Citrus Sinensis ID: 020903

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MATKVQSLARPVSEQRAILGPTGNRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSRRSVTAKRNGVKNMKVVPHASAEIPEASPMNSGPIKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNADAKKDLKTKIEEMKN
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccEEEcccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcc
ccccEccccccccccccccccccccEEEccccHHHcccccccccccccccHHHHHcccEEcccccccccccccccccccccEcEcccccccccccccEEEcccccccccccccccccccccccccccccEEEEEccHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEcccccHHccccccHHHHHHHHHHHHccccEccHHHHHHHHHHHccccccccccccHHHHHHHccHccccccccccc
matkvqslarpvseqrailgptgnrvrasqdpkrktevpkrpkkpapkipepvirnnasvdsscssesstssAASAKRMENSRRSVTAkrngvknmkvvphasaeipeaspmnsgpikrcdwitpnsdplyisfhdeewgvpvyddrkLFELLVFSQALaelswpailSRRDIFRKLFdnfdissvsQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFvnhapvrngfryarqvpvktpkaeLISKDLMqkgfrcvgpTVVYSFMQVSGIVNDHLLTCFRYQQCNADAKKDLKTKIEEMKN
matkvqslarpvseqrailgptgnrvrasqdpkrktevpkrpkkpapkipepvirnnasvdsscssesstssaasakrmensrrsvtakrngvknmkvvphasaeipeaspmnsgpIKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNADAKKDLKTKIEEMKN
MATKVQSLARPVSEQRAILGPTGNRVRASQDPKRKTEVpkrpkkpapkipepVIRNNasvdsscssesstssaasaKRMENSRRSVTAKRNGVKNMKVVPHASAEIPEASPMNSGPIKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEkkllslkvngslllsEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNADAKKDLKTKIEEMKN
********************************************************************************************************************IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNA***************
*********************************************************************************************************************KRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQ*******************
**********PVSEQRAILGPT***********************APKIPEPVIRNN******************************AKRNGVKNMKVVPHASAEIPEASPMNSGPIKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNADAKKDLKTKIEEMKN
*********************************************************************************************************************KRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNADA*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
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MATKVQSLARPVSEQRAILGPTGNRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSRRSVTAKRNGVKNMKVVPHASAEIPEASPMNSGPIKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQQCNADAKKDLKTKIEEMKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
Q7VG78 1375 Probable GMP synthase [gl yes no 0.575 0.133 0.436 7e-43
P05100187 DNA-3-methyladenine glyco N/A no 0.568 0.973 0.375 2e-36
P44321185 DNA-3-methyladenine glyco yes no 0.553 0.956 0.396 6e-34
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1 Back     alignment and function desciption
 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 116/190 (61%), Gaps = 6/190 (3%)

Query: 119 RCDWITPNSDP---LYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFR 175
           RC W T   +    LY  +HD EWG P+++D+KLFE LV     A LSW  IL +R+ FR
Sbjct: 787 RCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITILKKREAFR 846

Query: 176 KLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCW 235
             FD+FD   V+ + E K+  L  N  ++ + AK+ A + NAK  + VQ+EFGSF KY W
Sbjct: 847 VAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQREFGSFDKYIW 906

Query: 236 NFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLL 295
            FV   P+ N F     +P  TP ++ I+KDL ++GF+ VG T +Y+ MQ  G+VNDHL 
Sbjct: 907 GFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQSIGMVNDHLT 966

Query: 296 TCFRYQQCNA 305
           +CF+   CN+
Sbjct: 967 SCFK---CNS 973
Catalyzes the synthesis of GMP from XMP.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1 Back     alignment and function description
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
TAIR|locus:2037268329 AT1G75090 [Arabidopsis thalian 0.987 0.960 0.520 3.3e-86
TAIR|locus:2174373347 AT5G57970 [Arabidopsis thalian 0.646 0.596 0.547 2.3e-62
TAIR|locus:2200447352 AT1G15970 [Arabidopsis thalian 0.631 0.573 0.546 2.9e-62
TAIR|locus:2025697327 AT1G80850 [Arabidopsis thalian 0.581 0.568 0.586 4.2e-61
TAIR|locus:1006230719311 AT1G13635 [Arabidopsis thalian 0.6 0.617 0.463 1.8e-48
TAIR|locus:2087710312 AT3G12710 [Arabidopsis thalian 0.621 0.637 0.443 6.9e-47
TAIR|locus:2156329353 AT5G44680 [Arabidopsis thalian 0.587 0.532 0.463 6.9e-47
TIGR_CMR|CBU_0383212 CBU_0383 "DNA-3-methyladenine 0.578 0.872 0.422 3.2e-42
TIGR_CMR|GSU_0567191 GSU_0567 "DNA-3-methyladenine 0.575 0.963 0.413 4e-42
TIGR_CMR|CPS_2351194 CPS_2351 "DNA-3-methyladenine 0.559 0.922 0.395 1.3e-38
TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 167/321 (52%), Positives = 212/321 (66%)

Query:     1 MATKVQSLARPVSEQRAILGPTGNRVRASQ-DPKRKTEVXXXXXXXXXXXXXXVIRNNXX 59
             + +K++S  +P+ E RAIL  TGNR + ++ +  +K ++                 +N  
Sbjct:     3 IVSKLRSPVKPIDESRAILCSTGNRFKVTKTEMTKKPQLNPRVTKSPATKKPD---SNFS 59

Query:    60 XXXXXXXXXXXXXXXXXKRMENSRRSVT-AKRNGVKNMKVVPHASAEIPEASPMNSGPIK 118
                                  NS +  T +KRNGV+ +  V  + A + + SP   GP+K
Sbjct:    60 VSTDDSSSSSSSSERSSVNTTNSGKVTTPSKRNGVEKLNNVVASVAVVEDISPKIPGPVK 119

Query:   119 RCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLF 178
             RC WITPNSDP+Y+ FHDEEWGVPV DD+KLFELLVFSQALAE SWP+IL RRD FRKLF
Sbjct:   120 RCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDFRKLF 179

Query:   179 DNFDISSVSQFTEXXXXXXXXXXXXXXXEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFV 238
             + FD S+++QFTE               E KLRAIVENAK +LKV+QEFGSFS YCW FV
Sbjct:   180 EEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNYCWRFV 239

Query:   239 NHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCF 298
             NH P+RNG+RY RQVPVK+PKAE ISKD+MQ+GFRCVGPTV+YSF+Q SGIVNDHL  CF
Sbjct:   240 NHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHLTACF 299

Query:   299 RYQQCNADAKKDLKTKIEEMK 319
             RYQ+CN + +++ K+   E K
Sbjct:   300 RYQECNVETERETKSHETETK 320
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0006284 "base-excision repair" evidence=IEA
GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS
GO:0006306 "DNA methylation" evidence=RCA
TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2351 CPS_2351 "DNA-3-methyladenine glycosylase I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.20LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G75090
methyladenine glycosylase family protein; methyladenine glycosylase family protein; FUNCTIONS IN- DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN- DNA repair, base-excision repair; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- DNA glycosylase (InterPro-IPR011257), Methyladenine glycosylase (InterPro-IPR005019); BEST Arabidopsis thaliana protein match is- methyladenine glycosylase family protein (TAIR-AT5G57970.2); Has 1973 Blast hits to 1973 proteins in 804 species- Archae - 7; Bacteria - 1552; Metazoa - 5; [...] (329 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G75230
HhH-GPD base excision DNA repair family protein; HhH-GPD base excision DNA repair family protei [...] (394 aa)
      • 0.825
AT1G19480
HhH-GPD base excision DNA repair family protein; HhH-GPD base excision DNA repair family protei [...] (382 aa)
      • 0.825
AT3G50880
HhH-GPD base excision DNA repair family protein; HhH-GPD base excision DNA repair family protei [...] (273 aa)
      • 0.790
ATNTH2
endonuclease-related; endonuclease-related; FUNCTIONS IN- 4 iron, 4 sulfur cluster binding, seq [...] (386 aa)
      • 0.788
RRA1
RRA1 (REDUCED RESIDUAL ARABINOSE 1); REDUCED RESIDUAL ARABINOSE 1 (RRA1); LOCATED IN- endomembr [...] (402 aa)
      • 0.780
JAC1
JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein bi [...] (651 aa)
      • 0.690
ATNTH1
endonuclease-related; endonuclease-related; FUNCTIONS IN- 4 iron, 4 sulfur cluster binding, seq [...] (379 aa)
      • 0.679
RRA2
RRA2 (REDUCED RESIDUAL ARABINOSE 2); REDUCED RESIDUAL ARABINOSE 2 (RRA2); LOCATED IN- endoplasm [...] (428 aa)
      • 0.679
HMGB5
HMGB5 (HIGH MOBILITY GROUP B 5); DNA binding / chromatin binding / structural constituent of ch [...] (125 aa)
      • 0.657
HMGB1
HMGB1 (HIGH MOBILITY GROUP B 1); DNA binding / chromatin binding / structural constituent of ch [...] (185 aa)
      • 0.645

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
pfam03352179 pfam03352, Adenine_glyco, Methyladenine glycosylas 1e-100
COG2818188 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA 6e-68
TIGR00624179 TIGR00624, tag, DNA-3-methyladenine glycosylase I 2e-50
PRK10353187 PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla 1e-49
>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase Back     alignment and domain information 
 Score =  293 bits (752), Expect = e-100
 Identities = 91/181 (50%), Positives = 127/181 (70%), Gaps = 2/181 (1%)

Query: 122 WITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNF 181
           W T  SDPLY+++HDEEWGVPV+DDRKLFELL      A LSW  IL +R+ FR+ F  F
Sbjct: 1   WAT--SDPLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGF 58

Query: 182 DISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHA 241
           D   V+ FTE  +  L  +  ++ +  K+ A + NA+ +LK+Q+EFGSFS Y W+FV+  
Sbjct: 59  DPEKVAAFTEADVERLLADPGIIRNRLKIEATINNARAILKLQEEFGSFSAYLWSFVDGK 118

Query: 242 PVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTCFRYQ 301
           P+ N ++   +VP KTP ++ ISKDL ++GF+ VGPT+VY+FMQ  G+VNDHL+ CFR+ 
Sbjct: 119 PIVNRWKSLAEVPAKTPLSDAISKDLKKRGFKFVGPTIVYAFMQAVGMVNDHLVDCFRHA 178

Query: 302 Q 302
           +
Sbjct: 179 E 179

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179
>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I Back     alignment and domain information
>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 100.0
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 100.0
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 100.0
COG2818188 Tag 3-methyladenine DNA glycosylase [DNA replicati 100.0
cd00056158 ENDO3c endonuclease III; includes endonuclease III 95.69
PRK13913218 3-methyladenine DNA glycosylase; Provisional 95.2
TIGR03252177 uncharacterized HhH-GPD family protein. This model 94.96
TIGR01083191 nth endonuclease III. This equivalog model identif 94.72
smart00478149 ENDO3c endonuclease III. includes endonuclease III 94.6
PRK10702211 endonuclease III; Provisional 92.09
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 89.67
PRK10880 350 adenine DNA glycosylase; Provisional 87.93
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 87.93
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 87.78
PRK01229208 N-glycosylase/DNA lyase; Provisional 83.77
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-88  Score=608.47  Aligned_cols=184  Identities=38%  Similarity=0.782  Sum_probs=180.5

Q ss_pred             CCCCCCcCCCCCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHh
Q 020903          117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLS  196 (320)
Q Consensus       117 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~  196 (320)
                      |.||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||++|||++||+|+|+||++
T Consensus         1 m~rC~W~~--~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~   78 (187)
T PRK10353          1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_pred             CCCCCCCC--CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            46999995  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccc
Q 020903          197 LKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVG  276 (320)
Q Consensus       197 Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVG  276 (320)
                      ||+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|++.+..++|++|++|++|||+||||||+|||
T Consensus        79 Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW~fv~~~p~~~~~~~~~~~P~~t~~S~~lskdLKkrGFkFvG  158 (187)
T PRK10353         79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_pred             HhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhccCCCcccCCccchhcCCCCCHHHHHHHHHHHHcCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccCcccccccchh
Q 020903          277 PTVVYSFMQVSGIVNDHLLTCFRYQQ  302 (320)
Q Consensus       277 PttvYsFMQAvG~vNDHl~~C~r~~~  302 (320)
                      ||||||||||+||||||+++|+++..
T Consensus       159 pt~~ysfmqA~G~vndH~~~C~~~~~  184 (187)
T PRK10353        159 TTICYSFMQACGLVNDHVVGCCCHPG  184 (187)
T ss_pred             cHHHHHHHHHHCCccccccCccccCC
Confidence            99999999999999999999998843

>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
1lmz_A187 Solution Structure Of 3-Methyladenine Dna Glycosyla 4e-37
2ofk_A183 Crystal Structure Of 3-Methyladenine Dna Glycosylas 3e-36
2ofi_A184 Crystal Structure Of 3-Methyladenine Dna Glycosylas 2e-34
4ai5_A188 Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl 5e-31
4aia_A188 The Structural Basis Of 3-Methyladenine Recognition 9e-31
4ai4_A188 Crystal Structure Of E38q Mutant Of 3-Methyladenine 1e-30
2jg6_A186 Crystal Structure Of A 3-Methyladenine Dna Glycosyl 4e-30
>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 2/184 (1%)
Query: 117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRK 176
           ++RC W++   DPLYI++HD EWGVP  D +KLFE++      A LSW  +L +R+ +R 
Sbjct: 1   MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58
Query: 177 LFDNFDISSVSQFTEXXXXXXXXXXXXXXXEAKLRAIVENAKQMLKVQQEFGSFSKYCWN 236
            F  FD   V+   E                 K++AI+ NA+  L+++Q    F+ + W+
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWS 118
Query: 237 FVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLT 296
           FVNH P         ++P  TP ++ +SK L ++GF+ VG T+ YSFMQ  G+VNDH++ 
Sbjct: 119 FVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178
Query: 297 CFRY 300
           C  Y
Sbjct: 179 CCCY 182
>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183 Back     alignment and structure
>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184 Back     alignment and structure
>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188 Back     alignment and structure
>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 1e-110
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 1e-108
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186 Back     alignment and structure
 Score =  315 bits (811), Expect = e-110
 Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 2/188 (1%)

Query: 117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRK 176
           +  C + T   DP+Y+++HD  WG P+YD + LF+LL      A LSW  IL +++ + +
Sbjct: 1   MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEE 58

Query: 177 LFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWN 236
            F +F+   V+Q T + +  L    +++    KL AIV  A+  LK++Q +GSFSK+ W+
Sbjct: 59  AFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWS 118

Query: 237 FVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLT 296
           +VN  P    + +A         A  +SKDL Q GF+ +GP  V+SF++ +G+ + HL  
Sbjct: 119 YVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKD 178

Query: 297 CFRYQQCN 304
           C    + N
Sbjct: 179 CPSKPKHN 186
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 100.0
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 100.0
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 97.32
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 96.5
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 96.46
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 96.02
3n5n_X 287 A/G-specific adenine DNA glycosylase; alpha-helice 95.99
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 95.84
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 95.78
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 95.67
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 95.59
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 95.49
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 94.6
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 94.17
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 93.96
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 91.78
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 91.16
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 89.92
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 89.08
2d3d_A88 VTS1 protein; RNA binding, SAM domain, SRE hairpin 82.81
2b6g_A119 VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin 80.84
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
Probab=100.00  E-value=1.4e-92  Score=632.95  Aligned_cols=184  Identities=35%  Similarity=0.686  Sum_probs=180.6

Q ss_pred             CCCCCCcCCCCCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHh
Q 020903          117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLS  196 (320)
Q Consensus       117 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~  196 (320)
                      |+||.|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++
T Consensus         1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~   78 (186)
T 2jg6_A            1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR   78 (186)
T ss_dssp             CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            57999995  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccc
Q 020903          197 LKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVG  276 (320)
Q Consensus       197 Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVG  276 (320)
                      ||+|++|||||+||+|+|+|||++++|++|||||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+|||
T Consensus        79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG  158 (186)
T 2jg6_A           79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG  158 (186)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred             HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccCcccccccchh
Q 020903          277 PTVVYSFMQVSGIVNDHLLTCFRYQQ  302 (320)
Q Consensus       277 PttvYsFMQAvG~vNDHl~~C~r~~~  302 (320)
                      ||||||||||+||||||+++|+++.+
T Consensus       159 pt~~YafmQA~G~vndH~~~C~~~~~  184 (186)
T 2jg6_A          159 PVTVFSFLEAAGLYDAHLKDCPSKPK  184 (186)
T ss_dssp             HHHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred             hHHHHHHHHHhcccCccccCccccCC
Confidence            99999999999999999999998743
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A Back     alignment and structure
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 320
d1nkua_187 a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T 5e-80
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  239 bits (611), Expect = 5e-80
 Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 2/185 (1%)

Query: 117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRK 176
           ++RC W++   DPLYI++HD EWGVP  D +KLFE++      A LSW  +L +R+ +R 
Sbjct: 1   MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58

Query: 177 LFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWN 236
            F  FD   V+   E+ +  L  +  ++    K++AI+ NA+  L+++Q    F+ + W+
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWS 118

Query: 237 FVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLT 296
           FVNH P         ++P  TP ++ +SK L ++GF+ VG T+ YSFMQ  G+VNDH++ 
Sbjct: 119 FVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178

Query: 297 CFRYQ 301
           C  Y 
Sbjct: 179 CCCYP 183

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 96.03
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 95.67
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 94.47
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 93.95
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 93.9
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 93.64
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 92.45
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 88.98
d1oxja162 RNA-binding protein Smaug {Drosophila melanogaster 86.83
d1dxsa_57 C-terminal domain of p73 {Human (Homo sapiens) [Ta 86.23
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-89  Score=607.94  Aligned_cols=184  Identities=38%  Similarity=0.801  Sum_probs=181.6

Q ss_pred             CCCCCCcCCCCCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHh
Q 020903          117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLS  196 (320)
Q Consensus       117 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~  196 (320)
                      |+||.|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+|||+
T Consensus         1 ~~RC~W~~--~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~   78 (187)
T d1nkua_           1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_dssp             CCCCSSCC--SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHH
Confidence            68999996  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccc
Q 020903          197 LKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVG  276 (320)
Q Consensus       197 Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVG  276 (320)
                      ||+|++|||||+||+|||+|||++++|++|+|||++|||+|++++|++|++.+..++|++|++|++|||+|||+||+|||
T Consensus        79 Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFvG  158 (187)
T d1nkua_          79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCCC
T ss_pred             HhccCCeeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccCcccccccchh
Q 020903          277 PTVVYSFMQVSGIVNDHLLTCFRYQQ  302 (320)
Q Consensus       277 PttvYsFMQAvG~vNDHl~~C~r~~~  302 (320)
                      ||||||||||+||||||+++||+|..
T Consensus       159 pt~~ysfmqa~G~vndH~~~C~~~~~  184 (187)
T d1nkua_         159 TTICYSFMQACGLVNDHVVGCCCYPG  184 (187)
T ss_dssp             HHHHHHHHHHHTSEECCCSSSSSCCS
T ss_pred             hHHHHHHHHHcCCcCcccCCCCCCCC
Confidence            99999999999999999999999965
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure