Citrus Sinensis ID: 020850

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPLECSSV
Secondary Structure (PSIPRED)
cccccHHHHcccccccccccEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHccccccccccccccEEcccccEEEccccccccEEEEEEEccccccccHHHHHHHHcccccccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHccccccccccccEEEEEHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccEEEcEEEEEEEHHHHHHHccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHEEcccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHcccEEEEEEccccccc
Coil and Loop (DISEMBL)
METASARIstrchwwshtktVTLIWFISFVLFYSFFHMALqnssqnypssggitshshipngeRRARLYDKMARDLDDHGAAFLKQGETSQSLLLSdiftlkdgsvtpvhkaanppvranvlylspkysvpisdavkrifsphfdkviwfqnsslyhfsmfhashhispvpatedeIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCwqvisgtdpMTIRAKLRtalpnapekqlydpaiLHTSFARllghprasptephqLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDgrmkvrkfplecssv
Flexible Loop (DISEMBL)
metasaristrchwwshtKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSggitshshipnGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVtpvhkaanppvrANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMkvrkfplecssv
Low Complexity Region (SEG)
METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPatedeieaeatavravaeDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPLECSSV
Disordered region (IsUnstruct)
*******ISTRCHWWSHTKTVTLIWFISFVLFYSFFHMAL*****************************************AFL******QSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGH*********QLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKF*******
Disordered Region (DISOPRED)
**********RCHWWSHTKTVTLIWFISFVLFYSFFHMAL****************************YDKMARDLDDHGAAF*********LLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG***********LRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPLECS**
Disordered Region (DISEMBL)
**********RCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPLECSSV
Disordered Region (DISPRO)
*******ISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNS*******************ERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPLECS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPLECSSV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
255540995	314	conserved hypothetical protein [Ricinus	0.940	0.958	0.771	1e-131
225456739	324	PREDICTED: uncharacterized protein LOC10	0.940	0.929	0.741	1e-126
356516786	315	PREDICTED: uncharacterized protein LOC10	0.931	0.946	0.732	1e-123
255645528	315	unknown [Glycine max]	0.931	0.946	0.725	1e-122
449477262	308	PREDICTED: uncharacterized protein LOC10	0.925	0.961	0.723	1e-121
449440782	308	PREDICTED: uncharacterized protein LOC10	0.925	0.961	0.719	1e-120
224141705	249	predicted protein [Populus trichocarpa]	0.768	0.987	0.822	1e-112
356507143	309	PREDICTED: uncharacterized protein LOC10	0.918	0.951	0.699	1e-112
359491718	310	PREDICTED: uncharacterized protein LOC10	0.884	0.912	0.680	1e-110
297842203	308	hypothetical protein ARALYDRAFT_476589 [	0.956	0.993	0.622	1e-103

>gi|255540995|ref|XP_002511562.1| conserved hypothetical protein [Ricinus communis] gi|223550677|gb|EEF52164.1| conserved hypothetical protein [Ricinus communis]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/307 (77%), Positives = 263/307 (85%), Gaps = 6/307 (1%)

Query: 13  HWWSHTKTVTLIWFISFVLFYSFFHMALQNS-SQNYPSSGGITSHSHIPNGERRARLYDK 71
           +WWSH+KTVTLIW    ++  S   +AL+NS SQNYPSS   +      N E+R++LYDK
Sbjct: 9   NWWSHSKTVTLIWSFCVIISISILQLALKNSPSQNYPSSSSDSLS----NMEQRSKLYDK 64

Query: 72  MARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP 131
           MARDLDD+G +FLK G+TSQSL LSDIFTLKDGSVTPV KAANPPVRANVLYLS +YSV 
Sbjct: 65  MARDLDDNGPSFLKHGQTSQSLSLSDIFTLKDGSVTPVLKAANPPVRANVLYLSSEYSVR 124

Query: 132 ISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL 191
           IS+AVKRIFSP+FDK IWFQNSS+YHFSMFHASHHI PVPATEDE+EAEA+AV +VAE L
Sbjct: 125 ISEAVKRIFSPYFDKAIWFQNSSVYHFSMFHASHHIGPVPATEDEVEAEASAVGSVAEGL 184

Query: 192 CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFA 251
           CPL+IVLDRV+LTSTGVLLGCWQVISG DP+TIRAKLRTALP+APEKQLYD AILHTSFA
Sbjct: 185 CPLEIVLDRVVLTSTGVLLGCWQVISGPDPITIRAKLRTALPHAPEKQLYDAAILHTSFA 244

Query: 252 RLLGHPRASPTEP-HQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKV 310
           RLLGHP+ SP EP  +LR  HELV  LNNQIRG  AVVSELWYVEEYDVLALALDGRMKV
Sbjct: 245 RLLGHPKDSPAEPSEELRLFHELVARLNNQIRGFVAVVSELWYVEEYDVLALALDGRMKV 304

Query: 311 RKFPLEC 317
           RKF L C
Sbjct: 305 RKFQLGC 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456739|ref|XP_002275470.1| PREDICTED: uncharacterized protein LOC100250065 isoform 1 [Vitis vinifera] gi|297733993|emb|CBI15240.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/310 (74%), Positives = 255/310 (82%), Gaps = 9/310 (2%)

Query: 13  HWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKM 72
           +WWSH+KTV LIW  S +LFY      L+NSS NYPS+    S S     ERR++LYDKM
Sbjct: 6   NWWSHSKTVVLIWLTSALLFYFGLQFVLRNSSLNYPSAVSTMSDS-----ERRSKLYDKM 60

Query: 73  ARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPI 132
             DL++HGAAFL+ GETSQSL LSD+FTLKDG VTPV KAA PPVRANVLYLS ++SVPI
Sbjct: 61  ESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAKPPVRANVLYLSTEFSVPI 120

Query: 133 SDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC 192
           S+AV+ IFSP+FDKVIWFQNSSLYHFSMFHASHHI+PVPATE EIE EATAV AVA+ LC
Sbjct: 121 SEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEVEIEGEATAVEAVAKALC 180

Query: 193 PLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFAR 252
           PLKIVLDRV+LT TGVLLGCWQV SGTDP+TIRAKLRTALP AP+ QLYD AILHTSFAR
Sbjct: 181 PLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPRAPKNQLYDNAILHTSFAR 240

Query: 253 LLGHPRASPTEPH----QLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRM 308
           LLG P+ SPTE H    QL+F HELV  LNN IRG EA VSELWYVEEYDVLALAL+GRM
Sbjct: 241 LLGPPKFSPTELHKASDQLQFFHELVTRLNNIIRGFEADVSELWYVEEYDVLALALNGRM 300

Query: 309 KVRKFPLECS 318
           KVR+F L  S
Sbjct: 301 KVRRFKLAAS 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516786|ref|XP_003527074.1| PREDICTED: uncharacterized protein LOC100791859 [Glycine max]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/310 (73%), Positives = 257/310 (82%), Gaps = 12/310 (3%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           SH+KTV LIW IS   F++ F MAL NSSQ  PSS  + S +   N  +R++LYDKM RD
Sbjct: 9   SHSKTVVLIWLISAFCFFTLFQMALYNSSQT-PSSTSLDSPNS--NTGQRSKLYDKMGRD 65

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+HGAAFLK GETSQSL LSDIFTLKDGSVTPV K ANPPVRANVLYLS ++SVPI++A
Sbjct: 66  LDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRANVLYLSTEFSVPIAEA 125

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAEA++V AV   LCPLK
Sbjct: 126 VKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEAVVATLCPLK 185

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRV+LTSTGVLLGCWQV SGTDP+TIRAKL+ ALP+APEKQLYD AILHTSFARLLG
Sbjct: 186 IVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQLYDAAILHTSFARLLG 245

Query: 256 HPRA-SPTEPHQLR------FLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRM 308
            P+A SP+E  QLR      F H+LVD LN+QI G +AVVSELWYVEEYDVLALAL+GRM
Sbjct: 246 PPKALSPSE--QLRMSDDVQFFHDLVDRLNSQIHGFKAVVSELWYVEEYDVLALALNGRM 303

Query: 309 KVRKFPLECS 318
             RKF L CS
Sbjct: 304 NTRKFRLRCS 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645528|gb|ACU23259.1| unknown [Glycine max]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/310 (72%), Positives = 256/310 (82%), Gaps = 12/310 (3%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           SH+KTV LIW IS   F++ F MAL NSSQ  PSS  + S +   N  +R++LYDKM RD
Sbjct: 9   SHSKTVVLIWLISAFCFFTLFQMALYNSSQT-PSSTSLDSPNS--NTGQRSKLYDKMGRD 65

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+HGAAFLK GETSQSL LSDIFTLKDGSVTPV K ANPPVRANVLYLS ++SVPI++A
Sbjct: 66  LDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRANVLYLSTEFSVPIAEA 125

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAEA++V AV   LCPLK
Sbjct: 126 VKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEAVVATLCPLK 185

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRV+LTSTGVLLGCWQV SGTDP+TIRAKL+ ALP+APEKQLYD AILHTSFARLLG
Sbjct: 186 IVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQLYDAAILHTSFARLLG 245

Query: 256 HPRA-SPTEPHQLR------FLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRM 308
            P+A SP+E  QLR      F H+LVD LN+QI G +AVVSELWYVEE+ VLALAL+GRM
Sbjct: 246 PPKALSPSE--QLRMSDDVQFFHDLVDRLNSQIHGFKAVVSELWYVEEHGVLALALNGRM 303

Query: 309 KVRKFPLECS 318
             RKF L CS
Sbjct: 304 NTRKFRLRCS 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477262|ref|XP_004154975.1| PREDICTED: uncharacterized protein LOC101228237 [Cucumis sativus]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/307 (72%), Positives = 250/307 (81%), Gaps = 11/307 (3%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           +H+ TV LIW  S VLF+  F MAL NS+ +  SS   +        E R++LYDKM RD
Sbjct: 9   AHSTTVALIWLTSAVLFFFLFQMALHNSTSSSDSSVSNS--------ELRSKLYDKMERD 60

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+ GA FLK GETSQSL LSDIFT+KDG+VTPV KAANPPVRANVLYLS +YSVPI +A
Sbjct: 61  LDEKGAVFLKGGETSQSLSLSDIFTIKDGTVTPVLKAANPPVRANVLYLSTEYSVPIFEA 120

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK IF P+FD+ IWFQNSSLYHFSMFHASHHI+P+PA+ DEIEAEA+AV++  E +C LK
Sbjct: 121 VKSIFDPYFDEAIWFQNSSLYHFSMFHASHHITPIPASNDEIEAEASAVKSATEHMCHLK 180

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRVILTSTGVLLGCWQVISGTDP+TIRAKLRTALP+APEKQLYD AILHTSFARLLG
Sbjct: 181 IVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRTALPHAPEKQLYDAAILHTSFARLLG 240

Query: 256 HPRASPT---EPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRK 312
           HP+ S T      +L+  HELV  LN QIRG EAVVSELWYVEEYDVLALAL+GRMKVRK
Sbjct: 241 HPKISQTLDRSSDELQLFHELVARLNKQIRGFEAVVSELWYVEEYDVLALALNGRMKVRK 300

Query: 313 FPLECSS 319
           FPL C S
Sbjct: 301 FPLGCDS 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440782|ref|XP_004138163.1| PREDICTED: uncharacterized protein LOC101220816 [Cucumis sativus]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/307 (71%), Positives = 249/307 (81%), Gaps = 11/307 (3%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           +H+ TV LIW  S VLF+  F MAL NS+ +  SS   +        E R++LYDKM RD
Sbjct: 9   AHSTTVALIWLTSAVLFFFLFQMALHNSTSSSDSSVSNS--------ELRSKLYDKMERD 60

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+ GA FLK GETSQSL LSDIFT+KDG+VTPV KAANPPVRANVLYLS +YSVPI +A
Sbjct: 61  LDEKGAVFLKGGETSQSLSLSDIFTIKDGTVTPVLKAANPPVRANVLYLSTEYSVPIFEA 120

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK IF P+FD+ IWFQNSSLYHFSMFHASHHI+P+PA+ DEIEAEA+AV++  E +C LK
Sbjct: 121 VKSIFDPYFDEAIWFQNSSLYHFSMFHASHHITPIPASNDEIEAEASAVKSATEHMCHLK 180

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRVILTSTGVLLGCWQVISGTDP+TIRAKLRTALP+APEKQLYD AILHTSFARLLG
Sbjct: 181 IVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRTALPHAPEKQLYDAAILHTSFARLLG 240

Query: 256 HPRASPTE---PHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRK 312
           HP+ S T     +  +  HELV  LN QIRG EAVVSELWYVEEYDVLALAL+GRMKVRK
Sbjct: 241 HPKISQTVLSLTNVFQLFHELVARLNKQIRGFEAVVSELWYVEEYDVLALALNGRMKVRK 300

Query: 313 FPLECSS 319
           FPL C S
Sbjct: 301 FPLGCDS 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141705|ref|XP_002324205.1| predicted protein [Populus trichocarpa] gi|222865639|gb|EEF02770.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/248 (82%), Positives = 221/248 (89%), Gaps = 2/248 (0%)

Query: 72  MARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP 131
           M RDLD+ GAAFLK GETSQSLLLSDIFTLKDGSVTPV KAANPPVRANVLYLSP+YSVP
Sbjct: 1   MERDLDERGAAFLKHGETSQSLLLSDIFTLKDGSVTPVLKAANPPVRANVLYLSPEYSVP 60

Query: 132 ISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL 191
           ISD VK  FS +FDKV WFQNSS+YH SMFHASHHI PVP TEDEIEAE  AV+AVA+ L
Sbjct: 61  ISDNVKNTFSSYFDKV-WFQNSSVYHSSMFHASHHIEPVPVTEDEIEAEVNAVKAVADFL 119

Query: 192 CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFA 251
           CPLKIVLDRV+LTSTGVLLGCWQVISGTDP+TIRAKL+TALP+AP+KQLYD AILHTSFA
Sbjct: 120 CPLKIVLDRVVLTSTGVLLGCWQVISGTDPLTIRAKLKTALPHAPKKQLYDDAILHTSFA 179

Query: 252 RLLGHPRASPTEP-HQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKV 310
           RLLGHP++ P EP  +LRF HELV  LN++IRG EAVVSELWYVEEYDVLALALDGRMKV
Sbjct: 180 RLLGHPKSPPMEPLDELRFFHELVARLNDKIRGFEAVVSELWYVEEYDVLALALDGRMKV 239

Query: 311 RKFPLECS 318
            +F L CS
Sbjct: 240 SRFKLGCS 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507143|ref|XP_003522330.1| PREDICTED: uncharacterized protein LOC100789685, partial [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/309 (69%), Positives = 246/309 (79%), Gaps = 15/309 (4%)

Query: 21  VTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHG 80
           V LIWFIS   F++ F MAL NSSQ  PSS  + S +   N  +R++LYDKM RDLD+HG
Sbjct: 3   VVLIWFISAFCFFTLFKMALYNSSQT-PSSTSLDSPN--SNTGQRSKLYDKMGRDLDEHG 59

Query: 81  AAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIF 140
           AAFLK GETSQSL LSDIFTLKDGSVTP  K ANPPVRANVLYLS ++SVPI++AVK +F
Sbjct: 60  AAFLKHGETSQSLSLSDIFTLKDGSVTPALKPANPPVRANVLYLSTEFSVPIAEAVKNVF 119

Query: 141 SPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR 200
           +P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAEA++V  VA  LCPLKIVLDR
Sbjct: 120 NPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEVVAATLCPLKIVLDR 179

Query: 201 VILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRA- 259
           V LTSTGVLLGCWQVI+GTDP+TIRA L+ ALP+A EKQLYD AILH SFARLLG P+A 
Sbjct: 180 V-LTSTGVLLGCWQVITGTDPITIRANLKNALPHASEKQLYDAAILHLSFARLLGLPKAL 238

Query: 260 SPT---EPHQLR------FLHELVDSLNNQIRGSE-AVVSELWYVEEYDVLALALDGRMK 309
           SP+      QLR      F H+LV  LN+QI G + +VVSEL YVEEYDVLALAL+GRM 
Sbjct: 239 SPSIICSTEQLRMSDGVHFFHDLVYRLNSQIHGFKVSVVSELLYVEEYDVLALALNGRMN 298

Query: 310 VRKFPLECS 318
            RKF L CS
Sbjct: 299 TRKFRLGCS 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491718|ref|XP_003634311.1| PREDICTED: uncharacterized protein LOC100250065 isoform 2 [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/310 (68%), Positives = 238/310 (76%), Gaps = 27/310 (8%)

Query: 13  HWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKM 72
           +WWSH+KTV LIW  S +LFY      L+NSS NYPS       S + + ERR++LYDKM
Sbjct: 6   NWWSHSKTVVLIWLTSALLFYFGLQFVLRNSSLNYPSV------STMSDSERRSKLYDKM 59

Query: 73  ARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPI 132
             DL++HGAAFL+ GETSQSL LSD+FTLKDG VTPV KAA PPVRANVLYLS ++SVPI
Sbjct: 60  ESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAKPPVRANVLYLSTEFSVPI 119

Query: 133 SDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC 192
           S+AV+ IFSP+FDKVIWFQNSSLYHFSMFHASHHI+PVPATE EIE EATAV AVA+ LC
Sbjct: 120 SEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEVEIEGEATAVEAVAKALC 179

Query: 193 PLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFAR 252
           PLKIVLDRV+LT TGVLLGCWQV SGTDP+TIRAKLRTALP AP+ QLYD AILHTSFAR
Sbjct: 180 PLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPRAPKNQLYDNAILHTSFAR 239

Query: 253 LLGHPRASPTEPH----QLRFLHELVDSLNNQIRGSE--------------AVVSELWYV 294
           LLG P+ SPTE H    QL+F HELV  LNN IRG E              +VV EL   
Sbjct: 240 LLGPPKFSPTELHKASDQLQFFHELVTRLNNIIRGFEVFAFCFIVENRESCSVVMELM-- 297

Query: 295 EEYDVLALAL 304
             YDVL++ L
Sbjct: 298 -TYDVLSILL 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842203|ref|XP_002888983.1| hypothetical protein ARALYDRAFT_476589 [Arabidopsis lyrata subsp. lyrata] gi|297334824|gb|EFH65242.1| hypothetical protein ARALYDRAFT_476589 [Arabidopsis lyrata subsp. lyrata]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/318 (62%), Positives = 241/318 (75%), Gaps = 12/318 (3%)

Query: 1   METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIP 60
           M TA+       +W    +TV L W IS  +FYS F M L+NS  +  SS    S++   
Sbjct: 1   MATATTSAIRAPNW----RTVVLFWTISLTIFYSLFQMGLRNSPSSSSSSDSFISYA--- 53

Query: 61  NGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRAN 120
             E+  RLYDKM RD+ ++G  F KQGETSQSL LSD+FTLKDG ++PV K ANPPVRAN
Sbjct: 54  --EQSTRLYDKMERDIQENGPLFFKQGETSQSLSLSDLFTLKDGKISPVLKVANPPVRAN 111

Query: 121 VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAE 180
           VL+LS +YSVP+S AV+ +FSP+F+  IWFQ+S +YHFSMFHAS+HI  VPATEDE+E E
Sbjct: 112 VLHLSTEYSVPVSKAVENVFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPATEDEVEGE 171

Query: 181 ATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL 240
           A AV+AVA  LCPL+I+LDRV+LTSTGVLLGCW+V SG DP+TIR+KLR+ LP APEKQL
Sbjct: 172 AAAVKAVANKLCPLEIILDRVLLTSTGVLLGCWKVYSGDDPITIRSKLRSVLPRAPEKQL 231

Query: 241 YDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVL 300
           YD AILHTS ARLLG P +S     QL+ +H+L+  LNNQIRG  A+VSELWYVEE+D+L
Sbjct: 232 YDAAILHTSLARLLGPPASS---DDQLQRIHDLITRLNNQIRGFRAIVSELWYVEEFDLL 288

Query: 301 ALALDGRMKVRKFPLECS 318
           ALAL GRMKVR FPL C+
Sbjct: 289 ALALGGRMKVRSFPLGCA 306

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2019230	314	AT1G74530 "AT1G74530" [Arabido	0.921	0.939	0.603	1.3e-93

TAIR|locus:2019230 AT1G74530 "AT1G74530" [Arabidopsis thaliana (taxid:3702)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 183/303 (60%), Positives = 220/303 (72%)

Query:    19 KTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDD 78
             +T  L W IS  +FYS F M ++NS    PS+   +S S +   E+  RLY+KM +DL +
Sbjct:    15 RTAVLFWTISLTIFYSLFQMGIRNS----PSTSSPSSDSFVSYAEQSTRLYNKMEQDLQE 70

Query:    79 HGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKR 138
             +G  FLKQGETSQSL LSD+FTLKDG + PV K ANPPVRANVL+LS +YSVP+ + VK 
Sbjct:    71 NGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVANPPVRANVLHLSTEYSVPVLEVVKN 130

Query:   139 IFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPXXXXXXXXXXXXXXXXXXDLCPLKIVL 198
             +FSP+F+  IWFQ+S +YHFSMFHAS+HI  VP                  +LCPL+I+L
Sbjct:   131 VFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPATEVEVEAEAAAVKAVAKELCPLEIIL 190

Query:   199 DRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR 258
             DRV+LTSTGVLLGCW+V SG DP+TIR KLR+ LP APEKQLYD AILHTS ARLLG P 
Sbjct:   191 DRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLPRAPEKQLYDAAILHTSLARLLGPP- 249

Query:   259 ASPTEP---HQLRFLHELVDSLNNQIRGSEAVVSELWYVEEYDVLALALDGRMKVRKFPL 315
              SPTE      L+ LHELV  LNNQIRG +A+VSELWYVEE+D+LALAL GRM VR FPL
Sbjct:   250 ISPTEAGSDDHLQLLHELVTRLNNQIRGFKAIVSELWYVEEFDLLALALGGRMNVRSFPL 309

Query:   316 ECS 318
              C+
Sbjct:   310 GCA 312


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      320       302   0.00097  115 3  11 22  0.49    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.34u 0.12s 25.46t   Elapsed:  00:00:01
  Total cpu time:  25.34u 0.12s 25.46t   Elapsed:  00:00:01
  Start:  Fri May 10 12:11:33 2013   End:  Fri May 10 12:11:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
PF13563	153	2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB	97.86
PRK13679	168	hypothetical protein; Provisional	97.15
PRK15124	176	2'-5' RNA ligase; Provisional	96.83
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	96.43
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	95.86
PF10469	209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	95.58
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	93.37
PF09749	239	HVSL: Uncharacterised conserved protein; InterPro:	90.64
PF08975	118	2H-phosphodiest: Domain of unknown function (DUF18	89.67
PHA02574	149	57B hypothetical protein; Provisional	85.59

>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A

Probab=97.86  E-value=1.8e-05  Score=65.34  Aligned_cols=123  Identities=21%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             ceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEeEEEEcCC-CcEEEEeeecCCCChHHHHHHHHhhCCC
Q 020850          156 YHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTST-GVLLGCWQVISGTDPMTIRAKLRTALPN  234 (320)
Q Consensus       156 yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ldRVvltsS-GvLL~cwqv~~Gtep~~iR~~Lr~alP~  234 (320)
                      .|+|++......+..       ++=.+++++++.+..|+++.++++-.-++ |-+| .+.+.+......|+++|.++++.
T Consensus        26 pHITL~~~~~~~~~~-------~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~vi-~l~~~~~~~L~~L~~~l~~~~~~   97 (153)
T PF13563_consen   26 PHITLAFPFDIDDSL-------DELVEALARLAAGFPPFELRLDGFGSFPGKGRVI-FLNVEPSPELEALHRALREALRP   97 (153)
T ss_dssp             -EEEEEEEEE--GGG-------HHHHHHHHHHHHHS--EEEEEEEEEEESSSSSSE-EEEEEE-HHHHHHHHHHHHHHHH
T ss_pred             CEeEEEecCcccccH-------HHHHHHHHHHHccCCCeEEEEccEEEcCCCCCEE-EEEcCCCHHHHHHHHHHHHHHHH
Confidence            999999887655433       44567888899999999999999999842 3332 34444444799999999999888


Q ss_pred             CCccccc-CCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccceeeeCeeeEEeeh
Q 020850          235 APEKQLY-DPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEY  297 (320)
Q Consensus       235 AP~kQ~~-d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~~a~~~~lWfVeE~  297 (320)
                      ...++-. ++.+-|.||||...+...           ..+...+.+.....++++++++.++..
T Consensus        98 ~~~~~~~~~~~~PHiTia~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~l~L~~~~  150 (153)
T PF13563_consen   98 FGFKQDSYRPFRPHITIARRLSPKQA-----------AEAIEKLQSEFPPISFTVDELALVRSD  150 (153)
T ss_dssp             HHGGGGGGS----EEEEEEESS----------------------------EEEEE-EEEEEEEE
T ss_pred             cCCccccCCCcceEEEEeccCCcchh-----------HHHHHHHhCcCCCcEEEEeEEEEEEEC
Confidence            7766543 789999999999987642           334445567777889999999988753

>PRK13679 hypothetical protein; Provisional

Probab=97.15  E-value=0.009  Score=52.07  Aligned_cols=121  Identities=14%  Similarity=0.237  Sum_probs=77.8

Q ss_pred             EEEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEE
Q 020850          118 RANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIV  197 (320)
Q Consensus       118 RavVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~  197 (320)
                      +.+++.+|+++...+. .+++.+.+..   -|. +|   |+|+-..-      ..++++++.=.++++++++...|+++.
T Consensus         3 ~~iai~~p~~~~~~l~-~~~~~~~~~~---~~v-~p---HITL~f~g------~~~~~~~~~l~~~l~~~~~~~~pf~l~   68 (168)
T PRK13679          3 YGIVLFPSKKIQDFAN-SYRKRYDPHY---ALI-PP---HITLKEPF------EISDEQLDSIVEELRAIASETKPFTLH   68 (168)
T ss_pred             eEEEEcCCHHHHHHHH-HHHHhhCccc---ccC-CC---ceEEecCC------CCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            5677888876655553 3455554442   243 34   99996621      123445555577888888889999999


Q ss_pred             EeEEEEcC--CCcEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCC
Q 020850          198 LDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHP  257 (320)
Q Consensus       198 ldRVvlts--SGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp  257 (320)
                      ++++-.=+  +|++-+  .+....+...|+++|++.+-+.+.+   .+.+-|.||||.+++.
T Consensus        69 l~~~~~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~---~~f~PHiTlar~~~~~  125 (168)
T PRK13679         69 VTKVSSFAPTNNVIYF--KVEKTEELEELHERLHSGDFYGEAE---YAFVPHITIGQGLSDD  125 (168)
T ss_pred             EeccccCCCCCCEEEE--EccCCHHHHHHHHHHHhcccccccC---CCCCCeEEeeCCCCcH
Confidence            99985533  355422  2333346899999998875432222   2478899999987653

>PRK15124 2'-5' RNA ligase; Provisional

Probab=96.83  E-value=0.0093  Score=52.43  Aligned_cols=123  Identities=13%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             eEE-EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccE
Q 020850          117 VRA-NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK  195 (320)
Q Consensus       117 VRa-vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~  195 (320)
                      .|+ +.+++|+++...+.+..+++......+  |+ +++++|+|+....-      ..++.++.-.++++++  ...|++
T Consensus         5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~~~~r--wv-~~~nlHiTL~FlG~------v~~~~~~~l~~~l~~~--~~~pF~   73 (176)
T PRK15124          5 KRLFFAIDLPDEIRQQIIHWRATHFPPEAGR--PV-AAANLHLTLAFLGE------VSAEKQQALSQLAGRI--RQPGFT   73 (176)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHhccccCcc--cc-cccccEEEEEecCC------CCHHHHHHHHHHHHhc--ccCCeE
Confidence            354 445788888888877776665322222  55 47789999966544      2334444434444443  457999


Q ss_pred             EEEeEEEEcCCCcEEEEeeecCC-C-ChHHHHHHHHhhCCCC---CcccccCCceeeehhhhhcC
Q 020850          196 IVLDRVILTSTGVLLGCWQVISG-T-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG  255 (320)
Q Consensus       196 ~~ldRVvltsSGvLL~cwqv~~G-t-ep~~iR~~Lr~alP~A---P~kQ~~d~~IlHtTLaRlL~  255 (320)
                      +.++++-.=++.-+|  |--..+ . +...|-++|++++..+   +.+-   +..=|.||||...
T Consensus        74 l~l~~~g~Fp~prvl--wlg~~~~~~~L~~L~~~l~~~l~~~G~~~e~r---~f~PHiTLaR~~~  133 (176)
T PRK15124         74 LTLDDAGQWPRSRVV--WLGMRQPPRGLLQLANMLRSQAARSGCYQSPQ---PFHPHITLLRDAS  133 (176)
T ss_pred             EEECcccCcCCCCEE--EEEcCCCCHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCEeeccCCC
Confidence            999998555543333  444433 2 4566666666654322   2222   3778999999754

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=96.43  E-value=0.037  Score=47.83  Aligned_cols=123  Identities=20%  Similarity=0.271  Sum_probs=71.6

Q ss_pred             EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEe
Q 020850          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  199 (320)
Q Consensus       120 vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ld  199 (320)
                      +.+++|+++...|.+.-+++-....  .....+++.+|+|+-...    .+  ++.+++.=.+++++++.  .|+++.++
T Consensus         5 iAl~~p~~~~~~l~~~~~~l~~~~~--~~r~~~~~~~HiTL~flg----~~--~~~~~~~l~~~l~~~~~--~~f~l~l~   74 (179)
T TIGR02258         5 IAIDLPPEIREQLSRIQRKLKSPLD--GIKWVPPENLHITLKFLG----EV--DEEQVEELEDALAKIAE--PPFTLKLE   74 (179)
T ss_pred             EEecCCHHHHHHHHHHHHHhhccCC--CcEECChHHCEEEEEEcc----CC--CHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence            4567777776666555444432221  235677888999995432    12  22232222333444432  46999999


Q ss_pred             EEEEcCC----CcEEEEeeecCC-CChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcC
Q 020850          200 RVILTST----GVLLGCWQVISG-TDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG  255 (320)
Q Consensus       200 RVvltsS----GvLL~cwqv~~G-tep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~  255 (320)
                      ++-.=++    +++   |.-..+ .+...|+++|++++..+--+.--.+..-|.||||...
T Consensus        75 ~~~~F~~~~~~~vl---~l~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~f~PHiTlar~~~  132 (179)
T TIGR02258        75 GIGVFGNPKRPRVL---WAGVEQSEELTQLHADLERELAKLGFSKEERPFTPHITLARKKS  132 (179)
T ss_pred             eeeeCCCCCCCeEE---EEeeCCCHHHHHHHHHHHHHHHHcCCCCCCCCcCCCEEEEEecC
Confidence            9877554    333   333333 3688888999888754321100135789999999764

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=95.86  E-value=0.075  Score=47.95  Aligned_cols=123  Identities=20%  Similarity=0.245  Sum_probs=85.4

Q ss_pred             EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEe
Q 020850          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  199 (320)
Q Consensus       120 vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ld  199 (320)
                      +.+.+|++++..|.+..+.+......+  |+ .+++||+|+-+..-    +  .+..++.=+++++++.... |+.|.++
T Consensus         5 iAl~~p~~i~~~i~~~~~~~~~~~~~k--~v-~~en~HiTL~flGe----v--~e~~~~~l~~~l~~i~~~~-~f~i~l~   74 (180)
T COG1514           5 IALDPPAEIAERLARIRARLKGARAIK--WV-EPENLHITLKFLGE----V--DEDKADELIEALARIAAPE-PFPITLD   74 (180)
T ss_pred             EEecCCHHHHHHHHHHHHhcCcccccc--cc-cccCceEEEEccCC----c--CchHHHHHHHHHHHhhcCC-ceEEEEe
Confidence            456778888888888877776443112  44 67789999976432    2  2233333457888888888 9999999


Q ss_pred             EEEEcC-CCcEEEEeeecCCC-ChHHHHHHHHhhCCCC---CcccccCCceeeehhhhhcC
Q 020850          200 RVILTS-TGVLLGCWQVISGT-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG  255 (320)
Q Consensus       200 RVvlts-SGvLL~cwqv~~Gt-ep~~iR~~Lr~alP~A---P~kQ~~d~~IlHtTLaRlL~  255 (320)
                      ++-.=+ .+..-..|.=..++ +...|.+.+++.+-++   +++..   ..=|.||||+-+
T Consensus        75 g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~~g~~~~~r~---F~PHvTl~r~k~  132 (180)
T COG1514          75 GAGSFPNPRRPRVIWVGVEETEELRALAEELERALARLGLRPEERP---FVPHVTLARVKS  132 (180)
T ss_pred             eEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCCC---cCCCEEEEeecc
Confidence            986544 46666667666654 3788888888775555   23344   788999999998

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7

Probab=95.58  E-value=0.031  Score=50.09  Aligned_cols=133  Identities=18%  Similarity=0.107  Sum_probs=81.5

Q ss_pred             eEEEEeec-CccchhHHHHHHHHHcCCCCCc-eeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHh-----
Q 020850          117 VRANVLYL-SPKYSVPISDAVKRIFSPHFDK-VIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAE-----  189 (320)
Q Consensus       117 VRavVl~L-p~~~a~~i~~av~~vl~p~~~~-~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~-----  189 (320)
                      -=.+++|+ .+++...+.+--.+++....+- .-++++++.+|+|+-..+-..      +++++.=.++++++..     
T Consensus         2 thFl~ipl~~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~L~~------~~~i~~a~~~L~~~~~~i~~~   75 (209)
T PF10469_consen    2 THFLCIPLNSPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLSLDT------DEEIEKAKEALKSLKQEIKDQ   75 (209)
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEeeCCC------HHHHHHHHHHHHHHHHHHhhh
Confidence            34689999 4466666544444455333321 236779999999998765433      3344444444444422     


Q ss_pred             --hcCccEEEEeEEEEcCC-----CcEEEEeeecCC-CChHHHHHHHHhhCCCCCccccc---CCceeeehhhhhcC
Q 020850          190 --DLCPLKIVLDRVILTST-----GVLLGCWQVISG-TDPMTIRAKLRTALPNAPEKQLY---DPAILHTSFARLLG  255 (320)
Q Consensus       190 --~~cPi~~~ldRVvltsS-----GvLL~cwqv~~G-tep~~iR~~Lr~alP~AP~kQ~~---d~~IlHtTLaRlL~  255 (320)
                        +..|+++.+..+-.=+.     -||-+-....++ .....+.+.|++.|-.+-=...-   +...+|.||++.-.
T Consensus        76 ~~~~~~~~i~l~Gl~~f~~d~~~~~VLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~~H~Tl~n~~~  152 (209)
T PF10469_consen   76 LQNPPPLKITLKGLGYFNDDPSKARVLYAKVSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFKPHITLMNTSY  152 (209)
T ss_pred             ccCCCCceEEeeechhhCCCCCcceEEEEcccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcceEEEEEeccc
Confidence              24899999998876666     566654333333 34677777777776655422211   13689999999986

This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=93.37  E-value=0.4  Score=36.79  Aligned_cols=75  Identities=15%  Similarity=0.236  Sum_probs=49.1

Q ss_pred             eecCccchhHHHHHHHHH---cCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850          122 LYLSPKYSVPISDAVKRI---FSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  198 (320)
Q Consensus       122 l~Lp~~~a~~i~~av~~v---l~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l  198 (320)
                      +++|++....+.+..+++   +...+.+  |. .+.++|+|+-...--.      ++.+.+=.++++.++...-|+.+.+
T Consensus         1 i~~p~~~~~~L~~l~~~l~~~~~~~~~r--~~-~~~~~HiTL~flg~~~------~~~~~~l~~~l~~~~~~~~~f~~~~   71 (87)
T PF02834_consen    1 IDLPEEIKEQLNQLQERLRQALPPLGIR--WV-RPFNPHITLAFLGEVP------PDQLPELIEALANIASRFPPFTLTV   71 (87)
T ss_dssp             EE-THHHHHHHHHHHHHHHHHCCSCTEE--EG-SCGGSEEEEEEEEEES------HHHHHHHHHHHHHHHCCCB-EEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhhccccCCc--cc-CCCCCeEEEEeCCCCC------HHHHHHHHHHHHhhhccCCCeEEEE
Confidence            456777666555444444   4444433  66 9999999996655221      4555555677888888889999999


Q ss_pred             eEEEEcC
Q 020850          199 DRVILTS  205 (320)
Q Consensus       199 dRVvlts  205 (320)
                      +++.+=+
T Consensus        72 ~~~~~f~   78 (87)
T PF02834_consen   72 DGFGLFP   78 (87)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEeC
Confidence            9997653

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans

Probab=90.64  E-value=9.6  Score=35.39  Aligned_cols=152  Identities=13%  Similarity=0.202  Sum_probs=95.7

Q ss_pred             cccCCCccccccccCCCCeEEEEeecCc--cchhHHHHHHHHHc----------CCCCCceeeeeCCCcceEEEeecCCC
Q 020850           99 FTLKDGSVTPVHKAANPPVRANVLYLSP--KYSVPISDAVKRIF----------SPHFDKVIWFQNSSLYHFSMFHASHH  166 (320)
Q Consensus        99 F~~~dg~v~P~l~~~~~pVRavVl~Lp~--~~a~~i~~av~~vl----------~p~~~~~i~~q~~~~yH~TmFHaShh  166 (320)
                      -+.++|+++=.-|...-+.-.+-++.++  +....+.+.+.++-          .|....  =...+.-+|+|+      
T Consensus        23 ~~~h~gR~R~~pHv~Gnw~t~vYi~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~s--~lg~~~~lHISL------   94 (239)
T PF09749_consen   23 PSLHGGRIRSFPHVEGNWPTHVYIEWPPSEDQRELLEKLISKANSICPKLHSEFEPLLYS--DLGSPDPLHISL------   94 (239)
T ss_pred             cccccCceecccccCCccceEEEEEecCcHHHHHHHHHHHHHHHhhhhhhhhhccccccc--ccCCCCCeEEEe------
Confidence            4555788876668888888888888865  33334444444431          111110  022566799987      


Q ss_pred             CCCCCCChHHHHHHHHHHHHHH--hhcCccEEEEeEEEEc---CCCcEEEEeeecCCCC--hHHHHHHHHhhCCCCCccc
Q 020850          167 ISPVPATEDEIEAEATAVRAVA--EDLCPLKIVLDRVILT---STGVLLGCWQVISGTD--PMTIRAKLRTALPNAPEKQ  239 (320)
Q Consensus       167 ~dPvpat~~ei~~E~~av~~v~--~~~cPi~~~ldRVvlt---sSGvLL~cwqv~~Gte--p~~iR~~Lr~alP~AP~kQ  239 (320)
                      ..|++-....++.=++.+++.+  .+..|+.+.++++-+=   ...-.-+.+.|..|..  ...|=+++-+++-.-=..+
T Consensus        95 Sr~~~lr~~~id~f~~~lr~~l~~~~~~~F~v~f~~~~~~~N~e~TR~FL~l~V~~~~~~~l~~l~~~i~~~l~~~~lp~  174 (239)
T PF09749_consen   95 SRTFPLRTHQIDPFVDSLRQALRSSNIRPFYVSFSGLDVYTNDEKTRSFLALRVSEGSNNELKRLLDRINEVLKEFGLPP  174 (239)
T ss_pred             CCCccccHHHHHHHHHHHHHHHhhcCCceEEEEeCceEEEecCCCCeEEEEEEecccccHHHHHHHHHHHHHHHHhCCCc
Confidence            3445545566677788899999  8889999999885442   2334555666766643  3333334444443333445


Q ss_pred             cc-CCceeeehhhhhcCCCC
Q 020850          240 LY-DPAILHTSFARLLGHPR  258 (320)
Q Consensus       240 ~~-d~~IlHtTLaRlL~pp~  258 (320)
                      .| +.-..|.|+|--++.+.
T Consensus       175 ~Y~~~~~fHvSIAw~~~~~~  194 (239)
T PF09749_consen  175 FYDEDPSFHVSIAWTLGDPS  194 (239)
T ss_pred             ccCCCCCCEEEEEEECCCch
Confidence            67 88999999999998775

It contains two conserved motifs, HxSL and FHVSL. The function is unknown.

>PF08975 2H-phosphodiest: Domain of unknown function (DUF1868); InterPro: IPR015069 This family consist of hypothetical bacterial proteins

Probab=89.67  E-value=2.2  Score=36.76  Aligned_cols=88  Identities=17%  Similarity=0.323  Sum_probs=40.4

Q ss_pred             EEeecCcc--chhHH---HHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCC----C---ChHHHHHHHHHHHHH
Q 020850          120 NVLYLSPK--YSVPI---SDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVP----A---TEDEIEAEATAVRAV  187 (320)
Q Consensus       120 vVl~Lp~~--~a~~i---~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvp----a---t~~ei~~E~~av~~v  187 (320)
                      +|-+||+.  ...++   ++.+++.  |..++ .=+.++++||.|+|---...+=-+    +   .+.-+++=-+.+.+=
T Consensus        16 vIchl~~~s~~~~al~~i~~~l~~~--~~~~k-~a~lP~sS~HMTVf~Gv~e~~R~~~~WP~~l~~d~~l~~~t~~~~~r   92 (118)
T PF08975_consen   16 VICHLPQDSPFYAALLAIQQRLRES--PFADK-LAFLPPSSYHMTVFEGVIESRREPGFWPADLPLDAPLQECTRYFAER   92 (118)
T ss_dssp             EEEEB-TTSHHHHHHHHHHHHHHTS--GGGGG-EEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHHHHHH
T ss_pred             EEeecCCCChHHHHHHHHHHHHHhC--ccccc-eEecCcchhhhhhhccccccccCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            45678773  22233   3333332  22255 336788899999998665543222    1   222233333334444


Q ss_pred             Hhh---cCccEEEEeEEEEcCCCcEE
Q 020850          188 AED---LCPLKIVLDRVILTSTGVLL  210 (320)
Q Consensus       188 ~~~---~cPi~~~ldRVvltsSGvLL  210 (320)
                      .++   ..||+|.+.+.-+.++|.+|
T Consensus        93 L~~f~~~~~f~m~v~~~~~~p~g~~l  118 (118)
T PF08975_consen   93 LKGFPLPGPFRMRVTRTGMRPQGIVL  118 (118)
T ss_dssp             GGG--------EEE--EEEETTEEEE
T ss_pred             HhcCCCCCCeEEEEEecccccccccC
Confidence            444   47999999999999988775

; PDB: 2FSQ_A.

>PHA02574 57B hypothetical protein; Provisional

Probab=85.59  E-value=2.9  Score=37.12  Aligned_cols=110  Identities=8%  Similarity=-0.053  Sum_probs=67.6

Q ss_pred             CCCeEEEEe-ecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 020850          114 NPPVRANVL-YLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC  192 (320)
Q Consensus       114 ~~pVRavVl-~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~c  192 (320)
                      +.++|+-+. .+|+++..+|.+.-++ +.+  .+   ..+++++|.|+-. +             +..+..+   ..+.-
T Consensus         6 ~~~~RlF~Al~~~~~~r~~L~~lq~~-l~~--~r---~V~~enLHlTL~F-~-------------~~~v~~l---~~~~~   62 (149)
T PHA02574          6 EFSQGTYVAAKFSEATLDALERLQRT-LRI--PN---PVPRDKLHSTIVY-S-------------RVYVPFI---PASGS   62 (149)
T ss_pred             cccceEEEEEcCCHHHHHHHHHHHHh-ccC--Cc---ccCHHHCEEEEec-C-------------HHHhHHH---hccCC
Confidence            345676554 6788888888776666 333  33   4578889999955 1             2223333   22668


Q ss_pred             ccEEEEeEEEEcC--CCcEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhh
Q 020850          193 PLKIVLDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFAR  252 (320)
Q Consensus       193 Pi~~~ldRVvlts--SGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaR  252 (320)
                      |+++.++++=.=+  .|-+|  |--....+...+.+++++++-. ..   .++..=|.||||
T Consensus        63 ~F~l~l~glG~F~~~~~rvl--Wlg~~~~~L~~L~~~l~~~l~~-~~---~r~F~PHITLaR  118 (149)
T PHA02574         63 TEVASSGHLEVWETQDKNAL--VLVLESEYLQCRHKYARALGAT-HD---FDDYTPHITLSY  118 (149)
T ss_pred             CeEEEeccccccCCCCCCEE--EEEeCCHHHHHHHHHHHHHhhc-CC---CCCcCCcEEEee
Confidence            9999999985554  34332  2222222466666677776544 21   235788999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 48/284 (16%), Positives = 79/284 (27%), Gaps = 72/284 (25%)

Query: 34  SFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD----LDD-----HGAAFL 84
              +    N +     S  I    H    E R  L  K   +    L +        AF 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 85  KQGETSQSLLLSDIFTLKDGSVT---PVHKAANPPVRANVLYLSPKYSVPISDAVKRIFS 141
                 + LL     T +   VT         +  +  + + L+P          K +  
Sbjct: 264 LS---CKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSLLL 308

Query: 142 PHFDKVIWFQNSSL---------YHFSMFHASHHISPVPATED-----EIEAEATAVRAV 187
               K +  +   L            S+   S  I    AT D       +   T + + 
Sbjct: 309 ----KYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 188 AEDLCP---------LKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKL--RTALPNAP 236
              L P         L +      +  T +L   W  +  +D M +  KL   + +    
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLV---- 417

Query: 237 EKQLYDPAI-LHTSFARLLGHPRASPTEPHQLRFLH-ELVDSLN 278
           EKQ  +  I + + +  L                LH  +VD  N
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYA-------LHRSIVDHYN 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	98.2
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	97.72
2d4g_A	171	Hypothetical protein BSU11850; beta barrel, alpha	97.58
1iuh_A	198	2'-5' RNA ligase; riken structural genomics/proteo	97.28
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	97.16
2fsq_A	243	ATU0111 protein; alpha-beta barrel, structural gen	97.1

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=98.20  E-value=3.7e-05  Score=64.51  Aligned_cols=127  Identities=10%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             EEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850          119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  198 (320)
Q Consensus       119 avVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l  198 (320)
                      .+++++|+++...|.+.-+++- +. +......+++.+|+|+.....      ..++++++=.+++++++++.-|+++.+
T Consensus         4 Fial~~p~~~~~~l~~~~~~l~-~~-~~~~~~v~~~~lHiTL~flg~------~~~~~~~~l~~~l~~~~~~~~pf~l~l   75 (184)
T 1vgj_A            4 FIAIDVNESVRDSLVRAQDYIG-SK-EAKIKFVERENLHITLKFLGE------ITEEQAEEIKNILKKIAEKYKKHEVKV   75 (184)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHC-SS-SEEEEECCGGGCEEEEEEEES------CCHHHHHHHHHHHHHHHTTSBCEEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHHHh-hc-CCCcEecCccccEEEEEeecC------CCHHHHHHHHHHHHHHHccCCCeEEEE
Confidence            3567888888888876666664 33 213555788889999976542      234555555678888888889999999


Q ss_pred             eEEEEcCCC---cEEEEeeecCCCChHHHHHHHHhhCCCC--CcccccCCceeeehhhhhcCCC
Q 020850          199 DRVILTSTG---VLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP  257 (320)
Q Consensus       199 dRVvltsSG---vLL~cwqv~~Gtep~~iR~~Lr~alP~A--P~kQ~~d~~IlHtTLaRlL~pp  257 (320)
                      +++-.=+++   -+| .-.+.++.+...|+++|++++...  +...   +..-|.||||...+.
T Consensus        76 ~g~g~F~~~~~p~vl-~~~v~~~~~L~~L~~~l~~~l~~~g~~~~~---~f~PHiTLar~~~~~  135 (184)
T 1vgj_A           76 KGIGVFPNPNYIRVI-WAGIENDEIIREMAREIEDELAKLGFKKEG---NFVAHITLGRVKFVK  135 (184)
T ss_dssp             EEEEEEECSSSEEEE-EEEEETCHHHHHHHHHHHHHHHTTTCCCCC---CCCCEEEEEEEEEES
T ss_pred             eeEeeCCCCCCCcEE-EEEecCCHHHHHHHHHHHHHHHHcCCCCCC---CccceEEEEeecccC
Confidence            998765552   222 122334446889999998887543  2211   578999999987644

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=97.72  E-value=0.00021  Score=61.25  Aligned_cols=129  Identities=12%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             eEEE-EeecCc-cchhHHHHHHHHHcC--CCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhc-
Q 020850          117 VRAN-VLYLSP-KYSVPISDAVKRIFS--PHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL-  191 (320)
Q Consensus       117 VRav-Vl~Lp~-~~a~~i~~av~~vl~--p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~-  191 (320)
                      .|+- .+++|+ ++...|.+.-+++..  |..+ .-| .+++.+|+|+....-      ..+++++.=.+++++++..+ 
T Consensus         3 ~r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~-v~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~   74 (205)
T 2vfk_A            3 PNYFLSIPITNKKITAGIKVLQNSILRQDNRLT-KAM-VGDGSFHITLLVMQL------LNEDEVNIGTDALLELKPFVE   74 (205)
T ss_dssp             CCEEEEEECCCHHHHHHHHHHHHHHHHHCGGGG-GGB-CCTTCCEEEEEEECC------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCHHHHHHHHHHHHHHHhcCcchH-HHh-CCcCccEEEEEEEEc------CCHHHHHHHHHHHHHHHHHHH
Confidence            3444 489997 787777666655542  2211 125 457789999976532      23455555566777766655 


Q ss_pred             -----CccEEEEeEEEEcCCCcEEEEeeecCC---CChHHHHHHHHhhCCCCCc-ccccCCceeeehhhhhcC
Q 020850          192 -----CPLKIVLDRVILTSTGVLLGCWQVISG---TDPMTIRAKLRTALPNAPE-KQLYDPAILHTSFARLLG  255 (320)
Q Consensus       192 -----cPi~~~ldRVvltsSGvLL~cwqv~~G---tep~~iR~~Lr~alP~AP~-kQ~~d~~IlHtTLaRlL~  255 (320)
                           -|+++.++++-.=+.+||-+.  +.++   .....|+++|++++..+-- .+-..+..-|.||||.-.
T Consensus        75 ~~~~~~pf~l~l~g~~~F~~~vl~~~--v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTlar~~~  145 (205)
T 2vfk_A           75 EILEGKHLTLPFHGIGTFQGQVGFVK--LADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTFMKLSK  145 (205)
T ss_dssp             HHTTTSCCEEEEEEEEEETTTEEEEE--ECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEEEEGGG
T ss_pred             HHhCCCCcEEEEechhhCCCcEEEEe--ecccccHHHHHHHHHHHHHHHHHcCCCcCCCCCcceEEEEEeccc
Confidence                 899999999977776644332  3232   2478888888888654321 111346889999999864

>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}

Probab=97.58  E-value=0.00036  Score=57.92  Aligned_cols=161  Identities=16%  Similarity=0.225  Sum_probs=98.7

Q ss_pred             EEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850          119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  198 (320)
Q Consensus       119 avVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l  198 (320)
                      ++++++|+++...|.+.-+++ .+.   .-|+.+    |+|+.....      ..+.++++=.++++++++++.|+++.+
T Consensus         4 Fiai~~~~~~~~~l~~~~~~~-~~~---~~~v~p----HiTL~f~g~------~~~~~~~~l~~~l~~~~~~~~pf~l~l   69 (171)
T 2d4g_A            4 GIVLFPSKKLQDLANSYRKRY-DPS---YSLIPP----HLTLRASFE------CAEEKADQLVSHLRNIAKESHPLVLKM   69 (171)
T ss_dssp             EEEBCCCHHHHHHHHHHHHHH-CGG---GGTSCS----CBCCSSCEE------CCGGGHHHHHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHh-Ccc---cCCCCC----eEEeecCCc------CChHHHHHHHHHHHHHHccCCCEEEEE
Confidence            356677887777776655554 331   125444    999965442      123344555678888899999999999


Q ss_pred             eEEEEcCCC--cEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHH
Q 020850          199 DRVILTSTG--VLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDS  276 (320)
Q Consensus       199 dRVvltsSG--vLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~  276 (320)
                      +++-.=+.+  ++-+  .+....+...|+++|++.+...+.+.   +..-|.||||...+        +   .+.++...
T Consensus        70 ~~~g~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~~---~f~PHiTLar~~~~--------~---~~~~~~~~  133 (171)
T 2d4g_A           70 TKYSSFAPVNNVIYI--KAEPTEELKTLNEKLYTGVLAGEQEY---NFVPHVTVGQNLSD--------D---EHSDVLGQ  133 (171)
T ss_dssp             EEEEECTTTCCCEEE--EECCCHHHHHHHHHTTSGGGCSCCCS---CCCCEEEEECSCCH--------H---HHHHHHHH
T ss_pred             CCcEEeCCCCcEEEE--EccCChHHHHHHHHHHhcccccccCC---CCCCeEEeecCCCH--------H---HHHHHHHH
Confidence            999776533  4432  22233468899999999987654333   47889999995521        2   13344444


Q ss_pred             HH-hhhccceeeeCeeeEEeehhhHhhhcCCcee-eeeeccc
Q 020850          277 LN-NQIRGSEAVVSELWYVEEYDVLALALDGRMK-VRKFPLE  316 (320)
Q Consensus       277 lt-~~L~G~~a~~~~lWfVeE~d~LAlAL~g~~~-~~~~~~~  316 (320)
                      +. ..+ ...++++++-.++.      .-|+.|+ ...+||+
T Consensus       134 ~~~~~~-~~~~~v~~i~L~~s------~~g~~y~~l~~~~L~  168 (171)
T 2d4g_A          134 LKMQEV-SHEEIVDRFHLLYQ------LENGSWTVYETFLLG  168 (171)
T ss_dssp             HTTSCC-CEEEEECEEEEEEE------CTTSCEEEEEEEECC
T ss_pred             hcCCCC-ceeEEECeEEEEEE------CCCCcEEEEEEEecC
Confidence            32 222 23566676666554      3366776 4456664

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2

Probab=97.28  E-value=0.00094  Score=57.58  Aligned_cols=124  Identities=14%  Similarity=0.171  Sum_probs=80.2

Q ss_pred             EEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850          119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  198 (320)
Q Consensus       119 avVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l  198 (320)
                      ++.+.+|+++...|.+.-+++- ... +.=|+ +++.+|+|+.....      ..++.+++=.+++++++++.-|+++.+
T Consensus         4 Fial~~p~~~~~~l~~~~~~l~-~~~-~~r~v-~~~~~HiTL~flge------v~~~~~~~l~~~l~~~~~~~~pf~l~l   74 (198)
T 1iuh_A            4 FYAVFLPEEVRAALVEAQTKVR-PFR-GWKPV-PPHQLHLTLLFLGE------RPEEELPDYLALGHRLARLEAPFRARL   74 (198)
T ss_dssp             EEEEECCHHHHHHHHHHHGGGT-TCT-TEEEC-CGGGCEEEEEEEEE------CCGGGHHHHHHHHHHHHHHSCCEEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHhh-hhc-CCccc-CCCCCEEEEEeCCc------CCHHHHHHHHHHHHHHhccCCCeEEEE
Confidence            3567788887777766555553 311 11254 57889999965432      223445555678888888999999999


Q ss_pred             eEEEEcCCC----cEEEEeeecCCCChHHHHHHHHhhCCCC--------C-cccccCCceeeehhhhhcCCC
Q 020850          199 DRVILTSTG----VLLGCWQVISGTDPMTIRAKLRTALPNA--------P-EKQLYDPAILHTSFARLLGHP  257 (320)
Q Consensus       199 dRVvltsSG----vLL~cwqv~~Gtep~~iR~~Lr~alP~A--------P-~kQ~~d~~IlHtTLaRlL~pp  257 (320)
                      +++-.=+.+    ||-+  .+ ...+...|.++|++++...        + .+   .+..=|.||||...+.
T Consensus        75 ~g~g~F~~~~~p~vl~l--~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~---~~f~PHiTLar~~~~~  140 (198)
T 1iuh_A           75 RGTGYFPNEGTPRVWFA--KA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWD---KPFKPHITLARRKAPA  140 (198)
T ss_dssp             EEEEEESSSSSCSEEEE--EE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT---SCCCCEEEEEEESSCC
T ss_pred             cceEECCCCCCCCEEEE--EC-CCHHHHHHHHHHHHHHHHhcCCCcccccCCC---CCCCCcEEeEeccCcc
Confidence            999876653    4421  12 2235778888877665432        1 12   2478899999987644

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=97.16  E-value=0.0045  Score=53.22  Aligned_cols=152  Identities=11%  Similarity=0.081  Sum_probs=92.8

Q ss_pred             CCeEEEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcc
Q 020850          115 PPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPL  194 (320)
Q Consensus       115 ~pVRavVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi  194 (320)
                      ..-|++++..|+++...|.+..+++= ...    + .++..+|+|+      +.+++..   ++.=.+++++++++..|+
T Consensus         6 ~~~~~f~~~pp~~~~~~l~~~~~~l~-~~~----~-~~~~~~HiTL------lG~~~~~---~~~l~~~L~~~a~~~~pf   70 (189)
T 1jh6_A            6 KDVYSVWALPDEESEPRFKKLMEALR-SEF----T-GPRFVPHVTV------AVSAYLT---ADEAKKMFESACDGLKAY   70 (189)
T ss_dssp             CEEEEEEEEECTTTHHHHHHHHHHHH-HHH----T-CCCCCCCEEE------EEEEEEC---HHHHHHHHHHHHHTCBCE
T ss_pred             CCcEEEEEECCHHHHHHHHHHHHHHH-HHc----C-CCCCCCEEEE------eCCCCCC---HHHHHHHHHHHHhhCCCe
Confidence            34677777668887777766665552 111    1 1668999999      2333322   233356778888889999


Q ss_pred             EEEEeEEEE--cCCCcEEEEeeec-CCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHH
Q 020850          195 KIVLDRVIL--TSTGVLLGCWQVI-SGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLH  271 (320)
Q Consensus       195 ~~~ldRVvl--tsSGvLL~cwqv~-~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~  271 (320)
                      .+.+++|=.  ..-.+   +|--+ .+.+...|.+++++++.-.|.    .+..=|.||||.=-++       +..+.+.
T Consensus        71 ~l~l~g~g~~~~~~rv---lw~~v~~~~~L~~L~~~v~~~~g~~~~----~~f~PHlTLar~~~~~-------~~~~~~~  136 (189)
T 1jh6_A           71 TATVDRVSTGTFFFQC---VFLLLQTTPEVMEAGEHCKNHFNCSTT----TPYMPHLSLLYAELTE-------EEKKNAQ  136 (189)
T ss_dssp             EEEEEEEEEEEETTEE---EEEEECCCHHHHHHHHHHHHHTTCCCC----SCCCCEEEEECCCCCH-------HHHHHHH
T ss_pred             EEEEcceeccCccceE---EEEeecCCHHHHHHHHHHHHHhCCCCC----CCCCCeEEEEEecCCH-------HHHHHHH
Confidence            999999976  11222   34444 334688899999998755543    2578899999862111       2222233


Q ss_pred             HHHHHHHhhhccceeeeCeeeEEe
Q 020850          272 ELVDSLNNQIRGSEAVVSELWYVE  295 (320)
Q Consensus       272 a~c~~lt~~L~G~~a~~~~lWfVe  295 (320)
                      +....+...+.+..++++++..++
T Consensus       137 ~~l~~~~~~~~~~~~~v~~~~L~~  160 (189)
T 1jh6_A          137 EKAYTLDSSLDGLSFRLNRLALCK  160 (189)
T ss_dssp             HHHHHHCTTCTTCEEEEEEEEEEE
T ss_pred             HHHHhhccCCCCCcEEeeEEEEEE
Confidence            333333234555677777776654

>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4

Probab=97.10  E-value=0.0023  Score=59.16  Aligned_cols=181  Identities=12%  Similarity=0.140  Sum_probs=104.4

Q ss_pred             cccc-ccC-CCccccccccCCCCeEEEEeecCcc--chh---HHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCC
Q 020850           96 SDIF-TLK-DGSVTPVHKAANPPVRANVLYLSPK--YSV---PISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHIS  168 (320)
Q Consensus        96 ~dlF-~~~-dg~v~P~l~~~~~pVRavVl~Lp~~--~a~---~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~d  168 (320)
                      .++- +|+ ||...|     .+... +|-|+++.  +..   .|++.+++.  +..++ +=+.++++||.|||----..+
T Consensus        25 ~~~g~Kf~~~G~~~p-----FpGnT-vI~~l~~~s~~~~~l~~iq~~L~~~--~~~~~-~~~lPpsS~HMTvfdgv~e~~   95 (243)
T 2fsq_A           25 RHLGSRFSAEGEFLP-----EPGNT-VVCHLVEGSQTESAIVSTRQRFLDM--PEASQ-LAFTPVSSLHMTVFQGVIESR   95 (243)
T ss_dssp             TTBTTTBCTTSCBCC-----CCEEE-EEEEBCTTSHHHHHHHHHHHHHHTS--GGGGG-EEECCGGGCEEEEEEEEETTC
T ss_pred             cccccCCCCCCCEec-----CCCCe-EEEecCCCChHHHHHHHHHHHHHhc--cccCc-eeeCCchhhhhhhcccccccc
Confidence            4443 455 676666     22233 44566552  223   344444432  22344 336788899999997332221


Q ss_pred             -C---CCC---ChHHHHHHHHHHHHHHhhc---CccEEEEeEEEEcCCCcEEEEeeecCCCChHHHHHHHHhhCCCCCcc
Q 020850          169 -P---VPA---TEDEIEAEATAVRAVAEDL---CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEK  238 (320)
Q Consensus       169 -P---vpa---t~~ei~~E~~av~~v~~~~---cPi~~~ldRVvltsSGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~k  238 (320)
                       .   -|+   .+..++.--+.+.+-.+++   +||++.+..+  .++|+.|.-.....-.-..++|++|.+.+.---+ 
T Consensus        96 r~~~~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~~~v~~l--~~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p-  172 (243)
T 2fsq_A           96 RALPYWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFNMRVTGL--RPVGMVMKGATAEDDSIVALWRDTFADFFGYRHP-  172 (243)
T ss_dssp             CSTTSSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCCEEEEEE--ETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCCT-
T ss_pred             ccCCCCCccCcccchHHHHHHHHHHHHhcccCCCCeEEEEecc--ccceEEEecCCHHHHHHHHHHHHHHHHHhCCCCC-
Confidence             1   121   2333444344455444443   7999999888  4666554221111111266899999997764222 


Q ss_pred             cccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccc--eeeeCeeeEE
Q 020850          239 QLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGS--EAVVSELWYV  294 (320)
Q Consensus       239 Q~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~--~a~~~~lWfV  294 (320)
                       .+|....|.|||=++.++.  .   ++...++.+++++++++.+.  .++++..=|+
T Consensus       173 -~hd~y~fHITLgY~~~~l~--~---ee~~~~~~~l~~~~~~l~~~~p~i~l~~~efc  224 (243)
T 2fsq_A          173 -DHDTYEFHITLSYIVSWFE--P---ECLPRWQAMLDEELEKLRVAAPVIQMRPPAFC  224 (243)
T ss_dssp             -TGGGCCEEEECEEESSCBC--G---GGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEE
T ss_pred             -CCcceEEEEEEEeccCCCC--H---HHHHHHHHHHHHHHHHHHhhCCeeeecCcceE
Confidence             2456999999999997653  3   55667899999999999773  3455554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	97.16
d1jh6a_	181	tRNA splicing product Appr>p cyclic nucleotide pho	96.89
d2fsqa1	232	Putative phosphoesterase Atu0111 {Agrobacterium tu	96.77

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00026  Score=57.73  Aligned_cols=130  Identities=12%  Similarity=0.110  Sum_probs=79.2

Q ss_pred             EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEe
Q 020850          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  199 (320)
Q Consensus       120 vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ld  199 (320)
                      +.+++|+++...|.+..+++ .+... .=| .+++.||+|+...-      ..++++++.=.+++++++++..|+.+.++
T Consensus         5 ial~~p~~~~~~l~~~~~~l-~~~~~-~r~-~~~~~lHiTL~flg------~~~~~~~~~l~~~l~~~~~~~~pf~l~~~   75 (183)
T d1iuha_           5 YAVFLPEEVRAALVEAQTKV-RPFRG-WKP-VPPHQLHLTLLFLG------ERPEEELPDYLALGHRLARLEAPFRARLR   75 (183)
T ss_dssp             EEEECCHHHHHHHHHHHGGG-TTCTT-EEE-CCGGGCEEEEEEEE------ECCGGGHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEcCCHHHHHHHHHHHHHc-ccccc-ccc-CCcccCEEEEEcCC------CCCHHHHHHHHHHHHHHHhcCCCeEEEec
Confidence            55677888777775554444 33322 115 46789999995331      12345566667889999999999999999


Q ss_pred             EEEEcCCCc-EEEEeeecCCCChHHHHHHHHhhCCCCCcccc--c----CCceeeehhhhhcCCCC
Q 020850          200 RVILTSTGV-LLGCWQVISGTDPMTIRAKLRTALPNAPEKQL--Y----DPAILHTSFARLLGHPR  258 (320)
Q Consensus       200 RVvltsSGv-LL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~--~----d~~IlHtTLaRlL~pp~  258 (320)
                      ++-.=+.+. -...|....+.+...+.++|++++..+..++.  +    .+..=|.||||.=.+.+
T Consensus        76 ~~~~f~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~r~f~PHITlar~~~~~~  141 (183)
T d1iuha_          76 GTGYFPNEGTPRVWFAKAEAEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKAPAP  141 (183)
T ss_dssp             EEEEESSSSSCSEEEEEEECHHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESSCCC
T ss_pred             ccccCCCCCCcEEEEEecCChHHHHHHHHHHHHHHHHhhhhccCCCccCCCcCCCEEEEeEcCCch
Confidence            997766552 12234444443455445555555443322211  0    13677999999765543

>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
domain: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.0077  Score=48.76  Aligned_cols=144  Identities=10%  Similarity=0.054  Sum_probs=93.6

Q ss_pred             CccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEeEEEEc
Q 020850          125 SPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILT  204 (320)
Q Consensus       125 p~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ldRVvlt  204 (320)
                      |++...+|.+.++++-.-++..  ++    .-|+|+...-.      .++   +...+.++.++...-|+.+.+++|..-
T Consensus        16 ~~~~~~~l~~l~~~l~~~~~~~--~~----~pHiTL~~~~~------~~~---~~~~~~l~~~~~~~~p~~~~~~~~~~~   80 (181)
T d1jh6a_          16 DEESEPRFKKLMEALRSEFTGP--RF----VPHVTVAVSAY------LTA---DEAKKMFESACDGLKAYTATVDRVSTG   80 (181)
T ss_dssp             CTTTHHHHHHHHHHHHHHHTCC--CC----CCCEEEEEEEE------ECH---HHHHHHHHHHHHTCBCEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhhCCC--CC----CCeEEEeecCc------CCH---HHHHHHHHHHHhhCCCeEEEecccccC
Confidence            4556666665555552111111  22    23999954321      122   234456777788888999999999876


Q ss_pred             CCCcEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccc
Q 020850          205 STGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGS  284 (320)
Q Consensus       205 sSGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~  284 (320)
                      ..+--...+.+....+...+++++++.+.....+ .   ..=|.||||.=-.+       +..+.+......+...+.+.
T Consensus        81 ~~~~~~v~~~~~~~~~L~~l~~~l~~~~~~~~~~-~---f~PHiTLa~~~~~~-------~~~~~~~~~~~~~~~~~~~~  149 (181)
T d1jh6a_          81 TFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTT-P---YMPHLSLLYAELTE-------EEKKNAQEKAYTLDSSLDGL  149 (181)
T ss_dssp             EETTEEEEEEECCCHHHHHHHHHHHHHTTCCCCS-C---CCCEEEEECCCCCH-------HHHHHHHHHHHHHCTTCTTC
T ss_pred             CCCceEEEEccCCCHHHHHHHHHHHHhcCcccCC-C---CCCeEEEEecCCCh-------hhHHHHHHHHHHhcccCCCc
Confidence            6665555666665557899999999998765433 3   45599999853211       34445666777888888888


Q ss_pred             eeeeCeeeEE
Q 020850          285 EAVVSELWYV  294 (320)
Q Consensus       285 ~a~~~~lWfV  294 (320)
                      .++++++-.|
T Consensus       150 ~~~vd~i~L~  159 (181)
T d1jh6a_         150 SFRLNRLALC  159 (181)
T ss_dssp             EEEEEEEEEE
T ss_pred             cEEEeEEEEE
Confidence            8998887765

>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: Atu0111-like
domain: Putative phosphoesterase Atu0111
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.77  E-value=0.0023  Score=56.47  Aligned_cols=158  Identities=12%  Similarity=0.118  Sum_probs=89.0

Q ss_pred             EEeecCcc--chhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeec----CCCCCC------CCCChHHHHHHHHHHHHH
Q 020850          120 NVLYLSPK--YSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHA----SHHISP------VPATEDEIEAEATAVRAV  187 (320)
Q Consensus       120 vVl~Lp~~--~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHa----Shh~dP------vpat~~ei~~E~~av~~v  187 (320)
                      +|-++++.  +..+|...=+++..-.+.+-.-+-++++||.|+|--    -...+.      ....-.++..+..+   -
T Consensus        38 iI~~i~~~s~~~~~l~~~q~~l~~~~~~~~~~~LP~sSfHMTLfd~~n~~~r~~~~wP~~l~~d~~~~~~~~~~~~---r  114 (232)
T d2fsqa1          38 VVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRD---R  114 (232)
T ss_dssp             EEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHH---H
T ss_pred             EEEecCCCchHHHHHHHHHHHHHhcCcccceeeCChhhhhHHHhcccccccccCCCCCccCCcccCHHHHHHHHHH---H
Confidence            44577663  334444333333222223334567888899999932    111222      22334444444322   2


Q ss_pred             Hhhc---CccEEEEeEEEEcCCCcEEEEeeecCCCC-----hHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCC
Q 020850          188 AEDL---CPLKIVLDRVILTSTGVLLGCWQVISGTD-----PMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRA  259 (320)
Q Consensus       188 ~~~~---cPi~~~ldRVvltsSGvLL~cwqv~~Gte-----p~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~  259 (320)
                      .+++   .++++.+..  +.+.|++|     .+-+|     .-.+|+.|.+.+.-..+  .+|..+.|.|||=++...  
T Consensus       115 l~~~~~~~~~~~~~~~--~~~~~v~L-----~p~~e~d~~~L~~~R~~l~~l~gi~~~--~h~~Y~fHITLaY~l~~l--  183 (232)
T d2fsqa1         115 LSTFPTLPAFNMRVTG--LRPVGMVM-----KGATAEDDSIVALWRDTFADFFGYRHP--DHDTYEFHITLSYIVSWF--  183 (232)
T ss_dssp             GGGCCCCCCCCEEEEE--EETTEEEE-----EESSHHHHHHHHHHHHHHHHHHTCCCT--TGGGCCEEEECEEESSCB--
T ss_pred             HhcCCCCcceEEEEec--ccccEEEE-----ecCCHHHHHHHHHHHHHHHHHhccCCC--CCceeEEEEEEEeccCCC--
Confidence            3444   455565543  23444443     22222     56688899887755433  334689999999999744  


Q ss_pred             CCCchhHHHHHHHHHHHHHhhhccc--eeeeCeeeEE
Q 020850          260 SPTEPHQLRFLHELVDSLNNQIRGS--EAVVSELWYV  294 (320)
Q Consensus       260 ~~~~~~~~~~~~a~c~~lt~~L~G~--~a~~~~lWfV  294 (320)
                      +.   +....++++.+.+++++...  .+++++.=|+
T Consensus       184 ~~---~e~~~~~~~l~~~~~~~~~~~p~i~l~~~e~c  217 (232)
T d2fsqa1         184 EP---ECLPRWQAMLDEELEKLRVAAPVIQMRPPAFC  217 (232)
T ss_dssp             CG---GGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEE
T ss_pred             Ch---HHHHHHHHHHHHHHHHHHhhCCeeeeCCcceE
Confidence            33   56778899999999998662  4566655443