Citrus Sinensis ID: 020873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mlwvwngsrysgLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRrsgqpifgpmHARNLLVLRALVGFLSLFSFVYSIqrlplsqatvlsfTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQavsgglvkpgeaislnvrgSDHMLAVLVGLFSSITGGISYCLIKaganasdqplvTVFSFGilaspaagiclfffeefvlpsfYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGmglsriapsfgRLVGCVLILVSVFYTMyigpekemndva
Flexible Loop (DISEMBL)
MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQavsgglvkpGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLektskvanVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMyigpekemndva
Low Complexity Region (SEG)
MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Disordered region (IsUnstruct)
*LWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG*********
Disordered Region (DISOPRED)
MLW****SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM************
Disordered Region (DISEMBL)
MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Disordered Region (DISPRO)
MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA*****************GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE*******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q04835	414	Uncharacterized membrane	yes	no	0.862	0.666	0.255	4e-12
Q08980	353	Probable transport protei	no	no	0.85	0.770	0.253	5e-12
Q8BY79	368	Solute carrier family 35	yes	no	0.812	0.706	0.229	9e-09
Q2M3R5	365	Solute carrier family 35	yes	no	0.725	0.635	0.245	2e-08

>sp|Q04835|YM87_YEAST Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR253C PE=1 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 14/290 (4%)

Query: 30  SDVFMVQSIPLFETVFMRCTVTLI--LSYLWLRRS--GQPIFGPMHARNLLVLRALVGFL 85
            D+   + I   + + +R  +T I  L Y+++ +S      FG    R  LVLR   GF 
Sbjct: 96  DDIANDRQIKPLQILLVRMVITYIGTLIYMYINKSTISDVPFGKPEVRKWLVLRGCTGFF 155

Query: 86  SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145
            +F   YS+  L +S A +++F AP +    + +ILRE+    E  G  +S  GV+ I R
Sbjct: 156 GVFGMYYSLMYLTISDAVLITFLAPSLTIFLSWVILRERFTKVEALGSLISLLGVVLIVR 215

Query: 146 RILTTQAVSGGLVKPGEAISLNVRGSD---HMLAVLVGLFSSITGGISYCLIK-AGANAS 201
                 +   G  +  ++ S  V  SD    ++A LVGL+  +     Y +I+  G  A 
Sbjct: 216 -----PSFLFGTPELTDSSSQIVESSDPKSRLIATLVGLWGVLGMSCVYIIIRYIGKRAH 270

Query: 202 DQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQL 260
               V+ FS         GI      +F +P S   ++L   L +  F  ++LL  G+Q 
Sbjct: 271 AIMSVSYFSLITAIVSFIGINTIPSMKFQIPHSKKQWILFGNLGVSGFIFQLLLTMGIQR 330

Query: 261 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310
           E+  + + + Y ++     W + L +  P+    +G ++I+ +  + + I
Sbjct: 331 ERAGRGSLMTYTQLLYAVFWDVALYKHWPNIWSWIGMIIIISATLWVIRI 380

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q08980|YP264_YEAST Probable transport protein YPL264C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL264C PE=1 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 4/276 (1%)

Query: 44  VFMRCTVTLILSYL-WLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQ 101
           V M  T    L Y+ W ++S   I +GP   R  L+LR ++GF  +F   +S+  L +S 
Sbjct: 57  VRMSITYCCTLVYMHWNKQSVPDIPWGPAPCRKWLILRGIMGFFGVFGMYFSLMYLSISD 116

Query: 102 ATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 161
           A +++F +P +    + ++L E     E  G  +SF GV+ I R        + G   P 
Sbjct: 117 AVLITFMSPTLTIFLSFLLLGEPFSKLEALGSLISFSGVVLIIRPTFLFGEQTQGQQSPQ 176

Query: 162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPL-VTVFSFGILASPAAG 220
           + I         ++A+ V L         Y +I+   N +   + V+ FS       A G
Sbjct: 177 DDIVETQNPKLRLIAIGVSLLGVCGLSSVYIIIRYIGNKAHAIMSVSYFSLVTTVVAALG 236

Query: 221 ICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQL 279
           + L       LP S+  + L L L I  F  ++LL  G+Q E+  + + + Y +V     
Sbjct: 237 VLLIPSMSLQLPHSWKQWGLFLNLGISGFIHQILLTMGIQRERAGRGSLMTYTQVIYAVF 296

Query: 280 WGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 315
           W + L    P+     G  +I+ S  + + +   K+
Sbjct: 297 WDVVLFHHWPNIWTWCGMAVIVSSTIWVINMRASKQ 332

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BY79|S35G1_MOUSE Solute carrier family 35 member G1 OS=Mus musculus GN=Slc35g1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 127/275 (46%), Gaps = 15/275 (5%)

Query: 32  VFMVQSIPLFETVFMRCTVTL--ILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFS 89
           V  VQ +   E    RC V +  I+  L  R++G    GP   R  L LR + G  ++  
Sbjct: 92  VKKVQGVHAVEISAFRCVVQMLVIIPCLIYRKTG--FIGPKGQRLFLFLRGVFGSSAMIL 149

Query: 90  FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 149
             Y+ Q   L+ ATV++F+ P+  SI A I L+EK  + +      +  GV+ I R    
Sbjct: 150 MYYAFQTTSLADATVIAFSCPVFTSIFAWIFLKEKYSLWDAFFTLFAIAGVILIVRPPFI 209

Query: 150 TQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF 209
             + + G+ +           S+H+      +  ++   I+  +++    + D   ++++
Sbjct: 210 FGSDTSGMRE---------SYSEHIKGTFAAIGHAVLAAITLVILRKMGKSVDY-FLSIW 259

Query: 210 SFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN 268
            + IL  P A I LF   E+ LP      L ++++ +L    ++ + + +Q+EK   VA 
Sbjct: 260 YYVILGLPEAIIILFVIGEWSLPYCGLDRLFLILIGLLGLGGQIFITKAVQIEKAGLVAI 319

Query: 269 VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVS 303
           ++ +++    ++ +      P++  + G + ++VS
Sbjct: 320 MKTMDIVFAFIFQIAFFDNVPTWWTVGGALCVVVS 354

Mus musculus (taxid: 10090)

>sp|Q2M3R5|S35G1_HUMAN Solute carrier family 35 member G1 OS=Homo sapiens GN=SLC35G1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 21/253 (8%)

Query: 25  FMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF 84
           F++ + DV  V+ I  F  VF    V   L Y   R++G    GP   R  L+LR ++G 
Sbjct: 88  FVKKVQDVHAVE-ISAFRCVFQMLVVIPCLIY---RKTG--FIGPKGQRIFLILRGVLGS 141

Query: 85  LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144
            ++    Y+ Q + L+ ATV++F++P+  SI A I L+EK    +      +  GV+ I 
Sbjct: 142 TAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILIV 201

Query: 145 RRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQP 204
           R      + + G+ +           S H+      + S++    +  +++    + D  
Sbjct: 202 RPPFLFGSDTSGMEE---------SYSGHLKGTFAAIGSAVFAASTLVILRKMGKSVDY- 251

Query: 205 LVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFF---AEVLLARGLQLE 261
            ++++ + +L    + I L    E+ LP  Y  L  L L  +  F    ++ + + LQ+E
Sbjct: 252 FLSIWYYVVLGLVESVIILSVLGEWSLP--YCGLDRLFLIFIGLFGLGGQIFITKALQIE 309

Query: 262 KTSKVANVQYIEV 274
           K   VA ++ ++V
Sbjct: 310 KAGPVAIMKTMDV 322

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
225447127	390	PREDICTED: uncharacterized protein LOC10	0.981	0.805	0.731	1e-130
224129018	393	predicted protein [Populus trichocarpa]	0.981	0.798	0.719	1e-127
147835022	413	hypothetical protein VITISV_004002 [Viti	0.981	0.760	0.682	1e-126
255568715	425	Transmembrane protein, putative [Ricinus	0.921	0.694	0.696	1e-116
297831648	401	integral membrane family protein [Arabid	0.965	0.770	0.644	1e-112
18396156	401	nodulin MtN21 /EamA-like transporter pro	0.965	0.770	0.654	1e-112
21554090	401	unknown [Arabidopsis thaliana]	0.965	0.770	0.650	1e-111
449444715	392	PREDICTED: uncharacterized protein LOC10	0.987	0.806	0.593	1e-103
357462229	475	Membrane protein, putative [Medicago tru	0.687	0.463	0.650	9e-74
148910334	387	unknown [Picea sitchensis]	0.971	0.803	0.447	5e-73

>gi|225447127|ref|XP_002271163.1| PREDICTED: uncharacterized protein LOC100256852 [Vitis vinifera] gi|297739206|emb|CBI28857.3| unnamed protein product [Vitis vinifera]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/317 (73%), Positives = 261/317 (82%), Gaps = 3/317 (0%)

Query: 1   MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR 60
           +LW W+GSR SGL+CMALSSTIY  M+ +SD+F  QSIPLFET F RCTVTLILSY WLR
Sbjct: 77  ILWAWSGSRCSGLLCMALSSTIYCIMEALSDIFSAQSIPLFETAFTRCTVTLILSYFWLR 136

Query: 61  RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
           RSGQPIFGP H R+LLV RAL+G+LSL SFVY IQRLPLSQA VLSFT PIMASI ARII
Sbjct: 137 RSGQPIFGPTHVRSLLVSRALMGYLSLLSFVYCIQRLPLSQAVVLSFTTPIMASIMARII 196

Query: 121 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVG 180
           L EKL IAEIGGLA SF GVLFIFR IL  Q   GGL K  EA ++ V GSDH+ AVLVG
Sbjct: 197 LHEKLNIAEIGGLACSFIGVLFIFRPILAAQ---GGLPKAEEANNIYVGGSDHIYAVLVG 253

Query: 181 LFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLM 240
           L SSI+GGISYCL +AGA ASDQP++TVF+FG+L SPAA IC F F++FVLPSFYSF LM
Sbjct: 254 LVSSISGGISYCLTRAGAKASDQPVITVFAFGMLGSPAAAICTFAFQDFVLPSFYSFFLM 313

Query: 241 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 300
           ++L++LAFFAEV LARGLQLEKTSK  N+QYIE AL+QLWG+G S+IAPSFGRLVGC LI
Sbjct: 314 VILAVLAFFAEVFLARGLQLEKTSKATNIQYIEAALSQLWGLGSSKIAPSFGRLVGCFLI 373

Query: 301 LVSVFYTMYIGPEKEMN 317
             S   TMY GP+KEM 
Sbjct: 374 FASTCCTMYFGPDKEME 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129018|ref|XP_002320480.1| predicted protein [Populus trichocarpa] gi|222861253|gb|EEE98795.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/317 (71%), Positives = 262/317 (82%), Gaps = 3/317 (0%)

Query: 1   MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR 60
           +LW+W GSRYSGL+C+A+SSTIYF M+V+SD F  QSIPLFET F RCT+TLILSYLWLR
Sbjct: 80  VLWIWGGSRYSGLLCVAISSTIYFVMEVLSDFFSAQSIPLFETAFARCTITLILSYLWLR 139

Query: 61  RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
            +GQPIFGP HAR  L  RAL G LSL SF+Y I+RLPLSQA VLSFT PIMASI ARII
Sbjct: 140 GNGQPIFGPAHARKFLFSRALTGCLSLLSFIYCIRRLPLSQAIVLSFTTPIMASIVARII 199

Query: 121 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVG 180
           L EKLKI ++GGLA SFFGVLFIFR+ILTTQ   G L++ GE   + + G +H+L VLV 
Sbjct: 200 LHEKLKIVDVGGLACSFFGVLFIFRQILTTQ---GALLRVGETNYIAIMGRNHVLTVLVA 256

Query: 181 LFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLM 240
           LFSSITGGISYCL+KAGA ASDQPL TVFSFGILA+PA G+C F FEEFVLP+FY+F LM
Sbjct: 257 LFSSITGGISYCLVKAGAKASDQPLATVFSFGILATPATGMCAFAFEEFVLPNFYTFFLM 316

Query: 241 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 300
           L+L +L+F AEV  ARGLQLEKTSK ANV Y+EVAL+QLWG+G  RI PSFG LVGC+LI
Sbjct: 317 LILGLLSFSAEVFFARGLQLEKTSKAANVLYMEVALSQLWGIGSWRITPSFGGLVGCLLI 376

Query: 301 LVSVFYTMYIGPEKEMN 317
           L+SV  T+YIGPEKEM 
Sbjct: 377 LISVCCTIYIGPEKEME 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835022|emb|CAN70194.1| hypothetical protein VITISV_004002 [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/340 (68%), Positives = 261/340 (76%), Gaps = 26/340 (7%)

Query: 1   MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR 60
           +LW W+GSR SGL+CMALSSTIY  M+ +SD+F  QSIPLFET F RCTVTLILSY WLR
Sbjct: 77  ILWAWSGSRCSGLLCMALSSTIYCIMEALSDIFSAQSIPLFETAFTRCTVTLILSYFWLR 136

Query: 61  RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
           RSGQPIFGP H R+LLV RAL+G+LSL SFVY IQRLPLSQA VLSFT PIMASI ARII
Sbjct: 137 RSGQPIFGPTHVRSLLVSRALMGYLSLLSFVYCIQRLPLSQAVVLSFTTPIMASIMARII 196

Query: 121 LREKLKIAEIG-----------------------GLALSFFGVLFIFRRILTTQAVSGGL 157
           L EKL IAEIG                       GLA SF GVLFIFR IL  Q   GGL
Sbjct: 197 LHEKLNIAEIGELYTYFCEAGGETDCFVBCIYFPGLACSFIGVLFIFRPILAAQ---GGL 253

Query: 158 VKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASP 217
            K  EA ++ V GSDH+ AVLVGL SSI+GGISYCL +AGA ASDQP++TVF+FG+L SP
Sbjct: 254 PKAEEANNIYVGGSDHIYAVLVGLVSSISGGISYCLTRAGAKASDQPVITVFAFGMLGSP 313

Query: 218 AAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALT 277
           AA IC F F++FVLPSFYSF LM++L++LAFFAEV LARGLQLEKTSK  N+QYIE AL+
Sbjct: 314 AAAICTFAFQDFVLPSFYSFFLMVILAVLAFFAEVFLARGLQLEKTSKATNIQYIEAALS 373

Query: 278 QLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 317
           QLWG+G S+IAPSFGRLVGC LI  S   TMY GP+KEM 
Sbjct: 374 QLWGLGSSKIAPSFGRLVGCFLIFASTCCTMYFGPDKEME 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568715|ref|XP_002525329.1| Transmembrane protein, putative [Ricinus communis] gi|223535388|gb|EEF37062.1| Transmembrane protein, putative [Ricinus communis]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/303 (69%), Positives = 247/303 (81%), Gaps = 8/303 (2%)

Query: 1   MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR 60
           +LWVW+GSRYSG++CMALSS+IYF M+++S  F  +SIPLFET FMRCT+ LILSY+WLR
Sbjct: 88  ILWVWSGSRYSGILCMALSSSIYFVMEILSHSFSTRSIPLFETAFMRCTIVLILSYIWLR 147

Query: 61  RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
           RSGQPIFG +HAR LL LRAL GFLSL SF+Y IQRLP SQA +L+FT PI+ASI AR++
Sbjct: 148 RSGQPIFGAVHARKLLFLRALTGFLSLLSFIYCIQRLPFSQAIILNFTTPIVASILARLM 207

Query: 121 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVG 180
           L EKLKIA+IGGL  SFFGVLFI+R+IL TQA        GEA + +  GS H+ AVL G
Sbjct: 208 LHEKLKIADIGGLTCSFFGVLFIYRQILRTQA--------GEANNTSASGSHHVYAVLAG 259

Query: 181 LFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLM 240
           L S ITGGISYC IKAGA ASDQP+VTVFSFG+L+SPAAGIC F FEEFV+P F SFLLM
Sbjct: 260 LLSLITGGISYCFIKAGAKASDQPVVTVFSFGLLSSPAAGICAFAFEEFVVPDFCSFLLM 319

Query: 241 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 300
           L+L +LAF  EVLLARGLQLEK SK  NVQYIE AL+QLWG+  SRI+ SF  LVGC+LI
Sbjct: 320 LILGVLAFIVEVLLARGLQLEKISKATNVQYIEAALSQLWGIDSSRISSSFAGLVGCLLI 379

Query: 301 LVS 303
           ++S
Sbjct: 380 IIS 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831648|ref|XP_002883706.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297329546|gb|EFH59965.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/318 (64%), Positives = 248/318 (77%), Gaps = 9/318 (2%)

Query: 3   WVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS 62
           W+W+GSRYSGL+CM LSST+Y  M+++SD F VQ IPLFET FMRCT+ LILSYLWL+R 
Sbjct: 88  WIWSGSRYSGLLCMVLSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIILILSYLWLKRI 147

Query: 63  GQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILR 122
           GQPIFGP HAR LLV RALVG+LSLFSF++SIQ LPLSQA VLSF  PIMASIAAR+++ 
Sbjct: 148 GQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIMASIAARVVMH 207

Query: 123 EKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 182
           EKLKI +IGGLA SFFGVLFIF   LT Q  S       E  + N++G+ H+ A  +GLF
Sbjct: 208 EKLKITDIGGLACSFFGVLFIFGPTLTVQVGS-------EGTNENLKGNHHIYAFWLGLF 260

Query: 183 SSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLV 242
           SSITGGI+YCLIKA A AS+QP++TVFSFG++A PAA IC+F FE FVLP+F + + M+V
Sbjct: 261 SSITGGITYCLIKAAAKASEQPVITVFSFGLVACPAAAICMFSFESFVLPAFDTLITMIV 320

Query: 243 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPS--FGRLVGCVLI 300
           L +LAF AEVLLARGLQLEK SK AN+ YIEV L+QLW +   +      F RLVGC+LI
Sbjct: 321 LGLLAFCAEVLLARGLQLEKISKAANILYIEVVLSQLWIVSTGKAGSPGLFSRLVGCLLI 380

Query: 301 LVSVFYTMYIGPEKEMND 318
           L+SV YT+Y+GP K+   
Sbjct: 381 LISVSYTVYMGPAKDTES 398

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396156|ref|NP_565328.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] gi|20198220|gb|AAM15467.1| Expressed protein [Arabidopsis thaliana] gi|109134115|gb|ABG25056.1| At2g05755 [Arabidopsis thaliana] gi|110738794|dbj|BAF01320.1| hypothetical protein [Arabidopsis thaliana] gi|330250873|gb|AEC05967.1| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/318 (65%), Positives = 249/318 (78%), Gaps = 9/318 (2%)

Query: 3   WVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS 62
           W+W+GSRYSGL+CMALSST+Y  M+++SD F VQ IPLFET FMRCT+ LILSYLWL+R 
Sbjct: 88  WIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIILILSYLWLKRI 147

Query: 63  GQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILR 122
           GQPIFGP HAR LLV RALVG+LSLFSF++SIQ LPLSQA VLSF  PIMASIAAR+++ 
Sbjct: 148 GQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIMASIAARVVMH 207

Query: 123 EKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 182
           EKLKI +IGGLA SFFGVLFIF   LT Q    GL    E  + N++G+ H+ A L+GLF
Sbjct: 208 EKLKITDIGGLACSFFGVLFIFGPTLTVQV---GL----EGKNENLKGNHHIYAFLLGLF 260

Query: 183 SSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLV 242
           SSITGGI+YCLIKA A AS+QP++TV SFG++A PA  IC+F FE FVLP+F + + M+V
Sbjct: 261 SSITGGITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESFVLPAFDTLVSMIV 320

Query: 243 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPS--FGRLVGCVLI 300
           L +LAF AEVLLARGLQLEK SK ANV YIEV L+QLW +   +      F RLVGC+LI
Sbjct: 321 LGLLAFCAEVLLARGLQLEKISKAANVLYIEVVLSQLWLVSTGKTGSPGLFSRLVGCLLI 380

Query: 301 LVSVFYTMYIGPEKEMND 318
           L+SV YT+YIGP K+   
Sbjct: 381 LLSVGYTVYIGPAKDTES 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554090|gb|AAM63171.1| unknown [Arabidopsis thaliana]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/318 (65%), Positives = 248/318 (77%), Gaps = 9/318 (2%)

Query: 3   WVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS 62
           W+W+GSRYSGL+CMALSST+Y  M+++SD F VQ IPLFET FMRCT+ LILSYLWL+R 
Sbjct: 88  WIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIILILSYLWLKRI 147

Query: 63  GQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILR 122
           GQPIFGP HAR LLV RALVG+LSLFSF++SIQ LPLSQA VLSF  PIMASIAAR+++ 
Sbjct: 148 GQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIMASIAARVVMH 207

Query: 123 EKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 182
           EKLKI +IGGLA SFFGVLFIF   LT Q    GL    E  + N++ + H+ A L+GLF
Sbjct: 208 EKLKITDIGGLACSFFGVLFIFGPTLTVQV---GL----EGKNENLKENHHIYAFLLGLF 260

Query: 183 SSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLV 242
           SSITGGI+YCLIKA A AS+QP++TV SFG++A PA  IC+F FE FVLP+F + + M+V
Sbjct: 261 SSITGGITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESFVLPAFDTLVSMIV 320

Query: 243 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPS--FGRLVGCVLI 300
           L +LAF AEVLLARGLQLEK SK ANV YIEV L+QLW +   +      F RLVGC+LI
Sbjct: 321 LGLLAFCAEVLLARGLQLEKISKAANVLYIEVVLSQLWLVSTGKTGSPGLFSRLVGCLLI 380

Query: 301 LVSVFYTMYIGPEKEMND 318
           L+SV YT+YIGP K+   
Sbjct: 381 LLSVGYTVYIGPAKDTES 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444715|ref|XP_004140119.1| PREDICTED: uncharacterized protein LOC101208388 [Cucumis sativus] gi|449481153|ref|XP_004156097.1| PREDICTED: uncharacterized protein LOC101226055 [Cucumis sativus]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 234/317 (73%), Gaps = 1/317 (0%)

Query: 1   MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR 60
           ++W+W+GSRYSGL+C +LSS  YF M+V+  VF  QSIP+ E  F RC +  ILSYLWLR
Sbjct: 77  IIWIWSGSRYSGLLCASLSSIFYFAMEVLMGVFSAQSIPIIEMAFTRCVIITILSYLWLR 136

Query: 61  RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
           RS QPIFG  H R LLV RAL G LS+ SF+YSI+RL +SQA VLSFT PI+AS+AAR I
Sbjct: 137 RSEQPIFGQPHVRKLLVSRALTGLLSMMSFIYSIRRLHISQAIVLSFTTPILASVAARFI 196

Query: 121 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVG 180
           L EK K ++ GGLA SF GVL IF+ + T+Q    GL K G+  +    GS H  AVLVG
Sbjct: 197 LNEKFKFSDFGGLACSFLGVLLIFQDLFTSQGTEAGLTKAGKGSTTPSLGSHHAYAVLVG 256

Query: 181 LFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLM 240
             +SI G +SYCLI+A A ASDQP+VTVFSFG+LA P  GIC   FE+ VLPS YSFL+M
Sbjct: 257 FVASIAGAVSYCLIRASAKASDQPVVTVFSFGLLAGPVTGICTVVFEDLVLPSVYSFLVM 316

Query: 241 LVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 300
           LVL +LAF AEV  ARGLQLEKTSKV N++++E +L QLW +G+  + P FGR+VG +LI
Sbjct: 317 LVLGLLAFLAEVCWARGLQLEKTSKVNNLRFMEASLVQLWHIGILGVVP-FGRIVGTLLI 375

Query: 301 LVSVFYTMYIGPEKEMN 317
            +S+ +T Y+GP+KEM 
Sbjct: 376 FLSLCWTFYVGPDKEME 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462229|ref|XP_003601396.1| Membrane protein, putative [Medicago truncatula] gi|355490444|gb|AES71647.1| Membrane protein, putative [Medicago truncatula]

 Score =  283 bits (723), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 145/223 (65%), Positives = 172/223 (77%), Gaps = 3/223 (1%)

Query: 95  QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS 154
           Q+LP  QA VL+ T PIMAS+ AR  LREKLKIA+I  LA SFFGVLF FR +L TQ   
Sbjct: 256 QKLPFVQAVVLNSTTPIMASVMARFFLREKLKIADIASLACSFFGVLFFFREMLATQ--- 312

Query: 155 GGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGIL 214
           G L K  EA + N + +  + A+LVG+FSSI GG SYCLIKAGA ASDQPL+TVFSFGIL
Sbjct: 313 GQLDKVDEASNANAKPTHQIFAILVGIFSSIIGGTSYCLIKAGAKASDQPLLTVFSFGIL 372

Query: 215 ASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEV 274
           ASPA GIC + FE+FVLP+  S LLM+VL ILAFFAEVLLARGLQLE+  KVAN+QY+E 
Sbjct: 373 ASPAMGICTYAFEDFVLPTVQSILLMVVLGILAFFAEVLLARGLQLERMGKVANIQYMEA 432

Query: 275 ALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 317
           ALTQ W + L+ ++P+F  LVG +LI+VSV  TMYIGP+KEM 
Sbjct: 433 ALTQFWSLTLTLVSPAFDHLVGILLIVVSVCCTMYIGPDKEME 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910334|gb|ABR18246.1| unknown [Picea sitchensis]

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 141/315 (44%), Positives = 208/315 (66%), Gaps = 4/315 (1%)

Query: 1   MLWVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLR 60
           ++W W GSRYSG++CMALSS +Y  M +  ++F   S P +ET+F+RC V L+ +++WLR
Sbjct: 72  LIWAWGGSRYSGMVCMALSSLMYSIMGLFVELFAATSAPSYETIFIRCAVILVAAFIWLR 131

Query: 61  RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
           ++GQP+FG  H   LL+ RA+ G+LSL  F YSIQ LPL  A VL+FT P MA+I A  I
Sbjct: 132 KTGQPLFGLPHVWRLLMARAITGYLSLLGFFYSIQVLPLHDAIVLNFTTPFMAAILASFI 191

Query: 121 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHML-AVLV 179
           L+EKL + E+GG+  +F G+  +++ I   Q   G   +   +  L++ G  + + ++L+
Sbjct: 192 LQEKLGVIELGGIFCNFLGIFLVYQPIPFLQ---GQRPESNGSTGLDIPGRQYYIHSILI 248

Query: 180 GLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLL 239
            L S++TGG +YC I+A A AS+QPLVTVF+F  +A P+A +C+F F++FVLP  Y F+ 
Sbjct: 249 ALLSAVTGGANYCFIRAAAKASEQPLVTVFAFAAVACPSAAMCMFLFQKFVLPGIYPFIG 308

Query: 240 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVL 299
           M+++S+LAF AEVLLARGLQLEK S+  +  YIE   + + G+      PS   L G  +
Sbjct: 309 MVIISLLAFVAEVLLARGLQLEKASRATSNLYIEAFASHVLGIMFLGQTPSVSGLFGAAI 368

Query: 300 ILVSVFYTMYIGPEK 314
           I++S     Y G +K
Sbjct: 369 IIISTMAVSYFGNDK 383

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:505006238	401	AT2G05755 [Arabidopsis thalian	0.956	0.763	0.663	1.7e-105
DICTYBASE|DDB_G0282673	510	DDB_G0282673 "Uncharacterized	0.825	0.517	0.290	6e-23
DICTYBASE|DDB_G0292606	698	tmem20 "EamA-like transporter	0.893	0.409	0.273	3.8e-22
CGD|CAL0006171	460	orf19.2204 [Candida albicans (	0.843	0.586	0.276	6.6e-21
UNIPROTKB|Q5A2K2	460	CaO19.2204 "Putative uncharact	0.843	0.586	0.276	6.6e-21
UNIPROTKB|G4NII1	438	MGG_09833 "Uncharacterized pro	0.340	0.248	0.360	8.1e-19
SGD|S000004866	414	YMR253C "Putative protein of u	0.856	0.661	0.258	7.1e-17
SGD|S000006185	353	YPL264C "Putative membrane pro	0.859	0.779	0.265	4.6e-16
UNIPROTKB|Q47WD7	291	CPS_4235 "Membrane protein" [C	0.331	0.364	0.324	2.3e-15
TIGR_CMR|CPS_4235	291	CPS_4235 "membrane protein" [C	0.331	0.364	0.324	2.3e-15

TAIR|locus:505006238 AT2G05755 [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 209/315 (66%), Positives = 250/315 (79%)

Query:     3 WVWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS 62
             W+W+GSRYSGL+CMALSST+Y  M+++SD F VQ IPLFET FMRCT+ LILSYLWL+R 
Sbjct:    88 WIWSGSRYSGLLCMALSSTLYLIMELVSDTFSVQPIPLFETAFMRCTIILILSYLWLKRI 147

Query:    63 GQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILR 122
             GQPIFGP HAR LLV RALVG+LSLFSF++SIQ LPLSQA VLSF  PIMASIAAR+++ 
Sbjct:   148 GQPIFGPAHARKLLVSRALVGYLSLFSFIFSIQMLPLSQAIVLSFLNPIMASIAARVVMH 207

Query:   123 EKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 182
             EKLKI +IGGLA SFFGVLFIF   LT Q    GL    E    N++G+ H+ A L+GLF
Sbjct:   208 EKLKITDIGGLACSFFGVLFIFGPTLTVQV---GLEGKNE----NLKGNHHIYAFLLGLF 260

Query:   183 SSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLV 242
             SSITGGI+YCLIKA A AS+QP++TV SFG++A PA  IC+F FE FVLP+F + + M+V
Sbjct:   261 SSITGGITYCLIKAAAKASEQPVITVLSFGLVACPATAICMFSFESFVLPAFDTLVSMIV 320

Query:   243 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRI-APS-FGRLVGCVLI 300
             L +LAF AEVLLARGLQLEK SK ANV YIEV L+QLW +   +  +P  F RLVGC+LI
Sbjct:   321 LGLLAFCAEVLLARGLQLEKISKAANVLYIEVVLSQLWLVSTGKTGSPGLFSRLVGCLLI 380

Query:   301 LVSVFYTMYIGPEKE 315
             L+SV YT+YIGP K+
Sbjct:   381 LLSVGYTVYIGPAKD 395

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0282673 DDB_G0282673 "Uncharacterized membrane protein YMR253C" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 82/282 (29%), Positives = 138/282 (48%)

Query:     4 VWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMR---CTVTLILSYLWLR 60
             +W  S++ G++ + LS+ ++  M  ++   + + +   E  F R   C +  +L    L+
Sbjct:   211 IW--SKFQGIILLVLSTGLFSVM-ALAVKQLSKELSSLEIAFFRSFYCFIGCLLILFPLK 267

Query:    61 RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120
              +  P+ GP   R  L LR L G + L ++ YSI  LPLS+A ++SFT+P+M +  A ++
Sbjct:   268 IN--PL-GPKEKRLFLSLRGLSGTIGLCAYFYSITVLPLSEAVIISFTSPVMTAALAAVL 324

Query:   121 LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDH-MLAVLV 179
             L+EK    +     LS  G+  I +               G   S +  G  H +L +  
Sbjct:   325 LKEKWGPVQAICAFLSLCGITVISKPSFLFHDDHND----GSTAS-HAEGDPHKLLYIFT 379

Query:   180 GLFSSITGGISYCLI-KAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFL 238
             G+  +  G ISY  + K G N     LVT FS G LAS       F F+ F  PS  ++ 
Sbjct:   380 GIIGAFFGAISYIAVRKVGPNVHAFVLVTYFS-G-LASLVTFPSAFIFQTFKWPSLKAWG 437

Query:   239 LMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLW 280
              + ++ +    A+  + RG+QLEK +K A + Y+++  T +W
Sbjct:   438 WITLMGVFGTVAQGAVNRGIQLEKAAKAAAMNYLQIIFTFIW 479

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0292606 tmem20 "EamA-like transporter Tmem20" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 83/303 (27%), Positives = 147/303 (48%)

Query:    12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMH 71
             GL+ +  ++ ++ FM  +  +   +   L E  FMR    LI   + L    +   GP +
Sbjct:   406 GLILLVFAAFLFSFMAYLVKLISKEFDSL-EIAFMRSFYGLIGCIIILFSLRENPLGPKN 464

Query:    72 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIG 131
              R  L  R L G +SL ++ Y++  LPLS+A ++SFT+P++ +  A ++L+EK    E  
Sbjct:   465 VRWFLAARGLSGAISLCAYFYTLTVLPLSEAVIISFTSPVITAALAAVVLKEKWGGIEAI 524

Query:   132 GLALSFFGVLFIFR-RILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 190
                LS  GV+ + +   L      G   + GE        S  +L VL+G+  +    +S
Sbjct:   525 CAFLSLCGVVVVSKPSFLFHHHTDGSTTENGE-------DSGKLLYVLIGVGGAFFTAVS 577

Query:   191 YCLIKAGANASDQPLVTVFSFGILASPAAGICL---FFFEEFVLPSFYSFLLMLVLSILA 247
             Y  ++     S  P V V  F  ++S    +CL   F F+ FV PS  ++  + ++ ++A
Sbjct:   578 YIAVRK-VGPSVNPFVLVIYFSAVSS---ALCLPSSFAFQTFVWPSLKAWGYITLIGVVA 633

Query:   248 FFAEVLLARGLQL-EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 306
               A+  +  G+QL +KTS  A + Y+++  T +W + L      +  ++G +LIL     
Sbjct:   634 TIAQGAVNAGIQLSKKTSTAAAMNYLQIIFTFIWQITLMHQPLDWITILGALLILCCAGI 693

Query:   307 TMY 309
             T +
Sbjct:   694 TAF 696

GO:0016020 "membrane" evidence=IEA

CGD|CAL0006171 orf19.2204 [Candida albicans (taxid:5476)]

 Score = 251 (93.4 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 78/282 (27%), Positives = 127/282 (45%)

Query:    42 ETVFMRCTVTLI--LSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 98
             + +F+R  +T I  L Y+ + RS     FGP   R LL+LR LVGF  +F   +S+Q L 
Sbjct:   140 QILFVRMFITYICCLLYMAITRSVPDAPFGPKPIRKLLLLRGLVGFFGVFGMYFSLQYLS 199

Query:    99 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV 158
             LS A  L+F  P++ +  A ++L EK  I E      S  GV+ I +        S    
Sbjct:   200 LSDAVALTFLVPMVTAFLAFVLLHEKYSILEAICSVFSLAGVVLIAKPTFIFGNESNKET 259

Query:   159 KPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLI--KAGANASDQPLVTVFSFGILAS 216
                E I  +      +LA +VGL   + G  S  ++  K G NA   PL++V  F +   
Sbjct:   260 GNDETIESS-SSEKRILATIVGLIG-VCGASSVYIVLRKIGMNA--HPLLSVSYFALTCC 315

Query:   217 PAAGICLFFFEE--FVLPS-FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE 273
                 + +       FVLP+  Y + L  ++    FF +  L  G+Q  K ++ + + Y  
Sbjct:   316 IVTFLAILVIPSLTFVLPTNAYQWTLFFIIGFSGFFMQFSLTAGVQRVKAARASLMAYSG 375

Query:   274 VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 315
             +    +W + +    P     +G  LI+ +    +   P++E
Sbjct:   376 MIFAVVWDLTIWHHFPGILSFLGITLIIGNAIIILKFKPQQE 417

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A2K2 CaO19.2204 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 251 (93.4 bits), Expect = 6.6e-21, P = 6.6e-21
 Identities = 78/282 (27%), Positives = 127/282 (45%)

Query:    42 ETVFMRCTVTLI--LSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLP 98
             + +F+R  +T I  L Y+ + RS     FGP   R LL+LR LVGF  +F   +S+Q L 
Sbjct:   140 QILFVRMFITYICCLLYMAITRSVPDAPFGPKPIRKLLLLRGLVGFFGVFGMYFSLQYLS 199

Query:    99 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV 158
             LS A  L+F  P++ +  A ++L EK  I E      S  GV+ I +        S    
Sbjct:   200 LSDAVALTFLVPMVTAFLAFVLLHEKYSILEAICSVFSLAGVVLIAKPTFIFGNESNKET 259

Query:   159 KPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLI--KAGANASDQPLVTVFSFGILAS 216
                E I  +      +LA +VGL   + G  S  ++  K G NA   PL++V  F +   
Sbjct:   260 GNDETIESS-SSEKRILATIVGLIG-VCGASSVYIVLRKIGMNA--HPLLSVSYFALTCC 315

Query:   217 PAAGICLFFFEE--FVLPS-FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE 273
                 + +       FVLP+  Y + L  ++    FF +  L  G+Q  K ++ + + Y  
Sbjct:   316 IVTFLAILVIPSLTFVLPTNAYQWTLFFIIGFSGFFMQFSLTAGVQRVKAARASLMAYSG 375

Query:   274 VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 315
             +    +W + +    P     +G  LI+ +    +   P++E
Sbjct:   376 MIFAVVWDLTIWHHFPGILSFLGITLIIGNAIIILKFKPQQE 417

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NII1 MGG_09833 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 163 (62.4 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
 Identities = 40/111 (36%), Positives = 53/111 (47%)

Query:    37 SIPLFETVFMRCTVTLILS--YLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSI 94
             S      +F+R   T IL   Y+W +      FG    R LL+LR   GF  L    YS+
Sbjct:   102 SFHALHVIFVRMLATAILGLLYMWWKSVPDAPFGDRRVRGLLLLRGASGFSGLLGLYYSL 161

Query:    95 QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145
               LPLS AT +SF  P + +I   + L+E +   E     L+F GVL I R
Sbjct:   162 SYLPLSDATFISFIIPAITAIVCFVFLKEPMSKHETFAGVLAFTGVLLIAR 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000004866 YMR253C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 224 (83.9 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 75/290 (25%), Positives = 134/290 (46%)

Query:    31 DVFMVQSIPLFETVFMRCTVTLI--LSYLWLRRS--GQPIFGPMHARNLLVLRALVGFLS 86
             D+   + I   + + +R  +T I  L Y+++ +S      FG    R  LVLR   GF  
Sbjct:    97 DIANDRQIKPLQILLVRMVITYIGTLIYMYINKSTISDVPFGKPEVRKWLVLRGCTGFFG 156

Query:    87 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKL-KIAEIGGLALSFFGVLFIFR 145
             +F   YS+  L +S A +++F AP +    + +ILRE+  K+  +G L +S  GV+ I R
Sbjct:   157 VFGMYYSLMYLTISDAVLITFLAPSLTIFLSWVILRERFTKVEALGSL-ISLLGVVLIVR 215

Query:   146 RILTTQAVSGGLVKPGEAISLNVRGSD---HMLAVLVGLFSSITGGISYCLIK-AGANAS 201
                   +   G  +  ++ S  V  SD    ++A LVGL+  +     Y +I+  G  A 
Sbjct:   216 -----PSFLFGTPELTDSSSQIVESSDPKSRLIATLVGLWGVLGMSCVYIIIRYIGKRAH 270

Query:   202 DQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQL 260
                 V+ FS         GI      +F +P S   ++L   L +  F  ++LL  G+Q 
Sbjct:   271 AIMSVSYFSLITAIVSFIGINTIPSMKFQIPHSKKQWILFGNLGVSGFIFQLLLTMGIQR 330

Query:   261 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310
             E+  + + + Y ++     W + L +  P+    +G ++I+ +  + + I
Sbjct:   331 ERAGRGSLMTYTQLLYAVFWDVALYKHWPNIWSWIGMIIIISATLWVIRI 380

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000006185 YPL264C "Putative membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 216 (81.1 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 75/282 (26%), Positives = 126/282 (44%)

Query:    44 VFMRCTVTLILSYL-WLRRSGQPI-FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQ 101
             V M  T    L Y+ W ++S   I +GP   R  L+LR ++GF  +F   +S+  L +S 
Sbjct:    57 VRMSITYCCTLVYMHWNKQSVPDIPWGPAPCRKWLILRGIMGFFGVFGMYFSLMYLSISD 116

Query:   102 ATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 161
             A +++F +P +    + ++L E     E  G  +SF GV+ I R        + G   P 
Sbjct:   117 AVLITFMSPTLTIFLSFLLLGEPFSKLEALGSLISFSGVVLIIRPTFLFGEQTQGQQSPQ 176

Query:   162 EAISLNVRGSDHMLAVLVGLFSSITGGIS-YCLIKAGANASDQPL-VTVFSFGILASPAA 219
             + I         ++A+ V L   + G  S Y +I+   N +   + V+ FS       A 
Sbjct:   177 DDIVETQNPKLRLIAIGVSLLG-VCGLSSVYIIIRYIGNKAHAIMSVSYFSLVTTVVAAL 235

Query:   220 GICLFFFEEFVLP-SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQ 278
             G+ L       LP S+  + L L L I  F  ++LL  G+Q E+  + + + Y +V    
Sbjct:   236 GVLLIPSMSLQLPHSWKQWGLFLNLGISGFIHQILLTMGIQRERAGRGSLMTYTQVIYAV 295

Query:   279 LWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMNDVA 320
              W + L    P+     G  +I+ S  + + +   K+ N VA
Sbjct:   296 FWDVVLFHHWPNIWTWCGMAVIVSSTIWVINMRASKQ-NVVA 336

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISM

UNIPROTKB|Q47WD7 CPS_4235 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query:    38 IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 97
             IP+ E V  R  V+ I+SY  ++R    ++G  H + LL+ R  VG  +L    Y++  L
Sbjct:    38 IPVLEIVAARAIVSGIISYADIKRKKISLWG--HNKALLIARGTVGSFALMFVYYAVTTL 95

Query:    98 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145
             PL++ATVL +  P+  ++ A   L+E ++ + I  +A+S  G+  I +
Sbjct:    96 PLAEATVLQYLHPVFTAVLAVFFLKETIQRSTIACIAISLLGLFIIIQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4235 CPS_4235 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 157 (60.3 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 35/108 (32%), Positives = 61/108 (56%)

Query:    38 IPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRL 97
             IP+ E V  R  V+ I+SY  ++R    ++G  H + LL+ R  VG  +L    Y++  L
Sbjct:    38 IPVLEIVAARAIVSGIISYADIKRKKISLWG--HNKALLIARGTVGSFALMFVYYAVTTL 95

Query:    98 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145
             PL++ATVL +  P+  ++ A   L+E ++ + I  +A+S  G+  I +
Sbjct:    96 PLAEATVLQYLHPVFTAVLAVFFLKETIQRSTIACIAISLLGLFIIIQ 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
pfam00892	126	pfam00892, EamA, EamA-like transporter family	8e-08
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	1e-07

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 33  FMVQSIPLFETVFMRCTVT--LILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 90
            +++ I        R  +   L++  L+L R    +        LL L      L    +
Sbjct: 12  KLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLY 71

Query: 91  VYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145
            Y+++ +  S A+V++  +P+   I + ++L EKL + ++ G+ L   GVL I  
Sbjct: 72  FYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 54/301 (17%), Positives = 110/301 (36%), Gaps = 22/301 (7%)

Query: 11  SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM 70
            GL+ + L   ++    +   + +    P      +R  +  +L    L    + +   +
Sbjct: 7   LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPAL 66

Query: 71  HARN-LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIIL-REKLKIA 128
                LL+L  L   L       +++    S A+++    P+  ++ A ++L  E+L + 
Sbjct: 67  RPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL 126

Query: 129 EIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGG 188
           +I G+ L+  GVL I         +S                   +L +L+ L +++   
Sbjct: 127 QILGILLALAGVLLILLGGGGGGILS-------------------LLGLLLALAAALLWA 167

Query: 189 ISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAF 248
           +   L+K  +      L  +    +LA     +         + S    LL+ +      
Sbjct: 168 LYTALVKRLSRLGPVTLALLLQL-LLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTG 226

Query: 249 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 308
            A +L    L+L   S VA +  +E     L G+ L     S  +L+G  L+++ V    
Sbjct: 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286

Query: 309 Y 309
            
Sbjct: 287 L 287

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	100.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	100.0
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.97
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.97
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.96
COG2962	293	RarD Predicted permeases [General function predict	99.94
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.93
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.93
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.92
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.87
KOG2765	416	consensus Predicted membrane protein [Function unk	99.81
COG2510	140	Predicted membrane protein [Function unknown]	99.78
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.67
COG2510	140	Predicted membrane protein [Function unknown]	99.66
KOG1580	337	consensus UDP-galactose transporter related protei	99.66
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.63
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.59
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.57
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.56
KOG2766	336	consensus Predicted membrane protein [Function unk	99.52
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.51
KOG1581	327	consensus UDP-galactose transporter related protei	99.5
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.42
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.4
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.37
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.36
PLN00411	358	nodulin MtN21 family protein; Provisional	99.33
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.25
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.25
PRK11689	295	aromatic amino acid exporter; Provisional	99.23
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.23
PRK13499	345	rhamnose-proton symporter; Provisional	99.22
PRK11272	292	putative DMT superfamily transporter inner membran	99.19
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.19
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.18
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.16
PRK15430	296	putative chloramphenical resistance permease RarD;	99.08
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.03
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.03
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	99.03
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.99
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.99
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.93
KOG3912	372	consensus Predicted integral membrane protein [Gen	98.91
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.88
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.86
KOG1582	367	consensus UDP-galactose transporter related protei	98.86
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.85
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.83
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.82
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.78
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.77
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.75
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.64
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.63
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.59
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.55
COG2962	293	RarD Predicted permeases [General function predict	98.55
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.48
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.36
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.2
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	98.18
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.01
PRK10650	109	multidrug efflux system protein MdtI; Provisional	98.0
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.0
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.99
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.96
COG2076	106	EmrE Membrane transporters of cations and cationic	97.95
PRK11431	105	multidrug efflux system protein; Provisional	97.88
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.88
PRK13499	345	rhamnose-proton symporter; Provisional	97.84
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.8
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.79
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.79
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.64
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.59
KOG1581	327	consensus UDP-galactose transporter related protei	97.54
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.49
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.48
PRK11431	105	multidrug efflux system protein; Provisional	97.37
COG2076	106	EmrE Membrane transporters of cations and cationic	97.35
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.32
KOG1580	337	consensus UDP-galactose transporter related protei	97.29
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.17
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.13
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.07
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.03
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.95
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.92
KOG2765	416	consensus Predicted membrane protein [Function unk	96.92
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.34
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.18
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.15
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	95.59
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	94.85
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.48
KOG1582	367	consensus UDP-galactose transporter related protei	94.19
KOG4831	125	consensus Unnamed protein [Function unknown]	93.77
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.34
KOG1443	349	consensus Predicted integral membrane protein [Fun	92.55
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	92.53
PRK02237	109	hypothetical protein; Provisional	91.11
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	88.6
PRK02237	109	hypothetical protein; Provisional	87.27
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	86.86
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	86.68
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	82.5
KOG2766	336	consensus Predicted membrane protein [Function unk	81.92
KOG4831	125	consensus Unnamed protein [Function unknown]	81.71
COG1742	109	Uncharacterized conserved protein [Function unknow	80.12

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=3.1e-35  Score=263.57  Aligned_cols=308  Identities=14%  Similarity=0.130  Sum_probs=231.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC--C-CcCCchhHHHHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ--P-IFGPMHARNLLVLRALVGF   84 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~   84 (320)
                      ++.+.+..+++.-++++...++.|.+.+.+++|..+.++|+.++.+++.++.+.+++  + ++.+++.+..+.+.++.++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999999999999999888764432  1 1122344556666666666


Q ss_pred             HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHH------hcCcCcHHHHHHHHHHHHHHHHhhcccccccccc--CC
Q 020873           85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS--GG  156 (320)
Q Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~------l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~--~~  156 (320)
                      ..+.+++.+++++++++++++.++.|+++.++++++      +|||+++++++|++++++|+.++..++......+  +.
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            677789999999999999999999999999999999      6999999999999999999998775432110000  00


Q ss_pred             ccCCCcccc-ccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc-----c
Q 020873          157 LVKPGEAIS-LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-----V  230 (320)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  230 (320)
                      -.+.++... ....+.+...|+++++.++++||+|++..|+..++.++.....+++...+.....+.....++.     .
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI  249 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence            000000000 0011122356999999999999999999999765554554555555555554444333333221     1


Q ss_pred             -cCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          231 -LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       231 -~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                       ..+.. ...+++.++.+.++|.+|++++++.+|++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+
T Consensus       250 ~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        250 IHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             eccchH-HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence             11222 3345667776778999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCcccc
Q 020873          310 IGPEKEM  316 (320)
Q Consensus       310 ~~~~~~~  316 (320)
                      .++++.|
T Consensus       329 ~~~~~~~  335 (358)
T PLN00411        329 GKANEEK  335 (358)
T ss_pred             hhhhhhh
Confidence            6655543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=8e-35  Score=257.01  Aligned_cols=286  Identities=13%  Similarity=0.071  Sum_probs=219.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF   88 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (320)
                      +.++++++++++++||.+++..|... +++||..+.++|+..+.+++.++..++   + .+++.++....+++.....+.
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~   76 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVGFP---R-LRQFPKRYLLAGGLLFVSYEI   76 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcccc---c-cccccHHHHHHHhHHHHHHHH
Confidence            45788899999999999999999987 899999999999999998887653211   1 122334555666666667777


Q ss_pred             HHHHHHhc----CCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccc
Q 020873           89 SFVYSIQR----LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAI  164 (320)
Q Consensus        89 ~~~~a~~~----~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      +++.++++    .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++.....          .+
T Consensus        77 ~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~----------~~  146 (295)
T PRK11689         77 CLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL----------AE  146 (295)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh----------hh
Confidence            77777754    67788889999999999999999999999999999999999999999866421100          00


Q ss_pred             cccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCC-cccCchhHHHHHHHH
Q 020873          165 SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FVLPSFYSFLLMLVL  243 (320)
Q Consensus       165 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~  243 (320)
                      . ......+..|+.+++.++++||.|.+..||..++ .++....  ....+. ...+.....+. ....+.+.|..+.+.
T Consensus       147 ~-~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~  221 (295)
T PRK11689        147 L-INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLF--FILTAL-ALWIKYFLSPQPAMVFSLPAIIKLLLA  221 (295)
T ss_pred             h-hhccccChHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHH--HHHHHH-HHHHHHHHhcCccccCCHHHHHHHHHH
Confidence            0 0001123569999999999999999999997644 3444332  222222 22222222222 223466778888888


Q ss_pred             HHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873          244 SILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  314 (320)
Q Consensus       244 gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~  314 (320)
                      ++.+.++|.+|++++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++...+++++
T Consensus       222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~  292 (295)
T PRK11689        222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK  292 (295)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence            87679999999999999999999999999999999999999999999999999999999998887665544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=1e-33  Score=249.76  Aligned_cols=275  Identities=16%  Similarity=0.108  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHH-HHHHHHHH
Q 020873           13 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFV   91 (320)
Q Consensus        13 ~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   91 (320)
                      +...++..++||.++++.|... ++.||.+++++|+.++.+++.++...++++. .+++.++.....|... ...+.+++
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~   87 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMVT   87 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999987 7999999999999999999888776655443 2344455555555544 56788889


Q ss_pred             HHH-hcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccC
Q 020873           92 YSI-QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRG  170 (320)
Q Consensus        92 ~a~-~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (320)
                      .+. +++++++++++.++.|+++.+++++ +|||+++++++|++++++|+.++..++.                     .
T Consensus        88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~---------------------~  145 (292)
T PRK11272         88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN---------------------L  145 (292)
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc---------------------c
Confidence            998 9999999999999999999999985 7999999999999999999998864321                     0


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCC-c-ccCchhHHHHHHHHHHHH-
Q 020873          171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-F-VLPSFYSFLLMLVLSILA-  247 (320)
Q Consensus       171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~gi~~-  247 (320)
                      +.+..|+.++++++++||.+.+..||..+ .++ .....+....+.....+.....+. . ..++...|..+.+.++++ 
T Consensus       146 ~~~~~G~l~~l~a~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s  223 (292)
T PRK11272        146 SGNPWGAILILIASASWAFGSVWSSRLPL-PVG-MMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGS  223 (292)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhcCC-Ccc-hHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHH
Confidence            22457999999999999999999999653 333 334445555555554444333332 2 224667888899999886 


Q ss_pred             HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCc
Q 020873          248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE  313 (320)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~  313 (320)
                      .+++.+|++++|+.++++++.+.++||+++++++++++||+++..+++|+.+++.|+++..+++++
T Consensus       224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~  289 (292)
T PRK11272        224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL  289 (292)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999999999999999999999999998876664

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=5.7e-33  Score=245.79  Aligned_cols=276  Identities=16%  Similarity=0.175  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHH-HHHHHHH
Q 020873           12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSF   90 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   90 (320)
                      ..++.++++++||.+++++|... ++.||.++.++|+.++++.+.++..++++       .++.....++.. ...+.++
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~   76 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVARPKV-------PLNLLLGYGLTISFGQFAFL   76 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHHHHHHHH
Confidence            34668899999999999999987 78999999999999987766554422211       123333344433 3555677


Q ss_pred             HHHHhc-CCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccccc
Q 020873           91 VYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR  169 (320)
Q Consensus        91 ~~a~~~-~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (320)
                      +.+.++ .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++..                   .
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-------------------~  137 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN-------------------G  137 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC-------------------C
Confidence            889998 58899999999999999999999999999999999999999999998755311                   0


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchh--HHHHHHHHHHHHHHHHHhhhcCC-------cccCchhHHHHH
Q 020873          170 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPL--VTVFSFGILASPAAGICLFFFEE-------FVLPSFYSFLLM  240 (320)
Q Consensus       170 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l  240 (320)
                      .+.+..|+.+++.++++|+.|.+..|+..++.+++.  ....+....+.+.........++       +...+...|..+
T Consensus       138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  217 (299)
T PRK11453        138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSL  217 (299)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHH
Confidence            123457999999999999999999999654333222  22333343433322222222221       123466789999


Q ss_pred             HHHHHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873          241 LVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  314 (320)
Q Consensus       241 ~~~gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~  314 (320)
                      ++.++++ .++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+++..+.++.|
T Consensus       218 ~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~~  292 (299)
T PRK11453        218 MYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRWR  292 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhhh
Confidence            9999886 8999999999999999999999999999999999999999999999999999999998877655433

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=100.00  E-value=1.3e-32  Score=243.13  Aligned_cols=274  Identities=14%  Similarity=0.088  Sum_probs=208.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-----cCCchhHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-----FGPMHARNLLVLRAL   81 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~   81 (320)
                      +++.+|..++++++++||.++++.|..  +++||.++.++|+.++.+++.++...+++.+     .++++.+.....+++
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            456799999999999999999999974  5799999999999999887777655443211     112233334456677


Q ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873           82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG  161 (320)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  161 (320)
                      ..+.++.++++|++++++++++++.++.|+++.+++++++|||++++++.|++++++|+.++..++.             
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------------  148 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------------  148 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence            7788999999999999999999999999999999999999999999999999999999999875421             


Q ss_pred             ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCC-chhHHHHHHHHHHHHHHHHHhhhcCCccc--Cch-hHH
Q 020873          162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFEEFVL--PSF-YSF  237 (320)
Q Consensus       162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~  237 (320)
                               +..    .+++.++++||.|.+..|+..++.. +......+....+......  ....+...  .++ ..+
T Consensus       149 ---------~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  213 (296)
T PRK15430        149 ---------SLP----IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA--IADSSTSHMGQNPMSLN  213 (296)
T ss_pred             ---------Ccc----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH--HccCCcccccCCcHHHH
Confidence                     111    4578899999999999999643211 1112222233233222111  11111111  112 223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          238 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       238 ~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      ..+...|+.+.+++.+|++++++.++++++++.+++|+++.+++++++||+++..+++|+++++.++.+...+
T Consensus       214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455566667899999999999999999999999999999999999999999999999999998887776543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=100.00  E-value=4.8e-32  Score=239.09  Aligned_cols=277  Identities=13%  Similarity=0.049  Sum_probs=219.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL   87 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (320)
                      ++.+|+.++++++++|+.++.+.|+.. ++.||.++.++|++++.+++.++..+++++  .+++.++..+..++.....+
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~   85 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMN   85 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999988 789999999999999998888765443322  23455566667777778888


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccc
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN  167 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~  167 (320)
                      .+++++++++|++.++++.++.|+++.+++    +||+++  ..++.++++|+.++..++.+.                 
T Consensus        86 ~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~-----------------  142 (293)
T PRK10532         86 YLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDV-----------------  142 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCc-----------------
Confidence            899999999999999999999999998776    366554  455678899999887543211                 


Q ss_pred             ccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH
Q 020873          168 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA  247 (320)
Q Consensus       168 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~  247 (320)
                        ++.+..|+++++.++++||.|.+..||..++ .++.... +....+.+...+.....++....+...|..+++.|+++
T Consensus       143 --~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~  218 (293)
T PRK10532        143 --SHVDLTGAALALGAGACWAIYILSGQRAGAE-HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILS  218 (293)
T ss_pred             --ccCChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHH
Confidence              1224579999999999999999999997654 3444443 34444444444433333322223556676777889886


Q ss_pred             -HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873          248 -FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  314 (320)
Q Consensus       248 -~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~  314 (320)
                       .++|.+|++++++.++++++.+.++||+++.+++++++||+++..+++|+.+++.|++...++++++
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~  286 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE  286 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence             9999999999999999999999999999999999999999999999999999999999988776554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=100.00  E-value=5.8e-32  Score=235.07  Aligned_cols=257  Identities=21%  Similarity=0.233  Sum_probs=211.3

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 020873           23 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA  102 (320)
Q Consensus        23 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a  102 (320)
                      ||.+++..|...+++.|+.+..+.|+..+.+++.++..++    +++++..+....+++...+++.+++.|+++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~   76 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA   76 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence            8899999999876678999999999999888887765544    223344556666667778999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHH
Q 020873          103 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF  182 (320)
Q Consensus       103 ~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~  182 (320)
                      +++.++.|+++.+++++++|||+++++++|+.++++|+.++..++.                     .+.+..|+.+++.
T Consensus        77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~---------------------~~~~~~G~~~~l~  135 (260)
T TIGR00950        77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN---------------------LSINPAGLLLGLG  135 (260)
T ss_pred             HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc---------------------ccccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875431                     1235689999999


Q ss_pred             HHHHhHHHHHHhhhccCCCCc-hhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-HHHHHHHHHhccc
Q 020873          183 SSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQL  260 (320)
Q Consensus       183 a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~~~~~~~~a~~~  260 (320)
                      ++++|+.+.+..|+..++.++ +.....+....+.+...+.....++....+..+|..+.+.++++ .+++.+|++++|+
T Consensus       136 a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  215 (260)
T TIGR00950       136 SGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL  215 (260)
T ss_pred             HHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999997643222 22333344556665555444444433344667788888888876 8999999999999


Q ss_pred             cccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhh
Q 020873          261 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV  304 (320)
Q Consensus       261 ~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~  304 (320)
                      .++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+
T Consensus       216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999886

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.97  E-value=1.1e-28  Score=216.62  Aligned_cols=270  Identities=14%  Similarity=0.080  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh--CCC-CcCCchhHHHHHHHHHHHHHHHHH
Q 020873           13 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQP-IFGPMHARNLLVLRALVGFLSLFS   89 (320)
Q Consensus        13 ~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~   89 (320)
                      ..+.++++++|+..+...|... ++.++.  .+++.....+.+.++...+  ++. +..+++.+.....+++....++.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHA-DKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999765 333443  4777777777777766543  222 223345566777888888899999


Q ss_pred             HHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccccc
Q 020873           90 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR  169 (320)
Q Consensus        90 ~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (320)
                      +++|+++.++++++++.++.|+++.+++++++|||+++++++|+.+++.|+.++..++..                    
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~--------------------  139 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA--------------------  139 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc--------------------
Confidence            999999999999999999999999999999999999999999999999999988755311                    


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHH---HHHHHH-HHHHHHHhhhcCCcccCchhHHHHHHHHH-
Q 020873          170 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF---SFGILA-SPAAGICLFFFEEFVLPSFYSFLLMLVLS-  244 (320)
Q Consensus       170 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-  244 (320)
                       ..+..|+.+++.++++|+.|.+..|+..++.++......   ...... ...........+....++...+....+.+ 
T Consensus       140 -~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (281)
T TIGR03340       140 -QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGG  218 (281)
T ss_pred             -ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence             123357788999999999999999885432221111111   111111 11111111111111112223333444444 


Q ss_pred             HHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873          245 ILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  306 (320)
Q Consensus       245 i~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~  306 (320)
                      +.+..+|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+
T Consensus       219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            55699999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=99.97  E-value=1.2e-28  Score=213.63  Aligned_cols=243  Identities=15%  Similarity=0.112  Sum_probs=186.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC------C--cCCchhHHHHHHHHHH
Q 020873           11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP------I--FGPMHARNLLVLRALV   82 (320)
Q Consensus        11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~------~--~~~~~~~~~~~~~~~~   82 (320)
                      ||+.++++++++||.++++.|. . +++||.++.++|++++.+++.++...+++.      .  ..+++.+.....+++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-L-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-h-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            6899999999999999999998 3 579999999999999998877665332211      1  1122234456778888


Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCc
Q 020873           83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE  162 (320)
Q Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~  162 (320)
                      .+.++.++++|++++++++++++.++.|+++.+++++++|||+++++++++.++++|+.++..++.              
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~--------------  145 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG--------------  145 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC--------------
Confidence            889999999999999999999999999999999999999999999999999999999998865421              


Q ss_pred             cccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc--cc-CchhHHHH
Q 020873          163 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VL-PSFYSFLL  239 (320)
Q Consensus       163 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~  239 (320)
                              +..    .+++.++++||.|.+..|+..+ +++. ..... .....+.........+..  .. +...+|.+
T Consensus       146 --------~~~----~~~l~aa~~~a~~~i~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (256)
T TIGR00688       146 --------SLP----WEALVLAFSFTAYGLIRKALKN-TDLA-GFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLL  210 (256)
T ss_pred             --------Cch----HHHHHHHHHHHHHHHHHhhcCC-CCcc-hHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHH
Confidence                    111    3578899999999999999653 2222 22111 112222222111111111  11 22347888


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHH
Q 020873          240 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGL  284 (320)
Q Consensus       240 l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~  284 (320)
                      ++..|+++.++|.++++++|+.++++++++.+++|+++.+++++.
T Consensus       211 l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       211 LVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            888898889999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=1.8e-28  Score=217.54  Aligned_cols=271  Identities=13%  Similarity=0.039  Sum_probs=208.9

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh-hCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 020873           25 FMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT  103 (320)
Q Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~  103 (320)
                      ...++.|++.++-.+|..+++.|+.++.+.+.+.... .++++..++++++.+...|++.+.+..+.+.++++++++.++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~   95 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH   95 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            3446789888333679999999999988776555221 122233456677888888888888999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHH
Q 020873          104 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFS  183 (320)
Q Consensus       104 ~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a  183 (320)
                      ++.++.|+++.+++++++|||++++++.|++++++|+.+....+                      .+.+..|+++++++
T Consensus        96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~----------------------~~~~~~G~~~~l~a  153 (302)
T TIGR00817        96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE----------------------LSFNWAGFLSAMIS  153 (302)
T ss_pred             HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc----------------------ccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999998764221                      12346799999999


Q ss_pred             HHHhHHHHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHhhhcCCccc-C-ch----------hHHHHHHHHHHHH-HH
Q 020873          184 SITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVL-P-SF----------YSFLLMLVLSILA-FF  249 (320)
Q Consensus       184 ~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----------~~~~~l~~~gi~~-~~  249 (320)
                      +++|+++.+..||..++ +.++.....++...+.+...+.....++... + +.          ..+...+..+... ..
T Consensus       154 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (302)
T TIGR00817       154 NITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF  233 (302)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence            99999999999997541 3566777888887777776665554433211 1 00          0111122222222 33


Q ss_pred             HHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCccccc
Q 020873          250 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN  317 (320)
Q Consensus       250 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~~~  317 (320)
                      .+.++++++++.++++.+...+++|+++++++++++||+++..+++|+++++.|+.+..+.|++|++.
T Consensus       234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            34567789999999999999999999999999999999999999999999999999998877666543

specificities overlap.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.97  E-value=2e-31  Score=218.46  Aligned_cols=292  Identities=22%  Similarity=0.359  Sum_probs=244.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL   87 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (320)
                      ...+|..+..++ ..+....++.+...  +.+|.+..-.|++...+.-.+....++.....++..+++++++|+.++.+.
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgv  111 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGV  111 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHH
Confidence            346788888888 55555555555543  789999999998888888777776666655566666778899999999999


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccc
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN  167 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~  167 (320)
                      ...|||++|.+.++|+++.+++|.++.+++|.++|||.++.+.++..+.+.||+++.+|.+-.+++.       ++++++
T Consensus       112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t-------~g~~~s  184 (346)
T KOG4510|consen  112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTT-------EGEDSS  184 (346)
T ss_pred             HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCc-------cccccc
Confidence            9999999999999999999999999999999999999999999999999999999999987543311       111111


Q ss_pred             ccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC-chhHHHHHHHHHHH
Q 020873          168 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSIL  246 (320)
Q Consensus       168 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~  246 (320)
                      + -+.+.+|...++.+++..|--+++.|++.+ +.|......|+.+.+.+...+.....+.+..| ...+|.....+|+.
T Consensus       185 ~-~~~~~~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvf  262 (346)
T KOG4510|consen  185 Q-VEYDIPGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVF  262 (346)
T ss_pred             c-ccccCCchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhh
Confidence            1 244567888999999998888999999765 56677777888888888887766666677777 67889999999999


Q ss_pred             HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          247 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      +++++.+...++++..+.++++..+.+.+++.+++.++++|.||++.++|+++++.+.++...+|
T Consensus       263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988876544

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=3.8e-26  Score=205.74  Aligned_cols=279  Identities=11%  Similarity=0.088  Sum_probs=212.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHh--hCCCCcC-CchhHHHHHHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRR--SGQPIFG-PMHARNLLVLRALVGF   84 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~   84 (320)
                      +.+-..+.+....+=.......|.+. ++.| |..++.+|++++.++.......  +++++.. +++.++.++..++++.
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            44555555555555566677889887 7789 9999999999998766544332  2112121 3446677888888888


Q ss_pred             HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccc
Q 020873           85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAI  164 (320)
Q Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      ..+...+.|+++++++.+.++..+.|+++++++++++|||++++++.++++++.|+.+....+.                
T Consensus       126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~----------------  189 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL----------------  189 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc----------------
Confidence            7777778999999999999999999999999999999999999999999999999999874331                


Q ss_pred             cccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCC------CchhHHHHHHHHHHHHHHHHHhhhcCCcc--------
Q 020873          165 SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS------DQPLVTVFSFGILASPAAGICLFFFEEFV--------  230 (320)
Q Consensus       165 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  230 (320)
                            +.+..|+++++++++++|++++..|+..++.      .++.....+....+.++..+.....+...        
T Consensus       190 ------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~  263 (350)
T PTZ00343        190 ------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNY  263 (350)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence                  2357899999999999999999999976532      22333344445666666655544333211        


Q ss_pred             --cCchhHHHHHHHHHHHHHHHHHHHH----HhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhh
Q 020873          231 --LPSFYSFLLMLVLSILAFFAEVLLA----RGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV  304 (320)
Q Consensus       231 --~~~~~~~~~l~~~gi~~~~~~~~~~----~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~  304 (320)
                        ..+...+..+....+.+.+.+.+++    +++++.++...+...+++|+++++++++++||+++..+++|+.+++.|+
T Consensus       264 ~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv  343 (350)
T PTZ00343        264 TANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGA  343 (350)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHH
Confidence              0011112233334444578888887    4999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhc
Q 020873          305 FYTMYI  310 (320)
Q Consensus       305 ~~~~~~  310 (320)
                      +++++.
T Consensus       344 ~lYs~~  349 (350)
T PTZ00343        344 LLYSLF  349 (350)
T ss_pred             HHHhhc
Confidence            988764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.96  E-value=1.2e-25  Score=198.21  Aligned_cols=282  Identities=19%  Similarity=0.173  Sum_probs=221.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CCcCCchhHHHHHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFL   85 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   85 (320)
                      ++...+..+.++..+.|+......|...+...++....+.|...+.+...+...+++. .....++.++..+.+++....
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence            3456788889999999999999999987333777888888999988884444443321 222222234667777788889


Q ss_pred             HHHHHHHHHhcCCccchhhhhhhhHHHHHHHHH-HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccc
Q 020873           86 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAI  164 (320)
Q Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~-~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  164 (320)
                      .+.+++.++++++++.+.++.++.|+++.++++ +++|||++++++.++.+++.|+.++..++.....            
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~------------  150 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI------------  150 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh------------
Confidence            999999999999999999999999999999997 6679999999999999999999999988643210            


Q ss_pred             cccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHH-HHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHH
Q 020873          165 SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF-SFGILASPAAGICLFFFEEFVLPSFYSFLLMLVL  243 (320)
Q Consensus       165 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  243 (320)
                            . +..|+.+++.+++++|.+.+..|+..  ..++..... +... ............+.....+...|..+.+.
T Consensus       151 ------~-~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (292)
T COG0697         151 ------L-SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLL-LALLLLLLFFLSGFGAPILSRAWLLLLYL  220 (292)
T ss_pred             ------H-HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHH-HHHHHHHHHHhccccccCCHHHHHHHHHH
Confidence                  1 57999999999999999999999865  333434333 2222 11111111111111123456788889999


Q ss_pred             HHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          244 SILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       244 gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      |+++ ..++.++++++++.++.+++.+.+++|+++.++++++++|+++..+++|+.+++.|+.+...+
T Consensus       221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            9887 589999999999999999999999999999999999999999999999999999999888776

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.94  E-value=2.2e-24  Score=180.73  Aligned_cols=275  Identities=19%  Similarity=0.181  Sum_probs=226.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC-----CcCCchhHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----IFGPMHARNLLVLRAL   81 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~   81 (320)
                      ++..+|+++.+.+.++||..+.+.|..  ++.|+.++...|...+.+++.......|+.     ..++++.+..+.+.++
T Consensus         3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~   80 (293)
T COG2962           3 KDSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL   80 (293)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence            456799999999999999999999985  699999999999999998877665432221     1234455567778888


Q ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873           82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG  161 (320)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  161 (320)
                      ....++..|.+|.++...-++|.-++..|++.++++++++|||+++.|++++.++.+||.......+             
T Consensus        81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------------  147 (293)
T COG2962          81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------------  147 (293)
T ss_pred             HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence            8889999999999999999999999999999999999999999999999999999999998876542             


Q ss_pred             ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcc---c-CchhHH
Q 020873          162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV---L-PSFYSF  237 (320)
Q Consensus       162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~  237 (320)
                               +.++.    ++.-+++|++|....|+.   +.+..+.....++.-.+...+.....++..   . .+...+
T Consensus       148 ---------~lpwv----al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~  211 (293)
T COG2962         148 ---------SLPWV----ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLW  211 (293)
T ss_pred             ---------CCcHH----HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHH
Confidence                     23433    355567999999988885   334555555566665555555444333222   1 245678


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          238 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       238 ~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      .++...|+.+.++..++..+-|+.+-+..+.++|.+|..-.+++++++||+++..++...+.|-.|..+...+.-
T Consensus       212 ~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l  286 (293)
T COG2962         212 LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL  286 (293)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999999999999999999999999999999999999999999877643

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.93  E-value=1.1e-23  Score=185.26  Aligned_cols=292  Identities=13%  Similarity=0.066  Sum_probs=226.2

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhC-CCC--cCCchhHHHHHHHHH
Q 020873            6 NGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSG-QPI--FGPMHARNLLVLRAL   81 (320)
Q Consensus         6 ~~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~-~~~--~~~~~~~~~~~~~~~   81 (320)
                      .++..+++++.-..+++-..++..+....+++.+ |....+..+..-.++..+....|+ ++.  ...++.++..++.++
T Consensus         8 ~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~   87 (334)
T PF06027_consen    8 TRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLAL   87 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHH
Confidence            3445677788888888888888888887755555 666667777666666555544332 211  112233444555589


Q ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873           82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG  161 (320)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  161 (320)
                      +.+.++.+...|++|++.+.+.++.++.-+++++++++++|||.++.+++|+++++.|+.++...|....+         
T Consensus        88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~---------  158 (334)
T PF06027_consen   88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS---------  158 (334)
T ss_pred             HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc---------
Confidence            99999999999999999999999999999999999999999999999999999999999999888754311         


Q ss_pred             ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCC--ccc--CchhHH
Q 020873          162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE--FVL--PSFYSF  237 (320)
Q Consensus       162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~  237 (320)
                          .+..+.+...|+++++.++++||++++..++..++ .+........++.+.++..+.....+.  ...  .+.+.+
T Consensus       159 ----~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~  233 (334)
T PF06027_consen  159 ----DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVI  233 (334)
T ss_pred             ----cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhH
Confidence                11234567899999999999999999999998764 445566667777777777665554432  211  134445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          238 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       238 ~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      .+++..+++.+.-|.+.-..++..+|+..++-..+..+++++++++++|+++++..++|.++|+.|.++....+
T Consensus       234 ~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  234 GLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            55555556567888888999999999999999999999999999999999999999999999999999887644

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.93  E-value=7.9e-24  Score=185.98  Aligned_cols=273  Identities=14%  Similarity=0.064  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Q 020873           12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV   91 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (320)
                      +++++++++++||...+..|...  +.++.+..  |..++.+++..+....++++.+.++.+..-+++|+....++.+++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~   77 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF   77 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence            57889999999999999999853  77787775  777777766655443333323335555667777888889999999


Q ss_pred             HHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHHH----HHHHHHHHHHHHHhhccccccccccCCccCCCccccc
Q 020873           92 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL  166 (320)
Q Consensus        92 ~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      .|.++++.+.+.++.+ +.|++..+.+.+++|||.++++    .+|++++++|+.++...+.++             .++
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~-------------~~~  144 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS-------------AGI  144 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc-------------ccc
Confidence            9999999999999988 8888999999999999999999    999999999999886553211             000


Q ss_pred             cccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHH----HHHHHHHHHhhhcCCcccCchhHHHHHHH
Q 020873          167 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGI----LASPAAGICLFFFEEFVLPSFYSFLLMLV  242 (320)
Q Consensus       167 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  242 (320)
                      +.. .+...|+.+++.++++|+.|.+..|+..   .++....+.+..    .+.++....   ... .+...+.+.....
T Consensus       145 ~~~-~~~~~Gi~~~l~sg~~y~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~  216 (290)
T TIGR00776       145 KSE-FNFKKGILLLLMSTIGYLVYVVVAKAFG---VDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPLKKYAILLNIL  216 (290)
T ss_pred             ccc-cchhhHHHHHHHHHHHHHHHHHHHHHcC---CCcceehhHHHHHHHHHHHHHHHHH---hcc-cchHHHHHHHHHH
Confidence            000 1235799999999999999999999852   344444333322    222222211   111 1123333333444


Q ss_pred             HHHHHHHHHHHHHHhcc-ccccccccchhhhHHHHHHHHHHHHhccCCchhhh----hhhHHhhhhhhhhhh
Q 020873          243 LSILAFFAEVLLARGLQ-LEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMY  309 (320)
Q Consensus       243 ~gi~~~~~~~~~~~a~~-~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~----~G~~lii~g~~~~~~  309 (320)
                      .|++..+++.+|+.+.+ +.++++++.+.+.||+.+.++++++++|+.+..|+    +|+++++.|+.+...
T Consensus       217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            88888999999999999 99999999999999999999999999999999999    999999999987754

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.92  E-value=3.9e-22  Score=162.94  Aligned_cols=274  Identities=13%  Similarity=0.060  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Q 020873           12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV   91 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (320)
                      .+...+.+.+.--....+.|... +.+++...+.+|..++.++++.+.+-.++  +..++.+.....-|......|.+||
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr~--r~~~~~~~~~~~yGvsLg~MNl~FY   89 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWRR--RLSKPQRLALLAYGVSLGGMNLLFY   89 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHHh--ccChhhhHHHHHHHHHHHHHHHHHH
Confidence            47778888888888888999988 99999999999999999998887653332  2345667888888999999999999


Q ss_pred             HHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCc
Q 020873           92 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGS  171 (320)
Q Consensus        92 ~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (320)
                      .+++++|.+.+..+.++.|+...+++.    +  +.+..+.+.+++.|+.++.-.+.+                   ...
T Consensus        90 ~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~-------------------~~~  144 (292)
T COG5006          90 LSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQS-------------------VWS  144 (292)
T ss_pred             HHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCC-------------------cCc
Confidence            999999999999999999997766543    2  345666778889999888644422                   125


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-HHH
Q 020873          172 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFA  250 (320)
Q Consensus       172 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~~  250 (320)
                      .|..|..+++.++.||+.|.+..||..+ .++....+...+.++.++..++..........++.....-+..|+++ .+.
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccc
Confidence            6789999999999999999999999764 45555555666666666655554444444455677777778889997 999


Q ss_pred             HHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873          251 EVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  314 (320)
Q Consensus       251 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~  314 (320)
                      |.+-..++++.+....+.+..+||.++.+.+++++||.+|..||.|...++.+..-.....+|+
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            9999999999999999999999999999999999999999999999999999988766654443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.87  E-value=2.8e-19  Score=158.49  Aligned_cols=277  Identities=15%  Similarity=0.153  Sum_probs=220.4

Q ss_pred             HHHHHHHhh-cCCCC--HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 020873           26 MQVISDVFM-VQSIP--LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA  102 (320)
Q Consensus        26 ~~~~~k~~~-~~~~~--~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a  102 (320)
                      +....+... .++..  |..+++.++....+...+.....+++ ..++..++.....++...++..+-+.|++++|...-
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~   93 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ   93 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence            334555443 23344  88999999998888777665555422 233444566777789999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHH
Q 020873          103 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF  182 (320)
Q Consensus       103 ~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~  182 (320)
                      .+..+..|+.+++++.+++|+|.+++++.++++..+|+.+....+....            ++.+........|+.+.+.
T Consensus        94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~------------~~~~~~~~~~~~G~~ll~~  161 (303)
T PF08449_consen   94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS------------SSSNSSSFSSALGIILLLL  161 (303)
T ss_pred             HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc------------cccccccccchhHHHHHHH
Confidence            9999999999999999999999999999999999999999887664321            1111111222349999999


Q ss_pred             HHHHhHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhh--cCCcc------cCchhHHHHHHHHHHHHHHHHHH
Q 020873          183 SSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFF--FEEFV------LPSFYSFLLMLVLSILAFFAEVL  253 (320)
Q Consensus       183 a~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~l~~~gi~~~~~~~~  253 (320)
                      +.++.++..+..+|..+ .+.++...+++....+.+...+....  .++..      ..+++.+..++...+++..++..
T Consensus       162 sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~  241 (303)
T PF08449_consen  162 SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFF  241 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988664 35566788888888888887766555  32222      22455677778888888999999


Q ss_pred             HHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCccc
Q 020873          254 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE  315 (320)
Q Consensus       254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~  315 (320)
                      .+...++.++...+.+..+.-+++++++.++++++++..+++|..+++.|..+..+.++||+
T Consensus       242 i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  242 IFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999999999999999999999999988877664

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.81  E-value=3.5e-19  Score=153.50  Aligned_cols=228  Identities=18%  Similarity=0.208  Sum_probs=188.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccc
Q 020873           72 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ  151 (320)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~  151 (320)
                      ..+..+..+..-++++..+..|+.+++++...++.+++-+|+..++.++.+||++..+.+++.+.+.|++++...+..+ 
T Consensus       158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-  236 (416)
T KOG2765|consen  158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-
Confidence            3445666677778999999999999999999999999999999999999999999999999999999999998776432 


Q ss_pred             cccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHh--------
Q 020873          152 AVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICL--------  223 (320)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  223 (320)
                                   +.+........|.++++++++.||.|.++.||...+.+....+...++.+|..-+.+..        
T Consensus       237 -------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~  303 (416)
T KOG2765|consen  237 -------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDF  303 (416)
T ss_pred             -------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence                         11223456789999999999999999999998665443455555555555544333222        


Q ss_pred             hhcCCcccCchhHHHHHHHHHHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhh
Q 020873          224 FFFEEFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILV  302 (320)
Q Consensus       224 ~~~~~~~~~~~~~~~~l~~~gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~  302 (320)
                      ...+.+..|+..+...++..++++ +++-++|.+|+-..++..+++-..++...+++.+.++-+.++++.+++|.+.|+.
T Consensus       304 ~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv  383 (416)
T KOG2765|consen  304 FGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFV  383 (416)
T ss_pred             hccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            123567778888888888888776 9999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCCc
Q 020873          303 SVFYTMYIGPE  313 (320)
Q Consensus       303 g~~~~~~~~~~  313 (320)
                      |.++.+...+.
T Consensus       384 ~Fv~vn~~~~~  394 (416)
T KOG2765|consen  384 GFVIVNISSEN  394 (416)
T ss_pred             HHhheeccccc
Confidence            99998876443

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.78  E-value=4.9e-18  Score=124.56  Aligned_cols=133  Identities=19%  Similarity=0.254  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC---CchhHHHHHHHHHHHHHHH
Q 020873           11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSL   87 (320)
Q Consensus        11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   87 (320)
                      ...+++++++++++..+++.|... ++.||...++.|......++..+....++.+..   .++.+..+.++|+.+..++
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence            457889999999999999999988 999999999999999999999888887765544   6677888999999999999


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      .+||+|+|..+++.+.++..++|.++.+++++++|||+|..+++|+.+..+|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999999999999998874

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.67  E-value=1.9e-16  Score=137.91  Aligned_cols=268  Identities=13%  Similarity=0.071  Sum_probs=211.3

Q ss_pred             HHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 020873           28 VISDVFMV--QSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT  103 (320)
Q Consensus        28 ~~~k~~~~--~~~~~~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~  103 (320)
                      ...|+..+  +.--|..++..+...+.+........+-  .++..++..++..+..++...++..+-..|+++.+++.+.
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q  113 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQ  113 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHH
Confidence            34577664  2234778888877666666555433332  2222345667788888999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHH
Q 020873          104 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFS  183 (320)
Q Consensus       104 ~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a  183 (320)
                      .+..++|++++++++++.+|+.++..+..++....||.+....+.                      +.++.|...++.+
T Consensus       114 ~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----------------------~fn~~G~i~a~~s  171 (316)
T KOG1441|consen  114 TIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----------------------SFNLFGFISAMIS  171 (316)
T ss_pred             HHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc----------------------cccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999876542                      4688999999999


Q ss_pred             HHHhHHHHHHhhhccC---CCCchhHHHHHHHHHHHHHHH-HHhhhcCCccc------CchhHHHHHHHHHHHHHHHHHH
Q 020873          184 SITGGISYCLIKAGAN---ASDQPLVTVFSFGILASPAAG-ICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVL  253 (320)
Q Consensus       184 ~~~~a~~~v~~k~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~  253 (320)
                      .+..+..+++.|++.+   .+.++.....+..-.+...+. +.....++...      +.........+..++...-+..
T Consensus       172 ~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls  251 (316)
T KOG1441|consen  172 NLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLS  251 (316)
T ss_pred             HHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999763   345677777777777777666 43333333221      2112233334445777888899


Q ss_pred             HHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCccccc
Q 020873          254 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN  317 (320)
Q Consensus       254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~~~  317 (320)
                      -+..+.+.+|...+..+.+.-++.+..++++++|+.|+.+..|+.+.+.|+.++.+.+.+++++
T Consensus       252 ~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~  315 (316)
T KOG1441|consen  252 AFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG  315 (316)
T ss_pred             HHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999988776654

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.66  E-value=1.4e-15  Score=111.72  Aligned_cols=133  Identities=20%  Similarity=0.222  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC---chhHHHHHHHHHHHHHHHHH
Q 020873          176 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEV  252 (320)
Q Consensus       176 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~  252 (320)
                      ...+++++++.+++..++.|--.+ +.+|...+.....+...+........+++..+   +++.|.++...|+.+..+.+
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            568899999999999999998665 45566666667777777766666777777766   88999999999999999999


Q ss_pred             HHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          253 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       253 ~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      +|++|+|..+++++.++..+.|+++++++++++||+++..+++|+.+|++|.++...
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999887643

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.66  E-value=5.8e-15  Score=119.79  Aligned_cols=293  Identities=14%  Similarity=0.153  Sum_probs=215.0

Q ss_pred             cccCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCC--C---------HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchh
Q 020873            4 VWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSI--P---------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHA   72 (320)
Q Consensus         4 ~~~~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~--~---------~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~   72 (320)
                      +|-+++.+-.+++.--.+|+-..++..........  +         ...+++.++..-.++.=.....|++...++. .
T Consensus         6 s~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t-~   84 (337)
T KOG1580|consen    6 SWLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNT-P   84 (337)
T ss_pred             cccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCC-c
Confidence            45555555555544444555555555554431111  1         2345555555555544333333433322222 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccccc
Q 020873           73 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA  152 (320)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~  152 (320)
                      -+.....++..-+++..-..|+|+.|-....+-.+.-|+-+++++.++.|++.++++...++++++||.+..+.+....+
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g  164 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG  164 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence            34556677778889999999999999999999999999999999999999999999999999999999999888543221


Q ss_pred             ccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCC-cc
Q 020873          153 VSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEE-FV  230 (320)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  230 (320)
                                     ..++....|.++.+++-..-++....+.+... .......++++..+.+.+.+....++.++ |+
T Consensus       165 ---------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElwe  229 (337)
T KOG1580|consen  165 ---------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWE  229 (337)
T ss_pred             ---------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHH
Confidence                           12345568999999988887777776655332 33455677788888888777665554432 22


Q ss_pred             -----cCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhh
Q 020873          231 -----LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVF  305 (320)
Q Consensus       231 -----~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~  305 (320)
                           ...+..|.-+..+++++.+++++.+.-....+|-.-+.+....-.|+++.++++++.+++..||+|.+++..+..
T Consensus       230 F~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~  309 (337)
T KOG1580|consen  230 FFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALT  309 (337)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Confidence                 345778888999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhhcCC
Q 020873          306 YTMYIGP  312 (320)
Q Consensus       306 ~~~~~~~  312 (320)
                      .-....+
T Consensus       310 ~D~~~GK  316 (337)
T KOG1580|consen  310 ADVVDGK  316 (337)
T ss_pred             hHhhcCC
Confidence            7765544

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=2.3e-13  Score=116.33  Aligned_cols=291  Identities=13%  Similarity=0.079  Sum_probs=225.3

Q ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH--HHHHHHHHHHHHHHHHhhC-CCCcCCchhHHHHHHHHH
Q 020873            5 WNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETV--FMRCTVTLILSYLWLRRSG-QPIFGPMHARNLLVLRAL   81 (320)
Q Consensus         5 ~~~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~--~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (320)
                      +++.+.+.+..++..+++-...-+..|.+....--|..+.  ..+.+.+.+.+...-+.+- +.+..+++..|.++...+
T Consensus         6 ~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~   85 (314)
T KOG1444|consen    6 GSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSL   85 (314)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHH
Confidence            4455556677777777777777888888872222233333  4777766665554332221 222233445566667777


Q ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873           82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG  161 (320)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~  161 (320)
                      ........-..+++++++....++.+.+|+++++....++|.|++...+.++....+|......++..            
T Consensus        86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s------------  153 (314)
T KOG1444|consen   86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS------------  153 (314)
T ss_pred             HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce------------
Confidence            77777777889999999999999999999999999999999999999999999999999988777643            


Q ss_pred             ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCCcc--------cC
Q 020873          162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFV--------LP  232 (320)
Q Consensus       162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  232 (320)
                                .+..|+.+++...++-+.+.+..||..+ .+.+....+++..+.+.+...+..+.++++.        ++
T Consensus       154 ----------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~  223 (314)
T KOG1444|consen  154 ----------FNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS  223 (314)
T ss_pred             ----------ecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc
Confidence                      3445999999999999999999998554 3345567788889998888888777776543        22


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          233 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       233 ~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      +...+..+...+++++.-.++-+++.+..+++..+.++..+-..+.+...++.+++.++...+|..+-+.|.+++.+.+.
T Consensus       224 ~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~  303 (314)
T KOG1444|consen  224 DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF  303 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence            34557778888999988888888999999999999999888888888888888999999999999999999999988775


Q ss_pred             ccccc
Q 020873          313 EKEMN  317 (320)
Q Consensus       313 ~~~~~  317 (320)
                      +||+.
T Consensus       304 ~~k~~  308 (314)
T KOG1444|consen  304 RKKKQ  308 (314)
T ss_pred             hhccC
Confidence            55443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.59  E-value=4e-12  Score=110.30  Aligned_cols=288  Identities=13%  Similarity=0.114  Sum_probs=206.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHHHhhC----CCC-cC-------CchhHHH
Q 020873           11 SGLMCMALSSTIYFFMQVISDVFMVQS---IPLFETVFMRCTVTLILSYLWLRRSG----QPI-FG-------PMHARNL   75 (320)
Q Consensus        11 ~g~~~~~la~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~~~l~~~~~~~~----~~~-~~-------~~~~~~~   75 (320)
                      .-++.++...+.++...+..|+....+   ..|....+.--..-.+++.....++.    ++. +.       .++....
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            456667778888999999999876444   66788888877777777666655442    111 11       1111223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccC
Q 020873           76 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSG  155 (320)
Q Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  155 (320)
                      ..+=++..++.+.++|.++.+.+++...+..++--+.|++++.+++++|++++||.++.+.++|+.++-.+.....    
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~----  170 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT----  170 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC----
Confidence            3344567788888999999999999999999999999999999999999999999999999999999874432211    


Q ss_pred             CccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHhhhcCCccc---
Q 020873          156 GLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVL---  231 (320)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  231 (320)
                             +.......+..+.|....+.++.+.++..++..|..++ +.+.+.-.......|.++.++.....+....   
T Consensus       171 -------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~  243 (345)
T KOG2234|consen  171 -------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEY  243 (345)
T ss_pred             -------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence                   11112234567899999999999999999988886654 3444444555555666665554443322111   


Q ss_pred             -----CchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873          232 -----PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  306 (320)
Q Consensus       232 -----~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~  306 (320)
                           .+...|..++..    ..+=++...-+|+.+-..=.....+..+++.+.++.+++-+||....+|..+++.++.+
T Consensus       244 gff~G~s~~vw~vVl~~----a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l  319 (345)
T KOG2234|consen  244 GFFYGYSSIVWLVVLLN----AVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL  319 (345)
T ss_pred             CccccccHHHHHHHHHH----hccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence                 122233333333    44444555567888887778888889999999999999999999999999999999999


Q ss_pred             hhhcCCc
Q 020873          307 TMYIGPE  313 (320)
Q Consensus       307 ~~~~~~~  313 (320)
                      +...+.+
T Consensus       320 Y~~~P~~  326 (345)
T KOG2234|consen  320 YSLYPAR  326 (345)
T ss_pred             hhcCCcc
Confidence            8855443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.57  E-value=3.6e-13  Score=114.90  Aligned_cols=224  Identities=15%  Similarity=0.153  Sum_probs=161.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccc
Q 020873           71 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT  150 (320)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~  150 (320)
                      +....+.+=++...+.+.+.+.++++++++.-.++.++-.++|++++++++|+|++++||.++.+.+.|+.+...++...
T Consensus        15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            33445556678899999999999999999999999999999999999999999999999999999999999987665432


Q ss_pred             ccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCC-chhHHHHHHHHHHHHHHHHHhhhcCCc
Q 020873          151 QAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFEEF  229 (320)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (320)
                      .+.+     +++..+.+....+...|..+.+.++++.++..++.+|..|+++ +...........+.++..+..... ++
T Consensus        95 ~~~~-----~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~  168 (244)
T PF04142_consen   95 SDNS-----SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DG  168 (244)
T ss_pred             cccc-----cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cc
Confidence            1100     0000001112345689999999999999999999988766543 334444555555666555443332 22


Q ss_pred             ccC----chhHHHHHHHHHHH-HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHh
Q 020873          230 VLP----SFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI  300 (320)
Q Consensus       230 ~~~----~~~~~~~l~~~gi~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~li  300 (320)
                      ..+    -.+.|-...+.-++ ...+=++....+|+.+...=+.....+.+.+.+.++++++.+++....+|+.++
T Consensus       169 ~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  169 SAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             cccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            111    11222222222222 245555566678999998889999999999999999999999999999998753

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.56  E-value=3e-14  Score=109.33  Aligned_cols=122  Identities=21%  Similarity=0.294  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCchhHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 020873           21 TIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLV-LRALVGFLSLFSFVYSIQRL   97 (320)
Q Consensus        21 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~   97 (320)
                      ++||...+..|... ++.||.+..++|+..+.+ +.+.....+  +....+++.+.... .+.+....++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            47899999999987 779999999999999997 444433222  21223333344444 44444689999999999999


Q ss_pred             CccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           98 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        98 ~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      +++.++.+.++.|+++.+++++++|||+++++++|+.+++.|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.52  E-value=2.4e-15  Score=123.47  Aligned_cols=284  Identities=11%  Similarity=0.073  Sum_probs=213.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL   85 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (320)
                      ++..+|+.+.-+-.+|-......+.....++.+ |....|..+..-+++-.++...|++.   -+..|+..++.++..+-
T Consensus        14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~---~~~~~~hYilla~~DVE   90 (336)
T KOG2766|consen   14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY---IKAKWRHYILLAFVDVE   90 (336)
T ss_pred             hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH---HHHHHHHhhheeEEeec
Confidence            344566666555555555555555555445554 77888899888888888887766532   12234446677888888


Q ss_pred             HHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccc
Q 020873           86 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS  165 (320)
Q Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~  165 (320)
                      ++.+...|.||++...+..+.+-.-..+.+++|+++|.|-++.++.|+++++.|+++++.+|...++             
T Consensus        91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd-------------  157 (336)
T KOG2766|consen   91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD-------------  157 (336)
T ss_pred             ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccc-------------
Confidence            8888999999999999999999888888999999999999999999999999999999887753321             


Q ss_pred             ccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC--chhHHHHHHH-
Q 020873          166 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP--SFYSFLLMLV-  242 (320)
Q Consensus       166 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-  242 (320)
                       ...+.+...|+++.+.++.+||..++....+.+ +.+....+...++.|.++..+- ++.+..+..  +++ |....+ 
T Consensus       158 -~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~-~~i~~yl  233 (336)
T KOG2766|consen  158 -RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWD-SAIFLYL  233 (336)
T ss_pred             -ccCCCCCccCcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeeh-HHHHHHH
Confidence             122355678999999999999999999999875 4556677777788888888877 444433322  221 222222 


Q ss_pred             -HHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          243 -LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       243 -~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                       .+++-+.-|-+.-..+|..+++...+-..+.-.+++++  ..||-+.++...+....+..|.++...+++
T Consensus       234 ~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~  302 (336)
T KOG2766|consen  234 RFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK  302 (336)
T ss_pred             HHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence             33444666777777888899999999888999999988  678888999999999999999888765543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.51  E-value=1.2e-11  Score=105.28  Aligned_cols=248  Identities=13%  Similarity=0.070  Sum_probs=175.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhh-hhHHHHHHHH
Q 020873           39 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAA  117 (320)
Q Consensus        39 ~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~ll~  117 (320)
                      +|.+-..--..-+.++-......++.....+.+.+..-+++|++-.+++...+.|+++.+++.+.++.. .+-+.+.+.+
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g   90 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG   90 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence            455555444444444444443433322211235677788999999999999999999999999999965 6667789999


Q ss_pred             HHHhcCcCcHHHH----HHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHH
Q 020873          118 RIILREKLKIAEI----GGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL  193 (320)
Q Consensus       118 ~~~l~e~~~~~~~----~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~  193 (320)
                      .++++|.-+..++    +++++.++|+.+....+.++..              .....+...|+...+++.+.|..|.+.
T Consensus        91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~--------------~~~~~~~~kgi~~Ll~stigy~~Y~~~  156 (269)
T PF06800_consen   91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK--------------SSSKSNMKKGILALLISTIGYWIYSVI  156 (269)
T ss_pred             HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc--------------cccccchhhHHHHHHHHHHHHHHHHHH
Confidence            9999997776654    4888999999998877643211              111344567999999999999999999


Q ss_pred             hhhccCCCCchhHHHHHHHHHHHHHHH-HHhhhcCCcccCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhh
Q 020873          194 IKAGANASDQPLVTVFSFGILASPAAG-ICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYI  272 (320)
Q Consensus       194 ~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~  272 (320)
                      .|..   +.++....+-+. .+..+.. +..... +....+...|.. ...|++-.+++.+++.+.++.+.+..-.+..+
T Consensus       157 ~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~~-~~~~~~k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~  230 (269)
T PF06800_consen  157 PKAF---HVSGWSAFLPQA-IGMLIGAFIFNLFS-KKPFFEKKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQL  230 (269)
T ss_pred             HHhc---CCChhHhHHHHH-HHHHHHHHHHhhcc-cccccccchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhH
Confidence            8873   345555555443 3333332 222222 211223333333 45677778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchhh----hhhhHHhhhhhhh
Q 020873          273 EVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFY  306 (320)
Q Consensus       273 ~pv~~~~~~~l~~~e~~~~~~----~~G~~lii~g~~~  306 (320)
                      .++++.+.+.++++|+=+..+    .+|.++++.|.++
T Consensus       231 ~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  231 GVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999877654    5788888877654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.50  E-value=5.6e-12  Score=106.62  Aligned_cols=258  Identities=11%  Similarity=0.075  Sum_probs=206.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHH
Q 020873           39 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR  118 (320)
Q Consensus        39 ~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~  118 (320)
                      ++..+.+.+-+.+.++-...+..+++. ...++.++.....++....+..|-|.|++|++-..-.+-.+.--+-+++...
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~  128 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT  128 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence            567788888888887776666555544 3444556666777888899999999999999999888888877788889999


Q ss_pred             HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhcc
Q 020873          119 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA  198 (320)
Q Consensus       119 ~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~  198 (320)
                      ++.|+|.+..+.+...+.-.|+.+....+.+             ++..+..+++...|+.+....-..-++.+..++++-
T Consensus       129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s-------------~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf  195 (327)
T KOG1581|consen  129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNS-------------DSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF  195 (327)
T ss_pred             HHhcCccCcHHHHHHHHHHhheeeEEEecCC-------------CCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence            9999999999999999999999876654321             112223345678999999999998888888887765


Q ss_pred             CC-CCchhHHHHHHHHHHHHHHHHHhhhcCCcc------cCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhh
Q 020873          199 NA-SDQPLVTVFSFGILASPAAGICLFFFEEFV------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY  271 (320)
Q Consensus       199 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~  271 (320)
                      ++ ..++..++++..+.+.+.........+.+.      ..+++.+.-++....++.+++.+.++-+++.|+-.-+.++.
T Consensus       196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence            53 456778888888888877665433223222      23677888899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          272 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       272 ~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      +.-.++++++.+.++.+++..|+.|..+++.|+.+-...
T Consensus       276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~  314 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL  314 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence            999999999999999999999999999999988776543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.42  E-value=1e-11  Score=107.80  Aligned_cols=132  Identities=18%  Similarity=0.145  Sum_probs=108.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHH-HHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPL--FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGF   84 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   84 (320)
                      ...+|..++++++++|+......|... ++.++  .....+|+.++.+++.+.....++....+++.+. ....+.+...
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTA  203 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
Confidence            446899999999999999999999987 56664  4555578889888888876655443333333443 3444555567


Q ss_pred             HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Q 020873           85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGV  140 (320)
Q Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv  140 (320)
                      .++.++++++++.+++.++.+.++.|+++.+++++++|||++..++.|..+.+.|+
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999986

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.40  E-value=1.3e-12  Score=100.15  Aligned_cols=122  Identities=22%  Similarity=0.242  Sum_probs=102.8

Q ss_pred             HHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc--ccCchhHHHHHHHHHHHH-HHHHHHHHHhcccc
Q 020873          185 ITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VLPSFYSFLLMLVLSILA-FFAEVLLARGLQLE  261 (320)
Q Consensus       185 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~-~~~~~~~~~a~~~~  261 (320)
                      ++||.+.+..|+..++ .++....++....+.+ ..+........  ...+.+++......++++ ..++.++++++++.
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4789999999997764 6677888888878776 44444443332  455778888888888885 99999999999999


Q ss_pred             ccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873          262 KTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  308 (320)
Q Consensus       262 ~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~  308 (320)
                      ++++++.+.+++|+++.++++++++|+++..+++|+.+++.|+++..
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.37  E-value=6.8e-12  Score=94.54  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCc----CCchhHHHHHHHHHHH-HHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHH
Q 020873           45 FMRCTVTLILSYLWLRRSGQPIF----GPMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI  119 (320)
Q Consensus        45 ~~r~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~  119 (320)
                      .+|+..+.+++..+...+++...    .+++.+......++.. ..++.++++|.++.| +.++++.+++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            57999999888887666543211    1123334455555555 489999999999999 58889999999999999999


Q ss_pred             HhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 020873          120 ILREKLKIAEIGGLALSFFGVLFIFRRILT  149 (320)
Q Consensus       120 ~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~  149 (320)
                      ++|||++++++.++.++++|++++..++.+
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999999988743

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.36  E-value=1e-10  Score=99.07  Aligned_cols=246  Identities=15%  Similarity=0.111  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC------CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHH
Q 020873           40 LFETVFMRCTVTLILSYLWLRRSG------QPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA  113 (320)
Q Consensus        40 ~~~~~~~r~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~  113 (320)
                      |...+.++.+.-.++.....+.++      +....+++..++....++..+..-.+-.+++++++.+.-+...++.++|+
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI  124 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI  124 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence            677777776665555444333221      12233455667777889999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHH
Q 020873          114 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL  193 (320)
Q Consensus       114 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~  193 (320)
                      .+++.+|-=||+++.-..-+.++.+|+.+.++.+.                      +.+..|..+...+.++.++-...
T Consensus       125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT----------------------qf~i~Gf~lv~~aS~~sGlRW~~  182 (349)
T KOG1443|consen  125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST----------------------QFNIEGFFLVLAASLLSGLRWAF  182 (349)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc----------------------ceeehhHHHHHHHHHhhhhhHHH
Confidence            99999887799999999999999999999987752                      45678888888888887777776


Q ss_pred             hhhccCCC----CchhHHHHHHHHHHHHHHHHHhhhcCCcccC---------ch-hHHHHH---HHHHHHHHHHHHHHHH
Q 020873          194 IKAGANAS----DQPLVTVFSFGILASPAAGICLFFFEEFVLP---------SF-YSFLLM---LVLSILAFFAEVLLAR  256 (320)
Q Consensus       194 ~k~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~l---~~~gi~~~~~~~~~~~  256 (320)
                      .+++.+++    .+|..+.....-...+.+.+..+..|+.+..         +. ..+..+   ...|..++.--.+-+.
T Consensus       183 tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEfl  262 (349)
T KOG1443|consen  183 TQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFL  262 (349)
T ss_pred             HHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66655433    4677777766666555555555555543321         11 123333   3334444444455666


Q ss_pred             hccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhh
Q 020873          257 GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT  307 (320)
Q Consensus       257 a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~  307 (320)
                      .+.+++....++.....-+...+++..+.+|+++...+.|..+...|+.+.
T Consensus       263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            778889999999999999999999999999999999999999999998887

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.33  E-value=9.8e-11  Score=105.60  Aligned_cols=140  Identities=11%  Similarity=0.073  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHh-hCCCCcC----CchhHHHHHHHHHHH
Q 020873           10 YSGLMCMALSSTIYFFMQVISDVFMVQSIPL-FETVFMRCTVTLILSYLWLRR-SGQPIFG----PMHARNLLVLRALVG   83 (320)
Q Consensus        10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~~~l~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~   83 (320)
                      ..|..+++.++++|+...+..|... +..++ ....++...++.+.+.+.... .+.+...    ........+..++..
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t  266 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence            3488999999999999999999876 45544 456666666665555443332 2211111    111112233344555


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccc
Q 020873           84 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT  150 (320)
Q Consensus        84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~  150 (320)
                      .+++.++++++++.+++.++...++.|++++++++++++|+++..+++|.++.+.|+.+..+++..+
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            6788889999999999999999999999999999999999999999999999999999988765443

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.25  E-value=2.7e-10  Score=92.20  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=197.7

Q ss_pred             HHHHhh-cCCCC-HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Q 020873           29 ISDVFM-VQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLS  106 (320)
Q Consensus        29 ~~k~~~-~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~  106 (320)
                      -.|+.. .++.+ .+.+.+.+.+...+-+...-+.+-.. .+.++. +.++.-++..+.....--.++||++...-++..
T Consensus        24 tNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~-fR~t~a-K~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFK  101 (309)
T COG5070          24 TNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVE-FRLTKA-KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFK  101 (309)
T ss_pred             hhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhh-eehhhh-hhhcCHHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence            335544 23443 45566677666555444432222111 111222 222333444444444445789999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHH
Q 020873          107 FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSIT  186 (320)
Q Consensus       107 ~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~  186 (320)
                      +++-+.++.....++|.|.+-.+.....+.+..-+.-.+.|.+...               .....-..|.++...-+++
T Consensus       102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~---------------~~~~~lN~GY~Wm~~Ncls  166 (309)
T COG5070         102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA---------------FKAQILNPGYLWMFTNCLS  166 (309)
T ss_pred             cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH---------------HHhcccCCceEEEehhhHh
Confidence            9999999999999999999999999999998888887777642210               0012234688999999999


Q ss_pred             hHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC------chhHHHHHHHHHHHHHHHHHHHHHhcc
Q 020873          187 GGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFVLP------SFYSFLLMLVLSILAFFAEVLLARGLQ  259 (320)
Q Consensus       187 ~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~~~~~~~~a~~  259 (320)
                      .+.+-...|+..+ .+-.....++|..+.+.+++..+.+..++|.+.      ..+...+++..|+++..--++--+.++
T Consensus       167 saafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvr  246 (309)
T COG5070         167 SAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVR  246 (309)
T ss_pred             HHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEe
Confidence            9999888887554 233346788999999999999998988888754      345677888899999777778889999


Q ss_pred             ccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcccc
Q 020873          260 LEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM  316 (320)
Q Consensus       260 ~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~~  316 (320)
                      ..+.+..+.+..++-.-..+-|.++++|+.+...+....+=.+++.++...+.+|++
T Consensus       247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q  303 (309)
T COG5070         247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988888888777766555443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.25  E-value=4.3e-10  Score=99.38  Aligned_cols=137  Identities=12%  Similarity=0.022  Sum_probs=107.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHH-HHHHHHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNL-LVLRALVGFLSL   87 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   87 (320)
                      ...|..+.+.++++|+......|... ++.++....... .++.+++.++..........+...+.. ..++.+...+++
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999876 667777765444 455555555555443221122222322 345555567889


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      .++++++++.+++.++++.+++|+++.+++++++||+++..+++|..+.+.|++......
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999886554

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.23  E-value=4.3e-10  Score=99.49  Aligned_cols=134  Identities=15%  Similarity=0.124  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-cCCchhHHHHHHHHHHHHHHHH
Q 020873           10 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLF   88 (320)
Q Consensus        10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   88 (320)
                      ..|..+++.++++|+...+..|+.. ++.++.....   ....+.+.+.....+... ..+.+.+...+..++...+++.
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~  230 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYA  230 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999975 5667765432   222333333222232221 1223444455556667778999


Q ss_pred             HHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           89 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        89 ~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      ++++++++.+++.++.+.++.|+++.+++++++||+++..+++|.++.+.|+.+....+
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999998876543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.23  E-value=1.8e-09  Score=94.98  Aligned_cols=280  Identities=18%  Similarity=0.159  Sum_probs=160.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS   86 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (320)
                      .+...|..+++.++++-+....+.|+.. ...+.   .-.              ++++. ..+.-..+.++.+.+...++
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~-~r~~~---~~~--------------~~~~~-~~~~l~~~~W~~G~~~~~~g   63 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSH-LRLPR---GSL--------------RAGSG-GRSYLRRPLWWIGLLLMVLG   63 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc---ccc--------------cccch-hhHHHhhHHHHHHHHHHhcc
Confidence            4567899999999999999999999764 11100   000              00000 00001113344445556688


Q ss_pred             HHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccc
Q 020873           87 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL  166 (320)
Q Consensus        87 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~  166 (320)
                      ..+.+.|+...|.+..+++....-++..+++..++|||++++++.|..+++.|..++........+    ..+.  ++-.
T Consensus        64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~----~~t~--~~l~  137 (300)
T PF05653_consen   64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP----IHTL--DELI  137 (300)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC----cCCH--HHHH
Confidence            889999999999999999999999999999999999999999999999999999877543321100    0000  0000


Q ss_pred             cccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHH-------HHHHHHhh-hcCCcccCchhHHH
Q 020873          167 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILAS-------PAAGICLF-FFEEFVLPSFYSFL  238 (320)
Q Consensus       167 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~  238 (320)
                      +...+........... .+...+.....+|..+++  .........+.+.       .+...... ..++....++..|.
T Consensus       138 ~~~~~~~fl~y~~~~~-~~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~  214 (300)
T PF05653_consen  138 ALLSQPGFLVYFILVL-VLILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYL  214 (300)
T ss_pred             HHhcCcceehhHHHHH-HHHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence            0000011111111111 112222222222212111  1100000001111       01111111 11222223455666


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccccchhhhH-HHHHHHHHHHHhccC--Cchh----hhhhhHHhhhhhhhhhhcC
Q 020873          239 LMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE-VALTQLWGMGLSRIA--PSFG----RLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       239 ~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~-pv~~~~~~~l~~~e~--~~~~----~~~G~~lii~g~~~~~~~~  311 (320)
                      .++....+...-..+.++|+++.+++.+.++.+.. -.++++-+.++++|.  .+..    ...|+..++.|+.++..+|
T Consensus       215 l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~  294 (300)
T PF05653_consen  215 LLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK  294 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence            65555555577788999999999999999888844 556667777788874  3342    3678888999998887665


Q ss_pred             Ccc
Q 020873          312 PEK  314 (320)
Q Consensus       312 ~~~  314 (320)
                      +.+
T Consensus       295 ~~~  297 (300)
T PF05653_consen  295 DKE  297 (300)
T ss_pred             chh
Confidence            543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=99.22  E-value=2.1e-08  Score=88.86  Aligned_cols=291  Identities=11%  Similarity=0.013  Sum_probs=180.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHHHHH---HHHHhhCC---CCcCCchhHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFM-RCTVTLILSY---LWLRRSGQ---PIFGPMHARNLLVLR   79 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~-r~~~~~~~l~---~~~~~~~~---~~~~~~~~~~~~~~~   79 (320)
                      ++...|+++.++++++||+...-.|..  ++.+-... +. -..++.++..   .....+.-   -...+.+.+..-+++
T Consensus         3 ~~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          3 NAIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             chhHHHHHHHHHHHHHhhccccccccc--CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            345789999999999999999999983  44442222 11 1112222222   11111110   011234566778889


Q ss_pred             HHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHHHHhhccccccc
Q 020873           80 ALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKL-------KIAEIGGLALSFFGVLFIFRRILTTQ  151 (320)
Q Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~-------~~~~~~g~~l~~~Gv~li~~~~~~~~  151 (320)
                      |++-.+++..++.++++.+.+.+.++ ..+.-+...++..++++|-.       .....+|+++.++|+++....+...+
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999988 55888899999999988643       23468899999999999988443221


Q ss_pred             cccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHH-------HHhhhccCCCCchhHHHHHHH---HHHHHHHH-
Q 020873          152 AVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY-------CLIKAGANASDQPLVTVFSFG---ILASPAAG-  220 (320)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~---~~~~~~~~-  220 (320)
                      .         +..+++..+...-.|+..++++.+.++.|+       ...+.....+.++.....-+.   +.+....- 
T Consensus       160 ~---------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~  230 (345)
T PRK13499        160 R---------KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNL  230 (345)
T ss_pred             c---------ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            1         011000123445689999999999999999       444331111222222222111   12222222 


Q ss_pred             HHhhh---c-CCcc---cC-c-----hhHHHHHHHHHHHHHHHHHHHHHhccccccccccc---hh-hhHHHHHHHHHHH
Q 020873          221 ICLFF---F-EEFV---LP-S-----FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN---VQ-YIEVALTQLWGMG  283 (320)
Q Consensus       221 ~~~~~---~-~~~~---~~-~-----~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~---~~-~~~pv~~~~~~~l  283 (320)
                      +....   . +++.   .. .     ..+...-.+.|+.-..++..+..+-++.+......   +. .+..+++.+++. 
T Consensus       231 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-  309 (345)
T PRK13499        231 GFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-  309 (345)
T ss_pred             HHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-
Confidence            11111   1 1111   11 1     22333335556666788888888888776654433   44 778899999998 


Q ss_pred             HhccCCc------hhhhhhhHHhhhhhhhhhhc
Q 020873          284 LSRIAPS------FGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       284 ~~~e~~~------~~~~~G~~lii~g~~~~~~~  310 (320)
                      +++|.=+      ...++|.++++.|..+....
T Consensus       310 ~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        310 VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            5999655      45589999999998877553

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.19  E-value=8.6e-10  Score=97.42  Aligned_cols=136  Identities=15%  Similarity=0.151  Sum_probs=107.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--cCCchhHHHHH-HHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLV-LRALVGFL   85 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~   85 (320)
                      ...|..+.++++++|+......|... +. ++.....+++..+.+.+.++....+...  ..+.+.+..+. .+.+...+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLP-LP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcC-CC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999864 32 3455667888888777776655443221  11223343434 44445668


Q ss_pred             HHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873           86 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  146 (320)
Q Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~  146 (320)
                      ++.++++++++.++++++.+.++.|+++.+++++++||+++..+++|..+.+.|+.+....
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999988654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.19  E-value=7.8e-11  Score=93.51  Aligned_cols=215  Identities=11%  Similarity=0.061  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCcc
Q 020873           79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV  158 (320)
Q Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~  158 (320)
                      ..++.+..++.|..|++.+++++++.+.....-|+.+++++.+|+|+...++++.++++.|++++.+.|..         
T Consensus        59 F~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~---------  129 (290)
T KOG4314|consen   59 FSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE---------  129 (290)
T ss_pred             eEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch---------
Confidence            35666788999999999999999999999999999999999999999999999999999999999877632         


Q ss_pred             CCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchh-----HHHHHHHHHHHHHHHHHhhhc--CCccc
Q 020873          159 KPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPL-----VTVFSFGILASPAAGICLFFF--EEFVL  231 (320)
Q Consensus       159 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~  231 (320)
                                 ..+.+.|+.+++.++...|.|.+.-|+......-..     +.+.+..+.-.-+-.+...++  ++++.
T Consensus       130 -----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qs  198 (290)
T KOG4314|consen  130 -----------HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQS  198 (290)
T ss_pred             -----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHH
Confidence                       256889999999999999999999998653211111     111111111111111111111  23333


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          232 PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       232 ~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      .....|..+...+.++..-+.+.+.+.....|...+.-......-...++.++-+-..+...+.|..+++.|.++....+
T Consensus       199 FA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  199 FAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             HhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            33445666666666666666677777788888888877777777788888776666788889999999999988776655


Q ss_pred             Cc
Q 020873          312 PE  313 (320)
Q Consensus       312 ~~  313 (320)
                      .+
T Consensus       279 d~  280 (290)
T KOG4314|consen  279 DK  280 (290)
T ss_pred             ch
Confidence            44

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.18  E-value=6.4e-10  Score=97.70  Aligned_cols=131  Identities=11%  Similarity=0.046  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhh---cCCcccCchhHHHHHHHHHHHHHHHHHH
Q 020873          177 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFF---FEEFVLPSFYSFLLMLVLSILAFFAEVL  253 (320)
Q Consensus       177 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gi~~~~~~~~  253 (320)
                      ..+.+.+++++|..++..|+..++ +++.  .++......+...+....   ..++..++.+.|..+...++.....+.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            467899999999999999986543 3332  344444444443333222   1233334445555556566666899999


Q ss_pred             HHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          254 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      +++++++.+++.++++.+++|+++.+++++++||+++..+++|..+++.|+.+....
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.8e-10  Score=95.99  Aligned_cols=254  Identities=12%  Similarity=0.082  Sum_probs=191.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhCC--CC------cCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhH
Q 020873           39 PLFETVFMRCTVTLILSYLWLRRSGQ--PI------FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP  110 (320)
Q Consensus        39 ~~~~~~~~r~~~~~~~l~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~P  110 (320)
                      .|....+++++....++..+.....+  ..      ..+.+.-+...-..+.......+..+++++.+++.-.+--.+..
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            48888999999888777766432111  10      11112223344445555556666788999999999999999999


Q ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHH
Q 020873          111 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS  190 (320)
Q Consensus       111 i~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~  190 (320)
                      +|+++++++++|+|-+..-..+..+.+.|..+=++.++.                   .+...+.|.+++..+.++-|+.
T Consensus       140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~-------------------~~~ls~~GvifGVlaSl~vAln  200 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS-------------------TGTLSWIGVIFGVLASLAVALN  200 (347)
T ss_pred             hHHHHhHHhhcccccccccceeehhheehheeccccccc-------------------cCccchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999888888887765443321                   2356789999999999999999


Q ss_pred             HHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCCc-------ccCchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 020873          191 YCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEK  262 (320)
Q Consensus       191 ~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~  262 (320)
                      .+..||... ..+..+...++..+.+.++.++.....++.       +.++..-|..+.+.|++++.-.+.-.+=+|..+
T Consensus       201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TS  280 (347)
T KOG1442|consen  201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTS  280 (347)
T ss_pred             HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecc
Confidence            999998443 345667888888888887777665544332       234667788888899999555555555677888


Q ss_pred             cccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          263 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       263 ~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      |..-.+-..-....-.+++..+.+|.-+..-|-+-.+++.|...+.+.|
T Consensus       281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            8877777777888889999999999999999999999999988887643

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.08  E-value=2.5e-09  Score=94.63  Aligned_cols=136  Identities=10%  Similarity=0.015  Sum_probs=107.1

Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCccc-----CchhHHHHHHHHHH
Q 020873          171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSI  245 (320)
Q Consensus       171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi  245 (320)
                      ++...|.++.+.++++|+...+..|.. . +.++....+++...+.++.........+...     .+...+.... .+.
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA-VSA   80 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-HHH
Confidence            456689999999999999999999875 3 4678888888888887665544333222111     1233333333 444


Q ss_pred             H-HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          246 L-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       246 ~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      + ....+.++++++++.+++.++.+.++.|++..++++++++|+++..++.|..+.+.|+.+...
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            4 478899999999999999999999999999999999999999999999999999999988754

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.03  E-value=1.5e-08  Score=89.85  Aligned_cols=137  Identities=15%  Similarity=0.158  Sum_probs=100.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHHHHHHHHHh-hCCC------CcCCchhHH-HHHH
Q 020873           10 YSGLMCMALSSTIYFFMQVISDVFMVQSIP---LFETVFMRCTVTLILSYLWLRR-SGQP------IFGPMHARN-LLVL   78 (320)
Q Consensus        10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~---~~~~~~~r~~~~~~~l~~~~~~-~~~~------~~~~~~~~~-~~~~   78 (320)
                      ..|..+++.++++|+...+..|... +..+   .....++....+.+.+...... .+..      ...+.+.+. ....
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            4699999999999999999999865 3222   2233344444443333322221 2111      011223333 3444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      +.+...+++.++++++++.++++++.+..+.|+++.+++++++||+++..+++|..+.+.|+.+...+.
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            556666899999999999999999999999999999999999999999999999999999999887664

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.03  E-value=3.6e-09  Score=84.17  Aligned_cols=134  Identities=19%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhccCC------CCchhHHHHHHHHHHHHHHHHHhhhcCCcccC-------------chhH
Q 020873          176 AVLVGLFSSITGGISYCLIKAGANA------SDQPLVTVFSFGILASPAAGICLFFFEEFVLP-------------SFYS  236 (320)
Q Consensus       176 G~~~~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  236 (320)
                      |.++++.+.++.|++.++.|+..++      +.++.....+....+.+...+.....++....             +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5688999999999999999886544      56677888888888888887776665543310             2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          237 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       237 ~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      +..+...|+++...+...+..+++.+|...+.......+...+.+++++||++|..++.|..+.+.|.+++++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            6667777888899999999999999999999999999999999999999999999999999999999887653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=99.03  E-value=1.1e-10  Score=95.79  Aligned_cols=275  Identities=11%  Similarity=0.044  Sum_probs=190.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873           11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF   90 (320)
Q Consensus        11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (320)
                      ..++.+++-++.||+.+.+...   -+-.|.+-..-.-+.+.++...+.+..  ++..+.+.+..-+++|+.-..++...
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT~GALifaiiv~~~~--~p~~T~~~~iv~~isG~~Ws~GQ~~Q   76 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTTLGALIFAIIVFLFV--SPELTLTIFIVGFISGAFWSFGQANQ   76 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeee---cCCChhHhhhhccHHHHHHHHHHheee--cCccchhhHHHHHHhhhHhhhhhhhh
Confidence            3578899999999999988764   345666666555555555544444332  23334555666778888888999999


Q ss_pred             HHHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHHH----HHHHHHHHHHHHHhhccccccccccCCccCCCcccc
Q 020873           91 VYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS  165 (320)
Q Consensus        91 ~~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~  165 (320)
                      +.|.++.+++++.++.. ++-+-+.+.+.+.+||-.+..+    .+++++.+.|+.+-.+.+...            .  
T Consensus        77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n------------k--  142 (288)
T COG4975          77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN------------K--  142 (288)
T ss_pred             hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc------------c--
Confidence            99999999999999965 7777888999999999877765    456777778887776665321            1  


Q ss_pred             ccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHH
Q 020873          166 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSI  245 (320)
Q Consensus       166 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi  245 (320)
                      +.+..+..-.|+...+.+.+.|-.|.+..+-..   .+-.+...-+ ..+.++..+..-.... +.+..+....-...|+
T Consensus       143 ~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~---v~g~saiLPq-AiGMv~~ali~~~~~~-~~~~~K~t~~nii~G~  217 (288)
T COG4975         143 EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD---VDGLSAILPQ-AIGMVIGALILGFFKM-EKRFNKYTWLNIIPGL  217 (288)
T ss_pred             cccChHhhhhheeeeeeeccceeeeEeeecccc---ccchhhhhHH-HHHHHHHHHHHhhccc-ccchHHHHHHHHhhHH
Confidence            111223345788888889999999988887753   2222332222 2333333222111111 2333333444456788


Q ss_pred             HHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhh----hhhhHHhhhhhhhhhh
Q 020873          246 LAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFYTMY  309 (320)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~----~~G~~lii~g~~~~~~  309 (320)
                      .-..++..++.+.++.+....=.+..+..+.+.+-+.++++|+=|..+    ++|.++++.|..++..
T Consensus       218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            888999999999999999888888889999999999999999888776    4677888887776644

>TIGR00688 rarD rarD protein

Probab=98.99  E-value=7.7e-09  Score=89.60  Aligned_cols=133  Identities=14%  Similarity=0.071  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc-------ccCchh-HHHHHHHHHHH
Q 020873          175 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFY-SFLLMLVLSIL  246 (320)
Q Consensus       175 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~l~~~gi~  246 (320)
                      .|..+.+.++++|+...+..|.. . +.++....++..+.+.+...+......+.       ...+.. .+..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            37889999999999999999984 3 46788888988888876655443322211       112222 24455666777


Q ss_pred             HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          247 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      ....+.++++++++.+++.++.+.++.|+++.+++++++||+++..++.|..+.+.|+.+...
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999887654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.99  E-value=8.1e-09  Score=91.70  Aligned_cols=139  Identities=13%  Similarity=0.129  Sum_probs=107.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCc---------h---hH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM---------H---AR   73 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~--~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~---------~---~~   73 (320)
                      .+..|.+++++++++|+...+..|... +  +.++.....+....+.+.+.++....+.......         .   .+
T Consensus       142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (302)
T TIGR00817       142 FNWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIY  220 (302)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHH
Confidence            345699999999999999999999876 5  7899999999999998888887654332110000         0   11


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           74 NLLVLRAL-VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        74 ~~~~~~~~-~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      ...+..+. +....+.+++.+++++++..+++.....|+++.++++++++|+++..+++|..+++.|+.+..+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            11222222 233344567789999999999999999999999999999999999999999999999999987554

specificities overlap.

>TIGR00803 nst UDP-galactose transporter

Probab=98.93  E-value=1e-08  Score=86.86  Aligned_cols=207  Identities=10%  Similarity=0.108  Sum_probs=127.7

Q ss_pred             ccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccc---cCCc--cCCCccccccccCchh
Q 020873           99 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV---SGGL--VKPGEAISLNVRGSDH  173 (320)
Q Consensus        99 ~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~  173 (320)
                      ........+..|+++++..+...+||.++.++++..+...|+..-...+.+....   ..++  .+.+++.+......+.
T Consensus         4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~   83 (222)
T TIGR00803         4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNP   83 (222)
T ss_pred             ccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccH
Confidence            3444556778889999999988999999999999999999988655444321000   0000  0000000001112345


Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhccCCCCchh-HHHHHHHHHHHHHHHHHhhhcCCcc----cCchhHHH-HHHHHHHHH
Q 020873          174 MLAVLVGLFSSITGGISYCLIKAGANASDQPL-VTVFSFGILASPAAGICLFFFEEFV----LPSFYSFL-LMLVLSILA  247 (320)
Q Consensus       174 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~l~~~gi~~  247 (320)
                      ..|....+.+..+-+...+..++..++++... .........+.+..... ....+..    ......+. ......+.+
T Consensus        84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (222)
T TIGR00803        84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSV-LLWSDGTLISNFGFFIGYPTAVWIVGLLN  162 (222)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHH-HhhcccchhhccCcccCCchHHHHHHHHH
Confidence            67888888888888888888877554333221 11122222222211111 1111111    00000111 112223445


Q ss_pred             HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873          248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  306 (320)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~  306 (320)
                      ..+..+..+.+|+.++...+....++++++.+++++++||+++..++.|+.+++.|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            77778899999999999999999999999999999999999999999999999988754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=98.91  E-value=1e-07  Score=80.10  Aligned_cols=223  Identities=9%  Similarity=0.076  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccc
Q 020873           74 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV  153 (320)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~  153 (320)
                      +.++.=.++...+..+.|.++.+++++.-..+-...-+|+.+++.-+++++++.++|+|+.....|++++-..+..... 
T Consensus        87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~-  165 (372)
T KOG3912|consen   87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT-  165 (372)
T ss_pred             ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-
Confidence            3445568888899999999999999999999999999999999999999999999999999999999988766532211 


Q ss_pred             cCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhh-ccCCCCchhHHHHHHHHHHHHHHHHHhhhc------
Q 020873          154 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA-GANASDQPLVTVFSFGILASPAAGICLFFF------  226 (320)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  226 (320)
                                 ..-..-+....|+.+.+.+-+.-|+.++..+| +.+.+.+|.....+.++.|.++...+....      
T Consensus       166 -----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~  234 (372)
T KOG3912|consen  166 -----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSG  234 (372)
T ss_pred             -----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence                       00111244678999999999999999998866 445678888888888888865544332211      


Q ss_pred             CCcc-cC--chhHHHHH---------HHHHHHH-HHHHHHH----HHhccccccccccchhhhHHHHHHHHHHHHhccCC
Q 020873          227 EEFV-LP--SFYSFLLM---------LVLSILA-FFAEVLL----ARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAP  289 (320)
Q Consensus       227 ~~~~-~~--~~~~~~~l---------~~~gi~~-~~~~~~~----~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~  289 (320)
                      ++++ .|  ..++|...         ++++..+ ..+-.++    ..-.|+.+++.=.+.-.+...+-=+++..+.-|.+
T Consensus       235 ~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f  314 (372)
T KOG3912|consen  235 DSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYF  314 (372)
T ss_pred             CcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence            1111 11  12333221         1222222 2222222    23345666666667777777666677777888999


Q ss_pred             chhhhhhhHHhhhhhhhhh
Q 020873          290 SFGRLVGCVLILVSVFYTM  308 (320)
Q Consensus       290 ~~~~~~G~~lii~g~~~~~  308 (320)
                      ...|+.|..+.+.|+++++
T Consensus       315 ~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  315 HLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998875

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.88  E-value=2.7e-08  Score=76.13  Aligned_cols=122  Identities=16%  Similarity=0.121  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-HHHHHH
Q 020873          175 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVL  253 (320)
Q Consensus       175 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~~~~~  253 (320)
                      .|.++.+.+.++-+...++.|+-.++..+..... . ..     .... ..      .++  +. .++.|+.. ..++.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~-~-~~-----~~~~-~~------~~p--~~-~i~lgl~~~~la~~~   64 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW-D-FI-----AALL-AF------GLA--LR-AVLLGLAGYALSMLC   64 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh-H-HH-----HHHH-HH------hcc--HH-HHHHHHHHHHHHHHH
Confidence            3678888899999999999998654322211111 0 00     0000 00      111  11 34566665 999999


Q ss_pred             HHHhccccccccccchhhhHHHHHHHHHHH--HhccCCchhhhhhhHHhhhhhhhhhhcCCc
Q 020873          254 LARGLQLEKTSKVANVQYIEVALTQLWGMG--LSRIAPSFGRLVGCVLILVSVFYTMYIGPE  313 (320)
Q Consensus       254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l--~~~e~~~~~~~~G~~lii~g~~~~~~~~~~  313 (320)
                      |.+++++.+.+++.++....++...+.++.  ++||++|..+++|..+|++|+++..+++++
T Consensus        65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            999999999999999999999888888885  899999999999999999999998765544

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.86  E-value=1.4e-07  Score=74.94  Aligned_cols=132  Identities=20%  Similarity=0.269  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--------cC-----Cchh
Q 020873           12 GLMCMALSSTIYFFMQVISDVFMV------QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHA   72 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~~------~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~--------~~-----~~~~   72 (320)
                      |.++++.+.++.+...+..|...+      ++.++.++..+....+.+++.+.....++..        ..     ..+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            678899999999999999998763      3789999999999999999888765433221        00     2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873           73 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  143 (320)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li  143 (320)
                      +..++..++.....+.+.+..++++++...++....-.+.+.++++++++|+++..++.|+.+++.|+.+-
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            55677778888899999999999999999999999999999999999999999999999999999998753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.86  E-value=7.8e-08  Score=80.39  Aligned_cols=273  Identities=11%  Similarity=0.076  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHhh-cCCCCH--HHHHHHHHHHHHHHHHHHHH-hhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020873           21 TIYFFMQVISDVFM-VQSIPL--FETVFMRCTVTLILSYLWLR-RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR   96 (320)
Q Consensus        21 ~~~~~~~~~~k~~~-~~~~~~--~~~~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   96 (320)
                      +.+=.......+.. .++..|  +.+++.+++.-..+-+.-.. .+.++   +...|+.....+......+.+-..++.|
T Consensus        53 f~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~---r~iP~rtY~~la~~t~gtmGLsn~SlgY  129 (367)
T KOG1582|consen   53 FLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKR---RVIPWRTYVILAFLTVGTMGLSNGSLGY  129 (367)
T ss_pred             HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccc---eecchhHhhhhHhhhhhccccCcCcccc
Confidence            33444555555544 355664  55677776654333322211 12222   2223444455555666667777778888


Q ss_pred             CCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHH
Q 020873           97 LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLA  176 (320)
Q Consensus        97 ~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  176 (320)
                      ++-..-.+..++--+-+.+.+.++-+.|-+..+..+..+...|.++....|...                  .++.+..|
T Consensus       130 LNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~------------------sPNF~~~G  191 (367)
T KOG1582|consen  130 LNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT------------------SPNFNLIG  191 (367)
T ss_pred             ccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc------------------CCCcceee
Confidence            887777777776666677788888999999999999999999999987766321                  23567788


Q ss_pred             HHHHHHHHHHhHHHHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHhhhcCCcc-------cCchhHHHHHHHHHHHHH
Q 020873          177 VLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFV-------LPSFYSFLLMLVLSILAF  248 (320)
Q Consensus       177 ~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~  248 (320)
                      +...-.+-++-|.-...+.+..+. ..+.....++...++.+..+......++..       ..+.+...+.+..+..+.
T Consensus       192 v~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gy  271 (367)
T KOG1582|consen  192 VMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGY  271 (367)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhH
Confidence            888888888877777777665543 334444556666666666655444443311       123446777778888888


Q ss_pred             HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873          249 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  314 (320)
Q Consensus       249 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~  314 (320)
                      ++........+..|+..++.+....-..++++++++|..++|....-|..+++.|+++..+.++.|
T Consensus       272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk  337 (367)
T KOG1582|consen  272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK  337 (367)
T ss_pred             hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence            888888888899999999999999999999999999999999999999999999999988877544

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.85  E-value=1.3e-07  Score=70.66  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           81 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      ++...++.++..++++.|.+.+..+.++.|+++.+++++++|||+++++++|+.++++|++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5566889999999999999999999999999999999999999999999999999999999875

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.83  E-value=6.8e-08  Score=85.09  Aligned_cols=129  Identities=18%  Similarity=0.216  Sum_probs=101.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF   84 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (320)
                      ..+|+.+.++++++++......|..   +.||....+....    .+.++..+.  + +.++.. .+..+..++.|+...
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~~Gi~~~  222 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-LAKPLK-KYAILLNILPGLMWG  222 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-cccchH-HHHHHHHHHHHHHHH
Confidence            3689999999999999999999963   4788887555554    333333333  1 112222 233334455777778


Q ss_pred             HHHHHHHHHHh-cCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHHHHHhh
Q 020873           85 LSLFSFVYSIQ-RLPLSQATVLSFTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIF  144 (320)
Q Consensus        85 ~~~~~~~~a~~-~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~----~g~~l~~~Gv~li~  144 (320)
                      +++.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.+++++    +|.++.+.|+.++.
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            99999999999 99999999999999999999999999999999999    99999999998874

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.82  E-value=5.4e-08  Score=81.54  Aligned_cols=264  Identities=9%  Similarity=0.038  Sum_probs=168.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCccchhhhhhhhHHHHHHHH
Q 020873           39 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAA  117 (320)
Q Consensus        39 ~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~a~~l~~~~Pi~~~ll~  117 (320)
                      +...+++.++++-+.--+++.  .+-...+++-..+.........+..+.+..+|+++ ++...=.++.+-.++-+++++
T Consensus        32 sgNLITFaqFlFia~eGlif~--skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g  109 (330)
T KOG1583|consen   32 SGNLITFAQFLFIATEGLIFT--SKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG  109 (330)
T ss_pred             CeeehHHHHHHHHHHhceeee--ccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence            336677777776554433332  22111122333344455555666778888999996 677777777888999999999


Q ss_pred             HHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccc-ccccCchhHHHHHHHHHHHHHhHHHHHHhhh
Q 020873          118 RIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS-LNVRGSDHMLAVLVGLFSSITGGISYCLIKA  196 (320)
Q Consensus       118 ~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~  196 (320)
                      |++.|+|-+.+|..++++..+|+++.......+...    --++.+.+ .......-..|+.+...+-+..|.-.+.++.
T Consensus       110 ~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~----~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~  185 (330)
T KOG1583|consen  110 WILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS----KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET  185 (330)
T ss_pred             HHhccceeehhhhhhHHhhhhhheeEEeecCcchhh----hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998876543322110    00001111 1112223456777777777776666665543


Q ss_pred             cc-CCCCchhHHHHHHHHHHHHHHHHHhh-h---------cCCcccC-----chhHHHHHHHHHHHHHHHHHHHHHhccc
Q 020873          197 GA-NASDQPLVTVFSFGILASPAAGICLF-F---------FEEFVLP-----SFYSFLLMLVLSILAFFAEVLLARGLQL  260 (320)
Q Consensus       197 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~-----~~~~~~~l~~~gi~~~~~~~~~~~a~~~  260 (320)
                      .= +...++...++|....+.+..+...- +         .+....|     -+..|.+++...+..-.+-=-.+..-.+
T Consensus       186 ~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te  265 (330)
T KOG1583|consen  186 TYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTE  265 (330)
T ss_pred             HHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhce
Confidence            22 22345667788888877766543321 0         1111122     2344555544433333333333344456


Q ss_pred             cccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873          261 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  308 (320)
Q Consensus       261 ~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~  308 (320)
                      .++-.++++..+.-.++.+++.+.++.++++..|+|..++..|-++..
T Consensus       266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            677888899999999999999999999999999999999999987764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.78  E-value=3.5e-07  Score=82.79  Aligned_cols=136  Identities=10%  Similarity=0.118  Sum_probs=101.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHHhhCCC-----------CcCCc-
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQP-----------IFGPM-   70 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~~~l~~~~~~~~~~-----------~~~~~-   70 (320)
                      +..|.+++++++++|+...+..|....+      +.++.....+....+.++++|+.......           ..... 
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            3569999999999999999999987622      35677666666778888877765422110           00000 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           71 --HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        71 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                        ......+..++.....+.+-+++++++++...++...+.|+++.++++++++|+++..+++|.++++.|+.+..
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence              11112233334444444555679999999999999999999999999999999999999999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.77  E-value=5.4e-07  Score=79.14  Aligned_cols=134  Identities=20%  Similarity=0.278  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHH-HHH
Q 020873           10 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVF-MRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL   87 (320)
Q Consensus        10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   87 (320)
                      ..|..+.+.++++|+......|...  +.++..... +.+........+....... .....+.+......++... .++
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~  229 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAY  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999764  556666655 3333222222222222222 2233444555555555555 799


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  146 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~  146 (320)
                      .++++++++.+++.++.+..+.|++..++++++++|+++.++++|..+.+.|+.+....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999988654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.75  E-value=4.3e-07  Score=69.50  Aligned_cols=121  Identities=20%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873           11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF   90 (320)
Q Consensus        11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (320)
                      +|+++.+++.++-+...++-|... ++.+........  ...+      ...       .......+.+.++..+++.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~~--~~~~------~~~-------~~p~~~i~lgl~~~~la~~~w   65 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWDF--IAAL------LAF-------GLALRAVLLGLAGYALSMLCW   65 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhHH--HHHH------HHH-------hccHHHHHHHHHHHHHHHHHH
Confidence            478888999999999999999876 444332211111  0000      000       111235677778888999999


Q ss_pred             HHHHhcCCccchhhhhhhhHHHHHHHHHH--HhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           91 VYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        91 ~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~--~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      .+++++.|.+.+.++.+..+..+.+.++.  ++||+++.++++|+.+.++|++++..++
T Consensus        66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999888888885  8999999999999999999999987554

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.64  E-value=1.1e-06  Score=72.91  Aligned_cols=134  Identities=14%  Similarity=0.042  Sum_probs=110.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHH-HHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRAL-VGFLSL   87 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   87 (320)
                      ...|..+++.+..||+..-+..|.+. +..+.-.-+..-+..++++..|+-..+.......++....-+..++ ...+.+
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY  224 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY  224 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence            46899999999999999999999876 4667777788889999999999877665544444444444443344 445888


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  143 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li  143 (320)
                      .+-..++++.|...-+++.++.|.+..+.+++++||+++..||+++...+++..=.
T Consensus       225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999988887633

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.63  E-value=1.9e-07  Score=70.21  Aligned_cols=78  Identities=19%  Similarity=0.202  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCc
Q 020873          235 YSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE  313 (320)
Q Consensus       235 ~~~~~l~~~gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~  313 (320)
                      +.+.+....|+++ ..++.++++++++.+ ..++.+..++|+++.++++++++|+++..++.|..+++.|+.++.+.+.+
T Consensus        32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            5566677778777 599999999999999 48889999999999999999999999999999999999999999887654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.59  E-value=3.4e-06  Score=74.95  Aligned_cols=141  Identities=18%  Similarity=0.106  Sum_probs=107.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC----CCcCCchhHHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ----PIFGPMHARNLLVLRALV   82 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~   82 (320)
                      +++.+|-++++.+++++|..++..|... ++.|..+....-.+++.++..+....-.+    +...+.+....++..+++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            4678999999999999999999999987 78888888877777777777665442211    111222333333334444


Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 020873           83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL  148 (320)
Q Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~  148 (320)
                      .+..+.+.-..+++.++....+-.-++.+++++...+++|+++++..++|.++.++|.++....+.
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            555555666788889988888877889999999999999999999999999999999998865543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=5.6e-07  Score=77.40  Aligned_cols=275  Identities=19%  Similarity=0.129  Sum_probs=165.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL   87 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (320)
                      +..+|..+++.+.+..|.+..+.|... ....          .       --.+.++......+. +.+..+-+...++.
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl-~r~~----------~-------~~~ra~~gg~~yl~~-~~Ww~G~ltm~vGe   78 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGL-KRAG----------A-------SGLRAGEGGYGYLKE-PLWWAGMLTMIVGE   78 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHH-HHHh----------h-------hcccccCCCcchhhh-HHHHHHHHHHHHHh
Confidence            446778888888888888888888654 1110          0       001112211111111 33445556667899


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccc
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN  167 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~  167 (320)
                      ...|.|+.+.|.+..+++..++-+..++++..++|||++....+|..++++|-.+++.....++    ++.+.++-.+ .
T Consensus        79 i~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~----~i~t~~el~~-~  153 (335)
T KOG2922|consen   79 IANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ----EIESVEEVWE-L  153 (335)
T ss_pred             HhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc----ccccHHHHHH-H
Confidence            9999999999999999999999999999999999999999999999999999987765432211    0111111000 1


Q ss_pred             ccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHH----------HHhh-hcCCcccCchhH
Q 020873          168 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAG----------ICLF-FFEEFVLPSFYS  236 (320)
Q Consensus       168 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~  236 (320)
                      ..+.....-..+.+ ..++  +-....|+. +.+.+..   .|.++.+.+-..          .+-. +.++.....+..
T Consensus       154 ~~~~~Fliy~~~ii-l~~~--il~~~~~p~-~g~tnil---vyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~t  226 (335)
T KOG2922|consen  154 ATEPGFLVYVIIII-LIVL--ILIFFYAPR-YGQTNIL---VYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLT  226 (335)
T ss_pred             hcCccHHHHHHHHH-HHHH--HHheeeccc-cccccee---ehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHH
Confidence            11111111111111 1111  111222221 1122222   223333322111          0011 122333445667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccC--Cchh----hhhhhHHhhhhhhhhhh
Q 020873          237 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIA--PSFG----RLVGCVLILVSVFYTMY  309 (320)
Q Consensus       237 ~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~--~~~~----~~~G~~lii~g~~~~~~  309 (320)
                      |..+.....+...-....++|++..+++.++++.+ +--.++++-+.++++|-  .+..    ...|+..++.|+.++..
T Consensus       227 y~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~  306 (335)
T KOG2922|consen  227 WIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHR  306 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeee
Confidence            77777777777777778899999999999998888 44667788888889883  2332    46899999999998866


Q ss_pred             cCCc
Q 020873          310 IGPE  313 (320)
Q Consensus       310 ~~~~  313 (320)
                      .|..
T Consensus       307 ~kd~  310 (335)
T KOG2922|consen  307 TKDM  310 (335)
T ss_pred             eccc
Confidence            5443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.55  E-value=1.2e-06  Score=74.53  Aligned_cols=137  Identities=13%  Similarity=0.074  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcc-----cCchhHHHHHHHHHHHH
Q 020873          173 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV-----LPSFYSFLLMLVLSILA  247 (320)
Q Consensus       173 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~~  247 (320)
                      ...|+++++.+-+.|++...+.|-+.  +.++..+..+..+.+.++........+++.     ..+++.+......++.-
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44799999999999999999999863  567788888899998888776665555443     23566777777777777


Q ss_pred             HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      ..-...+.+|.+...+..+|.=.+++|++.+++|.++++|+++..|++...+..+|+....+..
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            8889999999999999999999999999999999999999999999999999999998877643

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.48  E-value=2e-06  Score=64.23  Aligned_cols=66  Identities=15%  Similarity=0.015  Sum_probs=60.8

Q ss_pred             HHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          244 SILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       244 gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      ++++ ..++.++..++|+.+.+++.++.++.++++.+++++++||+++..+++|..+++.|+++...
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3344 78999999999999999999999999999999999999999999999999999999987653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.36  E-value=1.1e-05  Score=69.18  Aligned_cols=122  Identities=17%  Similarity=0.183  Sum_probs=93.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL   87 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (320)
                      +..+|+...+++.+.+.....+.|.   .+.++....+=+.....+--..+.... +++...+ ..+.-++.|+....++
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~---~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k-~~~~nil~G~~w~ign  209 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKA---FHVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFEK-KSWKNILTGLIWGIGN  209 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHh---cCCChhHhHHHHHHHHHHHHHHHhhcc-ccccccc-chHHhhHHHHHHHHHH
Confidence            4578999999999999999999996   467777777655444333333333323 2222233 3456688899999999


Q ss_pred             HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHH
Q 020873           88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLA  134 (320)
Q Consensus        88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~  134 (320)
                      .+++.|.+..+.+.+..+.++..++..+-+.+++||+-+++++....
T Consensus       210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            99999999999999999999999999999999999999998765433

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.20  E-value=7.9e-05  Score=66.19  Aligned_cols=136  Identities=19%  Similarity=0.243  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHh--hCCCC------cCCchhHHHHHHHHHH
Q 020873           12 GLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRR--SGQPI------FGPMHARNLLVLRALV   82 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~--~~~~~------~~~~~~~~~~~~~~~~   82 (320)
                      |+.+++++.++-|......|... +.+.++.+..++...++.+...+....  .++..      ...++....++...+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999876 467789999999999988888776655  33211      1223456677788888


Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      +..++.+.+.-.++.++...+++..+--+++.+++.+++++++++.+|.|+.+.+.|..+-..++
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~  299 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK  299 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence            88888888899999999999999999999999999999999999999999999999999876654

; GO: 0055085 transmembrane transport

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=98.18  E-value=7.6e-05  Score=57.95  Aligned_cols=129  Identities=18%  Similarity=0.272  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhCC-CCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873           13 LMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSF   90 (320)
Q Consensus        13 ~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (320)
                      .++++++..+-+....+.-... +... |....+..+..+.+.+..+....++ +....++..++.+.+|+++...-.+.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~-~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLG-KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence            4567777777777777776665 5554 9999999999999888877665444 33333445566777999999999999


Q ss_pred             HHHHhcCCccchhhhhhhhHHHH-HHHHHH----HhcCcCcHHHHHHHHHHHHHHHH
Q 020873           91 VYSIQRLPLSQATVLSFTAPIMA-SIAARI----ILREKLKIAEIGGLALSFFGVLF  142 (320)
Q Consensus        91 ~~a~~~~~~~~a~~l~~~~Pi~~-~ll~~~----~l~e~~~~~~~~g~~l~~~Gv~l  142 (320)
                      .+..++++++.+..+.-..-++. .++..+    ..|+|+++++.+|+.+.++|+.+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999988766555544 455553    35789999999999999999864

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.01  E-value=2.3e-05  Score=57.89  Aligned_cols=110  Identities=13%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020873           17 ALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR   96 (320)
Q Consensus        17 ~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   96 (320)
                      ++.+++||.++++.|... ++.++..-.. |..-....    +.          .. +.+.+--+.+-.+...|++.+.+
T Consensus         2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~----Ll----------~n-~~y~ipf~lNq~GSv~f~~~L~~   64 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKF----LL----------LN-PKYIIPFLLNQSGSVLFFLLLGS   64 (113)
T ss_pred             eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHH----HH----------Hh-HHHHHHHHHHHHHHHHHHHHHhc
Confidence            346789999999999987 4443333221 21111111    00          11 22333455566778889999999


Q ss_pred             CCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873           97 LPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  143 (320)
Q Consensus        97 ~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li  143 (320)
                      .|.+.+.++. ++.=++|++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus        65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            9999999995 7888999999988878888999999999999998764

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=98.00  E-value=0.00022  Score=52.68  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873           76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  143 (320)
Q Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li  143 (320)
                      .....++...++.+...|+|++|.+.+..+ ....-+.+.+.+++++||++++.+++|+.+.+.|++.+
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            444566677888999999999999999776 44888899999999999999999999999999999886

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.00  E-value=5.3e-05  Score=56.92  Aligned_cols=71  Identities=18%  Similarity=0.315  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873           76 LVLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  146 (320)
Q Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~  146 (320)
                      ..+..++...++.++..++++.|.+.+..+. ...-+.+.+++.+++||+++..+++|+.+.++|++.+-..
T Consensus        33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            3556677788999999999999999998875 5888999999999999999999999999999999888543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.99  E-value=2.9e-05  Score=58.31  Aligned_cols=66  Identities=9%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          247 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      -..+++++..++|+.+.+.+=.+ ..+..+.+.+.+++++||+++..+++|..+++.|++.+....+
T Consensus        40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            38899999999999999877655 4688999999999999999999999999999999988866443

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.96  E-value=7.8e-05  Score=55.27  Aligned_cols=70  Identities=20%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873           76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  145 (320)
Q Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~  145 (320)
                      .....++...++.++..++++.|.+.+..+ ....-+.+.+++++++||++++.+++|+.+.++|++.+-.
T Consensus        33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            345566777889999999999999999887 4578888999999999999999999999999999999843

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.95  E-value=6.5e-05  Score=54.56  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      .++.-++...++.+.-.|+|++|.+.+..+ ....-+.+.+.+++++|||++..+++++.+.++|++.+-
T Consensus        33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            345566777889999999999999999776 558889999999999999999999999999999999874

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.88  E-value=0.00014  Score=53.42  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           77 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      ....++...++.+...|+|+.|.+.+..+. ...-+.+.+++.+++||++++.+++|+.+.+.|++.+-
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            444667778899999999999999997764 48889999999999999999999999999999999873

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.88  E-value=2.2e-06  Score=71.74  Aligned_cols=135  Identities=10%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHHHHHHH
Q 020873          173 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEV  252 (320)
Q Consensus       173 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~  252 (320)
                      ...|..+..++ ..+...++..++..+  .+|....-...+.-.....++......+..-....-.++.+=|+.+..+..
T Consensus        36 p~~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   36 PNLGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CccCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            45677777777 667777777877653  234444333344434443444333333321112222333455777888888


Q ss_pred             HHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          253 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       253 ~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      +.++++++.+-+-++.+.++.|+++.+++|.+++|+.|..+-.|..+.+.|++++.+.
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            8899999999999999999999999999999999999999999999999999998764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.84  E-value=0.00017  Score=64.37  Aligned_cols=133  Identities=14%  Similarity=0.058  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHh-----h----hcCCcccCchhHHHHHHH
Q 020873          172 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICL-----F----FFEEFVLPSFYSFLLMLV  242 (320)
Q Consensus       172 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~l~~  242 (320)
                      +...|+++.+++++|++-.++-.||. ++. +-+.. +.  ..+....++..     +    +.+.....+...+...+.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w-~wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l   78 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKV-KKW-SWETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL   78 (345)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccc-CCC-chhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence            46689999999999999999999984 322 21111 11  11111111111     1    112223346777888888


Q ss_pred             HHHHHHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccCC---ch----hhhhhhHHhhhhhhhhhh
Q 020873          243 LSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAP---SF----GRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       243 ~gi~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~---~~----~~~~G~~lii~g~~~~~~  309 (320)
                      .|++-.+++..+..++|+.+.++..++.. ++-+.+.+++.+++||-.   +.    .-++|.++++.|+.+..+
T Consensus        79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998776 889999999999999865   32    357899999999999888

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.80  E-value=0.019  Score=50.64  Aligned_cols=289  Identities=11%  Similarity=0.088  Sum_probs=171.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh--CC----CCcCCchhHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQ----PIFGPMHARNLLVLRAL   81 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~   81 (320)
                      +-..|+++..+++++-+...+-.|..  ++.+-...=....+++.++.-.....-  ++    -...+.+......+.|+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            44679999999999999988888874  555544443444445444433222111  11    01123345566677788


Q ss_pred             HHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHHHHhhccccccccc
Q 020873           82 VGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLFIFRRILTTQAV  153 (320)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~-------e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~  153 (320)
                      .-.++...|-.+++|++.+...-+ ..+.-.+..++-.++.+       ++-.+..++|++++++|+.+..+.+...+.+
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~  161 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE  161 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence            888889999999999999888554 44666666666555533       3445678999999999999998776432210


Q ss_pred             cCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC-------CCCchhHH-H---HHHHHHHHHHHHHH
Q 020873          154 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-------ASDQPLVT-V---FSFGILASPAAGIC  222 (320)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-------~~~~~~~~-~---~~~~~~~~~~~~~~  222 (320)
                              ..+  +..+.+--.|+..++.+.+..|..+.-...-..       ...++... +   ......+.+.-...
T Consensus       162 --------~~~--~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~y  231 (344)
T PF06379_consen  162 --------LGE--EAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIY  231 (344)
T ss_pred             --------hcc--chhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHH
Confidence                    111  111233458999999999888777764433110       01112111 1   11111222222222


Q ss_pred             hhhc----CCcc------c---CchhHHHHHHHHHHHHHHHHHHHHHhccccccc----cccchhhhHHHHHHHHHHHHh
Q 020873          223 LFFF----EEFV------L---PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS----KVANVQYIEVALTQLWGMGLS  285 (320)
Q Consensus       223 ~~~~----~~~~------~---~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~----~~s~~~~~~pv~~~~~~~l~~  285 (320)
                      ++..    .++.      .   +-..+....++.|+.-...+..|-.+-.+.++.    --.+.+.+..+++-+++. .+
T Consensus       232 c~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~l  310 (344)
T PF06379_consen  232 CLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-IL  310 (344)
T ss_pred             HHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HH
Confidence            2211    1121      1   112445555556666667777777777777643    334677788999999996 47


Q ss_pred             cc------CCchhhhhhhHHhhhhhhhhhh
Q 020873          286 RI------APSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       286 ~e------~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      +|      +.-..-+.|+.+++.+..++-+
T Consensus       311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  311 KEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            77      2334457888888887776543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.79  E-value=0.00011  Score=54.49  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          248 FFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      ..++.++..++|+.+.+.+=.+ ..+..+...+.+++++||++++.+++|..+++.|++.+...++
T Consensus        41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~  106 (110)
T PRK09541         41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            7889999999999998776555 5578888999999999999999999999999999999866443

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.79  E-value=2.2e-05  Score=65.14  Aligned_cols=133  Identities=15%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 020873          176 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA  255 (320)
Q Consensus       176 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~  255 (320)
                      .++.+++-++.|+..-....|..   ..|........+.+.++..+..++..+  .++...+..-+..|.+-.+++...+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~G---G~p~qQ~lGtT~GALifaiiv~~~~~p--~~T~~~~iv~~isG~~Ws~GQ~~Qf   77 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFG---GKPYQQTLGTTLGALIFAIIVFLFVSP--ELTLTIFIVGFISGAFWSFGQANQF   77 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecC---CChhHhhhhccHHHHHHHHHHheeecC--ccchhhHHHHHHhhhHhhhhhhhhh
Confidence            56788999999988777666542   334444444444445554444333221  2456667777778888899999999


Q ss_pred             Hhccccccccccchhh-hHHHHHHHHHHHHhccCCchhhh----hhhHHhhhhhhhhhhcCCc
Q 020873          256 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMYIGPE  313 (320)
Q Consensus       256 ~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~~~~~~----~G~~lii~g~~~~~~~~~~  313 (320)
                      +++++.+++++.++.. ++-+-+.+++++.++|..+..+.    +..++++.|+++..++++.
T Consensus        78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~  140 (288)
T COG4975          78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN  140 (288)
T ss_pred             hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence            9999999999999877 88999999999999999998874    5667888888888877653

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.64  E-value=0.00026  Score=62.34  Aligned_cols=142  Identities=17%  Similarity=0.260  Sum_probs=112.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHH-HHHHhhCCCCc------CCchhHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFM---VQSIPLFETVFMRCTVTLILSY-LWLRRSGQPIF------GPMHARNLL   76 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~---~~~~~~~~~~~~r~~~~~~~l~-~~~~~~~~~~~------~~~~~~~~~   76 (320)
                      +-+..|...+..+.+..+...++.|...   .+++++..+..+..-++...+. |+.........      ...-.....
T Consensus       159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~  238 (316)
T KOG1441|consen  159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL  238 (316)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH
Confidence            3567899999999999999999999887   3568999999999888888888 87654322211      111112223


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 020873           77 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL  148 (320)
Q Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~  148 (320)
                      ....++....+..-|..++++++-.-++....-=.++...++++++|+.++.+..|..+++.|+.+-.+...
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~  310 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL  310 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence            333466677778889999999999999998888888889999999999999999999999999999875543

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.59  E-value=0.00065  Score=52.74  Aligned_cols=128  Identities=15%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC---chhHHHHHHHHHHHHHHHHHH
Q 020873          177 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEVL  253 (320)
Q Consensus       177 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~~  253 (320)
                      .++++.+.+.-++...++.++.++..++....+.....+.+...+.....++....   +.+.|.+  .-|+++..--.+
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~--lGG~lG~~~V~~   80 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAY--LGGLLGVFFVLS   80 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHh--ccHHHHHHHHHH
Confidence            45677777777777777777665545577777777777777776665555443322   2222333  267888888888


Q ss_pred             HHHhccccccccccch-hhhHHHHHHHHHHH----HhccCCchhhhhhhHHhhhhhhh
Q 020873          254 LARGLQLEKTSKVANV-QYIEVALTQLWGMG----LSRIAPSFGRLVGCVLILVSVFY  306 (320)
Q Consensus       254 ~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l----~~~e~~~~~~~~G~~lii~g~~~  306 (320)
                      .....++.+++..... ..-|-+.+.+++.+    .-+++++..+.+|..+++.|+.+
T Consensus        81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            8889999999777654 45788899999986    33578999999999999998763

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.0014  Score=56.48  Aligned_cols=139  Identities=14%  Similarity=0.153  Sum_probs=118.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCCchhHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLR   79 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~   79 (320)
                      .++..|+.++...-+.=|..+...+... ...+++.++.+.-.++..+.-......++...      ...++.++.+++-
T Consensus       168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence            4667899999999999999988888766 46788999999998888888776655554321      2356778899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873           80 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  145 (320)
Q Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~  145 (320)
                      +.+++.++.+.|+-++.-++-.-+.+..+--++..+++.+.++++++..||+|+.+.+.|+.+=..
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence            999999999999999999888888899999999999999999999999999999999999876543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.49  E-value=0.00046  Score=49.73  Aligned_cols=60  Identities=20%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 020873           77 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALS  136 (320)
Q Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~  136 (320)
                      .....+...++.++..|+++.|.+.+..+. ....+.+.+.+.+++||++|..++.|+.+.
T Consensus        33 ~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   33 ILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            334457778889999999999999998765 589999999999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.48  E-value=0.00026  Score=62.49  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=86.1

Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCc-hhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-H
Q 020873          171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-F  248 (320)
Q Consensus       171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~  248 (320)
                      .+...|..+++.++++.+.+..+.|+-..+.+. .....                  ++ ..+...+..|.  .|+.. .
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~-~~~~l~~~~W~--~G~~~~~   61 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SG-GRSYLRRPLWW--IGLLLMV   61 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------ch-hhHHHhhHHHH--HHHHHHh
Confidence            457799999999999999999999984322111 00000                  00 00101111111  22222 5


Q ss_pred             HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          249 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       249 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      .+..+-+.|+...+++.++++..+..++..+++..++||+++..++.|+.+++.|..+....
T Consensus        62 ~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   62 LGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF  123 (300)
T ss_pred             cchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence            56677788999999999999999999999999999999999999999999999998876543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.37  E-value=0.00093  Score=49.06  Aligned_cols=63  Identities=19%  Similarity=0.119  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhccccccccc-cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          247 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      -..++++...++|+.|.+.+ +...-+..+.+.+.+++++||++++.+++|..+++.|++.+..
T Consensus        39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            38899999999999988654 4556688899999999999999999999999999999988754

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.00071  Score=49.21  Aligned_cols=64  Identities=25%  Similarity=0.077  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhccccccccc-cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873          247 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI  310 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~  310 (320)
                      -..++.+...++|+.+.+.+ +...-.-.+.+.+.+++++||+++..+++|..++++|++.+...
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            47889999999999888554 56667888999999999999999999999999999999887653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.32  E-value=0.0009  Score=49.42  Aligned_cols=63  Identities=19%  Similarity=0.025  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhccccccccc-cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873          246 LAFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM  308 (320)
Q Consensus       246 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~  308 (320)
                      +-..++++...++|+.|.+.+ +...-+..+.+.+.+++++||+++..+++|..+++.|++.+.
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            347899999999999988654 455567788899999999999999999999999999998763

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0041  Score=51.57  Aligned_cols=139  Identities=12%  Similarity=-0.002  Sum_probs=104.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCCchhHHHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRAL   81 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~   81 (320)
                      ...|.++.+++-.+=|.........- ...-+.-++.+...+.+.+.+..-+...++..      .+.+..++-+.+.++
T Consensus       170 ~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai  249 (337)
T KOG1580|consen  170 FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI  249 (337)
T ss_pred             cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            45688899999999888888876653 12223344445445555555444333333211      122455667788899


Q ss_pred             HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      .+.+++.+.+.-+.+-++-.-+++..+--+|+.+.+.++++.+++.+||+|.++.+.|...-...+
T Consensus       250 ~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G  315 (337)
T KOG1580|consen  250 ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG  315 (337)
T ss_pred             HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999987665444

>TIGR00803 nst UDP-galactose transporter

Probab=97.17  E-value=0.004  Score=52.64  Aligned_cols=135  Identities=11%  Similarity=0.084  Sum_probs=85.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHHHHhhCCCCcCC----chhHHHHHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMR-CTVTLILSYLWLRRSGQPIFGP----MHARNLLVLRALV   82 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r-~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~   82 (320)
                      +...|..+.+.+..+-+......++...++-..+...... .....+................    .+.........+.
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence            3456666677777777788888877652221111111111 1122121111111111111000    1112233444566


Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 020873           83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF  142 (320)
Q Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l  142 (320)
                      ......+....+++.++...+....+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            677778899999999999999999999999999999999999999999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.025  Score=44.07  Aligned_cols=134  Identities=16%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC--chhHHHHHHHHHHHHHH
Q 020873           10 YSGLMCMALSSTIYFFMQVISDVFMVQSI-PLFETVFMRCTVTLILSYLWLRRSGQPIFGP--MHARNLLVLRALVGFLS   86 (320)
Q Consensus        10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~-~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   86 (320)
                      ...+++.+++..+-.....+.-... +.. +|....+..+..+..++..+...+.+.+...  ++..++.+.+|+++...
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~   82 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF   82 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence            4556777888888777777776665 444 5999999999988877776655433322221  33445667777777777


Q ss_pred             HHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHh----cCcCcHHHHHHHHHHHHHHHHhh
Q 020873           87 LFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIIL----REKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        87 ~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l----~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      -........+.+++....+ ..-+-+...++-.+=.    +++++..+++|+++.++|+.+..
T Consensus        83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            6666777777777777665 3444444444443322    47899999999999999955543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.07  E-value=0.0014  Score=47.16  Aligned_cols=54  Identities=17%  Similarity=0.030  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhccccccccccc-hhhhHHHHHHHHHHHHhccCCchhhhhhhHHh
Q 020873          247 AFFAEVLLARGLQLEKTSKVAN-VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI  300 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~li  300 (320)
                      -..++.++.+++|+.+.+.+=+ ...+..+...+.+.+++||++|..++.|..+|
T Consensus        39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3888999999999999988854 45689999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.03  E-value=0.0082  Score=46.73  Aligned_cols=133  Identities=11%  Similarity=-0.013  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCc----hhHHHHHHHHHHHHHH
Q 020873          174 MLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS----FYSFLLMLVLSILAFF  249 (320)
Q Consensus       174 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~  249 (320)
                      ....+.++.+.++-.......-++.+...+|....+.....+...+.......++...++    ...|.+  .-|+++.+
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~--~GG~lGa~   81 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAW--IGGLLGAI   81 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHH--Hccchhhh
Confidence            456777888888888888877777665566777777777777766665555433322221    122333  23455544


Q ss_pred             HHHHHHHhcccccc-ccccchhhhHHHHHHHHHHHHhc----cCCchhhhhhhHHhhhhhhhhh
Q 020873          250 AEVLLARGLQLEKT-SKVANVQYIEVALTQLWGMGLSR----IAPSFGRLVGCVLILVSVFYTM  308 (320)
Q Consensus       250 ~~~~~~~a~~~~~~-~~~s~~~~~~pv~~~~~~~l~~~----e~~~~~~~~G~~lii~g~~~~~  308 (320)
                      --..-.....+.++ ........-|-+.+++++-+=+.    .+++..++.|..+++.|+++..
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            44444455566665 44556667888888888876553    5789999999999999954443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.95  E-value=0.0022  Score=54.93  Aligned_cols=80  Identities=16%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          233 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       233 ~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      ++.+......-+++-.+.+.+.+.++++.+|+....+..+..+++.+++++++|++++..||.+..+.+.|+.+......
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            34455555666777789999999999999999999999999999999999999999999999999999999998876543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.92  E-value=0.013  Score=50.23  Aligned_cols=180  Identities=11%  Similarity=0.069  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Q 020873           12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV   91 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (320)
                      |++++++|++++|++.+-.|..  +..|++.+-++......+.-+.+...++.+     +..++.+++|...+.++.+-.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~v   73 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVV   73 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeeh
Confidence            5788999999999999999974  455777777666655555544444444432     345677889999999999999


Q ss_pred             HHHhcCCccchhhhhhhhHHHHHH-HHHH-HhcC-----cCcHHHHHHHHHHHHHHHHhhcccccccc-----ccCCc-c
Q 020873           92 YSIQRLPLSQATVLSFTAPIMASI-AARI-ILRE-----KLKIAEIGGLALSFFGVLFIFRRILTTQA-----VSGGL-V  158 (320)
Q Consensus        92 ~a~~~~~~~~a~~l~~~~Pi~~~l-l~~~-~l~e-----~~~~~~~~g~~l~~~Gv~li~~~~~~~~~-----~~~~~-~  158 (320)
                      -.++.++.+....+.++.-+++-- .+++ ++++     +-+....+|+.++++|..+....+....+     +.... .
T Consensus        74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~  153 (254)
T PF07857_consen   74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI  153 (254)
T ss_pred             hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence            999999999999998775555433 3333 3432     23456789999999998876543222100     00000 0


Q ss_pred             CCC---ccc---c-c-cc-----cCchhHHHHHHHHHHHHHhHHHHHHhhhcc
Q 020873          159 KPG---EAI---S-L-NV-----RGSDHMLAVLVGLFSSITGGISYCLIKAGA  198 (320)
Q Consensus       159 ~~~---~~~---~-~-~~-----~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~  198 (320)
                      ++.   +++   . + +.     ..+.+..|..+++.+++.|+...+=.++..
T Consensus       154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~  206 (254)
T PF07857_consen  154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQ  206 (254)
T ss_pred             ccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHH
Confidence            100   000   0 0 00     112478899999999999988777555543

The region concerned is approximately 280 residues long.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.92  E-value=0.019  Score=50.98  Aligned_cols=142  Identities=13%  Similarity=0.005  Sum_probs=103.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhc-C--CCCHHHHHHHHHHHHHHHHHHHHH---hhCCCC---cCCchhHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMV-Q--SIPLFETVFMRCTVTLILSYLWLR---RSGQPI---FGPMHARNLLVL   78 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~-~--~~~~~~~~~~r~~~~~~~l~~~~~---~~~~~~---~~~~~~~~~~~~   78 (320)
                      +...|-+++++++++||..-+..|+-.. +  .++--.+.-+-.++..++++|.++   ..++.+   +...+.....+.
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            3478999999999999999999987652 2  345444555555667777765433   223221   222333334444


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 020873           79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT  149 (320)
Q Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~  149 (320)
                      ..+..+++-+++..|.-.+++-.+++-..++-...++.-.++-++++++..++|.+..++|.+++..++..
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~  394 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN  394 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence            55566799999999999999999998877776677777777778999999999999999999999877643

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.34  E-value=0.0087  Score=44.34  Aligned_cols=107  Identities=19%  Similarity=0.126  Sum_probs=74.7

Q ss_pred             HHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHH-HHHHHHHHHHHhccc
Q 020873          182 FSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSI-LAFFAEVLLARGLQL  260 (320)
Q Consensus       182 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~~~~~~~~~~~a~~~  260 (320)
                      +.++.|+..+-+.|+..+..++.....  +..-....              -..+|.+.+  .. ++..+-..|++.+.+
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~--------------Ll~n~~y~i--pf~lNq~GSv~f~~~L~~   64 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF--------------LLLNPKYII--PFLLNQSGSVLFFLLLGS   64 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH--------------HHHhHHHHH--HHHHHHHHHHHHHHHHhc
Confidence            346788888898988665433333221  11111111              012233322  32 357788889999999


Q ss_pred             cccccccchh-hhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873          261 EKTSKVANVQ-YIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY  306 (320)
Q Consensus       261 ~~~~~~s~~~-~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~  306 (320)
                      .+.+.+.++. .+.-+++++.++++.+|..+...++|+.+++.|+.+
T Consensus        65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            9999999984 899999999999888888888899999999999865

Many members are annotated as potential transmembrane proteins.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0026  Score=55.27  Aligned_cols=126  Identities=17%  Similarity=0.199  Sum_probs=91.2

Q ss_pred             cCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-
Q 020873          169 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-  247 (320)
Q Consensus       169 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-  247 (320)
                      .+.++..|.++++.+.+.-+...++.||..++.. .          +       ....++...+....  ...+.|++. 
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~----------~-------~~ra~~gg~~yl~~--~~Ww~G~ltm   74 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A----------S-------GLRAGEGGYGYLKE--PLWWAGMLTM   74 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h----------h-------cccccCCCcchhhh--HHHHHHHHHH
Confidence            3456788999999999998888888887432211 0          0       00001101111111  222456665 


Q ss_pred             HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873          248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK  314 (320)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~  314 (320)
                      .++...-+.|....+++.++++..++.+.+.+++..+++|+++....+|+.+.++|...+....+++
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e  141 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE  141 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence            7788888888889999999999999999999999999999999999999999999988887665444

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.082  Score=46.18  Aligned_cols=140  Identities=11%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--------cCCchhHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FGPMHARNLLVLR   79 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~   79 (320)
                      +..|+..+....+.-+......|.-. ..+.+-+.+.++..+.+.+.+.......++..        ......+..+.++
T Consensus       155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence            34588899999999888888888765 46678889999999999988887765554311        1123445678889


Q ss_pred             HHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 020873           80 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL  148 (320)
Q Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~  148 (320)
                      +++++.-..+-+.+.+..++...++.....-..+.+...++.+++.++...+|+.+++.|-++-.+...
T Consensus       235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~  303 (314)
T KOG1444|consen  235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF  303 (314)
T ss_pred             HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence            999999999999999999998888888666677777777777899999999999999999988776653

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=95.59  E-value=0.068  Score=47.29  Aligned_cols=143  Identities=12%  Similarity=0.048  Sum_probs=93.8

Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCc----ccCchhHHHHHHHHH
Q 020873          171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLF--FFEEF----VLPSFYSFLLMLVLS  244 (320)
Q Consensus       171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~l~~~g  244 (320)
                      ..-..|+++..+++++.+.+++=.||..+  -+-+..-..+.+.+-++......  ..++.    ...+.+.+......|
T Consensus         3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G   80 (344)
T PF06379_consen    3 SAIILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG   80 (344)
T ss_pred             chHHHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence            34678999999999999999998888543  22233333344444333322211  11221    122445677778889


Q ss_pred             HHHHHHHHHHHHhccccccccccc-hhhhHHHHHHHHHHHHhcc-------CCchhhhhhhHHhhhhhhhhhhcCCccc
Q 020873          245 ILAFFAEVLLARGLQLEKTSKVAN-VQYIEVALTQLWGMGLSRI-------APSFGRLVGCVLILVSVFYTMYIGPEKE  315 (320)
Q Consensus       245 i~~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~~~~~l~~~e-------~~~~~~~~G~~lii~g~~~~~~~~~~~~  315 (320)
                      ++-.++-..|-.+++|.+.+.... ..-+.-+++.++--++.|+       +-....++|..+.+.|+.+..+...+|+
T Consensus        81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke  159 (344)
T PF06379_consen   81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE  159 (344)
T ss_pred             HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence            999999999999999999877654 3446677777776555442       2223568999999999998877544443

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.85  E-value=0.2  Score=41.50  Aligned_cols=136  Identities=9%  Similarity=0.071  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CC-----cCCchhHHHHHHHHHHHH
Q 020873           12 GLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PI-----FGPMHARNLLVLRALVGF   84 (320)
Q Consensus        12 g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~   84 (320)
                      |++.+..-++.-+..-...|.-. ..+..-++..++.-+.+.+++..+.....+ ++     ..+.+....+++.|++.+
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv  235 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV  235 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence            44455555554444444455432 245567888999999999998887654332 21     123445567889999999


Q ss_pred             HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      .-..|--+.++-++.+.-+.+..+.-.-..+.+.++++|+.++..+.++++++...++-....
T Consensus       236 giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak  298 (309)
T COG5070         236 GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999888888889999999999999999999999998777665443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.48  E-value=1.8  Score=38.66  Aligned_cols=66  Identities=12%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873          244 SILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY  309 (320)
Q Consensus       244 gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~  309 (320)
                      +++-.+-+-+++.++.+.+++.......+....+.++..++++++++..||...++...|+.+...
T Consensus        99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen   99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            333355556999999999999999999999999999999999999999999999999999999884

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.19  E-value=0.62  Score=39.91  Aligned_cols=139  Identities=12%  Similarity=0.151  Sum_probs=106.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-------cCCchhHHHHHHHH
Q 020873            9 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-------FGPMHARNLLVLRA   80 (320)
Q Consensus         9 ~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~   80 (320)
                      +..|+.+.-.|-++=+.-.-+...+. ..+-+..+++++.+.++.+++...+...++-.       ..+.+.....++-+
T Consensus       188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s  267 (367)
T KOG1582|consen  188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS  267 (367)
T ss_pred             ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH
Confidence            45777777777777676666665543 23445688889999888888877766655421       12344455667777


Q ss_pred             HHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           81 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      +.+.++......-++.-++..+..+...---.|.+++.+++.++++.....+.++.+.|+++=.+++
T Consensus       268 ~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  268 LAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            7777777777777778888888888888889999999999999999999999999999999988776

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=93.77  E-value=1.3  Score=32.08  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHH
Q 020873           15 CMALSSTIYFFMQVISDVFMVQSIP------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF   88 (320)
Q Consensus        15 ~~~la~~~~~~~~~~~k~~~~~~~~------~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (320)
                      -++..+++||..+++.|... .+.+      .....+.|-.-...+                 .|.+.+. .+..-.+..
T Consensus         7 ~lvaVgllWG~Tnplirrgs-~g~~~v~~~~~k~~~~lqe~~tl~l-----------------~w~Y~iP-FllNqcgSa   67 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRGS-LGWDKVKSSSRKIMIALQEMKTLFL-----------------NWEYLIP-FLLNQCGSA   67 (125)
T ss_pred             HHHHHHHHHccccHHHHHHH-hhHhhccCchHHHHHHHHHHHHHHH-----------------hHHHHHH-HHHHHhhHH
Confidence            35677889999999999876 3322      122222222111110                 1122222 233345567


Q ss_pred             HHHHHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873           89 SFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF  144 (320)
Q Consensus        89 ~~~~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~  144 (320)
                      +||.-+++.|.+.++.+.+ ++-.++.+.+..+-.|...++.++|..+.+.|+.+..
T Consensus        68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            8899999999999999865 5667788888764445566677899999999987653

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.34  E-value=0.041  Score=44.56  Aligned_cols=65  Identities=11%  Similarity=0.016  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      ..+++.|..++++++++.++.+..-+..|..+++++.+|+++...+++..++.+.|++...+.++
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence            45778899999999999999999999999999999999999999999999999999988876543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=92.55  E-value=3.8  Score=35.95  Aligned_cols=140  Identities=18%  Similarity=0.212  Sum_probs=86.9

Q ss_pred             cccCc--chhHHHHHHHHHHHHHHHHHHHHHhhc-CC---CCHHHHHHHHHHHHHHHHHHHH-HhhCCCCc---------
Q 020873            4 VWNGS--RYSGLMCMALSSTIYFFMQVISDVFMV-QS---IPLFETVFMRCTVTLILSYLWL-RRSGQPIF---------   67 (320)
Q Consensus         4 ~~~~~--~~~g~~~~~la~~~~~~~~~~~k~~~~-~~---~~~~~~~~~r~~~~~~~l~~~~-~~~~~~~~---------   67 (320)
                      .|++.  ...|..+...+.++-|.-+.+.++... ++   -+|+...+--.-...+.+++.. ...|....         
T Consensus       155 t~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~  234 (349)
T KOG1443|consen  155 TYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQ  234 (349)
T ss_pred             EecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhc
Confidence            34443  357888888898888888888877662 11   2455555544444444444443 33332111         


Q ss_pred             CCchhHH---HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873           68 GPMHARN---LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI  143 (320)
Q Consensus        68 ~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li  143 (320)
                      ++...++   .+.++|...+..-.+-+.=+..++.-..++..----+.+.+++.++.+|+++...|.|..++..|+..=
T Consensus       235 d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  235 DTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            1111222   222333333333333345555666666666666677889999999999999999999999999999876

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.53  E-value=0.23  Score=42.48  Aligned_cols=139  Identities=13%  Similarity=0.096  Sum_probs=101.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhhCC-------CCcCCchhHHHHHH
Q 020873            8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSI--PLFETVFMRCTVTLILSYLWLRRSGQ-------PIFGPMHARNLLVL   78 (320)
Q Consensus         8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~--~~~~~~~~r~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~   78 (320)
                      -...|+++.+++.+.-+.+.+..|... +..  .-+.+.++..+.+.++.+|.+...++       +.....+.|..+.+
T Consensus       182 ls~~GvifGVlaSl~vAlnaiytkk~l-~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL  260 (347)
T KOG1442|consen  182 LSWIGVIFGVLASLAVALNAIYTKKVL-PPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL  260 (347)
T ss_pred             cchhhhHHHHHHHHHHHHHHHhhheec-ccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence            356899999999999999999999655 222  35778899999999999988776553       12234455667777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      +|++++.....-..-+|-++|-.-.+-...-..--.+++..+++|..+...|-+-++.+.|-..-.+.+
T Consensus       261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            888777555554555555555444443334445556788899999999999999999999987776554

>PRK02237 hypothetical protein; Provisional

Probab=91.11  E-value=1  Score=32.77  Aligned_cols=46  Identities=24%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          267 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       267 s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      +.+.-.-.+.++++++..-|++|+..+++|..+.+.|..++.+.+|
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            4566677888999999999999999999999999999988766543

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=88.60  E-value=0.66  Score=39.82  Aligned_cols=129  Identities=11%  Similarity=0.036  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 020873          176 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA  255 (320)
Q Consensus       176 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~  255 (320)
                      |.+.++.|+++++...+=.||...  .+.....++++....+...+.....+.   |  .-+++..+-|.+-..++.+-.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~--gDg~~fQw~~~~~i~~~g~~v~~~~~~---p--~f~p~amlgG~lW~~gN~~~v   73 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDT--GDGFFFQWVMCSGIFLVGLVVNLILGF---P--PFYPWAMLGGALWATGNILVV   73 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccC--CCcHHHHHHHHHHHHHHHHHHHHhcCC---C--cceeHHHhhhhhhhcCceeeh
Confidence            457788999999999988888643  345666666665555554444333221   1  122333334555566666767


Q ss_pred             Hhccccccccccchhh-hHHHHHHHHHHH-HhccCC-----chhhhhhhHHhhhhhhhhhhcC
Q 020873          256 RGLQLEKTSKVANVQY-IEVALTQLWGMG-LSRIAP-----SFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       256 ~a~~~~~~~~~s~~~~-~~pv~~~~~~~l-~~~e~~-----~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      -.+|.+|-...-.+=. .+.+.+-..+-+ +||+++     ....++|.++++.|..+...-|
T Consensus        74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence            7777777666554433 466666665543 455432     3457899999999988776543

The region concerned is approximately 280 residues long.

>PRK02237 hypothetical protein; Provisional

Probab=87.27  E-value=5.1  Score=29.27  Aligned_cols=47  Identities=9%  Similarity=-0.031  Sum_probs=35.4

Q ss_pred             ccchhhhhh-hhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873           99 LSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  145 (320)
Q Consensus        99 ~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~  145 (320)
                      .+.+-.-+. ..-+...+-.+.+-|+||++..++|..++++|+.++..
T Consensus        58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~  105 (109)
T PRK02237         58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY  105 (109)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence            444443332 44455557788899999999999999999999988753

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=86.86  E-value=13  Score=32.33  Aligned_cols=137  Identities=13%  Similarity=0.138  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHH---------hhCCCCcCC-c-hhHHHHH
Q 020873           10 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLR---------RSGQPIFGP-M-HARNLLV   77 (320)
Q Consensus        10 ~~g~~~~~la~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~~~l~~~~~---------~~~~~~~~~-~-~~~~~~~   77 (320)
                      ..|+.+..++.+.-+...+..+...+ .+=++-+..++......+.++....         ++.++...+ . -..+...
T Consensus       163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~  242 (330)
T KOG1583|consen  163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW  242 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence            46777777888877878877765542 3457889999998887776654321         111110000 0 0012222


Q ss_pred             HHHHHHHHHHHHHHHH----HhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873           78 LRALVGFLSLFSFVYS----IQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  146 (320)
Q Consensus        78 ~~~~~~~~~~~~~~~a----~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~  146 (320)
                      .--++.++.+..-..+    -...++-++++...+-=.+..+++.+.++.++++..|+|..+.+.|..+-...
T Consensus       243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2223334333332222    22345555566677788899999999999999999999999999999887543

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=86.68  E-value=1.9  Score=31.38  Aligned_cols=46  Identities=20%  Similarity=0.323  Sum_probs=39.5

Q ss_pred             cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          267 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       267 s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      +.+.-.-.+.+.++++.+-|++|+..+++|..+.+.|..++.+.+|
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            4556677888999999999999999999999999999988776544

; GO: 0016020 membrane

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=82.50  E-value=3.9  Score=29.78  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=38.6

Q ss_pred             HhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873           94 IQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR  146 (320)
Q Consensus        94 ~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~  146 (320)
                      +|-.+.+.+-.-+ ...-+...+-.+.+-|+||++..++|..++++|+.++...
T Consensus        51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~  104 (107)
T PF02694_consen   51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA  104 (107)
T ss_pred             cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence            3444444444333 2455566677888999999999999999999999888644

; GO: 0016020 membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=81.92  E-value=3.1  Score=35.53  Aligned_cols=136  Identities=13%  Similarity=0.028  Sum_probs=87.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC-Cch-hHHHHHHHHHHHH
Q 020873            7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG-PMH-ARNLLVLRALVGF   84 (320)
Q Consensus         7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~   84 (320)
                      .+..+|-+++++.+.+++.+++.-.+.. ++.|-.++...-.++++++-.......+++... .++ .....+...++.+
T Consensus       162 snp~~GD~lvi~GATlYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MF  240 (336)
T KOG2766|consen  162 SNPVKGDFLVIAGATLYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMF  240 (336)
T ss_pred             CCCccCcEEEEecceeeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHH
Confidence            4567899999999999999999999887 899999999888888888888775544433221 121 1111111222222


Q ss_pred             HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873           85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR  145 (320)
Q Consensus        85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~  145 (320)
                      +-+.+.=.-++..+++...+-.-++-++..++  ..++-+.++.-.++......|.++-..
T Consensus       241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            22222222334444443333334455666665  567888999999999999999877643

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=81.71  E-value=3.5  Score=29.90  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhh
Q 020873          247 AFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT  307 (320)
Q Consensus       247 ~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~  307 (320)
                      +-.+-.+|+.-+++.+.+.+.++.+ +...++.+.+..+-.|...-..+.|..+++.|+.+.
T Consensus        62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence            4556667777888999988887765 678889999987666677788899999999998764

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=80.12  E-value=5.1  Score=28.96  Aligned_cols=46  Identities=15%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873          267 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP  312 (320)
Q Consensus       267 s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~  312 (320)
                      +...-.-.+.+.++.+..-|..|+.++++|..+.+.|..++...++
T Consensus        62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR  107 (109)
T COG1742          62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR  107 (109)
T ss_pred             HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence            4556677888899999999999999999999999988776665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.92
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.91
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.9
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.84

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.92  E-value=3.5e-08  Score=72.59  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      .+...++...++.++..++++.|.+.+..+ ..+.|+++.+++++++|||+++.+++|+.+.+.|++++...+
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            356667778999999999999999999998 789999999999999999999999999999999999986543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.91  E-value=1.6e-09  Score=82.64  Aligned_cols=69  Identities=19%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             HHHH-HHHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          243 LSIL-AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       243 ~gi~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      .+++ ..+++++|.+++|+.+++++.++ ..+.|+++.+++++++||+++..+++|+.+|+.|+++....+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4544 48999999999999999999999 899999999999999999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.90  E-value=2.6e-09  Score=81.48  Aligned_cols=71  Identities=20%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873           77 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI  147 (320)
Q Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~  147 (320)
                      +++.++..+++.++.+++++.|++.+..+ ..+.|+++.+++++++||++++.+++|+.+.++|++++...+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            56677788999999999999999999998 899999999999999999999999999999999999987654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.84  E-value=4e-08  Score=72.25  Aligned_cols=69  Identities=19%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             HHHH-HHHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873          243 LSIL-AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG  311 (320)
Q Consensus       243 ~gi~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~  311 (320)
                      .++. ...++.++.+++|+.+.+.+.++ ..+.|+++.+++++++||+++..+++|..+++.|++.....+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4444 48999999999999999999988 899999999999999999999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00