Citrus Sinensis ID: 020851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDSFHLKLSGTKQSESE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccEccccccHHHHHHHHHHHHHHcccccccccccccEEEEEccccccEcHHHHHcccccccccccEccccccccccccccccHcccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEccccccccccc
Coil and Loop (DISEMBL)
MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLqddnsadgvlelepmdSYNRLLLHRLADIFGfahesvgegvdRHLILERCSETSIDILWqygepqslttshqilrrkeappvlkiqspsgehSLAEREAAYLAARERIFSMdartvaepvrqkprsvpIVAQRMIAHALGqkmksgdqdtAVRDEITNeklaneiniresdkagpntsleayqettllpgqnvnsldksnkkkgkstvssqsdriapqetsekssngvsisrngrstnssnkeyLKEERLGAAKRLFAHALGLqsardsfhlklsgtkqsese
Flexible Loop (DISEMBL)
MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEPQSLTTSHQILRRKEAPPVLkiqspsgehslAEREAAYLAARERIFSmdartvaepvrqkprsvpiVAQRMIAHAlgqkmksgdqdTAVRDEITneklaneiniresdkagpnTSLEAYQettllpgqnvnsldksnkkkgkstvssqsdriapqetsekssngvsisrngrstnssnkeYLKEERLGAAKRLFAHALGLqsardsfhlklsgtkqsese
Low Complexity Region (SEG)
MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSlaereaaylaarerIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDSFHLKLSGTKQSESE
Disordered region (IsUnstruct)
*****FAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEP************************************YLAARERIF********************V****************************************************************************************************************************RLFAHALG*********************
Disordered Region (DISOPRED)
***TQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSET**********************************************************************************************************************************************************************************************************LFAHALGLQS******************
Disordered Region (DISEMBL)
MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHAL***********AVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSL********************************************NKEYLKEERLGAAKRLFAHALGLQSARDSFH************
Disordered Region (DISPRO)
****QFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEP****************************SLAEREAAYLAARERIFSMD**********KPRSVPIVA******************************************************************************************************************KEERLGAAKRLFAHALGLQSARDSFHLKL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSIDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDSFHLKLSGTKQSESE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q15032	1099	R3H domain-containing pro	yes	no	0.45	0.131	0.257	1e-05
Q8MSX1	1818	Protein encore OS=Drosoph	no	no	0.428	0.075	0.289	3e-05
Q9DCB4	807	cAMP-regulated phosphopro	no	no	0.418	0.166	0.261	3e-05
A0JNC2	989	R3H domain-containing pro	no	no	0.440	0.142	0.282	7e-05
Q80TM6	1044	R3H domain-containing pro	no	no	0.440	0.135	0.282	0.0001
Q9UBL0	812	cAMP-regulated phosphopro	no	no	0.268	0.105	0.3	0.0001
Q9Y2K5	976	R3H domain-containing pro	no	no	0.268	0.088	0.3	0.0005

>sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 3   TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
           +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct: 148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 205

Query: 63  LADIFGFAHESVGEGVDRHLILERCSETSI-----------DILWQYGEPQSLTTSHQIL 111
           +A  FG  H     G  + +I+ + S T I           D    + +   L   +   
Sbjct: 206 VAAYFGLDHNVDQSG--KSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSF 263

Query: 112 RRKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDA 150
            + +    ++++      S+ ERE  Y  AR+RIFS D+
Sbjct: 264 DKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDS 302

Homo sapiens (taxid: 9606)

>sp|Q8MSX1|ENC_DROME Protein encore OS=Drosophila melanogaster GN=enc PE=1 SV=2

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 22/159 (13%)

Query: 4   TQFAMVEELAFL---VKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLL 60
           T +   + L F    +  N   ++++L +E+ L++F+Q+ NS        P  SYNR+L+
Sbjct: 422 TDYGGTDLLVFFRDTLNKNPKDRNILLKIEKDLIDFVQE-NSRGCEYRFPPASSYNRMLI 480

Query: 61  HRLADIFGFAHESVGEGVDRHLILERCSETSI-DILWQYGEPQSLT---TSHQILRR--- 113
           HR A  FG  H +V     + +I+     T I +I +     QSL        IL+R   
Sbjct: 481 HRTAAFFGMEH-NVDTETQQCVIVAVAKNTRIPEIRF-----QSLVRDDARKSILKRDTH 534

Query: 114 -----KEAPPVLKIQSPSGEHSLAEREAAYLAARERIFS 147
                +++P +  +       S  ERE  Y  AR RIFS
Sbjct: 535 SFDEVRQSPYLCPLSLDRKAKSFEEREEDYDRARSRIFS 573

Required for the regulation of germline mitosis, karyosome formation, and establishment of dorsoventral (DS) polarity of the egg and embryo. Involved in proper grk mRNA localization and translation in the oocyte. May control germline mitosis by facilitating the cyclin E (CycE) proteolysis by the SCF-ubiquitin-proteasome complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q9DCB4|ARP21_MOUSE cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 13  AFLV---KDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGF 69
            FL+   K+N   + ++L ME+ +++F+ D N  +   +   M SY R+L+HR+A  FG 
Sbjct: 150 GFLINTLKNNSRDRMILLKMEQEMIDFIADSN--NHYKKFPQMSSYQRMLVHRVAAYFGL 207

Query: 70  AHESVGEGVDRHLILERCSETSID---ILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPS 126
            H     G  + +I+ + S T I          + +S  +  + + +++   + K  + +
Sbjct: 208 DHNVDQTG--KSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQN 265

Query: 127 GEH---------SLAEREAAYLAARERIFSMDA 150
             H         S+ ERE  Y   RERIF+ D+
Sbjct: 266 RMHPFRDDRRSKSIEEREEEYQRVRERIFAHDS 298

Isoform 2 may act as a competitive inhibitor of calmodulin-dependent enzymes such as calcineurin in neurons.

Mus musculus (taxid: 10090)

>sp|A0JNC2|R3HD2_BOVIN R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 3   TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
           +T   + E L   +K N   + ++L +E+ +++F+ D+N+     +   M SY+R+LLHR
Sbjct: 149 STGIDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ--FKKFPQMTSYHRMLLHR 206

Query: 63  LADIFGFAHESVGEGVDRHLILERCSETSI--DILWQYGEPQSLTTSHQ--ILRRKEAPP 118
           +A  FG  H     G  + +I+ + S T I      ++ + +  T   Q  IL+R +A  
Sbjct: 207 VAAYFGMDHNVDQTG--KAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASM 264

Query: 119 -------VLKIQSPSGEHSLAEREAAYLAARERIFS 147
                   + +Q      S+ ERE  Y   RERIF+
Sbjct: 265 DRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFA 300

Bos taurus (taxid: 9913)

>sp|Q80TM6|R3HD2_MOUSE R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 3   TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
           +T   + E L   +K N   + ++L +E+ +++F+ D+N+     +   M SY+R+LLHR
Sbjct: 149 STGIDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ--FKKFPQMTSYHRMLLHR 206

Query: 63  LADIFGFAHESVGEGVDRHLILERCSETSI--DILWQYGEPQSLTTSHQ--ILRRKEAP- 117
           +A  FG  H     G  + +I+ + S T I      ++ + +  T   Q  IL+R +A  
Sbjct: 207 VAAYFGMDHNVDQTG--KAVIINKTSSTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASM 264

Query: 118 ------PVLKIQSPSGEHSLAEREAAYLAARERIFS 147
                   + +Q      S+ ERE  Y   RERIF+
Sbjct: 265 DRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFA 300

Mus musculus (taxid: 10090)

>sp|Q9UBL0|ARP21_HUMAN cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 3   TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
           +T   + E L   +K+N   + ++L ME+ +++F+ D+N  +   +   M SY R+L+HR
Sbjct: 144 STGIDLHEFLINTLKNNSRDRMILLKMEQEIIDFIADNN--NHYKKFPQMSSYQRMLVHR 201

Query: 63  LADIFGFAHESVGEGVDRHLILERCSETSI 92
           +A  FG  H     G  + +I+ + S T I
Sbjct: 202 VAAYFGLDHNVDQTG--KSVIINKTSSTRI 229

Isoform 2 may act as a competitive inhibitor of calmodulin-dependent enzymes such as calcineurin in neurons.

Homo sapiens (taxid: 9606)

>sp|Q9Y2K5|R3HD2_HUMAN R3H domain-containing protein 2 OS=Homo sapiens GN=R3HDM2 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 3   TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
           +T   + E L   +K N   + ++L +E+ ++ F+ D+N+     +   M SY+R+LLHR
Sbjct: 149 STGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ--FKKFPQMTSYHRMLLHR 206

Query: 63  LADIFGFAHESVGEGVDRHLILERCSETSI 92
           +A  FG  H     G  + +I+ + S T I
Sbjct: 207 VAAYFGMDHNVDQTG--KAVIINKTSNTRI 234

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
356535242	319	PREDICTED: uncharacterized protein LOC10	0.9	0.902	0.565	1e-87
297735302	309	unnamed protein product [Vitis vinifera]	0.946	0.980	0.539	3e-83
356576648	333	PREDICTED: uncharacterized protein LOC10	0.903	0.867	0.537	6e-83
255543112	339	conserved hypothetical protein [Ricinus	0.962	0.908	0.524	4e-82
449470259	309	PREDICTED: uncharacterized protein LOC10	0.887	0.919	0.493	6e-69
449477683	310	PREDICTED: uncharacterized LOC101211053	0.906	0.935	0.488	2e-68
147810539	279	hypothetical protein VITISV_038499 [Viti	0.865	0.992	0.493	3e-65
242035747	331	hypothetical protein SORBIDRAFT_01g03521	0.868	0.839	0.407	3e-51
357143126	332	PREDICTED: uncharacterized protein LOC10	0.85	0.819	0.424	2e-50
226493570	327	uncharacterized protein LOC100272573 [Ze	0.875	0.856	0.402	6e-50

>gi|356535242|ref|XP_003536157.1| PREDICTED: uncharacterized protein LOC100801478 [Glycine max]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/322 (56%), Positives = 229/322 (71%), Gaps = 34/322 (10%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDN-SADGVLELEPMDSYNRLL 59
           MS TQFAMVEELAFLVKDNLP KHLVL+MEE+LVNFLQDD+ S+DG+LELEPM+SYNRLL
Sbjct: 1   MSMTQFAMVEELAFLVKDNLPCKHLVLTMEESLVNFLQDDDTSSDGILELEPMNSYNRLL 60

Query: 60  LHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYG-EPQSLTTSHQILR 112
           LHRLA+IFGFAHESVGEG DRHLILERC +TSI      DILW+Y  EPQSL TSHQILR
Sbjct: 61  LHRLAEIFGFAHESVGEGDDRHLILERCPDTSIPPVLVSDILWKYDDEPQSLVTSHQILR 120

Query: 113 RKEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMI 172
           R E+ PVL+  + S   SL ER+AAYL ARERIFSM    V EP  QKPRSVP+VA+RMI
Sbjct: 121 RSESSPVLQKNTASLSQSLEERKAAYLIARERIFSMKLEEVKEPGEQKPRSVPVVARRMI 180

Query: 173 AHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAY-QETTLLPGQNVN 231
           AHALGQ++ + +Q+    D + +  L +E+N    DK    ++L+   +E++ L G + N
Sbjct: 181 AHALGQRIHTKNQNDLASDSMKDGVLTDELNAH--DKNMEESTLKKVSEESSHLRGNSNN 238

Query: 232 SLDKS--------NKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLK 283
           S+  +        NK+  ++TV    D+  P E S++   G+S+S          K+Y+K
Sbjct: 239 SIRNTSSSNAASLNKRNDQTTV----DKDLP-EFSQERKQGLSVS----------KDYIK 283

Query: 284 EERLGAAKRLFAHALGLQSARD 305
           +E LGAAKR+FAHALG+ S +D
Sbjct: 284 KEHLGAAKRMFAHALGVHSGKD 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735302|emb|CBI17664.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 176/326 (53%), Positives = 218/326 (66%), Gaps = 23/326 (7%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLL 60
           M+ TQFAMVEELAFL+KDNLP KHLVLS+EEALVNFLQDDNS DGV+ELEPM+ Y RLL+
Sbjct: 1   MTMTQFAMVEELAFLIKDNLPCKHLVLSIEEALVNFLQDDNSLDGVMELEPMNPYERLLV 60

Query: 61  HRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQSLTTSHQILRRK 114
           HRLADIFGFAH S+GEG +RHL LERC ETSI      DI+WQY E Q  T SHQ+LRR 
Sbjct: 61  HRLADIFGFAHVSIGEGDERHLTLERCPETSIPSILVSDIIWQYQESQPPTMSHQLLRRN 120

Query: 115 EAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAH 174
           EA PVLK   PS ++SL EREAAYLAARERIFSMD   + E V+QKPR+VP+VA+RMIAH
Sbjct: 121 EASPVLKATEPSLQYSLEEREAAYLAARERIFSMDEGEIRESVQQKPRNVPVVARRMIAH 180

Query: 175 ALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLD 234
           ALG ++ S +QD         E    E+ +++ D     +S EA Q       +N  S  
Sbjct: 181 ALGHRINSCNQDVK-----ECEGQIAELTVQDKD-----SSAEACQ------NENSRSKT 224

Query: 235 KSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLF 294
                 G   + S   R  PQ+++++S +  S   + R+ +    E  KE  LGAA+R+F
Sbjct: 225 SVGSHNGNGAL-SHGGRKTPQKSADRSPSNSSSPPSRRNRSRVCTENPKEVHLGAARRMF 283

Query: 295 AHALGLQSARDSFHLKLSGTKQSESE 320
           AHALGLQS +D+   K   T+Q  +E
Sbjct: 284 AHALGLQSPKDALISKPGNTQQMNTE 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576648|ref|XP_003556442.1| PREDICTED: uncharacterized protein LOC100793409 [Glycine max]

 Score =  313 bits (803), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 180/335 (53%), Positives = 230/335 (68%), Gaps = 46/335 (13%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDN-SADGVLELEPMDSYNRLL 59
           MS TQFAMVEELAFLVKDNLP KHLVL+MEEALVNFLQDD+ S+DG+LELEPM+SYNRLL
Sbjct: 1   MSMTQFAMVEELAFLVKDNLPCKHLVLTMEEALVNFLQDDDTSSDGILELEPMNSYNRLL 60

Query: 60  LHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQSLTTSHQILRR 113
           LHRLA+IFGFAHESVGEG DRHLILERC +TSI      DILW+Y EPQSL TSHQILRR
Sbjct: 61  LHRLAEIFGFAHESVGEGDDRHLILERCPDTSIPPILVSDILWKYDEPQSLVTSHQILRR 120

Query: 114 KEAPP-----------VLKI-----QSPSGEHSLAEREAAYLAARERIFSMDARTVAEPV 157
             A P           VL +      + S   SL ER+AAYL ARERIFSM    V EP 
Sbjct: 121 SVASPDSCSVLWALIRVLHLLVSQKNTASLSQSLEERKAAYLIARERIFSMKLEEVKEPG 180

Query: 158 RQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLE 217
            QKPRSVP+VA+RMIAHALGQ++ + +Q+    D + +  L +E++ ++ ++   +T  +
Sbjct: 181 EQKPRSVPVVARRMIAHALGQRIHTKNQNDLASDSMKDGVLTDELSAQDKNQE-ESTLKK 239

Query: 218 AYQETTLLPGQNVNSLDKS-------NKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRN 270
             +E++ L G + N +  +       NK+K ++TV    D+  PQ ++E+   G+S+S  
Sbjct: 240 VSEESSHLRGNSNNRIRNNSSNAATLNKRKDQTTV----DKDLPQFSAER-KQGLSVS-- 292

Query: 271 GRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARD 305
                   K+Y+K+E LGAAKR+FAHALG+ S +D
Sbjct: 293 --------KDYMKKEHLGAAKRMFAHALGVHSGKD 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543112|ref|XP_002512619.1| conserved hypothetical protein [Ricinus communis] gi|223548580|gb|EEF50071.1| conserved hypothetical protein [Ricinus communis]

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 184/351 (52%), Positives = 224/351 (63%), Gaps = 43/351 (12%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSA--DGVLELEPMDSYNRL 58
           MS TQFAMVEELA+LVKDNL  KHLVLSME+A VNFLQD+N++  DG+LELEPMDSY+RL
Sbjct: 1   MSVTQFAMVEELAYLVKDNLRCKHLVLSMEDAFVNFLQDNNTSTDDGILELEPMDSYSRL 60

Query: 59  LLHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQSLTTSHQILR 112
           LLHRLADIFGFAH SVGEG +RHLILERC ETS+      DIL+QY EP+ LT SHQ+LR
Sbjct: 61  LLHRLADIFGFAHVSVGEGDERHLILERCPETSVPSILVNDILFQYDEPEPLTMSHQLLR 120

Query: 113 RKEAPP-----------------------VLKIQSPSGEHSLAEREAAYLAARERIFSMD 149
           R  A P                       VLK +SPS   +L EREAAY AARERIFS+D
Sbjct: 121 RDGASPAIGYVPILDALNVEISYQLMLVSVLKEKSPSF-LTLEEREAAYSAARERIFSVD 179

Query: 150 ARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDK 209
              + EP RQKPR+VP+VA+RMIAHALGQK+    Q      E+    L    N+++ DK
Sbjct: 180 VGEMKEPQRQKPRNVPVVARRMIAHALGQKLSP--QKNCKGYEVQTTLL----NVQDKDK 233

Query: 210 AGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISR 269
             P   +E ++ T   P + V+S DK+     + + SS   R      + K S  +S S 
Sbjct: 234 IDP---MEDFEGTIFQPQKYVDSHDKAKSNNRQCSASSPGKRNMSHAPACKMSTDMSTSH 290

Query: 270 NGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDSFHLKLSGTKQSESE 320
           NG S N   KEY KEE +GAAKR+ AHALGLQS++     + S TK  + E
Sbjct: 291 NGSSRNRV-KEYSKEEHVGAAKRMLAHALGLQSSKGGL-ARCSATKPVDME 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470259|ref|XP_004152835.1| PREDICTED: uncharacterized protein LOC101211053 [Cucumis sativus]

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 192/308 (62%), Gaps = 24/308 (7%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLL 60
           M+  QFAMVEELAFLVKDNLPSKHL+LSMEE  +NFL ++ S+DG+LEL+PMDSYNRLLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLL 60

Query: 61  HRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQSLTTSHQILRRK 114
           HRLADIFG  H SVGEG +RHL+LER  E+SI      DILW+Y EPQ  T  HQ+LRRK
Sbjct: 61  HRLADIFGLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRK 120

Query: 115 EAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAH 174
           E          S + SL EREAAYLA RERIF        EP++ KPR  P VA+RMIAH
Sbjct: 121 EN-SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAH 179

Query: 175 ALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNV---N 231
           ALGQ++ S  +DT    +     + N   I+  D   P++++EA  +T     Q V   N
Sbjct: 180 ALGQRVNSLSEDTNCHQK-EQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKN 238

Query: 232 SLDKSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAK 291
            LDK+          S + ++ P ++  K+S+              + E+LK E LGAAK
Sbjct: 239 ELDKNCNPDVSLARGSTAAKMKPAKSYPKASH-------------VDNEHLKREHLGAAK 285

Query: 292 RLFAHALG 299
           R+F+ ALG
Sbjct: 286 RMFSQALG 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477683|ref|XP_004155092.1| PREDICTED: uncharacterized LOC101211053 [Cucumis sativus]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/315 (48%), Positives = 195/315 (61%), Gaps = 25/315 (7%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDD-NSADGVLELEPMDSYNRLL 59
           M+  QFAMVEELAFLVKDNLPSKHL+LSMEE  +NFL D+ +S+DG+LEL+PMDSYNRLL
Sbjct: 1   MTVAQFAMVEELAFLVKDNLPSKHLILSMEETFINFLHDETSSSDGILELKPMDSYNRLL 60

Query: 60  LHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQSLTTSHQILRR 113
           LHRLADIFG  H SVGEG +RHL+LER  E+SI      DILW+Y EPQ  T  HQ+LRR
Sbjct: 61  LHRLADIFGLGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRR 120

Query: 114 KEAPPVLKIQSPSGEHSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIA 173
           KE          S + SL EREAAYLA RERIF        EP++ KPR  P VA+RMIA
Sbjct: 121 KEN-SSASSTKSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIA 179

Query: 174 HALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNV--- 230
           HALGQ++ S  +DT    +     + N   I+  D   P++++EA  +T     Q V   
Sbjct: 180 HALGQRVNSLSEDTNCHQK-EQGGVTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLK 238

Query: 231 NSLDKSNKKKGKSTVSSQSDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAA 290
           N LDK+          S + ++ P ++  K+S+              + E+LK E LGAA
Sbjct: 239 NELDKNCNPDVSLARGSTAAKMKPAKSYPKASH-------------VDNEHLKREHLGAA 285

Query: 291 KRLFAHALGLQSARD 305
           KR+F+ ALG    R+
Sbjct: 286 KRMFSQALGKHCRRN 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810539|emb|CAN65177.1| hypothetical protein VITISV_038499 [Vitis vinifera]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/312 (49%), Positives = 194/312 (62%), Gaps = 35/312 (11%)

Query: 9   VEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFG 68
           VEELAFL+KDNLP KHLVLS+EEALVNFLQDDNS DGV+ELEPM+ Y RLL+HRLADIFG
Sbjct: 3   VEELAFLIKDNLPCKHLVLSIEEALVNFLQDDNSLDGVMELEPMNPYERLLVHRLADIFG 62

Query: 69  FAHESVGEGVDRHLILERCSETSIDILWQYGEPQSLTTSHQILRRKEAPPVLKIQSPSGE 128
            +            IL        DI+WQY E Q  T SHQ+LRR EA PVLK   PS +
Sbjct: 63  PS------------ILVS------DIIWQYQESQPPTMSHQLLRRNEASPVLKATEPSLQ 104

Query: 129 HSLAEREAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTA 188
           +SL EREAAYLAARERIFSMD   + E V+QKPR+VP+VA+RMIAHALG ++ S +QD  
Sbjct: 105 YSLEEREAAYLAARERIFSMDEGEIRESVQQKPRNVPVVARRMIAHALGHRINSCNQDVK 164

Query: 189 VRDEITNEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQ 248
                  E    E+ +++ D     +S EA Q       +N  S        G   + S 
Sbjct: 165 -----ECEGQIAELTVQDKD-----SSAEACQ------NENSRSKTSVGSHNGNGAL-SH 207

Query: 249 SDRIAPQETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDSFH 308
             R  PQ+++++S +  S   + R+ +    E  KE  LGAA+R+FAHALGLQS +D+  
Sbjct: 208 GGRKTPQKSADRSPSNSSSPPSRRNRSRVCTENPKEVHLGAARRMFAHALGLQSPKDALI 267

Query: 309 LKLSGTKQSESE 320
            K   T+Q  +E
Sbjct: 268 SKPGNTQQMNTE 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242035747|ref|XP_002465268.1| hypothetical protein SORBIDRAFT_01g035210 [Sorghum bicolor] gi|241919122|gb|EER92266.1| hypothetical protein SORBIDRAFT_01g035210 [Sorghum bicolor]

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/351 (40%), Positives = 186/351 (52%), Gaps = 73/351 (20%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQ------------DDNSADGVLE 48
           M+TTQFAMVEELA L+KDNL SKHL+LS EE+L+  LQ            +D  A   +E
Sbjct: 1   MATTQFAMVEELASLIKDNLHSKHLILSTEESLIAALQQLHCRDGDGDLEEDGDAADTIE 60

Query: 49  LEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQ 102
           L+P  +Y+RLLLHRLA+I+GFAHESVGEG DRHL+L+RC ET+I      D+LW++    
Sbjct: 61  LQPAGAYHRLLLHRLAEIYGFAHESVGEGEDRHLVLQRCPETAIPSVLVSDMLWKFDYSD 120

Query: 103 SLTTSHQILRR--------------KEAPPV-------------LKIQSPSGEHSLAERE 135
            LT+   +L R              KEA  V             LK  +     SL ERE
Sbjct: 121 DLTSV--VLTRNDTDFQKPQKADVAKEAVSVKNSHLKDNTDLKPLKQPAVLPAASLKERE 178

Query: 136 AAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITN 195
           AAY AARERIFS D     +    K R VP+VAQRMIAHALGQK+++   DT    E   
Sbjct: 179 AAYRAARERIFSGDDPKGNDRSHMKCRQVPVVAQRMIAHALGQKVQN-TTDTVASTESRG 237

Query: 196 EKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAPQ 255
           ++L+N  NI              +      P   V   ++   + GK   +  +    P 
Sbjct: 238 KQLSNGKNI------------PTHSRNNFCP---VTPDNREAVRNGKPNSAGSNSYQTPS 282

Query: 256 ETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDS 306
               +++N          T +   E LK+E+ GAAKR+FAHALGL +AR S
Sbjct: 283 SQRCRTTN----------TRAVTAESLKKEQTGAAKRMFAHALGLSAARGS 323

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357143126|ref|XP_003572812.1| PREDICTED: uncharacterized protein LOC100822764 [Brachypodium distachyon]

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 147/346 (42%), Positives = 182/346 (52%), Gaps = 74/346 (21%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQ----DDNSAD----------GV 46
           M TTQFAM+EELA L+KDNL SKHLVLS EEALV  LQ    DD+  D            
Sbjct: 1   MDTTQFAMIEELASLIKDNLYSKHLVLSTEEALVALLQQHYQDDDEHDRSAHHGAIGSNT 60

Query: 47  LELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQY-- 98
           +EL+P  SYNRLLLHRLADIFGFAHESVGEG DRHL+L+RC ET+I      D+LW+Y  
Sbjct: 61  IELQPTSSYNRLLLHRLADIFGFAHESVGEGDDRHLVLQRCPETAIPPVLISDVLWKYDD 120

Query: 99  --GEPQSL--------------------TTSHQILRRKEAPPVLKIQ--SPSGEHSLAER 134
             G   S+                    T S + L  K    V  +Q  +P    SL ER
Sbjct: 121 GNGSSASVVLTRNETDLQNTYEAEDVQDTISFESLNLKTDTDVKPLQHPAPPSAASLKER 180

Query: 135 EAAYLAARERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEIT 194
           EAAY AARERIF+       +    K R VP VAQRMIAHALG++++   + TAV     
Sbjct: 181 EAAYRAARERIFATHETKEKDTSAAKSRHVPAVAQRMIAHALGKRVEDPKERTAV----V 236

Query: 195 NEKLANEINIRESDKAGPNTSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAP 254
             +    +N R    +  N +L A +     PG   N + + N               +P
Sbjct: 237 KNRGKEPVNGRYVQTSSTN-NLCADK-----PGSRENHVGRCNSS-------------SP 277

Query: 255 QETSEKSSNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGL 300
              S +S      S   R T+S + E LK+E+ GAAKR+FAHAL L
Sbjct: 278 DGNSYRSP-----SAQTRQTSSVSAETLKKEQTGAAKRMFAHALRL 318

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226493570|ref|NP_001140511.1| uncharacterized protein LOC100272573 [Zea mays] gi|194699778|gb|ACF83973.1| unknown [Zea mays] gi|413955709|gb|AFW88358.1| hypothetical protein ZEAMMB73_214917 [Zea mays]

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 139/345 (40%), Positives = 188/345 (54%), Gaps = 65/345 (18%)

Query: 1   MSTTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQ-------DDNSADGVLELEPMD 53
           M+TTQFAMVEELA L+KDNL SKHL+LS EE+LV  LQ       DD +AD  +EL+P  
Sbjct: 1   MATTQFAMVEELASLIKDNLHSKHLILSTEESLVAALQELHCREEDDGAAD-TIELQPAG 59

Query: 54  SYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSETSI------DILWQYG-------- 99
           +Y+RLLLHRLA+I+GFAHES GEG DRHL+L+RC ET+I      D++W++         
Sbjct: 60  AYHRLLLHRLAEIYGFAHESAGEGEDRHLVLQRCPETAIPSVLVSDMIWKFDNSDDFMSV 119

Query: 100 ----------EPQSLTTSHQIL-----RRKEAPPVLKIQSPS--GEHSLAEREAAYLAAR 142
                     +PQ      + +     R K+      ++ P+     SL EREAAY AAR
Sbjct: 120 VLTRNDTDFQKPQKADIVQKDISVKSSRLKDNTDSKPLRQPAVHPAASLKEREAAYRAAR 179

Query: 143 ERIFSMDARTVAEPVRQKPRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEI 202
           ERIFS+D     +    K R VP+VAQRMIAHALGQK+++           T E +A+  
Sbjct: 180 ERIFSVDDAKGNDRSYVKCRQVPVVAQRMIAHALGQKVQN-----------TTEAVAS-T 227

Query: 203 NIRESDKAGPN-TSLEAYQETTLLPGQNVNSLDKSNKKKGKSTVSSQSDRIAPQETSEKS 261
             R   K  PN  S+  +      P   V   +K   + G+   +  +    P      +
Sbjct: 228 ESRGKHKQLPNGKSIPTHSRNNFCP---VTPDNKEAVRNGRPNSAGCNSYQTPSSQRRHT 284

Query: 262 SNGVSISRNGRSTNSSNKEYLKEERLGAAKRLFAHALGLQSARDS 306
           +N  +++  G          LK+E+ GAAKR+FAHALGL +AR S
Sbjct: 285 TNTRAVTAEG----------LKKEQTGAAKRMFAHALGLSAARGS 319

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
UNIPROTKB|H7C1B6	145	ARPP21 "cAMP-regulated phospho	0.268	0.593	0.3	1.3e-05
UNIPROTKB|H7C0P9	124	ARPP21 "cAMP-regulated phospho	0.25	0.645	0.288	7.4e-05
UNIPROTKB|F1S0D6	785	R3HDM1 "Uncharacterized protei	0.268	0.109	0.311	0.00014
UNIPROTKB|I3LGQ7	115	LOC100736912 "Uncharacterized	0.2	0.556	0.323	0.00034
UNIPROTKB|E1BDH6	1098	R3HDM1 "Uncharacterized protei	0.268	0.078	0.3	0.00041
UNIPROTKB|E9PG42	1044	R3HDM1 "R3H domain-containing	0.268	0.082	0.3	0.00057
UNIPROTKB|G5E9G8	971	R3HDM1 "R3H domain containing	0.268	0.088	0.3	0.00061
UNIPROTKB|Q15032	1099	R3HDM1 "R3H domain-containing	0.268	0.078	0.3	0.00063
UNIPROTKB|E9PBB4	1100	R3HDM1 "R3H domain-containing	0.268	0.078	0.3	0.00064
UNIPROTKB|E2RJ05	1103	R3HDM1 "Uncharacterized protei	0.268	0.077	0.3	0.00064

UNIPROTKB|H7C1B6 ARPP21 "cAMP-regulated phosphoprotein 21" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L ME+ +++F+ D+N+     +   M SY R+L+HR
Sbjct:     7 STGIDLHEFLINTLKNNSRDRMILLKMEQEIIDFIADNNNH--YKKFPQMSSYQRMLVHR 64

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:    65 VAAYFGLDHNVDQTG--KSVIINKTSSTRI 92

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|H7C0P9 ARPP21 "cAMP-regulated phosphoprotein 21" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 26/90 (28%), Positives = 45/90 (50%)

Query:    25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLIL 84
             ++L ME+ +++F+ D+N+     +   M SY R+L+HR+A  FG  H     G  + +I+
Sbjct:     7 ILLKMEQEIIDFIADNNNH--YKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTG--KSVII 62

Query:    85 ERCSETSIDI------LWQYGEPQSLTTSH 108
              + S T I        LW+ G  +     H
Sbjct:    63 NKTSSTRIQFAPRKAFLWKTGATEMAQGEH 92

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1S0D6 R3HDM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 109 (43.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 28/90 (31%), Positives = 51/90 (56%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +L PM SY+R+LLHR
Sbjct:   148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KLPPMTSYHRMLLHR 205

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   206 VAAYFGLDHNVDQSG--KSVIVNKTSNTRI 233

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|I3LGQ7 LOC100736912 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 95 (38.5 bits), Expect = 0.00034, P = 0.00034
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query:    25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLIL 84
             ++L +E+ ++ F+ D+N+     +   M SY+R+LLHR+A  FG  H     G  + +I+
Sbjct:     2 MLLKLEQEILEFINDNNNQ--FKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG--KAVII 57

Query:    85 ERCSETSI 92
              + S T I
Sbjct:    58 NKTSNTRI 65

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1BDH6 R3HDM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct:   148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 205

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   206 VAAYFGLDHNVDQSG--KAVIVNKTSNTRI 233

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PG42 R3HDM1 "R3H domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct:    92 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 149

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   150 VAAYFGLDHNVDQSG--KSVIVNKTSNTRI 177

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G5E9G8 R3HDM1 "R3H domain containing 1, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct:   104 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 161

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   162 VAAYFGLDHNVDQSG--KSVIVNKTSNTRI 189

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15032 R3HDM1 "R3H domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 0.00063, Sum P(2) = 0.00063
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct:   148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 205

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   206 VAAYFGLDHNVDQSG--KSVIVNKTSNTRI 233

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E9PBB4 R3HDM1 "R3H domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct:   148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 205

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   206 VAAYFGLDHNVDQSG--KSVIVNKTSNTRI 233

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RJ05 R3HDM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 105 (42.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query:     3 TTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHR 62
             +T   + E L   +K+N   + ++L +E+ +++F+ ++ S     +  PM SY+R+LLHR
Sbjct:   148 STGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRK--KFPPMTSYHRMLLHR 205

Query:    63 LADIFGFAHESVGEGVDRHLILERCSETSI 92
             +A  FG  H     G  + +I+ + S T I
Sbjct:   206 VAAYFGLDHNVDQSG--KSVIVNKTSNTRI 233

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
cd02642	63	cd02642, R3H_encore_like, R3H domain of encore-lik	1e-16
cd02325	59	cd02325, R3H, R3H domain	3e-12
pfam01424	55	pfam01424, R3H, R3H domain	6e-08
smart00393	79	smart00393, R3H, Putative single-stranded nucleic	5e-07
cd02646	58	cd02646, R3H_G-patch, R3H domain of a group of fun	2e-05
cd02641	60	cd02641, R3H_Smubp-2_like, R3H domain of Smubp-2_l	7e-05
cd02636	61	cd02636, R3H_sperm-antigen, R3H domain of a group	8e-05
pfam12752	57	pfam12752, SUZ, SUZ domain	2e-04

>gnl|CDD|100071 cd02642, R3H_encore_like, R3H domain of encore-like and DIP1-like proteins

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 22 SKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRH 81
           +  VL +E+ L+ F++D       LEL PM+SY RLL HR+A  +G  H     G  + 
Sbjct: 1  DRLFVLKLEKDLLAFIKDST--RQSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSG-GKC 57

Query: 82 LILERC 87
          +I+ + 
Sbjct: 58 VIVNKT 63

Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 63

>gnl|CDD|100064 cd02325, R3H, R3H domain

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 26 VLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILE 85
              EE L  F +D       LEL PM+SY R L+H LA+ +G   ES GEG +R +++ 
Sbjct: 1  REEREEELEAFAKDAAGKS--LELPPMNSYERKLIHDLAEYYGLKSESEGEGPNRRVVIT 58

Query: 86 R 86
          +
Sbjct: 59 K 59

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 59

>gnl|CDD|216493 pfam01424, R3H, R3H domain

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 30 EEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86
          EE + + +   N     + L PM SY R L+H+LA+ FG   ES GEG  R +++ +
Sbjct: 1  EEEIADRVDSTNK---SVFLPPMTSYERKLIHQLAEEFGLESESFGEGPKRRVVISK 54

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA. Length = 55

>gnl|CDD|214647 smart00393, R3H, Putative single-stranded nucleic acids-binding domain

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 8  MVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF 67
           ++ L++  +           + E  +   +   S    +EL PM+SY R ++H LA+ +
Sbjct: 7  TLDALSYRPRR-------REELIELELEIARFVKSTKESVELPPMNSYERKIVHELAEKY 59

Query: 68 GFAHESVGEGVDRHLILER 86
          G   ES GEG  R +++ +
Sbjct: 60 GLESESFGEGPKRRVVISK 78

Length = 79

>gnl|CDD|100075 cd02646, R3H_G-patch, R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 36 FLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86
          FL D   +   L   PMD + R  +H+LA+ +    +S G+G  R + + +
Sbjct: 11 FLLDSRDS---LSFPPMDKHGRKTIHKLANCYNLKSKSRGKGKKRFVTVTK 58

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 58

>gnl|CDD|100070 cd02641, R3H_Smubp-2_like, R3H domain of Smubp-2_like proteins

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 26 VLSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLIL 84
          V  ++  +  F++D  + +  LE  P + S++RLL+H LA+  G  HES GEG DR + +
Sbjct: 1  VKHLKAMVKAFMKDPKATE--LEFPPTLSSHDRLLVHELAEELGLRHESTGEGSDRVITV 58

Query: 85 ER 86
           +
Sbjct: 59 SK 60

Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA. Length = 60

>gnl|CDD|100065 cd02636, R3H_sperm-antigen, R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 28 SMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGE-GVDRHLIL 84
          SME+ +  F++D        + +PMD   R ++H +A++ G    S GE  VDR++++
Sbjct: 3  SMEKEVSKFIKDSVRT--REKFQPMDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMI 58

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner. Length = 61

>gnl|CDD|221752 pfam12752, SUZ, SUZ domain

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 130 SLAEREAAYLAARERIFSMDA 150
           SL EREA Y  ARERIF   +
Sbjct: 37  SLEEREAEYAEARERIFGSSS 57

The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterized in the C.elegans protein Szy-20 where it has been shown to bind RNA and allow their localization to the centrosome. Warning- the domain has a compositionally biased character. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
cd02642	63	R3H_encore_like R3H domain of encore-like and DIP1	99.85
PF01424	63	R3H: R3H domain; InterPro: IPR001374 The R3H motif	99.59
cd06006	59	R3H_unknown_2 R3H domain of a group of fungal prot	99.54
cd02636	61	R3H_sperm-antigen R3H domain of a group of metazoa	99.51
smart00393	79	R3H Putative single-stranded nucleic acids-binding	99.51
cd02646	58	R3H_G-patch R3H domain of a group of fungal and pl	99.49
cd02325	59	R3H R3H domain. The name of the R3H domain comes f	99.48
cd02641	60	R3H_Smubp-2_like R3H domain of Smubp-2_like protei	99.47
cd02643	74	R3H_NF-X1 R3H domain of the X1 box binding protein	99.4
PF12752	59	SUZ: SUZ domain; InterPro: IPR024771 The SUZ domai	99.38
cd02640	60	R3H_NRF R3H domain of the NF-kappaB-repression fac	99.3
cd06007	59	R3H_DEXH_helicase R3H domain of a group of protein	99.28
KOG2953	432	consensus mRNA-binding protein Encore [RNA process	99.12
cd02644	67	R3H_jag R3H domain found in proteins homologous to	98.99
cd02645	60	R3H_AAA R3H domain of a group of proteins with unk	98.73
cd02638	62	R3H_unknown_1 R3H domain of a group of eukaryotic	98.51
cd02639	60	R3H_RRM R3H domain of mainly fungal proteins which	98.21
COG1847	208	Jag Predicted RNA-binding protein [General functio	97.84
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	96.35
cd02637	65	R3H_PARN R3H domain of Poly(A)-specific ribonuclea	95.45

>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins

Probab=99.85  E-value=1.5e-21  Score=147.45  Aligned_cols=63  Identities=37%  Similarity=0.712  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851           22 SKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC   87 (320)
Q Consensus        22 DR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt   87 (320)
                      ||+|||+||++|..||+++..  ..++|||||||+|+|||+||+||||.|+|+|+| +|+|+|.||
T Consensus         1 dr~~~l~~E~~i~~Fi~~~~~--~~~~f~pm~sy~RllvH~la~~~gL~s~s~~~~-~r~vvv~kt   63 (63)
T cd02642           1 DRLFVLKLEKDLLAFIKDSTR--QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSG-GKCVIVNKT   63 (63)
T ss_pred             CchHHHHHHHHHHHHHhCCCC--CeeEcCCCCcHHHHHHHHHHHHhCCeeEeecCC-ceEEEEEeC
Confidence            799999999999999999953  469999999999999999999999999999988 899999986

Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids

Probab=99.59  E-value=2.6e-15  Score=111.64  Aligned_cols=62  Identities=32%  Similarity=0.680  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851           23 KHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC   87 (320)
Q Consensus        23 R~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt   87 (320)
                      |..|+++++++++|+.++..   ++.|||||+|+|++||++|++|||.|.|.|+|+.|+|+|+|+
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~---~~~f~pm~~~~R~~iH~~a~~~gL~s~S~g~~~~R~vvv~k~   63 (63)
T PF01424_consen    2 REELEKIEEKLIEFFLSSGE---SLEFPPMNSFERKLIHELAEYYGLKSKSEGEGPNRRVVVSKT   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHCSS---EEEEEC--SHHHHHHHHHHHHCTEEEEEESSSSSSEEEEEES
T ss_pred             hHHHHHHHHHHHHHHHcCCC---EEEECCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEeC
Confidence            57899999999999977663   699999999999999999999999999999999999999985

The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.

>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function

Probab=99.54  E-value=1.7e-14  Score=108.94  Aligned_cols=58  Identities=28%  Similarity=0.485  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           27 LSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        27 LkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      .++|+.|..||+|...  .++.|||||+++|.+||+||++|||.++|+|.+++|+|+|.|
T Consensus         2 ~~~E~~l~~fv~d~~~--~~~~f~pM~~~~R~~vHdla~~~gl~SeS~d~Ep~R~V~v~k   59 (59)
T cd06006           2 QQIESTLRKFINDKSK--RSLRFPPMRSPQRAFIHELAKDYGLYSESQDPEPKRSVFVKK   59 (59)
T ss_pred             hhHHHHHHHHHhCCCC--CceeCCCCCHHHHHHHHHHHHHcCCeeEecCCCCCcEEEEeC
Confidence            3789999999999854  469999999999999999999999999999999999999975

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7

Probab=99.51  E-value=3.1e-14  Score=108.32  Aligned_cols=57  Identities=32%  Similarity=0.570  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccC-CceEEEEec
Q 020851           28 SMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEG-VDRHLILER   86 (320)
Q Consensus        28 kLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG-~dR~VVV~K   86 (320)
                      ++|+.+..||+|+..  ..++|||||+|+|.+||++|+..||.++|+|+| ++|+|||++
T Consensus         3 ~~e~~~~~f~~d~~~--~~~~l~pM~~~eRkivHDv~~~~Gl~S~S~Geee~~R~VVv~~   60 (61)
T cd02636           3 SMEKEVSKFIKDSVR--TREKFQPMDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMIFK   60 (61)
T ss_pred             hHHHHHHHHhhcccc--cccccCCCCHHHHHHHHHHHHhcCceeEecCCCCCceEEEEec
Confidence            689999999999864  458999999999999999999999999999975 999999986

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>smart00393 R3H Putative single-stranded nucleic acids-binding domain

Probab=99.51  E-value=1.3e-14  Score=113.22  Aligned_cols=72  Identities=26%  Similarity=0.525  Sum_probs=64.5

Q ss_pred             HHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851           13 AFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC   87 (320)
Q Consensus        13 ~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt   87 (320)
                      .+...-.++.+.+|.+++.++.+|+....   ..+.|||||+|+|.+||++|+.|||.|.|.|+|+.|+|+|.+.
T Consensus         8 ~d~~~~~~~~~~~l~~~~~~~~~~v~~~~---~~~~~~pm~~~~R~~iH~~a~~~~l~s~S~g~g~~R~vvv~~~   79 (79)
T smart00393        8 LDALSYRPRRREELIELELEIARFVKSTK---ESVELPPMNSYERKIVHELAEKYGLESESFGEGPKRRVVISKK   79 (79)
T ss_pred             EECCccCHHHHHHHHHHHHHHHHHHhccC---CeEEcCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeC
Confidence            34444578899999999999999999876   3599999999999999999999999999999999999999863

>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain

Probab=99.49  E-value=5.7e-14  Score=104.61  Aligned_cols=58  Identities=26%  Similarity=0.543  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           26 VLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        26 LLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      |..++++|..|+.++.   ..+.||||++++|.+||++|+.|||.+.|.|.|+.|+|+|+|
T Consensus         1 ~~~i~~~i~~F~~~~~---~~~~fppm~~~~R~~vH~lA~~~~L~S~S~G~g~~R~v~v~k   58 (58)
T cd02646           1 IEDIKDEIEAFLLDSR---DSLSFPPMDKHGRKTIHKLANCYNLKSKSRGKGKKRFVTVTK   58 (58)
T ss_pred             ChHHHHHHHHHHhCCC---ceEecCCCCHHHHHHHHHHHHHcCCcccccccCCceEEEEEC
Confidence            3578999999999985   469999999999999999999999999999999999999986

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02325 R3H R3H domain

Probab=99.48  E-value=7.7e-14  Score=99.02  Aligned_cols=59  Identities=41%  Similarity=0.688  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           26 VLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        26 LLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      +.++|+.|..|+++...  ..+.|||||+|+|++||++|++|||.+.|.|.|+.|+|+|.+
T Consensus         1 ~~~~~~~l~~f~~~~~~--~~~~~~p~~~~~R~~vH~la~~~~L~s~s~g~~~~r~v~i~~   59 (59)
T cd02325           1 REEREEELEAFAKDAAG--KSLELPPMNSYERKLIHDLAEYYGLKSESEGEGPNRRVVITK   59 (59)
T ss_pred             ChHHHHHHHHHHHhhcC--CeEEcCCCCHHHHHHHHHHHHHCCCEEEEecCCCCcEEEEeC
Confidence            36789999999999953  459999999999999999999999999999999999999874

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins

Probab=99.47  E-value=1e-13  Score=104.42  Aligned_cols=58  Identities=36%  Similarity=0.669  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           27 LSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        27 LkLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      .++++.|..|++++..  ..+.||| ||+++|.+||+||+.|||.|.|.|.|++|+|+|.|
T Consensus         2 ~~~~~~i~~F~~~~~~--~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~G~g~~R~v~v~k   60 (60)
T cd02641           2 KHLKAMVKAFMKDPKA--TELEFPPTLSSHDRLLVHELAEELGLRHESTGEGSDRVITVSK   60 (60)
T ss_pred             hhHHHHHHHHHcCCCc--CcEECCCCCCHHHHHHHHHHHHHcCCceEeeCCCCceEEEeeC
Confidence            4679999999999874  3599999 99999999999999999999999999999999975

Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.

>cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins

Probab=99.40  E-value=4.9e-13  Score=104.39  Aligned_cols=67  Identities=22%  Similarity=0.410  Sum_probs=58.0

Q ss_pred             HhcCcchhHHHHHHHHHHHHHhhCCCC---CCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEe
Q 020851           16 VKDNLPSKHLVLSMEEALVNFLQDDNS---ADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILE   85 (320)
Q Consensus        16 LK~NprDR~fLLkLEedIi~FIqds~~---~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~   85 (320)
                      .++||.   |+.++|+.|..|+.+...   +...+.|||||+|+|.+||++|++|||.++|.|+|+.|+|||+
T Consensus         4 ~~~~~~---~~~~vE~~l~~la~~~~~~~~~~~~~~l~PM~~~eR~iIH~la~~~~l~S~S~G~ep~R~VvI~   73 (74)
T cd02643           4 AKKDPK---FVKDVEKDLIELVESVNKGKQTSRSHSFPPMNREKRRIVHELAEHFGIESVSYDQEPKRNVVAT   73 (74)
T ss_pred             HHHCHH---HHHHHHHHHHHHHHHHHhccccCCeeECCCCCHHHHHHHHHHHhhCCCEEEecCCCCCceEEEe
Confidence            445665   999999999999997421   1236999999999999999999999999999999999999986

Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids

Probab=99.38  E-value=5.9e-13  Score=99.87  Aligned_cols=46  Identities=33%  Similarity=0.439  Sum_probs=36.1

Q ss_pred             CCcceeeecCCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHHhhccCCC
Q 020851          105 TTSHQILRRKEAPPV------------LKIQSPSGEHSLAEREAAYLAARERIFSMDA  150 (320)
Q Consensus       105 ~p~~kIMrR~~~~~d------------~k~~~~~~~kSlEEREeeY~rAReRIF~~~~  150 (320)
                      .|+++||||+.....            .........+|+||||++|++||+|||++++
T Consensus         2 ~p~~~IlkRp~~~~~~~~~~~~~~~~~~~~~~~~~~kSlEERE~eY~~AR~RIFg~~~   59 (59)
T PF12752_consen    2 KPKRKILKRPSKGSSSSDSGSSGSSPNSSSRKKRPSKSLEEREAEYAEARARIFGSSE   59 (59)
T ss_pred             CCCCeEecCCCCCCCcccccccccCCCcccccccccCCHHHHHHHHHHHHHHHhCCCC
Confidence            468999999754321            1224578999999999999999999999864

It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].

>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF)

Probab=99.30  E-value=5.5e-12  Score=95.44  Aligned_cols=57  Identities=25%  Similarity=0.540  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           28 SMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        28 kLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      .+++.|.+|+++...  ..+.||| |++++|.+||++|..+||.|.|.|.|.+|+|+|+|
T Consensus         3 ~~~~~i~~F~~s~~~--~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~k   60 (60)
T cd02640           3 DYRQIIQNYAHSDDI--RDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGNDRYLVISK   60 (60)
T ss_pred             hHHHHHHHHHcCCcc--ceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCCCeEEEEeC
Confidence            468899999998854  3599999 99999999999999999999999999999999975

NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases

Probab=99.28  E-value=7.2e-12  Score=94.58  Aligned_cols=56  Identities=27%  Similarity=0.511  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           28 SMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        28 kLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      .+++.|.+|++++ .  ..+.||| |++++|.+||++|..+||.|.|.|.|.+|+|+|.|
T Consensus         3 ~i~~~i~~F~~~~-~--~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~K   59 (59)
T cd06007           3 AINKALEDFRASD-N--EEYEFPSSLTNHERAVIHRLCRKLGLKSKSKGKGSNRRLSVYK   59 (59)
T ss_pred             cHHHHHHHHHcCc-c--cEEEcCCCCCHHHHHHHHHHHHHcCCCceeecCCCCeEEEEeC
Confidence            5788999999988 3  3599999 99999999999999999999999999999999976

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>KOG2953 consensus mRNA-binding protein Encore [RNA processing and modification]

Probab=99.12  E-value=6.8e-11  Score=117.89  Aligned_cols=156  Identities=20%  Similarity=0.183  Sum_probs=113.9

Q ss_pred             cchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCC-ChHHHHHHHHHHHHhCCeeeecc------cCC
Q 020851            6 FAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPM-DSYNRLLLHRLADIFGFAHESVG------EGV   78 (320)
Q Consensus         6 ~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPM-NSY~RlLVHRlAeyfGL~h~S~G------eG~   78 (320)
                      ....-|+++.+ +|||.|..|+++|.+|.+|+++...++  .+||+. .+|.|++.|++|+.|||......      ++.
T Consensus        94 ~~~dy~~ve~~-qnpR~~~~lsR~El~~~~~~Q~~~~qq--t~~q~~~ts~~~~~~~rvaq~y~l~T~~~p~~~~~~~p~  170 (432)
T KOG2953|consen   94 QAVDYFLVEAL-QNPRHRLTLSRKELDIQCQFQGPVQQQ--TEFQNYPTSYLRLAAHRVAQHYGLATTGEPSYISGIDPY  170 (432)
T ss_pred             hcccHHHHhhh-hcchhhhhhhcccchhhhhhcCccccc--ccCCCccccchhhhhcccccccccccccccccccccCch
Confidence            34556899999 589999999999999999999998644  999998 89999999999999998877532      333


Q ss_pred             ceEEEEeccCCcce------eeeccCCCCC--CCCCcceeeecCCCCCCC--CC---CCCCCCCCHHHHHHHHHHHHHhh
Q 020851           79 DRHLILERCSETSI------DILWQYGEPQ--SLTTSHQILRRKEAPPVL--KI---QSPSGEHSLAEREAAYLAARERI  145 (320)
Q Consensus        79 dR~VVV~Ktp~Tri------di~~~~de~~--~~~p~~kIMrR~~~~~d~--k~---~~~~~~kSlEEREeeY~rAReRI  145 (320)
                      ...+++.|+-+.+.      ++..+.+..+  .+..++.|--|+.....-  +.   .......|.|||+++|..||.||
T Consensus       171 eqR~l~~k~~~s~~P~~~~~~~P~ssp~~~~~~~~~~~~~sp~p~~g~G~~~~~p~~~~~~~~~S~~~~kq~yd~~r~r~  250 (432)
T KOG2953|consen  171 EQRILVTKTGESRFPGVSLSEIPVSSPSSNGWSEQRKGDISPRPTSGGGVSLSSPSNPQVTLLRSVEERKQEYDKARGRI  250 (432)
T ss_pred             hccccccccccccCCchhhccccccCccccccccccccccCCCCCCCCcccccCCcCCCccccccchhhhhhhhhhhccc
Confidence            44566777655444      4444322222  333355677777644322  22   23347789999999999999999


Q ss_pred             ccCCCCC-CCCccccccccc
Q 020851          146 FSMDART-VAEPVRQKPRSV  164 (320)
Q Consensus       146 F~~~~~~-~~e~~~~~~R~v  164 (320)
                      |+..... .+|+..+-++..
T Consensus       251 g~~~~~~~s~Dss~q~~p~~  270 (432)
T KOG2953|consen  251 GSKPVTNDSKDSSSQQPPQN  270 (432)
T ss_pred             cCccccccCcccccccCCcc
Confidence            9998874 566666666654

>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ

Probab=98.99  E-value=1.2e-09  Score=84.12  Aligned_cols=60  Identities=23%  Similarity=0.401  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhC-CeeeecccCCceEEEEec
Q 020851           24 HLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFG-FAHESVGEGVDRHLILER   86 (320)
Q Consensus        24 ~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfG-L~h~S~GeG~dR~VVV~K   86 (320)
                      ..|..|.+.+.+.+....   .++.|+|||+|+|.+||++++.|+ |.++|.|+|+.|+|||..
T Consensus         6 ~~L~~~A~~~a~~v~~tg---~~~~l~PM~~~eRrivH~~~~~~~~l~T~S~G~~~~R~vvI~~   66 (67)
T cd02644           6 ETLIRLAERAAEKVRRTG---KPVKLEPMNAYERRIIHDALANDEDVETESEGEGPYRRVVISP   66 (67)
T ss_pred             HHHHHHHHHHHHHHHHHC---CeeEeCCCCHHHHHHHHHHHHhCCCceEEeecCCCCeEEEEEe
Confidence            367788888888888876   359999999999999999999876 999999999999999974

SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain

Probab=98.73  E-value=4.2e-08  Score=74.42  Aligned_cols=40  Identities=33%  Similarity=0.474  Sum_probs=38.5

Q ss_pred             ceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEe
Q 020851           46 VLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILE   85 (320)
Q Consensus        46 slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~   85 (320)
                      .++|.|||+|.|.++|++++.|||.++|.|+|+.|+|+|.
T Consensus        20 ~veL~Pm~~~eRri~H~~v~~~~l~s~S~G~ep~RrvvI~   59 (60)
T cd02645          20 PVELLPRSAYIRRLQHDLVERYQLRSESFGSEPNRRLRIL   59 (60)
T ss_pred             eEEcCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcEEEEe
Confidence            4999999999999999999999999999999999999985

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA or ssRNA in a sequence-specific manner.

>cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function

Probab=98.51  E-value=2.5e-07  Score=70.91  Aligned_cols=57  Identities=32%  Similarity=0.420  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHH-HhCCeeeecccCCceEEEEe
Q 020851           28 SMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLAD-IFGFAHESVGEGVDRHLILE   85 (320)
Q Consensus        28 kLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAe-yfGL~h~S~GeG~dR~VVV~   85 (320)
                      .+.+++.-|++..... ..+.|+|||+|+|.+||...+ +-++.+.|.|+|+.|+|||.
T Consensus         3 ~~~~~~~~f~~~~~~~-r~v~LePM~~~ERkIIH~~Lq~~~~v~T~S~G~ep~RrVVI~   60 (62)
T cd02638           3 RVSEELEIFLLSFQRY-RVLLFPPLNSRRRYLIHQTVENRFLLSTFSVGEGWARRTVVC   60 (62)
T ss_pred             hhHHHHHHHHHhcccC-CeEecCCCChHHHHHHHHHHhcCCCceEEEccCCCCcEEEEe
Confidence            3567778899877532 469999999999999999775 45899999999999999985

The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain

Probab=98.21  E-value=6.5e-07  Score=68.05  Aligned_cols=56  Identities=25%  Similarity=0.407  Sum_probs=46.8

Q ss_pred             HHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851           29 MEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER   86 (320)
Q Consensus        29 LEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K   86 (320)
                      +-.++.-|..+...  ..+.||| .++.+|.+||.+|..+||.|.|.|.|..|.|+|+|
T Consensus         4 ~YsqlllFkdd~~~--~eL~Fp~~ls~~eRriih~la~~lGL~~~s~G~g~~R~v~v~k   60 (60)
T cd02639           4 IYSQLLLFKDDRMR--DELAFPSSLSPAERRIVHLLASRLGLNHVSDGTGERRQVQITK   60 (60)
T ss_pred             ceeeEEEEecCCCc--eEEEcCCCCCHHHHHHHHHHHHHcCCceEEeCCCceEEEeecC
Confidence            33445567777764  4599999 59999999999999999999999999999998875

Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.

>COG1847 Jag Predicted RNA-binding protein [General function prediction only]

Probab=97.84  E-value=4.6e-05  Score=70.61  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHh-CCeeeecccCCceEEEEec
Q 020851           25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF-GFAHESVGEGVDRHLILER   86 (320)
Q Consensus        25 fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyf-GL~h~S~GeG~dR~VVV~K   86 (320)
                      .|.+|.+.+-+-+....   .++.|+||+||+|.+||..-..+ |+.++|.|+|+.|+|||..
T Consensus       148 ~L~~LA~~~A~rV~~tg---~~v~L~pM~~~ERkIVH~~l~~~~~V~T~SeG~ep~R~vVV~~  207 (208)
T COG1847         148 TLIKLAERAAERVLETG---RSVELEPMPPFERKIVHTALSANPGVETYSEGEEPNRRVVVRP  207 (208)
T ss_pred             HHHHHHHHHHHHHHhhC---CeeecCCCCHHHHHHHHHHHHhcCCcceeecCCCCceEEEEec
Confidence            67777777777776655   46999999999999999987555 9999999999999999964

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=96.35  E-value=0.0037  Score=67.81  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=66.6

Q ss_pred             ccchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCC----CcceecCCCChHHHHHHHHHHHHhCCeeeecccCCce
Q 020851            5 QFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSA----DGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDR   80 (320)
Q Consensus         5 ~~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~----~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR   80 (320)
                      .+.+.++|.+..+.+++   |+..+|+++..|+......    ..+..||||+-..|.+||.+|+.|+|...+.+..+.|
T Consensus       804 ~~~~~e~~~e~~r~~~~---f~~sv~~e~~~lv~~~~~~~~~~~k~~~~p~ms~~~rr~vh~~~e~~~l~~~sa~~~pkr  880 (950)
T KOG1952|consen  804 LSKFSESLKEDARKDLK---FVKSVEKELEFLVELVKRGKNYSKKSHSFPPMSRDKRRLVHELAEVFGLESVSADSEPKR  880 (950)
T ss_pred             hhhhhHHHHHHHHhchh---hhccchhhhHHHHHHHhhcccccccccccCchhHHHHHHHHhhhhccCCcccccCCCccc
Confidence            45678888888887776   9999999998888764311    1357899999999999999999999999999877889


Q ss_pred             EEEEecc
Q 020851           81 HLILERC   87 (320)
Q Consensus        81 ~VVV~Kt   87 (320)
                      .+|++..
T Consensus       881 ~~v~t~i  887 (950)
T KOG1952|consen  881 NVVVTAI  887 (950)
T ss_pred             ceeeEee
Confidence            9999865

>cd02637 R3H_PARN R3H domain of Poly(A)-specific ribonuclease (PARN)

Probab=95.45  E-value=0.058  Score=41.70  Aligned_cols=56  Identities=27%  Similarity=0.481  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHh---CCeeeecc-cCCceEEEEecc
Q 020851           29 MEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF---GFAHESVG-EGVDRHLILERC   87 (320)
Q Consensus        29 LEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyf---GL~h~S~G-eG~dR~VVV~Kt   87 (320)
                      +.+.+.+|+++..   ..+.++|||+|+|.|++......   |+.-++.. +...+.|++.+.
T Consensus         4 v~~~i~~fl~s~~---~~l~le~cngf~RkLiyq~l~~~~~~~I~ve~~~~ekk~~~i~~~k~   63 (65)
T cd02637           4 VIERIEAFLESEE---DDLELEPCNGFQRKLIYQTLEQKYPKGIHVETLETEKKERLIVIEKG   63 (65)
T ss_pred             HHHHHHHHHhcCc---ccccccccccHHHHHHHHHHHHHccccceeeeeeccccceEEEEeec
Confidence            4567888999874   34999999999999999888664   34444433 555677777765

PARN is a poly(A)-specific 3' exonuclease from the RNase D family that, in Xenopus, deadenylates a specific class of maternal mRNAs which results in their translational repression. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
1whr_A	124	Solution Structure Of The R3h Domain From Human Hyp		3e-04

>pdb|1WHR|A Chain A, Solution Structure Of The R3h Domain From Human Hypothetical Protein Baa76846 Length = 124

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 10 EELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGF 69
          E L   +K N   + ++L +E+ ++ F+ D+N+     +   M SY+R+LLHR+A  FG 
Sbjct: 17 EFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ--FKKFPQMTSYHRMLLHRVAAYFGM 74
Query: 70 AH--ESVGEGVDRHLILERCSETSI 92
           H  +  G+ V    I+ + S T I
Sbjct: 75 DHNVDQTGKAV----IINKTSNTRI 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
1whr_A	124	Hypothetical KIAA1002 protein; R3H domain, structu	2e-11
1msz_A	86	DNA-binding protein smubp-2; R3H fold; NMR {Homo s	5e-09
2cpm_A	94	Sperm-associated antigen 7; R3H domain, structural	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1 Length = 124

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 7   AMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADI 66
            +V  L    +D +    ++L +E+ ++ F+ D+N+     +   M SY+R+LLHR+A  
Sbjct: 18  FLVNTLKKNPRDRM----MLLKLEQEILEFINDNNN--QFKKFPQMTSYHRMLLHRVAAY 71

Query: 67  FGFAHESVGEGVDRHLILERCSETSI------DILWQYGEPQSLTTSHQILRR 113
           FG  H     G  + +I+ + S T I      + +    E  +      IL  
Sbjct: 72  FGMDHNVDQTG--KAVIINKTSNTRIPEQRFSEHIKD--EKNTEFQQRFILSG 120

>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 29 MEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVG-EGVDRHLIL 84
          ME+ + +F+QD        + +PM+   R +LH + ++ G    S G +   R++++
Sbjct: 16 MEKEVSDFIQDSGQIK--KKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMI 70

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 41/289 (14%), Positives = 74/289 (25%), Gaps = 85/289 (29%)

Query: 15  LVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESV 74
             K N+      L + +AL             LEL P      +L+  +    G      
Sbjct: 126 FAKYNVSRLQPYLKLRQAL-------------LELRPAK---NVLIDGVL---GS----- 161

Query: 75  GEGVDRHLILERCSETSID------ILW----QYGEPQSL-----TTSHQILRRKEAPPV 119
           G+     + L+ C    +       I W        P+++        +QI     +   
Sbjct: 162 GKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 120 LKIQSPSGEHSLAEREAAYLAARE-----------------RIFSMDARTVAEPV--RQK 160
                    HS+       L ++                    F++  + +   +  R K
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFK 275

Query: 161 PRSVPIVAQRMIAHALGQKMKSGDQDTAVRDEITNEKLANEINIRESDKAGPNTSLEAYQ 220
                 V   + A             T   DE     L   ++ R  D   P    E   
Sbjct: 276 Q-----VTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL--PR---EVLT 324

Query: 221 ETTLLPG-------QNVNSLD---KSNKKKGKSTVSSQSDRIAPQETSE 259
                           + + D     N  K  + + S  + + P E  +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
1whr_A	124	Hypothetical KIAA1002 protein; R3H domain, structu	99.96
2cpm_A	94	Sperm-associated antigen 7; R3H domain, structural	99.14
1msz_A	86	DNA-binding protein smubp-2; R3H fold; NMR {Homo s	99.1
3gku_A	225	Probable RNA-binding protein; APC21302, clostridiu	97.93
1ug8_A	87	Poly(A)-specific ribonuclease; R3H domain, poly(A)	97.23

>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1

Probab=99.96  E-value=3.5e-30  Score=217.33  Aligned_cols=112  Identities=27%  Similarity=0.454  Sum_probs=95.4

Q ss_pred             CccccchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceE
Q 020851            2 STTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRH   81 (320)
Q Consensus         2 ~~t~~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~   81 (320)
                      |++|+++.+||+++|++||+||+|||+||++|++||+++.+  +.++|||||||+|||||+||+||||+|.++++|  ++
T Consensus         9 d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~--~~~ef~pmnSy~RllvHrvAe~ygL~h~~d~~~--r~   84 (124)
T 1whr_A            9 DSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNN--QFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG--KA   84 (124)
T ss_dssp             CCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSC--CEEECCCCCHHHHHHHHHHHHHHTCCEEECSSC--SS
T ss_pred             cCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCc--cceECCCCCHHHHHHHHHHHHHhCcCccccCCC--CE
Confidence            78999999999999999999999999999999999999975  459999999999999999999999999987654  99


Q ss_pred             EEEeccCCcce-eeecc---CCCCCCCCCcceeeecCCCC
Q 020851           82 LILERCSETSI-DILWQ---YGEPQSLTTSHQILRRKEAP  117 (320)
Q Consensus        82 VVV~Ktp~Tri-di~~~---~de~~~~~p~~kIMrR~~~~  117 (320)
                      |+|+||+.|+| .+.++   .++.....++.+|+||++++
T Consensus        85 VvV~Kt~~tr~P~~~lse~~~~~~~~~~~~~~vl~r~~~~  124 (124)
T 1whr_A           85 VIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILSGPSSG  124 (124)
T ss_dssp             EEEECCTTCCCCSCCGGGTSCSCSCCCCCCSSCCCCCCCC
T ss_pred             EEEEeCCCCCCChHHHHHHhcccccccchheeeEecCCCC
Confidence            99999999988 22222   12233335577899999763

>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=93.98  Aligned_cols=64  Identities=25%  Similarity=0.425  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCc-eEEEEeccCC
Q 020851           24 HLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVD-RHLILERCSE   89 (320)
Q Consensus        24 ~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~d-R~VVV~Ktp~   89 (320)
                      -|-.+.|+.|..|+++...  +++.|+|||+|+|.+||.+++.|||.++|+|+|+. |+|||.+...
T Consensus        11 ~yR~~re~~L~~la~~~g~--~~v~L~PM~~~eRriIH~~l~~~gl~S~S~Geep~~R~VvI~~~~~   75 (94)
T 2cpm_A           11 EFRKRMEKEVSDFIQDSGQ--IKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEF   75 (94)
T ss_dssp             HHHHHHHHHHHHHHHCSSC--CEEECCCCCSSHHHHHHHHHHHHTCEEEEECSSSSCCEEEEECSTT
T ss_pred             HHHHHHHHHHHHHHHhcCC--CceEeCCCCHHHHHHHHHHHHHCCCEEEEecCCCCceEEEEEeCCC
Confidence            3667889999999987763  34999999999999999999999999999999996 9999997643

>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}

Probab=97.93  E-value=8.2e-06  Score=74.86  Aligned_cols=60  Identities=22%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHh-CCeeeecccCCceEEEEecc
Q 020851           25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF-GFAHESVGEGVDRHLILERC   87 (320)
Q Consensus        25 fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyf-GL~h~S~GeG~dR~VVV~Kt   87 (320)
                      .|..|.+.+.+-|....   .++.|+|||+|+|.+||...+.+ |+.++|.|+|+.|+|||...
T Consensus       149 ~L~~lA~~~A~kV~~tg---~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGeep~R~VVI~~~  209 (225)
T 3gku_A          149 TLETLAKNIAYKVKRTK---RSVSLEPMNPYERRIIHAALQNDKYVVTRSDGEEPFRHVIISLK  209 (225)
T ss_dssp             HHHHHHHHHHHHHHHHC---SCEECCCCCHHHHHHHHHHTTTCSSEEEEEESSTTSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhC---CEEEccCCCHHHHHHHHHHHccCCCcEEEEeecCCCeEEEEEEc
Confidence            56666666666666655   35999999999999999987665 99999999999999999744

>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1

Probab=97.23  E-value=0.00079  Score=53.81  Aligned_cols=66  Identities=21%  Similarity=0.420  Sum_probs=48.6

Q ss_pred             cchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHH-h-CCeee-ecc-cCCceEEEEecc
Q 020851           20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADI-F-GFAHE-SVG-EGVDRHLILERC   87 (320)
Q Consensus        20 prDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAey-f-GL~h~-S~G-eG~dR~VVV~Kt   87 (320)
                      +.++.||-.+-..|.+|++++..  ..+.++|+|+|+|.||+..+.. | +..|. +.- +...+.|++.+.
T Consensus         7 ~e~k~~id~i~~kIe~FL~s~~~--~~l~l~pCN~f~RkLIYQ~~~~kfp~~i~vet~~~e~~~~~ivv~~~   76 (87)
T 1ug8_A            7 GDQKKFIDQVIEKIEDFLQSEEK--RSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKV   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSC--CEEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCSEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCC--CceecCCchHHHHHHHHHHHHHhcCCceEEEEEecCCceEEEEEEec
Confidence            45678999999999999999874  3599999999999999998744 4 33333 222 444556666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d1whra_	124	d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (	3e-13
d1msza_	62	d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId	2e-08

>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: R3H domain protein KIAA1002
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 2  STTQFAMVEELAFLV---KDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRL 58
          S T    ++   FLV   K N   + ++L +E+ ++ F+ D+N+     +   M SY+R+
Sbjct: 6  SGTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQ--FKKFPQMTSYHRM 63

Query: 59 LLHRLADIFGFAHESVGEGVDRHLILERCSETSI 92
          LLHR+A  FG  H     G  + +I+ + S T I
Sbjct: 64 LLHRVAAYFGMDHNVDQTG--KAVIINKTSNTRI 95

>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: SmuBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 30 EEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86
             +V F+         LE  P ++S++RL +H++A+  G  H+S GEG  R + + +
Sbjct: 6  RAMIVEFMASKKM---QLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSK 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1whra_	124	R3H domain protein KIAA1002 {Human (Homo sapiens)	99.96
d1msza_	62	SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1ug8a_	87	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	97.89

>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: R3H domain protein KIAA1002
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=208.55  Aligned_cols=111  Identities=27%  Similarity=0.461  Sum_probs=94.7

Q ss_pred             CccccchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceE
Q 020851            2 STTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRH   81 (320)
Q Consensus         2 ~~t~~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~   81 (320)
                      |+||+||.+||+++|++||+||+|||+||++|.+||+++..  ++++|||||+|+|++||+||+||||.|+++|.|  |+
T Consensus         9 d~~~~dl~~fl~~~l~~~~~dr~fil~lE~~l~~Fi~d~~~--~~~~fppM~s~~R~~vH~lAe~ygL~s~s~~~~--r~   84 (124)
T d1whra_           9 DSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNN--QFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG--KA   84 (124)
T ss_dssp             CCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSC--CEEECCCCCHHHHHHHHHHHHHHTCCEEECSSC--SS
T ss_pred             CCccccHHHHHHHHHHcChHhHHHHHHHHHHHHHHHhCCcc--ceeECCCCCHHHHHHHHHHHHHhCCcccccCCC--Ce
Confidence            78999999999999999999999999999999999999875  469999999999999999999999999997655  99


Q ss_pred             EEEeccCCcce-eeeccC---CCCCCCCCcceeeecCCC
Q 020851           82 LILERCSETSI-DILWQY---GEPQSLTTSHQILRRKEA  116 (320)
Q Consensus        82 VVV~Ktp~Tri-di~~~~---de~~~~~p~~kIMrR~~~  116 (320)
                      |+|.+|+.|+| .+....   .+.....+++.||.|+..
T Consensus        85 v~v~kt~~sriP~~~lse~i~~~~~~e~~~r~i~~rps~  123 (124)
T d1whra_          85 VIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILSGPSS  123 (124)
T ss_dssp             EEEECCTTCCCCSCCGGGTSCSCSCCCCCCSSCCCCCCC
T ss_pred             EEEEeCCCCCCCcHHHHHHhCcccccchhhhhhhcCCCC
Confidence            99999999888 222221   223334457889999865

>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: SmuBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=106.34  Aligned_cols=58  Identities=29%  Similarity=0.572  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851           27 LSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC   87 (320)
Q Consensus        27 LkLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt   87 (320)
                      -.++..|.+||+++..   .+.||| |++++|.+||++|++|||.|.|.|+|++|+|+|+|.
T Consensus         3 ~~~~~~i~~Fv~s~~~---~~~f~p~m~~~~R~~vH~lA~~~gl~s~S~G~~~~R~v~v~kk   61 (62)
T d1msza_           3 DHFRAMIVEFMASKKM---QLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKR   61 (62)
T ss_dssp             HHHHHHHHHHHHHTCS---EEEECTTCCSHHHHHHHHHHHHTTEEEEEECSSSCCEEEEEEC
T ss_pred             HHHHHHHHHHHhCCCC---EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCcEEEEEeC
Confidence            3578899999999873   599999 999999999999999999999999999999999986

>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: R3H domain
family: R3H domain
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=1.9e-05  Score=61.32  Aligned_cols=64  Identities=23%  Similarity=0.498  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHH-h--CCeeee-cccCCceEEEEecc
Q 020851           22 SKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADI-F--GFAHES-VGEGVDRHLILERC   87 (320)
Q Consensus        22 DR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAey-f--GL~h~S-~GeG~dR~VVV~Kt   87 (320)
                      ++.||-.+.+.|.+|+++...  ..++|+|+|.|+|.||+....+ |  |+.-++ ..+-..|+|+|.|.
T Consensus         9 ~k~fI~~v~erIe~fL~see~--k~l~lepCngFqRKLIYQtl~~kfp~kI~vet~~~Enk~r~Ivv~Kv   76 (87)
T d1ug8a_           9 QKKFIDQVIEKIEDFLQSEEK--RSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKV   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSC--CEEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHcCccc--ceeecCCCcHHHHHHHHHHHHHhCCCcceeeeeeecCCceEEEEEEc
Confidence            467999999999999999763  3599999999999999999866 4  555444 33556799999886