHcCCCCHHHHHHHHH
Confidence 346542 344432 222 2223322 23344443332 222 344678999998887 45556678999999999
Q ss_pred HcCCCcC
Q 020848 289 VLGLTPK 295 (320)
Q Consensus 289 ~~G~~p~ 295 (320)
+.|+.+.
T Consensus 243 ~~~i~vr 249 (253)
T d1thfd_ 243 KHGVNVR 249 (253)
T ss_dssp HTTCCCC
T ss_pred HCCCcEe
Confidence 9998654
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=1.1 Score=36.41 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
..+++++++.++.+.+.|+.-+-++|-.+-++..+ ..+..+...++.++ +.++.+ +......+.+++-.++|+
T Consensus 34 ~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~i--SIDT~~~eVa~~al~~Ga 111 (282)
T d1ajza_ 34 HNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWI--SVDTSKPEVIRESAKVGA 111 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEE--EEECCCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccceE--EEEecChHHHHHHHhcCc
Confidence 36899999999999999999998987554444333 34567788888876 445443 445577888888888998
Q ss_pred Ceecc-C-ccccHHHHh---h-------hCC-C-----------CC-----HHHHHHHHHHHHHcCCe---eeeeEEEEe
Q 020848 130 TAYNH-N-LDTSREFYS---K-------IIT-T-----------RS-----YDERLETLKHVREAGIN---VCSGGIIGL 177 (320)
Q Consensus 130 d~v~i-~-let~~~~~~---~-------i~~-~-----------~~-----~~~~l~~i~~a~~~Gi~---v~~~~i~Gl 177 (320)
+.|+= + +.. ++.++ . ++. + .+ .+...+.++.+.+.|+. +-++-=+|+
T Consensus 112 ~iINDvsg~~~-~~~~~~va~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGF 190 (282)
T d1ajza_ 112 HIINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGF 190 (282)
T ss_dssp CEECCTTTTCS-TTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTS
T ss_pred eEEechhhccc-chhHHHhhccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCc
Confidence 87762 2 211 11111 1 110 0 01 24445566777788983 666666667
Q ss_pred CCCHHHHHHHHHHHhcC
Q 020848 178 GEAEEDRVGLLHTLATL 194 (320)
Q Consensus 178 get~ed~~~~l~~l~~l 194 (320)
|-+.++-.+++..+..+
T Consensus 191 gK~~~~n~~ll~~l~~~ 207 (282)
T d1ajza_ 191 GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp SCCHHHHHHHHHTGGGG
T ss_pred CCChhhhHHHHhhcchh
Confidence 77877767766665554
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.64 E-value=1.9 Score=34.28 Aligned_cols=205 Identities=15% Similarity=0.093 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.++.++.+.+.|++++++..-.... ...+...++++.+. ...+++.+..|..+.+.++.|.++|+++|.++-...
T Consensus 34 P~~~a~~~~~~gadei~ivDl~~~~----~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~ 109 (252)
T d1h5ya_ 34 PVEMAVRYEEEGADEIAILDITAAP----EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV 109 (252)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCCCT----TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEeccccc----cccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhhcCCcEEEeccccc
Confidence 3455666778999999887532221 12234445566555 557888899999999999999999999998864332
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE--------EEeCCC---HHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGI--------IGLGEA---EEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i--------~Glget---~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
. +++...+..+..-..-+-+.+++- +-.+.. .-+..+.++.+.+++ +..+-+.. +.
T Consensus 110 ----~------~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~td-I~ 176 (252)
T d1h5ya_ 110 ----R------NPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELG--AGEILLTS-ID 176 (252)
T ss_dssp ----H------CTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHT--CSEEEEEE-TT
T ss_pred ----C------CcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcC--CCEEEEEe-ec
Confidence 1 122222222222211122333332 111211 114556677777776 44443332 33
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
..||. ..++.+- ++.+ +...+- .+-+++|-.++ .+. ......|++.+..|. .+..+.-+.++..+.++
T Consensus 177 ~dG~~----~G~d~~~-~~~i---~~~~~~-pii~~GGv~~~-~di-~~l~~~g~~gv~~gs-~l~~~~~~~~~lk~~l~ 244 (252)
T d1h5ya_ 177 RDGTG----LGYDVEL-IRRV---ADSVRI-PVIASGGAGRV-EHF-YEAAAAGADAVLAAS-LFHFRVLSIAQVKRYLK 244 (252)
T ss_dssp TTTTC----SCCCHHH-HHHH---HHHCSS-CEEEESCCCSH-HHH-HHHHHTTCSEEEESH-HHHTTSSCHHHHHHHHH
T ss_pred ccCcc----CCcCHHH-HHHH---HHhcCC-CEEEecCCCCH-HHH-HHHHHCCCCEEEEhh-HHHcCCCCHHHHHHHHH
Confidence 44654 2344442 3322 233333 23344443332 233 234567899998886 44556678999999999
Q ss_pred HcCCCc
Q 020848 289 VLGLTP 294 (320)
Q Consensus 289 ~~G~~p 294 (320)
+.|+.+
T Consensus 245 ~~~i~v 250 (252)
T d1h5ya_ 245 ERGVEV 250 (252)
T ss_dssp HTTCBC
T ss_pred HcCCcc
Confidence 999876
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.81 E-value=2.2 Score=34.36 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
...+.+++++.++.+.+.|++-+-++|-.+-++.++ ..+..+...++.+++.++.+ +......+.+++..++|+
T Consensus 20 ~~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~is~~eE~~Rl~p~i~~~~~~~~~i--SIDT~~~~Va~~al~~Ga 97 (270)
T d1eyea_ 20 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITV--SIDTMRADVARAALQNGA 97 (270)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCE--EEECSCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEeeechhhcccccceeeeecccceee--chHhhhHHHHHHHHhcCC
Confidence 336899999999999999999998987444443322 34566777777777666554 345577899999999999
Q ss_pred Ceec
Q 020848 130 TAYN 133 (320)
Q Consensus 130 d~v~ 133 (320)
+.|+
T Consensus 98 ~iIN 101 (270)
T d1eyea_ 98 QMVN 101 (270)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 9887
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=91.16 E-value=0.25 Score=39.49 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-CchhHHHHHHHHHHhhhcCceE--EEeCCCCC-----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIRDMGMEV--CCTLGMLE-----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g-e~~~~~~l~~~i~~~k~~~~~i--~~~~g~l~-----~e~l~~L~~a 127 (320)
-+.|+..+.++.+.+.|+++|+-.- ..+.+ +....+.+-++++.+++.|+++ -+++..+. .+.+..|++.
T Consensus 14 ~~~e~~~~yi~~a~~~Gf~~iFTSL--~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~l 91 (244)
T d1x7fa2 14 STKEKDMAYISAAARHGFSRIFTCL--LSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAEL 91 (244)
T ss_dssp SCHHHHHHHHHHHHTTTEEEEEEEE--CCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecC--ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHC
Confidence 3578888999999999998886421 12222 2245677888999999999885 45665543 3567899999
Q ss_pred ccCeeccC
Q 020848 128 GLTAYNHN 135 (320)
Q Consensus 128 Gld~v~i~ 135 (320)
|++.+.++
T Consensus 92 Gi~glRlD 99 (244)
T d1x7fa2 92 GADGIRLD 99 (244)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99988775
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.49 Score=37.54 Aligned_cols=132 Identities=11% Similarity=0.170 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe----------cccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHh
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMG----------AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~----------~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~a 127 (320)
.+++++.+.. ..-..++|+ +|+. -....+.|.++++.+++.|++++.=.. -+.++++..++.
T Consensus 75 ~~e~i~ia~~---~kP~qvtLVPe~r~elTTegGld----~~~~~~~L~~~i~~l~~~girvSLFiD-pd~~~i~~a~~l 146 (242)
T d1m5wa_ 75 TEEMLAIAVE---TKPHFCCLVPEKRQEVTTEGGLD----VAGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEV 146 (242)
T ss_dssp SHHHHHHHHH---HCCSEEEECCCCSSCSSCCSCCC----SGGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHT
T ss_pred chhHHHHHHH---hccceEEEeecCccccCcCCcee----ehhhHHHHHHHHHHHHhcCCeEEEEec-cchhhHHHHhhc
Confidence 3455555543 334578886 2221 123568899999999988988643222 368999999999
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.|+|-+.--.+.+.+..-....-++++.++.+.+++.|+.+. .|+|-+.+.+.. +..++ .+..+++.-+
T Consensus 147 Gad~IElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn----AGHgLn~~Nl~~----i~~ip-~i~EvsIGHa 216 (242)
T d1m5wa_ 147 GAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVN----AGHGLTYHNVKA----IAAIP-EMHELNIGHA 216 (242)
T ss_dssp TCSEEEEECHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEE----EESSCCTTTHHH----HHTCT-TEEEEEECHH
T ss_pred CcceeeeecccccccccchhhHHHHHHHHHHHHHHHhcCCccc----CCCCcCccchHH----HhcCC-CCeEEeccHH
Confidence 9999887543321111110001134566777788888887764 467766555532 23443 2445555443
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=90.75 E-value=1.7 Score=35.05 Aligned_cols=137 Identities=14% Similarity=0.241 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++-|-+++-.+-++.++ ...+.+...++.+++ .++.+ +......+.+++-.++|++
T Consensus 39 ~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~rl~p~i~~~~~~~~~~i--SIDT~~~~Va~~al~~G~~ 116 (273)
T d1tx2a_ 39 NEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPI--SIDTYKAEVAKQAIEAGAH 116 (273)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCE--EEECSCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeeceeccccccccCHHHHHHhhchhHHhhhccceEEE--ehHHhhHHHHHHHHHcCCe
Confidence 5789999999999999999998987544444333 334556666666653 34443 4456778999999999999
Q ss_pred eec-c-Cc--ccc-HHHHhhhCC--------CC-----C----HHHHHHHHHHHHHcCCe---eeeeEEEEeCCCHHHHH
Q 020848 131 AYN-H-NL--DTS-REFYSKIIT--------TR-----S----YDERLETLKHVREAGIN---VCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 131 ~v~-i-~l--et~-~~~~~~i~~--------~~-----~----~~~~l~~i~~a~~~Gi~---v~~~~i~Glget~ed~~ 185 (320)
.|+ + +. |.. .++...... +. . .....+.++.+.++|+. +-++.=+|++-+.++-.
T Consensus 117 iINDvsg~~~D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~ 196 (273)
T d1tx2a_ 117 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNL 196 (273)
T ss_dssp EEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHH
T ss_pred EEeccccccchhHHHHHHHhhcccccccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHH
Confidence 887 3 22 221 222221111 10 1 23344566777788885 44444345577877777
Q ss_pred HHHHHHhcC
Q 020848 186 GLLHTLATL 194 (320)
Q Consensus 186 ~~l~~l~~l 194 (320)
++++.+..+
T Consensus 197 ~ll~~i~~l 205 (273)
T d1tx2a_ 197 EAMRNLEQL 205 (273)
T ss_dssp HHHHTGGGG
T ss_pred HHHhhhccc
Confidence 777666554
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.84 E-value=1.2 Score=35.19 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+++.+..+...+.|++-|.-++|....++ ....+..+.+..+..++.+-.+.|..+.+.+..+.++|.+++.-|
T Consensus 145 L~~~~i~~a~~~a~~aGadFVKTSTG~~~~ga---t~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGtS 221 (234)
T d1n7ka_ 145 WDDKTLSLLVDSSRRAGADIVKTSTGVYTKGG---DPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEESCCSSSCCCC---SHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred cchHHHHHHHHHHHHhhhhheeecccccCCCC---CHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeecc
Confidence 78899999888888899987765554323223 234455555555544566777888999999999999999987653
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=89.48 E-value=3.7 Score=31.91 Aligned_cols=176 Identities=17% Similarity=0.224 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++.+.+.|+..+|+. |.+.+...+. ++ ++.+.+- .|..+ ..+.++..+.
T Consensus 17 ~t~~~i~~lc~~A~~~~~~aVcV~---------P~~v~~a~~~---l~--~vkv~tVigFP~G~~~~~~K~~E~~~Ai~~ 82 (225)
T d1mzha_ 17 LSEKEIEEFVLKSEELGIYAVCVN---------PYHVKLASSI---AK--KVKVCCVIGFPLGLNKTSVKVKEAVEAVRD 82 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEC---------GGGHHHHHHH---CS--SSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEC---------HHHHHHHHhh---cc--CCceEEEeccCCCCCcHHHHHHHHHHHHHc
Confidence 689999999999999999999883 4444433332 22 3443322 24322 2334555667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.|.+-+-++-. .+ ..+.|+.+.+-++...+.--...+.+|+-. --+++++....+.+.+-| .+.|.-
T Consensus 83 GAdEID~Vin~~-----~l-~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aG--adfiKT--- 151 (225)
T d1mzha_ 83 GAQELDIVWNLS-----AF-KSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAG--ADFIKT--- 151 (225)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHT--CSEEEC---
T ss_pred CCCeEEEeechh-----hh-hcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHHHcc--cceEee---
Confidence 888876644321 11 135788888878776653212223445544 347788999999998888 555442
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.|-+.. ...+++++..+.. ..-+...+..++|--.+ ......+.+|++++
T Consensus 152 ----STG~~~-~gat~e~v~~m~~---~~~~~~~iKasGGIrt~--~~a~~~i~~Ga~Ri 201 (225)
T d1mzha_ 152 ----STGFAP-RGTTLEEVRLIKS---SAKGRIKVKASGGIRDL--ETAISMIEAGADRI 201 (225)
T ss_dssp ----CCSCSS-SCCCHHHHHHHHH---HHTTSSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred ----cCCCCC-CCCCHHHHHHHHH---HhCCCceEECcCCCCCH--HHHHHHHHhchhhe
Confidence 333332 2355555333222 22344566666553332 23345678999987
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=87.79 E-value=2 Score=33.22 Aligned_cols=75 Identities=15% Similarity=0.279 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++.+++.+..+.+.+.|++-|.-++|..+. | ...+++.-+.+.++. .+.+-.+.|..+.+.+..|.++|.+++.-
T Consensus 129 L~~~ei~~a~~~a~~aGadfiKTSTG~~~~-g--at~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~l~aGa~riGt 203 (211)
T d1ub3a_ 129 FSPEEIARLAEAAIRGGADFLKTSTGFGPR-G--ASLEDVALLVRVAQG-RAQVKAAGGIRDRETALRMLKAGASRLGT 203 (211)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCSSSSC-C--CCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHhccceEEecCCCCCC-C--CCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHHhhhHhcc
Confidence 688888888888888888777665553222 2 234444444444442 24455677888888888888888887764
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=87.67 E-value=1.7 Score=34.47 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC----CCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g----~l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+.=. ..| ....+.+.+++...+ ++++..+-. .-..+.++.|.+.|+++|.
T Consensus 71 ~~~M~~di~~~k~~G~dGvV~G~L~--~dg-~iD~~~~~~L~~~a~--~l~vTFHRAfD~~~d~~~al~~Li~lG~~rIL 145 (247)
T d1twda_ 71 FAAILEDVRTVRELGFPGLVTGVLD--VDG-NVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVL 145 (247)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCBC--TTS-SBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEC--CCC-CccHHHHHHHHHHhc--ccCeeeehhhhhhCCHHHHHHHHHhcCCCeEe
Confidence 3445556667788999999986421 112 355667777777666 344433321 1346779999999999986
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHH
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 189 (320)
-|=. ..+..+-++.++.+.+..-.. .+|.|-|-+.+.+.++++
T Consensus 146 TSGg-----------~~~a~~G~~~L~~L~~~a~~~--iIm~GgGI~~~Ni~~l~~ 188 (247)
T d1twda_ 146 TSGQ-----------KSDALQGLSKIMELIAHRDAP--IIMAGAGVRAENLHHFLD 188 (247)
T ss_dssp ECTT-----------SSSTTTTHHHHHHHHTSSSCC--EEEEESSCCTTTHHHHHH
T ss_pred ccCC-----------CCchhHHHHHHHHHHHhcCCc--EEEecCCCCHHHHHHHHH
Confidence 5411 111112234445554432112 278887776666666553
|
| >d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Zinc finger protein 64, ZFP68 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.63 E-value=0.076 Score=26.45 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q 020848 34 SEDCSYCPQSS 44 (320)
Q Consensus 34 ~~~C~fC~~~~ 44 (320)
|++|.||+|..
T Consensus 2 PFkC~~CsFDt 12 (29)
T d1x5wa2 2 PFKCNYCSFDT 12 (29)
T ss_dssp SEECSSSSCEE
T ss_pred Ccccceecccc
Confidence 57899999853
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=85.85 E-value=6.8 Score=30.87 Aligned_cols=148 Identities=15% Similarity=0.157 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-CchhHHHHHHHHHHhhhc--CceEEEeC------CC--CCHHHHHH-
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKDIRDM--GMEVCCTL------GM--LEKHQAIE- 123 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g-e~~~~~~l~~~i~~~k~~--~~~i~~~~------g~--l~~e~l~~- 123 (320)
.+.+++++.+..+...|++-+-+ +...- +....+++.+.++.+++. ++++..|. |. .+++...+
T Consensus 25 ~~~~~~~~~~~~~~~~~aD~vE~----RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l 100 (252)
T d1gqna_ 25 RDINSVKAEALAYREATFDILEW----RVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTL 100 (252)
T ss_dssp SSHHHHHHHHHHHTTSCCSEEEE----EGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCEEEE----EEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHH
Confidence 47899999999888888877655 22111 123467888888888843 56765543 32 35444333
Q ss_pred ---HHHhc-cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE-EEeCCCHHHHHHHHHHHhcCCCCC
Q 020848 124 ---LKKAG-LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-IGLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 124 ---L~~aG-ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i-~Glget~ed~~~~l~~l~~l~~~~ 198 (320)
+.++| +|.+-+.++..++ ...+.++.+++.|.++-...= +.-..+.+++.+.++.+.++| +
T Consensus 101 l~~~~~~~~~d~iDiEl~~~~~------------~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~g--a 166 (252)
T d1gqna_ 101 NRAAIDSGLVDMIDLELFTGDA------------DVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALG--A 166 (252)
T ss_dssp HHHHHHHSCCSEEEEEGGGCHH------------HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHcCCCceEeccccccHH------------HHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhC--C
Confidence 33446 5666665544322 223345566777876422221 111235689999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
+.+.+-. .+-+..+.++++...+
T Consensus 167 DivKia~------------~a~~~~D~~~ll~~~~ 189 (252)
T d1gqna_ 167 DIPKIAV------------MPQSKHDVLTLLTATL 189 (252)
T ss_dssp SEEEEEE------------CCSSHHHHHHHHHHHH
T ss_pred CeEEEEe------------cCCCHHHHHHHHHHHH
Confidence 6554422 1234666666665443
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=85.77 E-value=1.9 Score=33.03 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=47.1
Q ss_pred HHHcCCCEEEEecccCCC-CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 68 AKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 68 ~~~~g~~~i~l~~g~~~~-~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+.|+..+..+..+... ...+......++++..++ ..++++...-|..+.+.+.++.++|.|.+.++
T Consensus 135 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iG 204 (222)
T d1y0ea_ 135 AARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (222)
T ss_dssp HHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 445788777654321111 111223345567777776 56889889999999999999999999999987
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.74 E-value=3.1 Score=32.96 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe---------CCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~---------~g~l~~e~l~~L~~ 126 (320)
+++.++...++.+- .-++-+.|++|..... .-+.+.+.++..++.++.+..- .| .-++.++..++
T Consensus 23 lgl~~leD~Le~ag-~yID~~K~g~Gt~~l~----p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~qg-~~~~y~~~~~~ 96 (251)
T d1qwga_ 23 LPPKFVEDYLKVCG-DYIDFVKFGWGTSAVI----DRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG-KFDEFLNECEK 96 (251)
T ss_dssp CCHHHHHHHHHHHG-GGCSEEEECTTGGGGS----CHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh-hheeEEEecCceeeec----CHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcC-CHHHHHHHHHH
Confidence 67777777665433 3378888876542211 2234777888888878775432 23 25788999999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC-------CCHHHHHHHHHHHhcCCCCCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG-------EAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg-------et~ed~~~~l~~l~~l~~~~~ 199 (320)
.|++.|-+|--+. .-+.+++.+.|+.+.+.|+.+-+- +|.. -+.+++.+.++...+.| .+
T Consensus 97 lGf~~iEiSdg~~---------~i~~~~~~~~I~~~~~~G~~V~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeaG--A~ 163 (251)
T d1qwga_ 97 LGFEAVEISDGSS---------DISLEERNNAIKRAKDNGFMVLTE--VGKKMPDKDKQLTIDDRIKLINFDLDAG--AD 163 (251)
T ss_dssp HTCCEEEECCSSS---------CCCHHHHHHHHHHHHHTTCEEEEE--ECCSSHHHHTTCCHHHHHHHHHHHHHHT--CS
T ss_pred cCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCEEeec--ccCCCCCCccccCHHHHHHHHHHHHHCC--Cc
Confidence 9999998874332 336677788899999999875432 2331 24566677776666666 44
Q ss_pred ee
Q 020848 200 SV 201 (320)
Q Consensus 200 ~v 201 (320)
.|
T Consensus 164 ~V 165 (251)
T d1qwga_ 164 YV 165 (251)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=85.65 E-value=1.4 Score=35.63 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeC---CCCCHHHHHHHHHhccCeec
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTL---GMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~---g~l~~e~l~~L~~aGld~v~ 133 (320)
.+||.++.++.+.+.|.+-+++-+.. ..+++.+.+........++..+. +..+ +++|.+.|+.++.
T Consensus 165 gl~eai~R~~aY~eAGAD~vf~~~~~--------~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~---~~eL~~lGv~~v~ 233 (275)
T d1s2wa_ 165 GLDEALKRAEAYRNAGADAILMHSKK--------ADPSDIEAFMKAWNNQGPVVIVPTKYYKTP---TDHFRDMGVSMVI 233 (275)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCS--------SSSHHHHHHHHHHTTCSCEEECCSTTTTSC---HHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHhcCCCeeeecccc--------CcHHHHHHHHHhhcCCCCEEEecccccccH---HHHHHHcCCCEEE
Confidence 46777777777777787777664310 11122222222222233333332 2233 4567777888877
Q ss_pred cCcccc
Q 020848 134 HNLDTS 139 (320)
Q Consensus 134 i~let~ 139 (320)
++....
T Consensus 234 ~g~~~~ 239 (275)
T d1s2wa_ 234 WANHNL 239 (275)
T ss_dssp ECSHHH
T ss_pred EchHHH
Confidence 765443
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=85.63 E-value=1.6 Score=36.34 Aligned_cols=80 Identities=13% Similarity=0.014 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~ 133 (320)
.+.++.+..++.+.+.|++-+.+.+|......-........++.+.+| ..++++..+.+..+.+.++.+.+.| +|.|.
T Consensus 225 ~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~ 304 (337)
T d1z41a1 225 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 304 (337)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred cchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceeh
Confidence 678999999999999999988887654322110011122344455555 3467777776667899999988888 78888
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 305 ~g 306 (337)
T d1z41a1 305 IG 306 (337)
T ss_dssp EC
T ss_pred hh
Confidence 76
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=85.59 E-value=3.6 Score=32.81 Aligned_cols=45 Identities=7% Similarity=0.177 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 91 NFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
...++.+.++.+|+. +.++.+--|.-++++++.+.++|.|.+-++
T Consensus 184 ~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVG 229 (261)
T d1rd5a_ 184 VNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 229 (261)
T ss_dssp BCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred chhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEEC
Confidence 345677777777743 677888889999999999999999998887
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=85.22 E-value=2.1 Score=34.02 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=117.0
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 140 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~ 140 (320)
++.++.+.+.|++++++..-.... .......++++.+. ...+++....|..+.+.++.|.++|+++|.++-...
T Consensus 33 ~~~a~~~~~~g~dei~iiDl~~~~----~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~- 107 (251)
T d1ka9f_ 33 VEAARAYDEAGADELVFLDISATH----EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAV- 107 (251)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSST----TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH-
T ss_pred HHHHHHHHHcCCCEEEEEeccccc----ccchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEECchhh-
Confidence 445556677899999987532211 12345566777766 457888899999999999999999999998874332
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeE----------EEEeCC---CHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 141 EFYSKIITTRSYDERLETLKHVREAGIN-VCSGG----------IIGLGE---AEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 141 ~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~----------i~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
+ +++-..+. +...|-. +...+ ++..+. +.-++.+.+..+.+.+ +..+-+...
T Consensus 108 ---~------n~~~i~~~---~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~eii~tdi 173 (251)
T d1ka9f_ 108 ---R------RPELIREL---ADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELG--AGEILLTSM 173 (251)
T ss_dssp ---H------CTHHHHHH---HHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHT--CCEEEEEET
T ss_pred ---h------CHHHHHHH---HHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcC--CCEEEEEee
Confidence 1 12112222 2233432 21111 221222 1124567777777777 545444332
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHH
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
...||. ..++.+ +++. .....+-+ +-+++|-.+. .+. ...+..|++.++.|. .+..+.-+..+..+.
T Consensus 174 -~~dG~~----~G~d~~-l~~~---i~~~~~~p-ii~~GGv~~~-~dl-~~l~~~g~~gviig~-al~~g~~~~~~~k~~ 240 (251)
T d1ka9f_ 174 -DRDGTK----EGYDLR-LTRM---VAEAVGVP-VIASGGAGRM-EHF-LEAFQAGAEAALAAS-VFHFGEIPIPKLKRY 240 (251)
T ss_dssp -TTTTTC----SCCCHH-HHHH---HHHHCSSC-EEEESCCCSH-HHH-HHHHHTTCSEEEESH-HHHTTSSCHHHHHHH
T ss_pred -cccCcc----CCcchh-HHHH---HHhhccee-EEEecCCCCH-HHH-HHHHHCCCCEEEEhH-HHHcCCCCHHHHHHH
Confidence 234553 234443 2332 22333333 3344443332 222 445678999998886 555667789999999
Q ss_pred HHHcCCCcC
Q 020848 287 FKVLGLTPK 295 (320)
Q Consensus 287 i~~~G~~p~ 295 (320)
+.+.|+.+.
T Consensus 241 l~~~~i~vr 249 (251)
T d1ka9f_ 241 LAEKGVHVR 249 (251)
T ss_dssp HHHTTCCBC
T ss_pred HHHCCCccc
Confidence 999998653
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=84.45 E-value=8 Score=30.48 Aligned_cols=121 Identities=9% Similarity=0.042 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEEEecccCCCCCCchhHHHHHHHHHHhh----h--cCceEEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGST-RFCMGAAWRDTIGRKTNFNQILEYVKDIR----D--MGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~-~i~l~~g~~~~~ge~~~~~~l~~~i~~~k----~--~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
+++++.++.+..+.+.+.. .+.|- .+..+ ...+...+.+++++ . .++++...-...+.+.++++.+.|
T Consensus 89 ~~~~eai~~~~~L~~~~~~y~i~iE----qP~~~-~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i~~~ 163 (253)
T d1kcza1 89 VDIKAMADYIQTLAEAAKPFHLRIE----GPMDV-EDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNK 163 (253)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCEEEE----CSBCC-SSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEe----cCCCC-ccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHHHhC
Confidence 5778888887777665432 23332 11111 12334444444443 1 245666655567778888887776
Q ss_pred -cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCC
Q 020848 129 -LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 129 -ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~ 195 (320)
+|.+++.+ .+-......+++++.|++.|+.+ ++|. +||.......+......+
T Consensus 164 a~d~v~iK~----------~k~GGi~~al~~~~~a~~~Gi~~----~vg~~~~Et~~s~~a~~hla~A~~ 219 (253)
T d1kcza1 164 AGHMVQIKT----------PDLGGVNNIADAIMYCKANGMGA----YCGGTCNETNRSAEVTTNIGMACG 219 (253)
T ss_dssp CSSEEEECT----------GGGSSTHHHHHHHHHHHHTTCEE----EECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CcCeeeccc----------cccCCHHHHHHHHHHHHHcCCcE----EEcCccCCcchHHHHHHHHHHhcC
Confidence 67777754 33356778899999999999876 5553 899776644443333344
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.39 E-value=2.4 Score=31.69 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEe-------CC--CCCHHHHHHHHHh
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCT-------LG--MLEKHQAIELKKA 127 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~-------~g--~l~~e~l~~L~~a 127 (320)
.+.+...++.+.+.|++.+++-+. .|+ .-..+++ .++ |+. +.++ +| .++++..+.|++.
T Consensus 18 ~~~l~~a~~rA~Elgi~~iVvASt----sG~--TA~~~~e---~~~--g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~ 86 (190)
T d1vp8a_ 18 EETLRLAVERAKELGIKHLVVASS----YGD--TAMKALE---MAE--GLEVVVVTYHTGFVREGENTMPPEVEEELRKR 86 (190)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECS----SSH--HHHHHHH---HCT--TCEEEEEECCTTSSSTTCCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeC----CcH--HHHHHHH---Hhc--CCeEEEEecccCCCCCCcccCCHHHHHHHHHc
Confidence 344444456778899999998653 242 1222333 333 344 2222 22 3789999999999
Q ss_pred ccCeeccC--cccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 128 GLTAYNHN--LDTS-REFYSKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 128 Gld~v~i~--let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
|++.+..+ +.+. +.+.++...-...+-+-++++.+-..|++|
T Consensus 87 G~~V~t~tH~lSg~eR~is~kfgG~~p~EiiA~tLR~lfgqG~KV 131 (190)
T d1vp8a_ 87 GAKIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKV 131 (190)
T ss_dssp TCEEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred CCEEEEecccccchhhhhhhhcCCcCHHHHHHHHHHHHhCCCcEE
Confidence 99877643 5555 445555544444555556666443344443
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=84.37 E-value=8.5 Score=30.72 Aligned_cols=178 Identities=13% Similarity=0.087 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCC-------------CCCC---------chhHHHHHHHHHHhhhcCceEEEeCC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRD-------------TIGR---------KTNFNQILEYVKDIRDMGMEVCCTLG 114 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~-------------~~ge---------~~~~~~l~~~i~~~k~~~~~i~~~~g 114 (320)
+.+...+.++.+...|++.|-||.-... .... ....+++.++.+..++.++...+++
T Consensus 32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~- 110 (280)
T d2zdra2 32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTP- 110 (280)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCcccccc-
Confidence 6788899999999999999998842100 0000 1223556667777777788866654
Q ss_pred CCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhc
Q 020848 115 MLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT 193 (320)
Q Consensus 115 ~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~ 193 (320)
.+.+.+..+.+.|++.+-++--.. .+ +..++.+.+.+.+ +++.. +-+.+|+.+.+.++.+
T Consensus 111 -fd~~s~~~~~~~~~~~~KIaS~d~----------~n----~~Li~~i~k~~kp----iiiStG~s~~~EI~~av~~~~~ 171 (280)
T d2zdra2 111 -FSRAAALRLQRMDIPAYKIGSGEC----------NN----YPLIKLVASFGKP----IILSTGMNSIESIKKSVEIIRE 171 (280)
T ss_dssp -CSHHHHHHHHHHTCSCEEECGGGT----------TC----HHHHHHHHTTCSC----EEEECTTCCHHHHHHHHHHHHH
T ss_pred -chhhcccccccccccceeccchhc----------cc----cHhhhhhhhccCc----eeecccccchhHhhhhhhhhhh
Confidence 668889999999999877742110 11 3445666666654 36666 5689999999999887
Q ss_pred CCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 194 LPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 194 l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.+ .+.+-++-..-.| |+. .+--+..+...+..++...+-++.-..+ ......++..||..+
T Consensus 172 ~~--~~~~llhc~s~YP-t~~-------~~~nL~~i~~lk~~f~~~~iG~SdH~~g--~~~~~~Ava~GA~~I 232 (280)
T d2zdra2 172 AG--VPYALLHCTNIYP-TPY-------EDVRLGGMNDLSEAFPDAIIGLSDHTLD--NYACLGAVALGGSIL 232 (280)
T ss_dssp HT--CCEEEEECCCCSS-CCG-------GGCCTTHHHHHHHHCTTSEEEEECCSSS--SHHHHHHHHTTCCEE
T ss_pred cc--ccceEEEeeccCc-ccc-------ccccccccceeeccccccceeecCcccc--hhhHHHHHHCCCeEE
Confidence 65 3222111111111 121 2222445566666677655544421112 234467788899987
|
| >d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=84.21 E-value=1 Score=33.50 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.+++++.+ .+.+.+.+-++|.+.. ..+.+...++++.+|+.|.. +.+-.|....+....|+++|+|.+..
T Consensus 73 ~~~~e~v~---aa~~~~a~vvvicssd------~~y~~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~i~ 143 (163)
T d7reqb2 73 GTTAEIVE---AFKKSGAQVADLCSSA------KVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLF 143 (163)
T ss_dssp CCHHHHHH---HHHHHTCSEEEEECCH------HHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEEEC
T ss_pred CCcHHHHH---HHHhCCCCEEEEecCc------cchHHHHHHHHHHHHhcccceeEEEecCCCcccHHHHHhCCCCeEec
Confidence 57777654 4556788888887642 34556677788888876655 23344446677788999999987643
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=83.93 E-value=8.7 Score=30.44 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc-------------hhHHHHHHHHHHhhh-cCceEEEeCCC--CCHH
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRD-MGMEVCCTLGM--LEKH 119 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~-------------~~~~~l~~~i~~~k~-~~~~i~~~~g~--l~~e 119 (320)
+.|.-++.++.+.+.|++-+-|+-....+. ..| ...+.++++++.+++ ...++..-... +...
T Consensus 29 ~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~ 108 (261)
T d1rd5a_ 29 DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFR 108 (261)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchhhH
Confidence 678888888888999998888863211221 112 234678888888873 34443211110 1111
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~ 199 (320)
-+++++++|+|.+-+. | -.+++..+..+.+++.|+.. -.++-..-+++.+.+..+... .
T Consensus 109 ~~~~~~~~GvdG~Iip-D------------lp~eE~~~~~~~~~~~gl~~--I~lvaPtt~~~Ri~~i~~~a~------g 167 (261)
T d1rd5a_ 109 SLAKMKEAGVHGLIVP-D------------LPYVAAHSLWSEAKNNNLEL--VLLTTPAIPEDRMKEITKASE------G 167 (261)
T ss_dssp CTHHHHHTTCCEEECT-T------------CBTTTHHHHHHHHHHTTCEE--CEEECTTSCHHHHHHHHHHCC------S
T ss_pred HHHHHHhcCceeeeec-C------------ccHHHHHHHHHHHhccccce--EEEeccCCchhHHHHHHhcCc------c
Confidence 2567899999988762 1 12233345556778888753 233323334444444443332 1
Q ss_pred eeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHH-HHcCCceEeeCCcc
Q 020848 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC-FLAGANSIFTGEKL 272 (320)
Q Consensus 200 ~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~-~~~Gan~~~~~~~~ 272 (320)
.|.+....++.|... . . ..+..+.+...|.... . ++..| .++....+... ...||+.+++|..+
T Consensus 168 FvY~vs~~GvTG~~~---~-~-~~~~~~~i~~ik~~t~-~--Pi~vG-FGI~~~e~v~~~~~~gaDGvIVGSai 232 (261)
T d1rd5a_ 168 FVYLVSVNGVTGPRA---N-V-NPRVESLIQEVKKVTN-K--PVAVG-FGISKPEHVKQIAQWGADGVIIGSAM 232 (261)
T ss_dssp CEEEECSSCCBCTTS---C-B-CTHHHHHHHHHHHHCS-S--CEEEE-SCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred hhhhhhccCcccccc---c-c-hhHHHHHHHHhhhccC-C--CeEEE-cCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 233333333333321 1 1 1233555666666642 2 33223 23333333444 44589999999654
|
| >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FAD-linked oxidoreductase family: Methylenetetrahydrofolate reductase domain: Methylenetetrahydrofolate reductase species: Escherichia coli [TaxId: 562]
Probab=83.79 E-value=4.8 Score=32.23 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-ch-hHHHHHHHHHHhhhcCceEEEeC----CCCC-HHHHHHHH---
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KT-NFNQILEYVKDIRDMGMEVCCTL----GMLE-KHQAIELK--- 125 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-~~-~~~~l~~~i~~~k~~~~~i~~~~----g~l~-~e~l~~L~--- 125 (320)
.+.+++...+..+...|++.+++.+|+.+..+. |. .--+++++++......+.+...+ ..-+ +..++.|+
T Consensus 74 ~n~~~l~~~l~~~~~~GI~niL~l~GD~~~~~~~~~~~a~dlv~li~~~~~~~igva~~Peghp~~~~~~~~~~~lk~K~ 153 (275)
T d1b5ta_ 74 ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAKSAQADLLNLKRKV 153 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECCCCCCSSSCCCCCCHHHHHHHHHHHCCCEEEEEECTTCCTTCSCHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHhhCeEEEecCCCCCCCCCCcccHHHHHHHHHHHHhcCCceeecCCCCccchhHHHHHHHHHHHH
Confidence 677899999999999999999988887655432 32 23445555554432222222221 1112 34455554
Q ss_pred HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 126 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 126 ~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
++|.+.+.- + .--+.+.+.+-++.+++.|+.+ -+++|.
T Consensus 154 ~aGA~fiiT----------Q--~~fD~~~~~~~~~~~~~~gi~~--Pi~~GI 191 (275)
T d1b5ta_ 154 DAGANRAIT----------Q--FFFDVESYLRFRDRCVSAGIDV--EIIPGI 191 (275)
T ss_dssp HHTCCEEEE----------E--ECSCHHHHHHHHHHHHHTTCCS--CEEEEE
T ss_pred HhhcCeeee----------e--eeecHHHHHHHHHHHHHcCCCC--cccccc
Confidence 357765321 0 1235566667777788888753 334444
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=83.55 E-value=1.5 Score=32.66 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC---ceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG---MEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~---~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++|++.+.+. +.+.+-+++++.. + ...+.+.++++.+++.| +.+ +-.|...++..+.|+++|++.+
T Consensus 75 ~~~e~iv~aa~---~~~advI~iSs~~----~--~~~~~~~~l~~~L~~~g~~~v~V-ivGG~ip~~d~~~l~~~Gv~~i 144 (168)
T d7reqa2 75 QTPEETARQAV---EADVHVVGVSSLA----G--GHLTLVPALRKELDKLGRPDILI-TVGGVIPEQDFDELRKDGAVEI 144 (168)
T ss_dssp BCHHHHHHHHH---HHTCSEEEEEECS----S--CHHHHHHHHHHHHHHTTCTTSEE-EEEESCCGGGHHHHHHHTEEEE
T ss_pred CcHHHHHHHHH---ccCCCEEEEecCc----c--cchHHHHHHHHHHHhcCCCCeEE-EEeCCCCHHHHHHHHhCCCCEE
Confidence 58888887765 4678888887521 1 24556666666666554 333 3345677888899999999986
Q ss_pred cc
Q 020848 133 NH 134 (320)
Q Consensus 133 ~i 134 (320)
..
T Consensus 145 F~ 146 (168)
T d7reqa2 145 YT 146 (168)
T ss_dssp EC
T ss_pred EC
Confidence 43
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=82.03 E-value=5.4 Score=30.96 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+++.+..+.+.+.|++-|.-++|.. +.| ...+++..+-+.++. .+.+-.+.|..+.+.+..|.++|.+++.-|
T Consensus 129 L~~~ei~~a~~~a~~aGadfiKTSTG~~-~~g--at~e~v~~m~~~~~~-~~~iKasGGIrt~~~a~~~i~~Ga~RiGtS 204 (225)
T d1mzha_ 129 LNEEEIKKAVEICIEAGADFIKTSTGFA-PRG--TTLEEVRLIKSSAKG-RIKVKASGGIRDLETAISMIEAGADRIGTS 204 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCCSCS-SSC--CCHHHHHHHHHHHTT-SSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCHHHHHHHHHHHHHcccceEeecCCCC-CCC--CCHHHHHHHHHHhCC-CceEECcCCCCCHHHHHHHHHhchhheecC
Confidence 7889999988888889998777665532 222 233444333333332 355667778899999999999999987765
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=80.97 E-value=5.7 Score=31.57 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHH--hccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKK--AGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~--aGld~v 132 (320)
.+++.+++.++...+.|++-+-++.|. ... ...+.+..++..+++ .++++++ .....+.++.-.+ +|.+-|
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~-~~~---~e~e~~~~vi~~l~~~~~vpiSI--DT~~~~v~~aal~~~~Ga~iI 95 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVGP-AVQ---DKVSAMEWLVEVTQEVSNLTLCL--DSTNIKAIEAGLKKCKNRAMI 95 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC--------CHHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCC-CCC---CHHHHHHHHHHHHHHhhcCCccc--cCCccHHHHHHHHhhccccee
Confidence 689999999999999999988886432 111 223455555555554 3565544 3356777765545 587665
Q ss_pred c-cCcccc-HH-HHhhhC------------C---CCCHHHHH----HHHHHHHHcCCe---eeeeEEEEe----CCCHHH
Q 020848 133 N-HNLDTS-RE-FYSKII------------T---TRSYDERL----ETLKHVREAGIN---VCSGGIIGL----GEAEED 183 (320)
Q Consensus 133 ~-i~let~-~~-~~~~i~------------~---~~~~~~~l----~~i~~a~~~Gi~---v~~~~i~Gl----get~ed 183 (320)
+ ++.... +. ...... + ..+.+++. +.++.+.+.|+. +.++..+|. +++..+
T Consensus 96 NdIsg~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~Ii~DPgi~~~~~~~~~~~~ 175 (262)
T d1f6ya_ 96 NSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPE 175 (262)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHH
T ss_pred echhcccchHHHHHHHHhcCCceEEEEecCCcccccCHHHHHHHHHHHHHHHHHcCCCHHHhhccceeeeccccchHHHH
Confidence 4 332222 11 111110 0 12344433 334456667874 666666543 455556
Q ss_pred HHHHHHHHhcCC
Q 020848 184 RVGLLHTLATLP 195 (320)
Q Consensus 184 ~~~~l~~l~~l~ 195 (320)
..++++.++++.
T Consensus 176 ~le~l~~l~~~~ 187 (262)
T d1f6ya_ 176 VLKTLQQIKMLA 187 (262)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH
Confidence 666777776653
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=80.71 E-value=10 Score=28.98 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++.+.+.|+..+|+. |.+.+...+ .++..++.+.+- .|..+ ..+.+...+.
T Consensus 15 ~T~~~i~~lc~~A~~~~~~aVcV~---------P~~v~~a~~---~l~~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~~ 82 (211)
T d1ub3a_ 15 ATLEEVAKAAEEALEYGFYGLCIP---------PSYVAWVRA---RYPHAPFRLVTVVGFPLGYQEKEVKALEAALACAR 82 (211)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECC---------GGGHHHHHH---HCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC---------HHHHHHHHH---HccCCCCceEEEEecccccCcHHHHHHHHHHHHHc
Confidence 689999999999999999999873 334443333 334455664332 23322 3345555667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.|.+-+-++-. .+ ..++|+.+.+-++.+++.--...+.+|+-. --+++++....+.+.+.| .+.|.-
T Consensus 83 GA~EiD~V~n~~-----~~-~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aG--adfiKT--- 151 (211)
T d1ub3a_ 83 GADEVDMVLHLG-----RA-KAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGG--ADFLKT--- 151 (211)
T ss_dssp TCSEEEEECCHH-----HH-HTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHT--CSEEEC---
T ss_pred CCCeEEEeeccc-----hh-hcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhc--cceEEe---
Confidence 888876644321 11 135787777777777764222344556645 347888999999999888 554433
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.|-+.. ...++++...+... +-+...+..++|--++ +.....+.+|++++
T Consensus 152 ----STG~~~-~gat~e~v~~m~~~---~~~~~~iKasGGIrt~--~~a~~~l~aGa~ri 201 (211)
T d1ub3a_ 152 ----STGFGP-RGASLEDVALLVRV---AQGRAQVKAAGGIRDR--ETALRMLKAGASRL 201 (211)
T ss_dssp ----CCSSSS-CCCCHHHHHHHHHH---HTTSSEEEEESSCCSH--HHHHHHHHTTCSEE
T ss_pred ----cCCCCC-CCCCHHHHHHHHHH---hCCCceEECcCCCCCH--HHHHHHHHHhhhHh
Confidence 333332 34567665444332 2234566666553332 23355678899877
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