Citrus Sinensis ID: 020852

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMSKIPMGTGTLGDFPHSGRVWE

ccEEcccHHHHHHHHHHcccccccccHHHHHHHHccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccEEccccHHHHHccccccccccHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEEEEEEccHHHHccccccccccHHHHHHHHHHccccHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHEEEEccccEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHcccccccccEccccccHHHHHHHHHHHHcccccccccccccccccccccccc

mfcycrltympmsylygkrfvgpitpLILQLREEIytqpyneinwSKLRHYcakedvffphtpvqnllWDTLYYVVEpifnrwpfkklRDKSLKVAMKHINyedeasryitigcvekplnmlscwvedpnsdyfKKHLARITEYFwvgedglrvqsfgsQTWDCALAVQALLACNLTDEIGPILMKAHDFlknsqvtdnpqgdfrSMFRhiskggwtfsnkdhgwpvsdcssesflcclhlstmtpeivgekmeperfydaANFMLSIQVRKQRYRAIDNLIIFKACIfndigwknlgmskipmgtgtlgdfphsgrvwe

MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHinyedeasryITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMSKIpmgtgtlgdfphsgrvwe

*FCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT****GDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMSKIPMGTGTL***********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		320	2.2.26 [Sep-21-2011]
Q8W3Z1		779	Beta-amyrin synthase OS=B	N/A	no	0.846	0.347	0.698	1e-118
Q2XPU7		769	Lupeol synthase OS=Ricinu	N/A	no	0.865	0.360	0.682	1e-118
E2IUA6		779	Taraxerol synthase OS=Kal	N/A	no	0.846	0.347	0.680	1e-117
O82140		763	Beta-Amyrin Synthase 1 OS	N/A	no	0.846	0.355	0.686	1e-116
Q9MB42		765	Beta-amyrin synthase OS=G	N/A	no	0.85	0.355	0.688	1e-116
E7DN63		761	Beta-amyrin synthase OS=S	N/A	no	0.846	0.356	0.678	1e-115
Q9LRH7		764	Mixed-amyrin synthase OS=	N/A	no	0.85	0.356	0.681	1e-115
A8CDT2		759	Beta-amyrin synthase OS=B	N/A	no	0.846	0.357	0.676	1e-113
O82146		761	Beta-Amyrin Synthase 2 OS	N/A	no	0.846	0.356	0.671	1e-113
A8CDT3		761	Lupeol synthase OS=Brugui	N/A	no	0.846	0.356	0.671	1e-113

>sp\|Q8W3Z1\|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1	Back alignment and function desciption

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 190/272 (69%), Positives = 226/272 (83%), Gaps = 1/272 (0%)

Query: 1   MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
           M+CYCR+ YMPMSYLYGKRFVGPITPLILQLREE+YTQPY+++NW K+RH CAKED+++P
Sbjct: 256 MWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYTQPYHQVNWKKVRHLCAKEDIYYP 315

Query: 61  HTPVQNLLWDTLYYVVEPIFNRWPFKKL-RDKSLKVAMKHINYEDEASRYITIGCVEKPL 119
           H  +Q+LLWD+LY   EP+  RWPF KL R+K+L+V MKHI+YEDE SRYITIGCVEK L
Sbjct: 316 HPLIQDLLWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDENSRYITIGCVEKVL 375

Query: 120 NMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDE 179
            ML+CWVEDPN DYFKKH+ARI +Y WV EDG+++QSFGSQ WD   A+QALLA NLTDE
Sbjct: 376 CMLACWVEDPNGDYFKKHIARIPDYIWVAEDGIKMQSFGSQEWDTGFAIQALLASNLTDE 435

Query: 180 IGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239
           IGP L + HDF+K SQV DNP GDF SM RHISKG WTFS++DHGW VSDC++E   CCL
Sbjct: 436 IGPTLARGHDFIKKSQVKDNPSGDFESMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCL 495

Query: 240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQVR 271
             S M PEIVGEKMEPE+ YD+ N +LS+Q +
Sbjct: 496 LFSIMPPEIVGEKMEPEQLYDSVNVLLSLQSK 527

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Betula platyphylla (taxid: 78630)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9

>sp\|Q2XPU7\|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|E2IUA6\|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

>sp\|O82140\|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1	Back alignment and function description

>sp\|Q9MB42\|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1	Back alignment and function description

>sp\|E7DN63\|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRH7\|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1	Back alignment and function description

>sp\|A8CDT2\|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1	Back alignment and function description

>sp\|O82146\|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1	Back alignment and function description

>sp\|A8CDT3\|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		320
297735695		885	unnamed protein product [Vitis vinifera]	0.843	0.305	0.697	1e-118
359483263		773	PREDICTED: beta-amyrin synthase-like [Vi	0.846	0.350	0.697	1e-118
300431227		763	beta-amyrin synthase [Aralia elata]	0.846	0.355	0.701	1e-117
75248718		779	RecName: Full=Beta-amyrin synthase gi\|18	0.846	0.347	0.698	1e-117
297735720		846	unnamed protein product [Vitis vinifera]	0.846	0.320	0.693	1e-117
225443446		757	PREDICTED: beta-amyrin synthase [Vitis v	0.846	0.357	0.693	1e-116
224105317		707	predicted protein [Populus trichocarpa]	0.846	0.383	0.675	1e-116
147839872		729	hypothetical protein VITISV_001242 [Viti	0.846	0.371	0.693	1e-116
255572809		741	Cycloartenol synthase, putative [Ricinus	0.865	0.373	0.682	1e-116
122210891		769	RecName: Full=Lupeol synthase gi\|8246880	0.865	0.360	0.682	1e-116

>gi\|297735695\|emb\|CBI18382.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 189/271 (69%), Positives = 227/271 (83%)

Query: 1   MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
           M+CYCRL YMPMSYLYGKRFVGPITPL+L+LR+E++ QPYNEINW K+RH CAKED+++P
Sbjct: 372 MWCYCRLVYMPMSYLYGKRFVGPITPLVLELRKELFLQPYNEINWKKVRHLCAKEDLYYP 431

Query: 61  HTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120
           H  +Q+L+WD+LY   EP+  RWPF KLR K+L+V MKHI+YEDE SRYITIGCVEK L 
Sbjct: 432 HPLIQDLMWDSLYICTEPLLTRWPFNKLRQKALEVTMKHIHYEDENSRYITIGCVEKVLC 491

Query: 121 MLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEI 180
           MLSCWVEDP+ DYFKKHLARI +Y WVGEDG+++QSFGSQ WD   A+QALLACN+TDEI
Sbjct: 492 MLSCWVEDPDGDYFKKHLARIPDYIWVGEDGIKMQSFGSQEWDTGFALQALLACNMTDEI 551

Query: 181 GPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLH 240
           GP L K H+F+K SQV DNP GDF+SM+RHISKG WTFS++DHGW VSDC++E   CCL 
Sbjct: 552 GPTLKKGHEFVKESQVKDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLL 611

Query: 241 LSTMTPEIVGEKMEPERFYDAANFMLSIQVR 271
            S M PEIVG KMEPER +D+ N +LS+Q +
Sbjct: 612 FSMMAPEIVGTKMEPERLFDSVNILLSLQSK 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359483263\|ref\|XP_002269328.2\| PREDICTED: beta-amyrin synthase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|300431227\|gb\|ADK12003.1\| beta-amyrin synthase [Aralia elata]	Back alignment and taxonomy information

>gi\|75248718\|sp\|Q8W3Z1.1\|BAMS_BETPL RecName: Full=Beta-amyrin synthase gi\|18147596\|dbj\|BAB83088.1\| beta-amyrin synthase [Betula platyphylla]	Back alignment and taxonomy information

>gi\|297735720\|emb\|CBI18407.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225443446\|ref\|XP_002270934.1\| PREDICTED: beta-amyrin synthase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224105317\|ref\|XP_002333832.1\| predicted protein [Populus trichocarpa] gi\|222838872\|gb\|EEE77223.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147839872\|emb\|CAN65909.1\| hypothetical protein VITISV_001242 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255572809\|ref\|XP_002527337.1\| Cycloartenol synthase, putative [Ricinus communis] gi\|223533337\|gb\|EEF35089.1\| Cycloartenol synthase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|122210891\|sp\|Q2XPU7.1\|LUPS_RICCO RecName: Full=Lupeol synthase gi\|82468803\|gb\|ABB76766.1\| lupeol synthase [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		320
UNIPROTKB\|Q8W3Z1		779	OSCBPY "Beta-amyrin synthase"	0.840	0.345	0.703	5.9e-112
UNIPROTKB\|Q2XPU7		769	Q2XPU7 "Lupeol synthase" [Rici	0.865	0.360	0.682	1.1e-110
UNIPROTKB\|E2IUA6		779	E2IUA6 "Taraxerol synthase" [K	0.840	0.345	0.685	4.8e-110
UNIPROTKB\|Q9LRH7		764	OSCPSM "Mixed-amyrin synthase"	0.85	0.356	0.681	4.3e-109
UNIPROTKB\|A8CDT2		759	BAS "Beta-amyrin synthase" [Br	0.840	0.354	0.681	1e-107
UNIPROTKB\|A8CDT3		761	LUS "Lupeol synthase" [Bruguie	0.840	0.353	0.676	1.5e-106
UNIPROTKB\|E2IUA8		767	E2IUA8 "Friedelin synthase" [K	0.840	0.350	0.659	2.9e-103
UNIPROTKB\|E2IUA9		765	E2IUA9 "Lupeol synthase" [Kala	0.840	0.351	0.648	6e-103
TAIR\|locus:2207315		759	BAS "beta-amyrin synthase" [Ar	0.840	0.354	0.640	4.2e-102
UNIPROTKB\|B9X0J1		761	B9X0J1 "Baccharis oxide syntha	0.846	0.356	0.649	8.8e-102

UNIPROTKB\|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]	Back alignment and assigned GO terms

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 190/270 (70%), Positives = 225/270 (83%)

Query:     1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
             M+CYCR+ YMPMSYLYGKRFVGPITPLILQLREE+YTQPY+++NW K+RH CAKED+++P
Sbjct:   256 MWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYTQPYHQVNWKKVRHLCAKEDIYYP 315

Query:    61 HTPVQNLLWDTLYYVVEPIFNRWPFKKL-RDKSLKVAMKHINYEDEASRYITIGCVEKPL 119
             H  +Q+LLWD+LY   EP+  RWPF KL R+K+L+V MKHI+YEDE SRYITIGCVEK L
Sbjct:   316 HPLIQDLLWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIHYEDENSRYITIGCVEKVL 375

Query:   120 NMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDE 179
              ML+CWVEDPN DYFKKH+ARI +Y WV EDG+++QSFGSQ WD   A+QALLA NLTDE
Sbjct:   376 CMLACWVEDPNGDYFKKHIARIPDYIWVAEDGIKMQSFGSQEWDTGFAIQALLASNLTDE 435

Query:   180 IGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239
             IGP L + HDF+K SQV DNP GDF SM RHISKG WTFS++DHGW VSDC++E   CCL
Sbjct:   436 IGPTLARGHDFIKKSQVKDNPSGDFESMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCL 495

Query:   240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQ 269
               S M PEIVGEKMEPE+ YD+ N +LS+Q
Sbjct:   496 LFSIMPPEIVGEKMEPEQLYDSVNVLLSLQ 525

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB\|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

TAIR\|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B9X0J1 B9X0J1 "Baccharis oxide synthase" [Stevia rebaudiana (taxid:55670)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.4.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		320
PLN02993		763	PLN02993, PLN02993, lupeol synthase	1e-150
PLN03012		759	PLN03012, PLN03012, Camelliol C synthase	1e-145
cd02892		634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	1e-107
TIGR01787		621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	1e-76
TIGR03463		634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	2e-63
cd02889		348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	2e-39
COG1657		517	COG1657, SqhC, Squalene cyclase [Lipid metabolism]	7e-08
cd00688		300	cd00688, ISOPREN_C2_like, This group contains clas	2e-06
TIGR01507		635	TIGR01507, hopene_cyclase, squalene-hopene cyclase	1e-04

>gnl\|CDD\|215537 PLN02993, PLN02993, lupeol synthase	Back alignment and domain information

 Score =  440 bits (1134), Expect = e-150
 Identities = 168/269 (62%), Positives = 217/269 (80%), Gaps = 1/269 (0%)

Query: 2   FCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPH 61
            CY R+ YMPMSYLYGKRFVGPITPLI+ LREE++ QPY EINW+K R  CAKED+++PH
Sbjct: 258 LCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPH 317

Query: 62  TPVQNLLWDTLYYVVEPIFNRWPFKKL-RDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120
             VQ+L+WDTL+  VEP   RWP  KL R+K+L+VAMKHI+YEDE S YITIGCVEK L 
Sbjct: 318 PLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLC 377

Query: 121 MLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEI 180
           ML+CW+E+PN D+FKKHLARI +Y WV EDG+++QSFGSQ WD   A+QALLA +L+DE 
Sbjct: 378 MLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSFGSQLWDTGFAIQALLASDLSDET 437

Query: 181 GPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLH 240
             +L + H+++K SQV +NP GDF+SM+RHISKG WT S++DHGW VSDC++E+  CC+ 
Sbjct: 438 DDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCML 497

Query: 241 LSTMTPEIVGEKMEPERFYDAANFMLSIQ 269
           LS M  ++VG+K++PE+ YD+ N +LS+Q
Sbjct: 498 LSMMPADVVGQKIDPEQLYDSVNLLLSLQ 526

Length = 763

>gnl\|CDD\|166653 PLN03012, PLN03012, Camelliol C synthase	Back alignment and domain information

>gnl\|CDD\|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>gnl\|CDD\|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases	Back alignment and domain information

>gnl\|CDD\|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	Back alignment and domain information

>gnl\|CDD\|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>gnl\|CDD\|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	Back alignment and domain information

>gnl\|CDD\|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		320
PLN02993		763	lupeol synthase	100.0
PLN03012		759	Camelliol C synthase	100.0
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	100.0
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	100.0
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	100.0
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	100.0
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	100.0
PLN02993		763	lupeol synthase	99.95
PLN03012		759	Camelliol C synthase	99.95
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.95
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	99.92
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.92
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.92
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.9
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	99.84
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.81
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.8
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.63
PF13249		113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.55
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	99.3
cd00688		300	ISOPREN_C2_like This group contains class II terpe	99.3
cd00688		300	ISOPREN_C2_like This group contains class II terpe	99.29
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.12
cd02896		297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.05
cd02896		297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.01
cd02890		286	PTase Protein prenyltransferase (PTase) domain, be	98.97
PF13243		109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	98.93
PF13249		113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	98.9
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	98.87
cd02891		282	A2M_like Proteins similar to alpha2-macroglobulin	98.83
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	98.8
cd02890		286	PTase Protein prenyltransferase (PTase) domain, be	98.79
cd02894		287	GGTase-II Geranylgeranyltransferase type II (GGTas	98.59
cd02895		307	GGTase-I Geranylgeranyltransferase types I (GGTase	98.43
cd02893		299	FTase Protein farnesyltransferase (FTase)_like pro	98.4
cd02894		287	GGTase-II Geranylgeranyltransferase type II (GGTas	98.38
cd02891		282	A2M_like Proteins similar to alpha2-macroglobulin	98.33
PLN03201		316	RAB geranylgeranyl transferase beta-subunit; Provi	98.3
PLN03201		316	RAB geranylgeranyl transferase beta-subunit; Provi	98.19
PF07678		246	A2M_comp: A-macroglobulin complement component; In	98.17
cd02893		299	FTase Protein farnesyltransferase (FTase)_like pro	98.1
PF07678		246	A2M_comp: A-macroglobulin complement component; In	98.01
cd02895		307	GGTase-I Geranylgeranyltransferase types I (GGTase	97.92
PLN02710		439	farnesyltranstransferase subunit beta	97.92
PLN02710		439	farnesyltranstransferase subunit beta	97.91
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	97.83
PF09492		289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	97.15
KOG0367		347	consensus Protein geranylgeranyltransferase Type I	97.07
COG1689		274	Uncharacterized protein conserved in archaea [Func	97.05
COG5029		342	CAL1 Prenyltransferase, beta subunit [Posttranslat	96.91
KOG0366		329	consensus Protein geranylgeranyltransferase type I	96.5
KOG0365		423	consensus Beta subunit of farnesyltransferase [Pos	96.38
KOG0365		423	consensus Beta subunit of farnesyltransferase [Pos	96.21
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432		44	Prenyltrans: Prenyltransferase and squalene oxidas	96.2
PF09492		289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	96.15
COG5029		342	CAL1 Prenyltransferase, beta subunit [Posttranslat	95.88
PLN02592		800	ent-copalyl diphosphate synthase	95.57
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432		44	Prenyltrans: Prenyltransferase and squalene oxidas	94.56
KOG0366		329	consensus Protein geranylgeranyltransferase type I	94.25
PF01122		326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	92.3
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	92.22
KOG1366		1436	consensus Alpha-macroglobulin [Posttranslational m	92.13
PF01122		326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	91.81
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	90.2
PLN02279		784	ent-kaur-16-ene synthase	89.84
cd00249		384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	88.21
COG1689		274	Uncharacterized protein conserved in archaea [Func	83.16
KOG1366		1436	consensus Alpha-macroglobulin [Posttranslational m	80.41
PF07470		336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	80.22

>PLN02993 lupeol synthase	Back alignment and domain information

Probab=100.00  E-value=3.3e-80  Score=638.52  Aligned_cols=310  Identities=55%  Similarity=1.032  Sum_probs=291.9

Q ss_pred             CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852            1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF   80 (320)
Q Consensus         1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~   80 (320)
                      ||||||+|||||+|||+|||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++++++++++.+.+++++++
T Consensus       257 ~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l  336 (763)
T PLN02993        257 TLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFL  336 (763)
T ss_pred             hHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCCchHHHHHHHHHHHHHHhhcc
Confidence            69999999999999999999999999999999999999999999999999999999999999988899999999999998


Q ss_pred             cCCCch-HHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCC
Q 020852           81 NRWPFK-KLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGS  159 (320)
Q Consensus        81 ~~~~~~-~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s  159 (320)
                      +++|++ ++|++|+++++++|+.||++|+|++|+|||++|+||++++++|+||.+++|+++|++|+|+.+|||+||+|+|
T Consensus       337 ~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ri~d~lw~~edgm~~q~~gS  416 (763)
T PLN02993        337 TRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSFGS  416 (763)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCCCC
Confidence            888766 6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHH
Q 020852          160 QTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL  239 (320)
Q Consensus       160 ~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~  239 (320)
                      |||||||++|||+++|++++++++|+||++||+++|++++++|||.+++|+.+||||+||+.|++|||+||||+||+|++
T Consensus       417 qvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l  496 (763)
T PLN02993        417 QLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCM  496 (763)
T ss_pred             chHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHH
Confidence            99999999999999999877799999999999999999888999999999999999999999999999999999999988


Q ss_pred             HhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccccccc--CCCCCCc-------hhhhcc
Q 020852          240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL--GMSKIPM-------GTGTLG  310 (320)
Q Consensus       240 ~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~--~~~~~p~-------~~~~l~  310 (320)
                      ++...+.+.+|.++..+++++||+|||+|||+||||++||++|  ...+|+.+||+|+  +++++|-       .|-||+
T Consensus       497 ~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~--~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~  574 (763)
T PLN02993        497 LLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVR--AYKWLELLNPTDFFANTMVEREYVECTSAVIQALV  574 (763)
T ss_pred             HHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCC--chhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence            8876665456677888999999999999999999999999999  8999999999999  8888872       245665


Q ss_pred             cc
Q 020852          311 DF  312 (320)
Q Consensus       311 ~~  312 (320)
                      .|
T Consensus       575 ~~  576 (763)
T PLN02993        575 LF  576 (763)
T ss_pred             Hh
Confidence            55

>PLN03012 Camelliol C synthase	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>PLN02993 lupeol synthase	Back alignment and domain information

>PLN03012 Camelliol C synthase	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	Back alignment and domain information

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement	Back alignment and domain information

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement	Back alignment and domain information

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A	Back alignment and domain information

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional	Back alignment and domain information

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional	Back alignment and domain information

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family	Back alignment and domain information

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family	Back alignment and domain information

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)	Back alignment and domain information

>PLN02710 farnesyltranstransferase subunit beta	Back alignment and domain information

>PLN02710 farnesyltranstransferase subunit beta	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4	Back alignment and domain information

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family	Back alignment and domain information

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4	Back alignment and domain information

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02592 ent-copalyl diphosphate synthase	Back alignment and domain information

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family	Back alignment and domain information

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>PLN02279 ent-kaur-16-ene synthase	Back alignment and domain information

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	Back alignment and domain information

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		320
1w6k_A		732	Structure Of Human Osc In Complex With Lanosterol L		9e-46
1w6j_A		732	Structure Of Human Osc In Complex With Ro 48-8071 L		9e-46

>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732

Back alignment and structure

Iteration: 1

Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 97/273 (35%), Positives = 160/273 (58%), Gaps = 11/273 (4%) Query: 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60 ++C+CR Y+PMSY Y R PL+ LR+E+Y + + I+W R+ A ++++ P Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288 Query: 61 HTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120 H+ + ++ Y + ++ LR ++++ +HI +D ++ I+IG + K +N Sbjct: 289 HSWLLRVV-----YALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343 Query: 121 MLSCW-VEDPNSDYFKKHLARITEYFWVGEDGLRVQ-SFGSQTWDCALAVQALLAC--NL 176 ML W V+ P S F++H++RI +Y W+G DG+++Q + GSQ WD A A+QALL + Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403 Query: 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236 E L KAH+FL+ SQV DNP D++ +R + KGG++FS D GW VSDC++E+ Sbjct: 404 RPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 Query: 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ 269 L L P + E + ER DA +L+++ Sbjct: 463 AVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMR 494

PyMOL of 1w6k

>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		320
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	2e-77
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	3e-47
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732	Back alignment and structure

 Score =  250 bits (638), Expect = 2e-77
 Identities = 97/275 (35%), Positives = 159/275 (57%), Gaps = 11/275 (4%)

Query: 1   MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
           ++C+CR  Y+PMSY Y  R      PL+  LR+E+Y + +  I+W   R+  A ++++ P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288

Query: 61  HTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120
           H+ +  +++  L       +       LR ++++   +HI  +D  ++ I+IG + K +N
Sbjct: 289 HSWLLRVVYALLNL-----YEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343

Query: 121 MLSCW-VEDPNSDYFKKHLARITEYFWVGEDGLRVQ-SFGSQTWDCALAVQALLAC--NL 176
           ML  W V+ P S  F++H++RI +Y W+G DG+++Q + GSQ WD A A+QALL    + 
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403

Query: 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236
             E    L KAH+FL+ SQV DNP  D++  +R + KGG++FS  D GW VSDC++E+  
Sbjct: 404 RPEFSSCLQKAHEFLRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462

Query: 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVR 271
             L L    P +  E +  ER  DA   +L+++  
Sbjct: 463 AVLLLQEKCPHV-TEHIPRERLCDAVAVLLNMRNP 496

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		320
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	100.0
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	100.0
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.88
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	99.85
1gxm_A		332	Pectate lyase; mechanism, elimination; 1.32A {Cell	99.51
1r76_A		408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.49
2h6f_B		437	Protein farnesyltransferase beta subunit; ftase, f	99.4
2h6f_B		437	Protein farnesyltransferase beta subunit; ftase, f	99.38
3dss_B		331	Geranylgeranyl transferase type-2 subunit beta; pr	99.3
1qqf_A		277	Protein (complement C3DG); alpha-alpha barrel, imm	99.22
2wy7_A		310	Complement C3D fragment; immune system, immune res	99.21
1hzf_A		367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.2
1n4q_B		377	Geranyltransferase type-I beta subunit; protein ge	99.16
3dss_B		331	Geranylgeranyl transferase type-2 subunit beta; pr	99.11
4acq_A		1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.83
3q7a_B		520	Farnesyltransferase beta subunit; protein prenyltr	98.82
1hzf_A		367	Complement factor C4A; alpha-alpha 6 barrel, immun	98.72
1r76_A		408	Pectate lyase; A-helical structure; 2.65A {Azospir	98.72
1qqf_A		277	Protein (complement C3DG); alpha-alpha barrel, imm	98.71
2wy7_A		310	Complement C3D fragment; immune system, immune res	98.69
1n4q_B		377	Geranyltransferase type-I beta subunit; protein ge	98.66
3q7a_B		520	Farnesyltransferase beta subunit; protein prenyltr	98.65
2pn5_A		1325	TEP1R, thioester-containing protein I; FULL-length	98.6
2hr0_B		915	Complement C3 alpha' chain; complement component C	98.58
1gxm_A		332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.48
2bb6_A		414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.07
2pn5_A		1325	TEP1R, thioester-containing protein I; FULL-length	98.07
4acq_A		1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.06
2bb6_A		414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.0
2hr0_B		915	Complement C3 alpha' chain; complement component C	97.94
4fxk_B		767	Complement C4-A alpha chain; immune system, proteo	97.72
3prx_B		1642	Cobra venom factor; immune system, complement, imm	96.97
2pmv_A		399	Gastric intrinsic factor; cobalamin transport prot	96.92
2b39_A		1661	C3; thioester, immune defense, immune system; HET:	96.88
3cu7_A		1676	Complement C5; Mg domain, inflammation, anaphylato	96.8
2b39_A		1661	C3; thioester, immune defense, immune system; HET:	96.8
3dra_B		390	Geranylgeranyltransferase type I beta subunit; ger	96.8
2pmv_A		399	Gastric intrinsic factor; cobalamin transport prot	96.8
3cu7_A		1676	Complement C5; Mg domain, inflammation, anaphylato	96.35
3prx_B		1642	Cobra venom factor; immune system, complement, imm	96.07
3dra_B		390	Geranylgeranyltransferase type I beta subunit; ger	95.71
4fxk_B		767	Complement C4-A alpha chain; immune system, proteo	95.47
3pya_A		727	ENT-copalyl diphosphate synthase, chloroplastic; c	95.43
3s9v_A		785	Abietadiene synthase, chloroplastic; alpha bundle/	95.36
3sdr_A		817	Alpha-bisabolene synthase; lyase, terpene synthase	95.08
3p5p_A		764	Taxadiene synthase; class I and II terpene cyclase	94.95
2ahf_A		377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	91.08
3k11_A		445	Putative glycosyl hydrolase; structural genomics,	85.6
3k11_A		445	Putative glycosyl hydrolase; structural genomics,	85.58
3pmm_A		382	Putative cytoplasmic protein; structural genomics,	84.55
3s9v_A		785	Abietadiene synthase, chloroplastic; alpha bundle/	84.31
3gt5_A		402	N-acetylglucosamine 2-epimerase; structural genomi	81.36
1nc5_A		373	Hypothetical protein YTER; structural genomics, he	80.8

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

Probab=100.00  E-value=5.6e-60  Score=493.03  Aligned_cols=287  Identities=34%  Similarity=0.667  Sum_probs=261.3

Q ss_pred             CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852            1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF   80 (320)
Q Consensus         1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~   80 (320)
                      ||||||+|||||+||+++||++|.+|++.+||+|||++||++|+|.++|+.|+++|+|+|+++++..++..+ +.+|+++
T Consensus       229 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~  307 (732)
T 1w6k_A          229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH  307 (732)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC
T ss_pred             HHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC
Confidence            799999999999999999999998899899999999999999999999999999999999999988888777 6777765


Q ss_pred             cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccC-CCcHHHHHHHHHHhhhhhhcCCCceeccC-C
Q 020852           81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVED-PNSDYFKKHLARITEYFWVGEDGLRVQSF-G  158 (320)
Q Consensus        81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~-pd~~~v~~~l~~l~~~l~~~~dG~~~q~~-~  158 (320)
                          ++++|++|++++++||..+|++++|+||+|+|++++||+++..+ |+||.+++|+++|++|+|+.+||+++|+| +
T Consensus       308 ----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~g  383 (732)
T 1w6k_A          308 ----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNG  383 (732)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSC
T ss_pred             ----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCC
Confidence                37899999999999999999999999999999999999988644 99999999999999999999999999999 7


Q ss_pred             ChhhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852          159 SQTWDCALAVQALLACNLTD--EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL  236 (320)
Q Consensus       159 s~vWdTa~a~~AL~~aG~~~--~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~  236 (320)
                      |++|||+|+++||.++|++.  ++++.++||++||+++|+.++ +|||...+|+.++|||+|++.+++|||+||||+||+
T Consensus       384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~  462 (732)
T 1w6k_A          384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK  462 (732)
T ss_dssp             CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence            99999999999999999865  467899999999999999764 578988999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccccc
Q 020852          237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKN  296 (320)
Q Consensus       237 AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~  296 (320)
                      ||..+...+.+ .|..+..+++++|++||+++||+||||++|+.++  ..-+++++|+.+
T Consensus       463 aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~--~~~~l~~i~~~e  519 (732)
T 1w6k_A          463 AVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKR--GGHLLELLNPSE  519 (732)
T ss_dssp             HHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCC--SCGGGGGGCCCS
T ss_pred             HHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCC--chHHHhhCcchh
Confidence            99987642210 2345678999999999999999999999999988  788899999665

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*	Back alignment and structure

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*	Back alignment and structure

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*	Back alignment and structure

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1	Back alignment and structure

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...	Back alignment and structure

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...	Back alignment and structure

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*	Back alignment and structure

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A	Back alignment and structure

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A	Back alignment and structure

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4	Back alignment and structure

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*	Back alignment and structure

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*	Back alignment and structure

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}	Back alignment and structure

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*	Back alignment and structure

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4	Back alignment and structure

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1	Back alignment and structure

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A	Back alignment and structure

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A	Back alignment and structure

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*	Back alignment and structure

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*	Back alignment and structure

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}	Back alignment and structure

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...	Back alignment and structure

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*	Back alignment and structure

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*	Back alignment and structure

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}	Back alignment and structure

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}	Back alignment and structure

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*	Back alignment and structure

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...	Back alignment and structure

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*	Back alignment and structure

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*	Back alignment and structure

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*	Back alignment and structure

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}	Back alignment and structure

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A	Back alignment and structure

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}	Back alignment and structure

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}	Back alignment and structure

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*	Back alignment and structure

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A	Back alignment and structure

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*	Back alignment and structure

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}	Back alignment and structure

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*	Back alignment and structure

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*	Back alignment and structure

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}	Back alignment and structure

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*	Back alignment and structure

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*	Back alignment and structure

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A	Back alignment and structure

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A	Back alignment and structure

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}	Back alignment and structure

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}	Back alignment and structure

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		320
d1w6ka2		279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	6e-62
d1w6ka1		448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	2e-53
d2sqca1		352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	4e-35
d2sqca2		271	a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic	5e-19

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  196 bits (499), Expect = 6e-62
 Identities = 48/155 (30%), Positives = 91/155 (58%), Gaps = 6/155 (3%)

Query: 1   MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
           ++C+CR  Y+PMSY Y  R      PL+  LR+E+Y + +  I+W   R+  A ++++ P
Sbjct: 130 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 189

Query: 61  HTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120
           H+ +  +++  L      ++       LR ++++   +HI  +D  ++ I+IG + K +N
Sbjct: 190 HSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 244

Query: 121 MLSCW-VEDPNSDYFKKHLARITEYFWVGEDGLRV 154
           ML  W V+ P S  F++H++RI +Y W+G DG+++
Sbjct: 245 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKM 279

PyMOL of d1w6ka2

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		320
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	100.0
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	100.0
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	100.0
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.95
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.95
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.76
d1gxma_		324	Polygalacturonic acid lyase (pectate lyase) {Cellv	99.41
d1r76a_		408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.92
d3dssb1		325	Rab geranylgeranyltransferase, beta subunit {Rat (	98.8
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	98.7
d3dssb1		325	Rab geranylgeranyltransferase, beta subunit {Rat (	98.62
d2h6fb1		401	Protein farnesyltransferase, beta-subunit {Human (	98.42
d2h6fb1		401	Protein farnesyltransferase, beta-subunit {Human (	98.41
d1r76a_		408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.31
d1hzfa_		326	C4adg fragment of complement factor C4a {Human (Ho	98.27
d1c3da_		294	C3D, a C3 fragment and ligand for complement recep	97.81
d1gxma_		324	Polygalacturonic acid lyase (pectate lyase) {Cellv	97.77
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	97.75
d1n4qb_		346	Protein farnesyltransferase, beta-subunit {Rat (Ra	97.41
d1n4qb_		346	Protein farnesyltransferase, beta-subunit {Rat (Ra	97.24
d1hzfa_		326	C4adg fragment of complement factor C4a {Human (Ho	95.42
d1ulva1		413	Glucodextranase, domain A {Arthrobacter globiformi	94.31
d1lf6a1		397	Bacterial glucoamylase, C-terminal domain {Thermoa	93.73
d1c3da_		294	C3D, a C3 fragment and ligand for complement recep	93.25
d1lf6a1		397	Bacterial glucoamylase, C-terminal domain {Thermoa	85.05

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-41  Score=328.98  Aligned_cols=202  Identities=29%  Similarity=0.452  Sum_probs=173.5

Q ss_pred             HHHHhhcCCCCccccccchHHhhcccccccCCC-cHHHHHHHHHHhhhhhh-cCCCcee----ccC-CChhhHHHHHHHH
Q 020852           98 KHINYEDEASRYITIGCVEKPLNMLSCWVEDPN-SDYFKKHLARITEYFWV-GEDGLRV----QSF-GSQTWDCALAVQA  170 (320)
Q Consensus        98 ~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd-~~~v~~~l~~l~~~l~~-~~dG~~~----q~~-~s~vWdTa~a~~A  170 (320)
                      .+|++|+..+.+.+++|++.+|++|+++.++|. +..+++++++|.+|++. .+||+|+    |++ +||||||+|+++|
T Consensus        32 ~~~~~e~~g~~~~~~~~~~~~L~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~A  111 (448)
T d1w6ka1          32 TYLQDERAGREQTGLEAYALGLDTKNYFKDLPKAHTAFEGALNGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQA  111 (448)
T ss_dssp             EECCC--CCCCCCHHHHHHHTCCCTTTSCCCCCCCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHH
T ss_pred             hhhhhhcCCCcccchHHHHHHHHHhCcCccCchhhhHHHHHHhhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHH
Confidence            345667777778899999999999999887765 45899999999999987 5899887    456 7999999999999


Q ss_pred             HHHcCCC--CCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccc
Q 020852          171 LLACNLT--DEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEI  248 (320)
Q Consensus       171 L~~aG~~--~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~  248 (320)
                      |.++|..  ++++++|+||++||+.+|+.++ +|||.+++|+..+|||+|++.|++|||+||||+||+||+++....+ .
T Consensus       112 L~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~-~  189 (448)
T d1w6ka1         112 LLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCP-H  189 (448)
T ss_dssp             HHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCT-T
T ss_pred             HHHhCCCCCccchHHHHHHHHHHHhhccCcC-CCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCc-c
Confidence            9999963  4568999999999999999874 6899999999999999999999999999999999999987754222 2


Q ss_pred             cCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccccccc--CCCCCC
Q 020852          249 VGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL--GMSKIP  303 (320)
Q Consensus       249 ~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~--~~~~~p  303 (320)
                      .++.+.++++.+||+||++|||+||||++||+++  +..+|+++||.+.  ++..+|
T Consensus       190 ~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~--~~~~l~~~~~~~~~~~~~~D~  244 (448)
T d1w6ka1         190 VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKR--GGHLLELLNPSEVFGDIMIDY  244 (448)
T ss_dssp             CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCC--SCGGGGGGCCCSSCSSCSSCC
T ss_pred             ccccccHHHHHHHHHHHHHhcCCCCCeeeccCCC--ChhhhhcccchhhhhccccCC
Confidence            4566789999999999999999999999999999  8999999999984  555555

PyMOL of d1w6ka1

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}	Back information, alignment and structure

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}	Back information, alignment and structure

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}	Back information, alignment and structure

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}	Back information, alignment and structure

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}	Back information, alignment and structure

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}	Back information, alignment and structure

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}	Back information, alignment and structure