Citrus Sinensis ID: 020876

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Protein Sequence
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccEEcHHHHHHHHHHccccEEEEEEccccccEEEEccccccccccccccEEEEEccccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccHHHHHHHHHHHHcccccccccccccccccccccHHHccccccEEEccccccccccccHHHEHcccccccccccccccccccEcccccccccccccccHHHHcccccHHHcccccccccccccccccccccccEEEEHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccccEEEEEEccccccHHccccccc
Coil and Loop (DISEMBL)
mlgvlcarhkpwilnSISLLahgsfaahhqnrfvyspihvqsperrrhhstacrlgvgggglsvgggaasiwhailpsdgcsgcrrrrngrrkpgegswnaasderparwLHRADSAWLLFGVCsclapieywtdsndsnpetvtFYEEKiskidgggggddlnvkrceiinerpfkvtgvlaDGRCLFRAIAHGaclrsgeevpdeeRQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIqqpyvwggepelLMASHVLKKPIAVFMVVQSSgnlvnianygeeyqkdkespinvlfhgyghydiletfseqk
Flexible Loop (DISEMBL)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAilpsdgcsgcRRRRNgrrkpgegswnaasderparWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKIskidgggggddLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGaclrsgeevpdEERQRELADELRAQVVDELLkrrketewfiegdfdtyVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Low Complexity Region (SEG)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRlgvgggglsvgggaasIWHAILPSDgcsgcrrrrngrrkpgegSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIdgggggddLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Disordered region (IsUnstruct)
**GVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQ*******HSTACRLGVGGGGLSVGGGAASIWHAILPSDGCS*************************ARWLHRADSAWLLFGVCSCLAPIEYWTD*******************************RCEIINERPFKVTGVLADGRCLFRAIAHGACLR*******************AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET*****
Disordered Region (DISOPRED)
*LGV***RHKPWILNSISLLA***************************************************************************************************F*************************************************INERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG**YQKDKESPINVLFHGYGHYDILETFS***
Disordered Region (DISEMBL)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQ*********TACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRR********************PARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRS************LADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Disordered Region (DISPRO)
*LGVLCARHKPWILNSISLLAHGSFA*H****FVYSPIHVQSPE***HHSTACRLGVGGGGLSVGGGAASIWHAILPSD************************DERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	320	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	yes	no	0.425	0.429	0.623	3e-49
Q6GM06	294	OTU domain-containing pro	N/A	no	0.415	0.452	0.283	1e-08
B2RRE7	1107	OTU domain-containing pro	yes	no	0.356	0.102	0.278	2e-07
Q01804	1113	OTU domain-containing pro	yes	no	0.356	0.102	0.278	3e-07
Q5M8L0	294	OTU domain-containing pro	no	no	0.446	0.486	0.288	1e-06
Q7ZV00	293	OTU domain-containing pro	no	no	0.456	0.498	0.283	2e-06
Q7L8S5	288	OTU domain-containing pro	yes	no	0.406	0.451	0.299	6e-05
P38747	307	OTU domain-containing pro	yes	no	0.425	0.442	0.287	9e-05
Q6IE21	290	OTU domain-containing pro	no	no	0.403	0.444	0.287	0.0001
P22856	867	Putative ubiquitin thioes	N/A	no	0.368	0.136	0.287	0.0002

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score =  195 bits (496), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 110/138 (79%), Gaps = 2/138 (1%)

Query: 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
           + + G+  DGRCLFR++AHG CLRSG+  P E+ QRELADELR +V DE ++RR+ETEWF
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWF 227

Query: 236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKD 295
           +EGDFDTYV++I+ P+VWGGEPEL MASHVL+ PI V+M    +G L++IA YG+EY KD
Sbjct: 228 VEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKD 287

Query: 296 KESPINVLFHGYGHYDIL 313
              PI VL+HG+GHYD L
Sbjct: 288 --DPIRVLYHGFGHYDAL 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)

Query: 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 225
           K  +I+ ER  ++  + +DG C++RAI H           +E+        LR+Q  D +
Sbjct: 140 KLAQILAERELQIRQIPSDGHCMYRAIEHQL---------NEQGNSLTVANLRSQTADYM 190

Query: 226 LKRRKET----------EWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMV 275
            KR ++           + + + +F  Y  +I     WGG+ EL   SH+LK PI    V
Sbjct: 191 QKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIE---V 247

Query: 276 VQSSGNLVNIANYGEEYQKDKESPINVLF--HGYG---HYDILETF 316
           +Q+    + I   GEEY      PI +++  H YG   HY+ +E  
Sbjct: 248 IQAESLPIVI---GEEYSN---KPITLVYMRHAYGLGEHYNSVEQL 287

Xenopus laevis (taxid: 8355)

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 240
           V  DG CLFRA+A          V           E+R   +  L + R++ E FIEG F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIRYLRENREKFEAFIEGSF 87

Query: 241 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 300
           + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct: 88  EEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVSPSHVTENNFPEK--------V 139

Query: 301 NVLFHGYGHYDIL 313
            + F    HYDI+
Sbjct: 140 LLCFSNGNHYDIV 152

Mus musculus (taxid: 10090)

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 19/133 (14%)

Query: 181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 240
           V  DG CLFRA+A          V           E+R   +  L + R++ E FIEG F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIHYLRENREKFEAFIEGSF 87

Query: 241 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 300
           + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct: 88  EEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEK--------V 139

Query: 301 NVLFHGYGHYDIL 313
            + F    HYDI+
Sbjct: 140 LLCFSNGNHYDIV 152

Homo sapiens (taxid: 9606)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 225
           K   I+ ER  ++  + +DG C++RAI H    R G ++     + + AD ++    D L
Sbjct: 140 KLARILAERELQIRQIPSDGHCMYRAIEHQLRER-GNDLTVANLRSQTADYMQNHAEDFL 198

Query: 226 --LKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLV 283
             L      + + + +F  Y  +I     WGG+ EL   SH+LK  I    V+Q+  + +
Sbjct: 199 PFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIE---VIQAESSPI 255

Query: 284 NIANYGEEYQKDKESPINVLFHGYG---HYDILETF 316
            I   GEEY   K   +  + H YG   HY+ +E  
Sbjct: 256 VI---GEEY-SSKAITLVYMRHAYGLGEHYNSVELL 287

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDE 224
           +K  E + ER  ++  + +DG C++RA+ H    R G  +  +E + + A  +R+   D 
Sbjct: 136 LKLREKLVERHLQIKEISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDF 194

Query: 225 L--LKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNL 282
           +  L      + +   +F+ Y  ++     WGG+ EL   S VL+ PI    V+Q+    
Sbjct: 195 MPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIE---VIQADSPC 251

Query: 283 VNIANYGEEYQKDKESPINVLFHGYG---HYDILETFSE 318
           + I   GEEY K K + I  + H YG   HY+ +E   +
Sbjct: 252 ITI---GEEYDKPKITLI-YMRHAYGLGEHYNSVEPLKD 286

Danio rerio (taxid: 7955)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 17/147 (11%)

Query: 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 225
           K   I+  R  ++  + ADG C++RAI          E+      R        + VDE 
Sbjct: 131 KLAAILGARGLEMKAIPADGHCMYRAIQDQLVFSVSVEM-----LRCRTASYMKKHVDEF 185

Query: 226 L---KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNL 282
           L      + ++ F   DF  Y   I +   WGG+ EL   SHVLK PI    V+Q+    
Sbjct: 186 LPFFSNPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIE---VIQADSPT 242

Query: 283 VNIANYGEEYQKDKESPINVLFHGYGH 309
           + I   GEEY K    PI +++  Y +
Sbjct: 243 LII---GEEYVK---KPIILVYLRYAY 263

Homo sapiens (taxid: 9606)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 17/153 (11%)

Query: 168 CEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEE----RQRELADELRAQVVD 223
           CE+   +  K   +  DG CLF +I     LR   +  D++    + R L+     +  D
Sbjct: 162 CEL---KKLKQFDIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRD 218

Query: 224 ELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLV 283
           + +    + E     D D Y KE++    WGGE E+L  SHV   PI++ M    SG  +
Sbjct: 219 DFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM----SGRPI 274

Query: 284 NIANYGEEYQKDKESPINVLFHGYG---HYDIL 313
            + N   E  K+ E  +    H Y    HY+ L
Sbjct: 275 QVYN---ECGKNPELKLVYYKHSYALGEHYNSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 225
           K   I+  +  ++  + ADG C++RAI           V  E  +   A  +R  + D+ 
Sbjct: 132 KVAAILGAKNLEMKTIPADGHCMYRAIQDQLVF----SVTIESLRYRTAYYMRKHI-DDF 186

Query: 226 LKRRKETE---WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNL 282
           L    E E   ++   DF  Y  +I     WGG+ EL   SHVL+ PI    VVQ++   
Sbjct: 187 LPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIE---VVQANSPT 243

Query: 283 VNIANYGEEYQKDKESPINVLFHGYG 308
           + I   GEEY +    P+ +++  Y 
Sbjct: 244 IVI---GEEYTR---KPVTLVYLHYA 263

Mus musculus (taxid: 10090)

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 28/146 (19%)

Query: 156 GGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELAD 215
           GG    DL +    +   R +KV  V  DG CLFRA+  G  LR  + +      +   +
Sbjct: 590 GGNADRDLEI----LARRRGYKVIPVKGDGNCLFRAV--GKSLRLNQNI------KYSHE 637

Query: 216 ELRAQVVDELLKRRKETEWFIE-----GD---------FDTYVKEIQQPYVWGGEPELLM 261
           +LRAQVV  L   ++  E ++E     GD          + Y+K I +P  WG    L +
Sbjct: 638 DLRAQVVTYLTSHKEFLEPYLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRV 697

Query: 262 ASHVLKKPIAVFMVVQSSGNLVNIAN 287
            S +LK  +   +++ ++ N   I+N
Sbjct: 698 LSEILK--VKFNLLILNTRNFQVISN 721

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
449449405	313	PREDICTED: OTU domain-containing protein	0.934	0.955	0.625	1e-104
296090402	317	unnamed protein product [Vitis vinifera]	0.928	0.936	0.623	1e-100
224113207	318	predicted protein [Populus trichocarpa]	0.95	0.955	0.634	6e-96
359486932	380	PREDICTED: uncharacterized protein LOC10	0.793	0.668	0.658	7e-94
224097684	326	predicted protein [Populus trichocarpa]	0.962	0.944	0.618	2e-89
356535547	296	PREDICTED: uncharacterized protein LOC10	0.912	0.986	0.594	2e-88
356576317	294	PREDICTED: OTU domain-containing protein	0.909	0.989	0.598	1e-87
84468350	326	hypothetical protein [Trifolium pratense	0.925	0.907	0.538	1e-83
255580118	185	cysteine-type peptidase, putative [Ricin	0.428	0.740	0.868	2e-64
148907480	411	unknown [Picea sitchensis]	0.843	0.656	0.401	6e-62

>gi|449449405|ref|XP_004142455.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi|449520841|ref|XP_004167441.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/326 (62%), Positives = 239/326 (73%), Gaps = 27/326 (8%)

Query: 1   MLGVLCARHKPWILNSISLLAHGSFAAHHQNR----FVYSPIHVQSPERRRHHSTACRLG 56
           MLGVLCAR KPWIL S+S   HGS   HH +      V SPI  Q   R+RHHS+AC+L 
Sbjct: 1   MLGVLCARPKPWILVSLSNFIHGSAVYHHHHHQSRLLVQSPI--QFDRRQRHHSSACKLA 58

Query: 57  VGGGGLSVGGGAASIWHAILPSDGCSG---CRRRRNGRRKPGEGSWNAASDERPARWLHR 113
                   GGGAASIWHAI+PS   S    CR   +   + GEGSWN A D RPARWLHR
Sbjct: 59  --------GGGAASIWHAIMPSGAGSSSNLCRPAIHCHERKGEGSWNVAWDARPARWLHR 110

Query: 114 ADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINE 173
            DSAWLLFGVC+C+AP++ W D++    E V+  ++K    +  G   + N +     + 
Sbjct: 111 PDSAWLLFGVCACIAPLD-WVDASH---EAVSL-DQKKEVCESSGPEFNQNDE-----SS 160

Query: 174 RPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE 233
             ++VTGVLADGRCLFRAIAHGACLRSGEE PD++RQRELADELRA+VVDELLKRRKETE
Sbjct: 161 ADYRVTGVLADGRCLFRAIAHGACLRSGEEAPDDDRQRELADELRAKVVDELLKRRKETE 220

Query: 234 WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQ 293
           W+IEGDFD YVK IQQP+VWGGEPELLMASHVLK PI+VFM  +SS  L+NIA YG+EYQ
Sbjct: 221 WYIEGDFDAYVKRIQQPFVWGGEPELLMASHVLKTPISVFMRERSSDGLINIAKYGQEYQ 280

Query: 294 KDKESPINVLFHGYGHYDILETFSEQ 319
           K +ESPINVLFHGYGHYDILET S++
Sbjct: 281 KGEESPINVLFHGYGHYDILETSSDK 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090402|emb|CBI40221.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/332 (62%), Positives = 239/332 (71%), Gaps = 35/332 (10%)

Query: 1   MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVY----SPIHVQ---SPERRRHHSTAC 53
           MLGVLCARHKPWIL ++S + HGS   HH +   +    +PI         RRRHHS AC
Sbjct: 1   MLGVLCARHKPWILATLSFV-HGSATHHHLHLNHHHLLGTPIQFNGGGDDHRRRHHSRAC 59

Query: 54  RLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRR------KPGEGSWNAASDERP 107
           R G      S GGGAASIWHAILPS G      RR+  R      + GEGSWN A D RP
Sbjct: 60  RQG------SSGGGAASIWHAILPSGG-----DRRSSLRPALLHDQKGEGSWNVAWDARP 108

Query: 108 ARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKR 167
           ARWLHR DSAWLLFGVC+CLAP+    DS D + E V   +    KI+G    ++++ + 
Sbjct: 109 ARWLHRPDSAWLLFGVCACLAPL----DSFDVDNEVVAVDD----KIEGCNQVNEISDEN 160

Query: 168 CEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLK 227
               +   ++VTGV ADGRCLFRAIAH ACLRSGEE PDE RQ ELAD+LRAQVVDELLK
Sbjct: 161 NN--SSADYRVTGVPADGRCLFRAIAHSACLRSGEEAPDENRQTELADDLRAQVVDELLK 218

Query: 228 RRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIAN 287
           RR+ETEWFIEG+FD YVK IQQPYVWGGEPEL+MASHVLK PI+VFM+ +SSG+L NIAN
Sbjct: 219 RREETEWFIEGNFDAYVKRIQQPYVWGGEPELIMASHVLKMPISVFMIGRSSGDLKNIAN 278

Query: 288 YGEEYQKDKESPINVLFHGYGHYDILETFSEQ 319
           YG+EY+ D ESPINVLFHGYGHYDILETFS+ 
Sbjct: 279 YGKEYRIDNESPINVLFHGYGHYDILETFSDH 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113207|ref|XP_002316423.1| predicted protein [Populus trichocarpa] gi|222865463|gb|EEF02594.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 207/326 (63%), Positives = 231/326 (70%), Gaps = 22/326 (6%)

Query: 1   MLGVLCARHKP-WILNSISLLAHGSFAAHHQNRFVYSPIHVQ--SPERRRHHSTACRLGV 57
           MLGVLCAR KP WILNS+    H +   HH +    S +H+   S   RRHHS  C    
Sbjct: 1   MLGVLCARPKPNWILNSLFTHFHLNHHHHHNSNNRLS-LHLSGSSTAARRHHSNLCSADS 59

Query: 58  GGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSA 117
           G GG      AA+IWH I P+D     RRR   R   GEGSWNAA D RPARWLHR DSA
Sbjct: 60  GCGG------AAAIWHVIQPAD----WRRRTERRSVRGEGSWNAAWDGRPARWLHRPDSA 109

Query: 118 WLLFGVCSCLAP-IEYWTDSNDSNPETVTFYEEKISKIDGG---GGGDDLNVKRCEIINE 173
           WLLFGVC+CLAP IE+ +D N  N + V   E++  +IDGG      DD      +    
Sbjct: 110 WLLFGVCACLAPAIEFLSDVN--NIDDVDHQEKE--RIDGGDLNASSDDAKQDNSDATVG 165

Query: 174 RPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE 233
             +KVTGVLADGRCLFRAIAH ACLR+GEE PDE RQRELADELRAQVVDELLKRR+ETE
Sbjct: 166 SDYKVTGVLADGRCLFRAIAHMACLRNGEEAPDENRQRELADELRAQVVDELLKRREETE 225

Query: 234 WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQ 293
           WFIEGDFD YVK IQQPYVWGGEPELLMASHVLK  I+VFM  +++GNLVNI NYGEEYQ
Sbjct: 226 WFIEGDFDAYVKRIQQPYVWGGEPELLMASHVLKTMISVFMRDRTTGNLVNIVNYGEEYQ 285

Query: 294 KDKESPINVLFHGYGHYDILETFSEQ 319
           KD+ +PINVLFHGYGHYDILET   Q
Sbjct: 286 KDEVNPINVLFHGYGHYDILETTPGQ 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486932|ref|XP_002267087.2| PREDICTED: uncharacterized protein LOC100245448 [Vitis vinifera]

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 185/281 (65%), Positives = 211/281 (75%), Gaps = 27/281 (9%)

Query: 45  RRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRR------KPGEGS 98
           RRRHHS ACR G      S GGGAASIWHAILPS G      RR+  R      + GEGS
Sbjct: 114 RRRHHSRACRQG------SSGGGAASIWHAILPSGG-----DRRSSLRPALLHDQKGEGS 162

Query: 99  WNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGG 158
           WN A D RPARWLHR DSAWLLFGVC+CLAP+    DS D + E V   +    KI+G  
Sbjct: 163 WNVAWDARPARWLHRPDSAWLLFGVCACLAPL----DSFDVDNEVVAVDD----KIEGCN 214

Query: 159 GGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELR 218
             ++++ +     +   ++VTGV ADGRCLFRAIAH ACLRSGEE PDE RQ ELAD+LR
Sbjct: 215 QVNEISDENNN--SSADYRVTGVPADGRCLFRAIAHSACLRSGEEAPDENRQTELADDLR 272

Query: 219 AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQS 278
           AQVVDELLKRR+ETEWFIEG+FD YVK IQQPYVWGGEPEL+MASHVLK PI+VFM+ +S
Sbjct: 273 AQVVDELLKRREETEWFIEGNFDAYVKRIQQPYVWGGEPELIMASHVLKMPISVFMIGRS 332

Query: 279 SGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ 319
           SG+L NIANYG+EY+ D ESPINVLFHGYGHYDILETFS+ 
Sbjct: 333 SGDLKNIANYGKEYRIDNESPINVLFHGYGHYDILETFSDH 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097684|ref|XP_002311041.1| predicted protein [Populus trichocarpa] gi|222850861|gb|EEE88408.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 204/330 (61%), Positives = 227/330 (68%), Gaps = 22/330 (6%)

Query: 1   MLGVLCARHKP-WILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCAR KP WILNS+    H     H  N  +   +       RRHHS+ C      
Sbjct: 1   MLGVLCARPKPNWILNSLFTHFHHQHHHHQSNDRLSLHLPHSFTAARRHHSSFC------ 54

Query: 60  GGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWL 119
                GGGAA+IWH + P+D     RRRR  R   GEGSWN A D RPARWLHR DSAWL
Sbjct: 55  SADCGGGGAAAIWHVVQPADW----RRRRGRRSVRGEGSWNVAWDGRPARWLHRPDSAWL 110

Query: 120 LFGVCSCLAP-IEYWTDSNDSNPETVTF---YEEKISKIDGGG------GGDDLNVKRCE 169
           LFGVC+CLAP IE + D N    E V     ++EK  +IDGG         DD+      
Sbjct: 111 LFGVCACLAPAIELFCDVNIEGGENVVVDVDHQEK-ERIDGGDLNASAVNSDDVKQDSSS 169

Query: 170 IINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRR 229
                 +KVTGVLADGRCLFRAIAH ACLR+GEE PDE RQRELADELRAQVVDELLKRR
Sbjct: 170 STAGSDYKVTGVLADGRCLFRAIAHMACLRNGEEAPDENRQRELADELRAQVVDELLKRR 229

Query: 230 KETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYG 289
           +ETEWFIEGDFD YVK IQQPYVWGGEPELLMASHVLK  I+VFM  +++GNLVNIANYG
Sbjct: 230 EETEWFIEGDFDAYVKRIQQPYVWGGEPELLMASHVLKTMISVFMRDRTTGNLVNIANYG 289

Query: 290 EEYQKDKESPINVLFHGYGHYDILETFSEQ 319
           EEY+KD+ +PINVLFHGYGHYDILET   Q
Sbjct: 290 EEYRKDEVNPINVLFHGYGHYDILETTPGQ 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535547|ref|XP_003536306.1| PREDICTED: uncharacterized protein LOC100793001 [Glycine max]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/318 (59%), Positives = 216/318 (67%), Gaps = 26/318 (8%)

Query: 1   MLGVLCA-RHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCA R KPW+L+ + +  H S                 SP  RR HSTAC+L + G
Sbjct: 1   MLGVLCATRPKPWLLSLVHV--HASLP----RLPHSPLSPSASPPPRRRHSTACKLFLSG 54

Query: 60  GGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRK-PGEGSWNAASDERPARWLHRADSAW 118
           G       AASIWHAI+P  G  G RR         GEGSWN A D RPARWLHR DSAW
Sbjct: 55  GA------AASIWHAIMPR-GDDGLRRGVVAVHDLKGEGSWNVAWDARPARWLHRPDSAW 107

Query: 119 LLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKV 178
           LLFGVC+CLAP     D+ D+N   +   +E    +D     D+++           ++V
Sbjct: 108 LLFGVCACLAPPPGCVDA-DTNSAGIAV-DESCGLLDKEREEDEVSAD---------YRV 156

Query: 179 TGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG 238
           TGV ADGRCLFRAIAHGACLR+GE+ PDE RQRELADELRA+VVDELLKRR+ETEWFIEG
Sbjct: 157 TGVPADGRCLFRAIAHGACLRNGEKAPDENRQRELADELRAKVVDELLKRREETEWFIEG 216

Query: 239 DFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKES 298
           DFDTY++ IQQPYVWGGEPELLMASHVLK PI+VFM    S  LVNIA YGEEY+ DK+ 
Sbjct: 217 DFDTYLQRIQQPYVWGGEPELLMASHVLKTPISVFMRDTGSVELVNIAKYGEEYRNDKDI 276

Query: 299 PINVLFHGYGHYDILETF 316
            INVLFHGYGHYDILET 
Sbjct: 277 SINVLFHGYGHYDILETL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576317|ref|XP_003556279.1| PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/319 (59%), Positives = 216/319 (67%), Gaps = 28/319 (8%)

Query: 1   MLGVLCA-RHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCA R KPW+ +    L H S           S     SP  RR HSTAC+L +  
Sbjct: 1   MLGVLCATRSKPWLFS----LVHASLPRLSHAPLSPS----ASPPPRRRHSTACKLFLSA 52

Query: 60  GGLSVGGGAASIWHAILPS-DGCSGCRRRRNG-RRKPGEGSWNAASDERPARWLHRADSA 117
           GG      AASIWHAI+P  +   G RR         GEGSWN A D RPARWLHR DSA
Sbjct: 53  GG------AASIWHAIMPRVNDDDGFRRGVVAFHDMKGEGSWNVAWDARPARWLHRPDSA 106

Query: 118 WLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFK 177
           WLLFGVC+CLAP     D+ D+N + +   +E    +D          +R E      ++
Sbjct: 107 WLLFGVCACLAPPSSCVDA-DTNTDAIAV-DESCRLLDK---------EREEYEVSADYR 155

Query: 178 VTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE 237
           VTGV ADGRCLFRAIAHGACLR+GE+ PDE RQRELADELRA+VVDEL+KRR+ETEWFIE
Sbjct: 156 VTGVPADGRCLFRAIAHGACLRNGEKAPDENRQRELADELRAKVVDELMKRREETEWFIE 215

Query: 238 GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKE 297
           GDFDTYV+ IQQPYVWGGEPELLMASHVLK PI+VFM    S +LVNIA YGEEY+ DKE
Sbjct: 216 GDFDTYVQRIQQPYVWGGEPELLMASHVLKTPISVFMRDTGSVDLVNIAKYGEEYRNDKE 275

Query: 298 SPINVLFHGYGHYDILETF 316
             INVLFHGYGHYDILET 
Sbjct: 276 ISINVLFHGYGHYDILETL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468350|dbj|BAE71258.1| hypothetical protein [Trifolium pratense]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 182/338 (53%), Positives = 221/338 (65%), Gaps = 42/338 (12%)

Query: 1   MLGVLCA-RHKPWILNSI----------SLLAHGSFAAHHQNRFVYSPIHVQSPERRRHH 49
           MLGVLCA R +PWI + +          + LAH + A+        SP    +   RR+H
Sbjct: 1   MLGVLCATRSRPWIFSFLHHSSSHHHHTARLAHITVASSSS----LSPTFFSA---RRNH 53

Query: 50  STACRLGVGGGGLSVGGGAASIWHAILPSDG---CSGCRRRRNGRRKPGEGSWNAASDER 106
           S+ C+L +     S GGGAASIWHAI+P  G     G     +     GEGSWN A D R
Sbjct: 54  SSQCKLQI-----SAGGGAASIWHAIMPCGGDGFQRGAFMVHHDHELKGEGSWNVAWDAR 108

Query: 107 PARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNP-ETVTFYEEKISKIDGGGGGDDLNV 165
           PARWLHR+DSAWLLFGV + LAP     D +   P  T     ++IS+ +G      L +
Sbjct: 109 PARWLHRSDSAWLLFGVRAWLAPPPVIVDVDPEVPLPTSVISPDEISRSEG------LEI 162

Query: 166 KRCEIINERP-------FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELR 218
           K  E  +++P       ++VTGVLADGRCLFRA+AHGACL++GEE P+E RQRELADELR
Sbjct: 163 KDAE--SDKPNDELSSDYRVTGVLADGRCLFRALAHGACLKNGEEAPNENRQRELADELR 220

Query: 219 AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQS 278
           A+V +ELLKRRKETEWFIEGDFDTYV  IQQ +VWGGEPELLMASHVLK PI VFM   +
Sbjct: 221 AKVAEELLKRRKETEWFIEGDFDTYVTRIQQSFVWGGEPELLMASHVLKTPIFVFMRDPN 280

Query: 279 SGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETF 316
           S +LVNIA YGEEY  D+   INVLFH +GHY++LET 
Sbjct: 281 SIDLVNIAKYGEEYMNDEGISINVLFHRHGHYELLETL 318

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580118|ref|XP_002530891.1| cysteine-type peptidase, putative [Ricinus communis] gi|223529544|gb|EEF31497.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 127/137 (92%)

Query: 179 TGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG 238
            GVLADGRCLFRAIAHGACLRSGEE PDE RQR LADELRAQVVDELLKRR+ETEWFIEG
Sbjct: 39  AGVLADGRCLFRAIAHGACLRSGEEAPDENRQRVLADELRAQVVDELLKRREETEWFIEG 98

Query: 239 DFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKES 298
           DFD YVK IQQPYVWGGEPELLMASHVLK  I+VFM+ ++SGNLVNIANYGEEY+KD+ +
Sbjct: 99  DFDAYVKRIQQPYVWGGEPELLMASHVLKTMISVFMIDRASGNLVNIANYGEEYRKDEVN 158

Query: 299 PINVLFHGYGHYDILET 315
           PINVLFHGYGHYDILET
Sbjct: 159 PINVLFHGYGHYDILET 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907480|gb|ABR16871.1| unknown [Picea sitchensis]

 Score =  243 bits (621), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 188/346 (54%), Gaps = 76/346 (21%)

Query: 30  QNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDG--------- 80
           Q+  + +  H+ + +R +HHS++C L        +G   A+IWHA++PS           
Sbjct: 85  QHNSIETCCHLSNAKRAQHHSSSCLLAEN----HIGSVGATIWHALIPSSSQFSHTQQVP 140

Query: 81  --------------CSGCRRRRNGRRKPG----------------------EGSWNAASD 104
                         C+  R    G  +                        EGSWNA  D
Sbjct: 141 NVENGKIRAESNSLCNFSRSNSVGFERSSIGIYGKCDSMTCPKLPVVGGFSEGSWNATWD 200

Query: 105 ERPARWLHRADSAWLLFGVCSCLAPIE------------YWTDSNDSNPETVTFYEEKIS 152
            RPARWLH + SAWLLFGVC+C + +                D ND N       ++ I 
Sbjct: 201 VRPARWLHGSHSAWLLFGVCACFSSLNPAHSEAETVEVVAGIDENDVN----NALDDAIP 256

Query: 153 KIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRE 212
             D    G  + +          + VT +  DGRCLFRA+AHGA LRSG+  P+E  QRE
Sbjct: 257 AADQASHGKKVYID---------YSVTAIPGDGRCLFRAVAHGASLRSGKPAPNESLQRE 307

Query: 213 LADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAV 272
           LADELR +V DELLKRR+ETEWFIEGDFD YV++I++P+VWGGEPELLMASHVL+ PI V
Sbjct: 308 LADELRTRVADELLKRREETEWFIEGDFDKYVEQIKRPHVWGGEPELLMASHVLQMPITV 367

Query: 273 FMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSE 318
           +M  + +  L+ IA YG++Y K   +PI+VL+HG+GHYD L+  ++
Sbjct: 368 YMRERETDGLIAIAEYGQDYGKG--NPISVLYHGFGHYDALQIHND 411

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	320
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.425	0.429	0.623	5.4e-47
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.428	0.585	0.301	3.4e-13
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.456	0.498	0.283	1.4e-08
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.4	0.385	0.301	4.5e-06
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.425	0.442	0.287	1.9e-05
MGI|MGI:1098801	1107	Otud4 "OTU domain containing 4	0.356	0.102	0.293	7.6e-05
UNIPROTKB|Q01804	1113	OTUD4 "OTU domain-containing p	0.356	0.102	0.293	7.6e-05
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.328	0.111	0.289	0.0001
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.328	0.111	0.289	0.0001
TAIR|locus:2039642	506	OTLD1 "otubain-like deubiquiti	0.4	0.252	0.268	0.00022

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 86/138 (62%), Positives = 110/138 (79%)

Query:   176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
             + + G+  DGRCLFR++AHG CLRSG+  P E+ QRELADELR +V DE ++RR+ETEWF
Sbjct:   168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWF 227

Query:   236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKD 295
             +EGDFDTYV++I+ P+VWGGEPEL MASHVL+ PI V+M    +G L++IA YG+EY KD
Sbjct:   228 VEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKD 287

Query:   296 KESPINVLFHGYGHYDIL 313
                PI VL+HG+GHYD L
Sbjct:   288 --DPIRVLYHGFGHYDAL 303

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 48/159 (30%), Positives = 77/159 (48%)

Query:   176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
             + V  V  DGRCLFRA+  G     G  + + +R+R+ ADELR  V + +    KE E +
Sbjct:    76 YAVDRVKGDGRCLFRALVKGMAFNKGITL-NPQRERDDADELRMAVKEVICNDPKEREKY 134

Query:   236 --------IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGN------ 281
                     ++     + + I +   WGGE ELL+ S + K+PI V++     G       
Sbjct:   135 KEALVAITVDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPIIVYIPEHEHGRGGGYGP 194

Query:   282 -LVNIANYGEEYQ------KDKESPINVLFHGYGHYDIL 313
               + I  YG E++      K  ++ + +L+ G  HYD+L
Sbjct:   195 GFIPIQEYGSEFRGGWGKGKTNKNVVRLLYSGRNHYDLL 233

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 45/159 (28%), Positives = 77/159 (48%)

Query:   165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDE 224
             +K  E + ER  ++  + +DG C++RA+ H    R G  +  +E + + A  +R+   D 
Sbjct:   136 LKLREKLVERHLQIKEISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDF 194

Query:   225 L--LKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNL 282
             +  L      + +   +F+ Y  ++     WGG+ EL   S VL+ PI V   +Q+    
Sbjct:   195 MPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEV---IQADSPC 251

Query:   283 VNIANYGEEYQKDKESPINVLFHGYG---HYDILETFSE 318
             + I   GEEY K K + I  + H YG   HY+ +E   +
Sbjct:   252 ITI---GEEYDKPKITLI-YMRHAYGLGEHYNSVEPLKD 286

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 44/146 (30%), Positives = 70/146 (47%)

Query:   178 VTGVLADGRCLFRAIAHGACLRSGEEVP-DEERQRELADE-LRAQVVDELLKRRKETEW- 234
             V+ +  DG CL+RA+ +    RSG   P   +  RE+A   +R    D L     ETE  
Sbjct:   183 VSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMREHKTDFLPFFLSETEGD 242

Query:   235 ----FIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGE 290
                   E  F+ Y +E++    WG + EL   +H L+K I V+     SG+  ++   G+
Sbjct:   243 SNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVY-----SGSFPDV-EMGK 296

Query:   291 EYQKDKESPINVLFH----GYG-HYD 311
             EY+   +S + + +H    G G HY+
Sbjct:   297 EYRSGDDSSLMLSYHRHAFGLGEHYN 322

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 125 (49.1 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 44/153 (28%), Positives = 67/153 (43%)

Query:   168 CEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEE----RQRELADELRAQVVD 223
             CE+   + F +     DG CLF +I     LR   +  D++    + R L+     +  D
Sbjct:   162 CELKKLKQFDIQ---PDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRD 218

Query:   224 ELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLV 283
             + +    + E     D D Y KE++    WGGE E+L  SHV   PI++ M    SG  +
Sbjct:   219 DFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM----SGRPI 274

Query:   284 NIANYGEEYQKDKESPINVLFHGYG---HYDIL 313
              + N   E  K+ E  +    H Y    HY+ L
Sbjct:   275 QVYN---ECGKNPELKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1098801 Otud4 "OTU domain containing 4" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 39/133 (29%), Positives = 64/133 (48%)

Query:   181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 240
             V  DG CLFRA+A        E+V   +  R +  E+R   +  L + R++ E FIEG F
Sbjct:    39 VAKDGSCLFRAVA--------EQVLHSQ-SRHV--EVRMACIRYLRENREKFEAFIEGSF 87

Query:   241 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 300
             + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct:    88 EEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVSPSHVTENNFPEK--------V 139

Query:   301 NVLFHGYGHYDIL 313
              + F    HYDI+
Sbjct:   140 LLCFSNGNHYDIV 152

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q01804 OTUD4 "OTU domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 39/133 (29%), Positives = 64/133 (48%)

Query:   181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 240
             V  DG CLFRA+A        E+V   +  R +  E+R   +  L + R++ E FIEG F
Sbjct:    39 VAKDGSCLFRAVA--------EQVLHSQ-SRHV--EVRMACIHYLRENREKFEAFIEGSF 87

Query:   241 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPI 300
             + Y+K ++ P  W G+ E+   S + +K   ++     S + V   N+ E+        +
Sbjct:    88 EEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEK--------V 139

Query:   301 NVLFHGYGHYDIL 313
              + F    HYDI+
Sbjct:   140 LLCFSNGNHYDIV 152

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 35/121 (28%), Positives = 61/121 (50%)

Query:   173 ERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET 232
             ++ F +  +  DG CLFRA+       S +    EE  +E+    R +VV+ LLK  +  
Sbjct:    47 KKNFYIKSIRTDGNCLFRAV-------SDQLYNHEENYKEI----RKKVVEHLLKNEELY 95

Query:   233 EWFIEGD--FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGE 290
             + FIE D  + +Y++ I     WGG+ EL     + K  I ++   Q +G ++ I N+ +
Sbjct:    96 KNFIEYDESYKSYIERISLDGTWGGQLELQAVGEIYKVNILIY---QENGCILEIKNHSD 152

Query:   291 E 291
             +
Sbjct:   153 D 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 35/121 (28%), Positives = 61/121 (50%)

Query:   173 ERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET 232
             ++ F +  +  DG CLFRA+       S +    EE  +E+    R +VV+ LLK  +  
Sbjct:    47 KKNFYIKSIRTDGNCLFRAV-------SDQLYNHEENYKEI----RKKVVEHLLKNEELY 95

Query:   233 EWFIEGD--FDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGE 290
             + FIE D  + +Y++ I     WGG+ EL     + K  I ++   Q +G ++ I N+ +
Sbjct:    96 KNFIEYDESYKSYIERISLDGTWGGQLELQAVGEIYKVNILIY---QENGCILEIKNHSD 152

Query:   291 E 291
             +
Sbjct:   153 D 153

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2039642 OTLD1 "otubain-like deubiquitinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
 Identities = 39/145 (26%), Positives = 67/145 (46%)

Query:   169 EIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKR 228
             EI   + F++  +L DG CLFRA+A        ++V  +    +LA   R   +D + + 
Sbjct:   209 EIRYSKGFEIRRMLEDGNCLFRAVA--------DQVYGDSEAYDLA---RQMCMDYMEQE 257

Query:   229 RKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANY 288
             R     FI   F +Y+K  ++  V+G   E+   + +  +PI ++     S   +NI  +
Sbjct:   258 RDHFSQFITEGFTSYLKRKRRDKVYGNNVEIQALAEMYNRPIHIYSY---STEPINI--F 312

Query:   289 GEEYQKDKESPINVLFHGYGHYDIL 313
                Y  D   PI + +H   HY+ L
Sbjct:   313 QGNYSTDTP-PIRLSYHHGNHYNSL 336

GO:0005634 "nucleus" evidence=ISM

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0003682 "chromatin binding" evidence=IDA

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0031491 "nucleosome binding" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	320
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	6e-23
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	7e-05

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 91.4 bits (227), Expect = 6e-23
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)

Query: 183 ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDT 242
            DG CLF A++                ++EL DELR  VV+ L + R++ E F+E D + 
Sbjct: 2   GDGNCLFHAVSDQLGD---------AGRQELHDELREAVVEYLRENREDFEKFLEEDENE 52

Query: 243 YVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINV 302
           Y K I +   WGG  E+   +H+L+ PI V+  +Q     V I  YG     +K+  I +
Sbjct: 53  YYKWISKDGAWGGNIEIFALAHILRVPIIVYK-LQGGRITVYIKIYGTYLPLNKKPVIRL 111

Query: 303 LFHGY----GHY 310
            + G      HY
Sbjct: 112 SYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 239 DFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKES 298
            +DTYV E+      G   E+   + +LK P         + +     N           
Sbjct: 235 LWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTN----TASPSIKCN---ICGTGFVG 287

Query: 299 PINVLFHGY--GHYDILE 314
             +   H    GHY+  E
Sbjct: 288 EKDYYAHALATGHYNFGE 305

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	320
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.95
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.91
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.85
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.81
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.63
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.41
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.83
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.68
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	82.27

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.4e-28  Score=232.88  Aligned_cols=137  Identities=38%  Similarity=0.669  Sum_probs=121.7

Q ss_pred             cchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-------
Q 020876          165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-------  237 (320)
Q Consensus       165 ~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe-------  237 (320)
                      .+....|..+++.+.+||.||+|||+||+|||..+++..+        ..+.||..+++||++|.++|.+|+.       
T Consensus       148 ~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~--------~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~  219 (302)
T KOG2606|consen  148 EKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLL--------SVQKLREETADYMREHVEDFLPFLLDEETGDS  219 (302)
T ss_pred             HHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCC--------cHHHHHHHHHHHHHHHHHHhhhHhcCcccccc
Confidence            3566778889999999999999999999999998877654        4788999999999999999999984       


Q ss_pred             ---cCHHHHHHhhcCCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCC----C-c
Q 020876          238 ---GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGY----G-H  309 (320)
Q Consensus       238 ---~sfeeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~----G-H  309 (320)
                         ++|++||+.|++++.|||++||.|+|++|++||.||+.+++      +..||++|.+  ..||.|+|++.    | |
T Consensus       220 ~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p------~~~~geey~k--d~pL~lvY~rH~y~LGeH  291 (302)
T KOG2606|consen  220 LGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGP------ILEYGEEYGK--DKPLILVYHRHAYGLGEH  291 (302)
T ss_pred             CCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCC------ceeechhhCC--CCCeeeehHHhHHHHHhh
Confidence               25999999999999999999999999999999999998854      5789999974  58999999985    3 9


Q ss_pred             ceeeecCC
Q 020876          310 YDILETFS  317 (320)
Q Consensus       310 YDSL~~~~  317 (320)
                      |||+.+..
T Consensus       292 YNS~~~~~  299 (302)
T KOG2606|consen  292 YNSVTPLK  299 (302)
T ss_pred             hccccccc
Confidence            99998754

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.91  E-value=7.4e-25  Score=179.39  Aligned_cols=113  Identities=38%  Similarity=0.668  Sum_probs=88.9

Q ss_pred             CCCCchhhHHHHHHHHhcC-CCCCChhHHHHHHHHHHHHHHHHHHh-hChhhhhhhhccCHHHHHHhhcCCCcccCHHHH
Q 020876          182 LADGRCLFRAIAHGACLRS-GEEVPDEERQRELADELRAQVVDELL-KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPEL  259 (320)
Q Consensus       182 pGDGNCLFRAVA~qL~~~~-G~~~~d~~l~q~~h~eLRq~vvdyI~-~n~d~Fe~FIe~sfeeY~~rM~k~g~WGG~lEL  259 (320)
                      ||||||||||||+||+... |.        +..|.+||+.+++||+ +|++.|++|+.++      +|+++++|||++||
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~--------~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el   66 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGS--------EDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIEL   66 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSS--------TTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHH
Confidence            7999999999999998443 22        2579999999999999 9999999999877      99999999999999


Q ss_pred             HHHHHhcCCCEEEEEeecCCCceeeEEecCCcc-cCCCCCcEEEEEcC-----CCcc
Q 020876          260 LMASHVLKKPIAVFMVVQSSGNLVNIANYGEEY-QKDKESPINVLFHG-----YGHY  310 (320)
Q Consensus       260 ~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~-~~~~~~pI~LlY~~-----~GHY  310 (320)
                      +|+|++|+++|+||+.... ..... +.+...+ ......++.++|+.     .+||
T Consensus        67 ~a~a~~~~~~I~v~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   67 QALANVLNRPIIVYSSSDG-DNVVF-IKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HHHHHHHTSEEEEECETTT-BEEEE-EEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             HHHHHHhCCeEEEEEcCCC-Cccce-eeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            9999999999999987432 12222 2332211 11236889999987     6798

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.85  E-value=5e-21  Score=176.64  Aligned_cols=165  Identities=22%  Similarity=0.323  Sum_probs=116.6

Q ss_pred             cccccccCC-CCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc---CCCC--C------------------
Q 020876          149 EKISKIDGG-GGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR---SGEE--V------------------  204 (320)
Q Consensus       149 ~~~~~~~~e-e~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~---~G~~--~------------------  204 (320)
                      .|++.+..| .+.+..++.+...|.+.--.+++|+|||||||||++++....   ....  +                  
T Consensus        13 ~~~~~L~~ey~~~~~~~~~ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~~~~~~~~i~~~~~~l~~~~   92 (244)
T PF10275_consen   13 EPLSALVKEYSDNDPIFQKKIKKLSQKYSGIRRVRGDGNCFYRAFGFSYLEQLLESPDDQEFERFLARIKSLKFKLEAFG   92 (244)
T ss_dssp             EETCHHHHCTTTTCHHHHHHHHHHHHHEEEEE-B-SSSTHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHhccCHHHHHHHHHHHhhhhheEeecCCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            467778788 444888888888888874459999999999999999975521   1110  0                  


Q ss_pred             -C-----------------------hh----HH---------HHHHHHHHHHHHHHHHhhChhhhhhhhc----cCHHHH
Q 020876          205 -P-----------------------DE----ER---------QRELADELRAQVVDELLKRRKETEWFIE----GDFDTY  243 (320)
Q Consensus       205 -~-----------------------d~----~l---------~q~~h~eLRq~vvdyI~~n~d~Fe~FIe----~sfeeY  243 (320)
                       +                       ..    .+         +......+|..++.||+.|+++|++|++    .++++|
T Consensus        93 ~~~~~~~~f~~~f~~~l~~i~~~~~~~~~~~~l~~~f~~~~~s~~iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~  172 (244)
T PF10275_consen   93 YDEEIFEDFYDEFLELLEKIANGESNSQRQEELLEAFNDEEISDYIVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEF  172 (244)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHCTSSHHH---HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHhCcCcccHHHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHH
Confidence             0                       00    11         2346678999999999999999999997    689999


Q ss_pred             HHhhcCC-CcccCHHHHHHHHHhcCCCEEEEEeecC-CCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeec
Q 020876          244 VKEIQQP-YVWGGEPELLMASHVLKKPIAVFMVVQS-SGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET  315 (320)
Q Consensus       244 ~~rM~k~-g~WGG~lEL~ALA~~l~v~I~Vy~~d~~-~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~  315 (320)
                      |++-..+ +..++++.|.|||++|+++|.|+..|++ .+..+....|.++.. .....|.|||. +||||+|+|
T Consensus       173 C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~-~~~~~i~LLyr-pgHYdIly~  244 (244)
T PF10275_consen  173 CSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNE-SQEPQITLLYR-PGHYDILYP  244 (244)
T ss_dssp             HHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SST-TSS-SEEEEEE-TBEEEEEEE
T ss_pred             HHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccC-CCCCEEEEEEc-CCccccccC
Confidence            9876665 8999999999999999999999999975 444455556643211 13578999996 799999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=3.1e-20  Score=171.38  Aligned_cols=161  Identities=22%  Similarity=0.277  Sum_probs=123.6

Q ss_pred             ccccccCCCCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc-CCCCC---------------------C--
Q 020876          150 KISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR-SGEEV---------------------P--  205 (320)
Q Consensus       150 ~~~~~~~ee~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~-~G~~~---------------------~--  205 (320)
                      |++.+-.|=.++..+..+.+.|.+..-.+++++|||||||||++..+... -++..                     +  
T Consensus        38 ~~s~l~~eY~~d~iy~~KIq~Lsk~Y~~iR~trgDGNCfyra~~~s~lE~ll~d~~~l~~fka~~~kt~~~L~~~gf~e~  117 (256)
T KOG3991|consen   38 PLSSLYAEYFGDPIYTTKIQELSKKYTVIRKTRGDGNCFYRAFAYSYLELLLLDRAELQKFKAAVEKTKETLVLLGFPEF  117 (256)
T ss_pred             cHHHHHHHhcCChHHHHHHHHHHHHhhhhheecCCCceehHHHHHHHHHHHHhchHHHHHHHHHHHhhhHHHHHcCCCcc
Confidence            45555555233447888888888886779999999999999998844310 00000                     0  


Q ss_pred             ---------------------hhH---------HHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHHhhcCC-Cc
Q 020876          206 ---------------------DEE---------RQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVKEIQQP-YV  252 (320)
Q Consensus       206 ---------------------d~~---------l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~rM~k~-g~  252 (320)
                                           .++         -+....++||..++.+|++|+|+|++||++  ++++||.+-.+| .+
T Consensus       118 t~~dFh~~Fievle~v~~g~sv~~l~~~~ndq~ssdyiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~k  197 (256)
T KOG3991|consen  118 TFEDFHDTFIEVLEDVEGGTSVDELLKIFNDQSSSDYIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYK  197 (256)
T ss_pred             chhhHHHHHHHHHHHHcCCccHHHHHHHHhccchhHHHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhh
Confidence                                 000         024578999999999999999999999985  899999999888 78


Q ss_pred             ccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeec
Q 020876          253 WGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET  315 (320)
Q Consensus       253 WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~  315 (320)
                      -.||++|.||++++++.|+|.++|+.+++....++|-+.    ..+.|.|||. +||||.||+
T Consensus       198 esdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~----s~P~I~LLYr-pGHYdilY~  255 (256)
T KOG3991|consen  198 ESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEA----SAPEIYLLYR-PGHYDILYK  255 (256)
T ss_pred             ccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccc----cCceEEEEec-CCccccccC
Confidence            899999999999999999999999876655555555422    2566899995 799999987

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.1e-16  Score=146.26  Aligned_cols=124  Identities=26%  Similarity=0.345  Sum_probs=104.0

Q ss_pred             cEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhh-hhhhccCHHHHHHhhcCCCccc
Q 020876          176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQPYVWG  254 (320)
Q Consensus       176 l~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~F-e~FIe~sfeeY~~rM~k~g~WG  254 (320)
                      +.++.||.|+.|||+||++.+....+.          ...+||+.++..+..||+.| +.++..+-+|||++|+++..||
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWG  179 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWG  179 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccC
Confidence            567889999999999999999742221          13689999999999999999 7788889999999999999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCC
Q 020876          255 GEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFS  317 (320)
Q Consensus       255 G~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~  317 (320)
                      |.+||..||+.|++.|.|++...     ..|..||++..-  ...+.|+|.+ -|||.|....
T Consensus       180 GaIElsILS~~ygveI~vvDiqt-----~rid~fged~~~--~~rv~llydG-IHYD~l~m~~  234 (307)
T KOG3288|consen  180 GAIELSILSDYYGVEICVVDIQT-----VRIDRFGEDKNF--DNRVLLLYDG-IHYDPLAMNE  234 (307)
T ss_pred             ceEEeeeehhhhceeEEEEecce-----eeehhcCCCCCC--CceEEEEecc-cccChhhhcc
Confidence            99999999999999999998764     346789976321  5778899964 3999987644

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.1e-13  Score=136.46  Aligned_cols=100  Identities=28%  Similarity=0.391  Sum_probs=86.3

Q ss_pred             chhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHH
Q 020876          166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVK  245 (320)
Q Consensus       166 ~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~  245 (320)
                      .........++.++++.+||||+|||+|+|++.   +        ++.|..+|+.+++++.++++.|+.|+.+++.+|+.
T Consensus       208 ~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~---d--------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k  276 (371)
T KOG2605|consen  208 RSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG---D--------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIK  276 (371)
T ss_pred             HHHHHHHHhhhhhhhcccCCchhhhccHHHhhc---C--------HHHHHHHHHHHHHHHhhcccccccccccchhhccc
Confidence            344444567899999999999999999999994   2        36899999999999999999999999999999999


Q ss_pred             hhcCCCcccCHHHHHHHHH---hcCCCEEEEEee
Q 020876          246 EIQQPYVWGGEPELLMASH---VLKKPIAVFMVV  276 (320)
Q Consensus       246 rM~k~g~WGG~lEL~ALA~---~l~v~I~Vy~~d  276 (320)
                      +|+++++||+++|++|+|.   +...++.+.+..
T Consensus       277 ~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~  310 (371)
T KOG2605|consen  277 RKRADGEPGNHIEQQAAADIYEEIEKPLNITSFK  310 (371)
T ss_pred             ccccCCCCcchHHHhhhhhhhhhccccceeeccc
Confidence            9999999999999999995   455566665543

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=4.5e-10  Score=107.38  Aligned_cols=132  Identities=17%  Similarity=0.036  Sum_probs=94.1

Q ss_pred             hhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-------cCH
Q 020876          169 EIINERPFKVTGVLADGRCLFRAIAHGACLRSG-EEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-------GDF  240 (320)
Q Consensus       169 ~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G-~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe-------~sf  240 (320)
                      ..+-...+.--.+.|||+|+|-+|++||..+-. .++       ..-+.+|-.-..|..++...|..|.-       -.|
T Consensus       164 ~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv-------~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~  236 (306)
T COG5539         164 VIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDV-------DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLW  236 (306)
T ss_pred             hHHHHHhhhccccCCCceEEEeEeccccceeeeeeec-------chhHHhhccCChhhhhhhhhhcccccchhhhhcchH
Confidence            333344677788999999999999999975422 111       12366777777788778888877763       279


Q ss_pred             HHHHHhhcCCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCC--Ccceeee
Q 020876          241 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGY--GHYDILE  314 (320)
Q Consensus       241 eeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~--GHYDSL~  314 (320)
                      ++||..|+-+..||+.+|+++||..|++|+.+++..+.      +++|+.-.. .....+.+.-|..  ||||++.
T Consensus       237 dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~------~ik~n~c~~-~~~~e~~~~~Ha~a~GH~n~~~  305 (306)
T COG5539         237 DTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASP------SIKCNICGT-GFVGEKDYYAHALATGHYNFGE  305 (306)
T ss_pred             HHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCc------eEEeecccc-ccchhhHHHHHHHhhcCccccC
Confidence            99999999999999999999999999999999987543      345543211 1123333333333  7999873

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.2e-08  Score=97.74  Aligned_cols=110  Identities=26%  Similarity=0.219  Sum_probs=92.9

Q ss_pred             CCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc-CHHHHHHhhcCCCccc-CHHHHH
Q 020876          183 ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG-DFDTYVKEIQQPYVWG-GEPELL  260 (320)
Q Consensus       183 GDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~-sfeeY~~rM~k~g~WG-G~lEL~  260 (320)
                      .|..|+|++.+..++.             .-..+||..|+..+.+|||.|.+.+.+ +--.|+.+++++-.|| |.+|+.
T Consensus       119 ~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia  185 (306)
T COG5539         119 DDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIA  185 (306)
T ss_pred             CchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEe
Confidence            5899999999999872             147899999999999999999999875 8999999999999999 999999


Q ss_pred             HHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeee
Q 020876          261 MASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILE  314 (320)
Q Consensus       261 ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~  314 (320)
                      ++++-|++.|.|+.++..     .+.+|++..-   ...+.++|.+ +|||...
T Consensus       186 ~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~~---~q~~~i~f~g-~hfD~~t  230 (306)
T COG5539         186 IISDQLPVRIHVVDVDKD-----SEDRYNSHPY---VQRISILFTG-IHFDEET  230 (306)
T ss_pred             Eeccccceeeeeeecchh-----HHhhccCChh---hhhhhhhhcc-cccchhh
Confidence            999999999999999854     2346764321   3567788875 5999765

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.27  E-value=5.2  Score=33.24  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             eCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHHhhcC--CCcccCHHH
Q 020876          181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQ--PYVWGGEPE  258 (320)
Q Consensus       181 IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~rM~k--~g~WGG~lE  258 (320)
                      +..|+|||--|||.+|.    ..          -..    +-+-|+.|..        +.+.|+..+++  +.+|-|   
T Consensus         3 ~sR~NNCLVVAis~~L~----~T----------~e~----l~~~M~An~~--------~i~~y~~W~r~~~~STW~D---   53 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLG----VT----------LEK----LDNLMQANVS--------TIKKYHTWLRKKRPSTWDD---   53 (104)
T ss_pred             ccCCCCeEeehHHHHhc----ch----------HHH----HHHHHHhhHH--------HHHHHHHHHhcCCCCcHHH---
Confidence            56799999999999985    21          111    1223444433        46778887764  468864   


Q ss_pred             HHHHHHhcCCCEEEE
Q 020876          259 LLMASHVLKKPIAVF  273 (320)
Q Consensus       259 L~ALA~~l~v~I~Vy  273 (320)
                      -.++|+.|++.|.|-
T Consensus        54 C~mFA~~LkVsm~vk   68 (104)
T PF05415_consen   54 CRMFADALKVSMQVK   68 (104)
T ss_pred             HHHHHHhheeEEEEE
Confidence            578999999999883

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	320
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		4e-05

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 172 NERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKE 231
           +++ F +  +  DG CLFRA+A        ++V  ++   E+   +R   +D L+K    
Sbjct: 42  DKKGFIIKQMKEDGACLFRAVA--------DQVYGDQDMHEV---VRKHCMDYLMKNADY 90
Query: 232 TEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEE 291
              ++  DF TY+   ++    G   E+   + +  +P+ V+     +  +  I  +   
Sbjct: 91  FSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGI 150
Query: 292 YQKDKESPINVLFHGYGHYD 311
           +Q + E PI V +H   HY+
Sbjct: 151 HQNEDE-PIRVSYHRNIHYN 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	320
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	9e-31
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-28
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	8e-25
3pfy_A	185	OTU domain-containing protein 5; structural genomi	9e-23
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	1e-09
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	9e-07
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	5e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  113 bits (284), Expect = 9e-31
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
           F++     DG C + +IA        +        + L +    +   E           
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQEE-----PEARL 83

Query: 236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKD 295
           +    + Y+K +     WG   E  M +  +   I ++  V +S  +     +G+    D
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT-VAASDEVEAGIKFGDG---D 139

Query: 296 KESPINVLFHGYGHYDILE 314
             + +N+L  G  H+D L 
Sbjct: 140 VFTAVNLLHSGQTHFDALR 158

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  107 bits (269), Expect = 3e-28
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
           F++     DG C + +IA        +        + L +    +   E     +     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQE-----EPEARL 83

Query: 236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKD 295
           +    + Y+K +     WG   E  M +  +   I ++  V +S  +     +G+    D
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWT-VAASDEVEAGIKFGDG---D 139

Query: 296 KESPINVLFHGYGHYDILETFSEQK 320
             + +N+L  G  H+D L    + +
Sbjct: 140 VFTAVNLLHSGQTHFDALRILPQFE 164

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 98.9 bits (246), Expect = 8e-25
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 22/142 (15%)

Query: 173 ERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKE- 231
           E    V  VL D  CLF AIA+   +   +             +LR  V  E+L    + 
Sbjct: 17  ENVLSVHPVLDDNSCLFHAIAY--GIFKQDS----------VRDLREMVSKEVLNNPVKF 64

Query: 232 TEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEE 291
            +  ++     Y + I +   WGG  E+ + S  L   I V  +     + V I  + E+
Sbjct: 65  NDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDI-----DAVKIEKFNED 119

Query: 292 YQKDKESPINVLFHGYGHYDIL 313
              +    I +LF+G  HYD L
Sbjct: 120 KFDN---YILILFNG-IHYDSL 137

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 92.5 bits (229), Expect = 9e-23
 Identities = 28/145 (19%), Positives = 60/145 (41%), Gaps = 17/145 (11%)

Query: 169 EIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKR 228
            + +++ F +  +  DG CLFRA+A                 +++ + +R   +D L+K 
Sbjct: 52  ALRDKKGFIIKQMKEDGACLFRAVADQVY-----------GDQDMHEVVRKHCMDYLMKN 100

Query: 229 RKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANY 288
                 ++  DF TY+   ++    G   E+   + +  +P+ V+             N 
Sbjct: 101 ADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST------EPINT 154

Query: 289 GEEYQKDKESPINVLFHGYGHYDIL 313
                ++++ PI V +H   HY+ +
Sbjct: 155 FHGIHQNEDEPIRVSYHRNIHYNSV 179

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 206 DEERQRELADELRAQVVDELLKRRKETEWFIEGD--FDTY-VKEIQQPYVWGGEPELLMA 262
           D+     L   LR      L +  K  E FIEG      +  +E++          ++  
Sbjct: 127 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 186

Query: 263 SHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDIL 313
           +  L   I V  + +  G   N       + +  E  + +L+   GHYDIL
Sbjct: 187 AQALSVSIQVEYMDRGEGGTTNP----HIFPEGSEPKVYLLYRP-GHYDIL 232

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 10/132 (7%)

Query: 186 RCLFRAIAHGACLRSGEEV-PDEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDT 242
             +   +     + S  +V  D+     +   LR      +  R      FI+   D   
Sbjct: 103 YSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKD 162

Query: 243 YV-KEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPIN 301
           +   E++         ++   S  L   + V  V       +N   + E         + 
Sbjct: 163 FCTHEVEPMATECDHIQITALSQALSIALQVEYV-DEMDTALNHHVFPE----AATPSVY 217

Query: 302 VLFHGYGHYDIL 313
           +L+    HY+IL
Sbjct: 218 LLYKT-SHYNIL 228

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 217 LRAQVVDELLKRRKETEWFIEGDFDTYV---KEIQQPYVWGGEPELLMASHVLKKPIAVF 273
            R      L +  +E   FI+          +EI+  +       +          + + 
Sbjct: 173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIE 232

Query: 274 MVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDIL 313
            + +++              +     I +L+   GHYD++
Sbjct: 233 YMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRP-GHYDVI 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 46/352 (13%), Positives = 93/352 (26%), Gaps = 104/352 (29%)

Query: 11  PWILNSISL------LAHGSFAAHHQNRF----VYSPIHVQSPE-----RR-----RHHS 50
            ++++ I        +    +       +    V++  +V   +     R+     R   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 51  TACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSW-NAASDERPAR 109
                GV G G +            +  D C      +   +   +  W N  +   P  
Sbjct: 152 NVLIDGVLGSGKTW-----------VALDVC---LSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 110 WL-------HRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISK-----IDGG 157
            L       ++ D  W      S    +      +    E     + K  +     +   
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQAELRRLLKSKPYENCLLVLL-- 251

Query: 158 GGGDDLNVKRCEIINERPFKVTGVLADGRC--LFRAIAHGACLRSGEEVPDEERQRELAD 215
                 NV+  +  N   F       +  C  L                    R +++ D
Sbjct: 252 ------NVQNAKAWN--AF-------NLSCKILLTT-----------------RFKQVTD 279

Query: 216 ELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKK--PIAVF 273
            L A     +       +          VK +   Y+     +L      +    P  + 
Sbjct: 280 FLSAATTTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLS 331

Query: 274 MVVQSSGNLVNIANYGEEYQKDK-----ESPINVLFHGY--GHYDILETFSE 318
           ++ +S  + +   +  +    DK     ES +NVL        +D L  F  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Length = 454

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 36/155 (23%)

Query: 184 DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRR-------------- 229
            G CL  ++        G    D   ++ L D L           R              
Sbjct: 197 AGDCLLDSVLQAT---WGIYDKDSVLRKALHDSLHDC--SHWFYTRWKDWESWYSQSFGL 251

Query: 230 ----KETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVF---MVVQSSGNL 282
               +E +W  + D+   +    QP     +  + + +H+L++PI V+         G  
Sbjct: 252 HFSLREEQW--QEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGET 309

Query: 283 VNIANYGEEY-------QKDKESPINVLFHGYGHY 310
           +    +   Y           +SPI  L +  GH+
Sbjct: 310 LGYTRFQGVYLPLLWEQSFCWKSPI-ALGYTRGHF 343

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	320
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.94
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.94
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.93
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.91
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.3
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.2

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=7.8e-35  Score=260.24  Aligned_cols=134  Identities=22%  Similarity=0.446  Sum_probs=97.8

Q ss_pred             chhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHH
Q 020876          166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVK  245 (320)
Q Consensus       166 ~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~  245 (320)
                      +....++++||+++.||||||||||||++||+   |.        +..|.+||+.||+||++|+++|++||+++|++||+
T Consensus        49 ~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~---g~--------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~  117 (185)
T 3pfy_A           49 FEKALRDKKGFIIKQMKEDGACLFRAVADQVY---GD--------QDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN  117 (185)
T ss_dssp             HHHHHHHHHCCEEECCCCSTTHHHHHHHHHHH---SC--------GGGHHHHHHHHHHHHHHTHHHHTTCC---------
T ss_pred             HHHHHHHHCCcEEEeeCCCCChHHHHHHHHHh---CC--------chHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45555578999999999999999999999999   32        24789999999999999999999999999999999


Q ss_pred             hhcCCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecC
Q 020876          246 EIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETF  316 (320)
Q Consensus       246 rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~  316 (320)
                      +|+++++|||++||+|||++|+++|.||+.+..  + +.|. .|.+..  ...+|.|+|++.+|||||+..
T Consensus       118 ~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~--~-i~i~-~g~~~~--~~~~I~L~Y~~~~HYnSv~~p  182 (185)
T 3pfy_A          118 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTE--P-INTF-HGIHQN--EDEPIRVSYHRNIHYNSVVNP  182 (185)
T ss_dssp             --------CCHHHHHHHHHHHTSCEEEESSCSS--C-SEEE-CTTSCC--TTSCEEEEEETTTEEEEEECC
T ss_pred             HhhCCCccchHHHHHHHHHhhCCcEEEEECCCC--C-eEEe-cCccCC--CCCEEEEEECCCCCcccccCC
Confidence            999999999999999999999999999997643  2 2222 243321  368999999988899999875

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.97  E-value=2.3e-32  Score=248.20  Aligned_cols=126  Identities=29%  Similarity=0.425  Sum_probs=108.6

Q ss_pred             hcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhh-hhhccCHHHHHHhhcCC
Q 020876          172 NERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE-WFIEGDFDTYVKEIQQP  250 (320)
Q Consensus       172 ~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe-~FIe~sfeeY~~rM~k~  250 (320)
                      ...+|.++.|||||||||||||+|| ...           ..|.+||+.|++||++|+++|. .|++++|++||++|+++
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~-----------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~   83 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQ-----------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKM   83 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSS-----------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTST
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCc-----------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCC
Confidence            4457999999999999999999999 431           3588999999999999999995 67788999999999999


Q ss_pred             CcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCCC
Q 020876          251 YVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSE  318 (320)
Q Consensus       251 g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~d  318 (320)
                      ++|||++||+|||++|+++|.||+.+..     .+..||+++   ...+|.|+|++ +|||||+...+
T Consensus        84 ~~WGg~iEL~Als~~~~~~I~V~~~~~~-----~~~~~~~~~---~~~~I~L~Y~g-~HYdsl~~~~d  142 (212)
T 3by4_A           84 ESWGGAIEIGIISDALAVAIYVVDIDAV-----KIEKFNEDK---FDNYILILFNG-IHYDSLTMNEF  142 (212)
T ss_dssp             TSCCCHHHHHHHHHHHTCEEEEEETTTT-----EEEEESTTT---CSEEEEEEECS-SCEEEEEETTT
T ss_pred             CEEccHHHHHHHHHHHCCCEEEEECCCC-----CeEEeCCCC---CCCeEEEEEcC-CcceEEecCCC
Confidence            9999999999999999999999997532     256788765   25789999984 79999987433

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=2.1e-31  Score=237.64  Aligned_cols=133  Identities=17%  Similarity=0.298  Sum_probs=110.4

Q ss_pred             CcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHHhhcCCCccc
Q 020876          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWG  254 (320)
Q Consensus       175 gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~rM~k~g~WG  254 (320)
                      .|.+.+|+||||||||||++||+.+  .....   .+..|.+||+.|++||++|+++  .+++++|++||++|+++++||
T Consensus        30 ~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WG  102 (185)
T 3phx_A           30 YFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWG  102 (185)
T ss_dssp             HEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCC
T ss_pred             CeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccC
Confidence            4889999999999999999999842  11111   1245999999999999999998  467899999999999999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCCC
Q 020876          255 GEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSE  318 (320)
Q Consensus       255 G~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~d  318 (320)
                      |++||+|||++|+++|+||+.+... .++.+..||++..   ..+|+|+|++.+|||+|+++.+
T Consensus       103 g~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~~---~~~I~L~Y~g~~HYdsl~~~~~  162 (185)
T 3phx_A          103 STLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGDV---FTAVNLLHSGQTHFDALRILPQ  162 (185)
T ss_dssp             BHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCCT---TTSEEEEEETTTEEEEEEECGG
T ss_pred             cHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCCC---CCEEEEEECCCcCchhceECCC
Confidence            9999999999999999999987643 2455778987643   5899999998789999998764

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=1.1e-30  Score=239.00  Aligned_cols=134  Identities=16%  Similarity=0.286  Sum_probs=112.4

Q ss_pred             CcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHHhhcCCCccc
Q 020876          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWG  254 (320)
Q Consensus       175 gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~rM~k~g~WG  254 (320)
                      .|.+.+||||||||||||++||+.+.  ....   .+..|.+||+.|++||++|+++  .+++++|++||++|+++++||
T Consensus        30 ~~~V~rvpgDGnCLFrAVs~qL~~~~--~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WG  102 (219)
T 3phu_A           30 YFEIVRQPGDGNCFYHSIAELTMPNK--TDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWG  102 (219)
T ss_dssp             HEEEECCCCSSCHHHHHHHHHHCTTC--CTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCC
T ss_pred             ceEEEccCCCCchHHHHHHHHHhCCC--ccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccC
Confidence            48899999999999999999998421  1111   1245999999999999999998  467889999999999999999


Q ss_pred             CHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCCCC
Q 020876          255 GEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ  319 (320)
Q Consensus       255 G~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~d~  319 (320)
                      |++||+|||++|+++|+||+.+.+ +....+..||++..   ..+|+|+|++.+|||+|+++.+.
T Consensus       103 G~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~~---~~~I~L~Y~g~~HYdSL~~~~d~  163 (219)
T 3phu_A          103 STLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDV---FTAVNLLHSGQTHFDALRILPQF  163 (219)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCCT---TTSEEEEEETTTEEEEEEECTTT
T ss_pred             CHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCCC---CCeEEEEECCCcCchhheECCCC
Confidence            999999999999999999998754 22455778987643   68999999987899999998653

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.94  E-value=1.6e-26  Score=212.33  Aligned_cols=162  Identities=21%  Similarity=0.301  Sum_probs=126.4

Q ss_pred             cccccccCC-CCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc------------------------CCCC
Q 020876          149 EKISKIDGG-GGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR------------------------SGEE  203 (320)
Q Consensus       149 ~~~~~~~~e-e~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~------------------------~G~~  203 (320)
                      +|++.+..| .+.+..++.+...|.+..-.+++|+|||||||||++++....                        -|-+
T Consensus        15 ~~~~~L~~eY~~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFyRaf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~   94 (234)
T 2zfy_A           15 LELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFT   94 (234)
T ss_dssp             EEGGGGGGGSCTTCHHHHHHHHHHTTTCCEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCHHHHHHHHccCCHHHHHHHHHHHHhccceeeccCCccHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            478888888 556788888888888775569999999999999999765210                        0100


Q ss_pred             -CC-----------------------------hhHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHH-hhcCC
Q 020876          204 -VP-----------------------------DEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQP  250 (320)
Q Consensus       204 -~~-----------------------------d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~-rM~k~  250 (320)
                       .+                             ++..+......||..+++||++|+|+|++|+++  ++++||+ .+...
T Consensus        95 ~~~~edf~~~f~~ll~~i~~~~~~~~L~~~fndq~~s~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~  174 (234)
T 2zfy_A           95 EFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPM  174 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSST
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhccchHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhH
Confidence             00                             001123467789999999999999999999986  8999998 58778


Q ss_pred             CcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeec
Q 020876          251 YVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET  315 (320)
Q Consensus       251 g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~  315 (320)
                      ++|||++||+|||++|+++|.|++.+++.++.+....|+++    ...+|+|+|+ +||||+|++
T Consensus       175 ~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~----~~p~I~LlY~-pgHYdiLy~  234 (234)
T 2zfy_A          175 CKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG----SEPKVYLLYR-PGHYDILYK  234 (234)
T ss_dssp             TCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT----CCCSEEEEEE-TTEEEEEEC
T ss_pred             hhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC----CCCeEEEEEC-CCCcccCCC
Confidence            99999999999999999999999998765444555667543    2467999997 689999986

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.94  E-value=8.4e-27  Score=214.42  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=122.4

Q ss_pred             cccccccCCCCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHH-------------------------HHhcCCCC
Q 020876          149 EKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHG-------------------------ACLRSGEE  203 (320)
Q Consensus       149 ~~~~~~~~ee~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~q-------------------------L~~~~G~~  203 (320)
                      +|++.+..|=..+..++.+...|.+....+++|+|||||||||++++                         |... |- 
T Consensus        13 ~~~~~l~~eY~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~-g~-   90 (234)
T 1tff_A           13 CDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAA-GF-   90 (234)
T ss_dssp             BCTTHHHHSCSGGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TC-
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHHHHhhhheeecCCCccHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CC-
Confidence            46777777733567888888888888667999999999999999943                         3321 21 


Q ss_pred             CChh--------------------------------HHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHH-hhc
Q 020876          204 VPDE--------------------------------ERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQ  248 (320)
Q Consensus       204 ~~d~--------------------------------~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~-rM~  248 (320)
                       ++.                                ..+......||..++.||++|+|+|++|+++  ++++||+ .|.
T Consensus        91 -~~~~~edF~~~f~~ll~~i~~~~~~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve  169 (234)
T 1tff_A           91 -EEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVE  169 (234)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTS
T ss_pred             -chHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhh
Confidence             111                                0122367789999999999999999999976  8999999 687


Q ss_pred             CCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCCC
Q 020876          249 QPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSE  318 (320)
Q Consensus       249 k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~d  318 (320)
                      ..++|||++||+|||++|+++|+|++.+++. ..+....|.++    +...|+|+|+ +||||+|++.+.
T Consensus       170 ~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~~~----~~~~I~LlY~-pgHYdily~~~~  233 (234)
T 1tff_A          170 PMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEA----ATPSVYLLYK-TSHYNILYAADK  233 (234)
T ss_dssp             STTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCC----SSCSEEEEEE-TTEEEEEEECCC
T ss_pred             hhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCCCC----CCCeEEEEEC-CCCceecccCCC
Confidence            8899999999999999999999999998753 22223345432    2567999997 689999998753

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.93  E-value=3.4e-26  Score=216.25  Aligned_cols=168  Identities=15%  Similarity=0.170  Sum_probs=128.0

Q ss_pred             cccccccCC-CCCC-ccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc---CCC-------------------CC
Q 020876          149 EKISKIDGG-GGGD-DLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR---SGE-------------------EV  204 (320)
Q Consensus       149 ~~~~~~~~e-e~~~-~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~---~G~-------------------~~  204 (320)
                      .|++.+.+| .+.+ ..++.+...|.+..-.+++|+||||||||||+++....   ++.                   ..
T Consensus        48 ~~~~~L~~EYa~~~~~~~~~Ki~~L~~~Y~~~R~~RGDGNCFyRAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~  127 (284)
T 4dhi_B           48 APFSILCAEYDNETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGF  127 (284)
T ss_dssp             EEGGGGGGCTTSCCSHHHHHHHHHHHTTEEEEECBCCSTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHhccCchHHHHHHHHHHHHhccceeeecCCCchhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            367788888 4444 58999999998874449999999999999999855310   000                   00


Q ss_pred             C---------------------------------hhHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHH-hhc
Q 020876          205 P---------------------------------DEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQ  248 (320)
Q Consensus       205 ~---------------------------------d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~-rM~  248 (320)
                      +                                 ++..+......||..++.||+.|+++|++||++  ++++||+ .|.
T Consensus       128 ~~~~~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe  207 (284)
T 4dhi_B          128 PDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIE  207 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTS
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhce
Confidence            0                                 111135678899999999999999999999975  8999999 688


Q ss_pred             CCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEe-cCCcccCCCCCcEEEEEcCCCcceeeecCCC
Q 020876          249 QPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIAN-YGEEYQKDKESPINVLFHGYGHYDILETFSE  318 (320)
Q Consensus       249 k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~-fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~d  318 (320)
                      ..++|||++||+|||++|+++|.|+++|++.+..+..+. | ++........|.|||. +||||+||+..+
T Consensus       208 ~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p~~~~~~~p~I~LLYr-pgHYDILY~~~p  276 (284)
T 4dhi_B          208 PMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-PSDDQQIAPEITLLYR-PGHYDVIYKKDS  276 (284)
T ss_dssp             STTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-SCCCSCCCCSEEEEEE-TTEEEEEEECC-
T ss_pred             ehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-CCCCCCCCCEEEEeec-CCCccccccCCC
Confidence            889999999999999999999999999976544443344 6 3322112356999996 699999999865

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.91  E-value=2e-24  Score=211.41  Aligned_cols=160  Identities=20%  Similarity=0.266  Sum_probs=124.7

Q ss_pred             ccccccCC-CCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCC-----------------------
Q 020876          150 KISKIDGG-GGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVP-----------------------  205 (320)
Q Consensus       150 ~~~~~~~e-e~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~-----------------------  205 (320)
                      |++.+..| .+.+..++.+...|.+..-.+++|+||||||||||++++... .....                       
T Consensus       181 ~~~~L~~eY~~~~~~~~~k~~~L~~~y~~~R~vrgDGNCFYRAf~f~ylE~-ll~~~~e~~r~~~~~~~~~~~l~~~g~~  259 (399)
T 4ddg_A          181 ELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEA-LLDDSKELQRFKAVSAKSKEDLVSQGFT  259 (399)
T ss_dssp             EGGGHHHHSCTTCHHHHHHHHHHHHHCSEEECBCCSSCHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHhhccChHHHHHHHHHHhhcCeeeeecCCCchHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHhcCCc
Confidence            45566666 455667888888888776679999999999999999876632 10000                       


Q ss_pred             --------------------------------hhHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHH-hhcCC
Q 020876          206 --------------------------------DEERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQP  250 (320)
Q Consensus       206 --------------------------------d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~-rM~k~  250 (320)
                                                      ++..+......||..++.||+.|+++|++|+++  ++++||+ .|...
T Consensus       260 ~~~~edf~~~f~~ll~~i~~~~~~~~L~~~fnd~~~s~~iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~  339 (399)
T 4ddg_A          260 EFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPM  339 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSST
T ss_pred             hhhHHHHHHHHHHHHHHHHccCCHHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeH
Confidence                                            011123578889999999999999999999986  7999999 78888


Q ss_pred             CcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeec
Q 020876          251 YVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET  315 (320)
Q Consensus       251 g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~  315 (320)
                      ++|||++||+|||++|+++|.|++.|+..+.-+....|.++    ....|.|+|. +||||+||+
T Consensus       340 ~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~----~~~~I~LLYr-PgHYDiLY~  399 (399)
T 4ddg_A          340 CKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG----SEPKVYLLYR-PGHYDILYK  399 (399)
T ss_dssp             TCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTT----CCCCCEEEEE-TBEEEEEEC
T ss_pred             HhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCC----CCCEEEEEEc-CCccccCCC
Confidence            99999999999999999999999988754444545566433    2567999995 799999986

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.30  E-value=3.2e-06  Score=82.47  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=78.3

Q ss_pred             CcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChh-hh-----------hhhh------
Q 020876          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRK-ET-----------EWFI------  236 (320)
Q Consensus       175 gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d-~F-----------e~FI------  236 (320)
                      .+....+.||||||.+|++..++   |..        +...-||++..+-|++... .|           ..|.      
T Consensus       111 rL~pL~t~GDGnCLLHAvSqamW---Gv~--------DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y  179 (390)
T 3dkb_A          111 KLVALKTNGDGNCLMHATSQYMW---GVQ--------DTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCY  179 (390)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHHHH---SSC--------STTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----C
T ss_pred             ceEEEEecCCCchHHHHHhHHhc---CCC--------CHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccc
Confidence            47788899999999999999999   431        1233455555555554421 11           1121      


Q ss_pred             -c----cCHHHHHHhhcCCC---------cccCHHHHHHHHHhcCCCEEEEEee--cC--CCceeeEEecCCcccC---C
Q 020876          237 -E----GDFDTYVKEIQQPY---------VWGGEPELLMASHVLKKPIAVFMVV--QS--SGNLVNIANYGEEYQK---D  295 (320)
Q Consensus       237 -e----~sfeeY~~rM~k~g---------~WGG~lEL~ALA~~l~v~I~Vy~~d--~~--~~~lv~I~~fG~e~~~---~  295 (320)
                       +    ..|+.-++.-..+.         .==-++-+.+||++|++||+||...  ++  .|+-+..+.|+.-|-.   .
T Consensus       180 ~e~ew~~EW~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwp  259 (390)
T 3dkb_A          180 DTRNWNDEWDNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWP  259 (390)
T ss_dssp             CSSCSSHHHHHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCC
Confidence             1    23333333322211         1124788999999999999999643  21  1222222345533311   0


Q ss_pred             ----CCCcEEEEEcCCCcceeeecCCC
Q 020876          296 ----KESPINVLFHGYGHYDILETFSE  318 (320)
Q Consensus       296 ----~~~pI~LlY~~~GHYDSL~~~~d  318 (320)
                          -..||.|.|.+ |||.+|..+.+
T Consensus       260 p~~C~rsPI~LgY~s-~HFsaLV~me~  285 (390)
T 3dkb_A          260 AQECYRYPIVLGYDS-HHFVPLVTLKD  285 (390)
T ss_dssp             TTSSCSSCEEEEECS-SCEEEEEEBCS
T ss_pred             HHHccCCceEEEecc-Cceeeeeeccc
Confidence                15799999986 89999998764

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.20  E-value=8.1e-06  Score=80.80  Aligned_cols=133  Identities=23%  Similarity=0.350  Sum_probs=83.1

Q ss_pred             CcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhh-------Chhhhh---------hhh--
Q 020876          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLK-------RRKETE---------WFI--  236 (320)
Q Consensus       175 gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~-------n~d~Fe---------~FI--  236 (320)
                      .+..-...||||||-+|++..++   |..=.        -.-||+...+-|++       ++..++         .|.  
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamW---GV~Dr--------dlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~ld  256 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATW---GIYDK--------DSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLR  256 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTT---SSCCG--------GGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             ceeEeeecCCCccHHHHHHHHhh---cccCC--------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCccccc
Confidence            47788999999999999999999   53211        22345544444443       333221         122  


Q ss_pred             c----cCHHHHHHhhcCCCcccCHHHHHHHHHhcCCCEEEEEeecC--C-CceeeEEecCCcccC---C----CCCcEEE
Q 020876          237 E----GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQS--S-GNLVNIANYGEEYQK---D----KESPINV  302 (320)
Q Consensus       237 e----~sfeeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~--~-~~lv~I~~fG~e~~~---~----~~~pI~L  302 (320)
                      +    ..|+.-++.-..+|+==-++.+++||++|++||+||...--  . +.-+..++||.-|-.   .    ...||.|
T Consensus       257 e~ewq~EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvL  336 (454)
T 3zrh_A          257 EEQWQEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIAL  336 (454)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEE
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEE
Confidence            2    23444455555677666788899999999999999985411  0 111111234432210   0    1579999


Q ss_pred             EEcCCCcceeeecCCCC
Q 020876          303 LFHGYGHYDILETFSEQ  319 (320)
Q Consensus       303 lY~~~GHYDSL~~~~d~  319 (320)
                      .|.+ |||.+|..+.++
T Consensus       337 gY~~-gHFsaLV~~~~~  352 (454)
T 3zrh_A          337 GYTR-GHFSALVAMEND  352 (454)
T ss_dssp             EEET-TEEEEEEEBCCC
T ss_pred             Eecc-cceeeeeecccc
Confidence            9985 899999988663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	320
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	3e-11

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 3e-11
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 217 LRAQVVDELLKRRKETEWFIEGDF---DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVF 273
           LR      +  R      FI+ +    D    E++         ++   S  L   + V 
Sbjct: 129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE 188

Query: 274 MVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDIL 313
            V +     +N   + E         + +L+    HY+IL
Sbjct: 189 YVDEMDTA-LNHHVFPEAA----TPSVYLLYKT-SHYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	320
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.92

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-25  Score=200.54  Aligned_cols=164  Identities=16%  Similarity=0.205  Sum_probs=119.7

Q ss_pred             ccccccCCCCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc-CCCC-------------------------
Q 020876          150 KISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR-SGEE-------------------------  203 (320)
Q Consensus       150 ~~~~~~~ee~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~-~G~~-------------------------  203 (320)
                      |++.+-.|...+..++.+...|.+..-.+++|+|||||||||+++|+... -.++                         
T Consensus         8 ~~~~~~~ey~~~~~~~~k~~~L~~~y~~~R~vRgDGNCFYRaf~f~yle~Ll~~~~~~~~~~~~i~~~~~~l~~~~~~~~   87 (228)
T d1tffa_           8 DILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEH   87 (228)
T ss_dssp             CTTHHHHSCSGGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             cHHHHHHHccCCHHHHHHHHHHHHhccceEeecCCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence            34444445444778888888888886669999999999999999876421 0000                         


Q ss_pred             -------------------CChh---------HHHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHHh-hcCCCc
Q 020876          204 -------------------VPDE---------ERQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVKE-IQQPYV  252 (320)
Q Consensus       204 -------------------~~d~---------~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~r-M~k~g~  252 (320)
                                         .+.+         ..+......||..++.||++|++.|.+|+++  ++++||.+ |.+.++
T Consensus        88 ~~e~f~~~~~~li~~~~~~~~~~~l~~~f~~~~~s~~iv~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~  167 (228)
T d1tffa_          88 KFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAT  167 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTC
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHcCccccchHHHHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccc
Confidence                               0000         0112345568999999999999999999964  79999986 788899


Q ss_pred             ccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCCCC
Q 020876          253 WGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFSEQ  319 (320)
Q Consensus       253 WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~d~  319 (320)
                      |||++||.|||++|+++|+|++.++..+. +....++++    ...+|.|+|. +||||+|++.+.+
T Consensus       168 e~d~ieI~aLa~al~v~I~V~~~d~~~~~-~~~~~~~~~----~~~~I~Lly~-pgHYdiLY~~~~~  228 (228)
T d1tffa_         168 ECDHIQITALSQALSIALQVEYVDEMDTA-LNHHVFPEA----ATPSVYLLYK-TSHYNILYAADKH  228 (228)
T ss_dssp             CCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCC----SSCSEEEEEE-TTEEEEEEECCCC
T ss_pred             cCCcHHHHHHHHHhCCCEEEEEecCCCCc-cccccCCCC----CCCEEEEEeC-CCCcccCccCCCC
Confidence            99999999999999999999999865432 223334332    2578999996 6999999998653